Query gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 497
No_of_seqs 257 out of 8484
Neff 7.9
Searched_HMMs 39220
Date Mon May 30 06:51:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781102.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01085 murE UDP-N-acetylmur 100.0 0 0 997.1 30.7 463 27-494 1-494 (494)
2 PRK00139 murE UDP-N-acetylmura 100.0 0 0 963.9 35.2 469 1-495 3-478 (481)
3 PRK11929 putative bifunctional 100.0 0 0 962.3 35.7 461 28-495 27-498 (953)
4 COG0769 MurE UDP-N-acetylmuram 100.0 0 0 732.0 25.7 455 31-495 11-474 (475)
5 PRK11929 putative bifunctional 100.0 0 0 600.6 25.3 412 26-466 510-930 (953)
6 PRK10773 murF UDP-N-acetylmura 100.0 0 0 598.9 26.3 417 8-466 6-433 (452)
7 TIGR01143 murF UDP-N-acetylmur 100.0 0 0 594.7 23.0 410 35-468 1-449 (462)
8 PRK11930 putative bifunctional 100.0 0 0 545.3 28.5 434 9-476 6-468 (824)
9 COG0770 MurF UDP-N-acetylmuram 100.0 0 0 518.0 26.2 402 28-466 22-435 (451)
10 PRK00421 murC UDP-N-acetylmura 100.0 0 0 462.0 23.3 362 66-469 66-446 (459)
11 PRK03803 murD UDP-N-acetylmura 100.0 0 0 393.8 17.5 320 112-472 106-427 (448)
12 PRK02006 murD UDP-N-acetylmura 100.0 0 0 382.0 22.7 369 66-472 68-473 (501)
13 PRK02472 murD UDP-N-acetylmura 100.0 0 0 383.5 21.2 308 113-466 110-422 (450)
14 PRK02705 murD UDP-N-acetylmura 100.0 0 0 385.0 18.4 379 65-494 66-457 (459)
15 PRK03369 murD UDP-N-acetylmura 100.0 0 0 385.9 16.9 356 66-464 69-458 (487)
16 PRK04308 murD UDP-N-acetylmura 100.0 0 0 380.9 17.9 359 61-472 61-425 (445)
17 PRK01368 murD UDP-N-acetylmura 100.0 0 0 377.0 19.8 319 112-472 101-426 (450)
18 PRK01390 murD UDP-N-acetylmura 100.0 0 0 376.2 19.6 307 114-464 113-429 (457)
19 TIGR01082 murC UDP-N-acetylmur 100.0 0 0 374.7 19.8 377 60-470 54-483 (491)
20 PRK01438 murD UDP-N-acetylmura 100.0 0 0 372.4 19.6 320 113-470 120-454 (481)
21 PRK01710 murD UDP-N-acetylmura 100.0 0 0 374.3 17.5 316 112-472 114-438 (458)
22 COG0771 MurD UDP-N-acetylmuram 100.0 0 0 370.8 20.2 312 109-464 104-419 (448)
23 PRK04663 murD UDP-N-acetylmura 100.0 0 0 371.1 19.7 340 67-465 68-411 (438)
24 TIGR01087 murD UDP-N-acetylmur 100.0 0 0 371.6 18.7 359 44-465 68-451 (476)
25 PRK03806 murD UDP-N-acetylmura 100.0 0 0 368.6 20.6 306 112-465 102-411 (438)
26 PRK04690 murD UDP-N-acetylmura 100.0 0 0 366.4 21.1 309 113-465 113-429 (468)
27 PRK00141 murD UDP-N-acetylmura 100.0 0 0 367.0 19.2 356 66-469 75-445 (476)
28 TIGR02068 cya_phycin_syn cyano 100.0 0 0 369.3 13.6 435 9-466 333-860 (876)
29 COG0773 MurC UDP-N-acetylmuram 100.0 0 0 354.5 18.6 359 67-470 66-446 (459)
30 PRK00683 murD UDP-N-acetylmura 100.0 0 0 324.8 22.8 287 114-470 101-392 (418)
31 PRK10846 bifunctional folylpol 100.0 1.4E-45 0 315.9 17.1 322 114-466 48-402 (416)
32 PRK03815 murD UDP-N-acetylmura 100.0 1.2E-43 0 302.7 19.4 292 115-472 89-381 (401)
33 COG0285 FolC Folylpolyglutamat 100.0 4.5E-43 0 298.9 17.3 342 99-466 27-409 (427)
34 TIGR01499 folC FolC bifunction 100.0 7.6E-43 0 297.4 13.0 336 115-466 21-448 (460)
35 pfam08245 Mur_ligase_M Mur lig 100.0 1.3E-39 3.2E-44 276.5 3.9 185 120-322 1-188 (188)
36 TIGR01081 mpl UDP-N-acetylmura 100.0 2E-33 5E-38 236.3 13.2 374 34-469 51-446 (459)
37 KOG2525 consensus 99.9 2.4E-26 6.1E-31 190.3 7.6 319 114-466 71-480 (496)
38 pfam02875 Mur_ligase_C Mur lig 99.9 8.1E-23 2.1E-27 167.4 7.4 86 342-428 1-86 (87)
39 pfam01225 Mur_ligase Mur ligas 99.7 1.2E-17 3E-22 133.9 9.7 76 29-110 1-76 (76)
40 PRK05439 pantothenate kinase; 97.4 0.00028 7.1E-09 47.0 4.7 84 109-192 77-175 (312)
41 PRK00892 lpxD UDP-3-O-[3-hydro 97.2 0.0026 6.5E-08 40.8 8.0 93 1-113 3-95 (343)
42 COG1703 ArgK Putative periplas 96.6 0.0031 8E-08 40.2 4.4 138 103-253 38-203 (323)
43 pfam04613 LpxD UDP-3-O-[3-hydr 94.8 0.13 3.3E-06 29.7 6.6 71 27-109 2-72 (72)
44 PRK12724 flagellar biosynthesi 94.8 0.22 5.5E-06 28.3 7.8 84 320-416 273-367 (432)
45 COG1419 FlhF Flagellar GTP-bin 94.8 0.32 8.1E-06 27.2 9.2 15 33-47 27-41 (407)
46 COG2894 MinD Septum formation 94.7 0.036 9.3E-07 33.3 3.6 32 116-147 3-37 (272)
47 pfam03308 ArgK ArgK protein. T 94.1 0.057 1.5E-06 32.0 3.5 134 105-251 18-179 (267)
48 TIGR00750 lao LAO/AO transport 93.9 0.043 1.1E-06 32.8 2.6 136 103-251 25-194 (333)
49 PRK05703 flhF flagellar biosyn 93.5 0.52 1.3E-05 25.8 7.5 104 320-437 261-374 (412)
50 COG1072 CoaA Panthothenate kin 93.4 0.042 1.1E-06 32.9 1.8 77 64-143 17-112 (283)
51 PRK09435 arginine/ornithine tr 93.1 0.18 4.7E-06 28.7 4.7 135 103-250 36-198 (325)
52 PRK06995 flhF flagellar biosyn 92.3 0.86 2.2E-05 24.4 7.6 123 320-456 227-370 (404)
53 PRK09841 cryptic autophosphory 92.0 0.076 1.9E-06 31.2 1.5 17 313-329 426-442 (726)
54 PRK09426 methylmalonyl-CoA mut 91.7 0.99 2.5E-05 24.0 12.8 97 369-467 568-671 (715)
55 PRK00409 recombination and DNA 91.6 0.49 1.2E-05 26.0 5.3 46 288-339 464-509 (780)
56 COG1044 LpxD UDP-3-O-[3-hydrox 91.5 0.69 1.8E-05 25.0 6.0 87 13-111 8-94 (338)
57 TIGR01968 minD_bact septum sit 91.5 0.079 2E-06 31.1 1.2 32 116-147 2-36 (272)
58 TIGR03453 partition_RepA plasm 91.3 0.078 2E-06 31.1 1.0 33 115-147 104-139 (387)
59 cd02029 PRK_like Phosphoribulo 91.0 0.082 2.1E-06 31.0 0.8 30 117-146 1-32 (277)
60 PRK12723 flagellar biosynthesi 90.8 1.2 3.1E-05 23.4 7.6 85 320-416 227-320 (388)
61 TIGR03499 FlhF flagellar biosy 90.8 1.2 3.1E-05 23.4 7.5 78 381-464 193-278 (282)
62 TIGR00692 tdh L-threonine 3-de 90.8 1.2 3.1E-05 23.4 6.7 34 354-390 229-262 (341)
63 cd02028 UMPK_like Uridine mono 90.6 0.14 3.5E-06 29.5 1.7 31 117-147 1-33 (179)
64 PRK13869 plasmid-partitioning 90.2 0.12 3E-06 30.0 1.0 32 116-147 122-156 (405)
65 TIGR01853 lipid_A_lpxD UDP-3-O 90.1 1.1 2.7E-05 23.7 5.9 81 25-116 15-95 (336)
66 PRK11519 tyrosine kinase; Prov 89.8 0.22 5.6E-06 28.2 2.2 34 381-417 525-562 (720)
67 cd03114 ArgK-like The function 89.1 0.23 5.9E-06 28.1 1.9 32 117-148 1-34 (148)
68 TIGR03172 probable selenium-de 89.0 0.15 3.8E-06 29.3 0.8 35 117-151 1-35 (232)
69 COG3367 Uncharacterized conser 88.3 0.23 5.7E-06 28.1 1.4 104 46-150 74-186 (339)
70 pfam07755 DUF1611 Protein of u 88.2 0.092 2.3E-06 30.7 -0.6 109 40-149 32-150 (302)
71 PRK06696 uridine kinase; Valid 87.9 0.59 1.5E-05 25.4 3.3 51 97-147 6-60 (227)
72 TIGR03451 mycoS_dep_FDH mycoth 87.8 2 5.1E-05 22.0 7.9 102 354-462 244-352 (358)
73 PRK12727 flagellar biosynthesi 87.2 2.2 5.5E-05 21.8 8.3 42 1-48 1-42 (557)
74 cd02040 NifH NifH gene encodes 87.2 0.24 6E-06 28.0 0.9 33 116-148 2-36 (270)
75 pfam00448 SRP54 SRP54-type pro 86.7 1.9 4.8E-05 22.2 5.3 30 118-148 7-36 (196)
76 COG2403 Predicted GTPase [Gene 86.4 0.37 9.4E-06 26.8 1.6 34 114-147 125-161 (449)
77 PRK06731 flhF flagellar biosyn 85.6 0.22 5.5E-06 28.3 0.1 31 117-148 80-110 (270)
78 COG1763 MobB Molybdopterin-gua 85.5 0.45 1.1E-05 26.2 1.6 34 115-148 2-37 (161)
79 TIGR02475 CobW cobalamin biosy 85.1 0.32 8.2E-06 27.1 0.8 71 119-196 8-109 (349)
80 TIGR01188 drrA daunorubicin re 85.1 0.34 8.7E-06 27.0 0.9 30 114-143 20-51 (343)
81 cd02025 PanK Pantothenate kina 84.9 0.34 8.6E-06 27.0 0.8 24 117-140 1-26 (220)
82 PRK11670 putative ATPase; Prov 84.8 0.36 9.2E-06 26.8 0.9 33 115-147 107-142 (369)
83 PRK13507 formate--tetrahydrofo 84.4 1.2 3E-05 23.5 3.4 41 106-146 54-100 (587)
84 pfam00485 PRK Phosphoribulokin 84.2 0.35 8.9E-06 26.9 0.6 29 117-145 1-31 (196)
85 cd02026 PRK Phosphoribulokinas 83.8 0.34 8.6E-06 27.0 0.4 24 117-140 1-26 (273)
86 PRK03839 putative kinase; Prov 83.6 0.38 9.8E-06 26.6 0.6 21 117-137 2-24 (180)
87 COG0556 UvrB Helicase subunit 83.6 1.4 3.5E-05 23.0 3.4 49 95-147 14-63 (663)
88 cd03115 SRP The signal recogni 83.5 3.2 8.2E-05 20.6 5.3 31 117-148 5-35 (173)
89 COG1936 Predicted nucleotide k 82.4 0.44 1.1E-05 26.2 0.6 25 117-145 2-28 (180)
90 TIGR01648 hnRNP-R-Q hnRNP-R, Q 82.2 0.65 1.7E-05 25.1 1.3 175 205-410 134-338 (611)
91 pfam06564 YhjQ YhjQ protein. T 82.2 0.46 1.2E-05 26.1 0.6 32 116-147 2-36 (244)
92 TIGR01425 SRP54_euk signal rec 82.0 1 2.6E-05 23.9 2.3 31 118-149 127-157 (453)
93 TIGR00064 ftsY signal recognit 81.9 1 2.6E-05 23.9 2.2 33 114-146 81-115 (284)
94 TIGR01469 cobA_cysG_Cterm urop 81.8 3.2 8.2E-05 20.7 4.8 16 315-330 115-130 (242)
95 PRK00652 lpxK tetraacyldisacch 81.5 0.72 1.8E-05 24.9 1.4 34 114-147 48-85 (334)
96 PRK10818 cell division inhibit 81.5 0.59 1.5E-05 25.4 0.9 33 115-147 2-37 (270)
97 PRK00313 lpxK tetraacyldisacch 81.3 0.81 2.1E-05 24.5 1.6 34 114-147 50-87 (332)
98 CHL00175 minD septum-site dete 81.3 0.61 1.6E-05 25.3 0.9 33 115-147 13-48 (279)
99 KOG0780 consensus 80.9 1.8 4.5E-05 22.4 3.2 30 118-148 107-136 (483)
100 COG4240 Predicted kinase [Gene 80.9 1.4 3.7E-05 22.9 2.7 54 93-146 28-84 (300)
101 pfam00142 Fer4_NifH 4Fe-4S iro 80.5 0.67 1.7E-05 25.1 0.9 33 116-148 1-35 (269)
102 COG0769 MurE UDP-N-acetylmuram 80.4 0.18 4.6E-06 28.8 -2.1 95 116-223 65-162 (475)
103 pfam02606 LpxK Tetraacyldisacc 79.7 1 2.5E-05 24.0 1.6 36 113-148 33-72 (318)
104 PRK12726 flagellar biosynthesi 79.6 0.76 1.9E-05 24.7 0.9 13 482-494 387-399 (407)
105 PRK08674 bifunctional phosphog 79.1 4.6 0.00012 19.6 6.2 96 36-143 27-127 (328)
106 cd01983 Fer4_NifH The Fer4_Nif 79.0 0.71 1.8E-05 24.9 0.6 32 117-148 1-34 (99)
107 PRK13506 formate--tetrahydrofo 78.8 2.1 5.3E-05 21.9 3.0 37 110-146 49-91 (577)
108 TIGR00065 ftsZ cell division p 78.4 2.1 5.4E-05 21.8 2.9 19 116-135 21-39 (365)
109 cd02036 MinD Bacterial cell di 78.1 0.75 1.9E-05 24.8 0.5 31 117-147 1-34 (179)
110 TIGR03018 pepcterm_TyrKin exop 78.0 1.1 2.8E-05 23.7 1.3 33 114-146 34-70 (207)
111 cd02117 NifH_like This family 77.8 1 2.5E-05 24.0 1.1 34 116-149 1-36 (212)
112 cd00477 FTHFS Formyltetrahydro 77.6 2.6 6.5E-05 21.3 3.1 38 109-146 32-75 (524)
113 COG0552 FtsY Signal recognitio 77.4 1.6 4E-05 22.7 2.0 27 462-494 314-340 (340)
114 PRK01906 tetraacyldisaccharide 77.1 1.3 3.3E-05 23.2 1.5 34 114-147 55-92 (339)
115 COG0132 BioD Dethiobiotin synt 76.9 1 2.7E-05 23.8 1.0 34 116-149 3-39 (223)
116 COG0237 CoaE Dephospho-CoA kin 76.6 0.86 2.2E-05 24.4 0.5 27 116-146 3-31 (201)
117 cd05017 SIS_PGI_PMI_1 The memb 76.6 5.4 0.00014 19.2 4.7 59 37-97 38-98 (119)
118 cd02032 Bchl_like This family 76.5 1.1 2.8E-05 23.7 1.0 34 117-150 2-37 (267)
119 PRK06131 dihydroxy-acid dehydr 76.3 5.5 0.00014 19.1 4.7 135 318-469 282-442 (577)
120 PRK13185 chlL protochlorophyll 76.3 2 5.1E-05 22.0 2.3 35 116-150 3-39 (269)
121 PRK10799 putative hydrolase-ox 76.3 5.5 0.00014 19.1 6.0 66 1-77 1-66 (247)
122 cd02023 UMPK Uridine monophosp 76.3 0.8 2E-05 24.6 0.3 23 117-139 1-25 (198)
123 COG3954 PrkB Phosphoribulokina 76.0 1.4 3.5E-05 23.1 1.4 32 115-146 5-38 (289)
124 PRK05480 uridine kinase; Provi 75.7 0.96 2.5E-05 24.0 0.6 25 116-140 7-33 (209)
125 PRK01184 hypothetical protein; 75.6 1 2.6E-05 23.8 0.7 29 116-148 2-32 (183)
126 TIGR01526 nadR_NMN_Atrans nico 75.3 2.1 5.3E-05 21.9 2.2 56 400-464 279-338 (346)
127 PRK13505 formate--tetrahydrofo 75.1 3.1 7.9E-05 20.8 3.0 38 109-146 48-91 (556)
128 PRK11890 phosphate acetyltrans 74.4 6.2 0.00016 18.8 7.0 78 56-138 35-116 (312)
129 PRK13705 plasmid-partitioning 74.3 1.3 3.2E-05 23.3 0.9 32 116-147 107-141 (388)
130 PRK10037 cell division protein 74.2 0.96 2.4E-05 24.1 0.2 31 117-147 6-36 (250)
131 COG0489 Mrp ATPases involved i 74.2 1.4 3.6E-05 23.0 1.1 34 114-147 56-92 (265)
132 PRK10083 putative dehydrogenas 74.2 6.2 0.00016 18.8 8.9 94 354-457 227-324 (339)
133 PRK10751 molybdopterin-guanine 74.1 1.4 3.6E-05 22.9 1.1 33 116-148 3-37 (170)
134 pfam01268 FTHFS Formate--tetra 74.0 3.4 8.7E-05 20.5 3.0 37 110-146 49-91 (555)
135 TIGR03371 cellulose_yhjQ cellu 73.4 1.2 3.1E-05 23.4 0.6 33 116-148 2-37 (246)
136 PRK06761 hypothetical protein; 73.4 1.2 3E-05 23.5 0.5 27 119-146 9-35 (281)
137 COG1110 Reverse gyrase [DNA re 73.4 2.6 6.6E-05 21.2 2.3 49 97-146 82-130 (1187)
138 pfam09140 MipZ ATPase MipZ. Mi 73.3 0.89 2.3E-05 24.3 -0.1 31 117-147 2-35 (261)
139 PRK00090 bioD dithiobiotin syn 72.9 1.4 3.6E-05 22.9 0.9 32 118-149 2-36 (223)
140 cd00550 ArsA_ATPase Oxyanion-t 72.9 1 2.5E-05 24.0 0.1 34 117-150 2-37 (254)
141 cd01136 ATPase_flagellum-secre 72.9 6.7 0.00017 18.6 6.8 17 117-134 74-90 (326)
142 PRK13230 nitrogenase reductase 72.8 1 2.6E-05 23.9 0.1 34 116-149 2-37 (292)
143 PRK08356 hypothetical protein; 72.5 1.3 3.4E-05 23.1 0.7 29 116-148 6-36 (195)
144 COG4555 NatA ABC-type Na+ tran 72.2 2.4 6.1E-05 21.5 1.9 39 98-139 14-54 (245)
145 TIGR01125 TIGR01125 MiaB-like 72.2 7 0.00018 18.5 5.9 60 43-106 44-111 (475)
146 pfam01656 CbiA CobQ/CobB/MinD/ 72.1 0.91 2.3E-05 24.2 -0.3 27 121-147 7-33 (212)
147 cd03116 MobB Molybdenum is an 71.9 1.7 4.4E-05 22.4 1.1 33 116-148 2-36 (159)
148 KOG1324 consensus 71.7 3.6 9.3E-05 20.3 2.7 72 337-417 61-138 (190)
149 PRK09270 frcK putative fructos 71.7 4.3 0.00011 19.8 3.1 32 111-142 29-63 (230)
150 TIGR03201 dearomat_had 6-hydro 71.5 7.2 0.00018 18.4 10.0 96 357-461 243-341 (349)
151 PRK10416 cell division protein 71.3 2 5.2E-05 22.0 1.3 16 479-494 481-496 (499)
152 PRK09422 alcohol dehydrogenase 71.2 7.3 0.00019 18.3 9.4 28 362-392 237-264 (338)
153 PHA02518 ParA-like protein; Pr 71.1 1.4 3.6E-05 23.0 0.5 32 116-147 1-35 (211)
154 COG4152 ABC-type uncharacteriz 71.1 1.7 4.4E-05 22.4 0.9 30 110-139 23-54 (300)
155 COG0541 Ffh Signal recognition 71.0 3.5 9E-05 20.4 2.5 30 118-148 106-135 (451)
156 TIGR02885 spore_sigF RNA polym 70.8 4 0.0001 20.0 2.8 68 320-389 118-195 (231)
157 TIGR01846 type_I_sec_HlyB type 70.6 1.2 3.1E-05 23.4 0.1 23 439-468 653-675 (703)
158 TIGR00507 aroE shikimate 5-deh 70.3 2.9 7.4E-05 20.9 2.0 20 242-261 147-166 (286)
159 PRK13235 nifH nitrogenase redu 70.2 1.4 3.5E-05 23.1 0.3 33 117-149 3-37 (274)
160 COG1245 Predicted ATPase, RNas 70.0 0.42 1.1E-05 26.4 -2.4 92 40-138 29-125 (591)
161 pfam01121 CoaE Dephospho-CoA k 69.7 1.5 3.8E-05 22.8 0.4 24 117-144 2-27 (179)
162 PRK12374 putative dithiobiotin 69.7 1.6 4.1E-05 22.6 0.5 31 118-148 5-38 (231)
163 cd01882 BMS1 Bms1. Bms1 is an 69.7 2.2 5.6E-05 21.7 1.2 27 111-140 35-63 (225)
164 TIGR01007 eps_fam capsular exo 69.5 3.2 8.1E-05 20.7 2.0 34 114-147 18-54 (207)
165 KOG3022 consensus 69.5 2.2 5.5E-05 21.8 1.2 32 116-147 48-82 (300)
166 TIGR02076 pyrH_arch uridylate 69.4 4.1 0.0001 20.0 2.6 20 366-389 96-115 (232)
167 TIGR01825 gly_Cac_T_rel pyrido 69.4 5.6 0.00014 19.1 3.2 25 241-265 175-199 (392)
168 COG5271 MDN1 AAA ATPase contai 69.2 4.7 0.00012 19.6 2.8 47 92-139 444-490 (4600)
169 COG0647 NagD Predicted sugar p 68.8 5.1 0.00013 19.4 2.9 46 365-417 192-237 (269)
170 TIGR02853 spore_dpaA dipicolin 68.8 2.3 5.8E-05 21.6 1.1 151 194-370 83-248 (288)
171 PRK07667 uridine kinase; Provi 68.8 2 5E-05 22.1 0.8 30 116-145 15-46 (190)
172 PRK13232 nifH nitrogenase redu 68.8 1.5 3.8E-05 22.8 0.2 33 117-149 3-37 (273)
173 TIGR02881 spore_V_K stage V sp 68.3 1.5 3.7E-05 22.9 0.1 18 124-141 53-70 (261)
174 cd03109 DTBS Dethiobiotin synt 68.0 1.4 3.6E-05 23.0 -0.1 29 120-148 5-34 (134)
175 pfam05577 Peptidase_S28 Serine 67.5 8.7 0.00022 17.8 6.0 104 30-142 15-135 (433)
176 TIGR00347 bioD dethiobiotin sy 67.4 2 5.1E-05 22.0 0.6 33 120-152 2-37 (187)
177 cd02035 ArsA ArsA ATPase funct 67.2 1.5 3.8E-05 22.8 -0.0 28 122-149 8-35 (217)
178 COG1663 LpxK Tetraacyldisaccha 67.0 3.2 8.1E-05 20.7 1.6 34 114-147 46-83 (336)
179 CHL00072 chlL photochlorophyll 66.0 2.5 6.4E-05 21.4 0.9 34 118-151 3-38 (271)
180 COG2759 MIS1 Formyltetrahydrof 65.9 6.3 0.00016 18.7 3.0 38 108-145 45-88 (554)
181 PRK00081 coaE dephospho-CoA ki 65.9 2 5E-05 22.0 0.4 25 116-144 3-29 (199)
182 TIGR00858 bioF 8-amino-7-oxono 65.9 9.4 0.00024 17.6 5.1 19 441-459 321-339 (378)
183 PHA02519 plasmid partition pro 65.8 1.6 4.2E-05 22.5 -0.1 32 116-147 107-141 (387)
184 PRK06201 hypothetical protein; 64.8 8.2 0.00021 18.0 3.4 11 365-375 208-218 (221)
185 PRK09401 reverse gyrase; Revie 64.7 4 0.0001 20.0 1.8 14 405-418 714-727 (1176)
186 TIGR00176 mobB molybdopterin-g 64.7 3 7.6E-05 20.9 1.1 31 117-147 1-33 (165)
187 pfam02374 ArsA_ATPase Anion-tr 64.5 1.9 4.8E-05 22.1 0.0 35 116-150 2-38 (304)
188 cd02024 NRK1 Nicotinamide ribo 64.3 2.1 5.3E-05 21.9 0.2 22 117-138 1-24 (187)
189 cd02042 ParA ParA and ParB of 64.1 1.9 4.8E-05 22.2 -0.0 29 120-148 7-35 (104)
190 TIGR02188 Ac_CoA_lig_AcsA acet 63.8 10 0.00026 17.4 5.1 74 40-114 287-368 (643)
191 cd02038 FleN-like FleN is a me 63.4 2.6 6.7E-05 21.2 0.6 31 117-147 1-34 (139)
192 PRK09825 idnK D-gluconate kina 63.3 2 5E-05 22.0 -0.0 21 117-138 8-28 (176)
193 PRK13233 nifH nitrogenase redu 63.3 3.7 9.5E-05 20.2 1.4 34 116-149 3-39 (275)
194 PRK07429 phosphoribulokinase; 63.0 2.6 6.7E-05 21.2 0.5 25 116-140 9-35 (331)
195 COG0572 Udk Uridine kinase [Nu 62.9 2.7 6.8E-05 21.2 0.6 25 116-140 9-35 (218)
196 cd03215 ABC_Carb_Monos_II This 62.8 1.3 3.2E-05 23.3 -1.1 47 90-139 2-52 (182)
197 TIGR03015 pepcterm_ATPase puta 62.8 11 0.00027 17.3 5.8 43 94-138 24-68 (269)
198 cd02022 DPCK Dephospho-coenzym 62.2 2.3 5.9E-05 21.6 0.2 25 117-145 1-27 (179)
199 TIGR01969 minD_arch cell divis 62.1 2.7 6.9E-05 21.1 0.5 26 122-147 10-35 (258)
200 TIGR00235 udk uridine kinase; 62.1 2.6 6.6E-05 21.3 0.4 24 116-139 11-40 (220)
201 COG2216 KdpB High-affinity K+ 61.8 11 0.00028 17.2 8.2 65 402-470 456-520 (681)
202 PRK00411 cdc6 cell division co 61.6 5.8 0.00015 19.0 2.1 36 105-141 46-83 (394)
203 cd02037 MRP-like MRP (Multiple 61.5 2.2 5.5E-05 21.8 -0.1 32 117-148 1-35 (169)
204 KOG0950 consensus 61.3 11 0.00027 17.2 3.4 86 36-130 517-602 (1008)
205 pfam05736 OprF OprF membrane d 61.1 5.5 0.00014 19.1 1.9 23 1-23 1-23 (184)
206 cd02034 CooC The accessory pro 60.9 2.2 5.7E-05 21.7 -0.1 31 118-148 2-34 (116)
207 PRK07721 fliI flagellum-specif 60.8 12 0.0003 17.0 6.5 27 13-39 6-32 (435)
208 TIGR02928 TIGR02928 orc1/cdc6 60.4 5.7 0.00014 19.1 1.9 47 96-143 23-73 (383)
209 PRK13540 cytochrome c biogenes 60.3 2.9 7.4E-05 20.9 0.4 29 111-139 23-53 (200)
210 PRK09372 ribonuclease activity 60.2 12 0.0003 17.0 4.3 17 368-387 47-63 (160)
211 pfam02696 UPF0061 Uncharacteri 59.8 10 0.00026 17.4 3.1 21 206-227 173-193 (487)
212 TIGR01281 DPOR_bchL light-inde 59.8 3.3 8.3E-05 20.6 0.6 32 117-148 2-35 (275)
213 TIGR03029 EpsG chain length de 59.6 6.8 0.00017 18.5 2.2 29 116-144 104-135 (274)
214 cd05197 GH4_glycoside_hydrolas 59.5 12 0.00031 16.9 3.7 14 60-74 68-81 (425)
215 pfam07085 DRTGG DRTGG domain. 59.1 12 0.00031 16.9 7.0 68 370-450 32-100 (105)
216 TIGR01771 L-LDH-NAD L-lactate 58.9 10 0.00027 17.3 3.0 24 434-457 275-301 (302)
217 cd03231 ABC_CcmA_heme_exporter 58.3 2.9 7.3E-05 21.0 0.1 28 112-139 23-52 (201)
218 PTZ00301 uridine kinase; Provi 58.2 3.7 9.4E-05 20.3 0.6 28 114-141 2-32 (210)
219 PRK12323 DNA polymerase III su 57.6 4.2 0.00011 19.9 0.8 22 118-139 41-64 (721)
220 PRK06762 hypothetical protein; 57.1 4 0.0001 20.1 0.6 66 116-188 3-74 (166)
221 cd02033 BchX Chlorophyllide re 56.9 5.6 0.00014 19.1 1.4 35 115-149 31-67 (329)
222 COG3044 Predicted ATPase of th 56.8 13 0.00034 16.6 3.9 21 42-62 27-47 (554)
223 PRK08770 DNA polymerase III su 56.7 3.8 9.8E-05 20.2 0.5 22 118-139 41-64 (663)
224 PRK13115 consensus 56.5 14 0.00035 16.6 4.4 96 342-453 164-268 (269)
225 COG1192 Soj ATPases involved i 55.2 3.7 9.5E-05 20.2 0.2 30 118-147 8-38 (259)
226 TIGR00455 apsK adenylylsulfate 55.0 6.7 0.00017 18.6 1.5 36 112-147 16-53 (187)
227 PRK11889 flhF flagellar biosyn 54.8 14 0.00037 16.4 7.8 14 365-378 304-317 (436)
228 PRK13236 nitrogenase reductase 54.8 6 0.00015 18.9 1.2 37 114-150 5-43 (295)
229 TIGR02640 gas_vesic_GvpN gas v 54.7 5 0.00013 19.4 0.8 50 93-146 2-51 (265)
230 COG1064 AdhP Zn-dependent alco 54.7 15 0.00037 16.4 7.2 33 356-392 230-262 (339)
231 PRK06315 type III secretion sy 54.6 15 0.00037 16.4 6.4 38 10-47 7-49 (442)
232 TIGR02525 plasmid_TraJ plasmid 54.3 3.5 8.9E-05 20.4 -0.0 19 232-250 140-158 (374)
233 CHL00181 cbbX CbbX; Provisiona 54.1 3.6 9.1E-05 20.4 -0.0 25 118-142 62-88 (287)
234 pfam03205 MobB Molybdopterin g 53.7 5.7 0.00015 19.0 1.0 30 117-146 2-33 (122)
235 PRK06820 type III secretion sy 53.6 15 0.00039 16.3 5.5 13 131-143 104-116 (445)
236 TIGR01763 MalateDH_bact malate 53.6 15 0.00038 16.3 3.1 13 322-334 188-200 (308)
237 TIGR01950 SoxR redox-sensitive 53.5 6.7 0.00017 18.6 1.3 29 315-345 46-74 (142)
238 PRK13541 cytochrome c biogenes 53.5 4.3 0.00011 19.8 0.3 27 113-139 24-52 (195)
239 pfam07015 VirC1 VirC1 protein. 53.4 3.6 9.1E-05 20.4 -0.1 33 116-148 2-37 (231)
240 PRK13234 nifH nitrogenase redu 53.3 6.4 0.00016 18.7 1.2 36 115-150 4-41 (293)
241 COG4586 ABC-type uncharacteriz 53.2 6.7 0.00017 18.6 1.3 39 99-140 37-77 (325)
242 PRK06872 DNA polymerase III su 53.1 4.7 0.00012 19.6 0.5 19 120-138 43-63 (696)
243 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 53.1 4.4 0.00011 19.8 0.3 27 113-139 46-74 (224)
244 PRK13940 glutamyl-tRNA reducta 53.0 16 0.0004 16.2 5.6 11 424-434 365-375 (414)
245 PRK01077 cobyrinic acid a,c-di 52.5 5.5 0.00014 19.1 0.7 31 117-147 7-38 (451)
246 cd03289 ABCC_CFTR2 The CFTR su 52.5 5.2 0.00013 19.3 0.6 39 97-138 15-55 (275)
247 PRK13813 orotidine 5'-phosphat 52.4 16 0.0004 16.1 4.6 33 404-436 180-212 (215)
248 PRK10769 folA dihydrofolate re 52.2 13 0.00033 16.7 2.6 63 340-417 52-114 (159)
249 COG3640 CooC CO dehydrogenase 52.0 5.9 0.00015 19.0 0.8 30 117-146 2-34 (255)
250 PRK11860 bifunctional 3-phosph 52.0 11 0.00029 17.1 2.3 10 49-58 21-30 (662)
251 cd06309 PBP1_YtfQ_like Peripla 51.9 16 0.00041 16.1 4.6 32 241-272 57-88 (273)
252 PRK07003 DNA polymerase III su 51.8 6.2 0.00016 18.8 0.9 57 5-66 52-110 (816)
253 PTZ00164 bifunctional dihydrof 51.4 16 0.00042 16.0 3.6 32 92-123 96-127 (512)
254 TIGR01189 ccmA heme ABC export 50.9 5.7 0.00015 19.0 0.6 29 110-138 21-51 (204)
255 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.9 17 0.00043 16.0 3.1 11 57-67 63-73 (126)
256 PRK05648 DNA polymerase III su 50.8 4.4 0.00011 19.8 0.0 22 118-139 41-64 (705)
257 TIGR01069 mutS2 MutS2 family p 50.7 6.8 0.00017 18.6 1.0 45 284-334 495-539 (834)
258 TIGR01054 rgy reverse gyrase; 50.5 11 0.00027 17.3 2.0 108 35-147 17-134 (1843)
259 PRK08233 hypothetical protein; 50.5 5.6 0.00014 19.1 0.5 23 115-137 3-27 (182)
260 cd03225 ABC_cobalt_CbiO_domain 50.4 5.4 0.00014 19.2 0.4 27 112-138 24-52 (211)
261 PRK13546 teichoic acids export 50.1 5.2 0.00013 19.3 0.3 28 112-139 47-76 (264)
262 PRK08927 fliI flagellum-specif 50.1 17 0.00044 15.9 7.4 13 131-143 97-109 (441)
263 cd03286 ABC_MSH6_euk MutS6 hom 49.9 8.7 0.00022 17.8 1.4 30 113-142 28-61 (218)
264 TIGR00678 holB DNA polymerase 49.8 17 0.00044 15.9 3.3 54 327-388 99-154 (216)
265 PRK07994 DNA polymerase III su 49.7 6.7 0.00017 18.6 0.8 36 31-66 73-110 (643)
266 PRK13768 GTPase; Provisional 49.5 7.4 0.00019 18.3 1.0 30 118-147 5-36 (253)
267 cd03226 ABC_cobalt_CbiO_domain 49.3 5.7 0.00014 19.0 0.4 28 112-139 23-52 (205)
268 TIGR02173 cyt_kin_arch cytidyl 49.1 6.6 0.00017 18.6 0.7 29 117-145 2-32 (173)
269 PRK00023 cmk cytidylate kinase 48.9 6 0.00015 18.9 0.5 30 115-144 4-35 (225)
270 TIGR02397 dnaX_nterm DNA polym 48.8 18 0.00046 15.8 3.1 26 118-144 39-66 (363)
271 PRK11831 putative ABC transpor 48.8 5.6 0.00014 19.1 0.3 28 112-139 31-60 (269)
272 PRK13896 cobyrinic acid a,c-di 48.7 6.7 0.00017 18.6 0.7 31 117-147 5-36 (432)
273 PRK03846 adenylylsulfate kinas 48.6 9.9 0.00025 17.5 1.5 36 111-146 20-57 (198)
274 COG0529 CysC Adenylylsulfate k 48.6 13 0.00032 16.8 2.1 40 108-147 16-57 (197)
275 PRK13650 cbiO cobalt transport 48.4 5.5 0.00014 19.2 0.2 27 113-139 28-56 (276)
276 PRK08853 DNA polymerase III su 48.3 6.1 0.00016 18.8 0.4 34 32-65 74-109 (717)
277 TIGR01313 therm_gnt_kin carboh 48.3 5.1 0.00013 19.3 0.0 22 117-139 3-24 (175)
278 TIGR01287 nifH nitrogenase iro 48.2 8 0.0002 18.1 1.0 31 118-148 3-36 (278)
279 cd00267 ABC_ATPase ABC (ATP-bi 47.8 6.5 0.00017 18.7 0.5 25 113-137 23-49 (157)
280 pfam08433 KTI12 Chromatin asso 47.7 7.3 0.00019 18.3 0.8 32 118-149 2-35 (266)
281 PRK07960 fliI flagellum-specif 47.6 19 0.00048 15.7 6.9 13 131-143 115-127 (455)
282 PRK13537 lipooligosaccharide t 47.6 6.8 0.00017 18.5 0.6 28 112-139 28-57 (304)
283 PRK13477 bifunctional pantoate 47.6 7.2 0.00018 18.4 0.7 30 45-74 23-52 (512)
284 cd03243 ABC_MutS_homologs The 47.3 8.5 0.00022 17.9 1.0 29 115-143 29-61 (202)
285 PRK13849 putative crown gall t 47.3 5.1 0.00013 19.4 -0.1 33 116-148 2-37 (231)
286 COG1618 Predicted nucleotide k 47.3 7.3 0.00019 18.3 0.7 29 117-145 7-37 (179)
287 TIGR01448 recD_rel helicase, R 47.2 18 0.00047 15.7 2.7 60 114-175 364-438 (769)
288 PRK00258 aroE shikimate 5-dehy 47.2 19 0.00049 15.6 7.0 10 357-366 212-221 (275)
289 PRK13652 cbiO cobalt transport 47.1 5.8 0.00015 19.0 0.2 29 111-139 26-56 (277)
290 PRK13538 cytochrome c biogenes 47.0 6.4 0.00016 18.7 0.4 27 112-138 24-52 (204)
291 COG1131 CcmA ABC-type multidru 46.7 6.9 0.00018 18.5 0.5 27 113-139 29-57 (293)
292 PRK10584 putative ABC transpor 46.7 6.3 0.00016 18.8 0.3 28 112-139 33-62 (228)
293 pfam05872 DUF853 Bacterial pro 46.6 8 0.00021 18.1 0.8 30 117-147 26-55 (504)
294 pfam03737 Methyltransf_6 Demet 46.6 19 0.0005 15.6 4.5 25 366-394 46-70 (154)
295 PRK03695 vitamin B12-transport 46.6 6.6 0.00017 18.6 0.4 27 111-137 19-47 (245)
296 cd03278 ABC_SMC_barmotin Barmo 46.5 7.8 0.0002 18.2 0.7 42 366-419 150-192 (197)
297 TIGR02407 ectoine_ectB diamino 46.5 13 0.00033 16.8 1.8 44 291-336 272-320 (413)
298 TIGR00379 cobB cobyrinic acid 46.3 12 0.0003 17.0 1.7 61 312-372 206-276 (464)
299 cd01672 TMPK Thymidine monopho 46.3 9.2 0.00023 17.7 1.1 32 117-148 2-35 (200)
300 PRK00698 tmk thymidylate kinas 46.3 9.5 0.00024 17.6 1.2 32 115-146 3-36 (204)
301 cd03280 ABC_MutS2 MutS2 homolo 46.2 9.8 0.00025 17.5 1.2 29 115-143 28-60 (200)
302 cd03269 ABC_putative_ATPase Th 46.2 6.9 0.00018 18.5 0.4 28 112-139 23-52 (210)
303 PRK11247 ssuB aliphatic sulfon 46.2 6.1 0.00015 18.9 0.1 29 111-139 34-64 (257)
304 pfam03215 Rad17 Rad17 cell cyc 46.0 8.3 0.00021 18.0 0.8 42 94-138 27-70 (490)
305 cd01128 rho_factor Transcripti 46.0 20 0.00051 15.5 4.1 17 124-140 27-43 (249)
306 PRK09473 oppD oligopeptide tra 45.9 6.8 0.00017 18.5 0.4 30 113-142 40-71 (330)
307 KOG1970 consensus 45.8 12 0.00031 16.9 1.6 44 94-138 90-135 (634)
308 TIGR03522 GldA_ABC_ATP gliding 45.5 7.6 0.00019 18.2 0.5 29 111-139 24-54 (301)
309 PRK00230 orotidine 5'-phosphat 45.5 20 0.00052 15.5 4.7 32 404-435 196-227 (231)
310 cd03284 ABC_MutS1 MutS1 homolo 45.3 9.7 0.00025 17.5 1.1 30 114-143 29-62 (216)
311 cd03237 ABC_RNaseL_inhibitor_d 45.2 6.7 0.00017 18.6 0.2 26 114-139 24-51 (246)
312 pfam00920 ILVD_EDD Dehydratase 45.2 20 0.00052 15.4 4.8 19 118-136 83-101 (521)
313 TIGR01522 ATPase-IIA2_Ca calci 45.1 20 0.00052 15.4 5.7 107 314-436 527-645 (856)
314 cd03257 ABC_NikE_OppD_transpor 45.1 6.7 0.00017 18.6 0.2 27 112-138 28-56 (228)
315 COG0003 ArsA Predicted ATPase 44.9 6.1 0.00015 18.9 -0.0 35 116-150 3-39 (322)
316 cd03282 ABC_MSH4_euk MutS4 hom 44.8 11 0.00028 17.2 1.3 30 114-143 28-61 (204)
317 PRK05396 tdh L-threonine 3-deh 44.8 21 0.00053 15.4 7.4 39 352-393 229-267 (341)
318 pfam00488 MutS_V MutS domain V 44.8 10 0.00025 17.5 1.1 28 115-142 42-73 (234)
319 COG0125 Tmk Thymidylate kinase 44.7 11 0.00027 17.3 1.2 32 115-146 3-36 (208)
320 pfam07905 PucR Purine cataboli 44.7 20 0.00051 15.5 2.6 73 26-98 21-107 (122)
321 smart00534 MUTSac ATPase domai 44.6 8.2 0.00021 18.0 0.6 27 117-143 1-31 (185)
322 PRK09099 type III secretion sy 44.6 21 0.00053 15.4 6.6 14 131-144 103-116 (441)
323 PRK13544 consensus 44.5 7.5 0.00019 18.3 0.4 50 356-416 146-199 (208)
324 PRK09580 sufC cysteine desulfu 44.1 7.9 0.0002 18.1 0.5 25 111-135 23-49 (248)
325 PRK04262 hypothetical protein; 43.8 21 0.00055 15.3 2.7 22 366-390 274-295 (346)
326 cd03236 ABC_RNaseL_inhibitor_d 43.7 7.3 0.00019 18.3 0.2 25 115-139 26-52 (255)
327 TIGR00345 arsA arsenite-activa 43.6 6.4 0.00016 18.7 -0.1 30 122-151 6-37 (330)
328 PRK12312 infB translation init 43.3 16 0.0004 16.2 1.9 63 115-184 117-187 (610)
329 PRK05541 adenylylsulfate kinas 43.3 11 0.00027 17.3 1.0 36 112-147 4-41 (176)
330 pfam00994 MoCF_biosynth Probab 43.2 22 0.00056 15.2 4.1 44 93-139 37-80 (140)
331 TIGR03305 alt_F1F0_F1_bet alte 43.2 22 0.00056 15.2 6.8 22 367-390 355-376 (449)
332 PRK13640 cbiO cobalt transport 43.2 8.6 0.00022 17.9 0.5 28 112-139 31-60 (283)
333 PRK10867 signal recognition pa 43.1 15 0.00037 16.4 1.7 32 116-147 101-135 (453)
334 PRK13543 cytochrome c biogenes 43.1 6.8 0.00017 18.5 0.0 51 88-138 7-62 (214)
335 TIGR02130 dapB_plant dihydrodi 43.1 20 0.00051 15.5 2.4 18 56-73 13-30 (275)
336 COG0455 flhG Antiactivator of 43.1 10 0.00026 17.4 0.9 31 116-146 3-37 (262)
337 PRK08472 fliI flagellum-specif 42.9 22 0.00056 15.2 6.2 14 131-144 98-111 (435)
338 cd03283 ABC_MutS-like MutS-lik 42.8 11 0.00027 17.3 1.0 28 115-142 25-56 (199)
339 cd01130 VirB11-like_ATPase Typ 42.7 13 0.00034 16.6 1.4 20 118-137 28-49 (186)
340 pfam00006 ATP-synt_ab ATP synt 42.6 22 0.00057 15.2 6.7 20 48-67 48-68 (213)
341 PRK13651 cobalt transporter AT 42.6 8.2 0.00021 18.0 0.4 37 100-139 21-59 (304)
342 cd03285 ABC_MSH2_euk MutS2 hom 42.5 13 0.00032 16.8 1.3 30 113-142 28-61 (222)
343 cd03246 ABCC_Protease_Secretio 42.4 8.2 0.00021 18.0 0.3 27 112-138 25-53 (173)
344 PRK04195 replication factor C 42.4 18 0.00045 15.8 2.0 42 96-137 20-64 (403)
345 PRK13016 dihydroxy-acid dehydr 42.3 23 0.00058 15.1 5.3 26 19-44 33-58 (577)
346 cd03234 ABCG_White The White s 42.3 8.6 0.00022 17.9 0.4 27 113-139 31-59 (226)
347 PRK13637 cbiO cobalt transport 42.2 7.3 0.00019 18.3 0.1 36 100-138 21-58 (287)
348 TIGR02903 spore_lon_C ATP-depe 42.2 23 0.00058 15.1 5.4 145 101-271 163-329 (616)
349 PRK13542 consensus 42.2 8.5 0.00022 17.9 0.4 50 89-138 15-69 (224)
350 cd03248 ABCC_TAP TAP, the Tran 42.0 8.2 0.00021 18.0 0.3 29 111-139 36-66 (226)
351 TIGR01754 flav_RNR ribonucleot 41.9 21 0.00053 15.4 2.3 66 359-429 61-138 (145)
352 cd03267 ABC_NatA_like Similar 41.9 9 0.00023 17.7 0.5 50 357-417 174-228 (236)
353 cd03250 ABCC_MRP_domain1 Domai 41.8 8.6 0.00022 17.9 0.4 27 111-137 27-55 (204)
354 cd03247 ABCC_cytochrome_bd The 41.6 8.6 0.00022 17.9 0.4 27 112-138 25-53 (178)
355 cd03227 ABC_Class2 ABC-type Cl 41.4 11 0.00027 17.3 0.8 20 115-134 21-42 (162)
356 TIGR01012 Sa_S2_E_A ribosomal 41.3 23 0.0006 15.1 5.5 32 89-120 36-68 (197)
357 TIGR00300 TIGR00300 conserved 41.1 24 0.0006 15.0 4.0 23 444-466 336-358 (418)
358 PRK13632 cbiO cobalt transport 41.1 9.5 0.00024 17.6 0.5 28 112-139 33-62 (273)
359 PRK08691 DNA polymerase III su 41.0 9.4 0.00024 17.6 0.4 35 32-66 74-110 (704)
360 cd00009 AAA The AAA+ (ATPases 41.0 20 0.0005 15.5 2.1 40 103-143 8-49 (151)
361 cd03235 ABC_Metallic_Cations A 41.0 9.1 0.00023 17.7 0.4 49 357-416 153-205 (213)
362 KOG3220 consensus 40.9 11 0.00029 17.1 0.9 25 116-144 2-28 (225)
363 pfam07279 DUF1442 Protein of u 40.9 24 0.00061 15.0 7.1 10 116-125 43-52 (218)
364 cd03268 ABC_BcrA_bacitracin_re 40.7 9.2 0.00024 17.7 0.4 29 111-139 22-52 (208)
365 TIGR00955 3a01204 Pigment prec 40.7 17 0.00042 16.0 1.7 24 114-137 57-82 (671)
366 KOG3347 consensus 40.7 11 0.00029 17.1 0.8 22 117-138 9-32 (176)
367 cd02020 CMPK Cytidine monophos 40.5 9.7 0.00025 17.5 0.5 29 117-145 1-31 (147)
368 TIGR01792 urease_alph urease, 40.5 24 0.00061 15.0 3.1 20 121-140 172-193 (605)
369 TIGR01717 AMP-nucleosdse AMP n 40.4 20 0.00051 15.5 2.1 122 338-487 256-381 (486)
370 cd03281 ABC_MSH5_euk MutS5 hom 40.4 14 0.00035 16.5 1.2 28 115-142 29-60 (213)
371 PRK13536 nodulation factor exp 40.3 10 0.00026 17.4 0.6 28 112-139 30-59 (306)
372 PRK13633 cobalt transporter AT 40.3 9 0.00023 17.7 0.3 28 112-139 34-63 (281)
373 PRK13644 cbiO cobalt transport 40.2 9.3 0.00024 17.6 0.3 29 111-139 24-54 (274)
374 PRK03333 coaE dephospho-CoA ki 39.8 9.4 0.00024 17.6 0.3 20 116-135 2-23 (394)
375 KOG1532 consensus 39.7 17 0.00043 15.9 1.6 28 117-145 24-51 (366)
376 TIGR01356 aroA 3-phosphoshikim 39.5 25 0.00064 14.9 4.7 50 440-489 349-404 (444)
377 pfam04851 ResIII Type III rest 39.5 17 0.00043 16.0 1.6 25 116-141 22-46 (103)
378 PRK13409 putative ATPase RIL; 39.4 3.3 8.5E-05 20.5 -2.0 81 54-139 40-125 (590)
379 COG1748 LYS9 Saccharopine dehy 39.4 25 0.00064 14.9 7.3 10 425-434 335-344 (389)
380 PRK13646 cbiO cobalt transport 39.4 9.7 0.00025 17.5 0.3 37 100-139 21-59 (286)
381 TIGR02539 SepCysS Sep-tRNA:Cys 39.1 25 0.00064 14.8 2.6 155 197-364 43-209 (381)
382 PRK10771 thiQ thiamine transpo 39.1 9.7 0.00025 17.5 0.3 30 110-139 20-51 (233)
383 pfam01210 NAD_Gly3P_dh_N NAD-d 39.1 25 0.00065 14.8 5.4 13 429-441 137-149 (159)
384 PRK13539 cytochrome c biogenes 39.0 8.6 0.00022 17.9 0.0 27 112-138 25-53 (206)
385 cd03228 ABCC_MRP_Like The MRP 38.9 9.8 0.00025 17.5 0.3 49 357-417 117-168 (171)
386 TIGR02069 cyanophycinase cyano 38.9 25 0.00065 14.8 4.6 23 358-380 196-219 (297)
387 cd01078 NAD_bind_H4MPT_DH NADP 38.8 26 0.00065 14.8 7.1 13 356-368 122-134 (194)
388 PRK13112 consensus 38.7 26 0.00065 14.8 5.5 80 342-437 160-246 (279)
389 PRK11629 lolD lipoprotein tran 38.6 10 0.00026 17.4 0.3 27 112-138 32-60 (233)
390 cd03233 ABC_PDR_domain1 The pl 38.6 11 0.00029 17.1 0.6 27 112-138 30-58 (202)
391 PRK13645 cbiO cobalt transport 38.5 9.7 0.00025 17.5 0.2 36 100-138 25-62 (289)
392 PRK07196 fliI flagellum-specif 38.5 26 0.00066 14.8 6.9 13 131-143 95-107 (434)
393 PRK13635 cbiO cobalt transport 38.3 10 0.00025 17.5 0.3 29 111-139 29-59 (279)
394 cd02019 NK Nucleoside/nucleoti 38.3 12 0.0003 17.0 0.6 21 117-137 1-23 (69)
395 PRK08972 fliI flagellum-specif 38.1 26 0.00067 14.7 6.4 14 131-144 100-113 (440)
396 cd03221 ABCF_EF-3 ABCF_EF-3 E 38.1 11 0.00027 17.3 0.4 24 114-137 25-50 (144)
397 COG3172 NadR Predicted ATPase/ 38.0 13 0.00032 16.8 0.7 25 115-139 8-34 (187)
398 TIGR03574 selen_PSTK L-seryl-t 37.5 13 0.00033 16.7 0.7 31 118-148 2-34 (249)
399 PRK13642 cbiO cobalt transport 37.3 10 0.00026 17.4 0.1 28 112-139 30-59 (277)
400 PRK00784 cobyric acid synthase 37.3 15 0.00038 16.3 1.0 26 121-146 11-37 (492)
401 PRK00696 sucC succinyl-CoA syn 37.1 27 0.00069 14.6 7.5 92 358-458 285-387 (388)
402 PRK13636 cbiO cobalt transport 37.0 11 0.00028 17.2 0.3 27 112-138 29-57 (285)
403 pfam00186 DHFR_1 Dihydrofolate 36.7 28 0.0007 14.6 3.1 64 340-417 52-115 (159)
404 pfam09949 DUF2183 Uncharacteri 36.7 28 0.0007 14.6 3.4 33 378-413 60-92 (100)
405 COG4717 Uncharacterized conser 36.5 17 0.00043 16.0 1.2 12 125-136 36-47 (984)
406 PRK06096 molybdenum transport 36.4 28 0.00071 14.6 6.0 46 363-414 217-262 (284)
407 cd03244 ABCC_MRP_domain2 Domai 36.4 12 0.0003 17.0 0.4 37 99-138 17-55 (221)
408 PRK06793 fliI flagellum-specif 36.3 28 0.00071 14.6 5.4 13 131-143 96-108 (432)
409 TIGR02764 spore_ybaN_pdaB poly 36.2 20 0.0005 15.6 1.5 88 356-465 69-164 (198)
410 cd00650 LDH_MDH_like NAD-depen 36.0 28 0.00072 14.5 3.5 11 118-128 4-14 (263)
411 cd03369 ABCC_NFT1 Domain 2 of 35.9 13 0.00034 16.6 0.6 29 111-139 30-60 (207)
412 TIGR01584 citF citrate lyase, 35.8 13 0.00034 16.7 0.5 24 51-74 79-103 (496)
413 PRK08255 salicylyl-CoA 5-hydro 35.6 29 0.00073 14.5 7.4 19 327-345 546-564 (770)
414 cd03293 ABC_NrtD_SsuB_transpor 35.6 11 0.00029 17.1 0.2 26 113-138 28-55 (220)
415 COG1004 Ugd Predicted UDP-gluc 35.4 29 0.00074 14.5 10.3 70 381-466 309-384 (414)
416 cd03255 ABC_MJ0796_Lo1CDE_FtsE 35.3 12 0.0003 17.0 0.2 27 113-139 28-56 (218)
417 cd03265 ABC_DrrA DrrA is the A 35.3 12 0.00031 16.9 0.3 28 112-139 23-52 (220)
418 COG3265 GntK Gluconate kinase 35.3 8.6 0.00022 17.9 -0.5 20 119-139 2-21 (161)
419 KOG0924 consensus 35.2 29 0.00074 14.4 2.5 37 108-148 367-404 (1042)
420 PRK10437 carbonic anhydrase; P 35.2 21 0.00052 15.4 1.5 16 34-49 42-64 (220)
421 cd03214 ABC_Iron-Siderophores_ 35.0 13 0.00033 16.7 0.4 50 357-416 118-171 (180)
422 cd03254 ABCC_Glucan_exporter_l 35.0 13 0.00032 16.8 0.3 28 111-138 25-54 (229)
423 PRK13648 cbiO cobalt transport 34.8 13 0.00033 16.7 0.4 27 112-138 32-60 (269)
424 PRK13641 cbiO cobalt transport 34.8 11 0.00029 17.1 0.1 36 100-138 21-58 (286)
425 KOG1372 consensus 34.7 30 0.00076 14.4 5.1 23 118-145 34-56 (376)
426 cd03287 ABC_MSH3_euk MutS3 hom 34.7 21 0.00053 15.4 1.4 28 115-142 31-62 (222)
427 TIGR02824 quinone_pig3 putativ 34.6 30 0.00076 14.4 8.2 100 352-461 211-326 (334)
428 cd03263 ABC_subfamily_A The AB 34.5 13 0.00033 16.7 0.3 51 356-417 153-206 (220)
429 TIGR00118 acolac_lg acetolacta 34.4 30 0.00076 14.4 4.7 24 441-464 543-566 (593)
430 KOG2792 consensus 34.2 14 0.00035 16.5 0.4 17 421-437 260-276 (280)
431 pfam08353 DUF1727 Domain of un 34.2 30 0.00077 14.3 7.8 94 364-465 3-104 (110)
432 KOG2183 consensus 34.1 30 0.00077 14.3 7.1 109 33-148 69-194 (492)
433 PRK13634 cbiO cobalt transport 34.0 12 0.0003 17.0 0.1 27 112-138 17-45 (276)
434 PRK11264 putative amino-acid A 34.0 13 0.00034 16.6 0.3 27 112-138 24-52 (248)
435 PRK10247 putative ABC transpor 34.0 14 0.00035 16.5 0.4 50 89-138 4-58 (225)
436 PRK09493 glnQ glutamine ABC tr 33.9 13 0.00034 16.6 0.3 27 112-138 24-52 (240)
437 TIGR02177 PorB_KorB 2-oxoacid: 33.8 31 0.00078 14.3 3.1 31 313-345 141-176 (302)
438 PRK13231 nitrogenase reductase 33.8 12 0.00032 16.8 0.1 33 116-149 3-37 (264)
439 PRK10908 cell division protein 33.7 13 0.00032 16.8 0.2 29 111-139 24-54 (222)
440 PRK11701 phnK phosphonates tra 33.6 14 0.00036 16.5 0.4 29 111-139 28-58 (258)
441 PRK06936 type III secretion sy 33.5 31 0.00079 14.3 5.9 41 5-45 5-47 (439)
442 COG0523 Putative GTPases (G3E 33.5 24 0.00061 15.0 1.6 123 116-251 2-157 (323)
443 PRK08099 nicotinamide-nucleoti 33.5 19 0.00049 15.6 1.1 55 400-455 328-401 (411)
444 pfam06675 DUF1177 Protein of u 33.4 28 0.00072 14.5 1.9 16 200-215 77-92 (276)
445 cd03253 ABCC_ATM1_transporter 33.4 14 0.00036 16.5 0.3 29 110-138 22-52 (236)
446 cd04490 PolII_SU_OBF PolII_SU_ 33.3 31 0.00079 14.2 5.1 64 27-128 1-64 (79)
447 cd03251 ABCC_MsbA MsbA is an e 33.2 14 0.00036 16.5 0.3 28 111-138 24-53 (234)
448 PRK09271 flavodoxin; Provision 33.2 31 0.0008 14.2 2.3 35 361-396 63-98 (160)
449 cd03288 ABCC_SUR2 The SUR doma 33.1 15 0.00037 16.4 0.4 37 99-138 34-72 (257)
450 PRK05688 fliI flagellum-specif 33.1 31 0.0008 14.2 6.4 14 131-144 108-121 (451)
451 TIGR00682 lpxK tetraacyldisacc 33.0 18 0.00046 15.8 0.9 29 120-148 41-69 (342)
452 cd03259 ABC_Carb_Solutes_like 33.0 14 0.00035 16.5 0.3 26 113-138 24-51 (213)
453 cd03245 ABCC_bacteriocin_expor 32.9 14 0.00035 16.5 0.3 27 112-138 27-55 (220)
454 TIGR02155 PA_CoA_ligase phenyl 32.9 14 0.00037 16.4 0.4 49 94-142 39-116 (431)
455 TIGR03497 FliI_clade2 flagella 32.8 32 0.00081 14.2 5.9 10 132-141 78-87 (413)
456 TIGR00041 DTMP_kinase thymidyl 32.8 12 0.00032 16.8 0.0 27 119-146 9-36 (211)
457 pfam00670 AdoHcyase_NAD S-aden 32.7 32 0.00081 14.2 6.8 24 51-74 30-53 (162)
458 COG1634 Uncharacterized Rossma 32.7 32 0.00081 14.2 5.7 15 318-332 82-96 (232)
459 TIGR02072 BioC biotin biosynth 32.7 30 0.00077 14.3 2.0 12 367-378 206-217 (272)
460 cd03110 Fer4_NifH_child This p 32.7 14 0.00035 16.5 0.2 20 118-137 2-24 (179)
461 KOG2749 consensus 32.6 32 0.00081 14.2 2.5 56 89-144 76-134 (415)
462 COG1198 PriA Primosomal protei 32.6 32 0.00081 14.2 4.0 141 323-476 487-693 (730)
463 TIGR03011 sulf_tusB_dsrH sulfu 32.6 32 0.00082 14.2 2.4 20 367-389 11-30 (94)
464 cd00884 beta_CA_cladeB Carboni 32.5 26 0.00067 14.7 1.6 17 34-50 33-56 (190)
465 TIGR02702 SufR_cyano iron-sulf 32.3 32 0.00082 14.1 2.1 26 316-341 16-41 (215)
466 TIGR03620 F420_MSMEG_4141 prob 32.3 32 0.00082 14.1 6.7 15 402-416 243-257 (278)
467 cd03217 ABC_FeS_Assembly ABC-t 32.3 16 0.0004 16.1 0.5 50 357-417 125-179 (200)
468 cd03266 ABC_NatA_sodium_export 32.3 15 0.00038 16.3 0.3 29 111-139 27-57 (218)
469 cd03249 ABC_MTABC3_MDL1_MDL2 M 32.3 16 0.0004 16.2 0.5 28 111-138 25-54 (238)
470 pfam09885 DUF2112 Uncharacteri 32.0 33 0.00083 14.1 2.5 23 179-203 53-75 (143)
471 PRK09111 DNA polymerase III su 31.9 31 0.00078 14.3 1.9 23 118-140 48-72 (600)
472 COG1428 Deoxynucleoside kinase 31.9 18 0.00047 15.7 0.7 24 115-138 4-29 (216)
473 PRK11022 dppD dipeptide transp 31.8 15 0.00039 16.3 0.3 28 113-140 31-60 (327)
474 cd03223 ABCD_peroxisomal_ALDP 31.8 16 0.0004 16.1 0.4 47 357-417 112-161 (166)
475 PRK10575 iron-hydroxamate tran 31.8 15 0.00038 16.3 0.3 51 357-417 168-222 (265)
476 PRK13548 hmuV hemin importer A 31.8 16 0.0004 16.2 0.4 27 112-138 25-53 (257)
477 TIGR02533 type_II_gspE general 31.8 33 0.00084 14.1 2.7 24 89-112 23-48 (495)
478 COG1797 CobB Cobyrinic acid a, 31.6 17 0.00043 16.0 0.5 30 117-146 4-34 (451)
479 TIGR01011 rpsB_bact ribosomal 31.5 33 0.00085 14.1 6.0 12 330-341 105-116 (227)
480 KOG3354 consensus 31.4 16 0.00041 16.1 0.4 21 117-138 17-37 (191)
481 pfam03807 F420_oxidored NADP o 31.3 34 0.00086 14.0 4.6 10 407-416 56-65 (93)
482 COG1348 NifH Nitrogenase subun 31.2 18 0.00047 15.7 0.7 33 117-149 3-37 (278)
483 KOG0365 consensus 31.2 29 0.00074 14.5 1.7 30 308-337 196-225 (423)
484 cd03240 ABC_Rad50 The catalyti 31.2 16 0.00042 16.1 0.4 20 114-133 21-42 (204)
485 PRK09544 znuC high-affinity zi 31.1 16 0.00042 16.0 0.4 26 113-138 28-55 (251)
486 TIGR03450 mycothiol_INO1 inosi 31.1 34 0.00086 14.0 3.4 64 59-144 142-207 (351)
487 cd06318 PBP1_ABC_sugar_binding 30.9 34 0.00087 14.0 4.5 74 58-131 46-140 (282)
488 cd03291 ABCC_CFTR1 The CFTR su 30.8 16 0.00041 16.1 0.3 26 113-138 61-88 (282)
489 cd02027 APSK Adenosine 5'-phos 30.8 19 0.00048 15.7 0.7 31 117-147 1-33 (149)
490 cd03213 ABCG_EPDR ABCG transpo 30.8 16 0.00042 16.0 0.4 22 113-134 33-56 (194)
491 TIGR00078 nadC nicotinate-nucl 30.7 34 0.00088 14.0 5.7 89 341-444 148-239 (276)
492 PRK07078 hypothetical protein; 30.7 13 0.00033 16.7 -0.2 24 121-144 250-273 (510)
493 cd05014 SIS_Kpsf KpsF-like pro 30.7 34 0.00088 14.0 4.6 45 36-80 41-87 (128)
494 pfam02056 Glyco_hydro_4 Family 30.7 34 0.00088 14.0 4.3 94 384-492 1-99 (183)
495 cd01363 Motor_domain Myosin an 30.6 26 0.00068 14.7 1.4 37 92-129 2-40 (186)
496 TIGR02648 rep_term_tus DNA rep 30.5 14 0.00035 16.5 -0.1 66 304-370 83-160 (300)
497 cd03252 ABCC_Hemolysin The ABC 30.5 16 0.00041 16.1 0.3 26 113-138 26-53 (237)
498 TIGR00441 gmhA phosphoheptose 30.3 35 0.00089 13.9 4.9 123 364-492 20-173 (186)
499 pfam02223 Thymidylate_kin Thym 30.1 16 0.00042 16.0 0.3 28 124-151 7-34 (186)
500 KOG0410 consensus 30.0 35 0.0009 13.9 2.4 32 97-128 155-193 (410)
No 1
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=997.12 Aligned_cols=463 Identities=39% Similarity=0.599 Sum_probs=423.2
Q ss_pred CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHH
Q ss_conf 743002453023146898899803887676888999998598899984732233343223479709997998-9999999
Q gi|254781102|r 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLF 105 (497)
Q Consensus 27 d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~-~~aL~~l 105 (497)
|.+|+|++.|||+|+||++|||+||.++|||+|+++|+++||++||+|++.. .. ....++|+|.|+|+ +.++..+
T Consensus 1 ~~~~~~l~~~S~~V~~G~~F~A~~G~~~DG~~fi~~A~~~GA~aVv~e~~~~-~~---~~~~~V~~i~~~d~~r~~~~~~ 76 (494)
T TIGR01085 1 DLEVTGLTLDSREVKPGDLFVAIKGTKVDGHDFIEEAIENGAVAVVVEREVD-YV---AGRAGVPVIIVPDLKRHALSSL 76 (494)
T ss_pred CCEEECCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC-CC---CCCCCCEEEEECCHHHHHHHHH
T ss_conf 9603110013001279967897125655848889999872988999806011-27---6434610799623135888999
Q ss_pred HHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC-CCC---CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998276200--2245654306520001233333210232222234544332-355---445767531221111111011
Q gi|254781102|r 106 ASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQ---DNRLTTPSPIYLAKALSYLSS 179 (497)
Q Consensus 106 a~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~-~~~---~~~~TtP~~~~l~~~l~~~~~ 179 (497)
|+.||+.|+. +|||||||||||||++|++++|+.+|++++.+||++.... ... +..+|||++++||+.|++|++
T Consensus 77 A~~fY~~Ps~~l~viGvTGTNGKTtt~~li~~~l~~~G~~tgliGT~g~~~~g~~~~~~~~~~TTP~~~~~q~~L~~~~~ 156 (494)
T TIGR01085 77 AAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLELLGKKTGLIGTIGYRLGGNELIKDPASLTTPEALTLQKTLAEMVE 156 (494)
T ss_pred HHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99973485525168999712874489999999998679708998654530477631266555679971899999999996
Q ss_pred CCCCCCCCCCCHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCC
Q ss_conf 223333356676665554--3104321211123215455432110112234554210000001-----223211125420
Q gi|254781102|r 180 QGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-----ESPAIIYADDAY 252 (497)
Q Consensus 180 ~g~~~~vlEvSS~gl~~~--rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~-----~~~~ViN~Dd~~ 252 (497)
.|++|+|||+|||||.|+ |+.+++|+++|||||++||||||||||+|+.+|.+||+...-+ -+++|+|.||++
T Consensus 157 ~g~~~~v~EvSSHaL~q~TARV~~~~F~~~vFTNl~~DHLDfHgtmEnY~~aK~~LF~~~~~~~~~~~~~~aV~n~dD~~ 236 (494)
T TIGR01085 157 AGAQYAVMEVSSHALAQGTARVEGVDFDAAVFTNLTRDHLDFHGTMENYFAAKAKLFTELGLKSDRRRARFAVINLDDEY 236 (494)
T ss_pred CCCCEEEEEEEHHHHHCCCCEEECCEEEEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 59979999863012421421110211579996078830234033489999999852440013677535661158864544
Q ss_pred HHHHHHHCCCCCCCCCCCC-----CCCCCCCCCEECCCCCCCCCCCCCCCC-EEECCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 0012221023565322222-----333322000000145444321122210-0101223433222110577888775202
Q gi|254781102|r 253 SKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIG 326 (497)
Q Consensus 253 ~~~l~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~l~G~hni~NalaAia~a~~lG 326 (497)
...+.+.......-..... ....+++.........++.+++..+++ .+++++||+|+||++|+|||++++..+|
T Consensus 237 ~~~f~~~~~~~~~~~~~~~~A~~R~~~~~~~~~~~~~~~~G~~~~~~~~~g~~~~~~~~LiG~FNv~N~lAa~a~~~~~g 316 (494)
T TIGR01085 237 GAQFVKRLPKDITVSAITQKADWRGKAQDIKITDSGYSFEGQSFTFETPAGVEFKLHTPLIGRFNVYNLLAALATLLHLG 316 (494)
T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 69998610252257788504212631124011000010345666752467520688753613688999999999999733
Q ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCCCHHHH
Q ss_conf -676763111234433455210001355786023000378689999741211----002344403540266546004689
Q gi|254781102|r 327 -IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPI 401 (497)
Q Consensus 327 -i~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~----~~~~~r~i~V~G~~Gdrd~~kr~~ 401 (497)
++++++.+.|++|+|++||||.|....+++.|||||||+||||+++|.++| .++.+|+|+|||||||||++|||+
T Consensus 317 g~~~~~~~~~l~~~~gv~GRmE~v~~~~~~f~V~VDYAHTPDaLek~L~~lr~~~~~~~~g~L~~vFGcGGdRDr~KRpl 396 (494)
T TIGR01085 317 GIDLEDIVAALEKLRGVPGRMELVDGGQQKFLVIVDYAHTPDALEKVLRTLRAIKLKHKKGRLIVVFGCGGDRDRGKRPL 396 (494)
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH
T ss_conf 88899999898734899873123027899960799714880589999999999984258982799981578998445758
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCC------EEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEE
Q ss_conf 9999986198999908879898989999999834798------0997898999999999658988999944688663584
Q gi|254781102|r 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 (497)
Q Consensus 402 mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~------~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~ 475 (497)
||++|++|||.+|||+||||+|||++|.+||.+|+.+ +.++.||++||++|+++|++||+|||+|||||+||++
T Consensus 397 MG~iA~~~AD~~ilT~DNPR~Edp~~I~~Di~~G~~~~~~~~~~~~i~DR~~AI~~Ai~~A~~gD~VLiAGKGHE~yQi~ 476 (494)
T TIGR01085 397 MGAIAEQLADLIILTSDNPRSEDPEQIIADILAGISEKEKDKDVVIIADRRQAIRKAISNAKAGDVVLIAGKGHEDYQII 476 (494)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 99999982986898368854579799999999714776667515896017899999998404798899961577522565
Q ss_pred CCCEECCCCHHHHHHHHHH
Q ss_conf 4978867998999999844
Q gi|254781102|r 476 TNGEKKMSVDCDIIREILG 494 (497)
Q Consensus 476 ~~~~~~~~~d~~~~~~~l~ 494 (497)
++ ++.||||+|+|+|+|.
T Consensus 477 ~~-~~~~FdD~Evv~~al~ 494 (494)
T TIGR01085 477 GN-EKIPFDDREVVKEALA 494 (494)
T ss_pred CC-EEECCCHHHHHHHHCC
T ss_conf 67-4770187999999809
No 2
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=0 Score=963.88 Aligned_cols=469 Identities=40% Similarity=0.600 Sum_probs=431.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 97678786678988732033556555743002453023146898899803887676888999998598899984732233
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~ 80 (497)
|||++||... .. ....|++|+||++|||+|+||++|||++|+++|||+|+++|+++||+++|++++..
T Consensus 3 ~~l~~ll~~~--------~~--~~~~d~~i~gis~DSR~v~~g~lFval~G~~~DGh~fi~~Ai~~GA~avv~~~~~~-- 70 (481)
T PRK00139 3 MKLRDLLAPL--------KA--DHVLDVEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEPDVE-- 70 (481)
T ss_pred CCHHHHHHHC--------CC--CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC--
T ss_conf 4689986236--------65--67888777799963771899978999166778989999999986997999847767--
Q ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC-CCCC
Q ss_conf 34322347970999799899999999998276200--22456543065200012333332102322222345443-3235
Q gi|254781102|r 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFA 157 (497)
Q Consensus 81 ~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~-~~~~ 157 (497)
.++|+|.|+|+++||+.||+.||++++. ++||||||||||||++|++++|+..|.+++++||.++. ++..
T Consensus 71 -------~~~~~i~V~d~~~al~~la~~~y~~~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~ 143 (481)
T PRK00139 71 -------AAVPVIVVPDLRRALALLAAAFYGNPSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTL 143 (481)
T ss_pred -------CCCCEEEECCHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEE
T ss_conf -------8985999899999999999998708043180899958998434999999999874986314302211418730
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 54457675312211111110112233333566766655543104321211123215455432110112234554210000
Q gi|254781102|r 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 (497)
Q Consensus 158 ~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~ 237 (497)
.+..+|||++++|+++|+.|+++|++|++||+|||||+|+|+++++||+||||||++||||||||+|+|+++|.+||...
T Consensus 144 ~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSShgl~q~Rv~gi~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~ 223 (481)
T PRK00139 144 IPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSSHALDQGRVDGLTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAEL 223 (481)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 36678988768899999999987997799984303555221348875689996576778534378999999999997465
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHH
Q ss_conf 001223211125420001222102356532222233--332200000014544432112221001012234332221105
Q gi|254781102|r 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 (497)
Q Consensus 238 ~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~Na 315 (497)
..+.+|+|.|||++..+.+... .++++|+.. .++++...+.....+..|.+..+++.+++.+|++|+||++|+
T Consensus 224 --~~~~aViN~DD~~~~~~~~~~~---~~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hNv~Na 298 (481)
T PRK00139 224 --GLKAAVINADDEVGARLLAALP---ATVVTYSIEDHGADLRATDIEFSAQGVSFTLVTPWGEGEVESPLIGRFNVSNL 298 (481)
T ss_pred --CCCCEEEECCCHHHHHHHHHCC---CCCCEECCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf --7882499468889999999717---88525404788860899999984896199999589379999678878889879
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 77888775202676763111234433455210001355786023000378689999741211002344403540266546
Q gi|254781102|r 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 (497)
Q Consensus 316 laAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd 395 (497)
++|++++..+|++++++.++|++|+++|||||++.. .++++||+||||||+||+++|++|++++++|+|+|||||||||
T Consensus 299 laAiava~~lGi~~~~i~~~L~~~~~v~GRmE~i~~-~~~~~vivDYAHtP~sl~~~L~~lr~~~~~rli~VfG~gG~Rd 377 (481)
T PRK00139 299 LAAIAALLALGVPLEDILKALAKLRPVPGRMERVGA-GGGPLVIVDYAHTPDALEKVLDALRPHAKGRLICVFGCGGDRD 377 (481)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEC-CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 999999998398989999998349999998689987-9996899976899899999999998764898699989867777
Q ss_pred CCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCE
Q ss_conf 004689999998619899990887989898999999983479--809978989999999996589889999446886635
Q gi|254781102|r 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 (497)
Q Consensus 396 ~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~--~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~ 473 (497)
++|||+||++|.++||++|+|+||||+|+|++|+++|.+|++ ++.+++||++||++|+++|++||+|||+|||||+||
T Consensus 378 ~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i~~g~~~~~~~~i~dR~~AI~~ai~~a~~~d~vliaGKGhE~~q 457 (481)
T PRK00139 378 KGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGITHANAVVIEDRAEAIKYAIALAKPGDVVLIAGKGHEDYQ 457 (481)
T ss_pred CHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCE
T ss_conf 01418999999971998999399989989999999998269879928978999999999985599999999735876668
Q ss_pred EECCCEECCCCHHHHHHHHHHH
Q ss_conf 8449788679989999998443
Q gi|254781102|r 474 IVTNGEKKMSVDCDIIREILGL 495 (497)
Q Consensus 474 ~~~~~~~~~~~d~~~~~~~l~~ 495 (497)
+++ +++.||+|++++||+|+-
T Consensus 458 ~~~-~~~~~f~D~~~~~~~l~~ 478 (481)
T PRK00139 458 IIG-GVKIPFDDREVAREALAE 478 (481)
T ss_pred EEC-CEEECCCHHHHHHHHHHH
T ss_conf 989-998668879999999985
No 3
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=962.26 Aligned_cols=461 Identities=37% Similarity=0.545 Sum_probs=426.3
Q ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 43002453023146898899803887676888999998598899984732233343223479709997998999999999
Q gi|254781102|r 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 (497)
Q Consensus 28 ~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~ 107 (497)
..|..|+.|||+|+||++|||++|.++|||+||++|+++||+++|++++.+. ....++|+|.|+|++++|+.||+
T Consensus 27 ~~~~~it~DSR~V~~G~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~-----~~~~~~~~i~V~d~r~al~~la~ 101 (953)
T PRK11929 27 AATADLRLDSREVAPGDVFVACRGGASDGRAFIDQALARGAAVVIYEAEGAP-----VAPAGCLALPVADLRKALGELAD 101 (953)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCC-----CCCCCCCEEEECCHHHHHHHHHH
T ss_conf 7645565665417999989994528778899999999869979999166444-----46789719997989999999999
Q ss_pred HHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 98276200--224565430652000123333321023222223454433--23554457675312211111110112233
Q gi|254781102|r 108 RLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 (497)
Q Consensus 108 ~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~--~~~~~~~~TtP~~~~l~~~l~~~~~~g~~ 183 (497)
.||++|+. ++||||||||||||++|++++|+..|.+++++||+++.. +...+..+|||++++||++|+.|++.|++
T Consensus 102 ~fy~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~ 181 (953)
T PRK11929 102 EWYGKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGAD 181 (953)
T ss_pred HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98649675887899979997999999999999867998899832454058764467899994899999999999976997
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 33356676665554310432121112321545543211011223455421000000122321112542000122210235
Q gi|254781102|r 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 (497)
Q Consensus 184 ~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~ 263 (497)
+++||+|||||+|+|+++++|++++|||+++||||||||+|+|+++|++||..+ ++.+.+|+|.||++++.+.+.....
T Consensus 182 ~~vmEvSSHgL~q~Rv~gi~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l-~~~~~aViN~Dd~~~~~l~~~~~~~ 260 (953)
T PRK11929 182 AVAMEASSHGLEQGRLDGIRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQW-PPLGAAVINADDPAGERLLASLPAA 260 (953)
T ss_pred EEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 999983306776434208787889994797678665489999999999999874-1086699979888899999871278
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 65322222333322000000145444321122210010122343322211057788877520267676311123443345
Q gi|254781102|r 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 (497)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~ 343 (497)
....+++...+++++...+.....++.|.+.++++.+++.+||+|+||++|+++|++++..+|++++++.++|+.++++|
T Consensus 261 ~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~vp 340 (953)
T PRK11929 261 LLTGYALQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPVD 340 (953)
T ss_pred CEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 58999336787748999999828986899997892799980686312499999999999983999999999886179988
Q ss_pred HHHCCCC--CCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 5210001--355786023000378689999741211002--344403540266546004689999998619899990887
Q gi|254781102|r 344 GRFEFVG--TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 (497)
Q Consensus 344 gR~E~i~--~~~~~~~viiDyahNP~s~~~aL~~l~~~~--~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~ 419 (497)
||||+|. ...+++.|||||||||+|++.+|+++|++. .+|+|+|||||||||++|||+||++|+++||++|+|+||
T Consensus 341 GRmE~v~~~~~~~~~~viVDYAHTpdAl~~~L~~lr~~~~~~~rli~VfGcgGdRD~~KRp~Mg~iA~~~aD~viiT~DN 420 (953)
T PRK11929 341 GRLERVGPTASAQGPLVVVDYAHTPDALARALTALRPVAEANGRLVCVFGCGGNRDKGKRPEMGRIAAELADRVIVTSDN 420 (953)
T ss_pred CCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCCC
T ss_conf 87599615666789669998678989999999999976146980999989878776103489999999849989986899
Q ss_pred CCCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHHHH
Q ss_conf 989898999999983479---8099789899999999965898899994468866358449788679989999998443
Q gi|254781102|r 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 (497)
Q Consensus 420 ~r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~~ 495 (497)
||+|||++|++||++|++ ++.+++||++||++|+++|++||+|||+|||||+||+|+ +++.||||||++|+.|++
T Consensus 421 PR~Edp~~I~~dI~~g~~~~~~~~~i~dR~~AI~~ai~~a~~~D~vliaGKGhE~yQ~i~-~~~~~f~Dre~~~~~~~~ 498 (953)
T PRK11929 421 PRDEAPEDIIDQILAGIPAGARALRQSDRALAIMQAIWMAKPGDVILLAGKGHETYQDIG-GRKLFFDDRQWARLALLL 498 (953)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEC-CEEECCCCHHHHHHHHHH
T ss_conf 899999999999985656688669977999999999984799998999876865637879-996237809999999986
No 4
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=732.03 Aligned_cols=455 Identities=41% Similarity=0.605 Sum_probs=415.3
Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 02453023146898899803887676888999998598899984732233343223479709997998999999999982
Q gi|254781102|r 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 (497)
Q Consensus 31 ~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~ 110 (497)
++++.|||+|++|++|+|++|.++|||+|+.+|+++||.+++++.... .....+|++.|++++.++..+|..+|
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~~------~~~~~~~vi~V~~~~~~~~~~a~~~y 84 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDIK------LAEAGVPVIVVTGTNGKLTTLALAFY 84 (475)
T ss_pred CCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEEECCCCC------CCCCCCCEEEECCCHHHHHHHHHHHC
T ss_conf 576223656376847999732352453440657628977999705555------54567877998685377788899852
Q ss_pred CCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76200--224565430652000123333321023222223454433--23554457675312211111110112233333
Q gi|254781102|r 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 (497)
Q Consensus 111 ~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~--~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~v 186 (497)
..|+. ++||||||||||||+++++++++..|++++.+||.+... .......+|||+++.++++|+.+.++++++++
T Consensus 85 ~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~v 164 (475)
T COG0769 85 GLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAV 164 (475)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 38657851898638785799999999998862982589997766326886345667892178999999999973880999
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 56676665554310432121112321545543211011223455421000000122321112542000122210235653
Q gi|254781102|r 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 (497)
Q Consensus 187 lEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~ 266 (497)
||+|||||.|+|+.++.|+++++||+++||||||+++|+|+.+|..+|. ..+..+.+|+|.||++.........+....
T Consensus 165 mEvssh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~-~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~ 243 (475)
T COG0769 165 MEVSSHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFE-SLPHSGEAVINPDDGHGLDYKERLKNALGD 243 (475)
T ss_pred EEECHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHH-CCCCCCCEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 8850347975786563598864566566665235749999988987764-057887479877880388899999856887
Q ss_pred CCCCCCCCCCCCCC--EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22222333322000--0001454443211222100101223433222110577888775202676763111234433455
Q gi|254781102|r 267 VLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 (497)
Q Consensus 267 ~~~~g~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~g 344 (497)
+++||......... .+.....++.+.+..+++.+++++||+|.||++|+|+|++++..+|+|+++|.++++++++++|
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~G 323 (475)
T COG0769 244 YITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPVPG 323 (475)
T ss_pred EEEECCCCCCCCHHHCCCEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 89968899631212226114213540588637873268604122778999999999998749999999999974689998
Q ss_pred HHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 21000135578602300037868999974121100234440354026654600468999999861989999088798989
Q gi|254781102|r 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 (497)
Q Consensus 345 R~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~ 424 (497)
|||.+... ++.|++||||||+|++++|.+++.+..+|+|+||||+||||.+||+.||+++.+++|.+|+|+||||+|+
T Consensus 324 RmE~v~~~--~~~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR~ed 401 (475)
T COG0769 324 RMELVNIG--GKLVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSED 401 (475)
T ss_pred CEEEECCC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 60687389--9769999534869999999998753498489997766887534303159999855993699189988768
Q ss_pred HHHHHHHHHHCCCC---EEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHHHH
Q ss_conf 89999999834798---099789899999999965898899994468866358449788679989999998443
Q gi|254781102|r 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 (497)
Q Consensus 425 ~~~I~~~i~~g~~~---~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~~ 495 (497)
|+.|.+++.+|+.. +..+.||++||++|+++|+++|+|+++|||||+||++.+ .+.+|+|++++++.|..
T Consensus 402 p~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~-~~~~f~d~~~v~~~l~~ 474 (475)
T COG0769 402 PAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLE-LKRPFDDREVVREALLE 474 (475)
T ss_pred HHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHC-CEEECCCHHHHHHHHHH
T ss_conf 89999999836476641430110999999999863248878996423513563740-35633868999999843
No 5
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=600.64 Aligned_cols=412 Identities=22% Similarity=0.285 Sum_probs=335.6
Q ss_pred CCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 57430024530231468988998038876768889999985988999847322333432234797099979989999999
Q gi|254781102|r 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 (497)
Q Consensus 26 ~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~l 105 (497)
.+....+||+|||+|+||||||||+|+++|||+||++|+++||+++|++++.. ..++|+|+|+|+++||++|
T Consensus 510 ~~~~~~~isiDSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~~--------~~~~p~I~V~Dt~~AL~~l 581 (953)
T PRK11929 510 LKEISGAVSTDSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQVA--------DVALPQLVLGDTLAALGRM 581 (953)
T ss_pred HHHHCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC--------CCCCCEEEECCHHHHHHHH
T ss_conf 78761856743773688988999714877779999999986997999925666--------6788979968989999999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9998276200224565430652000123333321023222-223454433235544576753122111111101122333
Q gi|254781102|r 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 (497)
Q Consensus 106 a~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~-~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~ 184 (497)
|++||.+++.++|||||||||||||+|++++|+..+...+ ...|.+++++ .++.| ++|.++ +.+.++
T Consensus 582 A~~~r~~~~~~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN-----~iGvP--ltll~l-----~~~~~~ 649 (953)
T PRK11929 582 ATAWRSSFSLPVIAITGSNGKTTTKEMIAAILAQWQGDDGRVTATEGNFNN-----EIGVP--LTLLRL-----RARHRA 649 (953)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-----CCCCC--HHHHCC-----CCCCHH
T ss_conf 999997579978999678850789999999998517778438855674378-----66671--787579-----963465
Q ss_pred CCCCCC-HHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 335667-66655543104-3212111232154554321101122345542100000012232111254200012221023
Q gi|254781102|r 185 VSVEAS-SHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 (497)
Q Consensus 185 ~vlEvS-S~gl~~~rl~~-i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~ 262 (497)
+|+|++ ||..+..++.. ++||++|||||+++|||+|||+|+|+++|++||+. +++++++|+|.||+++..+.+.+..
T Consensus 650 aVlEmGms~~GEI~~L~~i~~PdiaVITNIg~aHLe~fgs~e~Ia~aK~eIf~~-l~~~g~aIlN~DD~~~~~~~~~~~~ 728 (953)
T PRK11929 650 AVFELGMNHPGEIARLAAIAAPTVALVTNAQREHQEFLHSVEAVARANGALINA-LPEDGIAVVNGDDPYAAIWAKLAGA 728 (953)
T ss_pred HHHHHCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHCC
T ss_conf 787652896226998606258977887445699876618999999999999831-5879799993886889999998457
Q ss_pred CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56532222233-33220000001454443211222100101223433222110577888775202676763111234433
Q gi|254781102|r 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 263 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
.....++++.+ ..+++...+.....+..+.+.++++.+++.+|++|.||++|+++|++++..+|++++++.++|.+|++
T Consensus 729 ~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~ 808 (953)
T PRK11929 729 RRVLRFGLSLQPGLDVYAEDIVTQAAGTLCFVVTPAGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQA 808 (953)
T ss_pred CCEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 87599985258987689999898689649999978956999956897999999999999999939999999999866999
Q ss_pred HHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC---CCCHHHHHHHHHHH-HCCEEEEC
Q ss_conf 45521000135578602300-037868999974121100234440354026654---60046899999986-19899990
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALD-LADIAIVT 416 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdr---d~~kr~~mg~~a~~-~ad~vi~t 416 (497)
++||||++.. .++.++|+| ||+||+||+++|++|..++.+|+|+|||.|.|= ...-...+|+.+.+ ..|.+++.
T Consensus 809 ~~gR~e~~~~-~~g~~iIDDsYNANP~Sm~aAl~~L~~~~~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~v 887 (953)
T PRK11929 809 VKGRMQRRQL-SDGTVIIDDTYNANPDSMRAAIDVLARLPGPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITL 887 (953)
T ss_pred CCCCCEEEEE-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998789995-799799997848889999999999852879986999848500245789999999999997599999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 88798989899999998347980997898999999999658988999944
Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
. |....+.+.. +.....+..|..++++...+..++||+||+=|
T Consensus 888 G-----~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~l~~~d~VLVKG 930 (953)
T PRK11929 888 G-----EASRDAAHAF--GKAARACFASVDEIIAALRGLLPSSDIVLIKG 930 (953)
T ss_pred C-----HHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 6-----5799998656--84657883999999999985589999999971
No 6
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=0 Score=598.91 Aligned_cols=417 Identities=23% Similarity=0.321 Sum_probs=332.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 66789887320335565557430024530231468988998038876768889999985988999847322333432234
Q gi|254781102|r 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~ 87 (497)
...+.+++++- +...|++|++|++|||+|+|||+|||++|+++|||+||++|+++||+++|++++.+
T Consensus 6 l~~ia~~~~g~----l~~~d~~i~~i~~DSR~v~~g~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~~--------- 72 (452)
T PRK10773 6 LSQLADILNAE----LQGADITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADQAKAAGAGALLVSRPLD--------- 72 (452)
T ss_pred HHHHHHHHCCE----EECCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC---------
T ss_conf 99999986999----98898157789965871799988999447989979999999986998999847668---------
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 79709997998999999999982762002245654306520001233333210232222234544332355445767531
Q gi|254781102|r 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 (497)
Q Consensus 88 ~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~ 167 (497)
.++|+++|+|+++||+.+|.++|..++.++||||||||||||++|++++|+..|..++..|+.+ +. +++|
T Consensus 73 ~~~~~i~V~d~~~al~~la~~~~~~~~~~vIgITGSnGKTTtk~~i~~iL~~~g~~~~t~gn~n---~~-----iG~p-- 142 (452)
T PRK10773 73 IDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLN---ND-----IGVP-- 142 (452)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC---CC-----CCCC--
T ss_conf 9999899899999999999987515997589999169962599999999997288412456526---88-----7866--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCH-H-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 221111111011223333356676-6-65554310432121112321545543211011223455421000000122321
Q gi|254781102|r 168 IYLAKALSYLSSQGVTHVSVEASS-H-GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 (497)
Q Consensus 168 ~~l~~~l~~~~~~g~~~~vlEvSS-~-gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~V 245 (497)
+++.++ ....+++|+|+++ | |....+.+.++||++|||||++||||+|||+|+|+++|++||+.+ ++++.+|
T Consensus 143 ~tl~~~-----~~~~~~~v~E~g~~~~gei~~~~~~~~pdiaviTNI~~dHLd~~gs~e~~~~aK~~Lf~~l-~~~g~~I 216 (452)
T PRK10773 143 LTLLRL-----TPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGL-PENGIAI 216 (452)
T ss_pred HHHHCC-----CCHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCC-CCCCEEE
T ss_conf 076507-----9213357853237985356766400266759998424776540576999999999998178-8798999
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 112542000122210235653222223--333220000001454443211222100101223433222110577888775
Q gi|254781102|r 246 IYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 (497)
Q Consensus 246 iN~Dd~~~~~l~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~ 323 (497)
+|.||+.+..+.+..... .+++|+. ...+++..++.....+..|.+..+++.+++.+|++|+||++|+++|++++.
T Consensus 217 lN~Dd~~~~~~~~~~~~~--~v~~~~~~~~~~d~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hnv~NalaAiava~ 294 (452)
T PRK10773 217 MNADNNDWLNWQSVIGSR--KVWRFSPNAANSDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAM 294 (452)
T ss_pred EECCCHHHHHHHHHHCCC--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 979876799999983798--289980687776189999999189418999967951899970761768998999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCHH
Q ss_conf 20267676311123443345521000135578602300-0378689999741211002344403540266546---0046
Q gi|254781102|r 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKR 399 (497)
Q Consensus 324 ~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd---~~kr 399 (497)
.+|++++++.++|++|+++|||||.+... +|.++|+| |||||+||+++|+.|+.++ +|+|+|+|.|+|=. ..-.
T Consensus 295 ~lG~~~~~i~~~L~~~~~v~GRme~i~~~-~g~~iIdDsYNAnP~Sm~aal~~l~~~~-~~ki~VLGdM~ELG~~s~~~H 372 (452)
T PRK10773 295 SVGATLDAVKAGLANLKAVPGRLFPIQLA-ENQLLLDDSYNANVGSMTAAVQVLAEMP-GYRVLVVGDMAELGAESEACH 372 (452)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCEEEEECC-CEEEEEEECCCCCHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCHHHHHH
T ss_conf 85999999999997289986740799738-7089997425699799999999997577-976999877377285789999
Q ss_pred HHHHHHHHH-HCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCE--EEEEC
Q ss_conf 899999986-19899990887989898999999983479809978989999999996589889--99944
Q gi|254781102|r 400 PIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--LVVAG 466 (497)
Q Consensus 400 ~~mg~~a~~-~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDv--ili~G 466 (497)
..+|+.+.+ ..|.+++.. +..+ .+...........|..+.+....+..+++|+ ||+=|
T Consensus 373 ~~v~~~~~~~~id~v~~vG-----~~~~----~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~vLvKG 433 (452)
T PRK10773 373 RQVGEAAKAAGIDRVLSVG-----KLSQ----AISTASGVGEHFADKTALIARLKALLAEQQVITILVKG 433 (452)
T ss_pred HHHHHHHHHCCCCEEEEEC-----HHHH----HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999999976999999988-----7899----99874187633699999999999887449984899985
No 7
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=594.69 Aligned_cols=410 Identities=25% Similarity=0.347 Sum_probs=334.6
Q ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCH-HHHHHHHHHHHHCCC
Q ss_conf 3023146898899803887676888999998598899984732233343223479709997998-999999999982762
Q gi|254781102|r 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKH 113 (497)
Q Consensus 35 ~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~-~~aL~~la~~~~~~~ 113 (497)
+|||+|+||+|||||+|+++|||+||++|+++||.|+|++++++.+..........|+|+|+|| +.||++||++++.+.
T Consensus 1 ~DSR~~~~g~LF~AL~G~~fDGH~F~~~A~~~GA~Avl~~r~v~~e~~~~~~~~~~~~~~V~DtV~~AL~~lA~~~~~~~ 80 (462)
T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREVESEVVKYNPDNGLPQILVDDTVLAALQALASAKREKF 80 (462)
T ss_pred CCCCEECCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 98643158704750688998634679999857966999970777057510379985289980658999999999999743
Q ss_pred CCC--EEEEEEEECCCEEHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 002--245654306520001233333210232-22223454433235544576753122111111101122333335667
Q gi|254781102|r 114 PEN--ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 (497)
Q Consensus 114 ~~~--vIgITGTnGKTTt~~~l~~iL~~~g~~-~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvS 190 (497)
+.+ +||||||+||||||+|+++||+..+.. -.+.-|.|+++|..+ . |++|.+. ..+.+|+|+||
T Consensus 81 ~~~~~~igiTGS~GKTTtKEm~~~iL~~~~~~~~aV~~t~GN~Nn~iG-----l--PltlL~~-----~~~~~~aV~Em- 147 (462)
T TIGR01143 81 SAKRRVIGITGSSGKTTTKEMLAAILSHKYKDSEAVLATPGNFNNEIG-----L--PLTLLRA-----TEDHDYAVLEM- 147 (462)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHH-----H--HHHHHCC-----CCCCCEEEEEE-
T ss_conf 997589998568960679999999998535975323624887676135-----6--7887507-----88880599984-
Q ss_pred HHHH-HHHHHCC----CCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 6665-5543104----321211123215455432---1101122345542100000012232111254200012221023
Q gi|254781102|r 191 SHGL-DQHRLDG----IKLIAGSFTNLGRDHIDY---HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 (497)
Q Consensus 191 S~gl-~~~rl~~----i~~diaviTNI~~dHLd~---~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~ 262 (497)
|. .+|.+.. ++|||+|||||+++||+. |||++.|+++|.+||++ +++++.+|+|.||+++..+.+....
T Consensus 148 --G~s~~GEI~~L~~i~~P~ia~itNi~~AHl~~F~~Fgs~~~Ia~aK~EI~~~-~~~~~~a~~n~d~~~~~~~~~~~~~ 224 (462)
T TIGR01143 148 --GASHPGEIAYLAEIAKPDIALITNIGEAHLEGFGDFGSLEGIAEAKGEILQG-LKENGIAVINADDPALAKFKKRLKI 224 (462)
T ss_pred --CCCCCCCHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEECCCCHHHHHHHHHCCC
T ss_conf --3898873789998619986999170478761157875389999999999707-8977589853525688999984111
Q ss_pred CCCC-CCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCEEECCCC-CCCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5653-22222333--3220000001454443211222100101223-43322-211057788877520267676311123
Q gi|254781102|r 263 AGCR-VLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEF-QVYNALVAAGLCIAIGIDSALVLEHLE 337 (497)
Q Consensus 263 ~~~~-~~~~g~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~-l~G~h-ni~NalaAia~a~~lGi~~~~i~~~L~ 337 (497)
.+.. +++||.++ .+++..++.+...+..|++.++++.+.+.+| ++|.| |+.|++||+|++..+|++++++.++|.
T Consensus 225 ~~~~~~~~Fg~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~~v~LP~~~G~h~n~~NalaA~Ala~~lG~~~~~~~~gL~ 304 (462)
T TIGR01143 225 LNKAKVLSFGLEGKYADVSAEDVSLSELGTGFTLVTPGGEIEVELPILLGRHPNVENALAAAALALALGLPLEEIAEGLS 304 (462)
T ss_pred CCCCCEEEECCCCCCCCEEEECCEECCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 57864788147776343688432121533358998637089998311208818899999999999980988889998976
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC-C---CCCCEEEECCCC---CCCCHHHHHHHHHHHH
Q ss_conf 443345521000135578602300-0378689999741211002-3---444035402665---4600468999999861
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-S---GRIIVVFGCGGD---RDQGKRPIMGKIALDL 409 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~-~---~r~i~V~G~~Gd---rd~~kr~~mg~~a~~~ 409 (497)
.+++++||++.+.. .+|.+||+| ||+||+||++||+.|..++ . +|+|+|+|.|+| ....-....|+.|...
T Consensus 305 ~~~~~~gR~~~~~~-~~g~~~IdD~YNAnp~Sm~AAl~~L~~~~~~~E~g~~~~VLG~M~ELG~~s~~~H~~vg~~a~~~ 383 (462)
T TIGR01143 305 ELKPVKGRLEVIQT-KKGLTLIDDTYNANPDSMRAALDALARFPGKGEVGKKILVLGDMLELGELSEELHAEVGRYAAAL 383 (462)
T ss_pred HCCCCCCCEEEEEE-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 42788765078986-48748984413598899999999961388888635468998384531179999999999999862
Q ss_pred -CCEEEECCCCCCCCCH-----HHHHHHHHHC---CCC-EEEECCHHHHHHHHH----HHCCCCCEEEEECCC
Q ss_conf -9899990887989898-----9999999834---798-099789899999999----965898899994468
Q gi|254781102|r 410 -ADIAIVTDDNPRSEDP-----EKIRAEIIHG---IPG-FIEKGNRIEAIRTAI----EMLNKQDVLVVAGKG 468 (497)
Q Consensus 410 -ad~vi~t~d~~r~e~~-----~~I~~~i~~g---~~~-~~~~~dr~eAi~~A~----~~a~~gDvili~GkG 468 (497)
.|.+++.. ++. ..|.+....+ +.. .....|..+-++.-. ...++||+||+ ||
T Consensus 384 ~~~~~~~~G-----~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~l~~~L~~~~~~~~~~~~~vLv--KG 449 (462)
T TIGR01143 384 GIDLVFLVG-----EEASPNTVAVIADSLGSGEKLVKKQGKHFADKDELLAFLKDLNELQVGEGDVVLV--KG 449 (462)
T ss_pred CCCEEEEEC-----CCCCCHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEE--EC
T ss_conf 873899847-----7335026999999855896504688875179889999987533112578608999--53
No 8
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=0 Score=545.35 Aligned_cols=434 Identities=17% Similarity=0.181 Sum_probs=335.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCC--CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 678988732033556555743002453023146--898899803887676888999998598899984732233343223
Q gi|254781102|r 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~--~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~ 86 (497)
..+..+++.-........|..|+.|++|||.+. +|+|||||+|+++|||+||++|+++||+++|+++..... ..
T Consensus 6 ~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~----~~ 81 (824)
T PRK11930 6 EELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDL----ME 81 (824)
T ss_pred HHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCC----CC
T ss_conf 99998639788578888883236399358876579986899956788887999999998899099994566554----55
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47970999799899999999998276200224565430652000123333321023222223454433235544576753
Q gi|254781102|r 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 (497)
Q Consensus 87 ~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~ 166 (497)
..+.++++|+||++||++||++||+++..+||||||||||||||+|++++|+..+.... |.++++|..+ .
T Consensus 82 ~~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~---T~gn~Nn~IG-----v-- 151 (824)
T PRK11930 82 KKPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPRSYNSQIG-----V-- 151 (824)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEC---CCCCCCCCCC-----H--
T ss_conf 78877899898999999999999974899899994999789999999999745786852---8876687425-----8--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 122111111101122333335667-66655543104-3212111232154554321101122345542100000012232
Q gi|254781102|r 167 PIYLAKALSYLSSQGVTHVSVEAS-SHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 (497)
Q Consensus 167 ~~~l~~~l~~~~~~g~~~~vlEvS-S~gl~~~rl~~-i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ 244 (497)
|++|+++ .++.+++|+|+. ||.-+..+|.. ++|+++|||||+++|+|.|||+|+++++|++||.. .+.+
T Consensus 152 PLTll~l-----~~~~e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~----~~~~ 222 (824)
T PRK11930 152 PLSVWQM-----NEEHELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKD----CDVI 222 (824)
T ss_pred HHHHHCC-----CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHC----CCCE
T ss_conf 9998649-----845808999907898146999953527999999075098766458999999999997621----7817
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1112542000122210235653222223--33322000000145444321122210010122343322211057788877
Q gi|254781102|r 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 (497)
Q Consensus 245 ViN~Dd~~~~~l~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a 322 (497)
++|.||+........... ..+.++|+. ...+.+...+....++..+.+.+++..+.+.+|++|.||++|+++|++++
T Consensus 223 i~n~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava 301 (824)
T PRK11930 223 IYNGDNEEISNCIHKSNL-TRREIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVA 301 (824)
T ss_pred EEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 994685789999976336-7628998347866534666543058816999996890699993699889999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCC---
Q ss_conf 520267676311123443345521000135578602300-0378689999741211002-34440354026654600---
Q gi|254781102|r 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG--- 397 (497)
Q Consensus 323 ~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~~--- 397 (497)
..+|++++.|.++|++|+|++||||+.. ..+|.++|+| ||+||+||++||++|...+ .+|+|+|||.|.+-...
T Consensus 302 ~~lGv~~~~i~~~L~~~~p~~~Rlev~~-g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ 380 (824)
T PRK11930 302 LYLMYSADQITKRFARLEPVEMRLEVKE-GINNCTLINDSYNSDLASLDIALDFLERRKQSKKKTLILSDILQSGQSPEE 380 (824)
T ss_pred HHCCCCHHHHHHHHHHCCCCCCEEEEEE-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHH
T ss_conf 9839999999999841896545137999-799809995666699899999999997403578569998774432876078
Q ss_pred HHHHHHHHHH-HHCCEEEECCCCCCCCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHCCCCCEEEEEC--------
Q ss_conf 4689999998-61989999088798989899999998347--980997898999999999658988999944--------
Q gi|254781102|r 398 KRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-------- 466 (497)
Q Consensus 398 kr~~mg~~a~-~~ad~vi~t~d~~r~e~~~~I~~~i~~g~--~~~~~~~dr~eAi~~A~~~a~~gDvili~G-------- 466 (497)
--.+.|+.+. ...|.+|... ..|.+... -+ .......+..++++.-....-++|+|||-|
T Consensus 381 ly~~Vg~l~~~~~i~~ligiG--------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~e~ 451 (824)
T PRK11930 381 LYRKVAQLISSAKINRVIGIG--------EEISSEAK-KFEGIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQFEQ 451 (824)
T ss_pred HHHHHHHHHHHCCCCEEEEEC--------HHHHHHHH-HCCCCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCHHH
T ss_conf 999999999976887899818--------89999998-645776589568999974274113689779980554566899
Q ss_pred -------CCCCCCEEEC
Q ss_conf -------6886635844
Q gi|254781102|r 467 -------KGHETVHIVT 476 (497)
Q Consensus 467 -------kG~e~~~~~~ 476 (497)
|.||++.+|-
T Consensus 452 i~~~l~~~~h~T~lEId 468 (824)
T PRK11930 452 ISERLELKVHETILEIN 468 (824)
T ss_pred HHHHHHHCCCCCEEEEE
T ss_conf 99999645588589998
No 9
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=517.99 Aligned_cols=402 Identities=25% Similarity=0.370 Sum_probs=326.0
Q ss_pred CCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
Q ss_conf 43002453023146898899803887676888999998598899984732233343223479709997998999999999
Q gi|254781102|r 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 (497)
Q Consensus 28 ~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~ 107 (497)
..++++++|||+|.||++|+||+|+++|||+|+.+|+++||.++++++++..+..+ . +++.|.|++.||++||+
T Consensus 22 ~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~-----~~~~V~d~~~al~~la~ 95 (451)
T COG0770 22 VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-L-----VVLLVLDTLEALGKLAK 95 (451)
T ss_pred CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-C-----CEEEEHHHHHHHHHHHH
T ss_conf 00106995246678885238716763564221889984597799992576786656-5-----25875999999999999
Q ss_pred HHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98276200224565430652000123333321023222223454433235544576753122111111101122333335
Q gi|254781102|r 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 (497)
Q Consensus 108 ~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vl 187 (497)
+++++.+.++||||||+||||||+|++++|+..|+..... +++++.. ++ |++|.++ ....+|+|+
T Consensus 96 ~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~---gn~Nn~i---Gl----Pltll~~-----~~~~e~~Vl 160 (451)
T COG0770 96 AYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATP---GNFNNEI---GL----PLTLLRL-----PADTEYAVL 160 (451)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCC---CCCCCCC---CC----HHHHHHC-----CCCCCEEEE
T ss_conf 9997369968999589970769999999986368074678---7668654---41----5689747-----776647999
Q ss_pred CCCHHHH-HHHHH----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 6676665-55431----043212111232154554321101122345542100000012232111254200012221023
Q gi|254781102|r 188 EASSHGL-DQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 (497)
Q Consensus 188 EvSS~gl-~~~rl----~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~ 262 (497)
|++ . ..|.+ .-++|++++||||+++||++|||.|+++++|++||.+. ++++.+|+|.|+++...+.....
T Consensus 161 EmG---~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~-~~~g~ai~n~d~~~~~~~~~~~~- 235 (451)
T COG0770 161 EMG---MNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGL-RPEGIAILNADNPLLKNWAAKIG- 235 (451)
T ss_pred ECC---CCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHCC-
T ss_conf 868---9977747888440589889983805999874288999999999998156-87867998786177787776357-
Q ss_pred CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 56532222233-33220000001454443211222100101223433222110577888775202676763111234433
Q gi|254781102|r 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 263 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
..++++||.+ ..+++...+.....+..|++.+++..+.+++|++|+||+.|+++|++++..+|+++++|+++|..+++
T Consensus 236 -~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~ 314 (451)
T COG0770 236 -NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKP 314 (451)
T ss_pred -CCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf -8757997688777525677898388507999806833799945784768999999999999819999999999986378
Q ss_pred HHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCHHHHHHHHHHHH-CCEEEEC
Q ss_conf 45521000135578602300-0378689999741211002344403540266546---00468999999861-9899990
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDL-ADIAIVT 416 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd---~~kr~~mg~~a~~~-ad~vi~t 416 (497)
++||+|++. ..+|.++|+| ||+||+||+++++.+..++..+.|+|+|.|++=. ..-...+++.+.+. .|.+++.
T Consensus 315 ~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~ 393 (451)
T COG0770 315 VKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLV 393 (451)
T ss_pred CCCCCEEEE-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 886633676-4898189973788998999999999963766885799477666385489999999999985695099997
Q ss_pred CCCCCCCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 8879898989999999834798-0997898999999999658988999944
Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~~-~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
.+ .-+. +.+.... .....+..+.++...+..++||+||+-|
T Consensus 394 G~-----~~~~----i~~~~~~~~~~f~~~~~l~~~l~~~l~~gd~vLvKg 435 (451)
T COG0770 394 GE-----LSKA----IAEALGNKGIYFADKEELITSLKALLRKGDVVLVKG 435 (451)
T ss_pred CC-----CHHH----HHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 62-----0699----998657775860777999999998567787899973
No 10
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=0 Score=462.00 Aligned_cols=362 Identities=25% Similarity=0.363 Sum_probs=281.1
Q ss_pred CCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 59889998473223--3343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
.++-.+|++...+. +........++|++-- .++|..+. . ..++||||||||||||+.|++++|+.+|.+
T Consensus 66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~---~e~l~~~~---~---~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459)
T PRK00421 66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR---AEMLAELM---R---LRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH---HHHHHHHH---H---CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999998998599899999999879979889---99999998---2---596499977888611899999999976998
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-222345443323554457675312211111110112233333566----76665554310432121112321545543
Q gi|254781102|r 144 S-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 (497)
Q Consensus 144 ~-~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEv----SS~gl~~~rl~~i~~diaviTNI~~dHLd 218 (497)
+ ..+|.. ..+...+. .....+++|+|+ ||+. ..+|+++|+|||++||||
T Consensus 137 ~~~~iGg~--~~~~~~~~-----------------~~~~~~~~V~E~dE~d~sf~-------~~~P~iavitNI~~DHLD 190 (459)
T PRK00421 137 PTFIIGGI--LNAAGTNA-----------------RLGSSDYFVAEADESDRSFL-------KLHPDIAVVTNIDADHLD 190 (459)
T ss_pred CEEEECCC--CCCCCCCC-----------------CCCCCCEEEEEECCCCCCHH-------HCCCCEEEEECCCHHHHH
T ss_conf 74885753--35566545-----------------25889889999535414364-------458989999179877865
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 2110112234554210000001223211125420001222102356532222233-332200000014544432112221
Q gi|254781102|r 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297 (497)
Q Consensus 219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~i~~~~ 297 (497)
||+|+|+|+++|.+++++ +++++.+|+|.||++.+.+.+.. ..++++||.+ .++++...+.....+..|.+...+
T Consensus 191 ~h~s~e~Y~~ak~~~~~~-~~~~g~~ViN~DD~~~~~l~~~~---~~~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~ 266 (459)
T PRK00421 191 YYGDFEDLKDAFQEFAHN-LPFYGALVACGDDPELRELLPRV---DRPVITYGFSEDADFRAENIRQDGGGSHFDVLREG 266 (459)
T ss_pred HCCCHHHHHHHHHHHHHC-CCCCCCEECCCCCHHHHHHHHHC---CCCCEEECCCCCCCEEEEEEEEECCCEEEEEEECC
T ss_conf 601899999999999971-99547211468798999987743---88600235687666678889994892389998389
Q ss_pred CEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 001-0122343322211057788877520267676311123443345521000135578602300037868999974121
Q gi|254781102|r 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 (497)
Q Consensus 298 ~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l 376 (497)
..+ .++++++|.||++|++||+++|..+|++++.|.++|++|++++||||++.. .++.++|+||||||++++++|+++
T Consensus 267 ~~~~~~~l~l~G~HNv~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v~~-~~gv~~idDYAH~P~~i~a~l~al 345 (459)
T PRK00421 267 EDLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEKGE-VNGVVLIDDYAHHPTEIKATLKAA 345 (459)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEE-CCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 3788999568638899999999999998499999999999753574502799872-288479973568938999999999
Q ss_pred HHCC-CCCCCEEEECCCCCCCCHHHHHHHHHH--HHCCEEEECCCCCCCCCH------HHHHHHHHH-CCCCEEEECCHH
Q ss_conf 1002-344403540266546004689999998--619899990887989898------999999983-479809978989
Q gi|254781102|r 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRI 446 (497)
Q Consensus 377 ~~~~-~~r~i~V~G~~Gdrd~~kr~~mg~~a~--~~ad~vi~t~d~~r~e~~------~~I~~~i~~-g~~~~~~~~dr~ 446 (497)
+++. .+|+|+||.- .|..-.|..|++.+. ..+|.+|+|+++|++|+| +.|++.+.+ |..++..++|++
T Consensus 346 r~~~~~~rii~vfqP--h~~sR~~~~~~e~a~~l~~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~ 423 (459)
T PRK00421 346 RQKYPDKRIVAVFQP--HRYSRTRDLFDEFAEVLSDADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVD 423 (459)
T ss_pred HHHCCCCCEEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 987689966999867--420548999999999987199999888758888765788999999999860898879969999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99999999658988999944688
Q gi|254781102|r 447 EAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 447 eAi~~A~~~a~~gDvili~GkG~ 469 (497)
+|++.+.++|++||+||++|||+
T Consensus 424 ~ai~~~~~~a~~gDvVL~~GaGd 446 (459)
T PRK00421 424 DLAELLADVLQPGDLVLTMGAGD 446 (459)
T ss_pred HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999998589989999979999
No 11
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=393.83 Aligned_cols=320 Identities=20% Similarity=0.280 Sum_probs=238.0
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
..+.++||||||||||||+.|++++|+.+|.++...|++|. |. ++ +...+.+++|+|+||
T Consensus 106 ~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNiG~------------p~-~~-------~~~~~~~~~VlElSS 165 (448)
T PRK03803 106 AAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGNLGT------------PA-LD-------LLSDDVELYVLELSS 165 (448)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC------------HH-HH-------HHCCCCCEEEEECCC
T ss_conf 17898899858998388999999999865983799403276------------13-66-------525888789998664
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 66555431043212111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
++|+. +..++|+++|+|||++||||||+|+|+|.++|.+||... ..+|+|.||+..+.+... ..+.++|+
T Consensus 166 fqL~~--~~~~~p~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~----~~~v~n~Dd~~~~~l~~~----~~~~~~f~ 235 (448)
T PRK03803 166 FQLET--TDQLNAEVATVLNISEDHLDRHGGMLAYHQAKHRIFRGA----KQVVVNRDDALTRPLVAD----GTPCWSFG 235 (448)
T ss_pred CHHHC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHHC----CCCEEEEE
T ss_conf 11203--545686289983587536546338999999987775388----789995860888888654----88579983
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33332200000014544432112221001-01223433222110577888775202676763111234433455210001
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~ 350 (497)
....+......... ++..+........+ ...++++|.||++|+++|++++..+|++.+.|.++|++|+++|||||.+.
T Consensus 236 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~E~v~ 314 (448)
T PRK03803 236 LNAPDFGAFGLREE-DGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRCQWVR 314 (448)
T ss_pred CCCCCCCCCCEEEC-CCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 57765122316953-98399961653214333307676235998999999999829987898998863557120579999
Q ss_pred CCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHH
Q ss_conf 35578602300-03786899997412110023444035402665460046899999986198999908879898989999
Q gi|254781102|r 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 351 ~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~ 429 (497)
. .+|.++|+| .|.||+|+.+||++++....+++|+|+| |-+|.....+ +.+...+....+++- +|+...|.
T Consensus 315 ~-~~Gv~fiNDSKaTN~~at~~Al~~~~~~~~~~iilI~G-G~~K~~d~~~-l~~~~~~~v~~v~l~-----G~~~~~i~ 386 (448)
T PRK03803 315 E-VDGVRYYNDSKGTNVGATLAAIEGLGADIEGKLVLIAG-GQGKGADFSE-LREPVAKYCRAVVLI-----GRDAELIE 386 (448)
T ss_pred E-CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCHHH-HHHHHHHCCEEEEEE-----CCCHHHHH
T ss_conf 6-18889996899899789999999646523686899937-8666668799-999997366099997-----95999999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9998347980997898999999999658988999944688663
Q gi|254781102|r 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 430 ~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
+.+... .+.....+.+|||+.|.+.|++||+||+ ..|---|
T Consensus 387 ~~l~~~-~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPa~aSf 427 (448)
T PRK03803 387 QALGDA-VPLVRAATLEEAVTQAAELAQPGDAVLL-SPACASL 427 (448)
T ss_pred HHHCCC-CCEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 975068-9879949999999999985789898998-9744020
No 12
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=382.05 Aligned_cols=369 Identities=21% Similarity=0.273 Sum_probs=245.9
Q ss_pred CCCEEEEECCCCCCC------CCCCCCCCCCCEEEECCHHHHHHHHHHHHH-CCCCCCEEEEEEEECCCEEHHHHHHHHH
Q ss_conf 598899984732233------343223479709997998999999999982-7620022456543065200012333332
Q gi|254781102|r 66 QGAEAIVVSSAYSLQ------DFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 66 ~GA~~~i~~~~~~~~------~~~~~~~~~~p~i~V~d~~~aL~~la~~~~-~~~~~~vIgITGTnGKTTt~~~l~~iL~ 138 (497)
.++..+|++-..+.. ........++|++ .+..-+++.+..... ..+..++||||||||||||+.|++++|+
T Consensus 68 ~~~d~vV~SPGI~p~~p~~~~~l~~A~~~gi~i~--~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~ 145 (501)
T PRK02006 68 DGVELVALSPGLSPLEPALAALLAAARERGIPVW--GELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCE 145 (501)
T ss_pred CCCCEEEECCEECCCCCCHHHHHHHHHHCCCCEE--EHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 6899999899008888543199999998799587--68999998876302223568748999389966879999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 10232222234544332355445767531221111111011--2233333566766655543104321211123215455
Q gi|254781102|r 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 (497)
Q Consensus 139 ~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~--~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dH 216 (497)
..|.++...|++|... ++ .+....+ ...+++|+|+||++|+. +..++|+++|+|||++||
T Consensus 146 ~~g~~~~~~GNIG~p~-------------l~---~l~~~~~~~~~~d~~VlElSSfQLe~--~~~~~p~vaVilNIs~DH 207 (501)
T PRK02006 146 RAGKKVAVAGNISPAA-------------LD---KLAEAIDAAALPDVWVLELSSFQLET--THTFAPDAATVLNITQDH 207 (501)
T ss_pred HCCCCEEEECCCCCHH-------------HH---HHHHHHCCCCCCCEEEEEECHHHHCC--CCCCCCCEEEEECCCHHH
T ss_conf 7699746525646102-------------67---78764225776868999966467575--655796789990788656
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC----CCCCEE------CCCC
Q ss_conf 432110112234554210000001223211125420001222102356532222233332----200000------0145
Q gi|254781102|r 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKV------CAIH 286 (497)
Q Consensus 217 Ld~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~----~~~~~~------~~~~ 286 (497)
||||+|+|+|+++|.+||. ..+.+|+|.||+....+....... ...++|+..... +..... ....
T Consensus 208 LD~h~s~e~Y~~aK~rif~----~~~~~V~n~DD~~~~~~~~~~~~~-~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~ 282 (501)
T PRK02006 208 LDWHGSMAAYAAAKGRIFG----PATVRVLNRDDALVMAMAPPAAAA-DAPVTFGLDEPAQDGDYGLLRENGMAWLVEAE 282 (501)
T ss_pred HHHHCCHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHCCCC-CEEEEECCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 4442379999999998723----485599948888899876650566-41688505775666540256237705787303
Q ss_pred C--C--CCCCCC--------CC----CCEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4--4--432112--------22----10010-122343322211057788877520267676311123443345521000
Q gi|254781102|r 287 N--K--QQVTIS--------VE----GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 287 ~--~--~~~~i~--------~~----~~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
. . ...... .. ...++ -.++++|.||++|++||+++|..+|++++.+.++|++|+++|||||.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V 362 (501)
T PRK02006 283 DRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVI 362 (501)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEE
T ss_conf 22100000012210233344433101103552010356720699999999999985998789876631557876525899
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
... +|..+|.| -|.||+|+.+||+++ .+++|+|+| |-+|.....++ .+...+....+|+- +|+...|
T Consensus 363 ~~~-~gv~~iNDSKaTN~~at~~Al~s~----~~~iilI~G-G~~K~~d~~~L-~~~~~~~~k~vil~-----G~~~~~i 430 (501)
T PRK02006 363 ATI-DDVDYVDDSKGTNVGATVAALDGL----AQRVVLIAG-GDGKGQDFSPL-AAPVARWARAVVLI-----GRDAPAI 430 (501)
T ss_pred EEE-CCEEEECCCCCCCHHHHHHHHHHC----CCCEEEEEE-CCCCCCCHHHH-HHHHHHHCEEEEEE-----CCCHHHH
T ss_conf 996-788997378778989999999707----897499980-57777797999-99998537099998-----9899999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99998347980997898999999999658988999944688663
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
.+.+...-.......+.++||+.|.+.|++||+||+ ..|---|
T Consensus 431 ~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPacaSf 473 (501)
T PRK02006 431 RAALADTGVPLVDAATLEEAVRAAAELAQPGDAVLL-SPACASL 473 (501)
T ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 999751798079859999999999975789798998-9611030
No 13
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=383.52 Aligned_cols=308 Identities=21% Similarity=0.300 Sum_probs=228.9
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
...++||||||||||||+.|++++|+..|.++...|++|. |.. ++ +.. ..+.+++|+|+||+
T Consensus 110 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GNiG~------------p~~-~~---~~~--~~~~d~~VlE~SSf 171 (450)
T PRK02472 110 SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGNIGY------------PAS-EV---AQK--ATADDTLVTELSSF 171 (450)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC------------CCH-HH---HHC--CCCCCEEEEEECCC
T ss_conf 1597899827999731999999999974997399941676------------412-45---544--78987799990655
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65554310432121112321545543211011223455421000000122321112542000122210235653222223
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~ 272 (497)
+|+. +..++|+++|+|||++||||||+|+|+|+++|.+||... ++++.+|+|.||+....+.+.. ..++++|+.
T Consensus 172 ql~~--~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~-~~~~~~v~n~Dd~~~~~l~~~~---~~~~i~fs~ 245 (450)
T PRK02472 172 QLMG--VETFRPHIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQ-TEDDYLVLNADQEEVKELAKQT---KATVVPFST 245 (450)
T ss_pred CHHH--HCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHC---CCEEEEECC
T ss_conf 1410--022588689993688779766348999999999999559-9687799958879999999757---970898536
Q ss_pred CCCC--CCCCEECCCCCCCCCCCCCCCCE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3332--20000001454443211222100-1-012234332221105778887752026767631112344334552100
Q gi|254781102|r 273 QGKF--IHLKKVCAIHNKQQVTISVEGKD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
.... .+... + . +.+.+.. . ...++++|.||++|+++|+++|..+|++++.|.++|++|+++|||||.
T Consensus 246 ~~~~~~~~~~~-----~--~--~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~F~Gl~hRlE~ 316 (450)
T PRK02472 246 TKEVDGAYIKD-----G--A--LYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLSTFTGVKHRLQY 316 (450)
T ss_pred CCCCCCCEEEC-----C--E--EEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 75466517627-----8--7--9988845664232367755349999999999998299878999998744884337999
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
+... +|.++|+| -|.||+|+.++|++++ +++++|+| |-+|.....+ +.... +....+++- +|+.+.
T Consensus 317 v~~~-~Gv~~iNDSKaTN~~at~~Al~~~~----~~iilI~G-G~~Kg~d~~~-l~~~~-~~vk~v~~~-----G~~~~~ 383 (450)
T PRK02472 317 VGTI-NGRKFYNDSKATNILATQKALSGFN----QPVILLAG-GLDRGNEFDE-LIPYL-KNVKAMVVF-----GETAPK 383 (450)
T ss_pred EEEE-CCEEEEECCCCCCHHHHHHHHHCCC----CCEEEEEE-CCCCCCCHHH-HHHHH-HCCCEEEEE-----CCCHHH
T ss_conf 9997-4778982688889999999984589----98799991-5556888799-99997-376899996-----889999
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999998347980997898999999999658988999944
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
|.+.+......+....|+++|++.|.++|+|||+||+.-
T Consensus 384 i~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLlSP 422 (450)
T PRK02472 384 LARAANKAGITIVEADNVEDAVPKAYALSEPGDVILLSP 422 (450)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999997379718987999999999998588959899797
No 14
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=385.02 Aligned_cols=379 Identities=19% Similarity=0.241 Sum_probs=251.2
Q ss_pred HCCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCC
Q ss_conf 859889998473223--334322347970999799899999999998276200224565430652000123333321023
Q gi|254781102|r 65 AQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 65 ~~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~ 142 (497)
-.++..+|++-..+. +........++|++ .+..-++ +.....++||||||||||||+.|++++|+.+|.
T Consensus 66 ~~~~d~vV~SPGI~~~~p~~~~a~~~gi~i~--~eiel~~-------~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 136 (459)
T PRK02705 66 LDQPDLVVVSPGIPWDHPTLVELREKGIEVI--GEMELAW-------RALKHIPWVGITGTNGKTTVTHLLAHILQAAGL 136 (459)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHHHHHH-------HHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 1678889989964998999999998799721--4999999-------985049757771789727899999999998399
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 22222345443323554457675312211111110112233333566766655543104321211123215455432110
Q gi|254781102|r 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 (497)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs 222 (497)
++...|++|....... +. ........+|+|+|+||++|+. ...++|+++|||||++||||||+|
T Consensus 137 ~~~~~GNIG~p~~~~~-----------l~---~~~~~~~~d~~VlE~SSfQLe~--~~~~~p~iavitNI~~DHLD~h~s 200 (459)
T PRK02705 137 NAPMCGNIGYAACELA-----------LL---RSGKAEKPDWIVAELSSYQIES--SPELAPKIGIWTTFTPDHLERHGT 200 (459)
T ss_pred CCEEECCCCCCHHHHH-----------HH---CCCCCCCCCEEEEECCHHHHCC--CCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 8536401376204444-----------21---3467887657999757133133--667787789996688778766421
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 11223455421000000122321112542000122210235653222223333220000001454443211222100101
Q gi|254781102|r 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 (497)
Q Consensus 223 ~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 302 (497)
+|+|+++|.+||.+ .+.+|+|.||+............ .. ++................. ..+.....+..+++
T Consensus 201 ~e~Y~~aK~~i~~~----~~~~V~N~DD~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 272 (459)
T PRK02705 201 LENYFAIKASLLER----SEIRILNGDDPYLRQGRSSWPKG-YW-VSTQGKKSLLDQADFWIDQ--EGWVVERGEPLFPL 272 (459)
T ss_pred HHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHCCCC-EE-EECCCCCCCCCCCCEEECC--CCEEEECCEEEEEH
T ss_conf 77899999975065----98899938879999987643774-79-9655641121114448826--98799778056540
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf -22343322211057788877520267676311123443345521000135578602300-0378689999741211002
Q gi|254781102|r 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 (497)
Q Consensus 303 -~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~ 380 (497)
.++++|+||++|+++|++++..+|++.+.|.++|++|+++|||||.|... +|.++|+| =|.||+|..+||++++
T Consensus 273 ~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~GlpHRlE~V~~~-~gV~fiNDSKaTN~~a~~~Al~~~~--- 348 (459)
T PRK02705 273 EALKMPGAHNLQNLLLAVAAARLAGLSAEAIAKALRSFPGVPHRLERIGTI-NGIDFINDSKATNYDAAEVGLKAVP--- 348 (459)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEC-CCEEEECCCCCCCHHHHHHHHHHCC---
T ss_conf 421687676899999999999985886366788875089999853898742-8878972787889899999998289---
Q ss_pred CCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHCC
Q ss_conf 344403540266-546004689999998619899990887989898999999983-479-80997898999999999658
Q gi|254781102|r 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIEMLN 457 (497)
Q Consensus 381 ~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~-g~~-~~~~~~dr~eAi~~A~~~a~ 457 (497)
+++++|+| | +|...-.+++ +...+....+++- +|+.+.|.+.+.. +.. .+....+.++|++.|.++|+
T Consensus 349 -~~iilI~G--G~~K~~d~~~l~-~~~~~~v~~v~~~-----G~~~~~i~~~l~~~~~~~~~~~~~~l~~Av~~a~~~a~ 419 (459)
T PRK02705 349 -GPIILIAG--GEAKQGDDSAWL-KQIKAKAAAVLLF-----GEAAPELAQLLQESGYTGEIEIVETLDEAVNRAFELAK 419 (459)
T ss_pred -CCEEEEEC--CCCCCCCHHHHH-HHHHHCCEEEEEE-----CCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHH
T ss_conf -98699956--766678739999-9986406199998-----98999999999736998776985999999999999876
Q ss_pred CCCE-EEEECCCCCCCEEECCCEECCCCHHH-----HHHHHHH
Q ss_conf 9889-99944688663584497886799899-----9999844
Q gi|254781102|r 458 KQDV-LVVAGKGHETVHIVTNGEKKMSVDCD-----IIREILG 494 (497)
Q Consensus 458 ~gDv-ili~GkG~e~~~~~~~~~~~~~~d~~-----~~~~~l~ 494 (497)
+||. ++++..|---|--+.| |.+|. .|+++++
T Consensus 420 ~~~~~~VLlSPacaSfD~f~n-----yeeRG~~F~~~V~~l~~ 457 (459)
T PRK02705 420 ELQAKSVLLSPACASFDQYQN-----FEERGDHFRQLIQELLK 457 (459)
T ss_pred CCCCCEEEECCCCCCCCCCCC-----HHHHHHHHHHHHHHHHC
T ss_conf 589998996874401013279-----99999999999999861
No 15
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=385.94 Aligned_cols=356 Identities=21% Similarity=0.269 Sum_probs=231.8
Q ss_pred CCCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 59889998473223--3343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
.++..+|.+-..+. +........++|++ .+..-++..-....+ .++.++||||||||||||+.|++++|+..|.+
T Consensus 69 ~~~d~vV~SPGI~~~~p~l~~a~~~gi~i~--~eieL~~~~~~~~~~-~~~~~~IaVTGTnGKTTttsli~~iL~~~g~~ 145 (487)
T PRK03369 69 ADYALVVTSPGFPPTAPVLAAAAAAGVPIW--GDVELAWRLDAAGCY-GPPRRWLVVTGTNGKTTTTSMLHAMLRAAGRR 145 (487)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEE--EHHHHHHHHHHCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 677889989957998999999998899076--599999998744433-67665599979887278999999999858998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22223454433235544576753122111111101122333335667666555431043212111232154554321101
Q gi|254781102|r 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 (497)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~ 223 (497)
+...|++|. |. + ...+.+.+++|+|+||++|+. +..++|+++|+|||++||||||+|+
T Consensus 146 ~~~~GNiG~------------p~-------~-~~~~~~~~~~V~ElSSfql~~--~~~~~p~iaVitNI~~DHLD~h~s~ 203 (487)
T PRK03369 146 SVLCGNIGS------------PV-------L-DVLDEPAELLAVELSSFQLHW--APSLRPEAGAVLNIAEDHLDWHGTM 203 (487)
T ss_pred EEEEECCCH------------HH-------H-HHCCCCCCEEEEEECCCCCCC--CCCCCCCEEEECCCCHHHHHHCCCH
T ss_conf 599813665------------76-------6-412478858999813654344--6666854788527887787542899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCC--CCCCCCEE
Q ss_conf 1223455421000000122321112542000122210235653222223333-22000000145444321--12221001
Q gi|254781102|r 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVT--ISVEGKDF 300 (497)
Q Consensus 224 e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--i~~~~~~~ 300 (497)
|+|.++|.+||. ++.+|+|.||+....+...........++++.+.. .+... ++..+. +.......
T Consensus 204 e~Y~~aK~ri~~-----~~~~v~n~DD~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 272 (487)
T PRK03369 204 AAYAAAKARALT-----GRVAVAGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR------DGHLVDRAFADDLTLA 272 (487)
T ss_pred HHHHHHHHHHHC-----CCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEE------CCEEEEEECCCCCEEE
T ss_conf 999999755733-----98799968768899997427876799653278764421265------3689984136773672
Q ss_pred EC-CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 01-22343322211057788877520267676311123443345521000135578602300-03786899997412110
Q gi|254781102|r 301 DF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378 (497)
Q Consensus 301 ~~-~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~ 378 (497)
++ .++++|.||++|+++|++++..+|++.+.+.++|++|+++|||||.+... +|.++|+| .|+||+|+.++|++..
T Consensus 273 ~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~~aL~~F~glphR~E~v~~~-~Gv~fiNDSKaTn~~a~~~Al~s~~- 350 (487)
T PRK03369 273 PVDSIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVA-DGITYVDDSKATNPHAARASILAYP- 350 (487)
T ss_pred EHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEEECCCCCCHHHHHHHHHHCC-
T ss_conf 46645886353699899999999984999999999998579999852899999-9999982576689889999986155-
Q ss_pred CCCCCCCEEEECCCCCCCCHHHH--------------------HHHHHHHHCC-----EEEECCCCCCCCCHHHHHHHHH
Q ss_conf 02344403540266546004689--------------------9999986198-----9999088798989899999998
Q gi|254781102|r 379 ITSGRIIVVFGCGGDRDQGKRPI--------------------MGKIALDLAD-----IAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 379 ~~~~r~i~V~G~~Gdrd~~kr~~--------------------mg~~a~~~ad-----~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
++++|+| |-+|+....++ +.+...+++. .++.++|.++.+.+..+...+.
T Consensus 351 ----~iilI~G-G~~Kg~~~~~L~~~~~~~v~~v~l~G~d~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 425 (487)
T PRK03369 351 ----RVVWIAG-GLLKGASVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVT 425 (487)
T ss_pred ----CEEEECC-CCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf ----5089615-54367770778999975425999978888999999974277665213311322221001345443333
Q ss_pred HCCCC--EEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 34798--09978989999999996589889999
Q gi|254781102|r 434 HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 434 ~g~~~--~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
..... .....++++||+.|.++|+|||+||+
T Consensus 426 ~~~~~~~~~~~~~l~~AV~~A~~~a~~GdvVLL 458 (487)
T PRK03369 426 KVDDAGGTLGDAVMTAAVAAARGLARPGDTVLL 458 (487)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 210011203577999999999974899998997
No 16
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=380.92 Aligned_cols=359 Identities=20% Similarity=0.338 Sum_probs=246.7
Q ss_pred HHHHHCCCEEEEECCCCCCC--CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHH
Q ss_conf 99998598899984732233--3432234797099979989999999999827620022456543065200012333332
Q gi|254781102|r 61 PQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 61 ~~A~~~GA~~~i~~~~~~~~--~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~ 138 (497)
++.+..++..+|++-..+.. ........++|++ .+. +|+..+......++||||||||||||+.|++++|+
T Consensus 61 ~~~~~~~~d~vV~SPgI~~~~p~l~~a~~~gi~i~--~~~-----el~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~ 133 (445)
T PRK04308 61 KDALDNGFDILALSPGISERQPDIEAFKQNGGRVL--GDI-----ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCI 133 (445)
T ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHH-----HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 36501599999989953899999999997599571--599-----99999984169957999489983779999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 10232222234544332355445767531221111111011223333356676665554310432121112321545543
Q gi|254781102|r 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 (497)
Q Consensus 139 ~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd 218 (497)
.+|.++...|++|.... +. .+. ....+.+++|+|+||++|+. ...++|+++|+|||++||||
T Consensus 134 ~~g~~~~~~GNiG~p~~-------------~~--~~~-~~~~~~d~~VlElSSfql~~--~~~~~p~iavitNi~~DHLD 195 (445)
T PRK04308 134 KCGLDTVIAGNIGTPVL-------------EA--ELQ-REGKKADVWVLELSSFQLEN--TESLRPTAATVLNISEDHLD 195 (445)
T ss_pred HCCCCEEEEEECCCCCH-------------HH--HHH-HCCCCCCEEEEEEECCCCCC--CCCCCCCEEEECCCCHHHHH
T ss_conf 75996299850375211-------------11--444-32787867999960334466--55437638998589856754
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 21101122345542100000012232111254200012221023565322222333-32200000014544432112221
Q gi|254781102|r 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEG 297 (497)
Q Consensus 219 ~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~i~~~~ 297 (497)
||+|+++|+++|.+||+ .++..|+|.||++.+.+.+. ..++.+|+... .+++... +.. .+...+
T Consensus 196 ~h~s~e~Y~~aK~~if~----~~~~~vln~dd~~~~~~~~~----~~~v~~~~~~~~~d~~~~~-----~~~--~~~~~~ 260 (445)
T PRK04308 196 RYDDLLDYAHTKAKIFR----GDGVQVLNADDAFCRAMKRA----GREVKWFSLEHEADFWLER-----ETG--RLKQGN 260 (445)
T ss_pred HHCCHHHHHHHHHHHCC----CCCEEEECCCCHHHHHHHHC----CCCEEEEECCCCCCEEEEC-----CCC--EEEECC
T ss_conf 53599999999997445----79779993871999999866----9956998137656368961-----663--797468
Q ss_pred CE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHH
Q ss_conf 00-1-0122343322211057788877520267676311123443345521000135578602300-0378689999741
Q gi|254781102|r 298 KD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 (497)
Q Consensus 298 ~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~ 374 (497)
.. + ...++++|.||++|+++|+++|..+|++++.|.++|++|+++|||||.+... +|.++|+| -|.||+|..+||+
T Consensus 261 ~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v~~~-~GV~~iNDSKaTn~~at~~Al~ 339 (445)
T PRK04308 261 EDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIA 339 (445)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEEECCCCCCHHHHHHHHH
T ss_conf 114543025667654798899999999982998899999987579999862899864-8988980798888899999998
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 21100234440354026654600468999999861989999088798989899999998347980997898999999999
Q gi|254781102|r 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 (497)
Q Consensus 375 ~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~ 454 (497)
++. +++|+|+| |-+|.....++ .+...+....+++- +|+...|.+++...-.++....+.++||+.|.+
T Consensus 340 ~~~----~~i~lI~G-G~~Kg~d~~~l-~~~~~~~~~~v~~~-----G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~ 408 (445)
T PRK04308 340 GLQ----NPLFVILG-GMGKGQDFTPL-RDALAGKAKGVFLI-----GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYA 408 (445)
T ss_pred HCC----CCEEEEEC-CCCCCCCHHHH-HHHHHHHCEEEEEE-----CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf 277----97799976-76677786999-99987525699998-----979999999886379855876879999999997
Q ss_pred HCCCCCEEEEECCCCCCC
Q ss_conf 658988999944688663
Q gi|254781102|r 455 MLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 455 ~a~~gDvili~GkG~e~~ 472 (497)
.|++||+||+ ..|---|
T Consensus 409 ~a~~g~~VLl-SPa~aSf 425 (445)
T PRK04308 409 QAEAGDIVLL-SPACASF 425 (445)
T ss_pred HCCCCCEEEE-CCCCCCC
T ss_conf 4889898998-9734040
No 17
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=377.03 Aligned_cols=319 Identities=20% Similarity=0.300 Sum_probs=230.8
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
.+..++||||||||||||+.|++++|+..|.++...|++|+ | .++ ...+.+++|+|+||
T Consensus 101 ~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GNIG~------------p-~l~--------~~~~~d~~VlElSS 159 (450)
T PRK01368 101 SKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV------------P-ALQ--------AKASKDGYVLELSS 159 (450)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCH------------H-HHH--------CCCCCCEEEEEECC
T ss_conf 67997799968999748999999999975996289625563------------6-652--------52689759999356
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCCC
Q ss_conf 6655543104321211123215455432110112234554210000001223211125420001222102-356532222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVLSV 270 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~-~~~~~~~~~ 270 (497)
++|+. +..++|++||+|||++||||||+|+|+|.++|.+||.. .++++.+|+|.||++++++..... ....++++|
T Consensus 160 fQl~~--~~~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~-~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f 236 (450)
T PRK01368 160 FQLDL--VKTFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDR-MDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPF 236 (450)
T ss_pred CCHHC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 52203--63479878999468877987726878999999999965-8988889997874889999986300455169740
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23333220000001454443211222-10010122343322211057788877520267676311123443345521000
Q gi|254781102|r 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
+....... .+....+.....+... ....++..+++|.||++|++||++++..+|++.+.|.++|++|+++|||||.|
T Consensus 237 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V 314 (450)
T PRK01368 237 SVTKILEN--GISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI 314 (450)
T ss_pred CCCCCCCC--CEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE
T ss_conf 34532447--7488547335520155330045211357565899999999999980997777787642467700146899
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
... +|..+|+| .|.||+|..++|+++. ++++|.| |.+|+.+..++ .....+ ...+++. +|+.+.|
T Consensus 315 ~~~-~gv~~iNDSKaTN~~a~~~Al~~~~-----~i~lI~G-G~~K~~d~~~l-~~~~~~-v~~~~l~-----G~~~~~~ 380 (450)
T PRK01368 315 GSI-NNISFYNDSKATNAISAVQSIKALD-----NIYWLAG-GIPKEGGIEEI-KPYFSK-IKKAYFY-----GQAKEMF 380 (450)
T ss_pred EEE-CCEEEECCCCCCCHHHHHHHHHCCC-----CEEEEEE-CCCCCCCHHHH-HHHHHC-CCEEEEE-----CCCHHHH
T ss_conf 998-9999971788789999999985689-----7399994-15777887999-988743-8799998-----9789999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCE----EEEECCCCCCC
Q ss_conf 999983479809978989999999996589889----99944688663
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV----LVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDv----ili~GkG~e~~ 472 (497)
.+. ..+..+.....+.++|++.|...|.++|. ||+ ..|---|
T Consensus 381 ~~~-~~~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl-SPacaSf 426 (450)
T PRK01368 381 ANT-AKNIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL-APSCSSY 426 (450)
T ss_pred HHH-CCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCC
T ss_conf 986-058987696499999999999997557878997996-8602040
No 18
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=376.23 Aligned_cols=307 Identities=23% Similarity=0.306 Sum_probs=220.2
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 00224565430652000123333321023222223454433235544576753122111111101122333335667666
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~g 193 (497)
..++||||||||||||+.|++++|+.+|.++...|++|+ |- +.+ ......++.|+|+||++
T Consensus 113 ~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNIG~------------p~-l~l------~~~~~~~~~VlElSSfQ 173 (457)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGNIGT------------AI-LSL------EPPKAGRVYVVECSSYQ 173 (457)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCH------------HH-CCC------CCCCCCCEEEEEECCCH
T ss_conf 898899928996498999999999973998699666240------------11-123------46889966999925752
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55543104321211123215455432110112234554210000001223211125420001222102356532222233
Q gi|254781102|r 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 194 l~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
|+. +..++|+++|+|||++||||||+|+|+|+++|.+||.+ .+.+|+|.||++...+.+.......+++.++..
T Consensus 174 l~~--~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~----~~~~Vin~DD~~~~~l~~~~~~~~~~~~~~s~~ 247 (457)
T PRK01390 174 IDL--TPSLDPTVGILLNLTPDHLDRHGTMEHYAAIKERLVAG----AGTAVIGVDDAYCQAIADRLERAGKRVVRISVE 247 (457)
T ss_pred HHH--HHCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCC----CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 654--40069988999178877865508999999999998557----986999688888999999987638849997167
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCEE---EC--CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 332200000014544432112221001---01--2234332221105778887752026767631112344334552100
Q gi|254781102|r 274 GKFIHLKKVCAIHNKQQVTISVEGKDF---DF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
..... .... .+...+ ....+... ++ ..+|+|.||++|++||+++|..+|++.+.|.++|++|+++|||||.
T Consensus 248 ~~~~~--g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~ 323 (457)
T PRK01390 248 KPLAR--GIYA-DGGKLV-RATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQ 323 (457)
T ss_pred CCCCC--CEEE-ECCEEE-ECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 65668--6498-578899-8479834544314323457754269999999999998189899999999748999985279
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
+... +|.++|+| -|.||+|..+||++++ ++++|+| |-+|..+-.++ .....+ ...+++- +|+.+.
T Consensus 324 V~~~-~Gv~~iNDSKaTN~~at~~Al~s~~-----~i~lI~G-G~~K~~d~~~l-~~~~~~-v~~~~li-----G~~~~~ 389 (457)
T PRK01390 324 VGRR-GKVLFVNDSKATNADAAAPALSSFP-----NIYWIAG-GKPKAGGIESL-APFFPR-IAKAYLI-----GEAAEE 389 (457)
T ss_pred EEEC-CCCEEECCCCCCCHHHHHHHHHCCC-----CEEEEEC-CCCCCCCHHHH-HHHHHC-CCEEEEE-----CCCHHH
T ss_conf 7542-7833853776789899999997378-----8599945-04788897999-998743-3599998-----988899
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHC----CCCCEEEE
Q ss_conf 99999834798099789899999999965----89889999
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVV 464 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a----~~gDvili 464 (497)
|.+.+... .+.....+.++||+.|...| .|||+||+
T Consensus 390 ~~~~l~~~-~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLl 429 (457)
T PRK01390 390 FAATLGGA-VPYEISGTLEAAVAAAARDAAASGAPEPVVLL 429 (457)
T ss_pred HHHHHHCC-CCEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99987367-98798598999999999999851899998997
No 19
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=374.74 Aligned_cols=377 Identities=23% Similarity=0.339 Sum_probs=284.3
Q ss_pred HHHHHHC----CCEEEEEC-CCCC--CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHH
Q ss_conf 9999985----98899984-7322--333432234797099979989999999999827620022456543065200012
Q gi|254781102|r 60 IPQAIAQ----GAEAIVVS-SAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 (497)
Q Consensus 60 i~~A~~~----GA~~~i~~-~~~~--~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~ 132 (497)
-.+.++. ++..||++ .... .+++......++|++. -.++|++|-+.. + +-||||||+|||||+.|
T Consensus 54 ~~~n~~~~p~g~~~vVv~S~~Ai~~~NpEi~~A~~~~IPv~~---R~~~Lael~~~~----k-~~iaVaGtHGKTTTTam 125 (491)
T TIGR01082 54 SAENLDDLPTGAADVVVVSAAAIKEDNPEIVEAKERGIPVIR---RAEMLAELMRKR----K-ESIAVAGTHGKTTTTAM 125 (491)
T ss_pred CHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEC---HHHHHHHHHHHH----C-CEEEEECCCCCHHHHHH
T ss_conf 779820367897437998640337888889999964888133---789999998620----8-70799836872568999
Q ss_pred HHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCC--CHHHHHHHHHCCCCCCCCC
Q ss_conf 3333321023-222223454433235544576753122111111101122-33333566--7666555431043212111
Q gi|254781102|r 133 VQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEA--SSHGLDQHRLDGIKLIAGS 208 (497)
Q Consensus 133 l~~iL~~~g~-~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g-~~~~vlEv--SS~gl~~~rl~~i~~diav 208 (497)
|+++|..+|. ++..+| |.......+..+ .+ -+|+|.|+ |--+ .-.-.+.|+++|
T Consensus 126 ia~~~~~aGLdPt~~~G--G~~~~~~~Na~~-----------------g~~~~~lvaEaDESd~~---~sFl~~~P~~ai 183 (491)
T TIGR01082 126 IAVILKEAGLDPTVIVG--GEVKEAGTNARL-----------------GSSGEYLVAEADESDRS---ASFLHLQPEVAI 183 (491)
T ss_pred HHHHHHHCCCCCCEEEC--CCCCCCCCCEEE-----------------CCCCCEEEEEEEECCCC---CCHHCCCCCEEE
T ss_conf 99999844999768986--643665774357-----------------14686799998723776---401206985799
Q ss_pred CCCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCCC--CCCCCCCEEC
Q ss_conf 2321545543--211011223455421000000122321112542000122210235-6532222233--3322000000
Q gi|254781102|r 209 FTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLSVGYQ--GKFIHLKKVC 283 (497)
Q Consensus 209 iTNI~~dHLd--~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~-~~~~~~~g~~--~~~~~~~~~~ 283 (497)
+|||.+|||| |++|+|.+.++=.+... .+|..|.+|+|.|||..+++.+.+... .-.+++|+.+ ..++...++.
T Consensus 184 ~TNie~DH~D~tY~~~~E~~~~aF~~F~~-~l~~~G~~v~c~DD~~~~~l~~~~~~~r~d~~~~y~~~~~~~~~~~~~~~ 262 (491)
T TIGR01082 184 VTNIEPDHLDNTYGSSLERLKAAFEKFIH-NLPFYGLAVICADDPVLRKLVPKATESRKDVVITYGGSGEDADIRAENIQ 262 (491)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEE
T ss_conf 74777434776664578999999999998-27888799998386547877635553387047866877764147788743
Q ss_pred CCCCCCCCCCCCCCC--------EEECCCCCCCCCCCCHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHHHH
Q ss_conf 145444321122210--------0101223433222110577888775202676---------76311123443345521
Q gi|254781102|r 284 AIHNKQQVTISVEGK--------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---------ALVLEHLEKLHVVPGRF 346 (497)
Q Consensus 284 ~~~~~~~~~i~~~~~--------~~~~~l~l~G~hni~NalaAia~a~~lGi~~---------~~i~~~L~~f~~~~gR~ 346 (497)
.......|.+....+ ..++.+++||+||+.|++||+|+|..+|++. +.|+++|++|+++.+|+
T Consensus 263 ~~~~~~~f~v~~~~~~~~~~~~G~~~~~~~~pG~HNvLNAlAA~ava~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf 342 (491)
T TIGR01082 263 QSGAEFEFSVRLKGKLGEATTEGPLEFKLNLPGRHNVLNALAAIAVALELGLDFYGKVIVDFLEAIKRALANFQGVKRRF 342 (491)
T ss_pred ECCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHH
T ss_conf 22645899999704522011100279998038720067899999888872212368556415899999985068973101
Q ss_pred CCCCCCCCC-----CEEEECCCCCHHHHHHHHHHHHHCC---CCCCCEEEECCCCCCCCHH----HHHHHHHHHHCCEEE
Q ss_conf 000135578-----6023000378689999741211002---3444035402665460046----899999986198999
Q gi|254781102|r 347 EFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKR----PIMGKIALDLADIAI 414 (497)
Q Consensus 347 E~i~~~~~~-----~~viiDyahNP~s~~~aL~~l~~~~---~~r~i~V~G~~Gdrd~~kr----~~mg~~a~~~ad~vi 414 (497)
|.+...+.. ..+++||||||..++++|+++|++. .+|+++|| -+- | ++++ ..|++...++||.||
T Consensus 343 ~~~g~~~~~~n~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k~~r~v~~F-QPH-r-YsRT~~~~~~F~~~L~~haD~l~ 419 (491)
T TIGR01082 343 EILGECNGGNNNGTVLLIDDYAHHPTEIKATLAAARQVYPDKNRRIVVVF-QPH-R-YSRTKDLFDDFAKVLSDHADELI 419 (491)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-CCC-C-HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 20100278987527999965899978999999999875211795799997-498-5-67899889999999973089999
Q ss_pred ECCCCCC------CCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 9088798------989899999998347--9809978989999999996589889999446886
Q gi|254781102|r 415 VTDDNPR------SEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 415 ~t~d~~r------~e~~~~I~~~i~~g~--~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
+|+-.+- +.+-..++..+.+.. .....++|..+..+...+.+++||++|..|.|.=
T Consensus 420 ~~diY~A~E~~~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~GD~~~~~GAG~~ 483 (491)
T TIGR01082 420 LLDIYAAGEEPIAGIDGKSLARKITQKKGKEEPYFVPDLAEVVEFLAEVLQSGDLILTMGAGDV 483 (491)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 8153211367767877899999986257877761042177899999997169989999605520
No 20
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=372.43 Aligned_cols=320 Identities=20% Similarity=0.267 Sum_probs=227.3
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
.+.++||||||||||||+.|++++|+..|.++...|++|... ++. + ....+.+++|+|+||+
T Consensus 120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GNIG~p~-------------l~~---~--~~~~~~d~~V~ElSSf 181 (481)
T PRK01438 120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGNIGVPV-------------LDA---V--RGPDGYDVLAVELSSF 181 (481)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHH-------------HHH---H--CCCCCCCEEEEECCCC
T ss_conf 888789993899746099999999996699707996256777-------------764---2--2888860899980476
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCCCCCC
Q ss_conf 6555431043212111232154554321101122345542100000012232111254200012221023-565322222
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVG 271 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~-~~~~~~~~g 271 (497)
+|+. +..++|+++|+|||++||||||+|+|+|.++|.+||.+. ....|+|.||+....+.+.... ...+.++|+
T Consensus 182 qL~~--~~~~~p~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~---~~~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~ 256 (481)
T PRK01438 182 QLHW--APSVRPHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGN---TVACVYNVADPATEDLVREADVVEGARAIGFT 256 (481)
T ss_pred CCCC--CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEEEECCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 5133--445576489970687778665235989999999986278---51499705778899999860224477078873
Q ss_pred CCCC---CCCCCEECCCCCCCCCCCCC-CC-CEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3333---22000000145444321122-21-0010-12234332221105778887752026767631112344334552
Q gi|254781102|r 272 YQGK---FIHLKKVCAIHNKQQVTISV-EG-KDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 272 ~~~~---~~~~~~~~~~~~~~~~~i~~-~~-~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
.... .+........ +...+.-.. .. .... -+++++|.||++|+++|++++..+|++++.|.++|++|+++|||
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR 335 (481)
T PRK01438 257 LGTPGPSDLGIVDGILV-DRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHR 335 (481)
T ss_pred CCCCCCCCCCEECCEEE-ECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCE
T ss_conf 58887120121034553-02034302345300010664067657699999999999998299889999888634897733
Q ss_pred HCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 1000135578602300-037868999974121100234440354026654600468999999861989999088798989
Q gi|254781102|r 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 (497)
Q Consensus 346 ~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~ 424 (497)
||.+... +|..+|+| .|.||+|..++|+++. ++++|+| |-+|...-++++ +...+....+++- +|+
T Consensus 336 ~E~v~~~-~GV~fiNDSKaTN~~A~~~AL~~~~-----~i~lI~G-G~~Kg~d~~~l~-~~~~~~vk~~~l~-----G~~ 402 (481)
T PRK01438 336 IEHVADA-DGVTYVDDSKATNPHAAEASLAAYP-----SVVWIAG-GLAKGAHFDDLV-RAHAARLRGVVLI-----GAD 402 (481)
T ss_pred EEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC-----CEEEEEC-CCCCCCCHHHHH-HHHHHHCEEEEEE-----CCC
T ss_conf 7899999-9999980688789889999987249-----8899937-865788989999-9986013399997-----789
Q ss_pred HHHHHHHHHHCCCCE--EEE-----CCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 899999998347980--997-----8989999999996589889999446886
Q gi|254781102|r 425 PEKIRAEIIHGIPGF--IEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 425 ~~~I~~~i~~g~~~~--~~~-----~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
...|.+.+....+.. ..+ .+..+|++.|.+++++||+||+ ..|--
T Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLl-SPaca 454 (481)
T PRK01438 403 RALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLL-APACA 454 (481)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE-CCHHH
T ss_conf 99999999722898745773102378999999999963899898998-95000
No 21
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=374.30 Aligned_cols=316 Identities=20% Similarity=0.278 Sum_probs=227.2
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
..+.++||||||||||||+.|++++|+..|.++...|++|+ |- + ..+.. ..+.+++|+|+||
T Consensus 114 ~~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGNiG~------------p~-~---~~~~~--~~~~d~~V~E~SS 175 (458)
T PRK01710 114 YCPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGT------------PL-F---SNIEE--IKEEDKVVLELSS 175 (458)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC------------HH-H---HHHHH--CCCCCEEEEEECH
T ss_conf 37587799936898478999999999984997585166264------------46-8---88850--5788669999321
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 66555431043212111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
++|..- .++|+++|+|||++||||||+|+|+|+++|.+||.. .++++.+|+|.||+....+.... ..+++.|+
T Consensus 176 ~ql~~~---~~~P~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~-~~~~~~~i~n~Dd~~~~~~~~~~---~~~~~~f~ 248 (458)
T PRK01710 176 FQLMTM---DVSPEVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKY-QSSNDLLVLNKDNEITNGMEKEA---KGDVVKFS 248 (458)
T ss_pred HHHHHC---CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHC---CCCEEEEC
T ss_conf 555305---468878998358853650654199999999999963-88773799937869999987763---68789953
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCE-E-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3333220000001454443211222100-1-0122343322211057788877520267676311123443345521000
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD-F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i 349 (497)
........... .. ..+ ...+.. . ...++++|.||++|++||++++. +|++++.+.++|++|+++|||||.+
T Consensus 249 ~~~~~~~~~~~--~~--~~~--~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~hR~E~v 321 (458)
T PRK01710 249 RKEKLKEGAYY--KD--GKL--YIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVEHRCEFV 321 (458)
T ss_pred CCCCCCCCCEE--EC--CEE--EECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHEEE
T ss_conf 66545667367--66--889--98784011324216776544999999999998-1999999999987543534231465
Q ss_pred CCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 135578602300-0378689999741211002344403540266546004689999998619899990887989898999
Q gi|254781102|r 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 350 ~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
... +|.++|+| +|+||+|+.+||+++ .+++|+|+| |.+|+...+++ .+...+....+++. +|+...|
T Consensus 322 ~~~-~gv~~iNDSkaTn~~s~~~AL~~~----~~~iilI~G-G~~K~~d~~~l-~~~~~~~~k~vi~~-----G~~~~~i 389 (458)
T PRK01710 322 REI-NGVKYYNDSIASSPTRTLAGLNAF----EKPVILIAG-GYDKKIPFEPL-AEEGYEKIKILILM-----GDTKNKI 389 (458)
T ss_pred EEE-CCEEEEECCCCCCHHHHHHHHHCC----CCCEEEEEC-CCCCCCCHHHH-HHHHHHHCCEEEEE-----CCCHHHH
T ss_conf 787-476798157668989999999716----777299964-65667886999-99876305299997-----8877999
Q ss_pred HHHHHH-----CC-CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 999983-----47-980997898999999999658988999944688663
Q gi|254781102|r 429 RAEIIH-----GI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 429 ~~~i~~-----g~-~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
.+.+.. +. .++....+.++|++.|.+.|++||+||+ ..|---|
T Consensus 390 ~~~l~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLl-SPa~aSf 438 (458)
T PRK01710 390 KEAFKKVEEEKGIKIPIVIVNSLEEAVKVAKNIAEKGDIITL-SPACASF 438 (458)
T ss_pred HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 999987666316886523373599999999975889798998-9733110
No 22
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=370.76 Aligned_cols=312 Identities=27% Similarity=0.367 Sum_probs=231.4
Q ss_pred HHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 82762002245654306520001233333210232222234544332355445767531221111111011223333356
Q gi|254781102|r 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 (497)
Q Consensus 109 ~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlE 188 (497)
++...+.++||||||||||||+.|++++|+..|.++...|++|+ | .+++.. .....+++|+|
T Consensus 104 ~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~------------p-~l~~~~-----~~~~~d~~VlE 165 (448)
T COG0771 104 YRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT------------P-ALELLE-----QAEPADVYVLE 165 (448)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCC------------C-HHHHHC-----CCCCCCEEEEE
T ss_conf 87448999899979996288999999999855998321351671------------3-787620-----15789879999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 67666555431043212111232154554321101122345542100000012232111254200012221023565322
Q gi|254781102|r 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 (497)
Q Consensus 189 vSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~ 268 (497)
+||++|+. +..++|++++||||++||||||+|||+|+++|.+||.+... .+|+|.||+++..+...........+
T Consensus 166 lSSfQL~~--~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~---~~Vin~dd~~~~~~~~~~~~~~~~~f 240 (448)
T COG0771 166 LSSFQLET--TSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE---VAVINADDAYLKTLADEATKARVIWF 240 (448)
T ss_pred CCCCCCCC--CCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC---EEEEECCCHHHHHHHHHCCCCEEEEE
T ss_conf 24555165--76678557999448877865606999999999999838962---79983772777654430366326889
Q ss_pred CCCCCCC-CCCCCEECCCCCCCCCCCCCCCCEE--ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2223333-2200000014544432112221001--012234332221105778887752026767631112344334552
Q gi|254781102|r 269 SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 269 ~~g~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
+++..-. ..++..... . ..+... .-.++++|.||++|++||++++...|++.+.+.++|++|+++|||
T Consensus 241 s~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR 311 (448)
T COG0771 241 SFGEPLADGDYIYDGKL------V---FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHR 311 (448)
T ss_pred ECCCCCCCCCEEECCHH------C---CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 74664556633434011------0---35300033421587545249989999999998399989999999738999862
Q ss_pred HCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 1000135578602300-037868999974121100234440354026654600468999999861989999088798989
Q gi|254781102|r 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 (497)
Q Consensus 346 ~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~ 424 (497)
||.+... +|..+|.| -|.||++..++|.++. +++++|.| |-+|..+.- .+.+.+.+..-.+++ .+++
T Consensus 312 ~e~v~~~-~gv~f~NDSKATN~~At~~AL~~~~----~~v~lI~G-G~~Kg~df~-~L~~~~~~~~~~~~~-----~G~~ 379 (448)
T COG0771 312 LEFVGEK-DGVLFINDSKATNVDATLAALSGFD----GPVILIAG-GDDKGADFS-PLAEILAKVIKKLVL-----IGED 379 (448)
T ss_pred EEEEEEC-CCEEEECCCCCCCHHHHHHHHHCCC----CCEEEEEC-CCCCCCCHH-HHHHHHHHCCEEEEE-----ECCC
T ss_conf 2798861-9889960787888889999997189----97799977-778888816-889977415559999-----4788
Q ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8999999983479809978989999999996589889999
Q gi|254781102|r 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 425 ~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili 464 (497)
...|.+.+..-........+..+|++.|.+.+++||+||+
T Consensus 380 ~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a~~gd~VLL 419 (448)
T COG0771 380 AEKIAAALKEAGPSLVICETLEEAVQLARELAQPGDVVLL 419 (448)
T ss_pred HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999875278536147699999999987258986997
No 23
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=371.09 Aligned_cols=340 Identities=22% Similarity=0.309 Sum_probs=234.8
Q ss_pred CCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCC
Q ss_conf 9889998473223--33432234797099979989999999999827620022456543065200012333332102322
Q gi|254781102|r 67 GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 67 GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~ 144 (497)
.+..+|++-..+. +........++|++ .+.. |+.+ ....++||||||||||||+.|++++|+..|.++
T Consensus 68 ~~d~vV~SPGI~~~~p~~~~a~~~~i~i~--~eie-----l~~~---~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~ 137 (438)
T PRK04663 68 EADLVVTNPGIALATPEIQPVLAKGIPVV--GDIE-----LFAW---AVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEE--CHHH-----HHHH---HCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999989976998989999998699370--3889-----9976---458978999489982899999999998289970
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22234544332355445767531221111111011223333356676665554310432121112321545543211011
Q gi|254781102|r 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 (497)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e 224 (497)
...|++|. | .++ +.+...+++|+|+||++|+. ...++|+++|+|||++||||||+|++
T Consensus 138 ~~gGNiG~------------p-~~~-------~~~~~~d~~VlElSSfQLe~--~~~~~p~iavilNIs~DHLD~h~s~e 195 (438)
T PRK04663 138 AVGGNIGV------------P-ALD-------LLEQDAELYVLELSSFQLET--TSSLKLKAAAFLNLSEDHMDRYQGMA 195 (438)
T ss_pred EEEEECCC------------H-HHH-------HHHCCCCEEEEECCCCCHHH--HCCCCCCCHHHHCCCHHHHHHHCCHH
T ss_conf 68721571------------6-887-------53046978998445101434--03568633344068876877736999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEE-CC
Q ss_conf 22345542100000012232111254200012221023565322222333322000000145444321122210010-12
Q gi|254781102|r 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FL 303 (497)
Q Consensus 225 ~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 303 (497)
+|.++|.+||.+ ...+|+|.||+.. ... ....++++|+.+..++.... ..+..+........+. ..
T Consensus 196 ~Y~~aK~rIf~~----~~~~Ivn~dd~~~---~~~--~~~~~~~~fg~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 262 (438)
T PRK04663 196 DYRQAKLRIFDH----AELAVVNRDDKQT---YPD--TASLQLVTFGFDQQEYGLIE----HQGREWLADNGQPVLASNE 262 (438)
T ss_pred HHHHHHHHHHCC----CCEEEECCCHHHH---HHH--HCCCCEEEEECCCCCCCEEE----ECCEEEEEECCEEEEEHHH
T ss_conf 999999998536----9789986535988---877--60785799604620165597----2786999858877663143
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 2343322211057788877520267676311123443345521000135578602300-037868999974121100234
Q gi|254781102|r 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382 (497)
Q Consensus 304 l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~ 382 (497)
++++|.||++|+++|++++..+|++.+.|.++|++|+++|||||.|... +|.++|+| -|.||+|..+||++++ .++
T Consensus 263 l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpHRlE~v~~~-~gv~~iNDSKaTN~~a~~~Al~~~~--~~~ 339 (438)
T PRK04663 263 LKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTHRCQVVADN-RGIKWVNDSKATNVASTLAALSGLN--LEG 339 (438)
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC--CCC
T ss_conf 0566455687799999999983999789865653358988752899998-9999974787788789999998367--778
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEE
Q ss_conf 44035402665460046899999986198999908879898989999999834798099789899999999965898899
Q gi|254781102|r 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 (497)
Q Consensus 383 r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvi 462 (497)
++++|+| |-+|+.+..+ +.+...+....+++- +|+.+.+.. -.+......+..+|++.|.+.|++||+|
T Consensus 340 ~i~lI~G-G~~Kg~d~~~-l~~~~~~~~~~~~~~-----G~~~~~~~~----~~~~~~~~~~l~~Av~~a~~~a~~gd~v 408 (438)
T PRK04663 340 KLYLLVG-GVGKGADFSE-LKPVLATLNLQLCCF-----GEDGDQFMP----LHPSARRFETMEDAIESISPQLKSGDMV 408 (438)
T ss_pred CEEEEEC-CCCCCCCHHH-HHHHHHHCCEEEEEE-----CCCHHHHHH----HCCCCEECCCHHHHHHHHHHHCCCCCEE
T ss_conf 4799965-7666668799-999985237699998-----888999974----3245344067999999999867799989
Q ss_pred EEE
Q ss_conf 994
Q gi|254781102|r 463 VVA 465 (497)
Q Consensus 463 li~ 465 (497)
|+.
T Consensus 409 LlS 411 (438)
T PRK04663 409 MLS 411 (438)
T ss_pred EEC
T ss_conf 989
No 24
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=371.56 Aligned_cols=359 Identities=23% Similarity=0.338 Sum_probs=256.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC-CCCEEEEEE
Q ss_conf 8899803887676888999998598899984732233343223479709997998999999999982762-002245654
Q gi|254781102|r 44 WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTG 122 (497)
Q Consensus 44 ~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~-~~~vIgITG 122 (497)
|+=|.=||=..+ |.-+.+|.++|+ | ++-|..-|+ .+...+ +.++|||||
T Consensus 68 d~vv~SPGi~~~-hp~~~~a~~~g~----------------------~--v~gdi~L~~-----~~~~~~~~~~~~aITG 117 (476)
T TIGR01087 68 DLVVLSPGIPPD-HPLVQAAAKRGI----------------------P--VVGDIELAL-----RLVDFPEPAKVVAITG 117 (476)
T ss_pred EEEEECCCCCCC-CHHHHHHHHCCC----------------------E--EEEHHHHHH-----HHCCCCCCCCEEEEEC
T ss_conf 079978989867-779999996698----------------------0--898679999-----7415789873799972
Q ss_pred EECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 30652000123333321023222223454433235544576753122111111101122333335667666555431043
Q gi|254781102|r 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 (497)
Q Consensus 123 TnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i 202 (497)
|||||||+.|++++|+..|.++...||+|+ | +++ .+..++.+++|+|+|||+|+. +..+
T Consensus 118 TnGKtTTT~L~~~~L~~~G~~a~~gGNIG~------------p-~L~------~~~~~~~~~~VlElSSFQL~~--~~~~ 176 (476)
T TIGR01087 118 TNGKTTTTSLLYHLLKAAGLKAVLGGNIGT------------P-ALE------VLDQEGAELYVLELSSFQLET--TESL 176 (476)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------H-HHH------HHCCCCCCEEEEEECCHHHCC--CCCC
T ss_conf 686079999999999846997786257881------------2-555------310588966999700032045--7555
Q ss_pred C--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC--CCCC
Q ss_conf 2--12111232154554321101122345542100000012232111254200012221023565322222333--3220
Q gi|254781102|r 203 K--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIH 278 (497)
Q Consensus 203 ~--~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~--~~~~ 278 (497)
+ |.+++||||++||||||+|||+|.++|.+||.. ..++..+|+|.|+.+...+.........+++.|..+. ....
T Consensus 177 ~p~p~i~~~lNi~~DHLD~h~~~~~Y~~aK~~i~~~-~~~~d~~v~n~d~~~~~~~~~~~~~~~~~~~~~~~~~CP~~~~ 255 (476)
T TIGR01087 177 RPAPEIALILNISEDHLDWHGSFEDYVAAKLKIFAR-QTEGDVAVLNADQAYDPRFTRLEKKSKAQVVLFSVEKCPAEAE 255 (476)
T ss_pred CCCCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCHHHHCCCCCCCEEEEECCCCCCHHHH
T ss_conf 665124687066356301107988999998898525-9987679881200255046521246753078740445808899
Q ss_pred CCEECCCCCCCCCCCCC------CCCEE--ECCCCCCCCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 00000145444321122------21001--0122343322211057788877520267----676311123443345521
Q gi|254781102|r 279 LKKVCAIHNKQQVTISV------EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRF 346 (497)
Q Consensus 279 ~~~~~~~~~~~~~~i~~------~~~~~--~~~l~l~G~hni~NalaAia~a~~lGi~----~~~i~~~L~~f~~~~gR~ 346 (497)
.......++..+.-.. ....+ ....+|+|.||++|+++|++++..+|++ .+.+.+.|++|++++|||
T Consensus 256 -~~l~~~~~~~~l~~~~e~~~~C~~~~~~~~~~~~l~g~h~~~n~laa~ala~~~g~~~~~~~~~~~~~l~~F~~~~HRl 334 (476)
T TIGR01087 256 -QGLEIRDGKEYLKPNDENDFACDDLTILPCEELKLLGLHNAENILAAIALAKSLGLNSDEELEAILEALRSFKGLPHRL 334 (476)
T ss_pred -HHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf -7641238852633678763000011243321567678889999999999999828897601689999998457987626
Q ss_pred CCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCH
Q ss_conf 0001355786023000-378689999741211002344403540266546004689999998619899990887989898
Q gi|254781102|r 347 EFVGTNSRGGRIYVDY-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 (497)
Q Consensus 347 E~i~~~~~~~~viiDy-ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~ 425 (497)
|.|.. .+|...|.|- |.||+|..+||.+++ .++|+++|+| |-||+.+-.++ ..++.+..-.+++ .|++-
T Consensus 335 E~~~~-~~G~~f~NDSKATn~~At~~AL~~~~--~~~~~~LI~G-G~~KG~df~~L-~~~~~~~~~~~~~-----~G~~~ 404 (476)
T TIGR01087 335 EYVGQ-KNGVHFINDSKATNVHATLAALSALK--NPKRVILIVG-GDDKGADFSPL-APALKKKVKAVLA-----IGEDA 404 (476)
T ss_pred EEEEE-CCCEEEEECCCCCCHHHHHHHHHHCC--CCCEEEEEEE-CCCCCCCHHHH-HHHHCCCEEEEEE-----ECCCH
T ss_conf 88777-28547982562121899999998479--9971899960-34689984899-9984365079998-----53547
Q ss_pred HHHHHHHHHCCCCE-E----EECCHHHHHHHHHHHCCCC--CEEEEE
Q ss_conf 99999998347980-9----9789899999999965898--899994
Q gi|254781102|r 426 EKIRAEIIHGIPGF-I----EKGNRIEAIRTAIEMLNKQ--DVLVVA 465 (497)
Q Consensus 426 ~~I~~~i~~g~~~~-~----~~~dr~eAi~~A~~~a~~g--Dvili~ 465 (497)
++|+..+.+-.... . ...++.+||+.|.+.+++| |+||+.
T Consensus 405 ~~~~~~l~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~g~~d~vLLS 451 (476)
T TIGR01087 405 AKIAKLLKEIGLVVKYGEETLVESLEEAVQAAREVAKEGNADVVLLS 451 (476)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89999863427643546530577899999999997127997679888
No 25
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=368.57 Aligned_cols=306 Identities=25% Similarity=0.344 Sum_probs=221.4
Q ss_pred CCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 62002245654306520001233333210232222234544332355445767531221111111011223333356676
Q gi|254781102|r 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 (497)
Q Consensus 112 ~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS 191 (497)
....++||||||||||||+.|++++|+..|+++...|++|. | .++ +.+.+.+++|+|+||
T Consensus 102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGNiG~------------p-~~~-------~~~~~~d~~VlElSS 161 (438)
T PRK03806 102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL------------P-ALM-------LLDQDCELYVLELSS 161 (438)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC------------C-HHH-------HHCCCCCEEEEECCC
T ss_conf 27998899948998489999999999865997567715775------------2-777-------513767579983245
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 665554310432121112321545543211-0112234554210000001223211125420001222102356532222
Q gi|254781102|r 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 (497)
Q Consensus 192 ~gl~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~ 270 (497)
++|+. ...++|+++|+|||++||||+|+ ++|+|+++|.+||.+ .+.+|+|.||+....+. ....+.++|
T Consensus 162 fQLe~--~~~~~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~----~~~~v~n~dD~~~~~~~----~~~~~~i~f 231 (438)
T PRK03806 162 FQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN----AKVCVVNADDALTMPVR----GADERCVSF 231 (438)
T ss_pred CCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEECCCCHHHHHHH----HCCCCEEEE
T ss_conf 33002--354576378863588878877654599999999988627----96899947518779864----035655898
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCE-EE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23333220000001454443211222100-10-12234332221105778887752026767631112344334552100
Q gi|254781102|r 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD-FD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
+.+..+++... ..+.. .+...+.. .. -+++++|+||++|+++|++++..+|++.+.|.++|.+|+++|||||.
T Consensus 232 g~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~ 306 (438)
T PRK03806 232 GVNMGDYHLNR----QQGET-WLRVKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQL 306 (438)
T ss_pred ECCCCCEEEEE----CCCCE-EEEECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 23566436760----57736-89737803540121266672049889999999998399989986552047999973389
Q ss_pred CCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH
Q ss_conf 0135578602300-037868999974121100234440354026654600468999999861989999088798989899
Q gi|254781102|r 349 VGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 (497)
Q Consensus 349 i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~ 427 (497)
+... +|.++|+| .|.||+|+.+||++++ ..+++|+|+| |-+|..+..++ .+...+..-.+++- +|+.+.
T Consensus 307 v~~~-~gv~fiNDSKaTN~~a~~~Al~s~~--~~~~i~lI~G-G~~K~~d~~~l-~~~~~~~~~~~~~~-----G~~~~~ 376 (438)
T PRK03806 307 VLEH-NGVRWINDSKATNVGSTEAALNGLH--VDGTLHLLLG-GDGKSADFSPL-ARYLNGDNIRLYCF-----GRDGAQ 376 (438)
T ss_pred EEEE-CCEEEEECCCCCCHHHHHHHHHHCC--CCCCEEEEEC-CCCCCCCHHHH-HHHHHCCCEEEEEE-----CCCHHH
T ss_conf 9997-9999998972158999999998262--0397799954-77555787999-99861265699997-----778899
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999834798099789899999999965898899994
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~ 465 (497)
+.+ +.... .....+.++|++.|.+.+++||+||+.
T Consensus 377 ~~~-~~~~~--~~~~~~l~~Av~~a~~~a~~gd~VLlS 411 (438)
T PRK03806 377 LAA-LRPEV--AQLTETMEQAMRLLAPRVQPGDMVLLS 411 (438)
T ss_pred HHH-HCCCC--CHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 996-41220--415400999999999866899989989
No 26
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=366.41 Aligned_cols=309 Identities=19% Similarity=0.226 Sum_probs=216.1
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
+..++||||||||||||+.|++++|+..|.++...|++|+.- +++ +. .....+++|+|+||+
T Consensus 113 ~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~P~-------------~~~---~~--~~~~~d~~VlElSSf 174 (468)
T PRK04690 113 SVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGQPL-------------LEV---LA--PQPAPAYWAIELSSY 174 (468)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHH-------------HHH---HC--CCCCCCEEEEEECCC
T ss_conf 678789996998589999999999985799828986776446-------------765---32--478885799994320
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65554310432121112321545543211011223455421000000122321112542000122210235653222223
Q gi|254781102|r 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 (497)
Q Consensus 193 gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~ 272 (497)
+|+.-+....+|+++|+|||++||||||+|+|+|+++|.+||.+.. ...+|+|.||+....+. -...++..|+.
T Consensus 175 QLe~~~~~~~~p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~--~~~~vin~~D~~~~~~~----~~~~~v~~~~~ 248 (468)
T PRK04690 175 QTGDVGRSGARPELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGR--PRIALLNAADPRLAALQ----LPDSEVRWFNH 248 (468)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCC--CCEEEEECCCHHHHHHH----CCCCCEEEECC
T ss_conf 5765453147877875304888787460899999999999996579--97799978888999752----57784699517
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 33322000000145444321122210010-12234332221105778887752026767631112344334552100013
Q gi|254781102|r 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 (497)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~ 351 (497)
... ..... . .........+. ..++++|.||++|+++|++++..+|++.+.|.++|.+|+++|||||.+..
T Consensus 249 ~~~-~~~~~-------~-~~~~~~~~~~~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF~glpHRlE~v~~ 319 (468)
T PRK04690 249 PDG-WHVRG-------D-VVYRGEQAIFDTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASFRPLPNRLQELGS 319 (468)
T ss_pred CCC-EEECC-------C-EEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 775-37606-------6-78835620111123677770048769999999998389889999987426799975279999
Q ss_pred CCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC-EEEECCCCCCCCCHHHHH
Q ss_conf 5578602300-03786899997412110023444035402665460046899999986198-999908879898989999
Q gi|254781102|r 352 NSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIR 429 (497)
Q Consensus 352 ~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad-~vi~t~d~~r~e~~~~I~ 429 (497)
. +|..+|.| =|.||+|..++|+++ ..+++++|+| |-+|+.+-.++ .+...+... .+|+- +|+-+.|.
T Consensus 320 ~-~gv~fiNDSKATN~~a~~~AL~~f---~~~~iilI~G-G~~Kg~d~~~l-~~~~~~~~~~~vi~~-----G~~~~~i~ 388 (468)
T PRK04690 320 V-DGITYVNDSISTTPHASLAALDCF---AGRRVALLVG-GHDRGLDWTDF-AAHMAQQAPLEIVTM-----GANGPRIH 388 (468)
T ss_pred E-CCEEEECCCCCCCHHHHHHHHHHC---CCCCEEEEEC-CCCCCCCHHHH-HHHHHHCCCEEEEEE-----CCCHHHHH
T ss_conf 8-999997378778989999999727---6685799973-67667787999-999863376899997-----47889999
Q ss_pred HHHHHCCC----CEEEECCHHHHHHHHHH-HCCCCCEEEEE
Q ss_conf 99983479----80997898999999999-65898899994
Q gi|254781102|r 430 AEIIHGIP----GFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465 (497)
Q Consensus 430 ~~i~~g~~----~~~~~~dr~eAi~~A~~-~a~~gDvili~ 465 (497)
+.+..-.. ......|..+|++.|.+ ++++||+||+.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLS 429 (468)
T PRK04690 389 ALLAPLADAGRFGLHAADDLPHAMALARTALGAQGGVVLLS 429 (468)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99752344563102540679999999999605899989979
No 27
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=366.98 Aligned_cols=356 Identities=20% Similarity=0.236 Sum_probs=236.0
Q ss_pred CCCEEEEECCCCCCC--CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 598899984732233--343223479709997998999999999982762002245654306520001233333210232
Q gi|254781102|r 66 QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 66 ~GA~~~i~~~~~~~~--~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
.++..+|++-..+.. ........++|++ .+..-++. +.+.-.-.++.++||||||||||||+.|++++|+++|.+
T Consensus 75 ~~~d~vV~SPGI~~~~p~l~~a~~~gi~vi--seiel~~~-~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~ 151 (476)
T PRK00141 75 DSYSIVVTSPGWRPDSPLLVDAQSAGLEVI--GDVELAWR-LDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQAGGFA 151 (476)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEE--EHHHHHHH-HHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 689999989978997999999998799577--19999998-611643367776388968996798999999999837997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22223454433235544576753122111111101122333335667666555431043212111232154554321101
Q gi|254781102|r 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 (497)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~ 223 (497)
+...|++|.... + .+ ......+++|+|+||++|+. +..++|+++|+|||++||||||+|+
T Consensus 152 ~~~~GNIG~p~~-------------~---~l--~~~~~~d~~VlElSSfQL~~--~~~~~p~iaVilNIs~DHLD~h~s~ 211 (476)
T PRK00141 152 AVAVGNIGIPVS-------------A---AL--VAQNRIDVLVAELSSFQLHW--APTFTPDAGVVLNLAEDHIDWHGSM 211 (476)
T ss_pred CEEEEECCCHHH-------------H---HH--HCCCCCCEEEEECCCCHHCC--CCCCCCCEEEEECCCHHHHHHHCCH
T ss_conf 289950672466-------------6---65--25787758999778201200--2236865898726887898662699
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--EEE
Q ss_conf 122345542100000012232111254200012221023565322222333322000000145444321122210--010
Q gi|254781102|r 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFD 301 (497)
Q Consensus 224 e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ 301 (497)
|+|+++|.+||.. ...|+|.||++...+........ +++|+.......... ..++..+....... ...
T Consensus 212 e~Y~~aK~kI~~~-----~~~vi~~Dd~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ 281 (476)
T PRK00141 212 RDYALDKARVLTA-----PVAVIGADDPYVVELTREADLSG--LIGFTLGEPAEGQVG---VRAGELVDNAFGDNVVLAS 281 (476)
T ss_pred HHHHHHHHHHHCC-----CCEEEECCCHHHHHHHHHCCCCC--EEEECCCCCCCCCEE---EECCEEEEEECCCCCEECC
T ss_conf 9999999987348-----82499778789999887447886--798527875535244---7768899851577503212
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHC
Q ss_conf -122343322211057788877520267676311123443345521000135578602300-037868999974121100
Q gi|254781102|r 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 (497)
Q Consensus 302 -~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~ 379 (497)
-.++++|.||++|+++|++++..+|++.+.+.++|++|+++|||||.+... +|.++|+| =|.||+|..+||++.+
T Consensus 282 ~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~v~~~-~gV~fiNDSKaTN~~at~~AL~~~~-- 358 (476)
T PRK00141 282 ADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQVVAEH-DGVHFIDNSKATNPHAADSALAGHE-- 358 (476)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEE-CCEEEECCCCCCCHHHHHHHHHHCC--
T ss_conf 4323776533599999999999984999999999998568988612799998-9999981798999899999997288--
Q ss_pred CCCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCC--EEEE------CCHHHHHH
Q ss_conf 2344403540266-5460046899999986198999908879898989999999834798--0997------89899999
Q gi|254781102|r 380 TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK------GNRIEAIR 450 (497)
Q Consensus 380 ~~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~--~~~~------~dr~eAi~ 450 (497)
++++|.| | +|..+..++.. ...+....+++- +|+...|.+++....+. ...+ ...++|++
T Consensus 359 ---~iilI~G--G~~Kg~d~~~l~~-~~~~~vk~v~l~-----G~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~av~ 427 (476)
T PRK00141 359 ---SVIWVAG--GQLKGADIDELIA-THGGRIKAALVL-----GADRAEIVAAVKEHAPDAPVTVTDKTDPEEAMREAVA 427 (476)
T ss_pred ---CCEEEEC--CCCCCCCHHHHHH-HHHHHCEEEEEE-----CCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
T ss_conf ---7399944--7657778799999-986331099997-----6898999999985478882688615457889999999
Q ss_pred HHHHHCCCCCEEEEECCCC
Q ss_conf 9999658988999944688
Q gi|254781102|r 451 TAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 451 ~A~~~a~~gDvili~GkG~ 469 (497)
.|.+.|++||+||+ ..|-
T Consensus 428 ~a~~~a~~gd~VLL-SPac 445 (476)
T PRK00141 428 AAFSLAEPGDSVVL-APAA 445 (476)
T ss_pred HHHHHCCCCCEEEE-CCHH
T ss_conf 99973889898998-9454
No 28
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=100.00 E-value=0 Score=369.30 Aligned_cols=435 Identities=23% Similarity=0.327 Sum_probs=291.4
Q ss_pred HHHHHHH-HHCCCCCCCC--CCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 6789887-3203355655--574300245302314689889980388767688899999859889998473223334322
Q gi|254781102|r 9 KDFPELI-NQLSIFPMQW--RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 (497)
Q Consensus 9 ~~~~~~~-~~~~~~~~~~--~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~ 85 (497)
.++.||+ ..++..|..+ .|...+.|.+|+=.. ..+.-+|-+ +++...+|..++|=+...-.-...+.
T Consensus 333 hTi~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~~----~~L~kqG~~------ldsVp~kG~~V~Lr~~ANLSTGG~A~ 402 (876)
T TIGR02068 333 HTIEELIGEQINKDPLRGDGHDKPLTKIRLDSVAK----LVLAKQGLT------LDSVPAKGRIVYLRATANLSTGGVAI 402 (876)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHH----HHHHHCCCC------CCCHHHCCCEEEEECCCCCCCCCEEE
T ss_conf 00766405764677788886677888343307999----999854975------11545409788863247744587316
Q ss_pred --------------------CCCCCCE--EEECCHHHHH-------------------------------HHHHHHHHCC
Q ss_conf --------------------3479709--9979989999-------------------------------9999998276
Q gi|254781102|r 86 --------------------IRSNTPI--LVVDNTRKFL-------------------------------SLFASRLYGK 112 (497)
Q Consensus 86 --------------------~~~~~p~--i~V~d~~~aL-------------------------------~~la~~~~~~ 112 (497)
+--++.= ++.+|..+=| ..+-..+|..
T Consensus 403 DrTDeiHP~~~~~a~~aAk~iGLDiaG~D~v~~di~~PL~~~~G~iVEVNAaPGlrMH~~PS~G~pR~Va~Ai~d~LFP~ 482 (876)
T TIGR02068 403 DRTDEIHPENIAIAVRAAKIIGLDIAGVDVVTEDISKPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAKAIVDMLFPE 482 (876)
T ss_pred ECCCCCCHHHHHHHHHHHHEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 22575384589999875200000121222003100037454597299985676634446777746987102687522888
Q ss_pred C-CC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2-00--22456543065200012333332102322222345443323--5544576753122111111101122333335
Q gi|254781102|r 113 H-PE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 (497)
Q Consensus 113 ~-~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~--~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vl 187 (497)
- +. +|++||||||||||++|++|||+..|+.+|+..|.|.+-+. ......|-|.|- .. .+.++.+|.+||
T Consensus 483 ~~~grIPiV~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~~GDntGP~SA--r~---~L~d~~VdaAVL 557 (876)
T TIGR02068 483 EDDGRIPIVAVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKKLVEKGDNTGPKSA--RR---ILADPTVDAAVL 557 (876)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCHHHH--HH---CCCCCCEEEEEE
T ss_conf 7898344888726898355788999999856982764203767755766624789871573--01---227888018998
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 66766655543104321211123215-4554321--10112234554210000001223211125420001222102356
Q gi|254781102|r 188 EASSHGLDQHRLDGIKLIAGSFTNLG-RDHIDYH--QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 (497)
Q Consensus 188 EvSS~gl~~~rl~~i~~diaviTNI~-~dHLd~~--gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~ 264 (497)
|.-+-|+=...|..=.++++|+|||+ .|||..+ .|+|..+..|.-+.+ ...++|.+|||+|||....|.+.+ +
T Consensus 558 EtarGGiLR~GLafD~c~VGvVtNi~~~DHLG~~dInt~e~La~Vk~vv~e-~V~pDG~AVLNA~DP~va~mA~~~---~ 633 (876)
T TIGR02068 558 ETARGGILREGLAFDRCDVGVVTNIADGDHLGLGDINTIEDLADVKRVVVE-VVKPDGYAVLNADDPMVAAMAEKC---K 633 (876)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEE-EECCCCCEEECCCCCHHHHHHHHC---C
T ss_conf 627872206650103214168983377663578860047888751012678-885898278647885579998428---9
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCC-------CCCCCCCCCCEE------ECCCCCCCC--CCCCHHHHHHHHHHHCCCCH
Q ss_conf 532222233332200000014544-------432112221001------012234332--22110577888775202676
Q gi|254781102|r 265 CRVLSVGYQGKFIHLKKVCAIHNK-------QQVTISVEGKDF------DFLFPLPGE--FQVYNALVAAGLCIAIGIDS 329 (497)
Q Consensus 265 ~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~------~~~l~l~G~--hni~NalaAia~a~~lGi~~ 329 (497)
.++..|+.+.+.--+.. +...++ ..+.+.-.+.+. ++.+-+-|+ ||++|+|||+++++.+++|+
T Consensus 634 G~i~YF~~~~~~~~~~~-H~~~G~~avy~~~G~ivia~G~~~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~i 712 (876)
T TIGR02068 634 GKIAYFSMDPNNPTVAK-HIAKGGRAVYYENGYIVIAKGGAEVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDI 712 (876)
T ss_pred CCEEEEECCCCHHHHHH-HHHCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 61898621862589999-98559899998678799974783226789972886757715788889999999985348989
Q ss_pred HHHHHHHHHHHH----HHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCCHHHHHHH
Q ss_conf 763111234433----45521000135578602300037868999974121100234440354026654-6004689999
Q gi|254781102|r 330 ALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR-DQGKRPIMGK 404 (497)
Q Consensus 330 ~~i~~~L~~f~~----~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdr-d~~kr~~mg~ 404 (497)
|.|+++|+.|.. .||||++|.. ++..+++||+|||+|+++.+.++++++.+|++.|+|.+||| |.+-+ ..|+
T Consensus 713 e~Ir~G~~tF~~d~~~~PGrfnLFn~--~~~~~lvDY~HNp~~~~av~~a~~~~~A~rr~gV~ggpGDR~De~l~-~~G~ 789 (876)
T TIGR02068 713 ELIRAGIRTFKADAAQAPGRFNLFNL--GGAHVLVDYGHNPAAIEAVVEAIRNLPARRRIGVIGGPGDRRDEDLV-KLGE 789 (876)
T ss_pred HHHHHHHHHCCCHHHCCCCEEEEEEC--CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHHH
T ss_conf 99998987330101068950322225--88289996577978999999999617878478998078778658899-9999
Q ss_pred HHHHHCCEEEECCCC-CCCCCHHHHHHH-HHHCCC-------CEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 998619899990887-989898999999-983479-------80997898999999999658988999944
Q gi|254781102|r 405 IALDLADIAIVTDDN-PRSEDPEKIRAE-IIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 405 ~a~~~ad~vi~t~d~-~r~e~~~~I~~~-i~~g~~-------~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
+++..+|.|++-.|+ .|+..|+--+.+ +.+|+. ++..+.|.-+||+.++..+.+||.+||+-
T Consensus 790 ~~g~~FD~i~~keD~~~rGkR~~G~a~~Ll~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~~~GdL~vi~~ 860 (876)
T TIGR02068 790 ILGGAFDQIILKEDDDLRGKRARGEAAALLRQGLIQAAMRKAAIEEILDETEAIKAALDSLEAGDLVVILP 860 (876)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 97540687999627453578887358999996353057765679999889999999984214688699970
No 29
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=354.52 Aligned_cols=359 Identities=25% Similarity=0.359 Sum_probs=267.1
Q ss_pred CCEEEEECCCCCC--CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCC
Q ss_conf 9889998473223--33432234797099979989999999999827620022456543065200012333332102322
Q gi|254781102|r 67 GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 67 GA~~~i~~~~~~~--~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~ 144 (497)
++..+|++..+.. ++.......++|++. --+.|+++-+ . ...|||+||+|||||+.|++++|...|...
T Consensus 66 ~~~~VV~s~Ai~~~NpEi~~A~e~~ipi~~---r~e~L~elm~---~---~~~iaVaGTHGKTTTTsmla~vl~~~gldP 136 (459)
T COG0773 66 DADVVVVSNAIKEDNPEIVAALERGIPVIS---RAEMLAELMR---F---RTSIAVAGTHGKTTTTSMLAWVLEAAGLDP 136 (459)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHCCCCEEC---HHHHHHHHHH---C---CEEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 996599965657999899999985998162---8999999970---7---716999478875408999999998679998
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf -222345443323554457675312211111110112233333566----766655543104321211123215455432
Q gi|254781102|r 145 -FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 (497)
Q Consensus 145 -~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEv----SS~gl~~~rl~~i~~diaviTNI~~dHLd~ 219 (497)
..+| |.+.+...+..+. +-+|.|.|+ ||+ -..+|+++|+|||.+||+|+
T Consensus 137 tf~iG--G~~~~~g~na~~g-----------------~~~~fV~EADEsD~sF-------l~~~P~~aIvTNid~DH~D~ 190 (459)
T COG0773 137 TFLIG--GILKNFGTNARLG-----------------SGDYFVAEADESDSSF-------LHYNPRVAIVTNIEFDHLDY 190 (459)
T ss_pred EEEEC--CCCCCCCCCCCCC-----------------CCCEEEEEECCCCCCC-------CCCCCCEEEEECCCCCCHHH
T ss_conf 79977--7445577655458-----------------8864999951541650-------24889789980788340012
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 1101122345542100000012232111254200012221023565322222333-322000000145444321122210
Q gi|254781102|r 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK 298 (497)
Q Consensus 220 ~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~i~~~~~ 298 (497)
|++++++.++=...+. ..|..|.+|+|.|||..+++..+. +..++++||.+. ++++..++.....++.|++...++
T Consensus 191 y~~~~~i~~~F~~f~~-~vp~~G~~v~~~dd~~l~~l~~~~--~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~ 267 (459)
T COG0773 191 YGDLEAIKQAFHHFVR-NVPFYGRAVVCGDDPNLRELLSRG--CWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE 267 (459)
T ss_pred HCCHHHHHHHHHHHHH-HCCCCCEEEEECCCHHHHHHHHCC--CCCCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf 1899999999999998-388665599978888899987222--5873794247876728999768706642799998685
Q ss_pred E-EECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0-101223433222110577888775202676763111234433455210001355786023000378689999741211
Q gi|254781102|r 299 D-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 (497)
Q Consensus 299 ~-~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~ 377 (497)
. .++.++++|+||+.|++||++++..+|++.+.|+++|++|+++.+|||+... .++.++|+||||+|..++++|+++|
T Consensus 268 ~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g~-~~~~~viDDYaHHPtEI~aTL~aaR 346 (459)
T COG0773 268 ELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASFQGVKRRFELKGE-VNGVTVIDDYAHHPTEIKATLAAAR 346 (459)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEE-ECCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 567999726762268889999999998499989999999738896413688646-8878998568889799999999999
Q ss_pred HCCC--CCCCEEEECCCCCCCCH-HH---HHHHHHHHHCCEEEECCCCCCCCCH-------HHHHHHHHHCCCCEEEECC
Q ss_conf 0023--44403540266546004-68---9999998619899990887989898-------9999999834798099789
Q gi|254781102|r 378 TITS--GRIIVVFGCGGDRDQGK-RP---IMGKIALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGN 444 (497)
Q Consensus 378 ~~~~--~r~i~V~G~~Gdrd~~k-r~---~mg~~a~~~ad~vi~t~d~~r~e~~-------~~I~~~i~~g~~~~~~~~d 444 (497)
+..+ +|+++||= + +-.++ +. .+++.. +.||.|+++.-.+-+|.| +.+++.+.... ...++|
T Consensus 347 ~~~~~~~rIvaifQ-P--HrySRt~~~~~dF~~~l-~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~--~~~~~~ 420 (459)
T COG0773 347 QKVPGGKRIVAVFQ-P--HRYSRTRDLLDDFAKAL-SDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG--HVDVPD 420 (459)
T ss_pred HHCCCCCEEEEEEC-C--CCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCC--CCCCCC
T ss_conf 76588866999977-8--73175899999999888-519999996233357888767753999999851377--014788
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 89999999996589889999446886
Q gi|254781102|r 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 445 r~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
..+.++...+.++|||++|..|-|.=
T Consensus 421 ~~~~~~~l~~~~~~gD~il~mGAGdi 446 (459)
T COG0773 421 LDDLVELLAKVAQPGDVILFMGAGDI 446 (459)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 88999999964789998999668847
No 30
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=0 Score=324.83 Aligned_cols=287 Identities=22% Similarity=0.317 Sum_probs=201.5
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 00224565430652000123333321023222223454433235544576753122111111101122333335667666
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~g 193 (497)
+.++||||||||||||+.|++++|+..|.++...|++|. | + +..+. +.++.|+|+||++
T Consensus 101 ~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GNIG~------------p--~-----l~~~~--~~~~~VlElSSfQ 159 (418)
T PRK00683 101 RYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGNIGL------------P--I-----LDGMQ--QPGVRVVEISSFQ 159 (418)
T ss_pred CCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEECCCH------------H--H-----HHHHC--CCCCEEEEEEHHH
T ss_conf 798799976898660999999999867998188803465------------7--7-----76432--5894699831242
Q ss_pred HHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 55543104321--2111232154554321101122345542100000012232111254200012221023565322222
Q gi|254781102|r 194 LDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 (497)
Q Consensus 194 l~~~rl~~i~~--diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g 271 (497)
|+.- ....| ++||+|||++||||||+|+|+|.++|.+|+... ......+++.+....+..... .
T Consensus 160 L~~~--~~~~p~~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~ 225 (418)
T PRK00683 160 LADQ--EESIPVLSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCL-RNPDDLWVGDERSLGNSYLEY-----------V 225 (418)
T ss_pred HHHH--HHCCCCCCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHC-CCCCCEEECCCCCCCHHHHHH-----------H
T ss_conf 3212--4307762212101578424122168999999999999846-797646852541101788887-----------7
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 33332200000014544432112221001012234332221105778887752-02676763111234433455210001
Q gi|254781102|r 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVG 350 (497)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~-lGi~~~~i~~~L~~f~~~~gR~E~i~ 350 (497)
+ ... .+...+ -.+..++.||.+|+++|++++.. .|++.+.+.++|++|+++|||||.+.
T Consensus 226 -~-------~~~--------~~~~~~----~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v~ 285 (418)
T PRK00683 226 -Q-------EIM--------RLLDKG----SALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYLG 285 (418)
T ss_pred -H-------HHH--------HHHCCC----CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf -7-------777--------774453----10165440329889999999998579999999999973488411136888
Q ss_pred CCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHH
Q ss_conf 35578602300-0378689999741211002344403540266-546004689999998619899990887989898999
Q gi|254781102|r 351 TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 (497)
Q Consensus 351 ~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~G-drd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I 428 (497)
.. +|..+|.| -|.||+|+.+||+++. +++|+|+| | +|+.+..++ .+...+.+..+++- +|+...|
T Consensus 286 ~~-~Gv~fiNDSKaTN~~a~~~AL~s~~----~~iilI~G--G~~K~~d~~~L-~~~~~~~vk~v~~~-----G~~~~~i 352 (418)
T PRK00683 286 EK-DGVHYINDSKATTVSAVEKALLAVG----KDVIVILG--GRNKGGDFPSL-LPVLRQTAKHVVAM-----GECRQEI 352 (418)
T ss_pred EE-CCCEEECCCCCCCHHHHHHHHHHCC----CCCEEEEC--CCCCCCCHHHH-HHHHHHCCCEEEEE-----CCCHHHH
T ss_conf 81-7823763776789899999998567----88589975--78766786999-99986318499996-----8899999
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 999983479809978989999999996589889999446886
Q gi|254781102|r 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 429 ~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
.+.+...++ .....|.+||+..|.+.|++||+||+ ..|--
T Consensus 353 ~~~l~~~~~-~~~~~~l~eAv~~a~~~a~~gd~VLL-SPaca 392 (418)
T PRK00683 353 AQALSEKFP-LTVVKDLQEAVSCAQEIAQPGDVILL-SPGCA 392 (418)
T ss_pred HHHHHCCCC-EEECCCHHHHHHHHHHHCCCCCEEEE-CCCCC
T ss_conf 998756998-79859899999999984789898998-97550
No 31
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=1.4e-45 Score=315.87 Aligned_cols=322 Identities=20% Similarity=0.266 Sum_probs=232.9
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC--------CCC-C----------------CCCCCCCCCHH
Q ss_conf 0022456543065200012333332102322222345443--------323-5----------------54457675312
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--------SSF-A----------------QDNRLTTPSPI 168 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~--------~~~-~----------------~~~~~TtP~~~ 168 (497)
..++|.|+|||||+||+.|++++|+++|++++.+.++.-. ++. . .+..+|-.|.+
T Consensus 48 ~~~~IhVaGTNGKGSt~~~l~~il~~~G~~vG~ftSPHl~~~~ERi~ing~~Is~~~~~~~~~~v~~~~~~~~lT~FE~~ 127 (416)
T PRK10846 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIEAARGDISLTYFEYG 127 (416)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 79989996885579999999999998799730778886795101567999128989999999998875068887699999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2111111101122333335667666555431043---2121112321545543211-01122345542100000012232
Q gi|254781102|r 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI---KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPA 244 (497)
Q Consensus 169 ~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i---~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ 244 (497)
++ ..|..+.+.++|++|+|+ ||+ ||+|.+ +|+++|||||+.||.+|+| |+|.|+.+|+.|++. +..+
T Consensus 128 T~-~A~~~F~~~~vD~aVlEv---GLG-GrlDATNvi~~~vsvIT~IglDH~~~LG~Tle~IA~EKAGIik~----g~pv 198 (416)
T PRK10846 128 TL-SALWLFKQAQLDVVILEV---GLG-GRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRS----EKPA 198 (416)
T ss_pred HH-HHHHHHHHCCCCEEEEEE---CCC-EEEHHHCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCC----CCEE
T ss_conf 99-999999856999899983---575-13432138888779988704764200179999999987534227----9808
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11125420001222102356532222233332200000014544432112221001012234332221105778887752
Q gi|254781102|r 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 (497)
Q Consensus 245 ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~ 324 (497)
|+. +.+....+.+.+.+.+.+++.++.+ +. ....+..+.+......+ -.++++ .++..|+..|+++...
T Consensus 199 V~g-~~~~~~~i~~~a~~~~a~l~~~~~d---~~-----~~~~~~~~~~~~~~~~~-~~l~l~-~~~~~Naa~Al~al~~ 267 (416)
T PRK10846 199 VVG-EPEMPSTIADVAQEKGALLQRRGVD---WN-----YSVTDHDWAFSDGDGTL-ENLPLP-NVPQPNAATALAALRA 267 (416)
T ss_pred EEC-CCCHHHHHHHHHHHCCCCEEECCCC---EE-----EEECCCEEEEECCCCCC-CCCCCC-HHHHHHHHHHHHHHHH
T ss_conf 985-8537899999999709977981784---07-----98538737997588625-248886-5799999999999997
Q ss_pred CC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCCHHHH
Q ss_conf 02--676763111234433455210001355786023000378689999741211002-344403540266546004689
Q gi|254781102|r 325 IG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401 (497)
Q Consensus 325 lG--i~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~~kr~~ 401 (497)
++ ++.+.+.++|.+..+ |||||.+. +++.+|+|.||||+|+++..+.++.++ .+|+++|||++.|||.. .
T Consensus 268 ~~~~i~~~~i~~gL~~~~w-pGR~e~i~---~~p~iiLDgAHN~~aa~~L~~~l~~~~~~~k~~~V~g~l~dKD~~---~ 340 (416)
T PRK10846 268 SGLEVSENAIRDGIASAIL-PGRFQIVS---ESPRVIFDVAHNPHAAEYLTGRLKALPKNGRVLAVIGMLHDKDIA---G 340 (416)
T ss_pred CCCCCCHHHHHHHHHHCCC-CCCEEEEC---CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH---H
T ss_conf 3999999999999985777-87512414---798577777859999999999999607799689998413789999---9
Q ss_pred HHHHHHHHCCEEEECC-CCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999986198999908-8798989899999998347980997898999999999658988999944
Q gi|254781102|r 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 402 mg~~a~~~ad~vi~t~-d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
|-+...+.+|.+++|. ++||+.+++.+.+.+.. ....++..+|++.|++.++++|+|||+|
T Consensus 341 ~l~~L~~~~d~~~~~~~~~~Ra~~~~~L~~~l~~----~~~~~~~~~A~~~al~~a~~~d~IlV~G 402 (416)
T PRK10846 341 TLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGN----GKSFDSVAQAWDAAMADAKPEDTVLVCG 402 (416)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9998664468999958999777999999998602----7666999999999998479998599971
No 32
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-43 Score=302.68 Aligned_cols=292 Identities=16% Similarity=0.179 Sum_probs=193.6
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||+.|+.++|+..| +...|++|. | + ..+ +...+++|+|+|||+|
T Consensus 89 ~~~I~ITGTNGKsTtt~li~~iL~~~g--~~~~GNIG~------------P--l------~~~-~~~~~~~VlElSSfQL 145 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMLTHLLEDFG--AVSGGNIGT------------P--L------AEL-DPNAKIWVLETSSFTL 145 (401)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCC--CCEECCCCH------------H--H------HHC-CCCCCEEEEEECHHHC
T ss_conf 874899847777899999999998669--813041664------------3--8------862-8778879999344540
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55431043212111232154554321101122345542100000012232111254200012221023565322222333
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~ 274 (497)
+. +..++|+++|+|||++||||||+|+|+|.++|.+||.. ..++..+++|.+.... ......++|....
T Consensus 146 e~--~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~-~~~~~~~i~~~~~~~~--------~~~~~~i~~~~~~ 214 (401)
T PRK03815 146 HY--TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKL-MNEGSVAILPKKYKET--------PTKAQKISYEDEE 214 (401)
T ss_pred CC--CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHH-CCCCCEEEECHHHCCC--------CCCCEEEEECCHH
T ss_conf 66--75668768988368820523626899999999999962-8877679972233047--------6661799726627
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32200000014544432112221001012234332221105778887752026767631112344334552100013557
Q gi|254781102|r 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 (497)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~ 354 (497)
... . .+. .+. -.+.+.|.|++.+ ++|++++ ..+..+.+.++|.+|+++|||||.+... +
T Consensus 215 ~~~--~---------~~~--i~~----~~i~~~~~~~~~~-~~a~~~~--~~~~~~~~~~~l~~F~gl~HRlE~v~~~-~ 273 (401)
T PRK03815 215 DLA--E---------KFG--IDT----EKINFKGPFLLDA-LLALAVE--KILFDENDYERLNAFVIEAHKLEEFRDK-Q 273 (401)
T ss_pred HHH--H---------HCC--CCH----HHCCCCHHHHHHH-HHHHHHH--HCCCCHHHHHHHHHCCCCCCCEEEEEEE-C
T ss_conf 778--7---------658--877----8705645899999-9999998--5566355899998489988853899984-8
Q ss_pred CCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 8602300-037868999974121100234440354026654600468999999861989999088798989899999998
Q gi|254781102|r 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 355 ~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
|...|.| -|.||+|..+||+++ ...++++|.| |-+|..+..++. +...+....+++- +|+.+.|.+.+.
T Consensus 274 gv~fiNDSKATN~~At~~Al~~~---~~~~iilI~G-G~~Kg~d~~~L~-~~i~~~~~~v~~~-----G~~~~~i~~~~~ 343 (401)
T PRK03815 274 GRLWVDDSKATNIDATIQALKRY---KDKKIHLILG-GDDKGVDLTPLF-EELKNFDIEIYAI-----GSNAEKILALAK 343 (401)
T ss_pred CEEEECCCCCCCHHHHHHHHHHC---CCCCEEEEEC-CCCCCCCHHHHH-HHHHHHCEEEEEE-----CCCHHHHHHHHH
T ss_conf 98996688789889999999837---6786799963-765567879999-9976405699998-----789999999987
Q ss_pred HCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 347980997898999999999658988999944688663
Q gi|254781102|r 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 (497)
Q Consensus 434 ~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~ 472 (497)
..-.......+.+||++.|.+.|++||+||+ ..|---|
T Consensus 344 ~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLL-SPacASf 381 (401)
T PRK03815 344 EFNIKAQKCEFLEKAVNEIKKVLKQNEVALL-SPAAASL 381 (401)
T ss_pred HCCCCEEECCCHHHHHHHHHHHCCCCCEEEE-CCCCCCC
T ss_conf 5698469828699999999985789798998-9744030
No 33
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-43 Score=298.92 Aligned_cols=342 Identities=23% Similarity=0.297 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHCCCC--CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCC--------CCC-CCCCCC------
Q ss_conf 9999999999827620--02245654306520001233333210232222234544--------332-355445------
Q gi|254781102|r 99 RKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--------ISS-FAQDNR------ 161 (497)
Q Consensus 99 ~~aL~~la~~~~~~~~--~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~--------~~~-~~~~~~------ 161 (497)
..-...++.. .++|. .++|.|+|||||+||+.|+.++|.++|++++.+.++.- +++ ...+..
T Consensus 27 L~Ri~~ll~~-LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~ 105 (427)
T COG0285 27 LERISRLLER-LGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFE 105 (427)
T ss_pred HHHHHHHHHH-CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCEECCHHHHHHHHH
T ss_conf 4999999997-399721498699937898424999999999975987146788760764217999999888999999999
Q ss_pred ----------CCCCCHHHHH--HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCC-HHHH
Q ss_conf ----------7675312211--1111101122333335667666555431043---2121112321545543211-0112
Q gi|254781102|r 162 ----------LTTPSPIYLA--KALSYLSSQGVTHVSVEASSHGLDQHRLDGI---KLIAGSFTNLGRDHIDYHQ-TQQA 225 (497)
Q Consensus 162 ----------~TtP~~~~l~--~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i---~~diaviTNI~~dHLd~~g-s~e~ 225 (497)
.+-|.-+++. ..|-.+.+.++|++|+|| ||+ ||+|.+ .|.++|||+|+.||.+++| |+|.
T Consensus 106 ~ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEV---GLG-GRlDATNVi~p~vsvIT~I~lDH~~~LG~tie~ 181 (427)
T COG0285 106 RVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEV---GLG-GRLDATNVIEPDVSVITSIGLDHTAFLGDTLES 181 (427)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC---CCC-CCCCCHHCCCCCEEEECCCCHHHHHHHCCCHHH
T ss_conf 9999752366678747999999999999768999899960---556-664432216876689766472578886866999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCC-CHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECC
Q ss_conf 23455421000000122321112-542-0001222102356532222233332200000014544432112221001012
Q gi|254781102|r 226 YFNAKMRLFEELLPKESPAIIYA-DDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 (497)
Q Consensus 226 y~~aK~~If~~~~~~~~~~ViN~-Dd~-~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 303 (497)
|+.+|+.||+... .+|+-. +.| ....+.+.+....+++..++.+.. ... .+..+.+...+....+.
T Consensus 182 IA~EKAGI~k~g~----P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~ 249 (427)
T COG0285 182 IAREKAGIIKAGK----PAVIGEQQPPEALNVIAERAEELGAPLFVLGPDFQ---VLE-----EGNGFSFQGGGGLLDLP 249 (427)
T ss_pred HHHHHHCCCCCCC----CEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCHH---HCC-----CCCEEEEECCCEEEEEC
T ss_conf 9998640125799----57988889878999999998751897465173322---104-----65268873377045541
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 2343322-21105778887752026--76763111234433455210001355786023000378689999741211002
Q gi|254781102|r 304 FPLPGEF-QVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 (497)
Q Consensus 304 l~l~G~h-ni~NalaAia~a~~lGi--~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~ 380 (497)
+|++|.| |+.||+.|++++..++. +.+.|.++|.+..+ |||||++.. ++.+++|-||||+|++++.+.++...
T Consensus 250 lp~l~~~~Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~~---~p~i~lDgAHNp~aa~~La~~l~~~~ 325 (427)
T COG0285 250 LPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDW-PGRLERLSE---NPLILLDGAHNPHAARALAETLKTLF 325 (427)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-CCEEEEECC---CCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 66566305788899999999983142889999999986768-733788337---97499988899999999999999773
Q ss_pred CC-C-CCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC-CCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC
Q ss_conf 34-4-403540266546004689999998619899990-88798989899999998347980997898999999999658
Q gi|254781102|r 381 SG-R-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457 (497)
Q Consensus 381 ~~-r-~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t-~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~ 457 (497)
.. + +++|||+.-|||.. .|-+...+..+++++| .+.||..+++.+.+-...... .. ..|..+|++.+.+.+.
T Consensus 326 ~~~~~~~~v~g~l~dKd~~---~~l~~L~~~~~~~~~~~~~~~ra~~~~~l~~~~~~~~~-~~-~~~~~~a~~~~~~~~~ 400 (427)
T COG0285 326 NDRPRLTLVFGMLKDKDIA---GMLAALLPIVDEIYTTPLPWPRALDAEELLAFAGERGG-VE-LDDVAEALELALEKAD 400 (427)
T ss_pred CCCCCEEEEEEEECCCCHH---HHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHCC
T ss_conf 3577528999832588889---99997406476899825897354899999999876357-85-0039999999997157
Q ss_pred CCCEEEEEC
Q ss_conf 988999944
Q gi|254781102|r 458 KQDVLVVAG 466 (497)
Q Consensus 458 ~gDvili~G 466 (497)
++|.+||+|
T Consensus 401 ~~~~ilV~G 409 (427)
T COG0285 401 EDDLVLVTG 409 (427)
T ss_pred CCCEEEEEE
T ss_conf 997499982
No 34
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6.3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see ). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process.
Probab=100.00 E-value=7.6e-43 Score=297.44 Aligned_cols=336 Identities=24% Similarity=0.301 Sum_probs=244.9
Q ss_pred CCEEEEEEEECCCEEHHHHHHHH-HHCCCCCCCCCCCCC--------CCC-CCCCC-----------------CCCCC--
Q ss_conf 02245654306520001233333-210232222234544--------332-35544-----------------57675--
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTST--------ISS-FAQDN-----------------RLTTP-- 165 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL-~~~g~~~~~~g~~~~--------~~~-~~~~~-----------------~~TtP-- 165 (497)
.++|.|+|||||.||+.|+++|| +.+|+++|.+.++.. +++ ...+. ..+.+
T Consensus 21 ~~~IHVaGTNGKGST~a~l~~iL~~~~G~~VG~fTSPHl~~f~ERI~~nG~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (460)
T TIGR01499 21 LPVIHVAGTNGKGSTCAFLESILREAAGYKVGLFTSPHLVSFNERIRVNGEPISDEELAQAFEQVRPILKKLSQETEYSQ 100 (460)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 97799972068758999999998875397788887373874223478988576889999999999998753310135877
Q ss_pred ----CHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHCCC---C-CCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHH
Q ss_conf ----31221111111011-22333335667666555431043---2-121112321545543211-01122345542100
Q gi|254781102|r 166 ----SPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGI---K-LIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFE 235 (497)
Q Consensus 166 ----~~~~l~~~l~~~~~-~g~~~~vlEvSS~gl~~~rl~~i---~-~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~ 235 (497)
|-+++. .|..|++ .++|++|||| ||+ ||+|++ . |.+++||+|+.||.+++| |+++||.+|+.||+
T Consensus 101 ~t~FE~~T~~-Af~~F~~~~~vd~av~EV---GlG-GrlDaTNv~~~p~~~~iT~ig~DH~~~LG~t~~~IA~eKAGI~k 175 (460)
T TIGR01499 101 PTFFELLTLL-AFLYFAQLAQVDVAVLEV---GLG-GRLDATNVVEKPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK 175 (460)
T ss_pred CCHHHHHHHH-HHHHHHHHCCCCEEEEEE---CCC-CCCCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 7789999999-999999850882899987---376-54455441138637997277768886505337999997457621
Q ss_pred HCCCCCCCCCCCC-CCC-CHHHHHHHCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEE-EC--CCCCCCC
Q ss_conf 0000122321112-542-0001222102356-532222233332200000014544432112221001-01--2234332
Q gi|254781102|r 236 ELLPKESPAIIYA-DDA-YSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF--LFPLPGE 309 (497)
Q Consensus 236 ~~~~~~~~~ViN~-Dd~-~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~l~l~G~ 309 (497)
... .+|+.. +.+ ....+.++|...+ .+++.++.. +.+........+..+.+....... ++ .++|+|.
T Consensus 176 ~g~----P~v~~~~~~~ea~~v~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~G~ 248 (460)
T TIGR01499 176 EGV----PIVTGEVQEPEALEVLKKKAEEKGAAPLQVVGKD---FDIKEKDENLNGEKFSFSGENLFLEPLLAKLSLLGD 248 (460)
T ss_pred CCC----CEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCC---CCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCHH
T ss_conf 676----5687148866899999999997168604650341---322111122465212223555421001355565679
Q ss_pred CCCCHHHHHHHHHHHCCC------CHHHHH-HHHHHHHHHHHHHCCCCCCC----CCCEEEECCCCCHHHHHHHHHHHH-
Q ss_conf 221105778887752026------767631-11234433455210001355----786023000378689999741211-
Q gi|254781102|r 310 FQVYNALVAAGLCIAIGI------DSALVL-EHLEKLHVVPGRFEFVGTNS----RGGRIYVDYAHTSNSLEMILKNIR- 377 (497)
Q Consensus 310 hni~NalaAia~a~~lGi------~~~~i~-~~L~~f~~~~gR~E~i~~~~----~~~~viiDyahNP~s~~~aL~~l~- 377 (497)
||+.|+..|++.+..++. +...+. +||.+..+ |||+|++.... .++.|++|.||||+|++++.+.++
T Consensus 249 ~Q~~Na~~A~~~~~~l~~~~~~~~~~~~~~~~GL~~~~w-pGR~e~~~~~~~~~~~~p~~~lDGAHNp~~~~~l~~~~~~ 327 (460)
T TIGR01499 249 HQAENAALALAALEVLGKQSSEKLSEAAIRSEGLASTIW-PGRLEILSEDKDAKAANPNILLDGAHNPHSAEALVEWLKE 327 (460)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999999998502356666766788898885111-2201133035412233871799527687899999999999
Q ss_pred -HCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCE-----EEEC-CCCCCCCCHHHHHHHHHHCCCC-----EEEECCH
Q ss_conf -00234440354026654600468999999861989-----9990-8879898989999999834798-----0997898
Q gi|254781102|r 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----AIVT-DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNR 445 (497)
Q Consensus 378 -~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~-----vi~t-~d~~r~e~~~~I~~~i~~g~~~-----~~~~~dr 445 (497)
.+.+.++++|||+.-|||.. .|-...-+..+. +++| .+.||..+++.+.......... .....|.
T Consensus 328 ~~~~~~~~~~~~~~l~~Kd~~---~~l~~L~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (460)
T TIGR01499 328 KEFNGRPITLLFGALADKDAA---AMLALLRELVPKIFEEIVYVTPFDYPRALDAADLEAAAEAFGSEELEKAAETVSSW 404 (460)
T ss_pred HHHCCCCCEEEEEECCCCCHH---HHHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 862699718888611368878---99888787435652217686177862336757899999740541566778767308
Q ss_pred HHHHHHH---------------------HH--HCCCCCEEEEEC
Q ss_conf 9999999---------------------99--658988999944
Q gi|254781102|r 446 IEAIRTA---------------------IE--MLNKQDVLVVAG 466 (497)
Q Consensus 446 ~eAi~~A---------------------~~--~a~~gDvili~G 466 (497)
++|++.+ .+ .++++|-|||+|
T Consensus 405 ~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lVtG 448 (460)
T TIGR01499 405 REALELAEKLDEAQKVSALIEIAYLLVALEKEKAKADDLILVTG 448 (460)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 99997166787655102457789888888750567677378872
No 35
>pfam08245 Mur_ligase_M Mur ligase middle domain.
Probab=100.00 E-value=1.3e-39 Score=276.51 Aligned_cols=185 Identities=31% Similarity=0.505 Sum_probs=154.6
Q ss_pred EEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 65430652000123333321023222223454433235544576753122111111101122333335667666555431
Q gi|254781102|r 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 (497)
Q Consensus 120 ITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl 199 (497)
||||||||||++|++++|+..|.+++..|+. |..+.+...+..+.+.+.+|+|+|+||+++.+.|+
T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~--------------~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l 66 (188)
T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNT--------------NNAIGLPLLLALMERKGADYAVLELSSFGLGEGRL 66 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCC--------------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9375868999999999998389989983884--------------74577999997666469968999832777107655
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-CCC
Q ss_conf 043-212111232154554321101122345542100000012232111254200012221023565322222333-322
Q gi|254781102|r 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277 (497)
Q Consensus 200 ~~i-~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~-~~~ 277 (497)
..+ +|+++|||||++||||+|||+|+|+++|.+||+. .++++.+|+|.||++...+.+. ...++++||... +++
T Consensus 67 ~~~~~P~iaviTNi~~DHld~~~s~e~~~~~K~~i~~~-~~~~g~~v~n~Dd~~~~~~~~~---~~~~~~t~g~~~~~d~ 142 (188)
T pfam08245 67 EGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEG-LPEDGIAVINADDPELAKRLKN---AGAKVITFGLENEADD 142 (188)
T ss_pred CCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---CCCCEEEEECCCCCCE
T ss_conf 27778999999457655646621799999999999972-9999999998988889999986---6984699856876560
Q ss_pred CCCEECCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0000001454443211-22210010122343322211057788877
Q gi|254781102|r 278 HLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~i-~~~~~~~~~~l~l~G~hni~NalaAia~a 322 (497)
+...+.....+..+.+ ..++..++++++++|+||++|+++|+++|
T Consensus 143 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188)
T pfam08245 143 RAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188)
T ss_pred EEEEEEECCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 4467899589968999962993899998866399999999999959
No 36
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=100.00 E-value=2e-33 Score=236.34 Aligned_cols=374 Identities=21% Similarity=0.292 Sum_probs=255.1
Q ss_pred EECCCCCCC--CCEEEEECCCC-CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 530231468--98899803887-676888999998598899984732233343223479709997998999999999982
Q gi|254781102|r 34 SSDSRHIQA--GWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110 (497)
Q Consensus 34 ~~DSr~v~~--g~lFval~G~~-~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~ 110 (497)
-+|.-+..| -|++|- |+- .-|+.-++..+++ ++||+ .-|+.- .+.- ++
T Consensus 51 gfD~~QL~~~~pD~~vi--GNa~~RG~p~VE~vL~~----------------------nl~Y~--SGPQWL-~d~~--L~ 101 (459)
T TIGR01081 51 GFDAAQLEPFKPDLVVI--GNAMKRGNPCVEAVLEK----------------------NLPYT--SGPQWL-HDFV--LR 101 (459)
T ss_pred CCCHHHCCCCCCCEEEE--CCCCCCCCHHHHHHHHC----------------------CCCCC--CCCCHH-HHHH--HH
T ss_conf 77844400348887998--46331674467898726----------------------89502--175105-6334--21
Q ss_pred CCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76200224565430652000123333321023222-2234544332355445767-531221111111011223333356
Q gi|254781102|r 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVE 188 (497)
Q Consensus 111 ~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~-~~g~~~~~~~~~~~~~~Tt-P~~~~l~~~l~~~~~~g~~~~vlE 188 (497)
.+ =|+||.||+|||||+.|++.+|+..|++.+ ++| |..+|+....++.. |- .--.....|.|+|
T Consensus 102 dr---WVlaV~GTHGKTTT~~M~~WvLE~~G~~pGFliG--Gv~gNFgvSArLg~~pr---------~dp~~~S~fFviE 167 (459)
T TIGR01081 102 DR---WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIG--GVPGNFGVSARLGETPR---------QDPNSQSPFFVIE 167 (459)
T ss_pred CC---EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEC--CCCCCCCEEEECCCCCC---------CCCCCCCCEEEEE
T ss_conf 34---2789507886046889999999863798872673--42453421420687756---------6745468757995
Q ss_pred CCHH--HHHHHHHCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 6766--6555431043--21211123215455432110112234554210000001223211125420001222102356
Q gi|254781102|r 189 ASSH--GLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 (497)
Q Consensus 189 vSS~--gl~~~rl~~i--~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~ 264 (497)
+-.+ +---+|-..+ +|-..|+-||.-||-|-|.+++++.+-=--|. +..|..|..+.|..+...+..++. +
T Consensus 168 ADEYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIFddL~AI~~QFHhlv-R~vP~~G~i~~~~~~~~l~~~l~~----G 242 (459)
T TIGR01081 168 ADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLV-RTVPGEGLILAPERDQSLKDTLAK----G 242 (459)
T ss_pred CCCCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE-EEECCCCEEECCCHHHHHHHHHHH----C
T ss_conf 35656510025433120276001451555444557876899874030688-964688648435014689999860----6
Q ss_pred CC--CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 53--2222233332200000014544432112221001-01223433222110577888775202676763111234433
Q gi|254781102|r 265 CR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 265 ~~--~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
|+ .-.+|.+. ...-.....+++.|.+-..|+.. ++.-.|.|+||..|+|+|||+|+..|+.++..+++|..|..
T Consensus 243 CWs~~e~~G~~~---~W~A~~~~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aIAAArHvGV~~~~Ac~ALG~F~N 319 (459)
T TIGR01081 243 CWSEQEFLGEQG---EWQAEKITADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAIAAARHVGVAIEDACEALGSFVN 319 (459)
T ss_pred CCCCHHCCCCCC---CHHHHHHCCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
T ss_conf 872011246777---50576540451000220178436776533304600135899998742167687899987032001
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--CCCCEEEECCCCCCCCHHHHHH------HHHHHHCCEE
Q ss_conf 4552100013557860230003786899997412110023--4440354026654600468999------9998619899
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMG------KIALDLADIA 413 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~--~r~i~V~G~~Gdrd~~kr~~mg------~~a~~~ad~v 413 (497)
..+|||+ +..-|+.+||+||||+|.++.++|.+||+--+ .|+++||- =|-. +=+|| ..+...||.|
T Consensus 320 ~kRRlE~-kG~~Ng~TVYDDFAHHP~AI~~Tl~~LR~kVGG~~rIlAVLE---PRSn--TMKlG~~K~~la~sL~~AD~V 393 (459)
T TIGR01081 320 AKRRLEL-KGEANGVTVYDDFAHHPTAIEATLAALRDKVGGGARILAVLE---PRSN--TMKLGVHKDDLAPSLGRADEV 393 (459)
T ss_pred CCEEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC---CCCC--CCCCCCCHHHHHHHHHHCCEE
T ss_conf 2001567-211313787327667868999999998752399706999877---8744--100343255666766600356
Q ss_pred EECCCC-CCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 990887-98989899999998347-980997898999999999658988999944688
Q gi|254781102|r 414 IVTDDN-PRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 414 i~t~d~-~r~e~~~~I~~~i~~g~-~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~ 469 (497)
++-.-. -.+ . .+++.+.+ .+...-.|..+=+...++.|++||-||+..-|-
T Consensus 394 f~~~p~~~~W----~-V~e~~~~~~~p~~~~~~~D~~v~~ivk~A~~gD~ILVMSNGg 446 (459)
T TIGR01081 394 FLLQPEQIPW----E-VAEVAEQCVQPANVSADLDELVAMIVKEAQPGDHILVMSNGG 446 (459)
T ss_pred EEECCCCCCH----H-HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 5316898870----5-999998602402110107899999996058887589974688
No 37
>KOG2525 consensus
Probab=99.93 E-value=2.4e-26 Score=190.29 Aligned_cols=319 Identities=24% Similarity=0.271 Sum_probs=196.9
Q ss_pred CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCC----------------------CCCCCC
Q ss_conf 002245654306520001233333210232222234544332------3554----------------------457675
Q gi|254781102|r 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS------FAQD----------------------NRLTTP 165 (497)
Q Consensus 114 ~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~------~~~~----------------------~~~TtP 165 (497)
+.++|.|+||+||.||+.++.+||++.|.++|.+.++.-+.. +..+ ...+.|
T Consensus 71 ~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p 150 (496)
T KOG2525 71 SLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMP 150 (496)
T ss_pred HEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 22479982378986458989999984263663226800155324588899878999999999999998877630656787
Q ss_pred CHHHHHH--HHHHHCCCCCCCCCCCCCHHHHHHHHHCCC----CCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCC
Q ss_conf 3122111--111101122333335667666555431043----2121112321545543211-01122345542100000
Q gi|254781102|r 166 SPIYLAK--ALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELL 238 (497)
Q Consensus 166 ~~~~l~~--~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i----~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~ 238 (497)
.-+.+.- .|..+...+++++|+|| ||+ ||.|.. +|-+..||+||.||+++.| ++++|+.+|+.||+...
T Consensus 151 ~yF~fLT~lAF~~F~~enVdvaViEv---GlG-G~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gv 226 (496)
T KOG2525 151 TYFEFLTLLAFHVFVKENVDVAVIEV---GLG-GELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGV 226 (496)
T ss_pred CHHHHHHHHHHEEEEECCCCEEEEEE---CCC-CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 35556675442015555886899984---356-66566533136458998405775288886589999887446240588
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
Q ss_conf 01223211125420001222102356532222233332200000014544432112221001012234332221105778
Q gi|254781102|r 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 (497)
Q Consensus 239 ~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaA 318 (497)
|- ..+..+++....+.+++.+..+...-.... ..+ .+ -...+.+.|.||..|+..|
T Consensus 227 pa---ft~~q~~e~~nvL~~ra~e~~~~L~~v~p~-~~~--------------~l------s~~~lgl~g~hq~~na~lA 282 (496)
T KOG2525 227 PA---FTVPQPPEALNVLKERASELGVPLFVVPPL-EAY--------------EL------SGVNLGLIGTHQWSNASLA 282 (496)
T ss_pred CE---EECCCCHHHHHHHHHHHHHCCCCCEECCCC-HHH--------------HH------CCCCCCCCCCCHHHHHHHH
T ss_conf 54---875885788999999887337883553881-465--------------50------4876540065134435789
Q ss_pred HHHHHHC----C---------------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH-
Q ss_conf 8877520----2---------------6767631112344334552100013557860230003786899997412110-
Q gi|254781102|r 319 AGLCIAI----G---------------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378 (497)
Q Consensus 319 ia~a~~l----G---------------i~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~- 378 (497)
+.++..+ | +| +....||.++.+ |||+|++.. +++.+++.|.||||+||+++-.-++.
T Consensus 283 ~~L~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~GL~~~~w-PGR~qil~~-~~~~~~llDGAHt~eSaea~~~w~~~~ 359 (496)
T KOG2525 283 VQLASEWLIQNGRVAEGVLDALQTSGLIP-PAFLSGLASTDW-PGRLQILEY-GRGVTWLLDGAHTKESAEACAKWFRKA 359 (496)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC-HHHHCCHHHCCC-CCCEEEEEC-CCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 88899999863850105787322366789-899612032457-870689862-898579965899989999999999998
Q ss_pred C---CCCC-CCEEEECCCCCCCCHHHHHHHHHH------HHCCEEEECC-C---CC-CC-------CC----------HH
Q ss_conf 0---2344-403540266546004689999998------6198999908-8---79-89-------89----------89
Q gi|254781102|r 379 I---TSGR-IIVVFGCGGDRDQGKRPIMGKIAL------DLADIAIVTD-D---NP-RS-------ED----------PE 426 (497)
Q Consensus 379 ~---~~~r-~i~V~G~~Gdrd~~kr~~mg~~a~------~~ad~vi~t~-d---~~-r~-------e~----------~~ 426 (497)
. .+.+ +|++|-|+||||.. .+-+..- -..+.|+++. . +| +. +. -+
T Consensus 360 ~~~~~~~~~~illfn~t~~~d~~---~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~~~~s~~~~l~~q~~L~ 436 (496)
T KOG2525 360 VRGLKKLTSLILLFNCTSDRDPP---LLLPLLKPDAVIGTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQLNWQNDLQ 436 (496)
T ss_pred HCCCCCCCCEEEEEEECCCCCHH---HHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf 53677765269999803776647---676774546543445141785244311587666455415677268777758999
Q ss_pred HHHHHHHHCC----CCEEEECCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999998347----980997898999999999658988999944
Q gi|254781102|r 427 KIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 427 ~I~~~i~~g~----~~~~~~~dr~eAi~~A~~~a~~gDvili~G 466 (497)
++-.++..+- ....+......|++........-+.+.++|
T Consensus 437 ~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~g 480 (496)
T KOG2525 437 SVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVLG 480 (496)
T ss_pred HHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999865588731323673459999999984277777089998
No 38
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.88 E-value=8.1e-23 Score=167.40 Aligned_cols=86 Identities=44% Similarity=0.816 Sum_probs=80.8
Q ss_pred HHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 45521000135578602300037868999974121100234440354026654600468999999861989999088798
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r 421 (497)
+|||||++.. .++++||+||||||+|++++|+++++++.+|+|+|||++||||..+|+.||+++.+++|.+|+|+||||
T Consensus 1 vpGR~e~i~~-~~~~~vi~DyaHnp~~~~a~l~~~~~~~~~r~i~V~G~~g~r~~~~r~~~g~~a~~~ad~viit~~~p~ 79 (87)
T pfam02875 1 VPGRLEVVGE-NNGVLVIDDYAHNPDALEAALQALKELFDGRLILVFGAGGDRDAEFHALLGALAAALADVVILTGDYPR 79 (87)
T ss_pred CCCCCEEEEC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 9997389865-899789996789969999999999862688789999998888678999999999971999999998899
Q ss_pred CCCHHHH
Q ss_conf 9898999
Q gi|254781102|r 422 SEDPEKI 428 (497)
Q Consensus 422 ~e~~~~I 428 (497)
+|+|..|
T Consensus 80 ~Edp~~i 86 (87)
T pfam02875 80 AEEPGAA 86 (87)
T ss_pred CCCHHHC
T ss_conf 9881421
No 39
>pfam01225 Mur_ligase Mur ligase family, catalytic domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.74 E-value=1.2e-17 Score=133.86 Aligned_cols=76 Identities=34% Similarity=0.468 Sum_probs=68.4
Q ss_pred CEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 30024530231468988998038876768889999985988999847322333432234797099979989999999999
Q gi|254781102|r 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 (497)
Q Consensus 29 ~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~ 108 (497)
+|++|++|||.+++|++|||++|.++|||+|+++|+++||.+++++.... ..+.++|+|.|+|++++|+++|+.
T Consensus 1 eI~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~GA~ai~~~~~~~------~~~~~~~~i~v~d~~~aL~~la~~ 74 (76)
T pfam01225 1 EIHFIGIDSRGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSAIPR------DPNPEVPGIPVIDRREALAELAAR 74 (76)
T ss_pred CCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC------CCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 90658878772799999998077867999999999980998999936545------679997399989999999999997
Q ss_pred HH
Q ss_conf 82
Q gi|254781102|r 109 LY 110 (497)
Q Consensus 109 ~~ 110 (497)
||
T Consensus 75 fy 76 (76)
T pfam01225 75 FY 76 (76)
T ss_pred HC
T ss_conf 69
No 40
>PRK05439 pantothenate kinase; Provisional
Probab=97.38 E-value=0.00028 Score=47.04 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=47.9
Q ss_pred HHCCCCC---CEEEEEEEE--CCCEEHHHHHHHHHHC--CCCCCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHHH
Q ss_conf 8276200---224565430--6520001233333210--232222234544332355------44576753122111111
Q gi|254781102|r 109 LYGKHPE---NILAVTGTS--GKSSVASFVQQICQRS--GLSSFQIGPTSTISSFAQ------DNRLTTPSPIYLAKALS 175 (497)
Q Consensus 109 ~~~~~~~---~vIgITGTn--GKTTt~~~l~~iL~~~--g~~~~~~g~~~~~~~~~~------~~~~TtP~~~~l~~~l~ 175 (497)
|.+.... -||||+||. ||+||+.++..+|+.. ..++.++.|.|-+.++.. ..+-+-||++++..++.
T Consensus 77 FL~~~~~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypNa~L~~rglm~RKGFPESYD~~~Ll~ 156 (312)
T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPNAELKERGLMKRKGFPESYDMRALLR 156 (312)
T ss_pred HCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 60799889998999762010262889999999995078999458993466557868998767712478985447999999
Q ss_pred HH--CCCCCCCCCCCCCHH
Q ss_conf 10--112233333566766
Q gi|254781102|r 176 YL--SSQGVTHVSVEASSH 192 (497)
Q Consensus 176 ~~--~~~g~~~~vlEvSS~ 192 (497)
.+ +..|.+.+..-+=||
T Consensus 157 Fl~~vKsG~~~v~aPvYSH 175 (312)
T PRK05439 157 FLSDVKSGKPNVKAPVYSH 175 (312)
T ss_pred HHHHHHCCCCCCCCEEECH
T ss_conf 9999976998766403336
No 41
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=97.20 E-value=0.0026 Score=40.77 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 97678786678988732033556555743002453023146898899803887676888999998598899984732233
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~ 80 (497)
|+|++|- ++++..-. -..|.+|++++ +-....+|+|=|+ ...+|++.+.+-.|+++|+......
T Consensus 3 ~tL~eIA-----~~lgg~l~---Gd~d~~I~gva-~l~~A~~~~IsF~------~~~ky~~~L~~tkAsavIv~~~~~~- 66 (343)
T PRK00892 3 LTLAELA-----EQLGAELH---GDGDIEITGLA-PLDEAGPGQLSFL------DNPKYRKQLKDTQAGAVIVSPDDAE- 66 (343)
T ss_pred CCHHHHH-----HHHCCEEE---CCCCCEEECCC-CHHHCCCCCEEEE------ECHHHHHHHHCCCCEEEEECHHHHH-
T ss_conf 3199999-----97599997---79982796454-9666899809999------5888888875578749995478885-
Q ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 343223479709997998999999999982762
Q gi|254781102|r 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 (497)
Q Consensus 81 ~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~ 113 (497)
....+.++|+|+||+.++.++.+.|+..+
T Consensus 67 ----~~~~~~~~Iiv~nP~~afaki~~lF~~~~ 95 (343)
T PRK00892 67 ----KVPAHRAALVVKNPYLAFARVAQLFDTPP 95 (343)
T ss_pred ----HCCCCCCEEEECCHHHHHHHHHHHHCCCC
T ss_conf ----57588738998998999999999746764
No 42
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0031 Score=40.20 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=75.8
Q ss_pred HHHHHHHHCCCC-CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCC-------CCC-CCCCCCCCCC-CCC----
Q ss_conf 999999827620-022456543--065200012333332102322222345-------443-3235544576-753----
Q gi|254781102|r 103 SLFASRLYGKHP-ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPT-------STI-SSFAQDNRLT-TPS---- 166 (497)
Q Consensus 103 ~~la~~~~~~~~-~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~-------~~~-~~~~~~~~~T-tP~---- 166 (497)
.++-...+.+.. ..+|||||+ .||+|..+-+..-|...|.+++.+... |.+ ++..-...++ .|.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR 117 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR 117 (323)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
T ss_conf 99999973117998378731799886688999999999977967899998899998785301207667764469981784
Q ss_pred -----------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -----------1221111111011223333356676665554310432-1211123215455432110112234554210
Q gi|254781102|r 167 -----------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 (497)
Q Consensus 167 -----------~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~-~diaviTNI~~dHLd~~gs~e~y~~aK~~If 234 (497)
+-.....+.-+...|+|+.++|.+ |.+|..++-++ .|..+++-+. |.=+.+...|..++
T Consensus 118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETV--GvGQsev~I~~~aDt~~~v~~p-------g~GD~~Q~iK~Gim 188 (323)
T COG1703 118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETV--GVGQSEVDIANMADTFLVVMIP-------GAGDDLQGIKAGIM 188 (323)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCHHHHHHHCCEEEEEECC-------CCCCHHHHHHHHHH
T ss_conf 26877651016688999999998618988999814--7884155776521668999657-------88827888874146
Q ss_pred HHCCCCCCCCCCCCCCCCH
Q ss_conf 0000012232111254200
Q gi|254781102|r 235 EELLPKESPAIIYADDAYS 253 (497)
Q Consensus 235 ~~~~~~~~~~ViN~Dd~~~ 253 (497)
+ -....|+|..|...
T Consensus 189 E----iaDi~vINKaD~~~ 203 (323)
T COG1703 189 E----IADIIVINKADRKG 203 (323)
T ss_pred H----HHHEEEEECCCHHH
T ss_conf 5----40335672567265
No 43
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD. UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins.
Probab=94.83 E-value=0.13 Score=29.73 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 74300245302314689889980388767688899999859889998473223334322347970999799899999999
Q gi|254781102|r 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106 (497)
Q Consensus 27 d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la 106 (497)
|.+|+|++. =...++|+|=|. +..+|.++.-+-.|+++|+..+... ....+.++|+|+||..++.+++
T Consensus 2 d~~I~~va~-l~~A~~~~isF~------~n~ky~~~l~~t~A~aviv~~~~~~-----~~~~~~~~Iiv~nP~~afa~i~ 69 (72)
T pfam04613 2 DREISGIAP-LEEAGPGDISFL------ANPKYLKQLKTTKASAVIVTPDFAD-----LVPEGIALLVVKNPYLAFAKLL 69 (72)
T ss_pred CCEEECCCC-HHHCCCCCEEEE------CCHHHHHHHHHCCCCEEEECHHHHH-----HCCCCCCEEEECCHHHHHHHHH
T ss_conf 947804547-643899978996------6887899998688989997378874-----5768986899899899999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254781102|r 107 SRL 109 (497)
Q Consensus 107 ~~~ 109 (497)
+.|
T Consensus 70 ~lF 72 (72)
T pfam04613 70 QLF 72 (72)
T ss_pred HHC
T ss_conf 759
No 44
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.22 Score=28.26 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=43.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHH---HHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 8775202676763111234433455210001355786023000---37-8689---999741211002344403540266
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNS---LEMILKNIRTITSGRIIVVFGCGG 392 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s---~~~aL~~l~~~~~~r~i~V~G~~G 392 (497)
..+..+|+|.+.+. ....++.. ++. .+. -.|+||- +| |..- |+..++.+.+-..-...+|+.+..
T Consensus 273 tYa~Il~iPv~vv~-~~~el~~a---l~~---~~~-DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt 344 (432)
T PRK12724 273 RYADTMGMPFYPVK-DIKKFKET---LAR---DGS-ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHHHHCCCEEEEE-CHHHHHHH---HHH---CCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99998599459951-89999999---985---699-99999299989789999999999998636678851799997889
Q ss_pred CCCCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf 546004689999998619----899990
Q gi|254781102|r 393 DRDQGKRPIMGKIALDLA----DIAIVT 416 (497)
Q Consensus 393 drd~~kr~~mg~~a~~~a----d~vi~t 416 (497)
. ...|-++..+|. +.+|||
T Consensus 345 k-----~~dl~~ii~~f~~l~~~~lIfT 367 (432)
T PRK12724 345 S-----YHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred C-----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9-----8999999998426999849997
No 45
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.80 E-value=0.32 Score=27.17 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEECCCCCCCCCEEE
Q ss_conf 453023146898899
Q gi|254781102|r 33 VSSDSRHIQAGWIFV 47 (497)
Q Consensus 33 i~~DSr~v~~g~lFv 47 (497)
+-.+||.|++|-.|.
T Consensus 27 vIls~r~i~~g~~~~ 41 (407)
T COG1419 27 VILSNRRIKKGGFLG 41 (407)
T ss_pred EEEECCEECCCCEEE
T ss_conf 885433634782563
No 46
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=94.71 E-value=0.036 Score=33.29 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.6
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
++|-|| |-.|||||+.-+..-|...|+++..+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 49999448887674310677899999739859999
No 47
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=94.10 E-value=0.057 Score=32.00 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=65.8
Q ss_pred HHHHHHCCC-CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCC----CCCC---------C
Q ss_conf 999982762-0022456543--0652000123333321023222223454----43323554----4576---------7
Q gi|254781102|r 105 FASRLYGKH-PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPTS----TISSFAQD----NRLT---------T 164 (497)
Q Consensus 105 la~~~~~~~-~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~~----~~~~~~~~----~~~T---------t 164 (497)
+.+..+... ...+|||||+ .||+|-.+-+...|...|++++.+.... +-+...++ ..+. .
T Consensus 18 ll~~~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~ 97 (267)
T pfam03308 18 LLRRLMPLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSS 97 (267)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEC
T ss_conf 99998743599559987689988799999999999996898689999789998888630010777765058998588645
Q ss_pred C-------CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5-------31221111111011223333356676665554310432-121112321545543211011223455421000
Q gi|254781102|r 165 P-------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 (497)
Q Consensus 165 P-------~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~-~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~ 236 (497)
| -+-.....+.-+...|.|+.++|+- |.+|..++-.. .|..++.-+ | ++=+++...|+.|++
T Consensus 98 ~srg~lGGls~~t~~~i~lleaaGfD~IivETV--GVGQsE~~v~~~aD~~llv~~-P------g~GDeiQ~iKaGImE- 167 (267)
T pfam03308 98 PSRGALGGLSRATREAILLLDAAGFDVIIIETV--GVGQSEVDIANMADTFVLVTI-P------GGGDDLQGIKAGLME- 167 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHCCEEEEEEC-C------CCCHHHHHHHHHHHH-
T ss_conf 778888871476999999999779999999247--777530355541576899955-8------876088898753765-
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 000122321112542
Q gi|254781102|r 237 LLPKESPAIIYADDA 251 (497)
Q Consensus 237 ~~~~~~~~ViN~Dd~ 251 (497)
. ....|+|..|.
T Consensus 168 i---aDi~vVNKaD~ 179 (267)
T pfam03308 168 I---ADIYVVNKADL 179 (267)
T ss_pred H---CCEEEEECCCH
T ss_conf 3---54899966764
No 48
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=93.92 E-value=0.043 Score=32.82 Aligned_cols=136 Identities=21% Similarity=0.240 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCC-CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCC----C-------CCCC
Q ss_conf 999999827620-022456543--06520001233333210232222234----5443323554----4-------5767
Q gi|254781102|r 103 SLFASRLYGKHP-ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQD----N-------RLTT 164 (497)
Q Consensus 103 ~~la~~~~~~~~-~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~----~~~~~~~~~~----~-------~~Tt 164 (497)
++|-...+.... .++|||||. .||+|--+-+..-|..-|++++.+.. +-+-+...+| . -++.
T Consensus 25 ~~ll~~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~d 104 (333)
T TIGR00750 25 KELLERILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTD 104 (333)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999862432790787664688885777999998999765976899988797597551454568877544222233228
Q ss_pred CCHH-------------H--HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5312-------------2--11111110112233333566766655543104321-211123215455432110112234
Q gi|254781102|r 165 PSPI-------------Y--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTNLGRDHIDYHQTQQAYFN 228 (497)
Q Consensus 165 P~~~-------------~--l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~-diaviTNI~~dHLd~~gs~e~y~~ 228 (497)
|..+ + -..++.-+-..|+|..++|+= |-+|.+++-++. |..|+..|.. +=+++.-
T Consensus 105 Pg~FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI~vETV--GVGQSEVdi~~~aDT~v~v~~pg-------~GDd~Q~ 175 (333)
T TIGR00750 105 PGVFIRSMPTRGSLGGLSKATRELVKLLDAAGYDVILVETV--GVGQSEVDIINMADTFVVVTIPG-------TGDDVQG 175 (333)
T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCHHHHHHHHHHCEEEEEECCC-------CCCHHHH
T ss_conf 98567677666752578799999999998638987999841--57524878873415058985488-------7834666
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55421000000122321112542
Q gi|254781102|r 229 AKMRLFEELLPKESPAIIYADDA 251 (497)
Q Consensus 229 aK~~If~~~~~~~~~~ViN~Dd~ 251 (497)
-|+.|++ . ....|+|-+|-
T Consensus 176 iKaG~mE-i---aDI~VVNKaD~ 194 (333)
T TIGR00750 176 IKAGVME-I---ADIYVVNKADG 194 (333)
T ss_pred HHHHHHE-E---EEEEEEECCCC
T ss_conf 6544302-3---24878816887
No 49
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.50 E-value=0.52 Score=25.80 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 8775202676763111234433455210001355786023000---37-8689999741211002344403540266546
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd 395 (497)
+.+..+|+|.+.+... ..++..-.|+. ..-.|+||- +| ++.-+...-..+.....-.+++|+.+....
T Consensus 261 ~Ya~ilgvp~~v~~~~-~~l~~al~~~~------~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~- 332 (412)
T PRK05703 261 TYAKIMGIPVKVAYDP-KELAKALEQLA------NCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKY- 332 (412)
T ss_pred HHHHHCCCEEEEECCH-HHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCH-
T ss_conf 9999719737984799-99999998715------899799968988978999999999998624887189997598998-
Q ss_pred CCHHHHHHHHHHHHC----CEEEEC-CCCCCCCCHHHHHHHHH-HCCC
Q ss_conf 004689999998619----899990-88798989899999998-3479
Q gi|254781102|r 396 QGKRPIMGKIALDLA----DIAIVT-DDNPRSEDPEKIRAEII-HGIP 437 (497)
Q Consensus 396 ~~kr~~mg~~a~~~a----d~vi~t-~d~~r~e~~~~I~~~i~-~g~~ 437 (497)
..|-+++..|. +.+||| -|-.+ .+-.|.+-+. .+++
T Consensus 333 ----~dl~~i~~~f~~~~~~~lI~TKlDEt~--~~G~il~~~~~~~lp 374 (412)
T PRK05703 333 ----RDLKDIVKHFSRLPLDGLILTKLDETS--SLGSILSLLIESGLP 374 (412)
T ss_pred ----HHHHHHHHHHCCCCCCEEEEEEECCCC--CCCHHHHHHHHHCCC
T ss_conf ----999999998467999879997112899--862999999998879
No 50
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.40 E-value=0.042 Score=32.86 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=49.0
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH--------------HHHC--CCC-CCEEEEEEEE--
Q ss_conf 98598899984732233343223479709997998999999999--------------9827--620-0224565430--
Q gi|254781102|r 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--------------RLYG--KHP-ENILAVTGTS-- 124 (497)
Q Consensus 64 ~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~--------------~~~~--~~~-~~vIgITGTn-- 124 (497)
+.+-+...+++.+... ...++.++.+..|.+...-|..|.+ .+.+ ... .-||||.||.
T Consensus 17 ~~~~~~~~lt~~e~~~---~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvav 93 (283)
T COG1072 17 LRASTPLTLTEEELKR---LRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAV 93 (283)
T ss_pred HHHCCCCCCCHHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 5405864267899988---6067889779999999999999999999889988999999834668888879996057665
Q ss_pred CCCEEHHHHHHHHHHCCCC
Q ss_conf 6520001233333210232
Q gi|254781102|r 125 GKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 125 GKTTt~~~l~~iL~~~g~~ 143 (497)
||.||+..+..+|+..+..
T Consensus 94 GKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 94 GKSTTARILQALLSRWPES 112 (283)
T ss_pred CHHHHHHHHHHHHHHCCCC
T ss_conf 5778999999999638898
No 51
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=93.10 E-value=0.18 Score=28.73 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHHHHCCC-CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCC----CCC-CCCC----
Q ss_conf 99999982762-0022456543--0652000123333321023222223454----43323554----457-6753----
Q gi|254781102|r 103 SLFASRLYGKH-PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPTS----TISSFAQD----NRL-TTPS---- 166 (497)
Q Consensus 103 ~~la~~~~~~~-~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~~----~~~~~~~~----~~~-TtP~---- 166 (497)
.++-+..+... ...+|||||+ .||+|..+-+...|...|.+++.+.... +-+...++ ..+ +.|.
T Consensus 36 ~~ll~~l~~~~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiR 115 (325)
T PRK09435 36 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIR 115 (325)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999863017982599742799986889999999999967985899997899998886101038888761479984884
Q ss_pred -----------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -----------12211111110112233333566766655543104321-211123215455432110112234554210
Q gi|254781102|r 167 -----------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 (497)
Q Consensus 167 -----------~~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i~~-diaviTNI~~dHLd~~gs~e~y~~aK~~If 234 (497)
+-.....+.-+...|.|+.++|+- |.+|..++-... |..++.- .| |.=+.+...|+.|+
T Consensus 116 s~~srg~lgg~~~~~~~~~~~~~a~g~d~i~iETv--GvGQ~e~~v~~~~d~~~~~~-~p------~~GD~~Q~~K~GIm 186 (325)
T PRK09435 116 PSPSSGTLGGVARKTRETMLLCEAAGFDVILVETV--GVGQSETAVAGMVDFFLLLQ-LP------GAGDELQGIKKGIM 186 (325)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC--CCCHHHHHHHHHCCEEEEEE-CC------CCCCHHHHHHHHHH
T ss_conf 06778886773354999999999779998999706--77714889987426688883-58------87608899886577
Q ss_pred HHCCCCCCCCCCCCCC
Q ss_conf 0000012232111254
Q gi|254781102|r 235 EELLPKESPAIIYADD 250 (497)
Q Consensus 235 ~~~~~~~~~~ViN~Dd 250 (497)
+- ....|+|..|
T Consensus 187 Ei----aDi~vVNKaD 198 (325)
T PRK09435 187 EL----ADLIVINKAD 198 (325)
T ss_pred HH----CCEEEEECCC
T ss_conf 50----4268997767
No 52
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.26 E-value=0.86 Score=24.36 Aligned_cols=123 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC---CCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCC
Q ss_conf 877520267676311123443345521000135578602300---0378689999741211002-344403540266546
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD---YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD 395 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD---yahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd 395 (497)
..+..+|+|.+.+... ..++..=.|+. +.-.|+|| .++.-..+..-+..+.... .-+.++|+.+...
T Consensus 227 tYa~IlgvPv~vv~~~-~eL~~aL~~l~------~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~-- 297 (404)
T PRK06995 227 IYGKILGVPVHAVKDA-ADLRLALAELR------NKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSH-- 297 (404)
T ss_pred HHHHHCCCEEEEECCH-HHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC--
T ss_conf 9998759559995999-99999999708------99999980999897688899999999735788528999779899--
Q ss_pred CCHHHHHHHHHHHHC----CEEEEC-CCCCCCCCHHHHHHHHH-HCCC-----------CEEEECCHHHHHHHHHHHC
Q ss_conf 004689999998619----899990-88798989899999998-3479-----------8099789899999999965
Q gi|254781102|r 396 QGKRPIMGKIALDLA----DIAIVT-DDNPRSEDPEKIRAEII-HGIP-----------GFIEKGNRIEAIRTAIEML 456 (497)
Q Consensus 396 ~~kr~~mg~~a~~~a----d~vi~t-~d~~r~e~~~~I~~~i~-~g~~-----------~~~~~~dr~eAi~~A~~~a 456 (497)
...|-+++..|. +.+||| -|-.. .+-.+++-+. .+.+ .-+++.|.+.=|..|+..-
T Consensus 298 ---~~dl~~i~~~f~~~~~~~~I~TKLDEt~--~~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~ 370 (404)
T PRK06995 298 ---GDTLNEVVQAYRGPGLAGCILTKLDEAA--SLGGALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAP 370 (404)
T ss_pred ---HHHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCC
T ss_conf ---9999999998446999839983040679--723999999997898599818995842121089899999986264
No 53
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.99 E-value=0.076 Score=31.20 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHCCCCH
Q ss_conf 10577888775202676
Q gi|254781102|r 313 YNALVAAGLCIAIGIDS 329 (497)
Q Consensus 313 ~NalaAia~a~~lGi~~ 329 (497)
.|++.++.++..+|+-.
T Consensus 426 l~l~lg~vlGl~lg~~~ 442 (726)
T PRK09841 426 LNVVLGFILGLFISVGA 442 (726)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 54
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.75 E-value=0.99 Score=23.99 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEE------
Q ss_conf 99974121100234440354026654600468999999861989999088798989899999998347980997------
Q gi|254781102|r 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK------ 442 (497)
Q Consensus 369 ~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~------ 442 (497)
++...+...+-.++|.-++++=||.-..++..+ .+|..++|.=+=..-+|-+.-|++++++..+.-..++-+
T Consensus 568 ~r~~~~~f~~~~GrrprilvaKmGqDGHdrGak--~iA~~f~D~GfdV~~~~lfqTPeE~a~~A~e~dvhvigisslaa~ 645 (715)
T PRK09426 568 AQELVEAFAEAEGRRPRILVAKMGQDGHDRGAK--VIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAG 645 (715)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH--HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999999999971999769996279872100278--999888757606861675589999999999759999998233454
Q ss_pred -CCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf -8989999999996589889999446
Q gi|254781102|r 443 -GNRIEAIRTAIEMLNKQDVLVVAGK 467 (497)
Q Consensus 443 -~dr~eAi~~A~~~a~~gDvili~Gk 467 (497)
.....++..+++....+|+.+++|.
T Consensus 646 h~tLVP~l~~~Lk~~g~~di~VvvGG 671 (715)
T PRK09426 646 HKTLVPALIEALKKLGREDIMVVVGG 671 (715)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 42127999999996499886799838
No 55
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.63 E-value=0.49 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 4432112221001012234332221105778887752026767631112344
Q gi|254781102|r 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 (497)
Q Consensus 288 ~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f 339 (497)
...|....-...|.+....||.-| |+.+|..+|+|.+-|.++=.-+
T Consensus 464 s~~FD~~tl~PtYrl~~G~pG~S~------A~~IA~rlGlp~~ii~~A~~~l 509 (780)
T PRK00409 464 SVEFDEETLRPTYRLLIGIPGRSN------AFEIAKRLGLPPNIIEEAKKVY 509 (780)
T ss_pred EEEECCCCCCCCEEEECCCCCCCH------HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 888740237860687059997636------9999999297999999999885
No 56
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=91.52 E-value=0.69 Score=24.98 Aligned_cols=87 Identities=22% Similarity=0.150 Sum_probs=61.0
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 88732033556555743002453023146898899803887676888999998598899984732233343223479709
Q gi|254781102|r 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 (497)
Q Consensus 13 ~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~ 92 (497)
++...+.....-..+..|+++..=. +-.+++++|. ++.+|.++...-.|.+++++..... ....+.+.
T Consensus 8 ~la~~~~~e~~g~~~~~i~~va~l~-~a~~~~i~f~------~~~ky~~~l~~s~Agaviv~~~~~~-----~~~~~~~~ 75 (338)
T COG1044 8 ELAQQLGAELRGDGDRVITGVAPLD-EAQPGDISFL------ANPKYRKELKTSRAGAVIVSAKDAA-----FAPAKKNA 75 (338)
T ss_pred HHHHHHCCEEECCCCEEEECCCHHH-HCCCCCCEEE------CCHHHHHHCCCCCCCEEEECHHHHH-----CCCCCCEE
T ss_conf 9997518388257842562013244-4484451562------2733343112376758995589972-----06668708
Q ss_pred EEECCHHHHHHHHHHHHHC
Q ss_conf 9979989999999999827
Q gi|254781102|r 93 LVVDNTRKFLSLFASRLYG 111 (497)
Q Consensus 93 i~V~d~~~aL~~la~~~~~ 111 (497)
++++||..++++++..|+.
T Consensus 76 Lv~~~P~~~fA~~~~~f~~ 94 (338)
T COG1044 76 LVVKDPYLAFAKVAQLFYR 94 (338)
T ss_pred EEECCCHHHHHHHHHHHCC
T ss_conf 9948806789999988514
No 57
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=91.51 E-value=0.079 Score=31.10 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=27.8
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
++|-|| |=.|||||+.=|...|...|+++..+
T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvli 36 (272)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (272)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 58999817889773589899999999619828999
No 58
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=91.34 E-value=0.078 Score=31.12 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.6
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.+||+|. |-.|||||+-.+++.|...|+++-.+
T Consensus 104 ~~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvI 139 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 808999788876569999999999999779988999
No 59
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.97 E-value=0.082 Score=30.99 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=24.6
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 24565430--6520001233333210232222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
|||||||. ||||++.-+.+|+...+.++..
T Consensus 1 IIaVtGsSGAGtsTv~r~f~~IF~re~v~a~v 32 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAV 32 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98993388884787999999987205885289
No 60
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.80 E-value=1.2 Score=23.38 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CC-CHHHHHHHHHHHHHCCC-CCCCEEEECCCCC
Q ss_conf 8775202676763111234433455210001355786023000---37-86899997412110023-4440354026654
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AH-TSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy---ah-NP~s~~~aL~~l~~~~~-~r~i~V~G~~Gdr 394 (497)
..|..+|+|...+.. ...+...-.+++ +--.|+||- +| |..-+...-+.+..... -.+++|+.+...
T Consensus 227 tya~il~vp~~v~~~-~~dl~~~l~~~~------~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~- 298 (388)
T PRK12723 227 TYGDIMGIPVKAIES-FKDLKEEITQSK------DFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK- 298 (388)
T ss_pred HHHHHHCCCEEEECC-HHHHHHHHHHHC------CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-
T ss_conf 999997880698578-899999999724------999999958998856899999999999741898459999879899-
Q ss_pred CCCHHHHHHHHHHHHC----CEEEEC
Q ss_conf 6004689999998619----899990
Q gi|254781102|r 395 DQGKRPIMGKIALDLA----DIAIVT 416 (497)
Q Consensus 395 d~~kr~~mg~~a~~~a----d~vi~t 416 (497)
...|-++..+|. +.+|+|
T Consensus 299 ----~~d~~~i~~~f~~~~~~~~I~T 320 (388)
T PRK12723 299 ----TSDIKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred ----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf ----9999999998427999849998
No 61
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.80 E-value=1.2 Score=23.38 Aligned_cols=78 Identities=27% Similarity=0.519 Sum_probs=49.3
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHC------CEEEECCCCCCCCCHHHH--HHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 344403540266546004689999998619------899990887989898999--999983479809978989999999
Q gi|254781102|r 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA------DIAIVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIRTA 452 (497)
Q Consensus 381 ~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~a------d~vi~t~d~~r~e~~~~I--~~~i~~g~~~~~~~~dr~eAi~~A 452 (497)
.+|+++++|-.| .||+--++|+|+.++ ...++|.|+-|-=-.+++ .++++ |++ +.++.+. +.++.|
T Consensus 193 ~~~vi~lvGPTG---VGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il-~vp-~~vv~~~-~~l~~~ 266 (282)
T TIGR03499 193 QGGVIALVGPTG---VGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKIL-GVP-VKVARDP-KELAKA 266 (282)
T ss_pred CCCEEEEECCCC---CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCE-EEEECCH-HHHHHH
T ss_conf 672799977888---7578899999999999738996799980777678999999999995-974-8993999-999999
Q ss_pred HHHCCCCCEEEE
Q ss_conf 996589889999
Q gi|254781102|r 453 IEMLNKQDVLVV 464 (497)
Q Consensus 453 ~~~a~~gDvili 464 (497)
++..+.-|+|||
T Consensus 267 l~~~~~~d~IlI 278 (282)
T TIGR03499 267 LERLRDKDLILI 278 (282)
T ss_pred HHHCCCCCEEEE
T ss_conf 986579899998
No 62
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=90.75 E-value=1.2 Score=23.36 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=18.8
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 7860230003786899997412110023444035402
Q gi|254781102|r 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 (497)
Q Consensus 354 ~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~ 390 (497)
+|+-++.-..=.|.+++.-|+++. +.|| +.+||-
T Consensus 229 eG~Dv~lEmSGaP~A~~~gL~~~~--~gGR-~~~Lgl 262 (341)
T TIGR00692 229 EGVDVVLEMSGAPKALEQGLDAVA--NGGR-VALLGL 262 (341)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC--CCCE-EEECCC
T ss_conf 964799864899179999999850--6880-898136
No 63
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.63 E-value=0.14 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565430--65200012333332102322222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|||+|-. ||||.+..|...|...|..+..+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vi 33 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVI 33 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989989897789999999999984648853999
No 64
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.18 E-value=0.12 Score=30.01 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=29.2
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+||+|. |-.|||||+--+++.|...|+++-.+
T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlI 156 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 28999788877659999999999999779988999
No 65
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=90.11 E-value=1.1 Score=23.74 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=62.4
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 55743002453023146898899803887676888999998598899984732233343223479709997998999999
Q gi|254781102|r 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 (497)
Q Consensus 25 ~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~ 104 (497)
..|+.|++++.= .+-++.+|=|+ +..+|.+++.+..|.|+++++....+ ......+.|+|+||..++++
T Consensus 15 ~g~~~i~~v~~l-~~A~~~~itF~------~n~K~~~~l~~~~AgAv~~~~~~~~~----~~~~~~~~L~v~~P~l~fA~ 83 (336)
T TIGR01853 15 EGDIKISGVAPL-EKAKAEHITFL------ANPKYLKELKSSKAGAVIVSADDQSK----LVPKKCAALVVKDPYLAFAK 83 (336)
T ss_pred CCCEEEEEECCC-CCCCCCCEEEE------CCHHHHHHHHCCCCEEEEEEHHHCCC----CCCCCCCEEEECCCHHHHHH
T ss_conf 676688530763-35880226653------38047876515774079971566178----55232505781781799999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999982762002
Q gi|254781102|r 105 FASRLYGKHPEN 116 (497)
Q Consensus 105 la~~~~~~~~~~ 116 (497)
++++|+..++..
T Consensus 84 ~~~~F~~~~~~~ 95 (336)
T TIGR01853 84 VAELFDPPPKRL 95 (336)
T ss_pred HHHHHCCCCCCH
T ss_conf 998608876501
No 66
>PRK11519 tyrosine kinase; Provisional
Probab=89.85 E-value=0.22 Score=28.24 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=14.3
Q ss_pred CCCCCEEEECC-CCCCCCHHHH---HHHHHHHHCCEEEECC
Q ss_conf 34440354026-6546004689---9999986198999908
Q gi|254781102|r 381 SGRIIVVFGCG-GDRDQGKRPI---MGKIALDLADIAIVTD 417 (497)
Q Consensus 381 ~~r~i~V~G~~-Gdrd~~kr~~---mg~~a~~~ad~vi~t~ 417 (497)
++|+|+|-++. |+ ||.-. ++..++..-.+|++.+
T Consensus 525 ~~~vi~vTS~~pgE---GKSt~a~nLA~~~A~~G~rvLLID 562 (720)
T PRK11519 525 QNNVLMMTGVSPSI---GKTFVCANLAAVISQTNKRVLLID 562 (720)
T ss_pred CCCEEEEEECCCCC---CHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 87679997089999---789999999999983799199993
No 67
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.09 E-value=0.23 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.5
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565430--652000123333321023222223
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
||||||+- ||||-.+-+...|...|++++.+.
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVla 34 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLA 34 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9762589978789999999999997898379999
No 68
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=89.03 E-value=0.15 Score=29.34 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=30.1
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 24565430652000123333321023222223454
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~ 151 (497)
||+++|.=||||+-+.|+.-|+..|+++....|+.
T Consensus 1 VIs~VGaGGKTS~m~~LA~e~~~~G~~VlvTTTT~ 35 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 98998898799999999999987699099988966
No 69
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=0.23 Score=28.15 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=60.7
Q ss_pred EEEECCCCCC-H-HHHHHHHHHCCCEEEEECCCC--CCCCCC-CCCCCCCCEEEECCHHHHHHHHH-HHHHCCCCCCEEE
Q ss_conf 9980388767-6-888999998598899984732--233343-22347970999799899999999-9982762002245
Q gi|254781102|r 46 FVAIVGNKED-G-HLFIPQAIAQGAEAIVVSSAY--SLQDFS-ATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILA 119 (497)
Q Consensus 46 Fval~G~~~d-G-h~fi~~A~~~GA~~~i~~~~~--~~~~~~-~~~~~~~p~i~V~d~~~aL~~la-~~~~~~~~~~vIg 119 (497)
=+|.+|-..+ . ..|+.+|+++|...+=.=+.. +.+++. .....++.++-|..+..-|..++ -..+ +-+.+++.
T Consensus 74 gia~~gG~~~~~~~~~i~eAl~~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~-k~~a~~V~ 152 (339)
T COG3367 74 GIAPPGGVLPESWREYIVEALEAGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMAR-KVDAKVVL 152 (339)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCC-CCCCCEEE
T ss_conf 96158885757889999999983731665557776118689999987197567622674203343047511-46776899
Q ss_pred EEEE---ECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 6543---065200012333332102322222345
Q gi|254781102|r 120 VTGT---SGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 120 ITGT---nGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
+-|| .||-||+..+...+++-|++++.++|-
T Consensus 153 vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTg 186 (339)
T COG3367 153 VVGTDCAVGKRTTALELREAAREEGIKAGFVATG 186 (339)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 9335632104388999999999709863157607
No 70
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=88.25 E-value=0.092 Score=30.67 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCCCCEEE--EECCCCCCH--HHHHHHHHHCCCEEEEE--CCCCCCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHCC
Q ss_conf 46898899--803887676--88899999859889998--4732233343-22347970999799899999999998276
Q gi|254781102|r 40 IQAGWIFV--AIVGNKEDG--HLFIPQAIAQGAEAIVV--SSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGK 112 (497)
Q Consensus 40 v~~g~lFv--al~G~~~dG--h~fi~~A~~~GA~~~i~--~~~~~~~~~~-~~~~~~~p~i~V~d~~~aL~~la~~~~~~ 112 (497)
..+..+.+ |-.|-...- ...+.+|+++|-..+=- +.-.+.+.+. .....++.++=|..+..-+. ++...-..
T Consensus 32 ~g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIvsGLH~~L~ddp~l~~~A~~~g~~i~DvR~p~~~~~-~~~g~~~~ 110 (302)
T pfam07755 32 AGADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVVSGLHEFLSDDPELAAAAKKHGVQIIDVRKPPVDLP-VATGKARE 110 (302)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCC-CCCCCCCC
T ss_conf 69998999741688848989999999999828926233577751489899999986997999158999886-57684014
Q ss_pred CCCCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 20022456543---06520001233333210232222234
Q gi|254781102|r 113 HPENILAVTGT---SGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 113 ~~~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
.+.++|.+-|| .||-||+..+.+.|++.|.++..++|
T Consensus 111 ~~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaT 150 (302)
T pfam07755 111 VKAKRVLTVGTDCAVGKMTTALELERALRERGLNAAFVAT 150 (302)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7987899960573340789999999999977998479972
No 71
>PRK06696 uridine kinase; Validated
Probab=87.94 E-value=0.59 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHCCCC-CC-EEEEEE--EECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 989999999999827620-02-245654--3065200012333332102322222
Q gi|254781102|r 97 NTRKFLSLFASRLYGKHP-EN-ILAVTG--TSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 97 d~~~aL~~la~~~~~~~~-~~-vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+..+.+.+||..+....+ .+ +|||.| -.||||.+.-|+..|.+.|..+..+
T Consensus 6 ~r~~~~~~~~~~i~~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v 60 (227)
T PRK06696 6 NRKQVVKEIANHILTLNLTRPLRVAIDGITASGKTTFANELAEEIKKRGRPVIRA 60 (227)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 2878999999999835999868999778998787999999999997469948997
No 72
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.80 E-value=2 Score=21.97 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC---CCCCCCCHHHHHH
Q ss_conf 7860230003786899997412110023444035402665460046899999986198999908---8798989899999
Q gi|254781102|r 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD---DNPRSEDPEKIRA 430 (497)
Q Consensus 354 ~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~---d~~r~e~~~~I~~ 430 (497)
.|.-+++|..-+|.+++.+++.++ +.|| ++++|.......-.-+. -.+..+.. .+..+ +....++.+...+
T Consensus 244 ~G~Dvvie~~G~~~~~~~al~~~~--~gG~-iv~~G~~~~~~~~~~~~-~~~~~~~~--~i~~s~~~~~~~~~~~~~~~~ 317 (358)
T TIGR03451 244 FGADVVIDAVGRPETYKQAFYARD--LAGT-VVLVGVPTPDMTLELPL-LDVFGRGG--ALKSSWYGDCLPERDFPMLVD 317 (358)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHC--CCCE-EEEEECCCCCCCCCCCH-HHHHHCCC--EEEEEEECCCCHHHHHHHHHH
T ss_conf 887499999999899999999762--7969-99992258997322269-99973775--899988648760889999999
Q ss_pred HHHHCCC---CEE-EECCHHHHHHHHHHHCCCCCEE
Q ss_conf 9983479---809-9789899999999965898899
Q gi|254781102|r 431 EIIHGIP---GFI-EKGNRIEAIRTAIEMLNKQDVL 462 (497)
Q Consensus 431 ~i~~g~~---~~~-~~~dr~eAi~~A~~~a~~gDvi 462 (497)
.+.+|.- ..+ ...+. +-++.|++..+.|+++
T Consensus 318 li~~g~i~~~~lIt~~~~L-e~~~eAfe~~~~g~~~ 352 (358)
T TIGR03451 318 LYLQGRLPLDAFVTERIGL-DDVEEAFDKMHAGDVL 352 (358)
T ss_pred HHHCCCCCCCCCEEEEEEH-HHHHHHHHHHHCCCCE
T ss_conf 9984979984138999879-9999999998779972
No 73
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.23 E-value=2.2 Score=21.76 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 976787866789887320335565557430024530231468988998
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA 48 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFva 48 (497)
||+|.-+..+--+.+...... -+.|-.| ..+|+|..|==.||
T Consensus 1 MkIKRF~A~dMReAL~~VRee--LG~DAVI----LSNRkv~~GVEIvA 42 (557)
T PRK12727 1 MKIKRFVAPDMRTAFRMVREE--HGPDAVI----LSNRRTAEGIEIVA 42 (557)
T ss_pred CCCCEECCCCHHHHHHHHHHH--HCCCEEE----EECCCCCCCEEEEE
T ss_conf 972367687999999999998--7899799----72882699769999
No 74
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=87.15 E-value=0.24 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.3
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 2245654--30652000123333321023222223
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|+|+| =.|||||+-=++..|.+.|+++..+-
T Consensus 2 r~Iai~GKGGVGKTTtavNLA~aLa~~GkkVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 58999799857789999999999998799499986
No 75
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=86.66 E-value=1.9 Score=22.15 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=22.3
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|-|| .|||||..=++.-+...|++++.+.
T Consensus 7 vGptG-vGKTTTiaKLAa~~~~~~~~V~lit 36 (196)
T pfam00448 7 VGLQG-SGKTTTIAKLAAYLKKQGKKVLLVA 36 (196)
T ss_pred ECCCC-CCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999-9889999999999997799289997
No 76
>COG2403 Predicted GTPase [General function prediction only]
Probab=86.38 E-value=0.37 Score=26.76 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456543---065200012333332102322222
Q gi|254781102|r 114 PENILAVTGT---SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
..++|+|||| .|||+++.+++++|++.|++...+
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vV 161 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVV 161 (449)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4855999972366556788899999998669823799
No 77
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.62 E-value=0.22 Score=28.25 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=23.2
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565430652000123333321023222223
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|.|| .|||||..=++.-+...|++++.+.
T Consensus 80 lvG~~G-~GKTTT~AKLA~~~~~~~~kV~lia 110 (270)
T PRK06731 80 LIGPTG-VGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 988898-9889999999999986799089998
No 78
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=85.51 E-value=0.45 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 0224565430--652000123333321023222223
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+|++|+|.. ||||..+=+...|++.|++++.+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 728999962799734289999999975793799998
No 79
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=85.12 E-value=0.32 Score=27.13 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=38.4
Q ss_pred EEEEE--ECCCEEHHHHHHHHHHC-CCCCCC----CCCCCCC---------CCCCCC------CCCC-------CCC--H
Q ss_conf 56543--06520001233333210-232222----2345443---------323554------4576-------753--1
Q gi|254781102|r 119 AVTGT--SGKSSVASFVQQICQRS-GLSSFQ----IGPTSTI---------SSFAQD------NRLT-------TPS--P 167 (497)
Q Consensus 119 gITGT--nGKTTt~~~l~~iL~~~-g~~~~~----~g~~~~~---------~~~~~~------~~~T-------tP~--~ 167 (497)
-|||= .|||| |+.|+|+.+ |++-+. +|.+|.. .+...+ -.+| .-| -
T Consensus 8 vvTGFLGaGKTT---LiRhlL~NA~GkRiAvIVNEFGd~GiDG~iLk~Cgi~~C~Eeeaq~~i~ELaNGCiCCTVaDdF~ 84 (349)
T TIGR02475 8 VVTGFLGAGKTT---LIRHLLENAEGKRIAVIVNEFGDLGIDGEILKACGIEACSEEEAQVNIVELANGCICCTVADDFI 84 (349)
T ss_pred EEECCCCCCHHH---HHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHCCCEEECCCCCEECCCHHHHH
T ss_conf 873756761589---99999717478769999852556063679996435678880120001488088973103201256
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 22111111101122333335667666555
Q gi|254781102|r 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 (497)
Q Consensus 168 ~~l~~~l~~~~~~g~~~~vlEvSS~gl~~ 196 (497)
.++.++|+ +....|+.++|+| ||.+
T Consensus 85 Ptm~~LL~--R~~~~DHIlIETS--GLAL 109 (349)
T TIGR02475 85 PTMTKLLA--RRERPDHILIETS--GLAL 109 (349)
T ss_pred HHHHHHHH--CCCCCCEEEEECC--HHHC
T ss_conf 79999970--3889866887442--1002
No 80
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=85.10 E-value=0.34 Score=26.97 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=24.8
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHHCCCC
Q ss_conf 00224565430--6520001233333210232
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~ 143 (497)
...|+|+=|=| |||||-.||..+|+-.+=.
T Consensus 20 ~G~vfGfLGPNGAGKTTti~mLtTll~P~sG~ 51 (343)
T TIGR01188 20 EGEVFGFLGPNGAGKTTTIRMLTTLLKPTSGT 51 (343)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCE
T ss_conf 62489976879985133563410255799876
No 81
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=84.93 E-value=0.34 Score=27.02 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.3
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 24565430--6520001233333210
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
+|||+|.. ||||++..+..+|...
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~ 26 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRW 26 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98978899877999999999986002
No 82
>PRK11670 putative ATPase; Provisional
Probab=84.75 E-value=0.36 Score=26.81 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=29.0
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+++|+|+ |-.|||||+--|+..|.+.|++++.+
T Consensus 107 ~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgll 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 889999858998889999999999999669937898
No 83
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=84.41 E-value=1.2 Score=23.48 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 9998276200224565430------6520001233333210232222
Q gi|254781102|r 106 ASRLYGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 106 a~~~~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
......++..|+|-||+.| |||||+-=|.+.|...|+++..
T Consensus 54 ~~~~~~~~~gklILVTaitPTP~GEGKTTttIGL~~aL~~lgkk~~~ 100 (587)
T PRK13507 54 LSRLKDRPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVGG 100 (587)
T ss_pred HHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 88740489963999984688888898621056299999860882589
No 84
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=84.21 E-value=0.35 Score=26.91 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=23.6
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 24565430--652000123333321023222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
+|||+|-. ||||.+..|...|...|.++.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~ 31 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAA 31 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 9899899857199999999999660587764
No 85
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.80 E-value=0.34 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.7
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 24565430--6520001233333210
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
||||||+. ||||.+..+.++|...
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~ifg~~ 26 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD 26 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 98997888786999999999985848
No 86
>PRK03839 putative kinase; Provisional
Probab=83.61 E-value=0.38 Score=26.65 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.3
Q ss_pred EEEEEEE--ECCCEEHHHHHHHH
Q ss_conf 2456543--06520001233333
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQIC 137 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL 137 (497)
+|+|||| .||||.+..+++-|
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~l 24 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89997899999899999999976
No 87
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=83.56 E-value=1.4 Score=23.05 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=29.7
Q ss_pred ECCHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 7998999999999982762-0022456543065200012333332102322222
Q gi|254781102|r 95 VDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 95 V~d~~~aL~~la~~~~~~~-~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.-|--+|..+|...+.... ...+.|+||| |||=| ++.+....++++-.+
T Consensus 14 aGDQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT---~AnVI~~~~rPtLV~ 63 (663)
T COG0556 14 AGDQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFT---MANVIAKVQRPTLVL 63 (663)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEEECCC-CCHHH---HHHHHHHHCCCEEEE
T ss_conf 998679999999888638602588620368-83107---999999868971998
No 88
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.45 E-value=3.2 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=23.3
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565430652000123333321023222223
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|.|| .|||||..=+++-+...|++++.+.
T Consensus 5 lvGptG-vGKTTTiaKLA~~~~~~~~kV~lit 35 (173)
T cd03115 5 LVGLQG-VGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 989999-9889999999999997699289997
No 89
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=82.43 E-value=0.44 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=18.5
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 2456543--0652000123333321023222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
.|+|||| .||||++..|+ ..|+++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH----HHCCCEE
T ss_conf 37993799986687999999----8298466
No 90
>TIGR01648 hnRNP-R-Q hnRNP-R, Q splicing factor family; InterPro: IPR006535 Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein) . These proteins contain three RNA recognition domains and a somewhat variable C-terminal domain. .
Probab=82.21 E-value=0.65 Score=25.15 Aligned_cols=175 Identities=12% Similarity=0.149 Sum_probs=86.9
Q ss_pred CCCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2111232154554321------1011223455421000000122321112542000122210235653222223333220
Q gi|254781102|r 205 IAGSFTNLGRDHIDYH------QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278 (497)
Q Consensus 205 diaviTNI~~dHLd~~------gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~~~~~~ 278 (497)
..+|..++...-| |- |+.|+|.++=.+.-++++ .+.|+ ..-.++.+|++..++-|..+.+...
T Consensus 134 lLGVC~SVdNcRL-FvGgIPK~KkreeILeE~~KVTEGvv---dVIvY-------~saaDK~KNRGFaFvEYEsHraAA~ 202 (611)
T TIGR01648 134 LLGVCISVDNCRL-FVGGIPKTKKREEILEEISKVTEGVV---DVIVY-------ASAADKKKNRGFAFVEYESHRAAAM 202 (611)
T ss_pred EEEEEEEEECCEE-EECCCCCCCCHHHHHHHHHHHCCCEE---EEEEE-------CCCCCCCCCCCEEEEEEHHHHHHHH
T ss_conf 1337878705711-44674888851226767533013325---66870-------7836566676314751020589999
Q ss_pred ----CCEECCCCCCCCCCCCCCCCEEEC------CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf ----000001454443211222100101------2234332221105778887752026767631112344334552100
Q gi|254781102|r 279 ----LKKVCAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 (497)
Q Consensus 279 ----~~~~~~~~~~~~~~i~~~~~~~~~------~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~ 348 (497)
+-.-.....|..+++.+-..+.++ ++.++ -+.|++.. ++.|-|.+.+++|+ ||-+|+
T Consensus 203 ARRkLmpGri~lWGh~iaVdWAeP~~evDedvM~~VKiL---yVRNL~~~--------ttEE~ieKsF~~f~--PG~vER 269 (611)
T TIGR01648 203 ARRKLMPGRIQLWGHVIAVDWAEPEVEVDEDVMAKVKIL---YVRNLMLE--------TTEEIIEKSFSEFK--PGAVER 269 (611)
T ss_pred HHHHCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCEEE---EEECCHHH--------HHHHHHHHHCCCCC--CCCEEE
T ss_conf 986308971887035178612588315872201610278---88332134--------21433320125679--972454
Q ss_pred CCCCCCCCEEEECCCC-CHHHHHHHHHHHHHCCC-----CCCCEEEECCCCCCCCH--------HHHHHHHHHHHC
Q ss_conf 0135578602300037-86899997412110023-----44403540266546004--------689999998619
Q gi|254781102|r 349 VGTNSRGGRIYVDYAH-TSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGK--------RPIMGKIALDLA 410 (497)
Q Consensus 349 i~~~~~~~~viiDyah-NP~s~~~aL~~l~~~~~-----~r~i~V~G~~Gdrd~~k--------r~~mg~~a~~~a 410 (497)
|++ |-|||. |-.+=+.|+++++++.+ ..+=++|.=+-|||.-- |..+.+.+.+|.
T Consensus 270 VKK-------irDYAFVHF~~RedAV~AM~~lNGkeleGs~iEvtLAKPvDK~~Y~RY~~~~~G~g~~~qa~~qy~ 338 (611)
T TIGR01648 270 VKK-------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKESYVRYTKAAKGRGKELQAARQYS 338 (611)
T ss_pred EEE-------ECCEEEEEECCHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 311-------012136401686789999986089533583068985689872212330014678860135664306
No 91
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=82.17 E-value=0.46 Score=26.14 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=27.0
Q ss_pred CEEEE---EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 22456---543065200012333332102322222
Q gi|254781102|r 116 NILAV---TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
|+|+| -|=.|||||+-=++..|...|+++-.+
T Consensus 2 kiIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlI 36 (244)
T pfam06564 2 AVLALQGVRGGVGTTSLTAALGWALQQLGESVLVI 36 (244)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 29999669998619999999999999779958999
No 92
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=82.04 E-value=1 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=26.9
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 45654306520001233333210232222234
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
||.=| .|||||+.=+|-=...-|+++++++-
T Consensus 127 VGLQG-aGKTTtctKLA~YYk~rGfK~~lvCA 157 (453)
T TIGR01425 127 VGLQG-AGKTTTCTKLAYYYKRRGFKPALVCA 157 (453)
T ss_pred EECCC-CCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 62148-87156687877776326643256517
No 93
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=81.85 E-value=1 Score=23.92 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 00224565430--6520001233333210232222
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
...||-+.|=| |||||-.=|++.|.+.|+++-.
T Consensus 81 kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~l 115 (284)
T TIGR00064 81 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLL 115 (284)
T ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 97799998440886010288999999874990899
No 94
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=81.83 E-value=3.2 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCCHH
Q ss_conf 5778887752026767
Q gi|254781102|r 315 ALVAAGLCIAIGIDSA 330 (497)
Q Consensus 315 alaAia~a~~lGi~~~ 330 (497)
+.+|+|++..+|+|+.
T Consensus 115 vTsA~Aa~a~aGiPlT 130 (242)
T TIGR01469 115 VTSAIAAAAYAGIPLT 130 (242)
T ss_pred CCHHHHHHHHCCCCCC
T ss_conf 1167789985589954
No 95
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=81.53 E-value=0.72 Score=24.86 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=28.7
Q ss_pred CCCEEEE----EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456----543065200012333332102322222
Q gi|254781102|r 114 PENILAV----TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgI----TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+.+||.| +|-.|||.++.+++..|.+.|++++.+
T Consensus 48 ~vpVI~VGNitvGGtGKTP~v~~la~~l~~~g~~~~Il 85 (334)
T PRK00652 48 PVPVISVGNLTVGGNGKTPVVIWLAEQLQARGVKVGVV 85 (334)
T ss_pred CCCEEEEECEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99899990888788777999999999999769936787
No 96
>PRK10818 cell division inhibitor MinD; Provisional
Probab=81.47 E-value=0.59 Score=25.43 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.++|+|+ |=.|||||+-=++..|.+.|+++..+
T Consensus 2 ~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlli 37 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 749999789998418999999999999779968999
No 97
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=81.34 E-value=0.81 Score=24.55 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=28.5
Q ss_pred CCCEEEE----EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456----543065200012333332102322222
Q gi|254781102|r 114 PENILAV----TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgI----TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+-+||.| .|-.|||-+..+++..|.+.|++++.+
T Consensus 50 ~vPVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~Ii 87 (332)
T PRK00313 50 PVPVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVV 87 (332)
T ss_pred CCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99899987873588777799999999999779965898
No 98
>CHL00175 minD septum-site determining protein; Validated
Probab=81.33 E-value=0.61 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0224565---43065200012333332102322222
Q gi|254781102|r 115 ENILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 115 ~~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.++|+|+ |=.|||||+--++..|.+.|+++..+
T Consensus 13 ~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlli 48 (279)
T CHL00175 13 TRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 48 (279)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 869999748998448999999999999789988999
No 99
>KOG0780 consensus
Probab=80.92 E-value=1.8 Score=22.36 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=24.3
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|.-| .|||||+.=++.-++..|+++.++.
T Consensus 107 VGLqG-~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780 107 VGLQG-SGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred EECCC-CCCCEEHHHHHHHHHHCCCCEEEEE
T ss_conf 83057-8863008999999984687245776
No 100
>COG4240 Predicted kinase [General function prediction only]
Probab=80.89 E-value=1.4 Score=22.90 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=37.5
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHHCC-CCCCC
Q ss_conf 99799899999999998276200224565430--65200012333332102-32222
Q gi|254781102|r 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQRSG-LSSFQ 146 (497)
Q Consensus 93 i~V~d~~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~~g-~~~~~ 146 (497)
+.++-....+.+++.++...-..-++||.|+- ||||++..|..+|...| .+++.
T Consensus 28 ~~~dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~ 84 (300)
T COG4240 28 LAQDLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTAT 84 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999987788986445442127963998526888765359999999999736530688
No 101
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=80.53 E-value=0.67 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.8
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 2245654--30652000123333321023222223
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|+|+| =.|||||+-=++..|.+.|+++..+-
T Consensus 1 r~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlliD 35 (269)
T pfam00142 1 RKIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIVG 35 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 95899899976889999999999998799099984
No 102
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=80.35 E-value=0.18 Score=28.79 Aligned_cols=95 Identities=27% Similarity=0.247 Sum_probs=49.8
Q ss_pred CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 22456543065200012333332102322222345443323554457675312211111110112233333566766655
Q gi|254781102|r 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 (497)
Q Consensus 116 ~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl~ 195 (497)
++|.|+|+|||+++..+....+...+.+ .+|++|+ +..||--. .+.+++. .....+.++..|.- .+.
T Consensus 65 ~vi~V~~~~~~~~~~a~~~y~~ps~~l~--vigvTGT-------NgKTt~t~-~~~~~~~-~~g~~~~~~gT~g~--~~~ 131 (475)
T COG0769 65 PVIVVTGTNGKLTTLALAFYGLPSGKLK--VIGVTGT-------NGKTTTTS-LLAQILK-KLGKKTALIGTEGD--ELS 131 (475)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCE--EEEECCC-------CCHHHHHH-HHHHHHH-HCCCCEEEEEEEEE--ECC
T ss_conf 7799868537778889985238657851--8986387-------85799999-9999988-62982589997766--326
Q ss_pred HHHHC---CCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 54310---43212111232154554321101
Q gi|254781102|r 196 QHRLD---GIKLIAGSFTNLGRDHIDYHQTQ 223 (497)
Q Consensus 196 ~~rl~---~i~~diaviTNI~~dHLd~~gs~ 223 (497)
.+.+. .+.|+.-.++|+..+++|..+++
T Consensus 132 ~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 132 PGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 8863456678921789999999999738809
No 103
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=79.73 E-value=1 Score=23.95 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCCEEEE----EEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 20022456----5430652000123333321023222223
Q gi|254781102|r 113 HPENILAV----TGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 113 ~~~~vIgI----TGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++-+||.| .|-.|||-++.+++..|.+.|++++.++
T Consensus 33 ~~vpVI~VGNit~GGtGKTP~v~~l~~~l~~~g~~~~ilS 72 (318)
T pfam02606 33 LPVPVIVVGNITVGGTGKTPLVIALAELLRARGLRPGVLS 72 (318)
T ss_pred CCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 8999999989845887858999999999997699447832
No 104
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.61 E-value=0.76 Score=24.73 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 7998999999844
Q gi|254781102|r 482 MSVDCDIIREILG 494 (497)
Q Consensus 482 ~~~d~~~~~~~l~ 494 (497)
.++-+.-+.++||
T Consensus 387 ~~~~~~l~~R~l~ 399 (407)
T PRK12726 387 RPKSRWLAERFVG 399 (407)
T ss_pred CCCHHHHHHHHHC
T ss_conf 2898999999846
No 105
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=79.09 E-value=4.6 Score=19.64 Aligned_cols=96 Identities=21% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCCCCCC-CCEEEEECCCCCCHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCCCCCEEEE---CCHHHHHHHHHHHHH
Q ss_conf 0231468-98899803887676888999998598-899984732233343223479709997---998999999999982
Q gi|254781102|r 36 DSRHIQA-GWIFVAIVGNKEDGHLFIPQAIAQGA-EAIVVSSAYSLQDFSATIRSNTPILVV---DNTRKFLSLFASRLY 110 (497)
Q Consensus 36 DSr~v~~-g~lFval~G~~~dGh~fi~~A~~~GA-~~~i~~~~~~~~~~~~~~~~~~p~i~V---~d~~~aL~~la~~~~ 110 (497)
.++.++| ..+.||=-|-..-|-+++...+.+.+ .=+++.+.|..+.. +..+.-+|.| -+|...|..+..+..
T Consensus 27 ~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~~y~lP~~---v~~~tLVIavSySGnTeETL~a~~~A~~ 103 (328)
T PRK08674 27 IEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVRDYFLPAF---VDRKTLVIAVSYSGNTEETLSAVEQAKK 103 (328)
T ss_pred CHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1101476572999957564899999999984479986798558879986---5888579998289997799999999997
Q ss_pred CCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 762002245654306520001233333210232
Q gi|254781102|r 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 111 ~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
+ ..++|+|| |.|| +..+.++.+..
T Consensus 104 r--ga~vi~It-sGG~------L~~~a~~~~~~ 127 (328)
T PRK08674 104 R--GAKIIAIT-SGGK------LAEMAKEKGVP 127 (328)
T ss_pred C--CCCEEEEE-CCCC------HHHHHHHCCCC
T ss_conf 5--99589994-8970------67899877998
No 106
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=78.98 E-value=0.71 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=25.9
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 2456543--0652000123333321023222223
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|.++|. .||||++..++..|.+.|+++..+-
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~vD 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9898589977689999999999998899699986
No 107
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=78.83 E-value=2.1 Score=21.87 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=30.7
Q ss_pred HCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 276200224565430------6520001233333210232222
Q gi|254781102|r 110 YGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 110 ~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
..++..|+|-||+.| |||||+==|++-|...|+++..
T Consensus 49 ~~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~ 91 (577)
T PRK13506 49 ADQPKGKLVIVTAVTPTPLGEGKTVTTIGLTQGLNALGQKVCA 91 (577)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 2389964999985689889898411098799999871984589
No 108
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=78.38 E-value=2.1 Score=21.82 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=9.5
Q ss_pred CEEEEEEEECCCEEHHHHHH
Q ss_conf 22456543065200012333
Q gi|254781102|r 116 NILAVTGTSGKSSVASFVQQ 135 (497)
Q Consensus 116 ~vIgITGTnGKTTt~~~l~~ 135 (497)
+||||-| -|==++.+|+..
T Consensus 21 ~ViGvGG-gGnN~v~rm~~~ 39 (365)
T TIGR00065 21 KVIGVGG-GGNNAVNRMVEE 39 (365)
T ss_pred EEEEECC-CCHHHHHHHHHH
T ss_conf 9998558-823589999870
No 109
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=78.15 E-value=0.75 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=25.6
Q ss_pred EEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565---43065200012333332102322222
Q gi|254781102|r 117 ILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
||+|. |-.||||++.-++..|.+.|+++..+
T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~~g~~vllv 34 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899739998709999999999999779918999
No 110
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=78.05 E-value=1.1 Score=23.72 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=24.5
Q ss_pred CCCEEEEEEE---ECCCEEHHHHHHHHHHC-CCCCCC
Q ss_conf 0022456543---06520001233333210-232222
Q gi|254781102|r 114 PENILAVTGT---SGKSSVASFVQQICQRS-GLSSFQ 146 (497)
Q Consensus 114 ~~~vIgITGT---nGKTTt~~~l~~iL~~~-g~~~~~ 146 (497)
+.++|.||.+ .||||++.-++..|... |+++-.
T Consensus 34 ~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLL 70 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL 70 (207)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8809999789999988999999999999724985999
No 111
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=77.76 E-value=1 Score=23.96 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=28.3
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2245654--306520001233333210232222234
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
+.|+|.| =.|||||+-=++..|.+.|+++..++.
T Consensus 1 ~~iaiyGKGGVGKTTts~NLaaaLA~~G~rVl~iD~ 36 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGC 36 (212)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 959998898356877899999999986996999903
No 112
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=77.60 E-value=2.6 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 8276200224565430------6520001233333210232222
Q gi|254781102|r 109 LYGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 109 ~~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
...++..|+|-||+-| |||||+==|.+.|...|+++..
T Consensus 32 ~~~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~~gk~~~~ 75 (524)
T cd00477 32 LEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIA 75 (524)
T ss_pred HCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 23489955999984688888888531099899999873663148
No 113
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.43 E-value=1.6 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=14.1
Q ss_pred EEEECCCCCCCEEECCCEECCCCHHHHHHHHHH
Q ss_conf 999446886635844978867998999999844
Q gi|254781102|r 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 (497)
Q Consensus 462 ili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~ 494 (497)
|+..|-|.. + ....||+-.+.|+..|+
T Consensus 314 I~fiGvGE~-~-----~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 314 IKFIGVGEG-Y-----DDLRPFDAEWFVDALLG 340 (340)
T ss_pred EEEEECCCC-H-----HHCCCCCHHHHHHHHHC
T ss_conf 799857888-4-----43200699999998609
No 114
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=77.07 E-value=1.3 Score=23.21 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=28.5
Q ss_pred CCCEEEE----EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456----543065200012333332102322222
Q gi|254781102|r 114 PENILAV----TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgI----TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+-+||.| .|-.|||-+..+++..|.+.|++++.+
T Consensus 55 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~G~k~~Il 92 (339)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (339)
T ss_pred CCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999986887688757799999999999769955998
No 115
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=76.95 E-value=1 Score=23.81 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=27.8
Q ss_pred CEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 224565430---6520001233333210232222234
Q gi|254781102|r 116 NILAVTGTS---GKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
+.+=||||. |||.++..+++.|...|+++..+-.
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 3699982799964999999999999968970598775
No 116
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=76.64 E-value=0.86 Score=24.37 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=19.5
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 22456543--06520001233333210232222
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
.+||+||+ .||||++.+++. .|.++..
T Consensus 3 ~iIglTG~igsGKStva~~~~~----~G~~vid 31 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE----LGFPVID 31 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCEEEE
T ss_conf 4999957887788999999997----7993998
No 117
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=76.61 E-value=5.4 Score=19.18 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=35.5
Q ss_pred CCCCCCCCEEEEEC--CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 23146898899803--88767688899999859889998473223334322347970999799
Q gi|254781102|r 37 SRHIQAGWIFVAIV--GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN 97 (497)
Q Consensus 37 Sr~v~~g~lFval~--G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d 97 (497)
...+.++|+++|.- |++..=-.-+++|.++||..+.....-...+ .+...+.|++.++.
T Consensus 38 P~~v~~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~itsGG~L~~--~a~~~~~p~v~iP~ 98 (119)
T cd05017 38 PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLE--MAREHGVPVIIIPK 98 (119)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH--HHHHCCCCEEECCC
T ss_conf 87558787899992897968999999999985990999849955999--99887999898799
No 118
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=76.51 E-value=1.1 Score=23.73 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=28.2
Q ss_pred EEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 24565--43065200012333332102322222345
Q gi|254781102|r 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 117 vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
.|+|- |-.|||||+.=++..|...|+++-++|..
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~~G~kVl~IgcD 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 799977996578778999999999879959997789
No 119
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=76.32 E-value=5.5 Score=19.13 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=57.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 8887752026767631112344334552100-013557860230003786899997412110023444035402665460
Q gi|254781102|r 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 (497)
Q Consensus 318 Aia~a~~lGi~~~~i~~~L~~f~~~~gR~E~-i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~ 396 (497)
-+|+|.+.|++++ +..|.-+..|-=. ....++|...+.|+ |+.-++.+.++.|..+-.+....|-|-
T Consensus 282 L~AIA~eaGi~l~-----l~dfd~is~~~P~l~~l~P~G~~~~~d~-~~aGGvp~vmk~L~~lL~~d~~TVtG~------ 349 (577)
T PRK06131 282 LIAIAGRAGVELD-----LDDWDRIGRDVPVLVNLQPSGEYLMEDF-YYAGGLPAVLRELGELLHLDALTVNGK------ 349 (577)
T ss_pred HHHHHHHHCCCCC-----HHHHHHHHCCCCEEEEECCCCCCHHHHH-HHCCCHHHHHHHHHHHCCCCCCCCCCC------
T ss_conf 9999997389999-----9999987067877877336764029888-873799999999997506888752798------
Q ss_pred CHHHHHHHHHHH---HCCEEEECCCCCCCCCH-----------H--H-----HHHHHHHCCCCEEEECCHHHHHHHHHH-
Q ss_conf 046899999986---19899990887989898-----------9--9-----999998347980997898999999999-
Q gi|254781102|r 397 GKRPIMGKIALD---LADIAIVTDDNPRSEDP-----------E--K-----IRAEIIHGIPGFIEKGNRIEAIRTAIE- 454 (497)
Q Consensus 397 ~kr~~mg~~a~~---~ad~vi~t~d~~r~e~~-----------~--~-----I~~~i~~g~~~~~~~~dr~eAi~~A~~- 454 (497)
-+++.+.+ .-+.||-+-+||-.++. + . +-.+++.---.+.+..+.++|+ .|+.
T Consensus 350 ----tl~e~l~~~~~~~~~VIr~~~~P~~~~Ggl~iL~GNLAP~GaVvK~sav~~~~~~~~G~A~VF~~ee~~~-~ai~~ 424 (577)
T PRK06131 350 ----TLGENLAGAEIYNDDVIRPLDNPLKPEGGIAVLRGNLAPDGAVIKPSAASPELLKHEGRAVVFEDYEDYK-ARIDD 424 (577)
T ss_pred ----CHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHH-HHHHC
T ss_conf ----6999970687789774666565656778889822665788526752014731127874257757999999-99848
Q ss_pred H---CCCCCEEEEECCCC
Q ss_conf 6---58988999944688
Q gi|254781102|r 455 M---LNKQDVLVVAGKGH 469 (497)
Q Consensus 455 ~---a~~gDvili~GkG~ 469 (497)
. -++||||+|-+-|.
T Consensus 425 ~~l~i~~gdVvViR~eGP 442 (577)
T PRK06131 425 PDLDVDEDSVLVLRNAGP 442 (577)
T ss_pred CCCCCCCCEEEEEECCCC
T ss_conf 776787725999956689
No 120
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=76.31 E-value=2 Score=22.01 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=29.8
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 22456543--065200012333332102322222345
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
.+|+|.|- -|||||+.=++..|...|+++-++|..
T Consensus 3 ~~iaiyGKGGIGKSTttaNlsaALA~~GkkV~~IgcD 39 (269)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAALAKLGKKVLQIGCD 39 (269)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 3999978995478889999999999769938998189
No 121
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=76.31 E-value=5.5 Score=19.13 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 97678786678988732033556555743002453023146898899803887676888999998598899984732
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~ 77 (497)
||+.+|..... +.+. .. ...|-.-+|+..++|+ .-.-+.+|+.- ...-+++|+++||-++|+..+.
T Consensus 1 Mk~~El~~~l~-~~l~----~~-~~~D~d~~GLqV~~~~-eV~kI~~alD~----t~~vi~eAi~~~aDliitHHpl 66 (247)
T PRK10799 1 MKNTELEQLIN-EKLN----SA-AISDYAPNGLQVEGKE-TVQKIVTGVTA----SQALLDEAVRLQADAVIVHHGY 66 (247)
T ss_pred CCHHHHHHHHH-HHCC----HH-HCCCCCCCEEEECCCC-CCCEEEEEECC----CHHHHHHHHHCCCCEEEECCCC
T ss_conf 95899999998-5679----96-6058897645877987-51189999569----8999999998599999986740
No 122
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=76.27 E-value=0.8 Score=24.58 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 24565430--652000123333321
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+|||+|.. ||||++..|...|..
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9898899988599999999998099
No 123
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=76.03 E-value=1.4 Score=23.08 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCEEEEEEEECC--CEEHHHHHHHHHHCCCCCCC
Q ss_conf 022456543065--20001233333210232222
Q gi|254781102|r 115 ENILAVTGTSGK--SSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 115 ~~vIgITGTnGK--TTt~~~l~~iL~~~g~~~~~ 146 (497)
.++|+||||.|- |||+.-...++.....+...
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~ 38 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAE 38 (289)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 8668884478887544899999999851764866
No 124
>PRK05480 uridine kinase; Provisional
Probab=75.67 E-value=0.96 Score=24.05 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=20.7
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 224565430--6520001233333210
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
-+|||+|.. ||||.+..|...|...
T Consensus 7 ~iIgIaG~SgSGKTT~a~~L~~~l~~~ 33 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDE 33 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 899998999778999999999980868
No 125
>PRK01184 hypothetical protein; Provisional
Probab=75.57 E-value=1 Score=23.84 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=21.0
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
.+||+||.. ||||++. +|++.|.++..+|
T Consensus 2 ~iIGlTG~iGSGKstva~----i~~e~G~~vi~~~ 32 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSK----IARELGIPVVVMG 32 (183)
T ss_pred EEEEEECCCCCCHHHHHH----HHHHCCCEEEECC
T ss_conf 399996899887899999----9997799399860
No 126
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=75.33 E-value=2.1 Score=21.88 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHHHH-HHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHH---HHHHHHHHCCCCCEEEE
Q ss_conf 89999998-6198999908879898989999999834798099789899---99999996589889999
Q gi|254781102|r 400 PIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE---AIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 400 ~~mg~~a~-~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~e---Ai~~A~~~a~~gDvili 464 (497)
|.+-+..+ .=.|.++|+..|.-+ +..|........+|.+ -+..+++.++-.++++.
T Consensus 279 P~~~~~i~~~r~DL~ll~~p~tew---------~~Dg~R~l~~~~~R~~F~~~l~~~L~~~~~~f~~v~ 338 (346)
T TIGR01526 279 PFLKKTIAEYRFDLTLLLKPNTEW---------VDDGLRSLGSEESRKEFQELLERALAEFGLSFVVVE 338 (346)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCE---------ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 278877632788479972799873---------428852077432278999999999997099469983
No 127
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=75.09 E-value=3.1 Score=20.75 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=30.6
Q ss_pred HHCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 8276200224565430------6520001233333210232222
Q gi|254781102|r 109 LYGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 109 ~~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
...++..|+|-||+-+ |||||+==|.+-|...|+++..
T Consensus 48 ~~~~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~ 91 (556)
T PRK13505 48 LKDKKDGKLILVTAINPTPAGEGKTTVTVGLGDALNKIGKKTVI 91 (556)
T ss_pred HCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 22489963999984588888888630179899999871874379
No 128
>PRK11890 phosphate acetyltransferase; Provisional
Probab=74.43 E-value=6.2 Score=18.82 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCC---CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHH
Q ss_conf 688899999859-88999847322333432234---79709997998999999999982762002245654306520001
Q gi|254781102|r 56 GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 (497)
Q Consensus 56 Gh~fi~~A~~~G-A~~~i~~~~~~~~~~~~~~~---~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~ 131 (497)
--+-+.+|.+.| |.-+++-++........... .+..++-.++...+-.......+.. ... .-+.|+ ..|..
T Consensus 35 vL~Aa~~a~~eGia~PILvG~~~~I~~~a~~~gldl~~~eIid~~~~~~~a~~av~lv~~g-~Ad-~lmkG~---~~t~~ 109 (312)
T PRK11890 35 SLRGAVEAAQLGLITPILVGPRARIRAVAEECGLDLSDYQIVDAPHSHAAAAKAVELVRAG-EAE-ALMKGS---LHTDE 109 (312)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCC-CCC-EEEECC---CCCHH
T ss_conf 9999999998698379998999999999998599978886878998289999999983378-886-898678---76256
Q ss_pred HHHHHHH
Q ss_conf 2333332
Q gi|254781102|r 132 FVQQICQ 138 (497)
Q Consensus 132 ~l~~iL~ 138 (497)
++..++.
T Consensus 110 ~l~~vl~ 116 (312)
T PRK11890 110 LMSAVVA 116 (312)
T ss_pred HHHHHHH
T ss_conf 7666541
No 129
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=74.31 E-value=1.3 Score=23.29 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.6
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.||+|. |-.|||||+--+++-|...|+++-.+
T Consensus 107 ~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLlI 141 (388)
T PRK13705 107 PVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 28999527888559999999999999779908999
No 130
>PRK10037 cell division protein; Provisional
Probab=74.24 E-value=0.96 Score=24.06 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 2456543065200012333332102322222
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+.++.|-.||||++.-+++.|...|+++-.+
T Consensus 6 l~s~kGGVGkTTltAnLA~aL~~~g~~VlaI 36 (250)
T PRK10037 6 LQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9607888768999999999999779918999
No 131
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.18 E-value=1.4 Score=23.01 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCEEEEEEE---ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456543---065200012333332102322222
Q gi|254781102|r 114 PENILAVTGT---SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgITGT---nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
..++|+||.+ .||+||+..++..|.+.|++++.+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6618999758998756899999999999639938999
No 132
>PRK10083 putative dehydrogenase; Provisional
Probab=74.17 E-value=6.2 Score=18.78 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=46.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 78602300037868999974121100234440354026654600468999999861989999088798989899999998
Q gi|254781102|r 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 (497)
Q Consensus 354 ~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~ 433 (497)
.+..+++|..-+|..+..+++.++ +.|+ ++++|..++...- .+..+..+ ..-++.+. ...++.....+.+.
T Consensus 227 ~~~dvvid~~g~~~~~~~a~~~~~--~gG~-iv~~G~~~~~~~i---~~~~~~~k--~l~i~gs~-~~~~~~~~~~~li~ 297 (339)
T PRK10083 227 VKPTLIFDAACHPSILEEAVTLAS--PAAR-IVLMGFSSEPSEI---VQQGITGK--ELTIYSSR-LNANKFPVVIDWLA 297 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHH--CCEE-EEEEECCCCCCCC---CHHHHHHC--EEEEEECC-CCHHHHHHHHHHHH
T ss_conf 996199966668899999999851--8809-9999258998753---68887426--78999922-68889999999998
Q ss_pred HCCCC---EEE-ECCHHHHHHHHHHHCC
Q ss_conf 34798---099-7898999999999658
Q gi|254781102|r 434 HGIPG---FIE-KGNRIEAIRTAIEMLN 457 (497)
Q Consensus 434 ~g~~~---~~~-~~dr~eAi~~A~~~a~ 457 (497)
+|.-+ .+. ..+. +-+..|+++++
T Consensus 298 ~g~i~~~~lIt~~f~L-~~~~~A~~~~~ 324 (339)
T PRK10083 298 KGLIDPEKLITHTFDF-QHVADAIELFE 324 (339)
T ss_pred CCCCCHHHEEEEEEEH-HHHHHHHHHHH
T ss_conf 5999915708999898-99999999986
No 133
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=74.05 E-value=1.4 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=27.2
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+||||+|.. ||||-.+=+-..|...|++++.+-
T Consensus 3 Pii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~IK 37 (170)
T PRK10751 3 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77999946999999999999999998798499994
No 134
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=74.04 E-value=3.4 Score=20.47 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=30.3
Q ss_pred HCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 276200224565430------6520001233333210232222
Q gi|254781102|r 110 YGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 110 ~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
-.++..|+|-||+.| |||||+-=|.+-|...|+++..
T Consensus 49 ~~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~ 91 (555)
T pfam01268 49 KDRPDGKLILVTAITPTPAGEGKTTTTIGLGQALNRLGKKAIA 91 (555)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCEEE
T ss_conf 2489853999984578888888630236599999862874368
No 135
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=73.42 E-value=1.2 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=27.2
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565---430652000123333321023222223
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|+|+ |=.|||||+-=++..|.+.|+++..+-
T Consensus 2 kiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlID 37 (246)
T TIGR03371 2 KVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAID 37 (246)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 399997599985499999999999996899789997
No 136
>PRK06761 hypothetical protein; Provisional
Probab=73.41 E-value=1.2 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.2
Q ss_pred EEEEEECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 5654306520001233333210232222
Q gi|254781102|r 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 119 gITGTnGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
||-| .|||||++|++..|++.|..+-.
T Consensus 9 GlPG-sGKSTta~~l~d~L~~~g~~v~~ 35 (281)
T PRK06761 9 GLPG-FGKSTTAHLLNDKLSQLKIEVEL 35 (281)
T ss_pred CCCC-CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 6899-98014999999999866985389
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=73.40 E-value=2.6 Score=21.25 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 98999999999982762002245654306520001233333210232222
Q gi|254781102|r 97 NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 97 d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
.++.+-..||+.+....+-.+||=|| .||||.-.+++..+...|.++..
T Consensus 82 ~~ws~QR~WakR~~rg~SFaiiAPTG-vGKTTfg~~~sl~~a~kgkr~yi 130 (1187)
T COG1110 82 RPWSAQRVWAKRLVRGKSFAIIAPTG-VGKTTFGLLMSLYLAKKGKRVYI 130 (1187)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 86078899999987378448982788-76547999999998755874999
No 138
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=73.31 E-value=0.89 Score=24.26 Aligned_cols=31 Identities=32% Similarity=0.343 Sum_probs=26.3
Q ss_pred EEEE---EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 2456---543065200012333332102322222
Q gi|254781102|r 117 ILAV---TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
||+| -|-.|||||+--++..|...|+++..+
T Consensus 2 IIaVaNqKGGvGKTTtavnLA~aLA~~G~rVllI 35 (261)
T pfam09140 2 VIVVGNEKGGSGKSTTAVHVAVALLYLGARVATI 35 (261)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7999717898729999999999999889978999
No 139
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=72.93 E-value=1.4 Score=22.95 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=25.9
Q ss_pred EEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4565430---6520001233333210232222234
Q gi|254781102|r 118 LAVTGTS---GKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 118 IgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
|=||||. |||+++..+.+.|++.|.+++.+-.
T Consensus 2 ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KP 36 (223)
T PRK00090 2 LFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKP 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECE
T ss_conf 89986899976999999999999978994899751
No 140
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=72.89 E-value=1 Score=23.96 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=27.1
Q ss_pred EEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 245654--3065200012333332102322222345
Q gi|254781102|r 117 ILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 117 vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
+|=+|| =.||||++.-++.-|...|+++..+.+.
T Consensus 2 ~i~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstD 37 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTD 37 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899968985548999999999999689949999589
No 141
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=72.86 E-value=6.7 Score=18.58 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=7.9
Q ss_pred EEEEEEEECCCEEHHHHH
Q ss_conf 245654306520001233
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQ 134 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~ 134 (497)
++|=.|+ |||+.-.+++
T Consensus 74 Ifg~~g~-GKt~Ll~~i~ 90 (326)
T cd01136 74 IFAGSGV-GKSTLLGMIA 90 (326)
T ss_pred EECCCCC-CCCHHHHHHH
T ss_conf 4369999-8466787686
No 142
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=72.76 E-value=1 Score=23.90 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=27.9
Q ss_pred CEEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 224565--4306520001233333210232222234
Q gi|254781102|r 116 NILAVT--GTSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
+.|+|- |=.|||||+-=|+..|...|+++..++.
T Consensus 2 ~~ia~yGKGGVGKTTTavNLAaALA~~GkkVLlID~ 37 (292)
T PRK13230 2 KQIAFYGKGGIGKSTTVCNLAAALSKSGKKVIVVGC 37 (292)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 679991799857898999999999987995999776
No 143
>PRK08356 hypothetical protein; Provisional
Probab=72.53 E-value=1.3 Score=23.10 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=21.5
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
=+|||||-+ ||+|++.++ +..|+...++|
T Consensus 6 mIIgitG~~gSGK~tva~~l----~~~G~~~~s~s 36 (195)
T PRK08356 6 MIVGIAGKIAAGKTTVAKFL----EELGFCRISCS 36 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH----HHCCCEEEECC
T ss_conf 69998589988789999999----98699288422
No 144
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=72.17 E-value=2.4 Score=21.49 Aligned_cols=39 Identities=10% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 899999999998276200224565430--652000123333321
Q gi|254781102|r 98 TRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 98 ~~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
..+|+..+. |.--...|.|+-|-| ||||+-.||+.+|.-
T Consensus 14 ~v~AvrdVS---F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 14 KVQAVRDVS---FEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred HHHHHHHEE---EEECCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 876666525---78506649998768988712379999983258
No 145
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=72.16 E-value=7 Score=18.48 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHC----CCEEEEECCCCCCCCCCCCCCCCCC----EEEECCHHHHHHHHH
Q ss_conf 988998038876768889999985----9889998473223334322347970----999799899999999
Q gi|254781102|r 43 GWIFVAIVGNKEDGHLFIPQAIAQ----GAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFA 106 (497)
Q Consensus 43 g~lFval~G~~~dGh~fi~~A~~~----GA~~~i~~~~~~~~~~~~~~~~~~p----~i~V~d~~~aL~~la 106 (497)
-+-|+ +-++.-.-++|.++++. ++..+|+=.-.+. +...+...+| ++-+.|....|..+-
T Consensus 44 TC~FI--~~A~~ES~~~i~e~~d~K~~y~~KviV~GCL~~~--y~e~L~~~~P~v~~~~G~~d~~~i~~~i~ 111 (475)
T TIGR01125 44 TCGFI--EDAKQESIDTIGELLDAKDEYGKKVIVTGCLVER--YKEELKEEIPEVKAITGTEDVEEILNAIE 111 (475)
T ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC--CHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 44230--4789999999999987586529759996556654--34665420752367525888899999997
No 146
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=72.15 E-value=0.91 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.0
Q ss_pred EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 543065200012333332102322222
Q gi|254781102|r 121 TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 121 TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
=|-.||||++-.++..|.+.|+++..+
T Consensus 7 KGGVGKTT~a~nLA~~la~~G~rVlli 33 (212)
T pfam01656 7 KGGVGKTTLAANLARALAKRGYRVLLI 33 (212)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998069999999999999789978998
No 147
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=71.87 E-value=1.7 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.2
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 224565430--652000123333321023222223
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|+|.|-. ||||..+=+-..|...|++++.+-
T Consensus 2 kii~ivG~snSGKTTLi~kli~~l~~~G~~V~~iK 36 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIK 36 (159)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 29999967999999999999999997798598997
No 148
>KOG1324 consensus
Probab=71.74 E-value=3.6 Score=20.30 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=40.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCC-CHHHHHHHHHHHHHCCC----CCCCEEEECCCCCCCCHHHHHHHHH-HHHC
Q ss_conf 3443345521000135578602300037-86899997412110023----4440354026654600468999999-8619
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAH-TSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIA-LDLA 410 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~viiDyah-NP~s~~~aL~~l~~~~~----~r~i~V~G~~Gdrd~~kr~~mg~~a-~~~a 410 (497)
.+++|++||+++|-...-+..+-.+-++ --.++++||+.|.+-+. .++ -|+| |. + ...++. ...+
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~v-fvIG--G~-~-----vy~~al~~p~~ 131 (190)
T KOG1324 61 EKFRPLPGRINVVLSRSLKEDFAPTENVFLSSSLESALDLLEEPPSSNSVEMV-FVIG--GS-E-----VYSEALNSPRC 131 (190)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCEEEE-EEEC--CH-H-----HHHHHHCCCCC
T ss_conf 34588998557999446675667756789831399999851388533521479-9986--88-9-----99998738775
Q ss_pred CEEEECC
Q ss_conf 8999908
Q gi|254781102|r 411 DIAIVTD 417 (497)
Q Consensus 411 d~vi~t~ 417 (497)
|.+.+|.
T Consensus 132 ~~i~~T~ 138 (190)
T KOG1324 132 DAIHITE 138 (190)
T ss_pred CEEEEEE
T ss_conf 5289887
No 149
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=71.66 E-value=4.3 Score=19.84 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCCCC-CEEEEEEEE--CCCEEHHHHHHHHHHCCC
Q ss_conf 76200-224565430--652000123333321023
Q gi|254781102|r 111 GKHPE-NILAVTGTS--GKSSVASFVQQICQRSGL 142 (497)
Q Consensus 111 ~~~~~-~vIgITGTn--GKTTt~~~l~~iL~~~g~ 142 (497)
..+.+ .+|||+|.- ||||.++.+...|...+.
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~ 63 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGP 63 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 59997189999899988999999999999862379
No 150
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.53 E-value=7.2 Score=18.38 Aligned_cols=96 Identities=10% Similarity=0.138 Sum_probs=46.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 02300037868999974121100234440354026654600468999999861989999088798989899999998347
Q gi|254781102|r 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 (497)
Q Consensus 357 ~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~ 436 (497)
.+++|..-++..++.+++.++ +.|+ ++++|...+...- .+...... ..-++.+-....++.....+.+.+|-
T Consensus 243 ~~v~e~~G~~~~~~~a~~~~~--~gG~-iv~vG~~~~~~~~---~~~~l~~~--~~~i~Gs~~~~~~~~~~~~~li~~gk 314 (349)
T TIGR03201 243 WKIFECSGSKPGQESALSLLS--HGGT-LVVVGYTMAKTEY---RLSNLMAF--HARALGNWGCPPDRYPAALDLVLDGK 314 (349)
T ss_pred CEEEEECCCHHHHHHHHHHCC--CCCE-EEEECCCCCCCCC---CHHHHHHC--CEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 369982488899999999735--8979-9997505998755---48998736--67999856899789999999998698
Q ss_pred ---CCEEEECCHHHHHHHHHHHCCCCCE
Q ss_conf ---9809978989999999996589889
Q gi|254781102|r 437 ---PGFIEKGNRIEAIRTAIEMLNKQDV 461 (497)
Q Consensus 437 ---~~~~~~~dr~eAi~~A~~~a~~gDv 461 (497)
...+.... -+-++.|++.++.|++
T Consensus 315 i~~~~~i~~~p-L~~~~eAf~~~~~gk~ 341 (349)
T TIGR03201 315 IQLGPFVERRP-LDQIEHVFAAAHHHKL 341 (349)
T ss_pred CCCCCCEEEEE-HHHHHHHHHHHHCCCC
T ss_conf 89856489831-9999999999977999
No 151
>PRK10416 cell division protein FtsY; Provisional
Probab=71.26 E-value=2 Score=21.96 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=9.7
Q ss_pred EECCCCHHHHHHHHHH
Q ss_conf 8867998999999844
Q gi|254781102|r 479 EKKMSVDCDIIREILG 494 (497)
Q Consensus 479 ~~~~~~d~~~~~~~l~ 494 (497)
...+|+-.+.++-+|.
T Consensus 481 DL~~F~~~~Fv~aLf~ 496 (499)
T PRK10416 481 DLRPFKADDFIEALFA 496 (499)
T ss_pred HCCCCCHHHHHHHHHC
T ss_conf 0667798999999844
No 152
>PRK09422 alcohol dehydrogenase; Provisional
Probab=71.24 E-value=7.3 Score=18.34 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 0378689999741211002344403540266
Q gi|254781102|r 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 (497)
Q Consensus 362 yahNP~s~~~aL~~l~~~~~~r~i~V~G~~G 392 (497)
.+-++.++..+++.++ +.|++ +.+|...
T Consensus 237 ~~~~~~~~~~~~~~l~--~gG~~-v~vG~~~ 264 (338)
T PRK09422 237 TAVAKAAFNQAVDAVR--AGGRV-VAVGLPP 264 (338)
T ss_pred ECCCHHHHHHHHHHHH--CCCEE-EEECCCC
T ss_conf 6787899999999811--69999-9987789
No 153
>PHA02518 ParA-like protein; Provisional
Probab=71.12 E-value=1.4 Score=22.99 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=25.8
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
|+|+|. |=.|||||+--++..|...|+++..+
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98999808999749999999999999789948999
No 154
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=71.06 E-value=1.7 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=25.7
Q ss_pred HCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 276200224565430--652000123333321
Q gi|254781102|r 110 YGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 110 ~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+.-++.++.|.-|-| |||||-+||-.+|+.
T Consensus 23 f~v~~G~i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred EEECCCEEEEEECCCCCCCCCHHHHHHCCCCC
T ss_conf 66548717876658889732339998645786
No 155
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.02 E-value=3.5 Score=20.40 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=25.3
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430652000123333321023222223
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|.-| .|||||+.=++.-|...|+++.+++
T Consensus 106 vGLQG-sGKTTt~~KLA~~lkk~~~kvllVa 135 (451)
T COG0541 106 VGLQG-SGKTTTAGKLAKYLKKKGKKVLLVA 135 (451)
T ss_pred EECCC-CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 81567-9748689999999997499458985
No 156
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=70.84 E-value=4 Score=20.01 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-----CCCCHH-----HHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 877520267676311123443345521000135578602300-----037868-----9999741211002344403540
Q gi|254781102|r 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-----YAHTSN-----SLEMILKNIRTITSGRIIVVFG 389 (497)
Q Consensus 320 a~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD-----yahNP~-----s~~~aL~~l~~~~~~r~i~V~G 389 (497)
-++..+|+++|+|..++.+-+++.-=.|.|+..+..|..++| |...-+ +++.+|..|. ...|.|+.+-
T Consensus 118 Elae~lg~~~EEiv~A~Es~~~~~sly~tvh~dDGdPi~LlD~i~d~~~~~~~~~~ki~Lke~i~~Ld--~rer~ii~LR 195 (231)
T TIGR02885 118 ELAEALGVSPEEIVMALESARSLQSLYDTVHEDDGDPILLLDQIADKGSEDSDLLEKIALKEAISKLD--ERERQIIMLR 195 (231)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCHHCCEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC--CCCCEEEEEE
T ss_conf 99887587887866442025761011001141794644676652125771368999899999986125--2267897741
No 157
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=70.63 E-value=1.2 Score=23.42 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=14.6
Q ss_pred EEEECCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 099789899999999965898899994468
Q gi|254781102|r 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 (497)
Q Consensus 439 ~~~~~dr~eAi~~A~~~a~~gDvili~GkG 468 (497)
+++|.=|-.||+.| |-|+++-||
T Consensus 653 VIiIAHRLstvR~c-------dRI~vl~kG 675 (703)
T TIGR01846 653 VIIIAHRLSTVRAC-------DRIIVLEKG 675 (703)
T ss_pred EEEEHHHHHHHHHC-------CCEEEECCC
T ss_conf 79746156888605-------851761377
No 158
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=70.26 E-value=2.9 Score=20.93 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCHHHHHHHCC
Q ss_conf 23211125420001222102
Q gi|254781102|r 242 SPAIIYADDAYSKEVMKRAH 261 (497)
Q Consensus 242 ~~~ViN~Dd~~~~~l~~~~~ 261 (497)
...|.|.--+..+++.+..+
T Consensus 147 ~~~i~NRT~~ka~~La~~~~ 166 (286)
T TIGR00507 147 NVIIANRTVEKAEELAERFQ 166 (286)
T ss_pred EEEEEECCHHHHHHHHHHHH
T ss_conf 78998287789999999989
No 159
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=70.25 E-value=1.4 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=27.5
Q ss_pred EEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 24565--4306520001233333210232222234
Q gi|254781102|r 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 117 vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
-|+|- |-.|||||+.=++..|...|+++-++|.
T Consensus 3 ~iaiyGKGGVGKSTtt~NLaAALA~~GkkVl~Igc 37 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 79997998554767899999999978997999898
No 160
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=70.02 E-value=0.42 Score=26.42 Aligned_cols=92 Identities=16% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC---CCC
Q ss_conf 46898899803887676888999998598899984732233343223479709997998999999999982762---002
Q gi|254781102|r 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PEN 116 (497)
Q Consensus 40 v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~---~~~ 116 (497)
++.|..-|.+... +|..+|.+.+=-|+..++--.+.....+ .+.|-=+-+++..-++.=.-.+|+-| +.+
T Consensus 29 vrtg~~~I~i~~~--~gkpvIsE~lCiGCGICvkkCPF~AI~I-----vnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~ 101 (591)
T COG1245 29 VRTGKETIEIDED--TGKPVISEELCIGCGICVKKCPFDAISI-----VNLPEELEEEVVHRYGVNGFKLYRLPTPRPGK 101 (591)
T ss_pred CCCCCEEEEECCC--CCCCEEEHHHHCCCHHHHCCCCCCEEEE-----ECCCHHHCCCCEEECCCCCEEEECCCCCCCCC
T ss_conf 4578726995477--7984367644232034313488661788-----43834643443044057743784578788884
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 24565430--65200012333332
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
|+||-|+| ||||+..+|+--|.
T Consensus 102 V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 102 VVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799876897657889999747607
No 161
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=69.75 E-value=1.5 Score=22.80 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=17.8
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 2456543--065200012333332102322
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
+|||||. .||||++.++. ..|.++
T Consensus 2 iIgiTG~IgsGKStv~~~l~----~~G~~v 27 (179)
T pfam01121 2 IVGLTGGIGSGKSTVANLFA----DLGVPI 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHH----HCCCCE
T ss_conf 89985786478999999999----879919
No 162
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=69.71 E-value=1.6 Score=22.63 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=24.4
Q ss_pred EEEEEEE---CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 4565430---652000123333321023222223
Q gi|254781102|r 118 LAVTGTS---GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITGTn---GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+=||||. |||.++..+.+.|.+.|++++.+-
T Consensus 5 ~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~K 38 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKSVAGYK 38 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7998789995399999999999997899488885
No 163
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=69.68 E-value=2.2 Score=21.75 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=17.1
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 76200224565430--6520001233333210
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
..+|.-+|+|-|.- |||| |+.++.+..
T Consensus 35 ~epPP~vVavvGPpgvGKtT---LiksLvk~y 63 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTT---LIKSLVKNY 63 (225)
T ss_pred CCCCCEEEEEECCCCCCHHH---HHHHHHHHH
T ss_conf 89999699998989977889---999999998
No 164
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=69.50 E-value=3.2 Score=20.68 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCEEEEEEEE---CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 00224565430---65200012333332102322222
Q gi|254781102|r 114 PENILAVTGTS---GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgITGTn---GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
..|++.||=.. |||||+.=+|.-+.++|+++-+|
T Consensus 18 e~K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlI 54 (207)
T TIGR01007 18 EIKVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLI 54 (207)
T ss_pred CEEEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEE
T ss_conf 7058998411058886241078899998568558887
No 165
>KOG3022 consensus
Probab=69.46 E-value=2.2 Score=21.76 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=26.6
Q ss_pred CEEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 224565---43065200012333332102322222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
++|.|+ |-.||+||+..++..|...|.+++.+
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 58999867887761689999999986179717997
No 166
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=69.44 E-value=4.1 Score=19.96 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 689999741211002344403540
Q gi|254781102|r 366 SNSLEMILKNIRTITSGRIIVVFG 389 (497)
Q Consensus 366 P~s~~~aL~~l~~~~~~r~i~V~G 389 (497)
|..++.+++.++ .+| |+|.|
T Consensus 96 P~~~~EA~~~~~---~~~-ivVmG 115 (232)
T TIGR02076 96 PENFEEALEAMS---LGK-IVVMG 115 (232)
T ss_pred CCCHHHHHHHHH---CCC-EEEEC
T ss_conf 889899999982---698-79866
No 167
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=69.39 E-value=5.6 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 2232111254200012221023565
Q gi|254781102|r 241 ESPAIIYADDAYSKEVMKRAHNAGC 265 (497)
Q Consensus 241 ~~~~ViN~Dd~~~~~l~~~~~~~~~ 265 (497)
+|.+=.-.|-.-..++++.+.+...
T Consensus 175 DGVFSMDGdvApLp~iVE~Ae~Yda 199 (392)
T TIGR01825 175 DGVFSMDGDVAPLPEIVELAEKYDA 199 (392)
T ss_pred CCEEECCCCCCCCCHHHHHHHHCCC
T ss_conf 6504256787887323346324595
No 168
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=69.21 E-value=4.7 Score=19.56 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=34.5
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHH
Q ss_conf 999799899999999998276200224565430652000123333321
Q gi|254781102|r 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 (497)
Q Consensus 92 ~i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~ 139 (497)
+-....+..-|-.|+.....+-|.-+||=||| ||||+..+++-+|..
T Consensus 444 fAfTs~sl~lleql~~~Iq~nep~LLVGeTGt-GKTT~IQ~La~~l~~ 490 (4600)
T COG5271 444 FAFTSCSLWLLEQLLWNIQNNEPTLLVGETGT-GKTTMIQYLALKLHF 490 (4600)
T ss_pred EEEHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHHHHH
T ss_conf 00021679999999877416984588714887-654699999998644
No 169
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=68.83 E-value=5.1 Score=19.37 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 86899997412110023444035402665460046899999986198999908
Q gi|254781102|r 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 365 NP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
||.-++++++.+... ..+ ++++ ||+=. +-.++..+...--..|+|.
T Consensus 192 ~~~i~~~al~~~~~~-~~~-~~mV---GD~~~--TDI~~a~~~G~~t~LV~TG 237 (269)
T COG0647 192 SPAIYEAALEKLGLD-RSE-VLMV---GDRLD--TDILGAKAAGLDTLLVLTG 237 (269)
T ss_pred CHHHHHHHHHHHCCC-CCC-EEEE---CCCCH--HHHHHHHHCCCCEEEECCC
T ss_conf 899999999981798-320-8998---58824--5699999859977998226
No 170
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=68.82 E-value=2.3 Score=21.63 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=76.3
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC--------CCCCC
Q ss_conf 5554310432121112321545543211011223455421000000122321112542000122210--------23565
Q gi|254781102|r 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--------HNAGC 265 (497)
Q Consensus 194 l~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~--------~~~~~ 265 (497)
|.+..++.++.+..|+|.|+.+||+..- .+++.+|++ +...+..+|+|. -|-..--..++ +..+.
T Consensus 83 l~~~~~~~~~~~~~~~~Gisn~yL~~l~-----~~a~~~Li~-l~erDdvAIYNS-IPtaEGAimMA~e~td~TIHgS~v 155 (288)
T TIGR02853 83 LKPELLEETKKHCTIYVGISNDYLEELA-----AEAGVKLIE-LFERDDVAIYNS-IPTAEGAIMMAIEHTDFTIHGSNV 155 (288)
T ss_pred ECHHHHHHCCCCEEEEECCCCHHHHHHH-----HHCCCCEEE-ECCCCCEEEECC-CCCHHHHHHHHHHCCCCCEECCEE
T ss_conf 4668995207943899737765899999-----871960241-003575334458-755678999997248962501345
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH----HH
Q ss_conf 32222233332200000014544432112221001012234332221105778887752026767631112344----33
Q gi|254781102|r 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HV 341 (497)
Q Consensus 266 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f----~~ 341 (497)
-++.||.-...+. ....--+..+.+.... - .-+|=+.-...--++++++.+.+.+. ..
T Consensus 156 ~VlGfGRtG~tiA---r~f~aLGA~V~V~AR~--------------~-~dlARI~E~g~~P~~~~~L~~~v~e~DIviNT 217 (288)
T TIGR02853 156 MVLGFGRTGMTIA---RTFSALGARVSVGARS--------------S-ADLARITEMGLEPVPLNKLEEKVAEIDIVINT 217 (288)
T ss_pred EEECCCCHHHHHH---HHHHHCCCEEEEECCC--------------H-HHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf 7884470568999---9997269805753178--------------3-67899999606882716788765000247706
Q ss_pred HHHH---HCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 4552---1000135578602300037868999
Q gi|254781102|r 342 VPGR---FEFVGTNSRGGRIYVDYAHTSNSLE 370 (497)
Q Consensus 342 ~~gR---~E~i~~~~~~~~viiDyahNP~s~~ 370 (497)
+|.+ -+.+..-++ -.+|+|=|.+|-+.-
T Consensus 218 iPaLvlt~~~l~~lp~-~AviiDLAS~PGGtD 248 (288)
T TIGR02853 218 IPALVLTKDVLSKLPK-HAVIIDLASKPGGTD 248 (288)
T ss_pred CCCCCCCHHHHHHCCC-CCEEEEECCCCCCCC
T ss_conf 7630036589952685-848997327848737
No 171
>PRK07667 uridine kinase; Provisional
Probab=68.81 E-value=2 Score=22.06 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=23.7
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 224565430--652000123333321023222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~ 145 (497)
-+|||.|-. ||||.+.-|+..|...|..+.
T Consensus 15 ~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~ 46 (190)
T PRK07667 15 FILGIDGLSRSGKTTFVANLKENMKQEGIPFH 46 (190)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99997798978899999999999866598379
No 172
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=68.79 E-value=1.5 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=27.6
Q ss_pred EEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 24565--4306520001233333210232222234
Q gi|254781102|r 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 117 vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
-|+|- |-.|||||+.=++..|...|+++-++|-
T Consensus 3 ~iaiyGKGGVGKSTTt~NLaAALA~~GkkVL~Igc 37 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGC 37 (273)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 79997998665887899999999977996999897
No 173
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=68.35 E-value=1.5 Score=22.88 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.6
Q ss_pred ECCCEEHHHHHHHHHHCC
Q ss_conf 065200012333332102
Q gi|254781102|r 124 SGKSSVASFVQQICQRSG 141 (497)
Q Consensus 124 nGKTTt~~~l~~iL~~~g 141 (497)
-||||++.+++.+|...|
T Consensus 53 TGKTTVAR~~gklf~emn 70 (261)
T TIGR02881 53 TGKTTVARLLGKLFKEMN 70 (261)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 843899999999985337
No 174
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=67.99 E-value=1.4 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=24.1
Q ss_pred EEEEE-CCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 65430-652000123333321023222223
Q gi|254781102|r 120 VTGTS-GKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 120 ITGTn-GKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
=|||+ |||.++..+...|++.|++++.+-
T Consensus 5 GTdT~VGKT~vt~~l~~~l~~~G~~v~~~K 34 (134)
T cd03109 5 GTGTDIGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 278887689999999999997799177875
No 175
>pfam05577 Peptidase_S28 Serine carboxypeptidase S28. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase.
Probab=67.46 E-value=8.7 Score=17.83 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=66.7
Q ss_pred EEEEEECCCCCCCC-CEEEEECCCC-------CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC--CCCCEEEECCHH
Q ss_conf 00245302314689-8899803887-------6768889999985988999847322333432234--797099979989
Q gi|254781102|r 30 INEVSSDSRHIQAG-WIFVAIVGNK-------EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR--SNTPILVVDNTR 99 (497)
Q Consensus 30 i~~i~~DSr~v~~g-~lFval~G~~-------~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~--~~~p~i~V~d~~ 99 (497)
=...-++++.-++| -+|+-+.||. ..| -..+-|-+-||..++.|..+..+..+.... .++.++ .+.
T Consensus 15 ~qRY~~n~~y~~~ggPifly~gGE~~~~~~~~~~g-~~~~lA~~~~a~~v~lEHRYYG~S~P~~~~s~enL~yL---t~~ 90 (433)
T pfam05577 15 QQRYFYNDQHYRNGGPIFLMIGGEGPESASWVRNG-HWLDLAKEFGALVFSLEHRFYGQSKPIGDLSTANLRYL---SSL 90 (433)
T ss_pred EEEEEEECCEECCCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCC---CHH
T ss_conf 87799855684699978999899876752311362-89999998399699985103503668899881123647---899
Q ss_pred HHHHHHHHHHH---CC----CCCCEEEEEEEECCCEEHHHHHHHHHHCCC
Q ss_conf 99999999982---76----200224565430652000123333321023
Q gi|254781102|r 100 KFLSLFASRLY---GK----HPENILAVTGTSGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 100 ~aL~~la~~~~---~~----~~~~vIgITGTnGKTTt~~~l~~iL~~~g~ 142 (497)
+||..+|.... .. ...++|.+-||.| -||+.-++....
T Consensus 91 QALaD~a~Fi~~~k~~~~~~~~~pwI~~GGSY~-----G~LaAw~R~kYP 135 (433)
T pfam05577 91 QALADVASFIKAMNQKFNGLSSSKWITFGGSYS-----GSLAAWARKKYP 135 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH-----HHHHHHHHHHCC
T ss_conf 999999999999998637889999899878608-----799999998688
No 176
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=67.45 E-value=2 Score=22.01 Aligned_cols=33 Identities=36% Similarity=0.434 Sum_probs=27.4
Q ss_pred EEEE---ECCCEEHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 6543---06520001233333210232222234544
Q gi|254781102|r 120 VTGT---SGKSSVASFVQQICQRSGLSSFQIGPTST 152 (497)
Q Consensus 120 ITGT---nGKTTt~~~l~~iL~~~g~~~~~~g~~~~ 152 (497)
|||| .|||-++..+++-|.+.|++++.+-.+.+
T Consensus 2 vTGtDT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~t 37 (187)
T TIGR00347 2 VTGTDTGVGKTVVSSALAKKLKKAGYSVGYYKPVQT 37 (187)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHC
T ss_conf 102245861789989999999975985251120001
No 177
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=67.19 E-value=1.5 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4306520001233333210232222234
Q gi|254781102|r 122 GTSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 122 GTnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
|=.||||++.-++..|.+.|+++..+.+
T Consensus 8 GGVGKTTvAaalA~~lA~~G~rvLlvs~ 35 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9661999999999999968994999958
No 178
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=66.95 E-value=3.2 Score=20.69 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=28.2
Q ss_pred CCCEEEE----EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 0022456----543065200012333332102322222
Q gi|254781102|r 114 PENILAV----TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 114 ~~~vIgI----TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+.+||.| .|-+|||-+.-+++.-|++.|.+++.+
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvv 83 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVV 83 (336)
T ss_pred CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 88789985577778996889999999998669736798
No 179
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=66.04 E-value=2.5 Score=21.35 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=27.8
Q ss_pred EEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4565--430652000123333321023222223454
Q gi|254781102|r 118 LAVT--GTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 (497)
Q Consensus 118 IgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~~~ 151 (497)
|+|- |--|||||+.=++..|...|+++-++|...
T Consensus 3 iaiyGKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDp 38 (271)
T CHL00072 3 IAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (271)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 999789854485889999999998799799978997
No 180
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=65.89 E-value=6.3 Score=18.74 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHCCCCCCEEEEEEEE------CCCEEHHHHHHHHHHCCCCCC
Q ss_conf 98276200224565430------652000123333321023222
Q gi|254781102|r 108 RLYGKHPENILAVTGTS------GKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 108 ~~~~~~~~~vIgITGTn------GKTTt~~~l~~iL~~~g~~~~ 145 (497)
....++..|+|-||+-| |||||+-=|.+.|...|+++.
T Consensus 45 ~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i 88 (554)
T COG2759 45 RLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAI 88 (554)
T ss_pred HHCCCCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHHHCCCHHE
T ss_conf 53148886089998257888888861254248999986186005
No 181
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=65.88 E-value=2 Score=22.03 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=18.2
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 22456543--065200012333332102322
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
.+|||||. .||||++.++. ..|.++
T Consensus 3 ~~IgiTG~igsGKStv~~~l~----~~G~~v 29 (199)
T PRK00081 3 LIIGLTGGIGSGKSTVANIFA----ELGVPV 29 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCCE
T ss_conf 899957888777999999999----889939
No 182
>TIGR00858 bioF 8-amino-7-oxononanoate synthase; InterPro: IPR004723 8-amino-7-oxononanoate synthase (2.3.1.47 from EC) is involved in biotin biosynthesis. Synonym(s): AONS, 8-amino-7-ketopelargonate synthase, 7-keto-8-amino-pelargonic acid synthetase, 7-KAP synthetase; GO: 0008710 8-amino-7-oxononanoate synthase activity, 0009102 biotin biosynthetic process.
Probab=65.87 E-value=9.4 Score=17.63 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=9.3
Q ss_pred EECCHHHHHHHHHHHCCCC
Q ss_conf 9789899999999965898
Q gi|254781102|r 441 EKGNRIEAIRTAIEMLNKQ 459 (497)
Q Consensus 441 ~~~dr~eAi~~A~~~a~~g 459 (497)
.+.|-++|++.|-++-+.|
T Consensus 321 ~~G~~~~al~~a~~L~~~G 339 (378)
T TIGR00858 321 IIGDEESALALAEELQEQG 339 (378)
T ss_pred EECCCHHHHHHHHHHHHCC
T ss_conf 7089289999999998779
No 183
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=65.85 E-value=1.6 Score=22.54 Aligned_cols=32 Identities=31% Similarity=0.245 Sum_probs=27.2
Q ss_pred CEEEE---EEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 22456---543065200012333332102322222
Q gi|254781102|r 116 NILAV---TGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 116 ~vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.||+| -|-.|||||+--+++.|...|+++-.+
T Consensus 107 ~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~I 141 (387)
T PHA02519 107 VVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 28998616887769999999999999769968999
No 184
>PRK06201 hypothetical protein; Validated
Probab=64.84 E-value=8.2 Score=18.01 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=5.2
Q ss_pred CHHHHHHHHHH
Q ss_conf 86899997412
Q gi|254781102|r 365 TSNSLEMILKN 375 (497)
Q Consensus 365 NP~s~~~aL~~ 375 (497)
+|+.+++.|+.
T Consensus 208 ~~~~i~~~l~~ 218 (221)
T PRK06201 208 DRSWVDRALAR 218 (221)
T ss_pred CHHHHHHHHHH
T ss_conf 87999999997
No 185
>PRK09401 reverse gyrase; Reviewed
Probab=64.72 E-value=4 Score=20.01 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=6.6
Q ss_pred HHHHHCCEEEECCC
Q ss_conf 99861989999088
Q gi|254781102|r 405 IALDLADIAIVTDD 418 (497)
Q Consensus 405 ~a~~~ad~vi~t~d 418 (497)
-++.-+|.|++-+|
T Consensus 714 ~lA~EvDeVyIATD 727 (1176)
T PRK09401 714 ELALEVDEVLIATD 727 (1176)
T ss_pred HHHHHCCEEEECCC
T ss_conf 99875598998789
No 186
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=64.69 E-value=3 Score=20.87 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=26.0
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565430--65200012333332102322222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
|++|+|-. ||||--.-+...|++.|++++.+
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~I 33 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVATI 33 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 937896258867899999999997079950898
No 187
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=64.48 E-value=1.9 Score=22.15 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.6
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 2245654--3065200012333332102322222345
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
++|=+|| -.||||++.-++..+.+.|+++-.+++.
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStD 38 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTD 38 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 1999957985748999999999999589929999469
No 188
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=64.32 E-value=2.1 Score=21.86 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=17.9
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 2456543--065200012333332
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
||||+|- .||||.+..|...|.
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 989968888759999999999879
No 189
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=64.13 E-value=1.9 Score=22.19 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.1
Q ss_pred EEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 65430652000123333321023222223
Q gi|254781102|r 120 VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 120 ITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
--|-.||||++..++..|...|.++..+-
T Consensus 7 ~KGGvGKtt~~~~la~~~a~~g~~vl~iD 35 (104)
T cd02042 7 QKGGVGKTTTAVNLAAALARRGKRVLLID 35 (104)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89987689999999999997799299997
No 190
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase; InterPro: IPR011904 Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) is a ubiquitous enzyme, found in both prokaryotes and eukaryotes, which catalyses the formation of acetyl-CoA from acetate, coenzyme A (CoA) and ATP as shown below : ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. It is especially important in eukayotic species as it is the only route for the activation of acetate to acetyl-CoA in these organisms (some prokaryotic species can also activate acetate by either acetate kinase/phosphotransacetylase or by ADP-forming acetyl-CoA synthase). Eukaryotes typically have two isoforms of acetyl-CoA synthase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. The crystal structures of a eukaryotic (Q01574 from SWISSPROT, from yeast) and bacterial (Q8ZKF6 from SWISSPROT, from Salmonella) form of this enzyme have been determined , . The yeast enzyme is trimeric, while the bacterial enzyme is monomeric. The trimeric state of the yeast protein may be unique to this organism however, as the residues involved in the trimer interface are poorly conserved in other sequences. Despite differences in the oligomeric state of the two enzyme, the structures of the monomers are almost identical. A large N-terminal domain (~500 residues) containing two parallel beta sheets is followed by a small (~110 residues) C-terminal domain containing a three-stranded beta sheet with helices. The active site occurs at the domain interface, with its contents determining the orientation of the C-terminal domain.; GO: 0003987 acetate-CoA ligase activity, 0016208 AMP binding.
Probab=63.85 E-value=10 Score=17.39 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCCCCEEEEECCCC--CCHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCC----CCCCCEEEE-CCHHHHHHHHHHHHHC
Q ss_conf 46898899803887--6768889999-98598899984732233343223----479709997-9989999999999827
Q gi|254781102|r 40 IQAGWIFVAIVGNK--EDGHLFIPQA-IAQGAEAIVVSSAYSLQDFSATI----RSNTPILVV-DNTRKFLSLFASRLYG 111 (497)
Q Consensus 40 v~~g~lFval~G~~--~dGh~fi~~A-~~~GA~~~i~~~~~~~~~~~~~~----~~~~p~i~V-~d~~~aL~~la~~~~~ 111 (497)
++++|+|.|- +.- .=||.||=-. +.+||..++-|-....|+..... ..++.+++. +=...+|.+++..+.+
T Consensus 287 ~~d~D~fWCT-ADvGWiTGHSYiVYGPL~~GAT~~mfEG~P~YP~~~R~W~~iekh~vtiFYTAPTAIR~L~r~G~~~~~ 365 (643)
T TIGR02188 287 IKDGDIFWCT-ADVGWITGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVK 365 (643)
T ss_pred CCCCCEEEEE-CCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCHHHH
T ss_conf 3799626862-112002053240124221153178743778332787678553315765033156899999861112134
Q ss_pred CCC
Q ss_conf 620
Q gi|254781102|r 112 KHP 114 (497)
Q Consensus 112 ~~~ 114 (497)
++.
T Consensus 366 k~D 368 (643)
T TIGR02188 366 KHD 368 (643)
T ss_pred HCC
T ss_conf 417
No 191
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=63.35 E-value=2.6 Score=21.23 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=25.7
Q ss_pred EEEEE---EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565---43065200012333332102322222
Q gi|254781102|r 117 ILAVT---GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|+|+ |-.||||++-=++..|.+.|+++..+
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~ 34 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLL 34 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899649999839999999999999789969999
No 192
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=63.33 E-value=2 Score=22.03 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=17.4
Q ss_pred EEEEEEEECCCEEHHHHHHHHH
Q ss_conf 2456543065200012333332
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~ 138 (497)
|.||.| .||||+...+++-|.
T Consensus 8 VmGVsG-sGKSTvg~~LA~~L~ 28 (176)
T PRK09825 8 LMGVSG-SGKSLIGSKIAALFS 28 (176)
T ss_pred EEECCC-CCHHHHHHHHHHHHC
T ss_conf 982898-998999999999959
No 193
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=63.28 E-value=3.7 Score=20.23 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=28.0
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHH-CCCCCCCCCC
Q ss_conf 2245654--30652000123333321-0232222234
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQR-SGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~-~g~~~~~~g~ 149 (497)
+.|+|.| -.|||||+.=++..|.. .|+++-.+|-
T Consensus 3 ~~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl~Igc 39 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVFIHGC 39 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 3899989985446545999999999647988999797
No 194
>PRK07429 phosphoribulokinase; Provisional
Probab=62.97 E-value=2.6 Score=21.24 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.6
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 224565430--6520001233333210
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
-+|||+|.. ||||.+.-|..+|...
T Consensus 9 ~IIGIAGgSGSGKTTv~r~I~~~fg~~ 35 (331)
T PRK07429 9 VIIGVAGDSGCGKSTFLRRLADLFGEE 35 (331)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 899985788778999999999983888
No 195
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=62.94 E-value=2.7 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.5
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHC
Q ss_conf 22456543--06520001233333210
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRS 140 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~ 140 (497)
-+|||+|- .||||.+..|...|...
T Consensus 9 iiIgIaG~SgSGKTTv~~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 999986798778899999999982867
No 196
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=62.81 E-value=1.3 Score=23.27 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCEEEECCHHH--HHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 70999799899--999999998276200224565430--652000123333321
Q gi|254781102|r 90 TPILVVDNTRK--FLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 90 ~p~i~V~d~~~--aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-|++.|+|... ||..+. +.-.+..++|+.|.| ||||+-.++.-++..
T Consensus 2 ~pvl~v~~ls~~~aL~~vs---l~v~~GEi~~liG~nGaGKSTll~~l~G~~~p 52 (182)
T cd03215 2 EPVLEVRGLSVKGAVRDVS---FEVRAGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CCEEEEECCCCCCCEECEE---EEECCCCEEEEECCCCCCCCHHHHHHCCCCCC
T ss_conf 8379997980678762317---89859969999888999926377876698678
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=62.76 E-value=11 Score=17.26 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=22.8
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9799899999999998276200224565430--65200012333332
Q gi|254781102|r 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 94 ~V~d~~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-+.-.++|..|-..... ..-++.|||-. ||||....+..-|.
T Consensus 24 ~s~~h~~al~~L~~~l~~--~~g~~lltGe~GtGKTtllr~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQ--REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 786699999999999964--896599972998988999999998459
No 198
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=62.23 E-value=2.3 Score=21.58 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=18.0
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 2456543--0652000123333321023222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
+|||||. .||||.+.++ +..|.++.
T Consensus 1 iigiTG~igSGKStv~~~l----~~~g~~v~ 27 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLL----KELGIPVI 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHH----HHCCCEEE
T ss_conf 9886378757899999999----98799099
No 199
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=62.11 E-value=2.7 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 43065200012333332102322222
Q gi|254781102|r 122 GTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 122 GTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
|=.|||||+.=|+-.|.+.|+++..+
T Consensus 10 GGtGKTT~tANLgVALA~~Gk~V~~~ 35 (258)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLVL 35 (258)
T ss_pred CCCCHHHEEEHHHHHHHHCCCEEEEE
T ss_conf 89861400000778898609768999
No 200
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=62.05 E-value=2.6 Score=21.27 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.7
Q ss_pred CEEEEEEEE--CC----CEEHHHHHHHHHH
Q ss_conf 224565430--65----2000123333321
Q gi|254781102|r 116 NILAVTGTS--GK----SSVASFVQQICQR 139 (497)
Q Consensus 116 ~vIgITGTn--GK----TTt~~~l~~iL~~ 139 (497)
-+|||+|-. || ||+..+|.+.|..
T Consensus 11 ~iigI~GgSgSGKs~iATtV~~~i~~~~~~ 40 (220)
T TIGR00235 11 IIIGISGGSGSGKSLIATTVARKIYEQLGK 40 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 799701766101567899999999998314
No 201
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=61.81 E-value=11 Score=17.15 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=31.3
Q ss_pred HHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 999998619899990887989898999999983479809978989999999996589889999446886
Q gi|254781102|r 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 (497)
Q Consensus 402 mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e 470 (497)
+.++-.=.-..|.+|.|||.. .+.|+++ +|++.+.-....++-++.-.+.-..|-+|-++|-|.-
T Consensus 456 f~elR~MgIkTvM~TGDN~~T--Aa~IA~E--AGVDdfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTN 520 (681)
T COG2216 456 FAELRKMGIKTVMITGDNPLT--AAAIAAE--AGVDDFIAEATPEDKLALIRQEQAEGRLVAMTGDGTN 520 (681)
T ss_pred HHHHHHCCCEEEEEECCCHHH--HHHHHHH--HCCHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 999996597599980897777--9999987--1801465528958899999988745958998079987
No 202
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=61.58 E-value=5.8 Score=18.96 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=23.9
Q ss_pred HHHHHHCCCCCCE--EEEEEEECCCEEHHHHHHHHHHCC
Q ss_conf 9999827620022--456543065200012333332102
Q gi|254781102|r 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 (497)
Q Consensus 105 la~~~~~~~~~~v--IgITGTnGKTTt~~~l~~iL~~~g 141 (497)
|.....+..+.++ .|.+|| |||+|+..+..-|++..
T Consensus 46 l~~~l~g~~~~n~~I~G~pGT-GKT~~vk~v~~~l~~~~ 83 (394)
T PRK00411 46 LRPALRGSRPSNVLILGPPGT-GKTTTVKKVFEELEEAA 83 (394)
T ss_pred HHHHHCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHC
T ss_conf 999975999984799889999-89999999999999746
No 203
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=61.49 E-value=2.2 Score=21.78 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=25.9
Q ss_pred EEEEE---EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565---430652000123333321023222223
Q gi|254781102|r 117 ILAVT---GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgIT---GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|+|+ |-.||||++.-++..|.+.|++++.+-
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d 35 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98997499988199999999999998799789997
No 204
>KOG0950 consensus
Probab=61.27 E-value=11 Score=17.25 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 02314689889980388767688899999859889998473223334322347970999799899999999998276200
Q gi|254781102|r 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 (497)
Q Consensus 36 DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~ 115 (497)
-++.+.-|-.|.- -|.++|+.++|++|+..|...+++....-... ...+..++|.- -|.-.--.+-..-| +
T Consensus 517 l~~ti~~GvAyHh-aGLT~eER~~iE~afr~g~i~vl~aTSTlaaG---VNLPArRVIir-aP~~g~~~l~~~~Y----k 587 (1008)
T KOG0950 517 LAKTIPYGVAYHH-AGLTSEEREIIEAAFREGNIFVLVATSTLAAG---VNLPARRVIIR-APYVGREFLTRLEY----K 587 (1008)
T ss_pred HHEECCCCCEECC-CCCCCCHHHHHHHHHHHCCEEEEEECCHHHCC---CCCCCCEEEEE-CCCCCCCHHHHHHH----H
T ss_conf 7602003533034-44650068889999974676999943446406---86875115874-77546230002467----7
Q ss_pred CEEEEEEEECCCEEH
Q ss_conf 224565430652000
Q gi|254781102|r 116 NILAVTGTSGKSSVA 130 (497)
Q Consensus 116 ~vIgITGTnGKTTt~ 130 (497)
+++|.||..|..|.-
T Consensus 588 QM~GRAGR~gidT~G 602 (1008)
T KOG0950 588 QMVGRAGRTGIDTLG 602 (1008)
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 653020003346576
No 205
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=61.08 E-value=5.5 Score=19.11 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 97678786678988732033556
Q gi|254781102|r 1 MKLQDLIYKDFPELINQLSIFPM 23 (497)
Q Consensus 1 mkl~~ll~~~~~~~~~~~~~~~~ 23 (497)
||||+.|...+..++...+...+
T Consensus 1 mklkntlg~aig~lvaa~s~~al 23 (184)
T pfam05736 1 MKLKNTLGFAIGSLVAATSFGAL 23 (184)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 95320155788888887301677
No 206
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=60.89 E-value=2.2 Score=21.67 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=24.5
Q ss_pred EEEEE--EECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 45654--30652000123333321023222223
Q gi|254781102|r 118 LAVTG--TSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
|+|+| -.||||++.++++.|.+.|+++..+-
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 789889977499999999999997899699998
No 207
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=60.77 E-value=12 Score=17.04 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 887320335565557430024530231
Q gi|254781102|r 13 ELINQLSIFPMQWRERKINEVSSDSRH 39 (497)
Q Consensus 13 ~~~~~~~~~~~~~~d~~i~~i~~DSr~ 39 (497)
+.+..+.+....+.=+.|.|..++++-
T Consensus 6 ~~~~~~~~~~~~GrV~~I~G~lIea~g 32 (435)
T PRK07721 6 DLIETLDPYKRYGKVKRVIGLMIESKG 32 (435)
T ss_pred HHHHCCCCCCCCEEEEEEECEEEEEEE
T ss_conf 998627975231289999863899995
No 208
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=60.43 E-value=5.7 Score=19.06 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCHHHHH-HHHHHHHH-CCCCCCE--EEEEEEECCCEEHHHHHHHHHHCCCC
Q ss_conf 9989999-99999982-7620022--45654306520001233333210232
Q gi|254781102|r 96 DNTRKFL-SLFASRLY-GKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 96 ~d~~~aL-~~la~~~~-~~~~~~v--IgITGTnGKTTt~~~l~~iL~~~g~~ 143 (497)
++-...| ..|-...+ +..|.+| .|=|| .|||+|+..+...|+..-..
T Consensus 23 deqI~~l~~~L~~~l~PG~~P~Ni~iYGkTG-tGKT~vt~~v~~~l~~~~~~ 73 (383)
T TIGR02928 23 DEQIEELAKALRPILRPGSRPSNIFIYGKTG-TGKTAVTKYVMKELEEAAED 73 (383)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 7899999999887506748987258878889-87889999999999998622
No 209
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=60.35 E-value=2.9 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..+++++|-| ||||.-.++.-+++.
T Consensus 23 ~i~~G~i~~l~G~NGaGKSTLlkli~Gl~~p 53 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9879979999889998799999999778588
No 210
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=60.19 E-value=12 Score=16.97 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHCCCCCCCEE
Q ss_conf 99997412110023444035
Q gi|254781102|r 368 SLEMILKNIRTITSGRIIVV 387 (497)
Q Consensus 368 s~~~aL~~l~~~~~~r~i~V 387 (497)
.++++|+. -.+|++++|
T Consensus 47 ~v~~al~~---~~~G~VLVV 63 (160)
T PRK09372 47 LVKELLEE---PGEGRVLVV 63 (160)
T ss_pred HHHHHHHC---CCCCCEEEE
T ss_conf 99999852---599959999
No 211
>pfam02696 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family.
Probab=59.85 E-value=10 Score=17.41 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1112321545543211011223
Q gi|254781102|r 206 AGSFTNLGRDHIDYHQTQQAYF 227 (497)
Q Consensus 206 iaviTNI~~dHLd~~gs~e~y~ 227 (497)
.||+|-+++.|| ++||||-.+
T Consensus 173 gAvl~RvA~Shi-R~GtFe~~~ 193 (487)
T pfam02696 173 AAVMIRFAPSHI-RFGTFERFH 193 (487)
T ss_pred CEEEEEECCCCC-EEEHHHHHH
T ss_conf 316887415530-210179988
No 212
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=59.83 E-value=3.3 Score=20.61 Aligned_cols=32 Identities=41% Similarity=0.511 Sum_probs=27.1
Q ss_pred EEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 24565--430652000123333321023222223
Q gi|254781102|r 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+++|- |=-||+||+.=|+..|...|+++-+||
T Consensus 2 ~lAvYGKGGiGKSTTssNLSvA~A~~GkkVlQIG 35 (275)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVALAKKGKKVLQIG 35 (275)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 6888638887700467899999984699189852
No 213
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=59.60 E-value=6.8 Score=18.55 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=12.1
Q ss_pred CEEEEEEE---ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 22456543---065200012333332102322
Q gi|254781102|r 116 NILAVTGT---SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGT---nGKTTt~~~l~~iL~~~g~~~ 144 (497)
+.++||.. -|||||+.=++..|.+.|.++
T Consensus 104 ~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~Rv 135 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKT 135 (274)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 38999689999989999999999999679919
No 214
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=59.53 E-value=12 Score=16.90 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=6.9
Q ss_pred HHHHHHCCCEEEEEC
Q ss_conf 999998598899984
Q gi|254781102|r 60 IPQAIAQGAEAIVVS 74 (497)
Q Consensus 60 i~~A~~~GA~~~i~~ 74 (497)
.++|+ +||..|+++
T Consensus 68 ~~eAl-~gADfVi~~ 81 (425)
T cd05197 68 LEDAI-IDADFVINQ 81 (425)
T ss_pred HHHHH-CCCCEEEEE
T ss_conf 99985-689999998
No 215
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=59.14 E-value=12 Score=16.86 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHH-HCCCCEEEECCHHHH
Q ss_conf 9974121100234440354026654600468999999861989999088798989899999998-347980997898999
Q gi|254781102|r 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEA 448 (497)
Q Consensus 370 ~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~-~g~~~~~~~~dr~eA 448 (497)
...++-+ .++.++++ +|||... .++.+ .....-+|+|...+ .++.+.+... .+++-.....|-.++
T Consensus 32 ~~~l~~~---~~g~lvI~---~gdR~di---~~~a~-~~~~~~iIlTgg~~---p~~~v~~la~~~~ipii~t~~dT~~t 98 (105)
T pfam07085 32 ENMLEYL---RPGDLVIT---PGDREDI---QLAAL-LAGIAGLILTGGFE---PSEEVLKLAEEAGLPVLSTPYDTFTT 98 (105)
T ss_pred HHHHHHH---CCCCEEEE---ECCCHHH---HHHHH-HHCCCEEEEECCCC---CCHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 9999860---68979999---2796899---99999-82487899948989---89999999987798399966889999
Q ss_pred HH
Q ss_conf 99
Q gi|254781102|r 449 IR 450 (497)
Q Consensus 449 i~ 450 (497)
.+
T Consensus 99 a~ 100 (105)
T pfam07085 99 AR 100 (105)
T ss_pred HH
T ss_conf 99
No 216
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=58.88 E-value=10 Score=17.32 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=11.6
Q ss_pred HCCCCEEEEC---CHHHHHHHHHHHCC
Q ss_conf 3479809978---98999999999658
Q gi|254781102|r 434 HGIPGFIEKG---NRIEAIRTAIEMLN 457 (497)
Q Consensus 434 ~g~~~~~~~~---dr~eAi~~A~~~a~ 457 (497)
.|+.+++..+ +.+++++...+..+
T Consensus 275 ~Gv~~i~e~~L~~~E~~~f~~Sa~~LK 301 (302)
T TIGR01771 275 NGVEEIIELPLSDEEKEAFQKSAETLK 301 (302)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 465242427999899999998999960
No 217
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=58.26 E-value=2.9 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.2
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-.+..++||+|.| ||||.-.++.-++..
T Consensus 23 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 879959999999999999999999667788
No 218
>PTZ00301 uridine kinase; Provisional
Probab=58.18 E-value=3.7 Score=20.26 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=18.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHH-HHHHCC
Q ss_conf 00224565430--65200012333-332102
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQ-ICQRSG 141 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~-iL~~~g 141 (497)
+..||||+|-. ||||.+.-+.. ++...|
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~ 32 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9889999688767899999999999876149
No 219
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.60 E-value=4.2 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=12.5
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHH
Q ss_conf 456543--0652000123333321
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQR 139 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~ 139 (497)
.-.||+ .||||++++++..|.-
T Consensus 41 ylf~G~rGvGKTt~ari~Ak~lnc 64 (721)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNC 64 (721)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 750279988898999999999768
No 220
>PRK06762 hypothetical protein; Provisional
Probab=57.08 E-value=4 Score=20.06 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=34.8
Q ss_pred CEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 22456543--06520001233333210232222234544----332355445767531221111111011223333356
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~~~----~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlE 188 (497)
++|-|-|- .||||++.-+.+-| |..+.+++-.-. +.....+.. -++.|...+..+....+.++|+|
T Consensus 3 ~LIiiRGNSgSGKtT~Ak~L~~~~---G~g~lLvsQD~vRR~mLr~kD~~g~----~~i~Li~~~~~yg~~~~~~VIlE 74 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRRDMLRVKDGPGN----LSIDLIEQLVRYGLQHCEFVILE 74 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEHHHHHHHHHHCCCCCCC----CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 289997888888789999999986---8885785375899998405577999----78689999999998569989997
No 221
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=56.92 E-value=5.6 Score=19.10 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 022456543--06520001233333210232222234
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
.++|||-|- -||+||+.=++..|...|+++-.+|-
T Consensus 31 ~~~IAiYGKGGIGKSTts~NlsAAlA~~GkkVm~IGC 67 (329)
T cd02033 31 TQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 5499997688435616889999999977996999788
No 222
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=56.84 E-value=13 Score=16.61 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=11.0
Q ss_pred CCCEEEEECCCCCCHHHHHHH
Q ss_conf 898899803887676888999
Q gi|254781102|r 42 AGWIFVAIVGNKEDGHLFIPQ 62 (497)
Q Consensus 42 ~g~lFval~G~~~dGh~fi~~ 62 (497)
.+-..+|+++....+.-|+.-
T Consensus 27 ~d~g~yavr~~d~q~dpvap~ 47 (554)
T COG3044 27 YDFGDYAVRIDDIQSDPVAPA 47 (554)
T ss_pred CCCCEEEEECCCCCCCCCCCH
T ss_conf 465405897345666633562
No 223
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=56.68 E-value=3.8 Score=20.15 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=15.5
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHH
Q ss_conf 456543--0652000123333321
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQR 139 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~ 139 (497)
.-.||| .||||++++++..|.-
T Consensus 41 ~lf~g~rg~gkt~~ar~~a~~lnc 64 (663)
T PRK08770 41 FLFTGTRGVGKTTIARIFAKSLNC 64 (663)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 762279988888999999998678
No 224
>PRK13115 consensus
Probab=56.53 E-value=14 Score=16.58 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred HHHHHCCCCCCCCCCEEEECC-------CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 455210001355786023000-------3786899997412110023444035402665460046899999986198999
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVDY-------AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiDy-------ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi 414 (497)
.+-|++.+.....|+.-++-. ...+..+...++.+|+++.-.+.+=||. + .+...+.+.+++|-+|
T Consensus 164 ~~eRi~~i~~~a~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI---s----~~e~~~~~~~~aDGvI 236 (269)
T PRK13115 164 TPERLAETVEASRGFVYAASTMGVTGARDAVSSAAPELVARVRAASDIPVCVGLGV---S----SAAQAAEIAGYADGVI 236 (269)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCC---C----CHHHHHHHHHHCCEEE
T ss_conf 88999999844888089975454567764441779999999997179981797278---9----9999999980299999
Q ss_pred ECCCCCCCCCHHHHHHHHHHC-CCCEE-EECCHHHHHHHHH
Q ss_conf 908879898989999999834-79809-9789899999999
Q gi|254781102|r 415 VTDDNPRSEDPEKIRAEIIHG-IPGFI-EKGNRIEAIRTAI 453 (497)
Q Consensus 415 ~t~d~~r~e~~~~I~~~i~~g-~~~~~-~~~dr~eAi~~A~ 453 (497)
+-+ .+.+.+.++ .+.+. .+.+..+|++.|+
T Consensus 237 VGS---------a~V~~i~~~g~~~v~~~~~el~~~~k~a~ 268 (269)
T PRK13115 237 VGS---------ALVSALLDGGLPAVRALTEELAAGVRRAV 268 (269)
T ss_pred ECH---------HHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 868---------99999997597999999999999999853
No 225
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=55.21 E-value=3.7 Score=20.23 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEEEEECCCEEHHHHHHHHH-HCCCCCCCC
Q ss_conf 456543065200012333332-102322222
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQI 147 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~-~~g~~~~~~ 147 (497)
...-|=.|||||+-.++..|. ..|+++-.+
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8578885199999999999998389978999
No 226
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=54.96 E-value=6.7 Score=18.57 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=29.7
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 6200224565430--65200012333332102322222
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.+..-+|=+||=. ||||.+.-+..-|.+.|+.+.+.
T Consensus 16 ~h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G~~~~~L 53 (187)
T TIGR00455 16 KHRGVVLWLTGLSGSGKSTIANALEKKLEKKGYRVYVL 53 (187)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 79738985116885635799999999999669749997
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.85 E-value=14 Score=16.40 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 86899997412110
Q gi|254781102|r 365 TSNSLEMILKNIRT 378 (497)
Q Consensus 365 NP~s~~~aL~~l~~ 378 (497)
+|+.+..+|..++.
T Consensus 304 dp~eL~~AL~~lkd 317 (436)
T PRK11889 304 DEAAMTRALTYFKE 317 (436)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 88999999998763
No 228
>PRK13236 nitrogenase reductase; Reviewed
Probab=54.75 E-value=6 Score=18.89 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0022456543--065200012333332102322222345
Q gi|254781102|r 114 PENILAVTGT--SGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 114 ~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
+.+.|+|-|- -||+||+.=++..|...|+++-++|-.
T Consensus 5 ~mk~IAiYGKGGIGKSTts~NlsAAlA~~G~rVl~IGCD 43 (295)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (295)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 761899967984347578999999999779969997889
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=54.71 E-value=5 Score=19.43 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=34.0
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 997998999999999982762002245654306520001233333210232222
Q gi|254781102|r 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 93 i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
|..+.+.....+.-+|+-..+|-+++|=|| .||||.+.-+|.-+. +++-.
T Consensus 2 i~t~~v~~v~~R~l~yL~~G~PvHl~GPaG-~GKT~LA~hvA~~r~---RPV~l 51 (265)
T TIGR02640 2 IETDAVKRVTSRALRYLKSGYPVHLRGPAG-TGKTTLAMHVARKRD---RPVVL 51 (265)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCC-CCHHHHHHHHHHHCC---CCEEE
T ss_conf 877237999998766322788667447888-556899999997368---96899
No 230
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.69 E-value=15 Score=16.39 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 6023000378689999741211002344403540266
Q gi|254781102|r 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 (497)
Q Consensus 356 ~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~G 392 (497)
+-+++|.+- +..+..++++|+ ..|+ +++.|.++
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~--~~G~-~v~vG~~~ 262 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALR--RGGT-LVLVGLPG 262 (339)
T ss_pred CCEEEECCC-HHHHHHHHHHHH--CCCE-EEEECCCC
T ss_conf 739999877-455999999864--2978-99978888
No 231
>PRK06315 type III secretion system ATPase; Provisional
Probab=54.60 E-value=15 Score=16.38 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCC---CCCCCCCCEEEEEECCC--CCCCCCEEE
Q ss_conf 789887320335---56555743002453023--146898899
Q gi|254781102|r 10 DFPELINQLSIF---PMQWRERKINEVSSDSR--HIQAGWIFV 47 (497)
Q Consensus 10 ~~~~~~~~~~~~---~~~~~d~~i~~i~~DSr--~v~~g~lFv 47 (497)
.+..+...+... ...+.=+.|.|..+.+. .+.-|++-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~GrV~~v~G~~ie~~g~~~~iGelc~ 49 (442)
T PRK06315 7 DFDTLMSQLPDVQLTTVVGRITEVVGMLIKAVVPDVRVGEVCL 49 (442)
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCEEE
T ss_conf 4999999861388621357999999789999867898678689
No 232
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=54.29 E-value=3.5 Score=20.43 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=10.9
Q ss_pred HHHHHCCCCCCCCCCCCCC
Q ss_conf 2100000012232111254
Q gi|254781102|r 232 RLFEELLPKESPAIIYADD 250 (497)
Q Consensus 232 ~If~~~~~~~~~~ViN~Dd 250 (497)
-||+.++|.+|...+++..
T Consensus 140 DLf~alLP~~GLGLiCG~T 158 (374)
T TIGR02525 140 DLFEALLPKAGLGLICGET 158 (374)
T ss_pred HHHHHHCCCCCCEEECCCC
T ss_conf 8998705003780221778
No 233
>CHL00181 cbbX CbbX; Provisional
Probab=54.05 E-value=3.6 Score=20.36 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHHCCC
Q ss_conf 456543--0652000123333321023
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQRSGL 142 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~~g~ 142 (497)
...+|- .||||++.+++.+|...|.
T Consensus 62 ~vF~GnPGTGKTTVARl~a~il~~lG~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYRLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 888789986799999999999998699
No 234
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=53.66 E-value=5.7 Score=19.04 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=24.2
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 24565430--6520001233333210232222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
+|.|.|.. ||||..+++...+.+.|++...
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~ 33 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAV 33 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 79999489998999999999999987994489
No 235
>PRK06820 type III secretion system ATPase; Validated
Probab=53.62 E-value=15 Score=16.28 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=6.0
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 104 ~lLGRVvD~lG~P 116 (445)
T PRK06820 104 DLAGRILDGLGAP 116 (445)
T ss_pred CCCCCEECCCCCC
T ss_conf 4027870688753
No 236
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=53.62 E-value=15 Score=16.33 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=7.4
Q ss_pred HHHCCCCHHHHHH
Q ss_conf 7520267676311
Q gi|254781102|r 322 CIAIGIDSALVLE 334 (497)
Q Consensus 322 a~~lGi~~~~i~~ 334 (497)
...-|+|.+++..
T Consensus 188 st~~GIPv~~lI~ 200 (308)
T TIGR01763 188 STVAGIPVEELIA 200 (308)
T ss_pred CEECCCCHHHCCC
T ss_conf 0011665567176
No 237
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211 SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=53.53 E-value=6.7 Score=18.56 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5778887752026767631112344334552
Q gi|254781102|r 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 315 alaAia~a~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
=.+.|-+|..+|+|+++|.++|..++ .||
T Consensus 46 RVa~Ik~AQ~vGipL~~I~~ALa~LP--~gr 74 (142)
T TIGR01950 46 RVAVIKVAQRVGIPLAEIAEALAELP--EGR 74 (142)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCC--CCC
T ss_conf 56743323325898889999997346--889
No 238
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.50 E-value=4.3 Score=19.82 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=19.8
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.+..+++|+|.| ||||.-.++.-+++.
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p 52 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79979999999998199999999679889
No 239
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=53.42 E-value=3.6 Score=20.36 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=25.7
Q ss_pred CEEEE---EEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 22456---5430652000123333321023222223
Q gi|254781102|r 116 NILAV---TGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|.+ -|-.||||++-.++.-|...|.++..+-
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD 37 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFE 37 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 379996179986599999999999996899599996
No 240
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=53.31 E-value=6.4 Score=18.72 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 02245654--3065200012333332102322222345
Q gi|254781102|r 115 ENILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 115 ~~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
.+-|+|-| --||+||+.=++..|...|+++-++|-.
T Consensus 4 mr~IAiYGKGGIGKSTtssNlsAAlA~~G~rVl~IGCD 41 (293)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (293)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 75799977984458778999999999779969997489
No 241
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=53.23 E-value=6.7 Score=18.57 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 99999999998276200224565430--6520001233333210
Q gi|254781102|r 99 RKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 99 ~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
..|.+.+. +.-|+..++|.-|-| |||||--|+.-++...
T Consensus 37 ~~AVqdis---f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~ 77 (325)
T COG4586 37 IEAVQDIS---FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT 77 (325)
T ss_pred HHHHHEEE---EECCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 02655114---534898689887588886033398973860368
No 242
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.13 E-value=4.7 Score=19.56 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=8.9
Q ss_pred EEEE--ECCCEEHHHHHHHHH
Q ss_conf 6543--065200012333332
Q gi|254781102|r 120 VTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 120 ITGT--nGKTTt~~~l~~iL~ 138 (497)
.||| .||||++++++..|.
T Consensus 43 f~g~rg~gktt~ari~ak~ln 63 (696)
T PRK06872 43 FSGTRGVGKTSIARLFAKGLN 63 (696)
T ss_pred EECCCCCCHHHHHHHHHHHHC
T ss_conf 117898888899999999867
No 243
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=53.12 E-value=4.4 Score=19.76 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
++..++||.|.| ||||+-.++.-++..
T Consensus 46 ~~GeivgilG~NGaGKSTLl~~i~Gl~~p 74 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 38989999979998199999999758777
No 244
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=52.96 E-value=16 Score=16.21 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=4.0
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999983
Q gi|254781102|r 424 DPEKIRAEIIH 434 (497)
Q Consensus 424 ~~~~I~~~i~~ 434 (497)
+++++.+.+..
T Consensus 365 ~~~e~ie~l~~ 375 (414)
T PRK13940 365 DAEEIIKRFAY 375 (414)
T ss_pred CHHHHHHHHHH
T ss_conf 89999999999
No 245
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=52.52 E-value=5.5 Score=19.13 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=23.8
Q ss_pred EEEEEEEE-CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565430-65200012333332102322222
Q gi|254781102|r 117 ILAVTGTS-GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTn-GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|+=|+|+ ||||.+.-|..+|++.|+++..+
T Consensus 7 mI~gt~S~~GKT~vt~gL~r~l~~rG~~VapF 38 (451)
T PRK01077 7 VIAAPASGSGKTTVTLGLMRALRRRGLRVQPF 38 (451)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99868999978999999999999687945753
No 246
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=52.47 E-value=5.2 Score=19.32 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9899999999998276200224565430--65200012333332
Q gi|254781102|r 97 NTRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 97 d~~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+...+|..+. +.-++..++||.|.| ||||.-.++..++.
T Consensus 15 ~~~~vL~~is---f~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 15 GGNAVLENIS---FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCCCEECEE---EEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9966242507---9987999999999999979999999960357
No 247
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=52.36 E-value=16 Score=16.15 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 999861989999088798989899999998347
Q gi|254781102|r 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 (497)
Q Consensus 404 ~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~ 436 (497)
+.....+|++|+----.+++||.+-+.++.+.+
T Consensus 180 ~ai~~Gad~iVVGR~It~A~dP~~aa~~i~~~i 212 (215)
T PRK13813 180 DAIKAGADYVIVGRSIYNAADPREAAKKIREEI 212 (215)
T ss_pred HHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 999818999998943358999999999999986
No 248
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=52.25 E-value=13 Score=16.71 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 340 ~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+|+|+|..+|-+...+ ..+...-..++..+|..+++ ...+.|+| |.+ +=+.+..+||.+++|-
T Consensus 52 rpLp~R~nIVlTr~~~---~~~~~~~~~s~~~al~~~~~---~~~i~IiG--G~~-------IY~~~l~~~d~l~lT~ 114 (159)
T PRK10769 52 RPLPGRKNIVLSSQPG---TDDRVTWVKSVDEAIAACGD---VPEIMVIG--GGR-------VYEQFLPKAQKLYLTH 114 (159)
T ss_pred CCCCCCEEEEEECCCC---CCCCEEEECCHHHHHHHHCC---CCEEEEEC--CHH-------HHHHHHHHCCEEEEEE
T ss_conf 6799977999978898---77995999999999998369---98099973--999-------9999997789999999
No 249
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=52.03 E-value=5.9 Score=18.96 Aligned_cols=30 Identities=23% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEEEEE--ECCCEEHHH-HHHHHHHCCCCCCC
Q ss_conf 2456543--065200012-33333210232222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASF-VQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~-l~~iL~~~g~~~~~ 146 (497)
.|+|||- .||||.+.+ +..+++..|+.+-.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv 34 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 699965997658999999999998648954999
No 250
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=51.97 E-value=11 Score=17.07 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.0
Q ss_pred ECCCCCCHHH
Q ss_conf 0388767688
Q gi|254781102|r 49 IVGNKEDGHL 58 (497)
Q Consensus 49 l~G~~~dGh~ 58 (497)
++|.+.-.|+
T Consensus 21 vPgsKSiShR 30 (662)
T PRK11860 21 LPGSKSISNR 30 (662)
T ss_pred CCCCHHHHHH
T ss_conf 8897799999
No 251
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=51.91 E-value=16 Score=16.10 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 22321112542000122210235653222223
Q gi|254781102|r 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 (497)
Q Consensus 241 ~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~ 272 (497)
++.++.+.|.......++.+...+.+++.++.
T Consensus 57 DgIii~p~~~~~~~~~l~~a~~agIPvV~~d~ 88 (273)
T cd06309 57 DVIILAPVVETGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred CEEEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 99998057654358999999974998899826
No 252
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.78 E-value=6.2 Score=18.81 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCE--EEEECCCCCCHHHHHHHHHHC
Q ss_conf 87866789887320335565557430024530231468988--998038876768889999985
Q gi|254781102|r 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWI--FVAIVGNKEDGHLFIPQAIAQ 66 (497)
Q Consensus 5 ~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~v~~g~l--Fval~G~~~dGh~fi~~A~~~ 66 (497)
..+...+.+.+++... ...+=-|.|..-+.|..|.. +|-+.+....|-+-+.+.+++
T Consensus 52 Tt~aRi~Ak~lnC~~~-----~~~~pcg~C~~C~~i~~g~~~d~iEiDaAS~~~vd~~r~l~~~ 110 (816)
T PRK07003 52 TTLSRIFAKALNCETG-----VTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER 110 (816)
T ss_pred HHHHHHHHHHHCCCCC-----CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999998678999-----9989787755578775588775478635543576899999986
No 253
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=51.37 E-value=16 Score=16.05 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99979989999999999827620022456543
Q gi|254781102|r 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 (497)
Q Consensus 92 ~i~V~d~~~aL~~la~~~~~~~~~~vIgITGT 123 (497)
...+.+...|+..++...+...-.++.-|-|+
T Consensus 96 ~~~~~si~~al~~l~~~~~~~~~e~iFVIGG~ 127 (512)
T PTZ00164 96 LLVVPDLEDALRLLARPLYNLSIEKIFIIGGS 127 (512)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 61568899999999756752688708998179
No 254
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=50.89 E-value=5.7 Score=19.02 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=18.7
Q ss_pred HCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 276200224565430--65200012333332
Q gi|254781102|r 110 YGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 110 ~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
|.-.+...+.|+|.| ||||==++++=++.
T Consensus 21 F~l~aGe~l~v~GpNG~GKTtLLR~LAGL~~ 51 (204)
T TIGR01189 21 FTLNAGEALQVEGPNGIGKTTLLRILAGLLR 51 (204)
T ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 4540782789860698735789999985058
No 255
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.86 E-value=17 Score=16.00 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=3.4
Q ss_pred HHHHHHHHHCC
Q ss_conf 88899999859
Q gi|254781102|r 57 HLFIPQAIAQG 67 (497)
Q Consensus 57 h~fi~~A~~~G 67 (497)
-+-++.|-++|
T Consensus 63 i~a~~~a~~~g 73 (126)
T cd05008 63 LAALRLAKEKG 73 (126)
T ss_pred HHHHHHHHHCC
T ss_conf 88999999829
No 256
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=50.75 E-value=4.4 Score=19.77 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=14.4
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHH
Q ss_conf 456543--0652000123333321
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQR 139 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~ 139 (497)
.-.||| .||||++++++..|.-
T Consensus 41 ~l~~g~rg~gkt~~ar~~ak~lnc 64 (705)
T PRK05648 41 YLFTGTRGVGKTTIARIIAKCLNC 64 (705)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 650078988898999999998677
No 257
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication.
Probab=50.65 E-value=6.8 Score=18.56 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 145444321122210010122343322211057788877520267676311
Q gi|254781102|r 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 (497)
Q Consensus 284 ~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~ 334 (497)
+..-...|+...-...|.+-..++|+-|+ +.+|..+|+|..-|.+
T Consensus 495 v~nASv~fD~Etl~PtY~ll~g~~G~S~A------F~iA~r~G~P~~iie~ 539 (834)
T TIGR01069 495 VENASVLFDEETLSPTYKLLFGVPGRSYA------FEIAQRLGIPSEIIEQ 539 (834)
T ss_pred CCHHHHHHCHHHCCCCCEEEECCCCCHHH------HHHHHHHCCCHHHHHH
T ss_conf 00377662334227431220037871068------8999984798889999
No 258
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=50.53 E-value=11 Score=17.27 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=67.2
Q ss_pred ECCCCCCCC-CEEEEECCCCC---CHHHHHHHHHHCCCEEEEECCCC-----CCCCCCCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 302314689-88998038876---76888999998598899984732-----2333432234797099979989999999
Q gi|254781102|r 35 SDSRHIQAG-WIFVAIVGNKE---DGHLFIPQAIAQGAEAIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLF 105 (497)
Q Consensus 35 ~DSr~v~~g-~lFval~G~~~---dGh~fi~~A~~~GA~~~i~~~~~-----~~~~~~~~~~~~~p~i~V~d~~~aL~~l 105 (497)
++|-.+.+| =|==|||-+.. .|-.=+-+++++.-+.--.-+++ ....+...... .+=..|+.+-..|
T Consensus 17 i~~eRL~kGLPC~kCLP~~~r~~~~GW~~vc~~Lr~~~TL~~~~K~~~~~~~~~k~f~~FF~~----~~G~~pws~Qk~W 92 (1843)
T TIGR01054 17 ISSERLEKGLPCEKCLPEEPRKAVKGWLKVCRALRKEKTLKAYLKEYCSLDEELKEFEEFFKK----AVGSEPWSIQKSW 92 (1843)
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHH
T ss_conf 778987357888645787677555217999999960587211215543378999999999999----7188843567999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHC-CCCCCCC
Q ss_conf 99982762002245654306520001233333210-2322222
Q gi|254781102|r 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-GLSSFQI 147 (497)
Q Consensus 106 a~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~-g~~~~~~ 147 (497)
|+....+.|--+||=|| .||||=--.++.-|... |.++..+
T Consensus 93 AKRv~~~~SFai~APTG-VGKttFG~~mslflA~kKGkR~y~i 134 (1843)
T TIGR01054 93 AKRVLKGDSFAIVAPTG-VGKTTFGLVMSLFLAKKKGKRSYII 134 (1843)
T ss_pred HHHHHCCCCEEEECCCC-CCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99964179648980588-7677999999999865429878999
No 259
>PRK08233 hypothetical protein; Provisional
Probab=50.53 E-value=5.6 Score=19.09 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=17.4
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 0224565430--6520001233333
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
..||||+|-. ||||.++-|..-|
T Consensus 3 p~IIgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8899996888678999999999974
No 260
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.36 E-value=5.4 Score=19.21 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=20.2
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..++||.|.| ||||.-.++.-++.
T Consensus 24 i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 84997999988999989999999964677
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=50.12 E-value=5.2 Score=19.31 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++|+-|.| ||||+-.+++-++..
T Consensus 47 i~~GEivgllG~NGaGKSTLlk~I~Gl~~P 76 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 859989999989986199999999679888
No 262
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=50.06 E-value=17 Score=15.92 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 97 ~lLGRVid~lG~P 109 (441)
T PRK08927 97 AWLGRVVNALGEP 109 (441)
T ss_pred CCCCCEECCCCCC
T ss_conf 6428787767111
No 263
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=49.94 E-value=8.7 Score=17.84 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 200224565430--6520001233--33321023
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
...+++-|||.| ||||.-.-++ .+|.+.|.
T Consensus 28 ~~~~~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~ 61 (218)
T cd03286 28 TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM 61 (218)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9740899989998873899999999999998288
No 264
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=49.81 E-value=17 Score=15.89 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC--CHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 67676311123443345521000135578602300037--868999974121100234440354
Q gi|254781102|r 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--TSNSLEMILKNIRTITSGRIIVVF 388 (497)
Q Consensus 327 i~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDyah--NP~s~~~aL~~l~~~~~~r~i~V~ 388 (497)
|..|+|++-...|.-.+.+.. --.||||.|. |+.|-.+.|++|-+-+ ++.+.||
T Consensus 99 Ik~dq~R~l~~~~~~~~~~~~-------~rVviI~~Ae~mn~~AANALLKtLEEPp-~~t~fiL 154 (216)
T TIGR00678 99 IKVDQVRELVEFLSLTPQESG-------RRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFIL 154 (216)
T ss_pred CCHHHHHHHHHHHHHCCCCCC-------CEEEEECCHHHCCHHHHHHHHHHEECCC-CCEEEEE
T ss_conf 872789999999860642147-------5179976732325898986510101279-8707988
No 265
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=49.72 E-value=6.7 Score=18.58 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=17.7
Q ss_pred EEEEECCCCCCCCCE--EEEECCCCCCHHHHHHHHHHC
Q ss_conf 024530231468988--998038876768889999985
Q gi|254781102|r 31 NEVSSDSRHIQAGWI--FVAIVGNKEDGHLFIPQAIAQ 66 (497)
Q Consensus 31 ~~i~~DSr~v~~g~l--Fval~G~~~dGh~fi~~A~~~ 66 (497)
-|.|..-+.|..|.. ++=+.+....|-+-+.+.+++
T Consensus 73 cg~c~~c~~i~~g~~~d~~eidaas~~~vd~~rel~~~ 110 (643)
T PRK07994 73 CGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 (643)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 87677689886589887588636777888999999984
No 266
>PRK13768 GTPase; Provisional
Probab=49.47 E-value=7.4 Score=18.31 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.5
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 456543--065200012333332102322222
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+-|.|. .||||-+.-+.+-|+..|+++..+
T Consensus 5 ~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vv 36 (253)
T PRK13768 5 VFFLGTAGSGKTTLVGALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99989999988999999999999769975999
No 267
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=49.33 E-value=5.7 Score=19.04 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=21.4
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++||.|.| ||||.-.++.-++..
T Consensus 23 i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p 52 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 869989999889999899999999568577
No 268
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=49.08 E-value=6.6 Score=18.62 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=20.6
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 2456543--0652000123333321023222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
+|.|.|- .||||++.+++.-|+-....+|
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG 32 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 7887358968647899999986398312020
No 269
>PRK00023 cmk cytidylate kinase; Provisional
Probab=48.90 E-value=6 Score=18.87 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 0224565430--65200012333332102322
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
..+|+|-|.. ||+|++..++.-|.-....+
T Consensus 4 ~iIIaIDGpagSGKST~ak~lA~~L~~~yldT 35 (225)
T PRK00023 4 APVIAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 97899658986787899999999939887641
No 270
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=48.84 E-value=18 Score=15.80 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHHCCCCC
Q ss_conf 456543--065200012333332102322
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~~g~~~ 144 (497)
.=-+|+ .||||++..+|..|.-. .+.
T Consensus 39 YLF~GpRGtGKTS~ARIfAKaLNC~-~~~ 66 (363)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALNCQ-GPD 66 (363)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCC-CCC
T ss_conf 4502859976355899999986588-787
No 271
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=48.78 E-value=5.6 Score=19.09 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++||.|-| ||||+-.++.-++..
T Consensus 31 i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~p 60 (269)
T PRK11831 31 VPRGKITAIMGPSGIGKTTLLRLIGGQIAP 60 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 879989999939997599999999679888
No 272
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=48.69 E-value=6.7 Score=18.56 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=23.1
Q ss_pred EEEEEE-EECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 245654-3065200012333332102322222
Q gi|254781102|r 117 ILAVTG-TSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITG-TnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
+|+=|. ..||||++--|...|++.|.++..+
T Consensus 5 lIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~F 36 (432)
T PRK13896 5 VLAGTSSGVGKTVATLAVLQALADAGYDVQPA 36 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99778999989999999999999784963766
No 273
>PRK03846 adenylylsulfate kinase; Provisional
Probab=48.60 E-value=9.9 Score=17.47 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 7620022456543--06520001233333210232222
Q gi|254781102|r 111 GKHPENILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 111 ~~~~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
..+...+|=+||= .||||.+..+..-|...|.++..
T Consensus 20 ~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~ 57 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYL 57 (198)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68998699987999998899999999999975997599
No 274
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=48.57 E-value=13 Score=16.82 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 98276200224565430--65200012333332102322222
Q gi|254781102|r 108 RLYGKHPENILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 108 ~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
.....+...+|=.||=. ||||.+..+...|.+.|+.+.+.
T Consensus 16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 887279985999646888878799999999999759758985
No 275
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.40 E-value=5.5 Score=19.15 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=21.1
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
++..++||.|.| ||||+..++.-++..
T Consensus 28 ~~GE~vaivG~nGsGKSTL~~~l~Gll~p 56 (276)
T PRK13650 28 KQGEWLSIIGHNGSGKSTTVRLIDGLLEA 56 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999998799999999738898
No 276
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=48.34 E-value=6.1 Score=18.84 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=13.7
Q ss_pred EEEECCCCCCCCCE--EEEECCCCCCHHHHHHHHHH
Q ss_conf 24530231468988--99803887676888999998
Q gi|254781102|r 32 EVSSDSRHIQAGWI--FVAIVGNKEDGHLFIPQAIA 65 (497)
Q Consensus 32 ~i~~DSr~v~~g~l--Fval~G~~~dGh~fi~~A~~ 65 (497)
|.|..-+.|..|.. ++-+.+...-|-+-+.+.++
T Consensus 74 g~C~~C~~i~~g~~~d~~EiDaAs~~~vdd~rel~~ 109 (717)
T PRK08853 74 GQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLD 109 (717)
T ss_pred CCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 887026767447877524540565678899999998
No 277
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=48.33 E-value=5.1 Score=19.33 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEEEEECCCEEHHHHHHHHHH
Q ss_conf 24565430652000123333321
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQR 139 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~ 139 (497)
++||.| .||||.+.-+++-|.+
T Consensus 3 lmGvaG-~GKs~~a~~l~~~lg~ 24 (175)
T TIGR01313 3 LMGVAG-SGKSTIASALAHRLGD 24 (175)
T ss_pred EECCCC-CCHHHHHHHHHHHHHH
T ss_conf 760278-6288999999998543
No 278
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=48.15 E-value=8 Score=18.09 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.8
Q ss_pred EEEEE--EECCCEEHHHHHHHHHHCC-CCCCCCC
Q ss_conf 45654--3065200012333332102-3222223
Q gi|254781102|r 118 LAVTG--TSGKSSVASFVQQICQRSG-LSSFQIG 148 (497)
Q Consensus 118 IgITG--TnGKTTt~~~l~~iL~~~g-~~~~~~g 148 (497)
|||-| ==||+||+.=+++.|...| +++-.+|
T Consensus 3 iAiYGKGGIGKSTT~~N~~AAla~~gdkkVl~~G 36 (278)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGDKKVLVVG 36 (278)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8886278867006888999999862495589972
No 279
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.82 E-value=6.5 Score=18.67 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=17.4
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 200224565430--6520001233333
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
++..+++|+|.| ||||.-.++.-++
T Consensus 23 ~~Ge~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799799998788999899999995884
No 280
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=47.68 E-value=7.3 Score=18.33 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.5
Q ss_pred EEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 45654--306520001233333210232222234
Q gi|254781102|r 118 LAVTG--TSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 118 IgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
|-+|| +.||||.+.-|..-|++.|+++..++.
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d 35 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD 35 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7985799996889999999999975993899780
No 281
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=47.61 E-value=19 Score=15.67 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 115 ~lLGRVvd~lG~P 127 (455)
T PRK07960 115 ALLGRVLDGSGKP 127 (455)
T ss_pred CCCCCEECCCCCC
T ss_conf 6306351899982
No 282
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=47.58 E-value=6.8 Score=18.52 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=22.1
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++|+-|-| |||||-.|+.-++..
T Consensus 28 V~~Gei~gllGpNGAGKTTli~~l~Gl~~p 57 (304)
T PRK13537 28 VQPGECFGLLGPNGAGKTTTLKMLLGLTHP 57 (304)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 869959999999897299999999779568
No 283
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=47.56 E-value=7.2 Score=18.38 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 899803887676888999998598899984
Q gi|254781102|r 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 (497)
Q Consensus 45 lFval~G~~~dGh~fi~~A~~~GA~~~i~~ 74 (497)
-||.--|.-++||.-+-....+-+-.+|++
T Consensus 23 g~VPTMG~LH~GHlsLi~~A~~~~d~vvvS 52 (512)
T PRK13477 23 GFVPTMGALHQGHLSLIRRARQENDVVLVS 52 (512)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 998897237589999999999869969999
No 284
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=47.29 E-value=8.5 Score=17.92 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCEEEEEEEE--CCCEEHHHHHH--HHHHCCCC
Q ss_conf 0224565430--65200012333--33210232
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQ--ICQRSGLS 143 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~--iL~~~g~~ 143 (497)
.+++-|||.| ||||.-..++. +|.+.|..
T Consensus 29 ~~~~iiTGpN~sGKSt~lkti~l~~~laq~G~~ 61 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF 61 (202)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 828999899887539999999999999983873
No 285
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=47.28 E-value=5.1 Score=19.35 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=25.6
Q ss_pred CEEEE---EEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 22456---5430652000123333321023222223
Q gi|254781102|r 116 NILAV---TGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 116 ~vIgI---TGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
++|.| -|-.||||.+-.++..|...|.++..+-
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD 37 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFE 37 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 379996189987699999999999997899599996
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.26 E-value=7.3 Score=18.33 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 2456543--0652000123333321023222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
-|+|||. .||||...-++..|+..|++++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9998679984589999999999985596651
No 287
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=47.20 E-value=18 Score=15.72 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCCEEEEEEE--ECCCEEHHHHHHHHHHCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0022456543--065200012333332102-------------3222223454433235544576753122111111
Q gi|254781102|r 114 PENILAVTGT--SGKSSVASFVQQICQRSG-------------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 (497)
Q Consensus 114 ~~~vIgITGT--nGKTTt~~~l~~iL~~~g-------------~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~ 175 (497)
..||.-+||= -||||++..+..+....+ .++.++..+|.-.-.. ...|--.+.++|++|-
T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl--~E~TG~~a~TIHRLlG 438 (769)
T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL--AEVTGLEALTIHRLLG 438 (769)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC--CCCCCCHHHHHHHHHC
T ss_conf 09489985778886168999999999871687755312456776488737743788851--1002621234778636
No 288
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=47.17 E-value=19 Score=15.63 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=4.2
Q ss_pred EEEECCCCCH
Q ss_conf 0230003786
Q gi|254781102|r 357 RIYVDYAHTS 366 (497)
Q Consensus 357 ~viiDyahNP 366 (497)
.++.|-..||
T Consensus 212 ~~v~D~~Y~P 221 (275)
T PRK00258 212 TVVYDMIYGP 221 (275)
T ss_pred CEEEEEEECC
T ss_conf 6699866579
No 289
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.08 E-value=5.8 Score=18.97 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..++|+.|-| ||||+..++.-++..
T Consensus 26 ~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p 56 (277)
T PRK13652 26 IAGRKQRIAVIGPNGAGKSTLFKHFNGILKP 56 (277)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989989999999994799999999669999
No 290
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=47.03 E-value=6.4 Score=18.70 Aligned_cols=27 Identities=15% Similarity=0.431 Sum_probs=20.3
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..+++|.|.| ||||.-.++.-++.
T Consensus 24 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 52 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87998999999999859999999976888
No 291
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=46.74 E-value=6.9 Score=18.50 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=21.9
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.+..++|+.|-| ||||+-.|+..+++.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~Gl~~p 57 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 28959999899999899999999679778
No 292
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=46.71 E-value=6.3 Score=18.76 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-.+..++||+|.| ||||.-.++.-++..
T Consensus 33 i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999989999999985899999999669999
No 293
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=46.64 E-value=8 Score=18.06 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=25.3
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 2456543065200012333332102322222
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
|-|-||| |||-|-..++.-|+.+|.++...
T Consensus 26 iaGATGT-GKTvTLq~lAE~~S~~GVPvf~a 55 (504)
T pfam05872 26 IAGATGT-GKTVTLQVLAESFSDAGVPVFLA 55 (504)
T ss_pred ECCCCCC-CHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 2265778-61789999999874549938871
No 294
>pfam03737 Methyltransf_6 Demethylmenaquinone methyltransferase. Members of this family are demethylmenaquinone methyltransferases that convert dimethylmenaquinone (DMK) to menaquinone (MK) in the final step of menaquinone biosynthesis. This region is also found at the C-terminus of the DlpA protein.
Probab=46.57 E-value=19 Score=15.57 Aligned_cols=25 Identities=28% Similarity=0.532 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 68999974121100234440354026654
Q gi|254781102|r 366 SNSLEMILKNIRTITSGRIIVVFGCGGDR 394 (497)
Q Consensus 366 P~s~~~aL~~l~~~~~~r~i~V~G~~Gdr 394 (497)
+..++.+|+.. .+|++++| -++|+.
T Consensus 46 ~~~~~~ai~~~---~~G~VlVi-d~~g~~ 70 (154)
T pfam03737 46 NGLVREVLDQA---GPGRVLVV-DGGGSL 70 (154)
T ss_pred CHHHHHHHHHC---CCCEEEEE-ECCCCC
T ss_conf 09999999656---98859999-899987
No 295
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=46.57 E-value=6.6 Score=18.62 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=19.6
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 76200224565430--6520001233333
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
.-.+..++||.|.| ||||.-.++.-++
T Consensus 19 ~v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~ 47 (245)
T PRK03695 19 EVRAGEILHLVGPNGAGKSTLLARMAGLL 47 (245)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99599899999789941999999984668
No 296
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=46.51 E-value=7.8 Score=18.16 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEE-ECCCC
Q ss_conf 6899997412110023444035402665460046899999986198999-90887
Q gi|254781102|r 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN 419 (497)
Q Consensus 366 P~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi-~t~d~ 419 (497)
|..-+..++.++++..++.+++. ++|.. ..+.||.+| +|.+|
T Consensus 150 ~~~~~~i~~~l~~l~~~~t~IiI--------TH~~~----~i~~AD~Ii~v~m~~ 192 (197)
T cd03278 150 DANVERFARLLKEFSKETQFIVI--------THRKG----TMEAADRLYGVTMQE 192 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE--------ECCHH----HHHHCCEEEEEEECC
T ss_conf 89999999999998569989999--------84999----998589999998379
No 297
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=46.48 E-value=13 Score=16.75 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=20.2
Q ss_pred CCCCCCCCEEECCCCCCCCCCC----CHHHHHHHHHHHC-CCCHHHHHHHH
Q ss_conf 2112221001012234332221----1057788877520-26767631112
Q gi|254781102|r 291 VTISVEGKDFDFLFPLPGEFQV----YNALVAAGLCIAI-GIDSALVLEHL 336 (497)
Q Consensus 291 ~~i~~~~~~~~~~l~l~G~hni----~NalaAia~a~~l-Gi~~~~i~~~L 336 (497)
+.+..-..++++. -||+||= .|++...|.+..- =.+-++..+.+
T Consensus 272 lal~L~kPe~D~W--~PGEHNGTFRGNNlAFVtA~aAL~~yW~Dd~f~~~v 320 (413)
T TIGR02407 272 LALVLIKPELDVW--KPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAV 320 (413)
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8999735456746--788778864665278999999999848962689999
No 298
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=46.30 E-value=12 Score=16.96 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC----CEEEEC------CCCCHHHHHHH
Q ss_conf 11057788877520267676311123443345521000135578----602300------03786899997
Q gi|254781102|r 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVD------YAHTSNSLEMI 372 (497)
Q Consensus 312 i~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~----~~viiD------yahNP~s~~~a 372 (497)
...+.--++-+.+--++++++.+-+++-..++.-++.++...+. .-|+.| |+-|-++++..
T Consensus 206 ~~~~~~~la~~~e~~lD~~kl~~i~~~~~~~~~~~~~~~~~~~~~~~kiava~D~aFnFYY~dNld~L~~~ 276 (464)
T TIGR00379 206 IQQILDWLAEVVEKYLDLDKLLEIAEKARELDSEMELLWEDENKKYVKIAVARDQAFNFYYQDNLDALEEN 276 (464)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 99999999999997449779888740678777752101234567723789997332140357789999747
No 299
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=46.29 E-value=9.2 Score=17.70 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=24.8
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 2456543--0652000123333321023222223
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
+|+|-|- .||||.+.+++.-|+..|.++....
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999899899999999999999997799389986
No 300
>PRK00698 tmk thymidylate kinase; Validated
Probab=46.25 E-value=9.5 Score=17.58 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=25.9
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 022456543--06520001233333210232222
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
.++|+|-|. .||||-+.+++.-|...|..+..
T Consensus 3 G~fIviEGiDGsGKsTq~~~L~~~L~~~g~~v~~ 36 (204)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLAERLEEQGRDVVF 36 (204)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3199998899998999999999999967997899
No 301
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=46.23 E-value=9.8 Score=17.51 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCEEEEEEEE--CCCEEHHHH--HHHHHHCCCC
Q ss_conf 0224565430--652000123--3333210232
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFV--QQICQRSGLS 143 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l--~~iL~~~g~~ 143 (497)
.+++-|||.| ||||--..+ ..+|.+.|..
T Consensus 28 ~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G~~ 60 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP 60 (200)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 339999889877509999999999999997778
No 302
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.20 E-value=6.9 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++|+-|.| ||||+-.++.-++..
T Consensus 23 v~~Gei~gllG~NGaGKTTll~~i~Gl~~p 52 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 879959999989998499999999600266
No 303
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=46.19 E-value=6.1 Score=18.86 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=21.0
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-.+..++|+.|-| ||||.-.++.-++..
T Consensus 34 ~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~p 64 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8879989999989988899999999658988
No 304
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=45.98 E-value=8.3 Score=17.99 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9799899999999998276200224565430--65200012333332
Q gi|254781102|r 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 94 ~V~d~~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.|.|++.-|.. .+.+..+.++.-.||-. |||||..+|+.-|.
T Consensus 27 KV~eV~~WL~~---~~~~~~~~~iLlLtGPaG~GKTTTI~lLAkeLG 70 (490)
T pfam03215 27 KIAEVDHWLKA---VFLESNKQLILLLTGPSGCGKSTTVKVLSKELG 70 (490)
T ss_pred HHHHHHHHHHH---HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 39999999999---854777731899879899889999999999759
No 305
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=45.98 E-value=20 Score=15.51 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=9.7
Q ss_pred ECCCEEHHHHHHHHHHC
Q ss_conf 06520001233333210
Q gi|254781102|r 124 SGKSSVASFVQQICQRS 140 (497)
Q Consensus 124 nGKTTt~~~l~~iL~~~ 140 (497)
.||||.-.++.+.+...
T Consensus 27 vGKT~Ll~~i~~~~~~~ 43 (249)
T cd01128 27 AGKTTLLQSIANAITKN 43 (249)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 88999999999999985
No 306
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=45.86 E-value=6.8 Score=18.52 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHHCCC
Q ss_conf 200224565430--652000123333321023
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQRSGL 142 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~~g~ 142 (497)
.+..++||.|-| ||||+..++.-++...+.
T Consensus 40 ~~GEilgivGeSGsGKSTl~~~i~gll~~~~~ 71 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGR 71 (330)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 89989999868987799999999768888883
No 307
>KOG1970 consensus
Probab=45.84 E-value=12 Score=16.89 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 979989999999999827620022456543--065200012333332
Q gi|254781102|r 94 VVDNTRKFLSLFASRLYGKHPENILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 94 ~V~d~~~aL~~la~~~~~~~~~~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
.+++....|. -...+......+|.-+||- +|||||...|+..|.
T Consensus 90 KI~eVk~WL~-~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970 90 KISEVKQWLK-QVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHHHHHHHHH-HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 4899999999-999745366760799857988871319999998648
No 308
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=45.46 E-value=7.6 Score=18.24 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..++|+-|-| ||||+-.|+.-++..
T Consensus 24 ~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p 54 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8859819999999998199999999679568
No 309
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=45.45 E-value=20 Score=15.46 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHCCEEEECCCCCCCCCHHHHHHHHHHC
Q ss_conf 99986198999908879898989999999834
Q gi|254781102|r 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 (497)
Q Consensus 404 ~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g 435 (497)
++....||++|+-----+++||..-+..+.+.
T Consensus 196 ~Ai~~GAD~iVVGR~I~~s~dP~~a~~~I~~e 227 (231)
T PRK00230 196 QAIAAGSDYIVVGRPITQAEDPAAALEAILAE 227 (231)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99987999999898456899999999999999
No 310
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=45.31 E-value=9.7 Score=17.53 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCCEEEEEEEE--CCCEEHHHHH--HHHHHCCCC
Q ss_conf 00224565430--6520001233--333210232
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQ--QICQRSGLS 143 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~--~iL~~~g~~ 143 (497)
..+++-|||.| ||||.-..++ .+|.+.|..
T Consensus 29 ~~~~~iiTGpN~sGKSt~Lk~igl~~ilaq~G~~ 62 (216)
T cd03284 29 ERQILLITGPNMAGKSTYLRQVALIALLAQIGSF 62 (216)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 8459999899877459999999999999986875
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.24 E-value=6.7 Score=18.59 Aligned_cols=26 Identities=12% Similarity=0.424 Sum_probs=20.1
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 00224565430--652000123333321
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+..++||.|-| ||||.-.+++-++..
T Consensus 24 ~GEiv~liGpNGaGKSTLlk~l~Gll~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 7989999979997699999999778788
No 312
>pfam00920 ILVD_EDD Dehydratase family.
Probab=45.19 E-value=20 Score=15.44 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.4
Q ss_pred EEEEEEECCCEEHHHHHHH
Q ss_conf 4565430652000123333
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQI 136 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~i 136 (497)
+-..|++-||+-..|++.+
T Consensus 83 ~V~l~gCDK~~Pg~lMaaa 101 (521)
T pfam00920 83 LVLLGGCDKTVPGMLMAAA 101 (521)
T ss_pred EEEECCCCCCCHHHHHHHH
T ss_conf 8995638985099999998
No 313
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=45.13 E-value=20 Score=15.43 Aligned_cols=107 Identities=25% Similarity=0.333 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 0577888775202676763111--23443345521000135578602300037868999974121100234440354026
Q gi|254781102|r 314 NALVAAGLCIAIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 (497)
Q Consensus 314 NalaAia~a~~lGi~~~~i~~~--L~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~ 391 (497)
-...|+++|+.+|++...-.+| |.....-.=| |.|. +|-|=|=++|.-=-+.+++|+ +.|.+++.=|.|
T Consensus 527 S~~TAv~IA~~lG~~~~~~~~G~~Ld~md~~~L~-~~v~------~v~vFaRasP~hKmkIv~aLq--~~GdVVAMTGDG 597 (856)
T TIGR01522 527 SEETAVSIARRLGMPVKSSKEGEKLDEMDDQQLS-EVVD------KVAVFARASPEHKMKIVKALQ--KRGDVVAMTGDG 597 (856)
T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHH-HHHC------CCEEEEECCCHHHHHHHHHHH--HCCCEEEECCCC
T ss_conf 2899999987728657998541477631688898-6523------035763078067899999972--089889886879
Q ss_pred CCCCCC--HHH----HHHH----HHHHHCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 654600--468----9999----99861989999088798989899999998347
Q gi|254781102|r 392 GDRDQG--KRP----IMGK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 (497)
Q Consensus 392 Gdrd~~--kr~----~mg~----~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~ 436 (497)
=+ |.- |=+ -||| +|=+-||. |||+| |++.|+.+|.+|-
T Consensus 598 VN-DApALKlADIGvAMG~~GTDVAKEAADM-iLtDD-----dF~TILSAiEEGK 645 (856)
T TIGR01522 598 VN-DAPALKLADIGVAMGRTGTDVAKEAADM-ILTDD-----DFATILSAIEEGK 645 (856)
T ss_pred CC-HHHHHHHHHCCCCCCCCCCCHHHHHCCC-CEECC-----CHHHHHHHHHCCC
T ss_conf 55-1777405312211679985166552474-21157-----6466787765177
No 314
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=45.11 E-value=6.7 Score=18.60 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=20.9
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..++||.|.| ||||...++.-++.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 86998999999999869999999972898
No 315
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=44.92 E-value=6.1 Score=18.86 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=25.7
Q ss_pred CEEEEE--EEECCCEEHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 224565--43065200012333332102322222345
Q gi|254781102|r 116 NILAVT--GTSGKSSVASFVQQICQRSGLSSFQIGPT 150 (497)
Q Consensus 116 ~vIgIT--GTnGKTTt~~~l~~iL~~~g~~~~~~g~~ 150 (497)
+++-+| |-.||||++.-++--|.+.|.++-.+.|.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7999936885458999999999999759907999848
No 316
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=44.84 E-value=11 Score=17.23 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCEEEEEEEE--CCCEEHHHHH--HHHHHCCCC
Q ss_conf 00224565430--6520001233--333210232
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQ--QICQRSGLS 143 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~--~iL~~~g~~ 143 (497)
..+++-|||.| ||||.-..++ .+|.+.|..
T Consensus 28 ~~~~~iITGpN~gGKSt~Lktigl~~ilAq~G~~ 61 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF 61 (204)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 7259999899988719999999999999996891
No 317
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=44.80 E-value=21 Score=15.40 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 557860230003786899997412110023444035402665
Q gi|254781102|r 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 (497)
Q Consensus 352 ~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gd 393 (497)
.+++.-+++|..-+|.++..+++.++ +.|| ++++|..+.
T Consensus 229 ~~~G~Dvvid~~G~~~~~~~~~~~l~--~gG~-vv~~G~~~~ 267 (341)
T PRK05396 229 MTEGFDVGLEMSGAPSAFRQMLDAMN--HGGR-IAMLGIPPG 267 (341)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH--CCCE-EEEEECCCC
T ss_conf 89997699987898999999999863--5989-999955799
No 318
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=44.79 E-value=10 Score=17.46 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=19.6
Q ss_pred CCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 0224565430--6520001233--33321023
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
.+++-|||.| ||||.-..++ .+|.+.|.
T Consensus 42 ~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G~ 73 (234)
T pfam00488 42 SRILLITGPNMGGKSTYLRQVALIVIMAQIGS 73 (234)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 16999978877761999999999999998368
No 319
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=44.71 E-value=11 Score=17.30 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 022456543--06520001233333210232222
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
...|+|-|- .||||...+++..|+..|.++..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~ 36 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 6299997888898899999999999982980799
No 320
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=44.67 E-value=20 Score=15.49 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=34.8
Q ss_pred CCCCEEEEEE-----CCCCCCCCCEEEE----ECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC-----CCCCCCCCC
Q ss_conf 5743002453-----0231468988998----0388767688899999859889998473223334-----322347970
Q gi|254781102|r 26 RERKINEVSS-----DSRHIQAGWIFVA----IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-----SATIRSNTP 91 (497)
Q Consensus 26 ~d~~i~~i~~-----DSr~v~~g~lFva----l~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~-----~~~~~~~~p 91 (497)
-|.+|+.+.+ =++-+++|.+.+. ++.....=.+|+.+-.++|+++++.......+.. ..+...+.|
T Consensus 21 L~r~V~~v~i~E~pd~~~~l~~gElvlTtg~~~~~~~~~~~~~i~~L~~~g~agL~i~~g~~~~~iP~~~i~~a~~~~~P 100 (122)
T pfam07905 21 LDRPVRWVHVSELPDISPWLRGGELLLTTGYGLKDDPEALREFVRELAEAGAAGLGIKTGRYIPEIPEELIAAANRLGLP 100 (122)
T ss_pred CCCCEEEEEEECCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf 79968788976267988963698599972554479999999999999978964999942555466999999999974997
Q ss_pred EEEECCH
Q ss_conf 9997998
Q gi|254781102|r 92 ILVVDNT 98 (497)
Q Consensus 92 ~i~V~d~ 98 (497)
++.++..
T Consensus 101 li~iP~~ 107 (122)
T pfam07905 101 LIELPRE 107 (122)
T ss_pred EEEECCC
T ss_conf 7994597
No 321
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=44.64 E-value=8.2 Score=18.01 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEEEEE--CCCEEHHHHH--HHHHHCCCC
Q ss_conf 24565430--6520001233--333210232
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQ--QICQRSGLS 143 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~--~iL~~~g~~ 143 (497)
|+-|||.| ||||.-..++ .+|.+.|..
T Consensus 1 v~iiTGpN~sGKSt~lk~i~l~~~laq~G~~ 31 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSF 31 (185)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9899799988489999999999999997888
No 322
>PRK09099 type III secretion system ATPase; Provisional
Probab=44.64 E-value=21 Score=15.38 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 12333332102322
Q gi|254781102|r 131 SFVQQICQRSGLSS 144 (497)
Q Consensus 131 ~~l~~iL~~~g~~~ 144 (497)
.|+..++...|.+.
T Consensus 103 ~lLGRVvD~lG~Pl 116 (441)
T PRK09099 103 ALLGRVIDGLGEPI 116 (441)
T ss_pred CCCCCEECCCCCCC
T ss_conf 41488856776556
No 323
>PRK13544 consensus
Probab=44.52 E-value=7.5 Score=18.28 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=29.3
Q ss_pred CEEEEC--CCC-CHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
Q ss_conf 602300--037-8689999741211002-344403540266546004689999998619899990
Q gi|254781102|r 356 GRIYVD--YAH-TSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 (497)
Q Consensus 356 ~~viiD--yah-NP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t 416 (497)
..++.| .++ .|.+.+...+.++... .++ ++|+ +.-| + +.+...||+|.+-
T Consensus 146 ~illLDEPt~gLD~~s~~~i~~~i~~~~~~g~-~vIi-~sHd--------~-~e~~~~cd~i~l~ 199 (208)
T PRK13544 146 NVWIIDEPFANLDSATKELILELILTRLEQNG-IVII-SDHS--------K-TETYGECQVINLE 199 (208)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-EEEE-ECCC--------H-HHHHHHCCEEEEC
T ss_conf 99999798666899999999999999986899-9999-8699--------9-9999768999803
No 324
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=44.12 E-value=7.9 Score=18.10 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=17.7
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHH
Q ss_conf 76200224565430--65200012333
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQ 135 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~ 135 (497)
.-++..++||.|.| ||||...++.-
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLl~~i~G 49 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 984997999999999999999999837
No 325
>PRK04262 hypothetical protein; Provisional
Probab=43.85 E-value=21 Score=15.30 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 6899997412110023444035402
Q gi|254781102|r 366 SNSLEMILKNIRTITSGRIIVVFGC 390 (497)
Q Consensus 366 P~s~~~aL~~l~~~~~~r~i~V~G~ 390 (497)
|-++..+|+.. ++|.+|+++|-
T Consensus 274 plaL~~~l~~~---k~Gd~Ill~~f 295 (346)
T PRK04262 274 LLGLAAVLDVA---KPGDRILVVSF 295 (346)
T ss_pred HHHHHHHHHCC---CCCCEEEEEEE
T ss_conf 99999998438---99899999985
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=43.65 E-value=7.3 Score=18.32 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=20.0
Q ss_pred CCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 0224565430--652000123333321
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
..++||.|.| ||||.-.+|+-++..
T Consensus 26 GEi~gLiGpNGaGKSTLlk~i~Gll~P 52 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 809999899997099999999679868
No 327
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=43.65 E-value=6.4 Score=18.71 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=25.9
Q ss_pred EEECCCEEHHHHHHHHHHC--CCCCCCCCCCC
Q ss_conf 4306520001233333210--23222223454
Q gi|254781102|r 122 GTSGKSSVASFVQQICQRS--GLSSFQIGPTS 151 (497)
Q Consensus 122 GTnGKTTt~~~l~~iL~~~--g~~~~~~g~~~ 151 (497)
|=.||||.+.-++==|... |+++-+++|.-
T Consensus 6 GGVGKTt~SaAtA~~lAe~qPGkkvLl~STDP 37 (330)
T TIGR00345 6 GGVGKTTISAATAIRLAEQQPGKKVLLVSTDP 37 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 88238889999999998518997799984086
No 328
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=43.33 E-value=16 Score=16.19 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 022456543--06520001233333---210232222234544332355445---76753122111111101122333
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQIC---QRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTH 184 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL---~~~g~~~~~~g~~~~~~~~~~~~~---~TtP~~~~l~~~l~~~~~~g~~~ 184 (497)
.+||.|-|- +||||--..|+.-= .++|--+..+|-... ...... +-||. |+.|..|+.+|...
T Consensus 117 ~PvVtimGHVDHGKTsLLD~iR~t~V~~~EaGGITQhIGA~~v---~~~~~~itFiDTPG----HeAFt~mR~RGa~v 187 (610)
T PRK12312 117 PPIVTIMGHVDHGKTTLLDTIRKTNVVASEAGGITQHIGAYQV---EYQGKKITFIDTPG----HEAFTEMRARGAKV 187 (610)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECEEEE---EECCCEEEEECCCC----HHHHHHHHHCCCCC
T ss_conf 9989996772577225889985486413467766440044999---86797689972896----79899999707765
No 329
>PRK05541 adenylylsulfate kinase; Provisional
Probab=43.28 E-value=11 Score=17.26 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.3
Q ss_pred CCCCCEEEEEEE--ECCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 620022456543--065200012333332102322222
Q gi|254781102|r 112 KHPENILAVTGT--SGKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 112 ~~~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
++..-+|=+||= .||||.+..+..-|...|.++..+
T Consensus 4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~L 41 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88867999789999989999999999999759977998
No 330
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=43.21 E-value=22 Score=15.24 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=18.4
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHH
Q ss_conf 99799899999999998276200224565430652000123333321
Q gi|254781102|r 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 (497)
Q Consensus 93 i~V~d~~~aL~~la~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~ 139 (497)
-.|+|....+.+.-.....+ ..+|-+||--|.|.- .++..++.+
T Consensus 37 ~~v~Dd~~~i~~~l~~~~~~--~DliittGG~g~g~~-D~t~~al~~ 80 (140)
T pfam00994 37 GIVPDDPEAIKEALAAAADE--ADVVITTGGTGPGPD-DVTPEALAE 80 (140)
T ss_pred EEECCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCC-CCHHHHHHH
T ss_conf 89788999999999997326--999998788778989-855999999
No 331
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=43.19 E-value=22 Score=15.24 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 899997412110023444035402
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVVFGC 390 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V~G~ 390 (497)
..++..|..-+++ ..+|.++|.
T Consensus 355 ~~~~~~la~y~el--~diiai~G~ 376 (449)
T TIGR03305 355 REVRQTLAQYEEL--KDIIAMLGL 376 (449)
T ss_pred HHHHHHHHHHHHH--HHHHHHHCC
T ss_conf 9999999988999--999987485
No 332
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.16 E-value=8.6 Score=17.87 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++||.|.| ||||...++.-+|..
T Consensus 31 I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 31 IPRGSWTALIGHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999999998799999999640378
No 333
>PRK10867 signal recognition particle protein; Provisional
Probab=43.14 E-value=15 Score=16.37 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=22.1
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHH-CCCCCCCC
Q ss_conf 224565430--652000123333321-02322222
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQR-SGLSSFQI 147 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~-~g~~~~~~ 147 (497)
.+|-+.|-+ |||||+.=++..|.. .++++..+
T Consensus 101 ~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllv 135 (453)
T PRK10867 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (453)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 69999746888518589999999997389837985
No 334
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.10 E-value=6.8 Score=18.54 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=28.7
Q ss_pred CCCCEEEECCHHHHHHHH---HHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 797099979989999999---9998276200224565430--65200012333332
Q gi|254781102|r 88 SNTPILVVDNTRKFLSLF---ASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 88 ~~~p~i~V~d~~~aL~~l---a~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
..-|.+.+++.......- -..=+.-.+..+++|.|.| ||||.-.+++-++.
T Consensus 7 ~~~P~L~~~~ls~~~~~~~vl~~isf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEEEEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99975999827999799999826388981898999999999879999999976977
No 335
>TIGR02130 dapB_plant dihydrodipicolinate reductase; InterPro: IPR011859 This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome..
Probab=43.10 E-value=20 Score=15.51 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=8.5
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 688899999859889998
Q gi|254781102|r 56 GHLFIPQAIAQGAEAIVV 73 (497)
Q Consensus 56 Gh~fi~~A~~~GA~~~i~ 73 (497)
|..-++.|.++|-..+=+
T Consensus 13 G~~V~~~~~~~G~~~VP~ 30 (275)
T TIGR02130 13 GKIVIKAAVAAGLELVPY 30 (275)
T ss_pred HHHHHHHHHHCCCEEECC
T ss_conf 688887775478434302
No 336
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=43.07 E-value=10 Score=17.36 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=21.6
Q ss_pred CEEEEE---EEECCCEEHHHHHHH-HHHCCCCCCC
Q ss_conf 224565---430652000123333-3210232222
Q gi|254781102|r 116 NILAVT---GTSGKSSVASFVQQI-CQRSGLSSFQ 146 (497)
Q Consensus 116 ~vIgIT---GTnGKTTt~~~l~~i-L~~~g~~~~~ 146 (497)
++|+|+ |-.||||++.-+..+ ++..|+++..
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~ 37 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLL 37 (262)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999845887568989986999999648976999
No 337
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=42.88 E-value=22 Score=15.21 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 12333332102322
Q gi|254781102|r 131 SFVQQICQRSGLSS 144 (497)
Q Consensus 131 ~~l~~iL~~~g~~~ 144 (497)
.|+..++...|.+.
T Consensus 98 ~lLGRVvD~lG~Pl 111 (435)
T PRK08472 98 NLLGRVVDPLGRPI 111 (435)
T ss_pred CCCCCEECCCCCCC
T ss_conf 40278877788645
No 338
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=42.84 E-value=11 Score=17.26 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=19.3
Q ss_pred CCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 0224565430--6520001233--33321023
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
.+++-|||.| ||||.-..++ .+|.+.|.
T Consensus 25 ~~~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G~ 56 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGA 56 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 85899989999865999999999999999689
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=42.70 E-value=13 Score=16.65 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=11.8
Q ss_pred EEEEEE--ECCCEEHHHHHHHH
Q ss_conf 456543--06520001233333
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQIC 137 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL 137 (497)
|-|+|. .||||+-..+.+.+
T Consensus 28 IlIsG~tGSGKTTll~al~~~i 49 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999998999999999613
No 340
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=42.64 E-value=22 Score=15.18 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=9.3
Q ss_pred EECCCCC-CHHHHHHHHHHCC
Q ss_conf 8038876-7688899999859
Q gi|254781102|r 48 AIVGNKE-DGHLFIPQAIAQG 67 (497)
Q Consensus 48 al~G~~~-dGh~fi~~A~~~G 67 (497)
++-|++. +.++|+++-.+.|
T Consensus 48 ~~iGer~~ev~~~~~~~~~~~ 68 (213)
T pfam00006 48 VLIGERGREVAEFIEELLGEG 68 (213)
T ss_pred EECCCCHHHHHHHHHHHHCCC
T ss_conf 813777799999999752137
No 341
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=42.57 E-value=8.2 Score=18.00 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 9999999998276200224565430--652000123333321
Q gi|254781102|r 100 KFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 100 ~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+||..+. +.-+...++||.|.| ||||...++.-++..
T Consensus 21 ~AL~dvs---l~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~P 59 (304)
T PRK13651 21 KALDGVS---TEINQGEFIAIIGQTGSGKTTFIEHLNALLLP 59 (304)
T ss_pred EEEECEE---EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 6863405---79859989999879998599999999669998
No 342
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=42.49 E-value=13 Score=16.78 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 200224565430--6520001233--33321023
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
...++.-|||.| ||||.-..++ .+|.+.|.
T Consensus 28 ~~~~i~iiTGpN~sGKSt~lk~i~l~~~laq~G~ 61 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC 61 (222)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9825999989998871899999999999998687
No 343
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=42.40 E-value=8.2 Score=18.02 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=17.6
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++...+||+|.+ ||||...++.-++.
T Consensus 25 i~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 85999999999999809999999966666
No 344
>PRK04195 replication factor C large subunit; Provisional
Probab=42.40 E-value=18 Score=15.84 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 9989999999999827-6200224565430--6520001233333
Q gi|254781102|r 96 DNTRKFLSLFASRLYG-KHPENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 96 ~d~~~aL~~la~~~~~-~~~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
+...+.|..|...|-. .++.+.+-++|.. ||||+++.++.-+
T Consensus 20 ~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~ 64 (403)
T PRK04195 20 EKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY 64 (403)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999999999987399657469988939987999999999984
No 345
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=42.29 E-value=23 Score=15.15 Aligned_cols=26 Identities=4% Similarity=0.020 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 33556555743002453023146898
Q gi|254781102|r 19 SIFPMQWRERKINEVSSDSRHIQAGW 44 (497)
Q Consensus 19 ~~~~~~~~d~~i~~i~~DSr~v~~g~ 44 (497)
......+.+.++-||+.-.-++.|+.
T Consensus 33 G~~ded~~~KP~IgI~ns~se~~Pc~ 58 (577)
T PRK13016 33 GYAHEDFDGKPVIAIINTWSDINPCH 58 (577)
T ss_pred CCCHHHHCCCCEEEEEECCCCCCCCH
T ss_conf 99968944799799970546775706
No 346
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=42.27 E-value=8.6 Score=17.87 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=19.4
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.+..++||-|-| ||||.-.++.-++..
T Consensus 31 ~~Ge~~~ilGpnGsGKSTLl~~i~G~~~~ 59 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEG 59 (226)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 18809999989996099999999678978
No 347
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.23 E-value=7.3 Score=18.33 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9999999998276200224565430--65200012333332
Q gi|254781102|r 100 KFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 100 ~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.||..+. +.-.+..++||.|.| ||||...++.-++.
T Consensus 21 ~aL~~is---l~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~ 58 (287)
T PRK13637 21 KALDNVN---IEIEDGEFVALIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEECEE---EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 1753207---6987998999999999399999999973998
No 348
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=42.17 E-value=23 Score=15.14 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=65.6
Q ss_pred HHHHHHHHHHCCCCCCEE--EEEEEECCCEEHHHHHHHHHHCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 999999998276200224--565430652000123333321023222-----------2234544332355445767531
Q gi|254781102|r 101 FLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSF-----------QIGPTSTISSFAQDNRLTTPSP 167 (497)
Q Consensus 101 aL~~la~~~~~~~~~~vI--gITGTnGKTTt~~~l~~iL~~~g~~~~-----------~~g~~~~~~~~~~~~~~TtP~~ 167 (497)
|.+.|-+..-.=+|++|| |==| .||||.+++. |++..+.-. +=||+-.|.+... |-|--
T Consensus 163 AI~aLlaK~aSPfPQHiiLYGPPG-VGKTTaARl~---LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREv----TNPLL 234 (616)
T TIGR02903 163 AIKALLAKLASPFPQHIILYGPPG-VGKTTAARLA---LEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREV----TNPLL 234 (616)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCC-CCHHHHHHHH---HHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCC----CCCCC
T ss_conf 999999763188866078557338-8478999998---762136874476113785751576266774101----47767
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCC-----CCCCCHHHHHHHHHH-HHHHHCCCC
Q ss_conf 22111111101122333335667666555431043-21211123215455-----432110112234554-210000001
Q gi|254781102|r 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDH-----IDYHQTQQAYFNAKM-RLFEELLPK 240 (497)
Q Consensus 168 ~~l~~~l~~~~~~g~~~~vlEvSS~gl~~~rl~~i-~~diaviTNI~~dH-----Ld~~gs~e~y~~aK~-~If~~~~~~ 240 (497)
=++|--.. +|..-=.-|+ |+ .|..+.+|. +| +|--|-++-..+.|+ +.++...-.
T Consensus 235 GSVHDPIY----QGa~RDLAE~-----------GvPEPk~GLVT~---AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~ 296 (616)
T TIGR02903 235 GSVHDPIY----QGARRDLAET-----------GVPEPKLGLVTD---AHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 296 (616)
T ss_pred CCCCCCCC----CCCCHHHCCC-----------CCCCCCCCCCCC---CCCCEEEEECHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 76257655----6764011047-----------879898987100---47756765021122278763244432264366
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCC--CCCCCCC
Q ss_conf 223211125420001222102356--5322222
Q gi|254781102|r 241 ESPAIIYADDAYSKEVMKRAHNAG--CRVLSVG 271 (497)
Q Consensus 241 ~~~~ViN~Dd~~~~~l~~~~~~~~--~~~~~~g 271 (497)
-...-+--|||...+.+++.-+.+ +.++-.|
T Consensus 297 F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIG 329 (616)
T TIGR02903 297 FSSSYYDPDDENVPKYIKKLFEEGAPADFVLIG 329 (616)
T ss_pred EEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEC
T ss_conf 532124875378655888852268882568726
No 349
>PRK13542 consensus
Probab=42.17 E-value=8.5 Score=17.91 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCCEEEECCHHHHHHH---HHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9709997998999999---99998276200224565430--65200012333332
Q gi|254781102|r 89 NTPILVVDNTRKFLSL---FASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 89 ~~p~i~V~d~~~aL~~---la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-|.+.++|....... +-.-=+.-.+..+++|.|-| ||||.-.++.-++.
T Consensus 15 ~~PlLe~~~ls~~~g~~~il~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~ 69 (224)
T PRK13542 15 ADPVLEARELGFSRGGRAVFRGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLMP 69 (224)
T ss_pred CCCEEEEEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7747999626999999998846167875997999999999999999999957978
No 350
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=41.99 E-value=8.2 Score=18.02 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=21.4
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-.+..++||.|.+ ||||...++..++..
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p 66 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9829999999999998499999999645467
No 351
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=41.92 E-value=21 Score=15.39 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=39.6
Q ss_pred EECCCCCHHHHHHHHHHHHH-CCCCCCCEEEECC----CCCCCCHHHHHHHHHHHHCCE-----EEE-CCCCCCCCCH-H
Q ss_conf 30003786899997412110-0234440354026----654600468999999861989-----999-0887989898-9
Q gi|254781102|r 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADI-----AIV-TDDNPRSEDP-E 426 (497)
Q Consensus 359 iiDyahNP~s~~~aL~~l~~-~~~~r~i~V~G~~----Gdrd~~kr~~mg~~a~~~ad~-----vi~-t~d~~r~e~~-~ 426 (497)
=+|+..+|+.|+.-+-.|-. ..+.+-++|||.| |..|. .=++..+.|+. -.| -.+.||+|.- +
T Consensus 61 T~~~GrTP~e~KdFiaEl~~liGKP~nvaiFGTGeTQwGG~d~-----yCgAVdr~a~ffgss~P~LkIEQ~Phgeqd~r 135 (145)
T TIGR01754 61 TVERGRTPDEMKDFIAELAVLIGKPKNVAIFGTGETQWGGDDY-----YCGAVDRLAKFFGSSYPVLKIEQMPHGEQDVR 135 (145)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC-----CHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 2357899666899999999983699824886588755288654-----02478887865046888002320888631367
Q ss_pred HHH
Q ss_conf 999
Q gi|254781102|r 427 KIR 429 (497)
Q Consensus 427 ~I~ 429 (497)
.|.
T Consensus 136 ai~ 138 (145)
T TIGR01754 136 AID 138 (145)
T ss_pred HHH
T ss_conf 899
No 352
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=41.88 E-value=9 Score=17.74 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=29.1
Q ss_pred EEEEC--C-CCCHHHHHHHHHHHHHCCC--CCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 02300--0-3786899997412110023--444035402665460046899999986198999908
Q gi|254781102|r 357 RIYVD--Y-AHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 357 ~viiD--y-ahNP~s~~~aL~~l~~~~~--~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.++.| . +=.|.+.+...+.++++.. ++-|++. .- .| +.+.++||++++-.
T Consensus 174 lllLDEPt~gLD~~~~~~i~~~l~~l~~~~g~till~--tH--------~l-~ev~~~~Drv~vl~ 228 (236)
T cd03267 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT--SH--------YM-KDIEALARRVLVID 228 (236)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--CC--------CH-HHHHHHCCEEEEEE
T ss_conf 9999798768899999999999999997389899998--88--------78-99999799999998
No 353
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=41.78 E-value=8.6 Score=17.87 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=18.7
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 76200224565430--6520001233333
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
.-++..++||.|.| ||||...++.-++
T Consensus 27 ~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 97699899999999985899999981895
No 354
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=41.64 E-value=8.6 Score=17.86 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=18.2
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++...+||.|.| ||||.-.++..++.
T Consensus 25 i~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 86999999999998759999999986176
No 355
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=41.36 E-value=11 Score=17.28 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=14.1
Q ss_pred CCEEEEEEEE--CCCEEHHHHH
Q ss_conf 0224565430--6520001233
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ 134 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~ 134 (497)
.+++.|||.| ||||.-..+.
T Consensus 21 g~~~iItGpN~sGKSt~Lr~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8689998998775799999999
No 356
>TIGR01012 Sa_S2_E_A ribosomal protein S2; InterPro: IPR005707 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the ribosomal protein of the eukaryotic cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=41.29 E-value=23 Score=15.05 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=12.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCC-CCCEEEE
Q ss_conf 9709997998999999999982762-0022456
Q gi|254781102|r 89 NTPILVVDNTRKFLSLFASRLYGKH-PENILAV 120 (497)
Q Consensus 89 ~~p~i~V~d~~~aL~~la~~~~~~~-~~~vIgI 120 (497)
++-++=+.-+.+-|+--|+.+-..- |.+|+.|
T Consensus 36 G~Y~ld~~K~dErL~~AAk~l~~~ENP~~I~vv 68 (197)
T TIGR01012 36 GLYVLDLRKTDERLRVAAKFLSRFENPEDILVV 68 (197)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 707870113408999999998742482111344
No 357
>TIGR00300 TIGR00300 conserved hypothetical protein TIGR00300; InterPro: IPR005239 This family of conserved hypothetical proteins has no known function..
Probab=41.06 E-value=24 Score=15.03 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 98999999999658988999944
Q gi|254781102|r 444 NRIEAIRTAIEMLNKQDVLVVAG 466 (497)
Q Consensus 444 dr~eAi~~A~~~a~~gDvili~G 466 (497)
|.-+|=+.-.++.+.-|+||++.
T Consensus 336 dv~~Aq~~m~e~~~g~dMvlMls 358 (418)
T TIGR00300 336 DVVKAQEKMRELLQGADMVLMLS 358 (418)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999744652456888
No 358
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.06 E-value=9.5 Score=17.61 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++||.|-| ||||...++.-++..
T Consensus 33 i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p 62 (273)
T PRK13632 33 INEGEYVAILGHNGSGKSTISKILTGLLKP 62 (273)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 849989999999998699999999738778
No 359
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.98 E-value=9.4 Score=17.64 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=15.4
Q ss_pred EEEECCCCCCCCCE--EEEECCCCCCHHHHHHHHHHC
Q ss_conf 24530231468988--998038876768889999985
Q gi|254781102|r 32 EVSSDSRHIQAGWI--FVAIVGNKEDGHLFIPQAIAQ 66 (497)
Q Consensus 32 ~i~~DSr~v~~g~l--Fval~G~~~dGh~fi~~A~~~ 66 (497)
|.|..-+.|..|.. ++=+......|-+-+.+-+++
T Consensus 74 g~C~~C~~i~~g~~~D~~EiDaAs~~~vdd~R~l~~~ 110 (704)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN 110 (704)
T ss_pred CCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 7777678785589987477424544588999999985
No 360
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=40.97 E-value=20 Score=15.53 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHHHHHHHCCCCCCEEEEEEE--ECCCEEHHHHHHHHHHCCCC
Q ss_conf 999999827620022456543--06520001233333210232
Q gi|254781102|r 103 SLFASRLYGKHPENILAVTGT--SGKSSVASFVQQICQRSGLS 143 (497)
Q Consensus 103 ~~la~~~~~~~~~~vIgITGT--nGKTTt~~~l~~iL~~~g~~ 143 (497)
..+..+.+..++.. +-++|. .||||.+..+++.+...+..
T Consensus 8 ~~l~~~~~~~~~~~-ill~GppGtGKT~la~~ia~~~~~~~~~ 49 (151)
T cd00009 8 EALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAP 49 (151)
T ss_pred HHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999981879980-8998999988659999999971213798
No 361
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=40.96 E-value=9.1 Score=17.71 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=28.5
Q ss_pred EEEEC--C-CCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
Q ss_conf 02300--0-3786899997412110023-44403540266546004689999998619899990
Q gi|254781102|r 357 RIYVD--Y-AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 (497)
Q Consensus 357 ~viiD--y-ahNP~s~~~aL~~l~~~~~-~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t 416 (497)
.++.| . +=.|.+....++.++++.. |+. +++ +.-| | ..+.++||++++-
T Consensus 153 lLlLDEPtsgLD~~~~~~~~~~i~~l~~~g~t-ii~-vtHd--------l-~~~~~~~drii~l 205 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMT-ILV-VTHD--------L-GLVLEYFDRVLLL 205 (213)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEE-EECC--------H-HHHHHHCCEEEEE
T ss_conf 99981886678999999999999999968999-999-9079--------8-9999979999999
No 362
>KOG3220 consensus
Probab=40.86 E-value=11 Score=17.10 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=18.2
Q ss_pred CEEEEEEEE--CCCEEHHHHHHHHHHCCCCC
Q ss_conf 224565430--65200012333332102322
Q gi|254781102|r 116 NILAVTGTS--GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 116 ~vIgITGTn--GKTTt~~~l~~iL~~~g~~~ 144 (497)
.++|+||+- ||+|+ .++|++.|.++
T Consensus 2 ~iVGLTGgiatGKStV----s~~f~~~G~~v 28 (225)
T KOG3220 2 LIVGLTGGIATGKSTV----SQVFKALGIPV 28 (225)
T ss_pred EEEEEECCCCCCHHHH----HHHHHHCCCCE
T ss_conf 6999405656673799----99999749957
No 363
>pfam07279 DUF1442 Protein of unknown function (DUF1442). This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=40.85 E-value=24 Score=15.01 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=3.8
Q ss_pred CEEEEEEEEC
Q ss_conf 2245654306
Q gi|254781102|r 116 NILAVTGTSG 125 (497)
Q Consensus 116 ~vIgITGTnG 125 (497)
++|..+=|+|
T Consensus 43 kLiVe~~s~~ 52 (218)
T pfam07279 43 RLIVETWSEG 52 (218)
T ss_pred EEEEEEECCC
T ss_conf 5999971378
No 364
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=40.73 E-value=9.2 Score=17.68 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..++|+-|-| ||||+-.++.-++..
T Consensus 22 ~v~~Gei~gllG~NGaGKSTLl~~i~Gl~~p 52 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8869819999999999999999999578378
No 365
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=40.73 E-value=17 Score=16.02 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=15.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 00224565430--6520001233333
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
+..++||=|+. ||||-=+.|++--
T Consensus 57 ~GeLlA~mGsSGAGKTTLmn~La~R~ 82 (671)
T TIGR00955 57 PGELLAIMGSSGAGKTTLMNALAFRS 82 (671)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 67068984787662689999985337
No 366
>KOG3347 consensus
Probab=40.73 E-value=11 Score=17.10 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.5
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 2456543--065200012333332
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
-|-|||| .||||+++-++..+.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347 9 NILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 879867999880259999999739
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=40.48 E-value=9.7 Score=17.52 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEEE--ECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 2456543--0652000123333321023222
Q gi|254781102|r 117 ILAVTGT--SGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGT--nGKTTt~~~l~~iL~~~g~~~~ 145 (497)
+|+|-|. .||||++.+++.-|.-....+|
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~~~~ldtG 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCEEECCC
T ss_conf 9888689978989999999999099077665
No 368
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=40.45 E-value=24 Score=14.97 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=11.0
Q ss_pred EEEECCCEE--HHHHHHHHHHC
Q ss_conf 543065200--01233333210
Q gi|254781102|r 121 TGTSGKSSV--ASFVQQICQRS 140 (497)
Q Consensus 121 TGTnGKTTt--~~~l~~iL~~~ 140 (497)
=||++=|+| ++++..+|++.
T Consensus 172 dGt~atT~tpG~w~~~~ml~a~ 193 (605)
T TIGR01792 172 DGTKATTCTPGPWYLHRMLQAA 193 (605)
T ss_pred CCCCCEEECCCHHHHHHHHHHH
T ss_conf 7875454277379999999975
No 369
>TIGR01717 AMP-nucleosdse AMP nucleosidase; InterPro: IPR011271 This entry represents the AMP nucleosidase from proteobacteria but also including sequences from Corynebacterium, a Gram-positive organism. The Escherichia coli protein is the most well studied ..
Probab=40.44 E-value=20 Score=15.50 Aligned_cols=122 Identities=17% Similarity=0.282 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHCCCCCCCEEEE-CCCCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 443345521000135578602300--0378689999741211002344403540-2665460046899999986198999
Q gi|254781102|r 338 KLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAI 414 (497)
Q Consensus 338 ~f~~~~gR~E~i~~~~~~~~viiD--yahNP~s~~~aL~~l~~~~~~r~i~V~G-~~Gdrd~~kr~~mg~~a~~~ad~vi 414 (497)
.|+.| |..+|...+.|.|++.= .-.|..-+.-.|-.||. ..|+.+| |+|=|.. .-+|-...-+| +
T Consensus 256 ~~QMP--aYhLi~~~G~GITlvNIGVGPSNAKtITDHLAVLRP----~~WlMiGHCaGLr~s---q~iGDyvLAhA---Y 323 (486)
T TIGR01717 256 RFQMP--AYHLITADGDGITLVNIGVGPSNAKTITDHLAVLRP----HAWLMIGHCAGLRES---QRIGDYVLAHA---Y 323 (486)
T ss_pred CCCCC--HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCC----CCEEEECCCCCHHHH---HHHHHHHHHHH---H
T ss_conf 48997--269985069932899607488621235410221188----742872223041232---34312555200---0
Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC-CCCCCCEEECCCEECCCCHHH
Q ss_conf 9088798989899999998347980997898999999999658988999944-688663584497886799899
Q gi|254781102|r 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTNGEKKMSVDCD 487 (497)
Q Consensus 415 ~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~G-kG~e~~~~~~~~~~~~~~d~~ 487 (497)
+=.| .|++ .-+|-.+-||-.. -||.|++.|- =.|+| +|.|--+....|+..=.|||-
T Consensus 324 ~R~D--------HvLd---~~lP~~~PIPAla-EvQ~AL~~a~----~ev~G~~g~elk~~lRTGTV~t~DdRN 381 (486)
T TIGR01717 324 LRED--------HVLD---TRLPPDIPIPALA-EVQKALEEAV----AEVTGEEGEELKRRLRTGTVLTTDDRN 381 (486)
T ss_pred CCCC--------CCCC---CCCCCCCCCCCHH-HHHHHHHHHH----HHCCCCCCHHHHHHHCCCCEEEECCCC
T ss_conf 0235--------6537---6576987987617-8999999867----540688754555231046565310776
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=40.43 E-value=14 Score=16.55 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=19.6
Q ss_pred CCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 0224565430--6520001233--33321023
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
.+++-|||.| ||||.-..++ .+|.+.|.
T Consensus 29 ~~~~iiTGpN~gGKSt~lkti~l~~ilaq~G~ 60 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGS 60 (213)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 25999989998765999999999999998588
No 371
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=40.32 E-value=10 Score=17.37 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-.+..++|+-|-| ||||+-.|+.-++..
T Consensus 30 v~~Gei~gllGpNGAGKSTli~~l~Gl~~p 59 (306)
T PRK13536 30 VASGECFGLLGPNGAGKSTIARMILGMTSP 59 (306)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 859969999999898099999999679578
No 372
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=40.27 E-value=9 Score=17.75 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-.+..++||.|.| ||||...++.-++..
T Consensus 34 i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P 63 (281)
T PRK13633 34 VKKGEFLVILGHNGSGKSTIAKHMNALLLP 63 (281)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 879989999999998499999999758878
No 373
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.23 E-value=9.3 Score=17.64 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-.+..++||.|.| ||||...++.-++..
T Consensus 24 ~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 54 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9848999999999998099999999706858
No 374
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=39.81 E-value=9.4 Score=17.62 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=15.6
Q ss_pred CEEEEEEE--ECCCEEHHHHHH
Q ss_conf 22456543--065200012333
Q gi|254781102|r 116 NILAVTGT--SGKSSVASFVQQ 135 (497)
Q Consensus 116 ~vIgITGT--nGKTTt~~~l~~ 135 (497)
.+||+||. .||||++.++..
T Consensus 2 ~~IGLTGGIgsGKStv~~~l~~ 23 (394)
T PRK03333 2 LRIGLTGGIGAGKSTVSATLAQ 23 (394)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 4998306755579999999998
No 375
>KOG1532 consensus
Probab=39.69 E-value=17 Score=15.95 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=17.1
Q ss_pred EEEEEEEECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 24565430652000123333321023222
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~~~g~~~~ 145 (497)
++|..|| ||||-..=|.+-|.+.+.+.+
T Consensus 24 VvGMAGS-GKTTF~QrL~~hl~~~~~ppY 51 (366)
T KOG1532 24 VVGMAGS-GKTTFMQRLNSHLHAKKTPPY 51 (366)
T ss_pred EEECCCC-CCHHHHHHHHHHHHHCCCCCE
T ss_conf 9944778-841399999999862369980
No 376
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate. Chorismate is last common precursor of all three aromatic amino acids. ; GO: 0003866 3-phosphoshikimate 1-carboxyvinyltransferase activity.
Probab=39.49 E-value=25 Score=14.87 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=41.1
Q ss_pred EEECCHHHHHHHHHHHC-----CCCCEEEEECCCC-CCCEEECCCEECCCCHHHHH
Q ss_conf 99789899999999965-----8988999944688-66358449788679989999
Q gi|254781102|r 440 IEKGNRIEAIRTAIEML-----NKQDVLVVAGKGH-ETVHIVTNGEKKMSVDCDII 489 (497)
Q Consensus 440 ~~~~dr~eAi~~A~~~a-----~~gDvili~GkG~-e~~~~~~~~~~~~~~d~~~~ 489 (497)
+...||-+||...++-. .-.|-+.|.|+.+ .+|..++++....|+|+.++
T Consensus 349 ~KEsDRi~A~~~~L~klG~~~~E~~Dgl~I~G~~D~~~~~~l~g~~~~t~~DHRiA 404 (444)
T TIGR01356 349 VKESDRIAAIAEELRKLGVEVEEFEDGLYIRGGKDITRKKELKGAVVDTYGDHRIA 404 (444)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 12332489999999856937885064789965888877765478654275874899
No 377
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=39.46 E-value=17 Score=15.97 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=13.2
Q ss_pred CEEEEEEEECCCEEHHHHHHHHHHCC
Q ss_conf 22456543065200012333332102
Q gi|254781102|r 116 NILAVTGTSGKSSVASFVQQICQRSG 141 (497)
Q Consensus 116 ~vIgITGTnGKTTt~~~l~~iL~~~g 141 (497)
-+++-|| .|||.+...+..-+...+
T Consensus 22 ~i~~pTG-sGKT~~~~~~i~~~~~~~ 46 (103)
T pfam04851 22 LIVMATG-SGKTLTAAKLIARLLKGK 46 (103)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHCC
T ss_conf 9995899-987999999999998469
No 378
>PRK13409 putative ATPase RIL; Provisional
Probab=39.44 E-value=3.3 Score=20.55 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC---CCCEEEEEEEE--CCCE
Q ss_conf 676888999998598899984732233343223479709997998999999999982762---00224565430--6520
Q gi|254781102|r 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTS--GKSS 128 (497)
Q Consensus 54 ~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~---~~~vIgITGTn--GKTT 128 (497)
.++.-.|.+.+=-|+-.+|--.+.+...+ .++|-=+-+++..-++.=+-.+|+-| +.+++|+.|.| ||||
T Consensus 40 ~~~~~~i~e~lc~gcgicvkkcpf~ai~i-----inlp~~l~~~~~h~yg~n~f~l~~lp~p~~G~v~GLiG~NGaGKST 114 (590)
T PRK13409 40 EDGKPVISEELCIGCGICVKKCPFDAISI-----VNLPEELEEDCVHRYGPNGFKLYGLPIPKEGKVTGILGPNGIGKST 114 (590)
T ss_pred CCCCCEEEHHHCCCCCCCCCCCCCCEEEE-----ECCHHHHCCCCEEECCCCCEEEECCCCCCCCCEEEEECCCCCCHHH
T ss_conf 88961550533566542114488300576-----1483675777605416774356078989998789988999998999
Q ss_pred EHHHHHHHHHH
Q ss_conf 00123333321
Q gi|254781102|r 129 VASFVQQICQR 139 (497)
Q Consensus 129 t~~~l~~iL~~ 139 (497)
+-.+|+-.|.-
T Consensus 115 ~lkILsG~l~P 125 (590)
T PRK13409 115 AVKILSGELIP 125 (590)
T ss_pred HHHHHHCCCCC
T ss_conf 99999587148
No 379
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.40 E-value=25 Score=14.86 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999983
Q gi|254781102|r 425 PEKIRAEIIH 434 (497)
Q Consensus 425 ~~~I~~~i~~ 434 (497)
|..+.+++++
T Consensus 335 pa~~~a~ll~ 344 (389)
T COG1748 335 PAAIGAELLA 344 (389)
T ss_pred CHHHHHHHHH
T ss_conf 1799999997
No 380
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.39 E-value=9.7 Score=17.53 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 9999999998276200224565430--652000123333321
Q gi|254781102|r 100 KFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 100 ~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+||..+. +.-.+..++||.|-| ||||...++.-++..
T Consensus 21 ~aL~~vs---l~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p 59 (286)
T PRK13646 21 QAIHDVN---TEFEQGKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred CEEECEE---EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0662417---79869989999999998199999999707888
No 381
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=39.12 E-value=25 Score=14.84 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=75.8
Q ss_pred HHHCCC-CC-------C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 431043-21-------2-11123215455432110112234554210000001223211125420001222102356532
Q gi|254781102|r 197 HRLDGI-KL-------I-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 (497)
Q Consensus 197 ~rl~~i-~~-------d-iaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~ 267 (497)
|||+.| +| | +|=|||- |--.....=.++|+-....+..++.++|+-..-.|...++.+-...+++.
T Consensus 43 G~Ld~v~~PpI~~F~~daLA~FlG~-----D~~R~t~GARe~KfaVMhalC~~GD~vV~D~~AHYtsyvAAEragl~v~e 117 (381)
T TIGR02539 43 GRLDEVTKPPIKDFLEDALAEFLGM-----DVVRVTHGAREGKFAVMHALCKEGDVVVLDGLAHYTSYVAAERAGLNVKE 117 (381)
T ss_pred CEECCCCCCCHHHHHHHHHHHHHCC-----CEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEE
T ss_conf 7703525883100045542667279-----74540677502457887640899898998587454458999754972788
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEE--ECCCCCCCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 222233332200000014544432112221001--0122343322-2110577888775202676763111234433455
Q gi|254781102|r 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEF-QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 (497)
Q Consensus 268 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~l~G~h-ni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~g 344 (497)
+.|....+.+.+....+..--..+. .-.|..- -+-+..=|.| |+..|--...+|+..|||+= -+---.=|
T Consensus 118 VPy~~g~P~Y~v~~e~Y~~viee~~-d~~G~~~~LallThvDG~YGNL~DA~kva~vc~~~gvPlL------LNCAY~vG 190 (381)
T TIGR02539 118 VPYETGHPEYKVDPEGYKEVIEEVE-DESGKPVALALLTHVDGEYGNLADAKKVAKVCREKGVPLL------LNCAYTVG 190 (381)
T ss_pred CCCCCCCCEEEECHHHHHHHHHHHH-CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEE------ECCCCEEE
T ss_conf 1655888607641667888886552-0279883489984026886751124568766542078622------12450521
Q ss_pred HHCCCCCCCCCCEEEECCCC
Q ss_conf 21000135578602300037
Q gi|254781102|r 345 RFEFVGTNSRGGRIYVDYAH 364 (497)
Q Consensus 345 R~E~i~~~~~~~~viiDyah 364 (497)
||-+ ....-+.-+|+=-.|
T Consensus 191 RmPv-~~ke~~~DFiVGSGH 209 (381)
T TIGR02539 191 RMPV-SAKEIKADFIVGSGH 209 (381)
T ss_pred EECC-CCCCCCCCEEEECCC
T ss_conf 0031-577778767780685
No 382
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=39.09 E-value=9.7 Score=17.53 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.5
Q ss_pred HCCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 276200224565430--652000123333321
Q gi|254781102|r 110 YGKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 110 ~~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+.-.+..++||.|-| ||||.-.++.-++..
T Consensus 20 l~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89889989999999998199999999659999
No 383
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=39.08 E-value=25 Score=14.83 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.8
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999834798099
Q gi|254781102|r 429 RAEIIHGIPGFIE 441 (497)
Q Consensus 429 ~~~i~~g~~~~~~ 441 (497)
+.|+..+.+...+
T Consensus 137 A~Ev~~~~pta~v 149 (159)
T pfam01210 137 AEEVALGLPTATV 149 (159)
T ss_pred HHHHHCCCCCEEE
T ss_conf 9999748981899
No 384
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.99 E-value=8.6 Score=17.88 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..++++.|-| ||||.-.+|.-++.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 86994999989999989999999958878
No 385
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.93 E-value=9.8 Score=17.51 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=26.7
Q ss_pred EEEEC--C-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 02300--0-3786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 357 RIYVD--Y-AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 357 ~viiD--y-ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.++.| . +=-|.+-+...+.++++..++.+++. ++|.. . .+.||+|++-.
T Consensus 117 illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~v--------tH~~~---~-~~~~D~v~~l~ 168 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVI--------AHRLS---T-IRDADRIIVLD 168 (171)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--------ECCHH---H-HHHCCEEEEEE
T ss_conf 89995776679989999999999998099989999--------57999---9-97099999981
No 386
>TIGR02069 cyanophycinase cyanophycinase; InterPro: IPR011811 This entry describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.; GO: 0016787 hydrolase activity, 0044260 cellular macromolecule metabolic process.
Probab=38.87 E-value=25 Score=14.81 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=11.5
Q ss_pred EEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 2300-0378689999741211002
Q gi|254781102|r 358 IYVD-YAHTSNSLEMILKNIRTIT 380 (497)
Q Consensus 358 viiD-yahNP~s~~~aL~~l~~~~ 380 (497)
++|| .=||=.=|-.+|.++.+.+
T Consensus 196 v~iDQHF~~RgRlGRLl~Ai~~~P 219 (297)
T TIGR02069 196 VLIDQHFAQRGRLGRLLSAIAQNP 219 (297)
T ss_pred CEEEECHHHCCHHHHHHHHHHHCC
T ss_conf 437306110224899999997378
No 387
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=38.85 E-value=26 Score=14.81 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=7.9
Q ss_pred CEEEECCCCCHHH
Q ss_conf 6023000378689
Q gi|254781102|r 356 GRIYVDYAHTSNS 368 (497)
Q Consensus 356 ~~viiDyahNP~s 368 (497)
..|..|.|.=|+.
T Consensus 122 l~Vv~DVNAvPP~ 134 (194)
T cd01078 122 LAVAADVNAVPPV 134 (194)
T ss_pred CEEEEECCCCCCC
T ss_conf 6599865899985
No 388
>PRK13112 consensus
Probab=38.70 E-value=26 Score=14.79 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=48.8
Q ss_pred HHHHHCCCCCCCCCCEEEEC-C------CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 45521000135578602300-0------3786899997412110023444035402665460046899999986198999
Q gi|254781102|r 342 VPGRFEFVGTNSRGGRIYVD-Y------AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 (497)
Q Consensus 342 ~~gR~E~i~~~~~~~~viiD-y------ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi 414 (497)
.+-|++.+.....|+.-++- + ..+++.+...++.+|+++.-.+.+=||.- .+...+.+..++|-+|
T Consensus 160 ~~eRi~~i~~~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs-------~~e~~~~~~~~aDGvI 232 (279)
T PRK13112 160 DDKRLPKVLANTSGFVYYVSMTGITGSALADTSAVGEAVARIKRHTDLPVCVGFGVK-------TPEQARAIAAHADGVV 232 (279)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC-------CHHHHHHHHCCCCEEE
T ss_conf 899999998527880899835666676645648899999999971789876783569-------9999999972599999
Q ss_pred ECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 90887989898999999983479
Q gi|254781102|r 415 VTDDNPRSEDPEKIRAEIIHGIP 437 (497)
Q Consensus 415 ~t~d~~r~e~~~~I~~~i~~g~~ 437 (497)
+-+ .|...|.+..+
T Consensus 233 VGS---------AiVk~Ie~~~~ 246 (279)
T PRK13112 233 VGT---------AIVNALAGSLD 246 (279)
T ss_pred ECH---------HHHHHHHHCCC
T ss_conf 877---------99999985467
No 389
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=38.60 E-value=10 Score=17.42 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=19.3
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..++||.|-| ||||...+++-++.
T Consensus 32 i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~ 60 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 88998999999999409999999966999
No 390
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.56 E-value=11 Score=17.11 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=18.4
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..+++|.|.| ||||.-.+++-++.
T Consensus 30 i~~Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 80984999998999988999999837878
No 391
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.52 E-value=9.7 Score=17.55 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9999999998276200224565430--65200012333332
Q gi|254781102|r 100 KFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 100 ~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+||..+. +.-++..++||.|.| ||||...++.-++.
T Consensus 25 ~AL~~vs---l~i~~Ge~~aIiG~nGsGKSTL~~~l~Gll~ 62 (289)
T PRK13645 25 KALNNTS---LTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred EEEECCE---EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5865328---8988998999999999579999999965988
No 392
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=38.48 E-value=26 Score=14.77 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 95 ~lLGRVvD~~G~P 107 (434)
T PRK07196 95 SWLGRVINGLGEP 107 (434)
T ss_pred HHCCCEECCCCCC
T ss_conf 2247577678862
No 393
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.34 E-value=10 Score=17.46 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.4
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-.+..++||.|.| ||||...++.-++..
T Consensus 29 ~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p 59 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8879989999999996599999999728888
No 394
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=38.33 E-value=12 Score=16.96 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=17.7
Q ss_pred EEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 24565430--6520001233333
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL 137 (497)
+|+|+|.. ||||++.-+++.|
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97883688887258999999995
No 395
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=38.15 E-value=26 Score=14.74 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 12333332102322
Q gi|254781102|r 131 SFVQQICQRSGLSS 144 (497)
Q Consensus 131 ~~l~~iL~~~g~~~ 144 (497)
.|+..++...|.+.
T Consensus 100 ~lLGRVvD~lG~Pi 113 (440)
T PRK08972 100 SLLGRVLDGNGNPL 113 (440)
T ss_pred CCCCCEECCCCCCC
T ss_conf 31188757886635
No 396
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=38.06 E-value=11 Score=17.28 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=12.5
Q ss_pred CCCEEEEEEEE--CCCEEHHHHHHHH
Q ss_conf 00224565430--6520001233333
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFVQQIC 137 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l~~iL 137 (497)
+..++|+.|-| ||||.-.++.-.+
T Consensus 25 ~ge~~~l~G~NGsGKTTl~~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999899984999999984898
No 397
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=37.95 E-value=13 Score=16.79 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.7
Q ss_pred CCEEEEEE--EECCCEEHHHHHHHHHH
Q ss_conf 02245654--30652000123333321
Q gi|254781102|r 115 ENILAVTG--TSGKSSVASFVQQICQR 139 (497)
Q Consensus 115 ~~vIgITG--TnGKTTt~~~l~~iL~~ 139 (497)
.|+++|+| |.||||-.+-++.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 513556457665717999999999688
No 398
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=37.53 E-value=13 Score=16.71 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=23.2
Q ss_pred EEEEE--EECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 45654--30652000123333321023222223
Q gi|254781102|r 118 LAVTG--TSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 118 IgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
|.+|| +.||||-+.-|..-|++.|..+..++
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i~~~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNIILG 34 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 789678999899999999999998299659965
No 399
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.27 E-value=10 Score=17.43 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-.+..++||.|-| ||||+..++.-++..
T Consensus 30 i~~Ge~~aiiG~sGsGKSTL~~~l~Gl~~~ 59 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 889989999999996899999999638998
No 400
>PRK00784 cobyric acid synthase; Provisional
Probab=37.25 E-value=15 Score=16.31 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=15.9
Q ss_pred EEEE-CCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 5430-6520001233333210232222
Q gi|254781102|r 121 TGTS-GKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 121 TGTn-GKTTt~~~l~~iL~~~g~~~~~ 146 (497)
|+|+ |||+.+.-+..+|.+.|++++-
T Consensus 11 T~S~vGKS~l~aaLCRi~~~~G~~VaP 37 (492)
T PRK00784 11 TTSDAGKSTLVAGLCRILARRGLRVAP 37 (492)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 788877999999999999958985578
No 401
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=37.05 E-value=27 Score=14.63 Aligned_cols=92 Identities=20% Similarity=0.315 Sum_probs=51.8
Q ss_pred EEEC--CCCCHHHHHHHHHHHHHCCCCC--CCEEEECCC-CCCCCHHHHHHH----HHHH-HCCE-EEECCCCCCCCCHH
Q ss_conf 2300--0378689999741211002344--403540266-546004689999----9986-1989-99908879898989
Q gi|254781102|r 358 IYVD--YAHTSNSLEMILKNIRTITSGR--IIVVFGCGG-DRDQGKRPIMGK----IALD-LADI-AIVTDDNPRSEDPE 426 (497)
Q Consensus 358 viiD--yahNP~s~~~aL~~l~~~~~~r--~i~V~G~~G-drd~~kr~~mg~----~a~~-~ad~-vi~t~d~~r~e~~~ 426 (497)
-|.| .+++++-+..+++-+-.-++=+ +|=||| | -| -..+++ .+.+ ..+. +|+--.-.+.|.-.
T Consensus 285 NFLDvGG~a~~e~v~~a~~ii~~d~~vk~IliNIfG--GI~r----cd~vA~giv~A~~~~~~~~PiVvRl~Gtn~e~g~ 358 (388)
T PRK00696 285 NFLDVGGGATKERVTEAFKIILSDPNVKAILVNIFG--GIMR----CDVIAEGIVAAVKEVGVKVPLVVRLEGTNVELGK 358 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC--CCCC----HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf 256348998899999999998669995099999368--8243----9999999999999649998789990678879999
Q ss_pred HHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC
Q ss_conf 99999983479809978989999999996589
Q gi|254781102|r 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458 (497)
Q Consensus 427 ~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~ 458 (497)
+|+++ +|++ .....|..||.++|+++++.
T Consensus 359 ~iL~~--sgl~-i~~~~~l~eAa~~aV~~~~g 387 (388)
T PRK00696 359 KILAE--SGLP-IIAADSLMDAAQKVVAAVAG 387 (388)
T ss_pred HHHHH--CCCC-EEEECCHHHHHHHHHHHHCC
T ss_conf 99997--8997-48707899999999997348
No 402
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.02 E-value=11 Score=17.17 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..++||-|.| ||||...++.-++.
T Consensus 29 I~~Ge~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87998999999999809999999965988
No 403
>pfam00186 DHFR_1 Dihydrofolate reductase.
Probab=36.71 E-value=28 Score=14.59 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=29.5
Q ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 334552100013557860230003786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 340 ~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+|+|+|..+|-+...... .+.+.--.+++.+|+.+.. .+.+.|+| |. .+=+.+.+++|.+++|-
T Consensus 52 ~pLp~R~niVlsr~~~~~--~~~~~v~~s~~~al~~~~~---~~~i~ViG--G~-------~iY~~~l~~~~~i~lT~ 115 (159)
T pfam00186 52 RPLPGRTNIVLTRNPDFK--AEGVEVVHSLEEALALAAG---EEEIFIIG--GA-------EIYKQALPYADRLYLTE 115 (159)
T ss_pred CCCCCCEEEEEECCCCCC--CCCCEEECCHHHHHHHHCC---CCCEEEEC--HH-------HHHHHHHHHCCEEEEEE
T ss_conf 459997499996356668--9985898999999997248---88399988--69-------99999998789999999
No 404
>pfam09949 DUF2183 Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=36.69 E-value=28 Score=14.59 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=23.2
Q ss_pred HCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 002344403540266546004689999998619899
Q gi|254781102|r 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 (497)
Q Consensus 378 ~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~v 413 (497)
+..+.++.+++|..|++|-. .-++++.++.+.|
T Consensus 60 ~~fP~~kfiLiGDsgq~Dpe---iY~~ia~~~P~rI 92 (100)
T pfam09949 60 RDFPDRKFILIGDSGQHDPE---IYAEIAREFPGRI 92 (100)
T ss_pred HHCCCCEEEEECCCCCCCHH---HHHHHHHHCCCCE
T ss_conf 97889708995688776999---9999999797558
No 405
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=36.46 E-value=17 Score=15.99 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=4.0
Q ss_pred CCCEEHHHHHHH
Q ss_conf 652000123333
Q gi|254781102|r 125 GKSSVASFVQQI 136 (497)
Q Consensus 125 GKTTt~~~l~~i 136 (497)
||||.-.+|.+|
T Consensus 36 GKSTl~sFI~sm 47 (984)
T COG4717 36 GKSTLFSFIHSM 47 (984)
T ss_pred CHHHHHHHHHHH
T ss_conf 177799999999
No 406
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=36.43 E-value=28 Score=14.57 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 3786899997412110023444035402665460046899999986198999
Q gi|254781102|r 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 (497)
Q Consensus 363 ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi 414 (497)
|-+|+.++.+++.++...+ + +.+-.+||=. . .-+.+.|....|.++
T Consensus 217 nmsp~~l~~av~~~~~~~~-~-~~lEaSGGI~-~---~ni~~yA~tGVD~i~ 262 (284)
T PRK06096 217 KFSPQQATEIAQIAPSLAP-H-CTLALTGGIN-L---TTLKNYLDCGIRLFI 262 (284)
T ss_pred CCCHHHHHHHHHHHHHHCC-C-EEEEEECCCC-H---HHHHHHHHCCCCEEE
T ss_conf 9899999999999872179-7-7999989999-9---999999980999998
No 407
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=36.42 E-value=12 Score=16.96 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 99999999998276200224565430--65200012333332
Q gi|254781102|r 99 RKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 99 ~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
..+|..+. +.-++..++||.|.| ||||...++.-++.
T Consensus 17 ~~vL~~is---l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 55 (221)
T cd03244 17 PPVLKNIS---FSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEE---EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 75175448---9986998999999999989999999967971
No 408
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=36.34 E-value=28 Score=14.56 Aligned_cols=13 Identities=8% Similarity=0.232 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 1233333210232
Q gi|254781102|r 131 SFVQQICQRSGLS 143 (497)
Q Consensus 131 ~~l~~iL~~~g~~ 143 (497)
.|+..++...|.+
T Consensus 96 ~lLGRViD~lG~P 108 (432)
T PRK06793 96 HLLGKVLSANGEV 108 (432)
T ss_pred CCCCCEECCCCCC
T ss_conf 6328775789661
No 409
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=36.20 E-value=20 Score=15.56 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=45.0
Q ss_pred CEEEECCCCC-HHHHHH----HHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC--CCCC-CCCHHH
Q ss_conf 6023000378-689999----7412110023444035402665460046899999986198999908--8798-989899
Q gi|254781102|r 356 GRIYVDYAHT-SNSLEM----ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPR-SEDPEK 427 (497)
Q Consensus 356 ~~viiDyahN-P~s~~~----aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~--d~~r-~e~~~~ 427 (497)
+.-+.||+.- ++.++. |=+.+.+. .|+...+|-++.. +..++. -++|.++==.+|..+ -||+ +++|
T Consensus 69 gY~h~~~~~l~~E~ikkd~~~a~~~i~~~-~g~~p~LlRpP~G-~fn~~~--~~~ae~~GY~~V~WsWHvdS~DWkNP-- 142 (198)
T TIGR02764 69 GYRHKNYTTLEDEKIKKDLLRAQEIIEKL-TGKKPTLLRPPNG-AFNKAV--LKLAESLGYTVVHWSWHVDSLDWKNP-- 142 (198)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCHHH--HHHHHHCCCCEEEEECCCCCCCCCCC--
T ss_conf 42124212587648999999988888651-0555016568898-604689--99999739918986245588354578--
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999834798099789899999999965898899994
Q gi|254781102|r 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 428 I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~ 465 (497)
| ...=|++.++.++|||+||+=
T Consensus 143 -------G---------~e~iv~~V~~~~~~GdIiL~H 164 (198)
T TIGR02764 143 -------G---------VESIVDRVVKNTKPGDIILLH 164 (198)
T ss_pred -------C---------EEHHHHHHHCCCCCCCEEEEE
T ss_conf -------6---------100011133127998569876
No 410
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=35.97 E-value=28 Score=14.52 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.1
Q ss_pred EEEEEEECCCE
Q ss_conf 45654306520
Q gi|254781102|r 118 LAVTGTSGKSS 128 (497)
Q Consensus 118 IgITGTnGKTT 128 (497)
||.+|..|-|.
T Consensus 4 IGA~G~VG~~~ 14 (263)
T cd00650 4 IGAGGNVGPAL 14 (263)
T ss_pred ECCCCHHHHHH
T ss_conf 87797799999
No 411
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=35.94 E-value=13 Score=16.62 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++...+||.|-| ||||...++.-++..
T Consensus 30 ~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9869999999999998799999999987288
No 412
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=35.79 E-value=13 Score=16.68 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=13.2
Q ss_pred CCCCCHH-HHHHHHHHCCCEEEEEC
Q ss_conf 8876768-88999998598899984
Q gi|254781102|r 51 GNKEDGH-LFIPQAIAQGAEAIVVS 74 (497)
Q Consensus 51 G~~~dGh-~fi~~A~~~GA~~~i~~ 74 (497)
.+=++-| .++=++|++|.+-=|.+
T Consensus 79 SSL~~~hn~~~ve~Ik~GvVT~I~S 103 (496)
T TIGR01584 79 SSLTSAHNEPLVEHIKKGVVTGIES 103 (496)
T ss_pred CCHHHHCCCCEEHEECCCEEECEEC
T ss_conf 3033312540001105865702011
No 413
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.56 E-value=29 Score=14.48 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6767631112344334552
Q gi|254781102|r 327 IDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 327 i~~~~i~~~L~~f~~~~gR 345 (497)
++.++|.+-+..|.....|
T Consensus 546 mt~~eI~~vv~~F~~AA~r 564 (770)
T PRK08255 546 MTRADMDRVRDQFVAATRR 564 (770)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999
No 414
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.55 E-value=11 Score=17.10 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=17.6
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..+++|.|.| ||||.-.+++-++.
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999579999999975999
No 415
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=35.41 E-value=29 Score=14.46 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=44.7
Q ss_pred CCCCCEEEECC---C-C--CCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 34440354026---6-5--4600468999999861989999088798989899999998347980997898999999999
Q gi|254781102|r 381 SGRIIVVFGCG---G-D--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 (497)
Q Consensus 381 ~~r~i~V~G~~---G-d--rd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~ 454 (497)
.||.+.|+|-. | | |+..-.+.|.++....++..+. ||... +......+......|..+|++.|
T Consensus 309 ~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aY--------DP~a~-~~~~~~~~~~~~~~~~~~~~~~a-- 377 (414)
T COG1004 309 KGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAY--------DPVAM-ENAFRNFPDVELESDAEEALKGA-- 377 (414)
T ss_pred CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEE--------CCHHH-HHHHHCCCCCEEECCHHHHHHHC--
T ss_conf 78679999874169984200031799999999779989997--------82543-77773078716748999998409--
Q ss_pred HCCCCCEEEEEC
Q ss_conf 658988999944
Q gi|254781102|r 455 MLNKQDVLVVAG 466 (497)
Q Consensus 455 ~a~~gDvili~G 466 (497)
|++++.-
T Consensus 378 -----Daivi~t 384 (414)
T COG1004 378 -----DAIVINT 384 (414)
T ss_pred -----CEEEEEC
T ss_conf -----8999955
No 416
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=35.33 E-value=12 Score=17.03 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 200224565430--652000123333321
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
+...++||.|-| ||||.-.+++-++..
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p 56 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999998699999999669999
No 417
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.32 E-value=12 Score=16.91 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 6200224565430--652000123333321
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
-++..++|+-|-| ||||+-.|+.-++..
T Consensus 23 v~~Gei~gllGpNGAGKSTll~~i~Gl~~p 52 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 889839999999987199999999769788
No 418
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=35.29 E-value=8.6 Score=17.86 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=15.8
Q ss_pred EEEEEECCCEEHHHHHHHHHH
Q ss_conf 565430652000123333321
Q gi|254781102|r 119 AVTGTSGKSSVASFVQQICQR 139 (497)
Q Consensus 119 gITGTnGKTTt~~~l~~iL~~ 139 (497)
||.| .||||+..++++-|..
T Consensus 2 GVsG-~GKStvg~~lA~~lg~ 21 (161)
T COG3265 2 GVSG-SGKSTVGSALAERLGA 21 (161)
T ss_pred CCCC-CCHHHHHHHHHHHCCC
T ss_conf 8776-5777999999998098
No 419
>KOG0924 consensus
Probab=35.22 E-value=29 Score=14.44 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCC-CCCCCC
Q ss_conf 98276200224565430652000123333321023-222223
Q gi|254781102|r 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIG 148 (497)
Q Consensus 108 ~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~-~~~~~g 148 (497)
..+.+.---++|=||| |||| .+ ++-|-+.|+ ..++||
T Consensus 367 ~ir~n~vvvivgETGS-GKTT--Ql-~QyL~edGY~~~GmIG 404 (1042)
T KOG0924 367 VIRENQVVVIVGETGS-GKTT--QL-AQYLYEDGYADNGMIG 404 (1042)
T ss_pred HHHHCCEEEEEECCCC-CCHH--HH-HHHHHHCCCCCCCEEE
T ss_conf 9863857999935889-8501--66-7999862245587154
No 420
>PRK10437 carbonic anhydrase; Provisional
Probab=35.20 E-value=21 Score=15.42 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=11.0
Q ss_pred EECCCC-------CCCCCEEEEE
Q ss_conf 530231-------4689889980
Q gi|254781102|r 34 SSDSRH-------IQAGWIFVAI 49 (497)
Q Consensus 34 ~~DSr~-------v~~g~lFval 49 (497)
|.|||- ..||++||-.
T Consensus 42 CsDSRV~p~~I~~~~PGelFV~R 64 (220)
T PRK10437 42 CSDSRVPAERLTGLEPGELFVHR 64 (220)
T ss_pred ECCCCCCHHHHCCCCCCCEEEEE
T ss_conf 33778899997389986678996
No 421
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=35.03 E-value=13 Score=16.75 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=26.8
Q ss_pred EEEECC---CCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
Q ss_conf 023000---37868999974121100234-4403540266546004689999998619899990
Q gi|254781102|r 357 RIYVDY---AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 (497)
Q Consensus 357 ~viiDy---ahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t 416 (497)
.++.|- +=-|.+....++.++++... .+.+|+ +.-| | ..+.++||++++-
T Consensus 118 ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii~-itHd--------l-~~~~~~~d~i~vm 171 (180)
T cd03214 118 ILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM-VLHD--------L-NLAARYADRVILL 171 (180)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECC--------H-HHHHHHCCEEEEE
T ss_conf 478858754479999999999999999846989999-9079--------8-9999979999999
No 422
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.95 E-value=13 Score=16.80 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=20.2
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 76200224565430--65200012333332
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-++...+||+|.+ ||||...++.-++.
T Consensus 25 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 54 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 987999999999999809999999966866
No 423
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.80 E-value=13 Score=16.70 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=19.7
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..++||.|.| ||||...++.-++.
T Consensus 32 i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~ 60 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 85998999999999979999999964979
No 424
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.77 E-value=11 Score=17.12 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 9999999998276200224565430--65200012333332
Q gi|254781102|r 100 KFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 100 ~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.||..+. +.-.+..++||.|.| ||||...++.-++.
T Consensus 21 ~aL~~vs---l~I~~Ge~~~iiG~nGsGKSTLl~~l~Gll~ 58 (286)
T PRK13641 21 KGLDNIS---FELEDGSFVALIGHTGSGKSTLMQHFNALLK 58 (286)
T ss_pred CEEEEEE---EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 1243106---7986999999999998399999999965989
No 425
>KOG1372 consensus
Probab=34.68 E-value=30 Score=14.39 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=14.7
Q ss_pred EEEEEEECCCEEHHHHHHHHHHCCCCCC
Q ss_conf 4565430652000123333321023222
Q gi|254781102|r 118 LAVTGTSGKSSVASFVQQICQRSGLSSF 145 (497)
Q Consensus 118 IgITGTnGKTTt~~~l~~iL~~~g~~~~ 145 (497)
-||||-.| ++++..|-..|+.+.
T Consensus 34 TGItGQDG-----SYLaEfLL~KgYeVH 56 (376)
T KOG1372 34 TGITGQDG-----SYLAEFLLSKGYEVH 56 (376)
T ss_pred ECCCCCCC-----HHHHHHHHCCCCEEE
T ss_conf 62368872-----699999870885676
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=34.65 E-value=21 Score=15.39 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCEEEEEEEE--CCCEEHHHHH--HHHHHCCC
Q ss_conf 0224565430--6520001233--33321023
Q gi|254781102|r 115 ENILAVTGTS--GKSSVASFVQ--QICQRSGL 142 (497)
Q Consensus 115 ~~vIgITGTn--GKTTt~~~l~--~iL~~~g~ 142 (497)
.++.-|||.| ||||.-..++ .+|.+.|.
T Consensus 31 ~~~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~ 62 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGS 62 (222)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 44899978998872899999999999997267
No 427
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=34.58 E-value=30 Score=14.38 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=54.8
Q ss_pred CC-CCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC--CCCCCCC-CH-
Q ss_conf 55-78602300-0378689999741211002344403540266546004689999998619899990--8879898-98-
Q gi|254781102|r 352 NS-RGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSE-DP- 425 (497)
Q Consensus 352 ~~-~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t--~d~~r~e-~~- 425 (497)
.+ +|.-||+| =..+ =+..=+++|. ..|| |+++|.+|.+-... -.++++..+ ++.+| +=.||.. +.
T Consensus 211 ~g~kGvDVILD~vGg~--Yl~~N~~alA--~dGR-lV~Ig~~gG~~A~e-~dL~~Ll~K---R~~~tGSTLR~R~~G~~K 281 (334)
T TIGR02824 211 GGGKGVDVILDIVGGS--YLARNIKALA--LDGR-LVQIGFQGGAKAEE-LDLGPLLAK---RLTITGSTLRARPVGAEK 281 (334)
T ss_pred CCCCCCCEEEECCCHH--HHHHHHHHHH--CCCC-EEEEECCCCCCCCC-CCHHHHHHH---HHHHEEEECCCCCHHHHH
T ss_conf 8998531798577668--8998999984--0793-99985067832011-684899988---754301025898835899
Q ss_pred HHHHHHHHHCC----------CCEEEECCHHHHHHHHHHHCCCCCE
Q ss_conf 99999998347----------9809978989999999996589889
Q gi|254781102|r 426 EKIRAEIIHGI----------PGFIEKGNRIEAIRTAIEMLNKQDV 461 (497)
Q Consensus 426 ~~I~~~i~~g~----------~~~~~~~dr~eAi~~A~~~a~~gDv 461 (497)
+.|++++.+.+ |-+....+..+| +.|+++.+.|+.
T Consensus 282 A~Ia~~l~~~VWPll~~G~~~P~I~~~fpL~~A-~~AH~~me~g~h 326 (334)
T TIGR02824 282 AAIAAELREQVWPLLASGRVRPVIDKVFPLEDA-AKAHALMESGDH 326 (334)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHH-HHHHHHHHCCCC
T ss_conf 999999888730466658525784210798999-999999745896
No 428
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=34.46 E-value=13 Score=16.69 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=29.8
Q ss_pred CEEEECC---CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 6023000---3786899997412110023444035402665460046899999986198999908
Q gi|254781102|r 356 GRIYVDY---AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 356 ~~viiDy---ahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
..++.|- +=.|.+.+...+.++++..++-|++. .-| | ..+.++||++++-.
T Consensus 153 ~lliLDEPt~gLD~~~~~~i~~~l~~~~~~~tii~~--tH~--------l-~e~~~l~dri~vl~ 206 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILT--THS--------M-DEAEALCDRIAIMS 206 (220)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE--CCC--------H-HHHHHHCCEEEEEE
T ss_conf 999995887688999999999999998489989999--687--------8-99999699999998
No 429
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=34.45 E-value=30 Score=14.36 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=16.2
Q ss_pred EECCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 978989999999996589889999
Q gi|254781102|r 441 EKGNRIEAIRTAIEMLNKQDVLVV 464 (497)
Q Consensus 441 ~~~dr~eAi~~A~~~a~~gDvili 464 (497)
...+.+++++.|++.-+.+.-|||
T Consensus 543 ~~~E~~~kL~Ea~~~~r~n~Pv~~ 566 (593)
T TIGR00118 543 KPEELDEKLKEALESKRNNEPVLL 566 (593)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 887799999999861468884699
No 430
>KOG2792 consensus
Probab=34.21 E-value=14 Score=16.53 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHHCCC
Q ss_conf 89898999999983479
Q gi|254781102|r 421 RSEDPEKIRAEIIHGIP 437 (497)
Q Consensus 421 r~e~~~~I~~~i~~g~~ 437 (497)
|+-++++|++.|...+.
T Consensus 260 rN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792 260 RNYDADELADSILKHVA 276 (280)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 66888899999999988
No 431
>pfam08353 DUF1727 Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=34.21 E-value=30 Score=14.34 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCCEEEECC--CCCCCCH--HHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHH-HHHCCC
Q ss_conf 7868999974121100234-440354026--6546004--689999998619899990887989898999999-983479
Q gi|254781102|r 364 HTSNSLEMILKNIRTITSG-RIIVVFGCG--GDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437 (497)
Q Consensus 364 hNP~s~~~aL~~l~~~~~~-r~i~V~G~~--Gdrd~~k--r~~mg~~a~~~ad~vi~t~d~~r~e~~~~I~~~-i~~g~~ 437 (497)
-||.++..+|+.+..-+.. .+++++... ..||.+= -..+-++.. ....++++.. |.+| .+-- -.+|++
T Consensus 3 KNP~G~~~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~-~~~~vivsG~--Ra~D---mAlRLkyAGv~ 76 (110)
T pfam08353 3 KNPAGLNEVLDMLATDPGPKSLVILLNDNYADGRDVSWIWDVDFEKLNQ-NIRNIVVSGE--RAYD---MALRLKYAGVP 76 (110)
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHCC-CCCEEEEECC--CHHH---HHHHEEECCCC
T ss_conf 6837699999998538998549999658577886563640456778354-7767999735--2999---78672336837
Q ss_pred --CEEEECCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf --8099789899999999965898899994
Q gi|254781102|r 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 (497)
Q Consensus 438 --~~~~~~dr~eAi~~A~~~a~~gDvili~ 465 (497)
++.+.+|..+|++.+.+ .|++.+.|+
T Consensus 77 ~~~i~v~~d~~~ai~~~~~--~~~~~~yil 104 (110)
T pfam08353 77 EEKIIVEPDLEQAIEAIEE--SPTKTVYIL 104 (110)
T ss_pred HHHEEECCCHHHHHHHHHH--CCCCEEEEE
T ss_conf 7781762899999999986--899819999
No 432
>KOG2183 consensus
Probab=34.12 E-value=30 Score=14.33 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=68.5
Q ss_pred EEECCCCCCC--CCEEEEECCCCCCHHHHH-------HHHHHCCCEEEEECCCCCCCCCCCCC--CCCCCEEEECCHHHH
Q ss_conf 4530231468--988998038876768889-------99998598899984732233343223--479709997998999
Q gi|254781102|r 33 VSSDSRHIQA--GWIFVAIVGNKEDGHLFI-------PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKF 101 (497)
Q Consensus 33 i~~DSr~v~~--g~lFval~G~~~dGh~fi-------~~A~~~GA~~~i~~~~~~~~~~~~~~--~~~~p~i~V~d~~~a 101 (497)
.-+|++-.++ |-+||= .|+--|=--|+ +.|-+.+|..|-++..+..+..+-.. ..+...+--=.+.+|
T Consensus 69 ylin~~fw~~g~gPIffY-tGNEGdie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQA 147 (492)
T KOG2183 69 YLINDDFWKKGEGPIFFY-TGNEGDIEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQA 147 (492)
T ss_pred EEEECCCCCCCCCCEEEE-ECCCCCHHHHHHCCCHHHHHHHHHCCEEEEEEHHCCCCCCCCCCHHCCCHHHHCCCCHHHH
T ss_conf 887055214798766999-4785218888741215876437637527974400046677885300057465411108988
Q ss_pred HHHHH---HHHHCCC---CCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999---9982762---00224565430652000123333321023222223
Q gi|254781102|r 102 LSLFA---SRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 102 L~~la---~~~~~~~---~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
|...| ..+.+.. ...||++.||.|. ||+.=++. .++....|
T Consensus 148 LADfA~ll~~lK~~~~a~~~pvIafGGSYGG-----MLaAWfRl-KYPHiv~G 194 (492)
T KOG2183 148 LADFAELLTFLKRDLSAEASPVIAFGGSYGG-----MLAAWFRL-KYPHIVLG 194 (492)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCHHH-----HHHHHHHH-CCHHHHHH
T ss_conf 9999999999863223002958995472256-----99999971-17066641
No 433
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.03 E-value=12 Score=16.99 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=20.6
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..++||.|-| ||||...++.-++.
T Consensus 17 i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~ 45 (276)
T PRK13634 17 IPSGSYVAIIGHTGSGKSTLLQHLNGLLK 45 (276)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98998999999999699999999974999
No 434
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=33.97 E-value=13 Score=16.64 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=19.5
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..++||.|.| ||||...++.-++.
T Consensus 24 i~~Ge~~aliG~sGsGKSTLl~~l~gl~~ 52 (248)
T PRK11264 24 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ 52 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87998999999999809999999975899
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=33.95 E-value=14 Score=16.52 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCCEEEECCHHHHHHHH---HHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 97099979989999999---9998276200224565430--65200012333332
Q gi|254781102|r 89 NTPILVVDNTRKFLSLF---ASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 89 ~~p~i~V~d~~~aL~~l---a~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+.|.+.++|.......- -.-=+.-++..+++|.|-| ||||.-.++.-++.
T Consensus 4 ~~P~l~~~nvs~~~~~~~iL~~is~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 4 NSPLLQLQNVGYLAGDTKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEEEEEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9968999858998399899945179985996999999999999999999964668
No 436
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=33.90 E-value=13 Score=16.64 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=19.6
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-++..+++|.|-| ||||...++.-++.
T Consensus 24 i~~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87998999999999809999999963899
No 437
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=33.81 E-value=31 Score=14.30 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=14.5
Q ss_pred CHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1057788877-----52026767631112344334552
Q gi|254781102|r 313 YNALVAAGLC-----IAIGIDSALVLEHLEKLHVVPGR 345 (497)
Q Consensus 313 ~NalaAia~a-----~~lGi~~~~i~~~L~~f~~~~gR 345 (497)
--+|.|+|+. +.+=.+.+..++=|++ .+.||
T Consensus 141 NP~lLAiA~GytFVARgfs~d~~hLKeiiK~--A~~H~ 176 (302)
T TIGR02177 141 NPLLLAIAAGYTFVARGFSGDVAHLKEIIKE--AINHK 176 (302)
T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHCCC
T ss_conf 3899999808527458888748999999999--73289
No 438
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=33.75 E-value=12 Score=16.83 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=24.7
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2245654--306520001233333210232222234
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
+-|+|-| --|||||+.=++..|.. |+++.++|-
T Consensus 3 ~~iAiyGKGGIGKSTt~~NlaaalA~-g~rVl~igc 37 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSS-DNSTLVIGC 37 (264)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEECC
T ss_conf 28999789854788899999999987-997799856
No 439
>PRK10908 cell division protein FtsE; Provisional
Probab=33.73 E-value=13 Score=16.80 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..+++|.|-| ||||.-.++.-++..
T Consensus 24 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 54 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9969989999999980799999999659999
No 440
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=33.61 E-value=14 Score=16.49 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=20.9
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..++||.|-| ||||.-.++.-++..
T Consensus 28 ~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~p 58 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8879979999888998899999998567888
No 441
>PRK06936 type III secretion system ATPase; Provisional
Probab=33.55 E-value=31 Score=14.27 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC--CCCCCE
Q ss_conf 87866789887320335565557430024530231--468988
Q gi|254781102|r 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH--IQAGWI 45 (497)
Q Consensus 5 ~ll~~~~~~~~~~~~~~~~~~~d~~i~~i~~DSr~--v~~g~l 45 (497)
+-+...+.+-+.........+.=+.|.|..+.+.- +.-|++
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~Grv~~v~G~~iea~~~~~~iG~~ 47 (439)
T PRK06936 5 DYIPHHLRHAIVGSRLIQIRGRVTQVTGTILKAVVPGVRIGEL 47 (439)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEEEECCCCCCCE
T ss_conf 7889999999826985778879999996589998479997886
No 442
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=33.52 E-value=24 Score=15.00 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=52.6
Q ss_pred CEEEEEE--EECCCEEHHHHHHHHHHC-CCCCCCC----CCCCCCC-CCCCCCC-----CCCC--------CHHHHHHHH
Q ss_conf 2245654--306520001233333210-2322222----3454433-2355445-----7675--------312211111
Q gi|254781102|r 116 NILAVTG--TSGKSSVASFVQQICQRS-GLSSFQI----GPTSTIS-SFAQDNR-----LTTP--------SPIYLAKAL 174 (497)
Q Consensus 116 ~vIgITG--TnGKTTt~~~l~~iL~~~-g~~~~~~----g~~~~~~-~~~~~~~-----~TtP--------~~~~l~~~l 174 (497)
++.-||| -.|||| ++.++|+.. |.+.+.+ |-++... ....... ++.. +-+....-|
T Consensus 2 pVtvitGFLGsGKTT---lL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L 78 (323)
T COG0523 2 PVTVITGFLGSGKTT---LLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERL 78 (323)
T ss_pred CEEEEEECCCCCHHH---HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHH
T ss_conf 779981167799899---99999854589807999855740221677641348975798369707870342158999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHH-H-HC------CCCCC---CCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 11011223333356676665554-3-10------43212---11123215455432-11011223455421000000122
Q gi|254781102|r 175 SYLSSQGVTHVSVEASSHGLDQH-R-LD------GIKLI---AGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKES 242 (497)
Q Consensus 175 ~~~~~~g~~~~vlEvSS~gl~~~-r-l~------~i~~d---iaviTNI~~dHLd~-~gs~e~y~~aK~~If~~~~~~~~ 242 (497)
.. .+.+.|++++|.| ||.-. - +. .+.+. -+++|=+-..|+-. ..+..+ +|...+.-..
T Consensus 79 ~~-~~~~~D~ivIEtT--GlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~-------~~~~Qia~AD 148 (323)
T COG0523 79 LR-RRDRPDRLVIETT--GLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE-------LAEDQLAFAD 148 (323)
T ss_pred HH-CCCCCCEEEEECC--CCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHH-------HHHHHHHHCC
T ss_conf 85-2568998999688--777869999986065122454041336999847886545677999-------9999998679
Q ss_pred CCCCCCCCC
Q ss_conf 321112542
Q gi|254781102|r 243 PAIIYADDA 251 (497)
Q Consensus 243 ~~ViN~Dd~ 251 (497)
..|+|.-|.
T Consensus 149 ~ivlNK~Dl 157 (323)
T COG0523 149 VIVLNKTDL 157 (323)
T ss_pred EEEEECCCC
T ss_conf 999836456
No 443
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=33.46 E-value=19 Score=15.60 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHHH-HCCEEEECC-------CCCCCCC-------HHHHHHHHH--HCCCCEEEE--CCHHHHHHHHHHH
Q ss_conf 899999986-198999908-------8798989-------899999998--347980997--8989999999996
Q gi|254781102|r 400 PIMGKIALD-LADIAIVTD-------DNPRSED-------PEKIRAEII--HGIPGFIEK--GNRIEAIRTAIEM 455 (497)
Q Consensus 400 ~~mg~~a~~-~ad~vi~t~-------d~~r~e~-------~~~I~~~i~--~g~~~~~~~--~dr~eAi~~A~~~ 455 (497)
|.+.+++.+ ..|.+++|. |.-|... ...++.+++ .+++ ++.+ +|..|-..+|+++
T Consensus 328 P~l~~~a~~~~yDL~Lll~~DvpwVdDGlRd~~~~~~R~~f~~~lk~lL~k~ni~-yv~I~~~~y~eR~~kAi~~ 401 (411)
T PRK08099 328 PFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKRFQNLLVEMLEENNIE-YVRVESPDYDARFLRCVEL 401 (411)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHH
T ss_conf 8999998635877899808998755678766678889999999999999981997-6997178889999999999
No 444
>pfam06675 DUF1177 Protein of unknown function (DUF1177). This family consists of several hypothetical archaeal and and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=33.45 E-value=28 Score=14.52 Aligned_cols=16 Identities=13% Similarity=-0.124 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 0432121112321545
Q gi|254781102|r 200 DGIKLIAGSFTNLGRD 215 (497)
Q Consensus 200 ~~i~~diaviTNI~~d 215 (497)
+.+.-|+.+-|||.++
T Consensus 77 d~L~GDVii~ThIcp~ 92 (276)
T pfam06675 77 DVLDGDVIITTHICPN 92 (276)
T ss_pred CCCCCCEEEEEECCCC
T ss_conf 8057767999635899
No 445
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.36 E-value=14 Score=16.52 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.3
Q ss_pred HCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 276200224565430--65200012333332
Q gi|254781102|r 110 YGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 110 ~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
+.-++...+||.|.+ ||||...++.-++.
T Consensus 22 l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~ 52 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9986999999999999989999999743854
No 446
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=33.33 E-value=31 Score=14.25 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=40.2
Q ss_pred CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHH
Q ss_conf 74300245302314689889980388767688899999859889998473223334322347970999799899999999
Q gi|254781102|r 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106 (497)
Q Consensus 27 d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la 106 (497)
|+.|-|+..|.|.-+.|.+.|-|.=.+ | .+++++-+|.. .+.+++
T Consensus 1 ev~iIGmV~d~r~TknG~~~~~lED~T-------------G---------------------~i~vl~~kd~~-~~~~~~ 45 (79)
T cd04490 1 EVSIIGMVNDVRSTKNGHRIVELEDTT-------------G---------------------RITVLLTKDKE-ELFEEA 45 (79)
T ss_pred CEEEEEEECCCEECCCCCEEEEEECCC-------------C---------------------EEEEEEECCCH-HHHHHH
T ss_conf 969999993327616887899998799-------------9---------------------89999968936-775667
Q ss_pred HHHHCCCCCCEEEEEEEECCCE
Q ss_conf 9982762002245654306520
Q gi|254781102|r 107 SRLYGKHPENILAVTGTSGKSS 128 (497)
Q Consensus 107 ~~~~~~~~~~vIgITGTnGKTT 128 (497)
... .+-.||||+||-.+..
T Consensus 46 ~~l---l~DeVIGV~G~~s~~g 64 (79)
T cd04490 46 EDI---LPDEVIGVSGTVSKDG 64 (79)
T ss_pred HCC---CCCCEEEEEEEECCCC
T ss_conf 525---6887899999987899
No 447
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.17 E-value=14 Score=16.52 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=18.4
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 76200224565430--65200012333332
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-++...++|+|.+ ||||-..++.-++.
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 987999999998999829999999966766
No 448
>PRK09271 flavodoxin; Provisional
Probab=33.17 E-value=31 Score=14.23 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCC
Q ss_conf 00378689999741211002-3444035402665460
Q gi|254781102|r 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQ 396 (497)
Q Consensus 361 DyahNP~s~~~aL~~l~~~~-~~r~i~V~G~~Gdrd~ 396 (497)
++.--|+.+.-.++.|.+.. .||+.+|||+| |...
T Consensus 63 gdG~lPdE~~DF~e~L~~~dl~gk~~avFGsG-Dt~y 98 (160)
T PRK09271 63 NAGRTPPEMKRFIAELVETIGKPPNVAVFGTG-ETQW 98 (160)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC
T ss_conf 89989667899999998604568769998777-7765
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=33.11 E-value=15 Score=16.38 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 99999999998276200224565430--65200012333332
Q gi|254781102|r 99 RKFLSLFASRLYGKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 99 ~~aL~~la~~~~~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
..+|..+. +.-++...|||.|.+ ||||...++.-++.
T Consensus 34 ~~vL~~in---l~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 72 (257)
T cd03288 34 KPVLKHVK---AYIKPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CCCEECEE---EEECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 57310538---9987999999999999819999999960566
No 450
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=33.09 E-value=31 Score=14.22 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 12333332102322
Q gi|254781102|r 131 SFVQQICQRSGLSS 144 (497)
Q Consensus 131 ~~l~~iL~~~g~~~ 144 (497)
.|+..++...|.+.
T Consensus 108 ~lLGRVvd~lG~Pl 121 (451)
T PRK05688 108 SMLGRVLDGAGRAL 121 (451)
T ss_pred CCCCCEECCCCCCC
T ss_conf 53588888776426
No 451
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability . This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). ; GO: 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process.
Probab=32.96 E-value=18 Score=15.78 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=25.7
Q ss_pred EEEEECCCEEHHHHHHHHHHCCCCCCCCC
Q ss_conf 65430652000123333321023222223
Q gi|254781102|r 120 VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 (497)
Q Consensus 120 ITGTnGKTTt~~~l~~iL~~~g~~~~~~g 148 (497)
..|.+|||.+.-+++..|+..|.+++.+.
T Consensus 41 ~~GG~Gktp~v~wl~~~l~~~g~~~~~~~ 69 (342)
T TIGR00682 41 SVGGTGKTPVVLWLAELLKDRGLRVGVLS 69 (342)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 42578751487878999985698189985
No 452
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.95 E-value=14 Score=16.53 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=18.7
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++|+.|-| ||||+-.++.-++.
T Consensus 24 ~~Gei~~iiGpnGaGKSTl~~~i~Gl~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999999739999999975999
No 453
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=32.92 E-value=14 Score=16.53 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.1
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+...|||+|.+ ||||...++.-++.
T Consensus 27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87999999999999859999999967254
No 454
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=32.90 E-value=14 Score=16.42 Aligned_cols=49 Identities=33% Similarity=0.390 Sum_probs=34.5
Q ss_pred EECCHHHHHHHHHH-------HHHCCCCCCEEEE-----------EEEECCCEEHH-----------HHHHHHHHCCC
Q ss_conf 97998999999999-------9827620022456-----------54306520001-----------23333321023
Q gi|254781102|r 94 VVDNTRKFLSLFAS-------RLYGKHPENILAV-----------TGTSGKSSVAS-----------FVQQICQRSGL 142 (497)
Q Consensus 94 ~V~d~~~aL~~la~-------~~~~~~~~~vIgI-----------TGTnGKTTt~~-----------~l~~iL~~~g~ 142 (497)
+.+|=.+.|..|++ -+|.++|..++|| .||.||=|+.. .+|.-+..+|=
T Consensus 39 V~PdD~~~L~Dl~kfP~T~K~dLRdNYPf~~lAvp~~~v~R~HASSGTtGKPtVVgYt~~D~~~ws~vvARSi~aAGG 116 (431)
T TIGR02155 39 VHPDDLQSLSDLAKFPFTQKSDLRDNYPFGLLAVPREKVVRIHASSGTTGKPTVVGYTQKDLDTWSEVVARSIRAAGG 116 (431)
T ss_pred CCCCHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf 784122023667627888766453568733302364371686504688999769722735467799999999875278
No 455
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=32.83 E-value=32 Score=14.19 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=3.4
Q ss_pred HHHHHHHHCC
Q ss_conf 2333332102
Q gi|254781102|r 132 FVQQICQRSG 141 (497)
Q Consensus 132 ~l~~iL~~~g 141 (497)
|+..++...|
T Consensus 78 lLGRV~d~~G 87 (413)
T TIGR03497 78 LLGRVLDGLG 87 (413)
T ss_pred CCCCEECCCC
T ss_conf 0568877676
No 456
>TIGR00041 DTMP_kinase thymidylate kinase; InterPro: IPR000062 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process, 0006235 dTTP biosynthetic process.
Probab=32.77 E-value=12 Score=16.82 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEECCCEEHHHHHHHHHH-CCCCCCC
Q ss_conf 565430652000123333321-0232222
Q gi|254781102|r 119 AVTGTSGKSSVASFVQQICQR-SGLSSFQ 146 (497)
Q Consensus 119 gITGTnGKTTt~~~l~~iL~~-~g~~~~~ 146 (497)
||=| .||||..+.++..|.. .|+.+..
T Consensus 9 GiDG-aGKTT~~~~l~~~l~~l~g~~~~~ 36 (211)
T TIGR00041 9 GIDG-AGKTTQLNLLKKLLKELEGYKVLF 36 (211)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 1158-758999999999977513834788
No 457
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=32.72 E-value=32 Score=14.18 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 887676888999998598899984
Q gi|254781102|r 51 GNKEDGHLFIPQAIAQGAEAIVVS 74 (497)
Q Consensus 51 G~~~dGh~fi~~A~~~GA~~~i~~ 74 (497)
|.-.=|.--+..+-..||..+|+|
T Consensus 30 GYG~~GkGvA~~~rg~Ga~V~V~E 53 (162)
T pfam00670 30 GYGDVGKGCAASLKGQGARVIVTE 53 (162)
T ss_pred CCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 787667779998622999899994
No 458
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=32.67 E-value=32 Score=14.18 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.3
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 888775202676763
Q gi|254781102|r 318 AAGLCIAIGIDSALV 332 (497)
Q Consensus 318 Aia~a~~lGi~~~~i 332 (497)
|+.+....|+-++-+
T Consensus 82 A~~~l~~~gi~pDii 96 (232)
T COG1634 82 AVSALLERGIRPDII 96 (232)
T ss_pred HHHHHHHCCCCCCEE
T ss_conf 999999859977579
No 459
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=32.67 E-value=30 Score=14.34 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899997412110
Q gi|254781102|r 367 NSLEMILKNIRT 378 (497)
Q Consensus 367 ~s~~~aL~~l~~ 378 (497)
++..++|..||.
T Consensus 206 ~~~~~~l~~lK~ 217 (272)
T TIGR02072 206 DDPLDVLRHLKK 217 (272)
T ss_pred CCHHHHHHHHHH
T ss_conf 788999999887
No 460
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=32.67 E-value=14 Score=16.54 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.4
Q ss_pred EEEE---EEECCCEEHHHHHHHH
Q ss_conf 4565---4306520001233333
Q gi|254781102|r 118 LAVT---GTSGKSSVASFVQQIC 137 (497)
Q Consensus 118 IgIT---GTnGKTTt~~~l~~iL 137 (497)
|+|+ |=.||||++--++..+
T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l 24 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL 24 (179)
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 89995899860999999999974
No 461
>KOG2749 consensus
Probab=32.64 E-value=32 Score=14.18 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCC--CCCCEEEEEEEE-CCCEEHHHHHHHHHHCCCCC
Q ss_conf 970999799899999999998276--200224565430-65200012333332102322
Q gi|254781102|r 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS-GKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 89 ~~p~i~V~d~~~aL~~la~~~~~~--~~~~vIgITGTn-GKTTt~~~l~~iL~~~g~~~ 144 (497)
.-|...-=|.-.+|.+.-...... +..+++-|.+|+ ||||.+.||-+-.-..|++.
T Consensus 76 eTpM~~ylNlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749 76 ETPMVLYLNLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98730001399999998665542002597799989876566789999999998717865
No 462
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.64 E-value=32 Score=14.17 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=63.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHH-----------------CCCCC
Q ss_conf 520267676311123443345521000135578602300--03786899997412110-----------------02344
Q gi|254781102|r 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT-----------------ITSGR 383 (497)
Q Consensus 323 ~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiD--yahNP~s~~~aL~~l~~-----------------~~~~r 383 (497)
...|.-.+.+.+-|..+=| ..| .+-+| -.-+..+.+..|..+.. |+.=.
T Consensus 487 ~~~G~GterieeeL~~~FP-~~r-----------v~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vt 554 (730)
T COG1198 487 RAVGPGTERIEEELKRLFP-GAR-----------IIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVT 554 (730)
T ss_pred EEECCCHHHHHHHHHHHCC-CCC-----------EEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCE
T ss_conf 9964619999999998789-994-----------7998466666435689999997579988663416664278866631
Q ss_pred CCEEEECCC-----C-CCCCHH-HHHHHHHHH-----HCCEEEECCCCCC--------CCCHHHHHHHH-----HHCCCC
Q ss_conf 403540266-----5-460046-899999986-----1989999088798--------98989999999-----834798
Q gi|254781102|r 384 IIVVFGCGG-----D-RDQGKR-PIMGKIALD-----LADIAIVTDDNPR--------SEDPEKIRAEI-----IHGIPG 438 (497)
Q Consensus 384 ~i~V~G~~G-----d-rd~~kr-~~mg~~a~~-----~ad~vi~t~d~~r--------~e~~~~I~~~i-----~~g~~~ 438 (497)
++.|+.+.+ | |-..+. .++.+++++ ..-.|++-+-+|. ..|.+.-.++- ..+.|.
T Consensus 555 LVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PP 634 (730)
T COG1198 555 LVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPP 634 (730)
T ss_pred EEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999631431588843578999999999755326788986999967998579999986699999999999888618997
Q ss_pred EE-------EECCHHHHHHHHH------HHCCCCCEEEEEC---------CCCCCCEEEC
Q ss_conf 09-------9789899999999------9658988999944---------6886635844
Q gi|254781102|r 439 FI-------EKGNRIEAIRTAI------EMLNKQDVLVVAG---------KGHETVHIVT 476 (497)
Q Consensus 439 ~~-------~~~dr~eAi~~A~------~~a~~gDvili~G---------kG~e~~~~~~ 476 (497)
+. ...++.+|.+.+- +.+.+.| +-++| +|...||+.-
T Consensus 635 f~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~vLGP~~a~~~r~~g~yR~qiLl 693 (730)
T COG1198 635 FSRLAAVIASAKNEEKALEFARALRELLKEALPVD-VEVLGPAPAPLAKLAGRYRYQILL 693 (730)
T ss_pred HHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CEEECCCCCHHHHHCCCEEEEEEE
T ss_conf 06544667337898999999999999998627556-504688756267737855899998
No 463
>TIGR03011 sulf_tusB_dsrH sulfur relay protein TusB/DsrH. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=32.58 E-value=32 Score=14.17 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 89999741211002344403540
Q gi|254781102|r 367 NSLEMILKNIRTITSGRIIVVFG 389 (497)
Q Consensus 367 ~s~~~aL~~l~~~~~~r~i~V~G 389 (497)
++++.+|..+. ++..+++++
T Consensus 11 ~~l~~cL~~~~---~~D~iLLie 30 (94)
T TIGR03011 11 NDLELCLRLLG---PGDAILLLQ 30 (94)
T ss_pred CHHHHHHHHCC---CCCEEEEEH
T ss_conf 66999998547---999799862
No 464
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=32.50 E-value=26 Score=14.73 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=11.6
Q ss_pred EECCCC-------CCCCCEEEEEC
Q ss_conf 530231-------46898899803
Q gi|254781102|r 34 SSDSRH-------IQAGWIFVAIV 50 (497)
Q Consensus 34 ~~DSr~-------v~~g~lFval~ 50 (497)
|.|||- ..|||+|+...
T Consensus 33 CsDSRV~pe~if~~~~GdlFVvRn 56 (190)
T cd00884 33 CSDSRVVPALITQTQPGELFVVRN 56 (190)
T ss_pred EECCCCCHHHHHCCCCCCEEEEEE
T ss_conf 653589999982899976799841
No 465
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR; InterPro: IPR014075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents members of the SufR cyanobacterial protein family of transcriptional regulators that control the SUF system. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus..
Probab=32.33 E-value=32 Score=14.14 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 77888775202676763111234433
Q gi|254781102|r 316 LVAAGLCIAIGIDSALVLEHLEKLHV 341 (497)
Q Consensus 316 laAia~a~~lGi~~~~i~~~L~~f~~ 341 (497)
+.|+++|..|+|++..+++.|+.+..
T Consensus 16 ~sA~~lA~~L~iSpQAvRrHLKDLe~ 41 (215)
T TIGR02702 16 ASALALAEELAISPQAVRRHLKDLET 41 (215)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 88999999727886788765433210
No 466
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=32.32 E-value=32 Score=14.14 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=7.3
Q ss_pred HHHHHHHHCCEEEEC
Q ss_conf 999998619899990
Q gi|254781102|r 402 MGKIALDLADIAIVT 416 (497)
Q Consensus 402 mg~~a~~~ad~vi~t 416 (497)
+.+..+-.+|++++.
T Consensus 243 l~~~~dAGvt~v~l~ 257 (278)
T TIGR03620 243 VREHLDAGADHVAVQ 257 (278)
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 999997799868998
No 467
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=32.29 E-value=16 Score=16.15 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=26.9
Q ss_pred EEEEC--C-CCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCCCHHHHHHHHHHH-HCCEEEECC
Q ss_conf 02300--0-3786899997412110023-444035402665460046899999986-198999908
Q gi|254781102|r 357 RIYVD--Y-AHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTD 417 (497)
Q Consensus 357 ~viiD--y-ahNP~s~~~aL~~l~~~~~-~r~i~V~G~~Gdrd~~kr~~mg~~a~~-~ad~vi~t~ 417 (497)
.++.| . +=.|.+.+...+.++++.. |+-+++.- -+ + +.+.. .||++++-.
T Consensus 125 lllLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiiit--H~--------~-~~~~~~~~Drv~vl~ 179 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT--HY--------Q-RLLDYIKPDRVHVLY 179 (200)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE--EC--------H-HHHHHHCCCEEEEEE
T ss_conf 9999696226999999999999999985799999999--63--------6-877664699999987
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=32.29 E-value=15 Score=16.33 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHHH
Q ss_conf 76200224565430--652000123333321
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQR 139 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~~ 139 (497)
.-++..++|+-|-| ||||+-.++.-++..
T Consensus 27 ~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p 57 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9859829999999998499999999779778
No 469
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=32.27 E-value=16 Score=16.18 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=19.4
Q ss_pred CCCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 76200224565430--65200012333332
Q gi|254781102|r 111 GKHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 111 ~~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.-++...+||+|.+ ||||...++..++.
T Consensus 25 ~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 976999999999999989999999823861
No 470
>pfam09885 DUF2112 Uncharacterized protein conserved in archaea (DUF2112). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=32.00 E-value=33 Score=14.11 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 1223333356676665554310432
Q gi|254781102|r 179 SQGVTHVSVEASSHGLDQHRLDGIK 203 (497)
Q Consensus 179 ~~g~~~~vlEvSS~gl~~~rl~~i~ 203 (497)
..|-.|+.+|+-| |+ .||+.-+.
T Consensus 53 k~GlkYaavEvPS-Gv-RGRMsl~g 75 (143)
T pfam09885 53 KKGLKYAAVEVPS-GV-RGRMSLIG 75 (143)
T ss_pred HCCCCEEEEECCC-CC-CCCHHHHH
T ss_conf 1055126764486-65-21022446
No 471
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=31.88 E-value=31 Score=14.30 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=17.0
Q ss_pred EEEEEE--ECCCEEHHHHHHHHHHC
Q ss_conf 456543--06520001233333210
Q gi|254781102|r 118 LAVTGT--SGKSSVASFVQQICQRS 140 (497)
Q Consensus 118 IgITGT--nGKTTt~~~l~~iL~~~ 140 (497)
.-.||+ .|||||+++++..|.-.
T Consensus 48 ~l~~g~rg~gktt~ari~a~~lnc~ 72 (600)
T PRK09111 48 FMLTGVRGVGKTTTARILARALNYK 72 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 7645789878999999999996698
No 472
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=31.85 E-value=18 Score=15.74 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCEEEEEEE--ECCCEEHHHHHHHHH
Q ss_conf 022456543--065200012333332
Q gi|254781102|r 115 ENILAVTGT--SGKSSVASFVQQICQ 138 (497)
Q Consensus 115 ~~vIgITGT--nGKTTt~~~l~~iL~ 138 (497)
..+|+|.|+ .||||-+++|++=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 60899844644687899999998838
No 473
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=31.82 E-value=15 Score=16.29 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=20.5
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHHHC
Q ss_conf 200224565430--6520001233333210
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQRS 140 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~~~ 140 (497)
....++||.|-+ ||||+...+.-++...
T Consensus 31 ~~GEilgivGeSGsGKSTl~~~ilgll~~~ 60 (327)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYP 60 (327)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 899999999999878999999997488989
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=31.80 E-value=16 Score=16.15 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=24.5
Q ss_pred EEEECC--CC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 023000--37-86899997412110023444035402665460046899999986198999908
Q gi|254781102|r 357 RIYVDY--AH-TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 357 ~viiDy--ah-NP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.++.|- ++ -|++.+..++.+++.. ..+++. ++|+. ..++||+|++-+
T Consensus 112 iliLDEpTs~LD~~~~~~l~~~l~~~~--~Tvi~V--------tH~~~----~~~~aDrvl~Ld 161 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKELG--ITVISV--------GHRPS----LWKFHDRVLDLD 161 (166)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEE--------ECCHH----HHHCCCEEEEEE
T ss_conf 999758533289999999999999779--989999--------43469----997299999991
No 475
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=31.77 E-value=15 Score=16.29 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=27.5
Q ss_pred EEEEC--C-CCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 02300--0-37868999974121100234-44035402665460046899999986198999908
Q gi|254781102|r 357 RIYVD--Y-AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 357 ~viiD--y-ahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
.++.| . +=.|.+-...++.++++... .+.+|+ +.-| | ..+.++||++++-.
T Consensus 168 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~-vtHd--------l-~~~~~~aDrv~vl~ 222 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA-VLHD--------I-NMAARYCDYLVALR 222 (265)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECC--------H-HHHHHHCCEEEEEE
T ss_conf 899817765589999999999999998628989999-9388--------8-99999699999998
No 476
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=31.77 E-value=16 Score=16.17 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=19.7
Q ss_pred CCCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 6200224565430--65200012333332
Q gi|254781102|r 112 KHPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 112 ~~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
-.+..++||.|-| ||||.-.++.-++.
T Consensus 25 i~~Gei~~liGpNGaGKSTLlk~i~Gl~~ 53 (257)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELP 53 (257)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 86998999999999879999999856757
No 477
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=31.76 E-value=33 Score=14.08 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=11.6
Q ss_pred CCCEEEECCHH--HHHHHHHHHHHCC
Q ss_conf 97099979989--9999999998276
Q gi|254781102|r 89 NTPILVVDNTR--KFLSLFASRLYGK 112 (497)
Q Consensus 89 ~~p~i~V~d~~--~aL~~la~~~~~~ 112 (497)
+.-.+.|.|+. +||.++....++.
T Consensus 23 ~~~~~~v~~p~d~~Al~e~rn~~~G~ 48 (495)
T TIGR02533 23 DTLVVLVSDPLDLAALDEVRNRLFGA 48 (495)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 87999974788965799998643385
No 478
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=31.57 E-value=17 Score=16.00 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=22.6
Q ss_pred EEEEEEE-ECCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 2456543-06520001233333210232222
Q gi|254781102|r 117 ILAVTGT-SGKSSVASFVQQICQRSGLSSFQ 146 (497)
Q Consensus 117 vIgITGT-nGKTTt~~~l~~iL~~~g~~~~~ 146 (497)
+|+=|.| .||||++--|-..|...|.++..
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9954888885899999999999866872166
No 479
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=31.47 E-value=33 Score=14.05 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 763111234433
Q gi|254781102|r 330 ALVLEHLEKLHV 341 (497)
Q Consensus 330 ~~i~~~L~~f~~ 341 (497)
+.|++++..++-
T Consensus 105 ~TirkSi~kL~~ 116 (227)
T TIGR01011 105 KTIRKSIKKLKK 116 (227)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 480
>KOG3354 consensus
Probab=31.39 E-value=16 Score=16.13 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=15.3
Q ss_pred EEEEEEEECCCEEHHHHHHHHH
Q ss_conf 2456543065200012333332
Q gi|254781102|r 117 ILAVTGTSGKSSVASFVQQICQ 138 (497)
Q Consensus 117 vIgITGTnGKTTt~~~l~~iL~ 138 (497)
++|+.| .||+|..-++.+-|.
T Consensus 17 vmGvsG-sGKSTigk~L~~~l~ 37 (191)
T KOG3354 17 VMGVSG-SGKSTIGKALSEELG 37 (191)
T ss_pred EEECCC-CCHHHHHHHHHHHHC
T ss_conf 983588-774459999999858
No 481
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=31.29 E-value=34 Score=14.03 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=4.2
Q ss_pred HHHCCEEEEC
Q ss_conf 8619899990
Q gi|254781102|r 407 LDLADIAIVT 416 (497)
Q Consensus 407 ~~~ad~vi~t 416 (497)
.+.+|.++++
T Consensus 56 ~~~~DvIila 65 (93)
T pfam03807 56 AEEADVVILA 65 (93)
T ss_pred HHCCCEEEEE
T ss_conf 7449989999
No 482
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=31.25 E-value=18 Score=15.73 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEEEE--EECCCEEHHHHHHHHHHCCCCCCCCCC
Q ss_conf 245654--306520001233333210232222234
Q gi|254781102|r 117 ILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGP 149 (497)
Q Consensus 117 vIgITG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 149 (497)
.|+|-| --||+||+.=+++.|...|+++-.+|-
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGC 37 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGC 37 (278)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 79996278767312677899999972981799747
No 483
>KOG0365 consensus
Probab=31.23 E-value=29 Score=14.46 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 322211057788877520267676311123
Q gi|254781102|r 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 (497)
Q Consensus 308 G~hni~NalaAia~a~~lGi~~~~i~~~L~ 337 (497)
|+-.+.-+-+|++++..+|++.+++.++..
T Consensus 196 GE~DvRs~YcA~svasllni~~deL~eG~~ 225 (423)
T KOG0365 196 GEVDVRSAYCALSVASLLNIPMDELFEGTL 225 (423)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 751288999999999997899377777799
No 484
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=31.16 E-value=16 Score=16.07 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.4
Q ss_pred CCCEEEEEEEE--CCCEEHHHH
Q ss_conf 00224565430--652000123
Q gi|254781102|r 114 PENILAVTGTS--GKSSVASFV 133 (497)
Q Consensus 114 ~~~vIgITGTn--GKTTt~~~l 133 (497)
...+.+|.|-| ||||.-.++
T Consensus 21 ~~~itaivG~NGaGKSTLl~~i 42 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEAL 42 (204)
T ss_pred ECCEEEEECCCCCCHHHHHHHH
T ss_conf 0888999989999999999998
No 485
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=31.13 E-value=16 Score=16.05 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
.+..++|+.|-| ||||.-.++.-++.
T Consensus 28 ~~Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7997999998999889999999966888
No 486
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=31.11 E-value=34 Score=14.01 Aligned_cols=64 Identities=11% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEE--EEEEECCCEEHHHHHHH
Q ss_conf 8999998598899984732233343223479709997998999999999982762002245--65430652000123333
Q gi|254781102|r 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQI 136 (497)
Q Consensus 59 fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~~~vIg--ITGTnGKTTt~~~l~~i 136 (497)
|++.|++.|+..+=+ +|.++..|+..+ ..|......++| |-+--|=|.|...|+++
T Consensus 142 YA~~aL~AG~aFVN~----------------iP~fIAsdp~~~------~~F~e~glpi~GDDiksq~GATi~hr~La~L 199 (351)
T TIGR03450 142 YAQCAIDAGVAFVNA----------------LPVFIASDPEWA------KKFTDAGVPIVGDDIKSQVGATITHRVLAKL 199 (351)
T ss_pred HHHHHHHHCCCEECC----------------CCHHCCCCHHHH------HHHHHCCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 999889849817833----------------541015898999------9999879978725301135616479999999
Q ss_pred HHHCCCCC
Q ss_conf 32102322
Q gi|254781102|r 137 CQRSGLSS 144 (497)
Q Consensus 137 L~~~g~~~ 144 (497)
|+.-|.+.
T Consensus 200 ~~~Rgv~v 207 (351)
T TIGR03450 200 FEDRGVRL 207 (351)
T ss_pred HHHCCCEE
T ss_conf 99759756
No 487
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.89 E-value=34 Score=13.99 Aligned_cols=74 Identities=15% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCEEEEECCCCC---CCCCCCCCCCCCCEEEECCHH------------------HHHHHHHHHHHCCCCCC
Q ss_conf 889999985988999847322---333432234797099979989------------------99999999982762002
Q gi|254781102|r 58 LFIPQAIAQGAEAIVVSSAYS---LQDFSATIRSNTPILVVDNTR------------------KFLSLFASRLYGKHPEN 116 (497)
Q Consensus 58 ~fi~~A~~~GA~~~i~~~~~~---~~~~~~~~~~~~p~i~V~d~~------------------~aL~~la~~~~~~~~~~ 116 (497)
..+++++.+|+.++|+..... .+........++|++.++... ..+.++.....+..+.+
T Consensus 46 ~~i~~~i~~~vd~iii~~~d~~~~~~~~~~a~~aGIPVv~~d~~~~~~~~~~~~v~~dn~~~G~~~~~~l~~~~~~~~~~ 125 (282)
T cd06318 46 ADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSSINLEAGVVTQVQSSNAKNGNLVGEWVVGELGDKPMK 125 (282)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997699879981168056699999999779988997377787667237983588999999999999972789873
Q ss_pred EEEEEEEECCCEEHH
Q ss_conf 245654306520001
Q gi|254781102|r 117 ILAVTGTSGKSSVAS 131 (497)
Q Consensus 117 vIgITGTnGKTTt~~ 131 (497)
++-++|+.|-+++..
T Consensus 126 v~~l~g~~~~~~~~~ 140 (282)
T cd06318 126 IILLSGDAGNLVGQA 140 (282)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 898668889846999
No 488
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=30.85 E-value=16 Score=16.14 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++...+||.|.+ ||||...++.-++.
T Consensus 61 ~~Ge~vaIVG~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4999999999999819999999957872
No 489
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=30.83 E-value=19 Score=15.68 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=0.0
Q ss_pred EEEEEEEE--CCCEEHHHHHHHHHHCCCCCCCC
Q ss_conf 24565430--65200012333332102322222
Q gi|254781102|r 117 ILAVTGTS--GKSSVASFVQQICQRSGLSSFQI 147 (497)
Q Consensus 117 vIgITGTn--GKTTt~~~l~~iL~~~g~~~~~~ 147 (497)
||=+||=. ||||.+..+..-|...|.++..+
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~l 33 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989879999999999999999999869975997
No 490
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=30.80 E-value=16 Score=16.04 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHH
Q ss_conf 200224565430--6520001233
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQ 134 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~ 134 (497)
++..+++|.|-| ||||.-.++.
T Consensus 33 ~~Gei~~ilGpnGaGKSTLl~~l~ 56 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred ECCEEEEEECCCCCHHHHHHHHHH
T ss_conf 088199999899951999999985
No 491
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=30.73 E-value=34 Score=13.97 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCCEEEECCCC--CHHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 345521000135578602300037--8689999741211-0023444035402665460046899999986198999908
Q gi|254781102|r 341 VVPGRFEFVGTNSRGGRIYVDYAH--TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 (497)
Q Consensus 341 ~~~gR~E~i~~~~~~~~viiDyah--NP~s~~~aL~~l~-~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~ 417 (497)
+-+|||.+ .-.|+|-+|| =+-|++.|++.+| ..+.-.+|=| +.+-..+.-+++.-.||.|.|
T Consensus 148 G~nHR~~L------sDavmiKDNHi~~~Gs~~~Av~~aR~~~~~~~kiEV-------EVenlE~a~eA~~AGADiImL-- 212 (276)
T TIGR00078 148 GDNHRLGL------SDAVMIKDNHIAAAGSIEKAVKRARAALPFAKKIEV-------EVENLEEAEEAAEAGADIIML-- 212 (276)
T ss_pred CCCCCCCC------CCEEEEEECEEECCCCHHHHHHHHHHHCCCCCEEEE-------EECCHHHHHHHHHCCCCEEEC--
T ss_conf 85786888------773897502066068989999999984899807998-------628989999999709959980--
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 879898989999999834798099789
Q gi|254781102|r 418 DNPRSEDPEKIRAEIIHGIPGFIEKGN 444 (497)
Q Consensus 418 d~~r~e~~~~I~~~i~~g~~~~~~~~d 444 (497)
||=..|.-....+.+....+++....+
T Consensus 213 DNm~p~~~~~av~~~~~~~p~~~~EaS 239 (276)
T TIGR00078 213 DNMKPEEIKEAVELLKGRNPNVLVEAS 239 (276)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 698947999999999702990899983
No 492
>PRK07078 hypothetical protein; Validated
Probab=30.72 E-value=13 Score=16.71 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEEECCCEEHHHHHHHHHHCCCCC
Q ss_conf 543065200012333332102322
Q gi|254781102|r 121 TGTSGKSSVASFVQQICQRSGLSS 144 (497)
Q Consensus 121 TGTnGKTTt~~~l~~iL~~~g~~~ 144 (497)
+|.|||+|..+.|..+|-.....+
T Consensus 250 ~G~NGKStf~~vl~~lLGdYa~t~ 273 (510)
T PRK07078 250 TGANGKSVFVNTLATILGDYAANA 273 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 898847899999999865663048
No 493
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.71 E-value=34 Score=13.97 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEEEC--CCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 023146898899803--887676888999998598899984732233
Q gi|254781102|r 36 DSRHIQAGWIFVAIV--GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 (497)
Q Consensus 36 DSr~v~~g~lFval~--G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~ 80 (497)
|--.++|||++|++- |++.+--..++.|-++||..+........+
T Consensus 41 ~~~~i~~~Dv~i~iS~SG~T~e~~~~~~~ak~~g~~vI~iT~~~~S~ 87 (128)
T cd05014 41 DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 13477899999999799998679999999986378589998799996
No 494
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=30.69 E-value=34 Score=13.97 Aligned_cols=94 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHCC-EEEECCCCC-CCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCC
Q ss_conf 4035402665460046899999986198-999908879-89898999999983479---809978989999999996589
Q gi|254781102|r 384 IIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNP-RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458 (497)
Q Consensus 384 ~i~V~G~~Gdrd~~kr~~mg~~a~~~ad-~vi~t~d~~-r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~ 458 (497)
+|+++|+|+-+--..=.-.........+ .++|.+-|+ |-|-...+++.+.+... .+..-.||+||++-|
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gA------ 74 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDA------ 74 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC------
T ss_conf 98999985444399999999608568989999977999999999999999999619983999978999996689------
Q ss_pred CCEEEEECCCCCCCEEECCCEECCCCHHHHHHHH
Q ss_conf 8899994468866358449788679989999998
Q gi|254781102|r 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 (497)
Q Consensus 459 gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~ 492 (497)
|-|+. |+-.++...+..|.++-.++
T Consensus 75 -DfVi~--------~irvG~~~~r~~De~Iplk~ 99 (183)
T pfam02056 75 -DFVIN--------AIRVGLLPARELDEKIPLRH 99 (183)
T ss_pred -CEEEE--------EEEECCCHHHHHHHHHHHHC
T ss_conf -99999--------86407714888777679983
No 495
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=30.56 E-value=26 Score=14.70 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCCE--EEEEEEECCCEE
Q ss_conf 99979989999999999827620022--456543065200
Q gi|254781102|r 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 (497)
Q Consensus 92 ~i~V~d~~~aL~~la~~~~~~~~~~v--IgITGTnGKTTt 129 (497)
+..+.+..+..+.+-..+++-+...+ .|-||| |||=|
T Consensus 2 ~~~~~~Vf~~v~plv~~~l~G~n~ti~aYGqTGS-GKTyT 40 (186)
T cd01363 2 CVRVRPVFRDVGPLLQSALDGYNVCIFAYGQTGS-GKTYT 40 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCEE
T ss_conf 5308999998899999997887469999679999-87528
No 496
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein; InterPro: IPR008865 This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replication terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork .; GO: 0003677 DNA binding, 0006274 DNA replication termination, 0005737 cytoplasm.
Probab=30.48 E-value=14 Score=16.54 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCCCC--CCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC-----CCCHHHHH
Q ss_conf 234332--22110577888775-----202676763111234433455210001355786023000-----37868999
Q gi|254781102|r 304 FPLPGE--FQVYNALVAAGLCI-----AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY-----AHTSNSLE 370 (497)
Q Consensus 304 l~l~G~--hni~NalaAia~a~-----~lGi~~~~i~~~L~~f~~~~gR~E~i~~~~~~~~viiDy-----ahNP~s~~ 370 (497)
+.|||- |.+.|.--+-+... .|.-.+|.|...=+.+.. .-|||+|+.--+|--.+.=| =+||+|+|
T Consensus 83 vRLPGvLCF~V~~~~~~~~~~~I~~iN~LK~eLEhIvTVeSgl~~-eqRFEFVH~hL~GLITLnAYRtlT~L~nP~svR 160 (300)
T TIGR02648 83 VRLPGVLCFSVNDKQYAEAVSLIKEINKLKAELEHIVTVESGLPK-EQRFEFVHSHLHGLITLNAYRTLTPLLNPASVR 160 (300)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 420442435624799999999999986554420604675258671-003101202588521131256664321777331
No 497
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=30.48 E-value=16 Score=16.13 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEE--CCCEEHHHHHHHHH
Q ss_conf 200224565430--65200012333332
Q gi|254781102|r 113 HPENILAVTGTS--GKSSVASFVQQICQ 138 (497)
Q Consensus 113 ~~~~vIgITGTn--GKTTt~~~l~~iL~ 138 (497)
++..++||.|.+ ||||...++.-++.
T Consensus 26 ~~G~~vaivG~sGsGKSTll~ll~gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7999999999999859999999967765
No 498
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=30.27 E-value=35 Score=13.92 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCHHHH-HHHHHHHHHCCCCCCCEEEECCC-------------CCCCCHHHHHHHHHHHHCCEEEEC---CCCCCCCCHH
Q ss_conf 786899-99741211002344403540266-------------546004689999998619899990---8879898989
Q gi|254781102|r 364 HTSNSL-EMILKNIRTITSGRIIVVFGCGG-------------DRDQGKRPIMGKIALDLADIAIVT---DDNPRSEDPE 426 (497)
Q Consensus 364 hNP~s~-~~aL~~l~~~~~~r~i~V~G~~G-------------drd~~kr~~mg~~a~~~ad~vi~t---~d~~r~e~~~ 426 (497)
.+|+++ +++.--...|..|.||++.|=|| .|=+..||-+..+|-. .|.++|| +|....+=++
T Consensus 20 ~~~~Ai~~aa~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR~glPAIAL~-tD~S~Ltai~NDygyd~vF~ 98 (186)
T TIGR00441 20 ALIEAIQRAALLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLERPGLPAIALN-TDISILTAIANDYGYDEVFS 98 (186)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHH
T ss_conf 50889999999999999808908985685043358889998716400026776467776-22353232001102567877
Q ss_pred HHHHHHHHCCCCEEEECCH--HHHHHHHHHHCCCCC--EEEEECC---------CCCCCEEECCCEECCCC-HHHHHHHH
Q ss_conf 9999998347980997898--999999999658988--9999446---------88663584497886799-89999998
Q gi|254781102|r 427 KIRAEIIHGIPGFIEKGNR--IEAIRTAIEMLNKQD--VLVVAGK---------GHETVHIVTNGEKKMSV-DCDIIREI 492 (497)
Q Consensus 427 ~I~~~i~~g~~~~~~~~dr--~eAi~~A~~~a~~gD--vili~Gk---------G~e~~~~~~~~~~~~~~-d~~~~~~~ 492 (497)
+-.+++...-+=-.=+..+ .+=|-+|++-|+.-+ +|=++|| |..++.++ +|.. |-+-+.|+
T Consensus 99 RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l~-----VP~~~~t~RIQE~ 173 (186)
T TIGR00441 99 RQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVELR-----VPSKRDTARIQEI 173 (186)
T ss_pred HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEE-----CCCCCCCCCHHHH
T ss_conf 77663288986888742476708899999988457966999721786311335788860567-----6788758403234
No 499
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=30.13 E-value=16 Score=16.04 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=0.0
Q ss_pred ECCCEEHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0652000123333321023222223454
Q gi|254781102|r 124 SGKSSVASFVQQICQRSGLSSFQIGPTS 151 (497)
Q Consensus 124 nGKTTt~~~l~~iL~~~g~~~~~~g~~~ 151 (497)
.||||-+.+++.-|+..|.++...-.++
T Consensus 7 sGKsTq~~~L~~~L~~~g~~v~~~~ep~ 34 (186)
T pfam02223 7 AGKTTQAELLKERLKEQGIKVVLTREPG 34 (186)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8999999999999998799089974999
No 500
>KOG0410 consensus
Probab=30.01 E-value=35 Score=13.89 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-----HCCCCCCEEEEEE-EE-CCCE
Q ss_conf 9899999999998-----2762002245654-30-6520
Q gi|254781102|r 97 NTRKFLSLFASRL-----YGKHPENILAVTG-TS-GKSS 128 (497)
Q Consensus 97 d~~~aL~~la~~~-----~~~~~~~vIgITG-Tn-GKTT 128 (497)
+.++.|+.+-+.. +...+..+|+|.| || ||||
T Consensus 155 ~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsT 193 (410)
T KOG0410 155 QLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKST 193 (410)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHH
T ss_conf 999999999887766641335778628999634766889
Done!