HHsearch alignment for GI: 254781102 and conserved domain: pfam01225
>pfam01225 Mur_ligase Mur ligase family, catalytic domain. This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.
Probab=99.74 E-value=1.2e-17 Score=133.86 Aligned_cols=76 Identities=34% Similarity=0.468 Sum_probs=68.4
Q ss_pred CEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf 30024530231468988998038876768889999985988999847322333432234797099979989999999999
Q gi|254781102|r 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 (497)
Q Consensus 29 ~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~ 108 (497)
T Consensus 1 eI~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~GA~ai~~~~~~~------~~~~~~~~i~v~d~~~aL~~la~~ 74 (76)
T pfam01225 1 EIHFIGIDSRGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSAIPR------DPNPEVPGIPVIDRREALAELAAR 74 (76)
T ss_pred CCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC------CCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 90658878772799999998077867999999999980998999936545------679997399989999999999997
Q ss_pred HH
Q ss_conf 82
Q gi|254781102|r 109 LY 110 (497)
Q Consensus 109 ~~ 110 (497)
T Consensus 75 fy 76 (76)
T pfam01225 75 FY 76 (76)
T ss_pred HC
T ss_conf 69