HHsearch results for GI: 254781102 and protein with PDBid: 1e8c_A

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00  E-value=0  Score=745.62  Aligned_cols=469  Identities=35%  Similarity=0.509  Sum_probs=412.9

Q ss_pred             CCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHH
Q ss_conf             55574300245302314689889980388767688899999859889998473223334322347970999799899999
Q gi|254781102|r   24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS  103 (497)
Q Consensus        24 ~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~  103 (497)
                      ...+++|++|++|||+|+||||||||+|+++|||+|+++|+++||+++|++++.+..........++|+++|+|++++|+
T Consensus        15 ~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~vv~~~~~~~~~~~~~~~~~~~~i~V~d~~~aL~   94 (498)
T 1e8c_A           15 DAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLS   94 (498)
T ss_dssp             TCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEEETTEEEEEETTHHHHHH
T ss_pred             CCCCCEECCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCEEEECCHHHHHH
T ss_conf             99887379278506758999789990468888899999999879969998075334541010037985899899999999


Q ss_pred             HHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             999998276200--224565430652000123333321023222223454433-23554457675312211111110112
Q gi|254781102|r  104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQ  180 (497)
Q Consensus       104 ~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~-~~~~~~~~TtP~~~~l~~~l~~~~~~  180 (497)
                      +||++||++++.  ++||||||||||||++|++++|+..+.+++..|+.++.. ........++|++..++.+|..+.+.
T Consensus        95 ~la~~~~~~~~~~~~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (498)
T 1e8c_A           95 ALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQ  174 (498)
T ss_dssp             HHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             99999855733367189997899980006460004554375300025400134752245578787356789999998856


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             23333356676665554310432121112321545543211011223455421000000122321112542000122210
Q gi|254781102|r  181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA  260 (497)
Q Consensus       181 g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~  260 (497)
                      +++++++|+||+|+.+.++..++|+++|||||++||||+|||+++|+++|.++|..  ++.+.+|+|.||++...+.+..
T Consensus       175 ~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~gs~e~~~~aK~~i~~~--~~~g~~vln~Dd~~~~~~~~~~  252 (498)
T 1e8c_A          175 GATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKL  252 (498)
T ss_dssp             TCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT--SBCCEEEEETTSHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHC
T ss_conf             99299990698364556407688888999489778767568836767788886530--3677289935867887777650


Q ss_pred             CCCCCCCCCCCC----CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             235653222223----3332200000014544432112221001012234332221105778887752026767631112
Q gi|254781102|r  261 HNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL  336 (497)
Q Consensus       261 ~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L  336 (497)
                      ..........+.    .........+.....+..+.+..+++.+++.++++|.||++|+++|++++..+|++++++.+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~~~i~~~l  332 (498)
T 1e8c_A          253 PDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTA  332 (498)
T ss_dssp             TTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHG
T ss_pred             CCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             46258863145675433420000246522665201100467643688751273799999999999976221258999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC
Q ss_conf             34433455210001355786023000378689999741211002344403540266546004689999998619899990
Q gi|254781102|r  337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT  416 (497)
Q Consensus       337 ~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t  416 (497)
                      .+|++++||||.+... ++..+++||||||+||+++++++++++++|+++|+|+||+|+..+|++|++++.+++|.+|+|
T Consensus       333 ~~~~~~~gR~e~~~~~-~~~~iidDy~~np~s~~a~l~~l~~~~~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt  411 (498)
T 1e8c_A          333 ARLQPVCGRMEVFTAP-GKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVT  411 (498)
T ss_dssp             GGCCCCTTSSEEECCT-TSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEEC
T ss_pred             HHCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             7458989972899938-954999942799299999999988656998899988766665215589999998559999999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHH
Q ss_conf             887989898999999983479---80997898999999999658988999944688663584497886799899999984
Q gi|254781102|r  417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL  493 (497)
Q Consensus       417 ~d~~r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l  493 (497)
                      +|+||+|+|..|+.++.+++.   ++..+.|+.||++.|.++++|||+|||+|||||+||++. +.+.||+||++|||+|
T Consensus       412 ~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~d~~eAi~~a~~~a~~gDvVLi~G~G~e~~~~~~-~~~~~f~d~~~~~~~~  490 (498)
T 1e8c_A          412 DDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVG-NQRLDYSDRVTVARLL  490 (498)
T ss_dssp             CSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEET-TEEEECCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC-CEEECCCHHHHHHHHH
T ss_conf             878787798999999985676778879968999999999984899899999478887849989-9986898699999999


Q ss_pred             HHH
Q ss_conf             430
Q gi|254781102|r  494 GLI  496 (497)
Q Consensus       494 ~~~  496 (497)
                      +.+
T Consensus       491 ~~~  493 (498)
T 1e8c_A          491 GVI  493 (498)
T ss_dssp             TSC
T ss_pred             HHH
T ss_conf             888