HHsearch results for GI: 254781102 and protein with PDBid: 1j6u_A
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=0 Score=427.26 Aligned_cols=393 Identities=18% Similarity=0.169 Sum_probs=255.1
Q ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 30231468988998038876768889999985988999847322333432234797099979989999999999827620
Q gi|254781102|r 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 (497)
Q Consensus 35 ~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~la~~~~~~~~ 114 (497)
.++..+..-|++|-=+|-. ..|..+..|.++| +|++- -.+.+.+ ++....
T Consensus 64 ~~~~~~~~~d~vV~SpgI~-~~~p~l~~a~~~g----------------------i~v~~---~~e~~~~----~~~~~~ 113 (469)
T 1j6u_A 64 HSADNWYDPDLVIKTPAVR-DDNPEIVRARMER----------------------VPIEN---RLHYFRD----TLKREK 113 (469)
T ss_dssp CCTTSCCCCSEEEECTTCC-TTCHHHHHHHHTT----------------------CCEEE---HHHHHHH----HHHHHC
T ss_pred CCHHHCCCCCEEEECCCCC-CCCHHHHHHHHCC----------------------CCEEE---HHHHHHH----HHHHCC
T ss_conf 8978879998999889689-8889999999859----------------------96871---9999998----776466
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||++|++++|+..|..+..+++.+.. . +.. .......+++|+|+||+.
T Consensus 114 ~~~IaITGTnGKTTTt~ml~~iL~~~g~~~~~~~~~~~~--~-----------~~~-----~~~~~~~~~~V~E~~~~~- 174 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMD--S-----------LEH-----GNYEKGNGPVVYELDESE- 174 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCT--T-----------STT-----SSEECCSSCEEEEECTTS-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC--C-----------CCC-----HHCCCCCCEEEEECCCCC-
T ss_conf 767999689961469999999860545454120376556--4-----------210-----000369960799644321-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 554310432121112321545543211-0112234554210000001223211125420001222102356532222233
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
.+...++|+++|||||++||||+|+ +++.|...|..++. .....+.|.||+..+.+.+...........+
T Consensus 175 --~~~~~~~p~iavitNI~~DHld~~~~~~~~~~~~~~~i~~----~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~--- 245 (469)
T 1j6u_A 175 --EFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISR----NTDLVVTFAEDELTSHLGDVTFGVKKGTYTL--- 245 (469)
T ss_dssp --GGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHH----TCSEEEEETTCTTTGGGCSEEECSSSSSEEE---
T ss_pred --CCCCEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCEEEECCHHHHHHHHHCCCCCCCCCCCC---
T ss_conf --2110006888998067365324424226889999998751----6881154122055655543022222343111---
Q ss_pred CCCCCCCEECCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 332200000014544432112-2210010122343322211057788877520267676311123443345521000135
Q gi|254781102|r 274 GKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 (497)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~~ 352 (497)
...........+.+. .......+.++++|.||++|+++|+++|..+|++++.+.++|.+|++++||||.+...
T Consensus 246 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi~~~~i~~~l~~f~gv~~R~e~v~~~ 319 (469)
T 1j6u_A 246 ------EMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD 319 (469)
T ss_dssp ------EEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE
T ss_pred ------CCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf ------22112234540477505862025577201388898899999999982999999998875047878844799862
Q ss_pred C-CCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHH---
Q ss_conf 5-78602300037868999974121100234-440354026654600468999999861989999088798989899---
Q gi|254781102|r 353 S-RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--- 427 (497)
Q Consensus 353 ~-~~~~viiDyahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d~~r~e~~~~--- 427 (497)
+ .+++|++||||||++++++|++++++.++ ++++||+++++++..++..+...+.+++|.||+|+++||+|+|..
T Consensus 320 ~~~~i~vidDYAHnP~ai~a~l~~l~~~~~~~~ii~vf~~~~~~r~~~~~~~~~~a~~~aD~vilt~~~~~~E~~~~~~~ 399 (469)
T 1j6u_A 320 PETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGIS 399 (469)
T ss_dssp TTTTEEEEEECCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--------CHHHHHHTTSSEEEECCCBC---------C
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf 88883466404689899999999999765898289999798886467778999999970999999998899887545878
Q ss_pred ---HHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHHH
Q ss_conf ---9999983479809978989999999996589889999446886635844978867998999999844
Q gi|254781102|r 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 (497)
Q Consensus 428 ---I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l~ 494 (497)
|.+.+.....+...+++ .+++..+++ +++||+||++|||+...+.-. ....+...+...+++||
T Consensus 400 ~~~i~~~l~~~~~~~~~~~~-~~~i~~~l~-~~~gDiVL~~GaGdi~~~~~~-~~e~~~~~~~~~~~~~~ 466 (469)
T 1j6u_A 400 GKMIWDSLKSLGKEAYFVEK-LPELEKVIS-VSENTVFLFVGAGDIIYSSRR-FVERYQSSKSSPSRVLG 466 (469)
T ss_dssp HHHHHHHHHHTTCCEEECCS-GGGHHHHCC-CCSSEEEEEECSSTHHHHHHH-HHHHHHHHC--------
T ss_pred HHHHHHHHHHCCCCEEECCC-HHHHHHHHH-CCCCCEEEEECCCCHHHHHHH-HHHHHHHHHCCHHHHCC
T ss_conf 99999999846998598099-999999985-799799999569998999999-99999975187345306