HHsearch results for GI: 254781102 and protein with PDBid: 1p3d_A

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00  E-value=0  Score=400.62  Aligned_cols=329  Identities=19%  Similarity=0.255  Sum_probs=246.1

Q ss_pred             CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r  115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL  194 (497)
Q Consensus       115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl  194 (497)
                      .++||||||||||||+.|++++|+.+|.....++  |++......                .......+++|+|+||+.+
T Consensus       118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~--g~~~~~~~~----------------~~~~~~~~~~V~E~s~~~~  179 (475)
T 1p3d_A          118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGK----------------NAHLGASRYLIAEADESDA  179 (475)
T ss_dssp             SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE--EEEETTTTE----------------EEECCSSSEEEEECCCTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE--CCCCCCCCH----------------HCCCCCCCEEEEEECCCHH
T ss_conf             5257886567875179999999997799978998--981465410----------------0336898728999763445


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             554310432121112321545543211-0112234554210000001223211125420001222102356532222233
Q gi|254781102|r  195 DQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ  273 (497)
Q Consensus       195 ~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~  273 (497)
                      .   ...++|+++|||||++||||+|+ ++|+|+++|.+||+. .+.++.+|+|.||+....+.+.   ...++++||..
T Consensus       180 ~---~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~-~~~~~~~i~n~dd~~~~~~~~~---~~~~~~~fg~~  252 (475)
T 1p3d_A          180 S---FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHN-LPFYGLAVMCADDPVLMELVPK---VGRQVITYGFS  252 (475)
T ss_dssp             G---GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTT-SCTTCEEEEETTCHHHHHHHHH---HCSEEEEEESS
T ss_pred             H---HHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---HCCCEEEECCC
T ss_conf             5---863599889996787124201068899999999999956-9948889996886788766786---37857995257


Q ss_pred             C-CCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             3-3220000001454443211222-1001012234332221105778887752026767631112344334552100013
Q gi|254781102|r  274 G-KFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT  351 (497)
Q Consensus       274 ~-~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~  351 (497)
                      . .+..............+.+... .....+.++++|.||++|+++|++++..+|++++.+.++|.+|++++||+|.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiava~~lGi~~e~i~~aL~~f~g~~~R~e~~~e  332 (475)
T 1p3d_A          253 EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGE  332 (475)
T ss_dssp             TTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEE
T ss_pred             CCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             66552211100001465200012444201220046754669999999999998499999999767643787531106889


Q ss_pred             ---CCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCC-CHHHHHHHHHHHHCCEEEECCCCCCCCC--
Q ss_conf             ---5578602300037868999974121100234-44035402665460-0468999999861989999088798989--
Q gi|254781102|r  352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSED--  424 (497)
Q Consensus       352 ---~~~~~~viiDyahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~-~kr~~mg~~a~~~ad~vi~t~d~~r~e~--  424 (497)
                         ..++..+++||||||+++++++++++++.++ |+++++|..+..+. .....+++ +...+|.++++.+++++|.  
T Consensus       333 i~~~~~~~~iiDDya~~p~si~a~l~al~~~~~~~~ii~i~~~~~~~~~~~~~~e~~~-~l~~~d~vil~~i~~a~e~~~  411 (475)
T 1p3d_A          333 FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQ-VLSQVDALIMLDVYAAGEAPI  411 (475)
T ss_dssp             EEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTHHHHHH-HHTTSSEEEEECCBCTTCCCC
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH-HHHHCCEEEECCCCCCCCCCC
T ss_conf             9954897899976788979999999999865699769999547777327899999999-998499999877667766654


Q ss_pred             ----HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             ----8999999983-47980997898999999999658988999944688
Q gi|254781102|r  425 ----PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH  469 (497)
Q Consensus       425 ----~~~I~~~i~~-g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~  469 (497)
                          .+.|.+.+.. +-.+.....|+.||++.+.+++++||+||+.|.|.
T Consensus       412 ~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~GsG~  461 (475)
T 1p3d_A          412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS  461 (475)
T ss_dssp             TTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             58489999999986089897996999999999998589989999978998