HHsearch results for GI: 254781102 and protein with PDBid: 1p3d_A
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=0 Score=400.62 Aligned_cols=329 Identities=19% Similarity=0.255 Sum_probs=246.1
Q ss_pred CCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 02245654306520001233333210232222234544332355445767531221111111011223333356676665
Q gi|254781102|r 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 (497)
Q Consensus 115 ~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~gl 194 (497)
.++||||||||||||+.|++++|+.+|.....++ |++...... .......+++|+|+||+.+
T Consensus 118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~--g~~~~~~~~----------------~~~~~~~~~~V~E~s~~~~ 179 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGK----------------NAHLGASRYLIAEADESDA 179 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE--EEEETTTTE----------------EEECCSSSEEEEECCCTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE--CCCCCCCCH----------------HCCCCCCCEEEEEECCCHH
T ss_conf 5257886567875179999999997799978998--981465410----------------0336898728999763445
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 554310432121112321545543211-0112234554210000001223211125420001222102356532222233
Q gi|254781102|r 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQ-TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 (497)
Q Consensus 195 ~~~rl~~i~~diaviTNI~~dHLd~~g-s~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~~~g~~ 273 (497)
. ...++|+++|||||++||||+|+ ++|+|+++|.+||+. .+.++.+|+|.||+....+.+. ...++++||..
T Consensus 180 ~---~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~-~~~~~~~i~n~dd~~~~~~~~~---~~~~~~~fg~~ 252 (475)
T 1p3d_A 180 S---FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHN-LPFYGLAVMCADDPVLMELVPK---VGRQVITYGFS 252 (475)
T ss_dssp G---GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTT-SCTTCEEEEETTCHHHHHHHHH---HCSEEEEEESS
T ss_pred H---HHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCHHHHHHHHH---HCCCEEEECCC
T ss_conf 5---863599889996787124201068899999999999956-9948889996886788766786---37857995257
Q ss_pred C-CCCCCCEECCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3-3220000001454443211222-1001012234332221105778887752026767631112344334552100013
Q gi|254781102|r 274 G-KFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 (497)
Q Consensus 274 ~-~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~E~i~~ 351 (497)
. .+..............+.+... .....+.++++|.||++|+++|++++..+|++++.+.++|.+|++++||+|.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiava~~lGi~~e~i~~aL~~f~g~~~R~e~~~e 332 (475)
T 1p3d_A 253 EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGE 332 (475)
T ss_dssp TTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEE
T ss_pred CCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 66552211100001465200012444201220046754669999999999998499999999767643787531106889
Q ss_pred ---CCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCCCCCC-CHHHHHHHHHHHHCCEEEECCCCCCCCC--
Q ss_conf ---5578602300037868999974121100234-44035402665460-0468999999861989999088798989--
Q gi|254781102|r 352 ---NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSED-- 424 (497)
Q Consensus 352 ---~~~~~~viiDyahNP~s~~~aL~~l~~~~~~-r~i~V~G~~Gdrd~-~kr~~mg~~a~~~ad~vi~t~d~~r~e~-- 424 (497)
..++..+++||||||+++++++++++++.++ |+++++|..+..+. .....+++ +...+|.++++.+++++|.
T Consensus 333 i~~~~~~~~iiDDya~~p~si~a~l~al~~~~~~~~ii~i~~~~~~~~~~~~~~e~~~-~l~~~d~vil~~i~~a~e~~~ 411 (475)
T 1p3d_A 333 FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQ-VLSQVDALIMLDVYAAGEAPI 411 (475)
T ss_dssp EEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTHHHHHH-HHTTSSEEEEECCBCTTCCCC
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH-HHHHCCEEEECCCCCCCCCCC
T ss_conf 9954897899976788979999999999865699769999547777327899999999-998499999877667766654
Q ss_pred ----HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf ----8999999983-47980997898999999999658988999944688
Q gi|254781102|r 425 ----PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 (497)
Q Consensus 425 ----~~~I~~~i~~-g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~ 469 (497)
.+.|.+.+.. +-.+.....|+.||++.+.+++++||+||+.|.|.
T Consensus 412 ~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~GsG~ 461 (475)
T 1p3d_A 412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS 461 (475)
T ss_dssp TTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST
T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 58489999999986089897996999999999998589989999978998