HHsearch results for GI: 254781102 and protein with PDBid: 2wtz_A
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=698.11 Aligned_cols=462 Identities=34% Similarity=0.509 Sum_probs=392.1
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 55743002453023146898899803887676888999998598899984732233343223479709997998999999
Q gi|254781102|r 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 (497)
Q Consensus 25 ~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~ 104 (497)
..|++|+||++|||+|+||||||||+|+++|||+|+.+|+++||+++|++.....+ .....++|+|+|+|++++|++
T Consensus 57 ~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~~---~~~~~~~p~i~v~d~~~aL~~ 133 (535)
T 2wtz_A 57 TEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGG 133 (535)
T ss_dssp TTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHHH---HCSCCSSCEEECSSSHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC---CCCCCCCEEEEECCHHHHHHH
T ss_conf 99970668996077479998899903487898999999998699899986743100---146678609998989999999
Q ss_pred HHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99998276200--22456543065200012333332102322222345443-3235544576753122111111101122
Q gi|254781102|r 105 FASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181 (497)
Q Consensus 105 la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~-~~~~~~~~~TtP~~~~l~~~l~~~~~~g 181 (497)
||+++|++|+. ++||||||||||||++|++++|+..|++++.+++.++. .+......+|||+...++..+..+.+.+
T Consensus 134 la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~e~g 213 (535)
T 2wtz_A 134 LAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERG 213 (535)
T ss_dssp HHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99998648100781999969998899999999999853974012477312303751155678854156676666665069
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 333335667666555431043212111232154554321101122345542100000-0122321112542000122210
Q gi|254781102|r 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRA 260 (497)
Q Consensus 182 ~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~-~~~~~~ViN~Dd~~~~~l~~~~ 260 (497)
..++++|+|||++.+.|++.+.|+++++|||+++|||+|+++++|+.+|.+||.... ...+.+|+|.||++...+....
T Consensus 214 ~~~~~~e~~~~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~~~~~~~~~v~n~~d~~~~~~~~~~ 293 (535)
T 2wtz_A 214 VDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293 (535)
T ss_dssp CCEEEEECCHHHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 86589971211677524333564089996562788652375676544433211002444575389925508899997630
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECC-CCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 235653222223333220000001-454443211-222100101223433222110577888775202676763111234
Q gi|254781102|r 261 HNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 (497)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~i-~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~ 338 (497)
..... ..+.............. ...+..+.+ ...+..+++.++++|.||++|+++|++++..+|++++.+.++|.+
T Consensus 294 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~ 371 (535)
T 2wtz_A 294 ADAIT--VSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLRE 371 (535)
T ss_dssp SSCEE--EESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCCE--EECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 34411--2214663002333202223576112203554310244322567215777999999998749999999999986
Q ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCC
Q ss_conf 43345521000135578602300037868999974121100234440354026654600468999999861989999088
Q gi|254781102|r 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 (497)
Q Consensus 339 f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d 418 (497)
|++ |||+|.+... .+..+++||||||+++.+++.+++. ..+|+++|||++||||..+|++|++++.+++|.+|+|.|
T Consensus 372 ~~~-~gR~e~i~~~-~~~~i~~dya~np~~~~~~l~~~~~-~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~ 448 (535)
T 2wtz_A 372 IRV-PGRLEQIDRG-QGFLALVDYAHKPEALRSVLTTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDD 448 (535)
T ss_dssp CCC-TTSSEECCSS-CSSEEEEECCCSHHHHHHHHHTTCC-SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCS
T ss_pred CCC-CCCEEEEEEC-CCCEEEEECCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 998-6738999851-8968999679996999999999764-159967997877887577899999999962999999987
Q ss_pred CCCCCCHHHHHHHHHHCCC------CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHH
Q ss_conf 7989898999999983479------8099789899999999965898899994468866358449788679989999998
Q gi|254781102|r 419 NPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 (497)
Q Consensus 419 ~~r~e~~~~I~~~i~~g~~------~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~ 492 (497)
|||+|+|..|.++++++.. ++..++|+.+|++.|+++++|||+|||+|||||++|++. +++.||+||+++++.
T Consensus 449 ~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDvVLv~G~Ghe~~q~~~-~~~~~f~dr~~~~~a 527 (535)
T 2wtz_A 449 NPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGG-GRVRPFDDRVELAAA 527 (535)
T ss_dssp CCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC--CEECCCTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEC-CEEECCCHHHHHHHH
T ss_conf 7675798999999998789747998889959999999999983899999998378888762489-998348479999999
Q ss_pred HHH
Q ss_conf 443
Q gi|254781102|r 493 LGL 495 (497)
Q Consensus 493 l~~ 495 (497)
|.=
T Consensus 528 l~~ 530 (535)
T 2wtz_A 528 LEA 530 (535)
T ss_dssp HHS
T ss_pred HHH
T ss_conf 999