HHsearch results for GI: 254781102 and protein with PDBid: 2wtz_A

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=100.00  E-value=0  Score=698.11  Aligned_cols=462  Identities=34%  Similarity=0.509  Sum_probs=392.1

Q ss_pred             CCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf             55743002453023146898899803887676888999998598899984732233343223479709997998999999
Q gi|254781102|r   25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL  104 (497)
Q Consensus        25 ~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~~  104 (497)
                      ..|++|+||++|||+|+||||||||+|+++|||+|+.+|+++||+++|++.....+   .....++|+|+|+|++++|++
T Consensus        57 ~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~~---~~~~~~~p~i~v~d~~~aL~~  133 (535)
T 2wtz_A           57 TEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGG  133 (535)
T ss_dssp             TTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHHH---HCSCCSSCEEECSSSHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCC---CCCCCCCEEEEECCHHHHHHH
T ss_conf             99970668996077479998899903487898999999998699899986743100---146678609998989999999


Q ss_pred             HHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             99998276200--22456543065200012333332102322222345443-3235544576753122111111101122
Q gi|254781102|r  105 FASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG  181 (497)
Q Consensus       105 la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~-~~~~~~~~~TtP~~~~l~~~l~~~~~~g  181 (497)
                      ||+++|++|+.  ++||||||||||||++|++++|+..|++++.+++.++. .+......+|||+...++..+..+.+.+
T Consensus       134 la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~e~g  213 (535)
T 2wtz_A          134 LAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERG  213 (535)
T ss_dssp             HHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99998648100781999969998899999999999853974012477312303751155678854156676666665069


Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             333335667666555431043212111232154554321101122345542100000-0122321112542000122210
Q gi|254781102|r  182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPAIIYADDAYSKEVMKRA  260 (497)
Q Consensus       182 ~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~-~~~~~~ViN~Dd~~~~~l~~~~  260 (497)
                      ..++++|+|||++.+.|++.+.|+++++|||+++|||+|+++++|+.+|.+||.... ...+.+|+|.||++...+....
T Consensus       214 ~~~~~~e~~~~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~~~~~~~~~v~n~~d~~~~~~~~~~  293 (535)
T 2wtz_A          214 VDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA  293 (535)
T ss_dssp             CCEEEEECCHHHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEEECHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf             86589971211677524333564089996562788652375676544433211002444575389925508899997630


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECC-CCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             235653222223333220000001-454443211-222100101223433222110577888775202676763111234
Q gi|254781102|r  261 HNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK  338 (497)
Q Consensus       261 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~i-~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~  338 (497)
                      .....  ..+.............. ...+..+.+ ...+..+++.++++|.||++|+++|++++..+|++++.+.++|.+
T Consensus       294 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~  371 (535)
T 2wtz_A          294 ADAIT--VSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLRE  371 (535)
T ss_dssp             SSCEE--EESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred             CCCCE--EECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             34411--2214663002333202223576112203554310244322567215777999999998749999999999986


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCC
Q ss_conf             43345521000135578602300037868999974121100234440354026654600468999999861989999088
Q gi|254781102|r  339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD  418 (497)
Q Consensus       339 f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t~d  418 (497)
                      |++ |||+|.+... .+..+++||||||+++.+++.+++. ..+|+++|||++||||..+|++|++++.+++|.+|+|.|
T Consensus       372 ~~~-~gR~e~i~~~-~~~~i~~dya~np~~~~~~l~~~~~-~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~  448 (535)
T 2wtz_A          372 IRV-PGRLEQIDRG-QGFLALVDYAHKPEALRSVLTTLAH-PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDD  448 (535)
T ss_dssp             CCC-TTSSEECCSS-CSSEEEEECCCSHHHHHHHHHTTCC-SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCS
T ss_pred             CCC-CCCEEEEEEC-CCCEEEEECCCCHHHHHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             998-6738999851-8968999679996999999999764-159967997877887577899999999962999999987


Q ss_pred             CCCCCCHHHHHHHHHHCCC------CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHH
Q ss_conf             7989898999999983479------8099789899999999965898899994468866358449788679989999998
Q gi|254781102|r  419 NPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI  492 (497)
Q Consensus       419 ~~r~e~~~~I~~~i~~g~~------~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~  492 (497)
                      |||+|+|..|.++++++..      ++..++|+.+|++.|+++++|||+|||+|||||++|++. +++.||+||+++++.
T Consensus       449 ~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDvVLv~G~Ghe~~q~~~-~~~~~f~dr~~~~~a  527 (535)
T 2wtz_A          449 NPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGG-GRVRPFDDRVELAAA  527 (535)
T ss_dssp             CCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC--CEECCCTTHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEC-CEEECCCHHHHHHHH
T ss_conf             7675798999999998789747998889959999999999983899999998378888762489-998348479999999


Q ss_pred             HHH
Q ss_conf             443
Q gi|254781102|r  493 LGL  495 (497)
Q Consensus       493 l~~  495 (497)
                      |.=
T Consensus       528 l~~  530 (535)
T 2wtz_A          528 LEA  530 (535)
T ss_dssp             HHS
T ss_pred             HHH
T ss_conf             999