HHsearch results for GI: 254781102 and protein with PDBid: 3eag_A
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=3.4e-40 Score=278.83 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=157.5
Q ss_pred CCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 20022456543065200012333332102322222345443323554457675312211111110112233333566766
Q gi|254781102|r 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 (497)
Q Consensus 113 ~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~~~~~g~~~~vlEvSS~ 192 (497)
...++||||||||||||++|++++|+.+|.++..+.. +...+...+..+... .........+|+|+|+||+
T Consensus 106 ~~~~vIaVTGTnGKTTTt~mi~~iL~~~g~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~V~E~~~~ 176 (326)
T 3eag_A 106 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIG-GVPENFGVSARLPQT--------PRQDPNSQSPFFVIEADEY 176 (326)
T ss_dssp GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECS-SEETTSSCSEECCCC--------CSSCTTSCCCEEEEECCCS
T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCC--------CCCCCCCCCCEEEEECCCC
T ss_conf 5673799946899554999999999861998311145-532245760013555--------4444455673222221576
Q ss_pred HHH----HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 655----5431043212111232154554321101122345542100000012232111254200012221023565322
Q gi|254781102|r 193 GLD----QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 (497)
Q Consensus 193 gl~----~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~~~~~~~~~ 268 (497)
++. +.++...+|+++|||||++||||||+|+|+|+++|.++|.. .++.+.+|+|.||+....+.++.. ..+++
T Consensus 177 ~~~~~~~~~~~~~~~p~iaviTNI~~DHLd~~~s~e~y~~~k~~~~~~-~~~~g~~v~n~d~~~~~~~~~~~~--~~~~~ 253 (326)
T 3eag_A 177 DTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT-VPSEGLIVCNGRQQSLQDTLDKGC--WTPVE 253 (326)
T ss_dssp EEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT-SCTTSEEEEESSCHHHHHHHTTCC--CSCEE
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHC--CCCCC
T ss_conf 535677403443468978999644454224348999999999999974-365738999378789999986521--35520
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCEE-ECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 22233332200000014544432112221001-0122343322211057788877520267676311123443345
Q gi|254781102|r 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 (497)
Q Consensus 269 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L~~f~~~~ 343 (497)
+|+.+.. ..... ......|.+..+++.. +++++++|+||++|++||+++|..+|+++++|.++|++|+++.
T Consensus 254 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~a~~lGi~~~~i~~aL~~F~GV~ 325 (326)
T 3eag_A 254 KFGTEHG-WQAGE---ANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp EESSSSS-EEEEE---ECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred CCCCCHH-HHHHH---HCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 0254202-22333---147716999999918899997865299999999999999984999999999974698989