HHsearch results for GI: 254781102 and protein with PDBid: 3lk7_A
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=0 Score=440.39 Aligned_cols=411 Identities=16% Similarity=0.221 Sum_probs=295.1
Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEC----CHHHHHHHH-
Q ss_conf 024530231468988998038876768889999985988999847322333432234797099979----989999999-
Q gi|254781102|r 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD----NTRKFLSLF- 105 (497)
Q Consensus 31 ~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~----d~~~aL~~l- 105 (497)
+|.+...-..++|..|++..|..+|+|.|++.+.++|+.+++...+.+. ...+.+++++. +....+...
T Consensus 20 sG~s~a~~l~~~G~~v~~~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~------~~~~~~~vv~Sp~I~~~~p~l~~a~ 93 (451)
T 3lk7_A 20 SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL------LDEDFCYMIKNPGIPYNNPMVKKAL 93 (451)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGG------GGSCEEEEEECTTSCTTSHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHC------CCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 9999999999788979999798788997899999789989968897881------7799859998997499999999999
Q ss_pred ---------HHHHHCCCCCCEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---------99982762002245654306520001233333210232222234544332355445767531221111111
Q gi|254781102|r 106 ---------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 (497)
Q Consensus 106 ---------a~~~~~~~~~~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~~~~~~~~~TtP~~~~l~~~l~~ 176 (497)
+..++.....++||||||||||||++|++++|+..|.++...|+.+..... + .
T Consensus 94 ~~~i~~~~~~~l~~~~~~~~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~~~~~~~~-------------~-----~ 155 (451)
T 3lk7_A 94 EKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPASE-------------V-----V 155 (451)
T ss_dssp HTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCHHH-------------H-----T
T ss_pred HCCCCEEEHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCHH-------------H-----H
T ss_conf 779979609999998740868999777786218999999986433441230466767054-------------4-----2
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 01122333335667666555431043212111232154554321101122345542100000012232111254200012
Q gi|254781102|r 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 (497)
Q Consensus 177 ~~~~g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l 256 (497)
....+.+++|+|+||+.+ +++..++|+++|||||++||||||+|+|+|+++|.+||.. .+..+.+|+|.||++.+.+
T Consensus 156 ~~~~~~~~~v~E~s~~~~--~~~~~~~p~iaviTNI~~dHld~~~s~e~y~~aK~~l~~~-~~~~~~~v~n~dd~~~~~l 232 (451)
T 3lk7_A 156 QAANDKDTLVMELSSFQL--MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQ-MSSSDFLVLNFNQGISKEL 232 (451)
T ss_dssp TTCCTTCEEEEECCHHHH--TTCSSCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTT-CCTTSEEEEETTSHHHHHH
T ss_pred HCCCCCCEEEEEECCCCC--CCCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
T ss_conf 135898789999433210--4554459869985071777637206988987775534314-6665653334675899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 22102356532222233332200000014544432112221001012234332221105778887752026767631112
Q gi|254781102|r 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 (497)
Q Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L 336 (497)
... ...++++|+........ .. .. ..+...........+++++|.||++|+++|++++..+|++++++.++|
T Consensus 233 ~~~---~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~lGi~~~~i~~~L 304 (451)
T 3lk7_A 233 AKT---TKATIVPFSTTEKVDGA-YV--QD--KQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETL 304 (451)
T ss_dssp HTT---CSSEEEEEESSSCCSSE-EE--ET--TEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHH---CCCCEEEECCCCCCCCC-EE--EC--EEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 874---17738984476455632-43--03--089975713676522477644456608999999998699999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEE
Q ss_conf 3443345521000135578602300-037868999974121100234440354026654600468999999861989999
Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 (497)
Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~viiD-yahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~ 415 (497)
.+|+++|||||++.. .++.++|+| |++||.++.++|+++ ..+++++++| |.+|+.. ++.|++.+...++.+++
T Consensus 305 ~~f~~~~gR~e~i~~-~~g~~iidD~~~~~~~s~~~al~~~---~~~~ii~i~g-g~~~~~~-~~~l~~~~~~~~~~ii~ 378 (451)
T 3lk7_A 305 SNFGGVKHRLQSLGK-VHGISFYNDSKSTNILATQKALSGF---DNTKVILIAG-GLDRGNE-FDELIPDITGLKHMVVL 378 (451)
T ss_dssp HHCCCCTTSSEEEEE-ETTEEEEECTTCCSHHHHHHHHHTS---CGGGEEEEEC-CSCCSCC-CGGGHHHHTTCSEEEEC
T ss_pred HHCCCCHHHHEEEEC-CCCEEEEECCCCHHHHHHHHHHHHC---CCCCEEEECC-CCCCCCC-HHHHHHHHHCCCEEEEE
T ss_conf 856665013157741-3886999567741699999999747---7887289807-8556665-99999998669889997
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCC-----CCCCEEECCCEECCCCHHHHHH
Q ss_conf 08879898989999999834798099789899999999965898899994468-----8663584497886799899999
Q gi|254781102|r 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HETVHIVTNGEKKMSVDCDIIR 490 (497)
Q Consensus 416 t~d~~r~e~~~~I~~~i~~g~~~~~~~~dr~eAi~~A~~~a~~gDvili~GkG-----~e~~~~~~~~~~~~~~d~~~~~ 490 (497)
+. +...|.+.+.....++..+.||+|||+.|.+++++||+||+.|.| +++||+.++ . | .+.|+
T Consensus 379 g~------~~~~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~~~gDiVLls~a~aSfD~f~nye~RG~---~-F--~~~v~ 446 (451)
T 3lk7_A 379 GE------SASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGD---E-F--IDTFE 446 (451)
T ss_dssp ST------THHHHHHHHHHTTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHH---H-H--HHHHH
T ss_pred CC------CHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCHHHHHH---H-H--HHHHH
T ss_conf 99------98999999986699689749999999999985899799997795504212249999999---9-9--99999
Q ss_pred HHHH
Q ss_conf 9844
Q gi|254781102|r 491 EILG 494 (497)
Q Consensus 491 ~~l~ 494 (497)
++.+
T Consensus 447 ~l~~ 450 (451)
T 3lk7_A 447 SLRG 450 (451)
T ss_dssp HHHC
T ss_pred HHCC
T ss_conf 8528