BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] (497 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/497 (100%), Positives = 497/497 (100%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI Sbjct: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV Sbjct: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 Query: 481 KMSVDCDIIREILGLIL 497 KMSVDCDIIREILGLIL Sbjct: 481 KMSVDCDIIREILGLIL 497 >gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 500 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/496 (76%), Positives = 441/496 (88%), Gaps = 3/496 (0%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI Sbjct: 1 MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+AQGA IVVSS + QDFS ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV Sbjct: 61 PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S +DNRLTTPSP+Y+A+AL+YL+S Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240 Query: 240 KESPAIIYA--DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K SPA+I DD++S +VM+RAHNAGCRVLSVGY+G FI LK + I++KQQV+ISVEG Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 KDFDFLFPL G FQV NALV+AGLCIA GID +V+E+LEK++V+PGRFEF+G NS+GGR Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480 Query: 478 GEKKMSVDCDIIREIL 493 G+ KMSVDCD+IREIL Sbjct: 481 GKIKMSVDCDVIREIL 496 >gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium fredii NGR234] gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium fredii NGR234] Length = 486 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/471 (49%), Positives = 310/471 (65%), Gaps = 11/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++DL +FPEL QL E I +++DSR ++ G +FVA+ G K +G +I Sbjct: 1 MKIRDLAGTNFPELSAQLQ---GNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A++V+ + P+ + R+FL+ A+RL+G+ PE ++AV Sbjct: 58 ADALSRGAAAVIVAEGSGAD-------AGAPVFELSEPRRFLAQAAARLFGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SGL++ IG T + D LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ GI++ + LEKL GR E VG G Y Sbjct: 291 FEIHVPLAGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L+++R T+GR+I+VFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALENVLESVRPFTTGRVIIVFGCGGDRDKGKRPIMGQIAARLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE PE IR+EI+ G G E +R EAIRTA+ ML D L+VAGKGHE Sbjct: 411 PRSEIPETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKGHE 461 >gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CFN 42] gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CFN 42] Length = 506 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 236/471 (50%), Positives = 310/471 (65%), Gaps = 13/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR+++ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRNVEPGNAFVAVTGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S Q A I P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 ADAAGRGAAVAIAS-----QPVDAAI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + ++ A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 249 KGAPAVIFADDPWSPQAVQAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 308 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G++ + LEKL GR E VG G Y Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAY 368 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ E G+R AIR A+ ML D L+VAGKGHE Sbjct: 429 PRSEEPAAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 479 >gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] Length = 487 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/471 (48%), Positives = 307/471 (65%), Gaps = 12/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL Q+ + +I +S+DSR + G FVA+ G K DG FI Sbjct: 1 MNLRDIAGNTFPELNGQVG---GALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA ++ + ++ + P+L VD R+FL++ ASR YGK PE ++AV Sbjct: 58 ADAVSRGASVVIAGNGAAV--------TGAPLLTVDEPRRFLAVAASRFYGKQPETMVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G + IG T +S D LTTP P+ L + L+ L+ Sbjct: 110 TGTAGKTSVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALAD 169 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y AKMRLF +LLP Sbjct: 170 EGVTHAAMEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLP 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S++ + A + G + +VG +G F+ LK+V +KQ + + Sbjct: 230 KGSPAVIFADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDI 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL I+ G+ + + + LEKL GR E VG G Y Sbjct: 290 FEIHIPLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GRIIVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 350 VDYAHKPDALENVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 409 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ E +R EAIR A+ ML D L+VAGKGHE Sbjct: 410 PRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKGHE 460 >gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase [Rhizobium etli CIAT 652] gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Rhizobium etli CIAT 652] Length = 506 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/471 (50%), Positives = 311/471 (66%), Gaps = 13/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR++ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDLFPELEAQLE-GPAGLLD--ISGLSSDSRNVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S Q A+I P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 ADAAGRGAAVAIAS-----QPVDASI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S++ +K A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 249 KGAPAVIFADDPWSRQAVKAAVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEI 308 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ + + LEKL GR E VG G Y Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAY 368 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ E G+R AIR A+ ML D L+VAGKGHE Sbjct: 429 PRSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 479 >gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 490 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. 83/13] gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653] Length = 488 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] Length = 490 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 235/471 (49%), Positives = 314/471 (66%), Gaps = 14/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPE+ QL P + I+ +SSDSRH+ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPEIEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S A + ++ P+L V R+FLS+ ASR +G+ PE ++AV Sbjct: 78 ADAAGRGAAVAIASQA---------VETSIPVLAVKEPRRFLSIAASRFFGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAG 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHAAMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQ-LLP 247 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + +K A +AG V +VG +G ++ LK+V +KQ I ++G+ Sbjct: 248 KGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEI 307 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G++ + + LEKL GR E VG G Y Sbjct: 308 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAY 367 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 368 VDYAHKPDALENVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 427 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ G E +R +AIR A+ ML D L+VAGKGHE Sbjct: 428 PRSEEPAAIRAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKGHE 478 >gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis B2/94] gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M292/94/1] gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti B1/94] Length = 488 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya] Length = 490 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis ATCC 23445] gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 3 str. Tulya] gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC 23445] gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella microti CCM 4915] Length = 488 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ovis ATCC 25840] Length = 499 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475 >gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026] Length = 490 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo] gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 499 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN 475 >gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. F5/99] Length = 488 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 237/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN 464 >gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 490 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 5 str. 513] Length = 488 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELP--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 490 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475 >gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str. 2308 A] gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Brucella abortus bv. 5 str. B3196] Length = 499 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475 >gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 488 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella tribocorum CIP 105476] gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella tribocorum CIP 105476] Length = 483 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/448 (50%), Positives = 296/448 (66%), Gaps = 7/448 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR + G++FVA+ G K DG +I AI +GA AIV L+D S Sbjct: 20 EITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLEDLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L V N R L+L A+R YG PE ++AVTGTSGK+SV SF++QI GL + IG Sbjct: 75 -VPVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S D LTTP P+ L + L +S +GVTH ++EASSHGLDQ RLDG++L AG Sbjct: 134 TVGVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTAG 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH+ + Y AKMRLF+ LLP +PA+I+ADD YSK+V+ A RV Sbjct: 194 AFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRV 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G +G FI + +V +KQ + VE K + F PL G+FQV NALVAAGL IA G+ Sbjct: 254 LTIGRKGHFITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIATGL 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V LE L PGR EFVG + +Y+DYAH +LE +L ++R T GR+IVV Sbjct: 314 SPDKVFSALETLQGAPGRLEFVGKTEKNAPVYIDYAHKPEALEQVLLSVRPFTQGRLIVV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRDQGKR +MGKIA D ADI IVTDDNPR+E+PEKIR +I+ +P IE +R E Sbjct: 374 FGCGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPTAIEIADRGE 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AI ++ +L D L++AGKGHE I+ Sbjct: 434 AISYSVGLLKAGDTLIIAGKGHEDGQII 461 >gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] Length = 490 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] Length = 499 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475 >gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis biovar Abortus 2308] gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 6 str. 870] gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 4 str. 292] gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-acetylmuramyl-tripe [Brucella melitensis biovar Abortus 2308] gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] Length = 488 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 314/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis M5-90] Length = 490 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis ATCC 23457] gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC 23457] Length = 488 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] Length = 499 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 12 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 64 ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +DYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 475 >gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/452 (50%), Positives = 302/452 (66%), Gaps = 7/452 (1%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I V+SDSR ++ G++F A+ G K DG F+ A+ +GA AIV + D Sbjct: 21 EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIVAGKDTVIAD----- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L VD+ R L++ A++ YGK P+ ++AVTGTSGK+SVASF +QI +G + Sbjct: 76 -AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T S D N LTTP P+ L + L+ L+ +GVTH ++EASSHGLDQ RLDG+KL Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRLDGVKLA 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 AG+FTNLGRDH+DYH T + Y AKMRLF LLPK +PAII++DD +S + ++ A AGC Sbjct: 195 AGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGC 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V +VG +G FI LK+V +Q V + + + F+ PL G+FQV NALVAAGL + Sbjct: 255 DVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ +A + L L PGR + VG G YVDYAH +LE +L ++R T+GR+I Sbjct: 315 GVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEALENVLTSVRPFTTGRVI 374 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 VVFGCGGDRD+GKRPIMG+IA LAD+AIVTDDNPRSE P +IR+EI+ PG E G+R Sbjct: 375 VVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAAPGATEIGDR 434 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 435 REAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] Length = 490 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ochrobactrum anthropi ATCC 49188] gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi ATCC 49188] Length = 490 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 228/450 (50%), Positives = 302/450 (67%), Gaps = 7/450 (1%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I V+SDSR ++ G++F A+ G K DG F+ A+ +GA AI+ ++ D Sbjct: 21 EVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADAVKRGASAIIAGKDTAIAD----- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L VD+ R L++ A++ YGK P+ ++AVTGTSGK+SVASF +QI +G + Sbjct: 76 -AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 134 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T S D N LTTP P+ L + L+ L+ +GVTH ++EASSHGLDQ RLDG+KL Sbjct: 135 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAAMEASSHGLDQRRLDGVKLA 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 AG+FTNLGRDH+DYH T + Y AKMRLF LLPK +PAII++DD +S + ++ A AGC Sbjct: 195 AGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAIIFSDDHFSAQAIEAATLAGC 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V +VG +G FI LK+V +Q V + + + F+ PL G+FQV NALVAAGL + Sbjct: 255 DVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEIFEIELPLAGDFQVANALVAAGLAMVT 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ +A + L L PGR + VG G YVDYAH +LE +L ++R T+GR+I Sbjct: 315 GVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEALENVLTSVRPFTTGRVI 374 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 VVFGCGGDRD+GKRPIMG+IA LAD+AIVTDDNPRSE P +IR+EI+ PG E G+R Sbjct: 375 VVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDNPRSEVPAQIRSEIMAAAPGATEIGDR 434 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EAI TA+ M+ D LVVAGKGHE IV Sbjct: 435 REAIFTAVSMMQAGDTLVVAGKGHEEGQIV 464 >gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M13/05/1] gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M644/93/1] Length = 490 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A A C V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella canis ATCC 23365] gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis bv. 3 str. 686] gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella suis 1330] gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC 23365] Length = 488 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 488 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 235/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEIT------LFNELA--SGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M644/93/1] gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella ceti M13/05/1] Length = 488 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG +F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AIV ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A A C V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Sinorhizobium meliloti 1021] gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti AK83] gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti BL225C] Length = 486 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/496 (46%), Positives = 314/496 (63%), Gaps = 11/496 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ DL +FPEL QL +I +++DSR ++ G +FVA+ G+K DG +I Sbjct: 1 MKITDLAGSNFPELSAQLK---GDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A+V + + + P+ + + R+FL+ AS YG+ PE ++AV Sbjct: 58 ADALSRGASAVVAGTGTPAE-------AGAPVFAISDPRRFLAKAASSFYGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SG S+ IG T ++ + LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQRRLDGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQ+ NALVAAGL ++ GI + LE+L GR E VG G Y Sbjct: 291 YEIHVPLAGDFQIANALVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L +L+++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALANVLESVRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRAEI+ G E G+R EAIR A+ ML D L+VAGKGHE V + Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470 Query: 480 KKMSVDCDIIREILGL 495 S ++ + + GL Sbjct: 471 LPFSDHAEVRKALGGL 486 >gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bartonella grahamii as4aup] Length = 483 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/449 (50%), Positives = 294/449 (65%), Gaps = 9/449 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR + G++FVA+ G K DG +I AI +GA AIV L+D Sbjct: 20 EITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTDCHAVLEDLP----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 PIL V N R L+L A+R YG PE ++AVTGTSGK+SV SF++QI G + IG Sbjct: 75 -VPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASIG 133 Query: 149 PTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +S Q+ LTTP P+ L + L +S +GVTH ++EASSHGLDQ RLDG++L A Sbjct: 134 TVGVVSP-KQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTA 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G+FTNLGRDH+DYH + Y AKM+LF+ LLP +PA+I+ADD YS++V+ A R Sbjct: 193 GAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRR 252 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VL++G +G+FI + +V +KQ + VE + F PL G+FQV NAL+AAGL IA G Sbjct: 253 VLTIGRKGQFITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMAAGLAIATG 312 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + V LE L PGR EFVG +Y+DYAH +LE +L ++R T GR+IV Sbjct: 313 VSPRKVFSALETLQGAPGRLEFVGKTENNAPVYIDYAHKPEALEQVLLSVRPFTQGRLIV 372 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRDQGKRP+MGKIA D ADI IVTDDNPR+E PEKIR +I+ +P IE +R Sbjct: 373 VFGCGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQAVPTAIEIADRG 432 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EAI A+E+L D L++AGKGHE I+ Sbjct: 433 EAISYAVELLKAGDTLIIAGKGHEDGQII 461 >gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CNPAF512] Length = 486 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 237/471 (50%), Positives = 309/471 (65%), Gaps = 13/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P+ + I+ +SSDSR + G FVA+ G K DG FI Sbjct: 1 MKLRDLAGDQFPELEAQLE-GPVGLLD--ISGLSSDSRKVAPGNAFVAVAGTKADGAGFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+GA + S Q A I P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 58 ADAAARGAVVAIAS-----QPVDAAI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 169 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + +K A +AG V +VG +G ++ LK+V +KQ I + + Sbjct: 229 KGAPAVIFADDPWSAQAVKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ + LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IR+EI+ E G+R AIR A+ ML D L+VAGKGHE Sbjct: 409 PRSEEPAAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHE 459 >gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium vitis S4] gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase [Agrobacterium vitis S4] Length = 486 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 240/476 (50%), Positives = 314/476 (65%), Gaps = 13/476 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL DF +L L P+ + +I +++DSR ++ G +FVA+ G K DG F+ Sbjct: 1 MKLRDLASGDFGDLTGPLD-GPVG--DVEITGITADSRKVEPGMLFVALQGVKADGAGFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA A++ S + P LV D R L+L A+R+Y PE ++AV Sbjct: 58 ADAVARGAAAVLSGSHLDIA---------VPALVTDQPRHALALLAARVYSGQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +GL+S QIG T IS D LTTP P+ L + L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQ 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T Y AKMRLF+ LLP Sbjct: 169 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S E ++ A AG V +VG G F+ LK+V +KQ I +G Sbjct: 229 KGSPAVIFADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQ+ NALV+AGL I+ G++++L L+ LEKL GR E VG + G Y Sbjct: 289 FEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L +R TSGRIIVVFGCGGDRD+GKRPIMG+IA LADI IVTDDN Sbjct: 349 VDYAHKPDALEKVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLADIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PRSE IR+E++ P IE G+R +AIR A+ ML D L+VAGKGHE IV Sbjct: 409 PRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKGHEEGQIV 464 >gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium medicae WSM419] gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae WSM419] Length = 486 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 232/496 (46%), Positives = 312/496 (62%), Gaps = 11/496 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++DL FPEL QL +I +++DSR ++ G +FVA+ G K DG +I Sbjct: 1 MKIRDLAGSSFPELSAQLK---GDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+++GA A+V + SA + + + R+FL+ +S +G+ PE ++AV Sbjct: 58 TDALSRGASAVVAGT-------SARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI SG S+ IG T +S A+ LTTP P+ L K L+ L+ Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELAD 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+ L A +FTNLGRDH+DYH T + Y +KMRLF LLP Sbjct: 171 EGVTHAAMEASSHGLDQQRLDGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLP 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + + A AG V +VG G FI LK+V +KQ + V Sbjct: 231 KGSPAVIFADDQWSADAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ PL G+FQV NALVAAGL ++ GI + LE+L GR E VG G Y Sbjct: 291 YEIHVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAY 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L +L+++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 351 VDYAHKPDALSNVLESLRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSE PE IRAEI+ G E G+R EAIR A+ ML D L+VAGKGHE V + Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKGHEEGQTVGSVT 470 Query: 480 KKMSVDCDIIREILGL 495 S ++ + + GL Sbjct: 471 LPFSDHAEVRKALGGL 486 >gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 486 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 231/471 (49%), Positives = 311/471 (66%), Gaps = 13/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR + G +FVA+ G K DG FI Sbjct: 1 MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVAPGNVFVAVAGTKADGAGFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S A I ++ P+ V R+FLS+ A+R +GK P+ ++AV Sbjct: 58 VDAAGRGAAVAIASQA---------IDASIPVFAVKEPRRFLSIAAARFHGKQPDTMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L + L+ L+ Sbjct: 109 TGTAGKTSVASFTRQIWAYAGHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAG 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T ++Y AKMRLF+ LLP Sbjct: 169 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + +K A +AG + +VG +G ++ LK+V +KQ I + G+ Sbjct: 229 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+++ + + LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ E +R AIR A+ ML D L+VAGKGHE Sbjct: 409 PRSEEPASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKGHE 459 >gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella quintana str. Toulouse] Length = 483 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/466 (47%), Positives = 304/466 (65%), Gaps = 12/466 (2%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F E I +F M+ I +++DSR + G++FVA+ GN++DG +I AI +GA+A Sbjct: 7 FTECIENSRLFSME-----ITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQA 61 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 IV L++FS P+L V + R L++ A+R YG PE ++AVTGTSGK+SV Sbjct: 62 IVTDCNAVLENFS------VPVLRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVV 115 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 SF++QI GL + IG +S D+ TTP P+ L + L +S++GVTH ++EA Sbjct: 116 SFLRQIWTHVGLCAASIGTVGIVSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEA 175 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGLDQ RLDG++L A +FTNLGRDH+DYH+ + Y AKMRLF+ LLP+++PA+++AD Sbjct: 176 SSHGLDQSRLDGVRLTAAAFTNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFAD 235 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 D YS++V+ A R+L++G +GKFI + ++ KQ V VE + F PL G Sbjct: 236 DIYSQKVIDIVTKARRRILTIGRKGKFITINRIEHQRLKQCVECRVENNIYTFDLPLAGN 295 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 FQV NAL+AAGL IA G+ V LE L PGR E VG +Y+DYAH +L Sbjct: 296 FQVTNALMAAGLAIATGVSPKKVFHSLEILQGAPGRLELVGKTENNAPVYIDYAHKPEAL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L ++R T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI IVTDDNPR+E PEKIR Sbjct: 356 EQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEMPEKIR 415 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I+ P IE +R EAI A+ +L +D L++AGKGHE ++ Sbjct: 416 KDILQAAPRAIEIADRGEAISYAVGLLKAEDTLIIAGKGHENGQVI 461 >gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Agrobacterium tumefaciens str. C58] gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Agrobacterium tumefaciens str. C58] Length = 489 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 234/476 (49%), Positives = 316/476 (66%), Gaps = 13/476 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL +L + + E I +++DSR G +FVA+ G K DG ++ Sbjct: 1 MNLRDISGNAFPEL-KELLLSEIGAIE--IGGITADSRKAAPGSLFVAVAGTKADGAAYV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA A+V A + ++ P+LVV + R +LSL ASR YGK P+ ++AV Sbjct: 58 KDAVAKGAVAVVSGHA---------VEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASFV+QI +G ++ QIG T I+ +D LTTP P+ L L+ L+S Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+ L A FTNLGRDH+DYH T + Y AKMRLF+ L+ Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + + A AG V +VG G+++ LK+V +KQ + + +G Sbjct: 229 KGAPAVIFADDPWSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+ +A L+ LEKL GR E VG G Y Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R TSGRII VFGCGGDRD+GKRPIMG++A L+DI IVTDDN Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PRSED IR+E++ G +E G+R EAIR A+ ML+ D L+VAGKGHE IV Sbjct: 409 PRSEDAATIRSEVMAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIV 464 >gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella bacilliformis KC583] gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella bacilliformis KC583] Length = 483 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 222/456 (48%), Positives = 290/456 (63%), Gaps = 7/456 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI +S++SR I G++FVA+ GNK DG +I AI +GA +V + ++ S Sbjct: 20 KITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L V + R L+L A+R Y PE +LAVTGTSGK+SV SF++QI Q G + IG Sbjct: 75 -VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S D LTTP P+ L + L L+ +GVTH ++EASSHGLDQ RLDG+ L A Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGVNLAAA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PA+I ADD YS+EV+ AG R Sbjct: 194 AFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRA 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G +G+FI + ++ +KQ V +E + F PL G FQV NAL+AAGL I G Sbjct: 254 LTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTGS 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 S V L+KL PGR E V +YVDYAH +LE +L R T GR+IVV Sbjct: 314 SSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIVV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRDQGKRP+MGKIA+D ADI IVTDDNPR+E+PEKIR +I+ PG +E +R E Sbjct: 374 FGCGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRSE 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 AI A+ +L D L++AGKGHE +V + S Sbjct: 434 AIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFS 469 >gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Rhizobium leguminosarum bv. viciae 3841] Length = 489 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 230/471 (48%), Positives = 309/471 (65%), Gaps = 13/471 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSR + G FVA+ G K DG FI Sbjct: 4 MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRKVMPGNAFVAVAGTKADGAGFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S A + ++ P+ V R+FLS+ A+R +G+ P+ ++AV Sbjct: 61 VDAAGRGAAIAIASQA---------VDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAV 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L L+ L+ Sbjct: 112 TGTAGKTSVASFTRQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAG 171 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 172 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 231 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K SPA+I+ADD +S + +K A +AG + +VG +G ++ LK+V +KQ I + G+ Sbjct: 232 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL ++ G+++ + + LEKL GR E VG G Y Sbjct: 292 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAY 351 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 352 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 411 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+P IRAEI+ E +R AIR A+ ML D L+VAGKGHE Sbjct: 412 PRSEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKGHE 462 >gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2] Length = 490 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG F Sbjct: 3 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 55 ADAVKRGAVAIIAGKDMAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 466 >gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium opportunistum WSM2075] Length = 484 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 227/474 (47%), Positives = 311/474 (65%), Gaps = 21/474 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL+DL I P++ + ++ +SSDSR ++ G IF A+ G+K DG Sbjct: 1 MKLRDLD-----------GILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGS 49 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 + A +GA AIV + ++ P+L VD+ R L+L A+R +G P+ + Sbjct: 50 AYAADAARRGAVAIVTAKGSTVGGHP------IPVLAVDDPRLALALGAARFFGNQPQTM 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176 +AVTGTSGK+SVA+F +QI +++G ++ IG T ++ + LTTP P+ L + L Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLKE 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L+ GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ Sbjct: 164 LADAGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDT 223 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LLPK +PA+I+ADD +S ++ A AG VL+VG G F+ LK+V ++Q+ + Sbjct: 224 LLPKGAPAVIFADDPWSAPTIQAARAAGLEVLTVGRHGDFLRLKRVEHERHRQRAEVEAN 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G ++ PL G+FQ+ NALV+AGL I+ GI +A L LEKL PGR + VGT + G Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGIPTAKALMSLEKLKGAPGRLDLVGTTANGA 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVT Sbjct: 344 PVYVDYAHKPDALENVLTSVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE Sbjct: 404 DDNPRSEVPETIRAAIMAAAPGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKGHE 457 >gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1] Length = 488 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 236/478 (49%), Positives = 313/478 (65%), Gaps = 15/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++ L N+L+ P + E +I ++SDSR +Q G++F A+ G K DG F Sbjct: 1 MKLKEI------ALFNELA--PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ +GA AI+ ++ D + P+L VD+ R L++ A++ YGK PE ++AV Sbjct: 53 ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASF +QI +G + IG T S D N LTTP P+ L + L+ L+S Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T Y AKMRLF LLP Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PAII+ADD +S + ++ A AGC V +VG +G FI LK+V +Q V + + + Sbjct: 227 KGAPAIIFADDQFSAQAVEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ PL G+FQV NALVAAGL + G+ +A + L L PGR + VG G Y Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH +LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVTDDN Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSE P +IR+EI+ G E G+R EAI TA+ M+ D LVVAGKGHE IV N Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN 464 >gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Agrobacterium sp. H13-3] Length = 486 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 233/476 (48%), Positives = 319/476 (67%), Gaps = 13/476 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+D+ FPEL N+L + + E I +++DSR G +FVA+ G K DG ++ Sbjct: 1 MNLRDISGTAFPEL-NELLLSEIGAIE--IGGITADSRKAAPGSLFVAVAGTKADGAAYV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA A+V A + ++ P+L V + R +LSL ASR YGK PE ++AV Sbjct: 58 KDAVAKGAVAVVSGHA---------VDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASFV+QI +G ++ QIG T I+ +D LTTP P+ L L+ L++ Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAA 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH ++EASSHGLDQ RLDG+KL A FTNLGRDH+DYH T + Y AKMRLF+ L+ Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K +PA+I+ADD +S + ++ A +AG V +VG +G ++ LK+V +KQ + + +G Sbjct: 229 KGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVI 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G+FQV NALVAAGL ++ G+ +A ++ LEKL GR E VG G Y Sbjct: 289 HEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAY 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++LE +L ++R TSGRII VFGCGGDRD+GKRPIMG++A L+DI IVTDDN Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PRSED IR+E++ PG +E G+R EAIR A+ +L+ D L+VAGKGHE IV Sbjct: 409 PRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKGHEEGQIV 464 >gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis] Length = 483 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/456 (48%), Positives = 288/456 (63%), Gaps = 7/456 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI +S++SR I G++FVA+ GNK DG +I AI +GA +V + ++ S Sbjct: 20 KITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L V + R L+L A+R Y PE +LAVTGTSGK+SV SF++QI Q G + IG Sbjct: 75 -VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S D LTTP P+ L + L L+ +GVTH ++EASSHGL+Q RLDGI L A Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGINLAAA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PA+I ADD YS+EV+ AG R Sbjct: 194 AFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGRRA 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G +G+FI + ++ +KQ V +E + F PL G FQV NAL+AAGL I G Sbjct: 254 LTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLAITTGS 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 S V L+KL PGR E V +YVDYAH +LE +L R T GR+IVV Sbjct: 314 SSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPGRLIVV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRDQ KRP+MGK+ LD ADI IVTDDNPR+E+PEKIR +I+ PG +E +R E Sbjct: 374 FGCGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEIADRSE 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 AI A+ +L D L++AGKGHE +V + S Sbjct: 434 AIYYAVGLLEAGDTLIIAGKGHENGQVVGQETRPFS 469 >gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bartonella henselae str. Houston-1] Length = 483 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 214/448 (47%), Positives = 298/448 (66%), Gaps = 7/448 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR I G+IFVA+ G+++DG +I A+ +GA+AIV L++ S Sbjct: 20 EITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVVLENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L V + R L++ A+R YG PE ++AVTGTSGK+SV SF++QI + GL + IG Sbjct: 75 -VPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S D LTTP P++L + LS ++++GVTH ++EASSHGLDQ RLDG++L A Sbjct: 134 TLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRLDGVRLTAA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH + + Y AKMRLF+ LLP+++ A+I+ADD YS++V+ A V Sbjct: 194 AFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRHV 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G +G+FI + ++ +KQ V +E + F PL G+FQV NAL+AAGL I+ GI Sbjct: 254 LTIGRKGQFITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMAAGLAISTGI 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V LE L PGR E VG +Y+DYAH +LE +L ++R T GR+I+V Sbjct: 314 SPDKVFRSLETLQGAPGRLELVGKTENNASVYIDYAHKPEALEQVLLSVRPFTQGRLILV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRDQGKRP+MGKIA + ADI I+TDDNPR+E P KIR +I+ P IE +R E Sbjct: 374 FGCGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQAAPKAIEIADRGE 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AI A+ +L D L++AGKGHE I+ Sbjct: 434 AITYAVGLLKAGDTLIIAGKGHENGQII 461 >gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium sp. BNC1] gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chelativorans sp. BNC1] Length = 483 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 223/445 (50%), Positives = 300/445 (67%), Gaps = 8/445 (1%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I+ ++SDSR + AG +F A+ G+K DG + A +GA AI+ ++ D Sbjct: 19 ETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAGRGAVAIIARPG-TVGDV---- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ D+ R L+L ++RLYG P ++AVTGTSGK+SVA+F +QI +++GL++ Sbjct: 74 --GVPVIEADDPRHVLALASARLYGAQPATMVAVTGTSGKTSVAAFTRQIWEKAGLAAAS 131 Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T ++ + LTTP P+ L K L L+ GVTH S+EASSHGLDQ RLDG+KL Sbjct: 132 IGTTGVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHASMEASSHGLDQRRLDGVKLA 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 AG FTNLGRDH+DYH T + Y +KMRLF+ LLPK +PA+I+ADD +S+ K A AG Sbjct: 192 AGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPAVIFADDPWSEPTEKVALAAGL 251 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++L+VG +G F+ +K+V ++Q+ I EG +D + PL G+FQV NALVAAGL I+ Sbjct: 252 QLLTVGRRGTFLTIKRVEHERHRQRTEIEHEGMIYDIMLPLAGDFQVGNALVAAGLAIST 311 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + + LE L GR E GT G +IYVDYAH ++LE +L+ +R T+GR+I Sbjct: 312 GLPADKAVAALEHLKGASGRLELTGTTEDGAQIYVDYAHKPDALENVLQAVRPFTTGRVI 371 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 VVFGCGGDRD GKRPIMG+IA LAD+ IVTDDNPRSE P +IR I+ +P E G+R Sbjct: 372 VVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDNPRSEVPAEIRRAILEAVPEATEIGDR 431 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHE 470 EAIRTA+ MLN D L+VAGKGHE Sbjct: 432 REAIRTAVAMLNSGDTLIVAGKGHE 456 >gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. 1-1C] Length = 484 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/449 (47%), Positives = 296/449 (65%), Gaps = 8/449 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR + G++FVA+ GN+ DG ++ AI +GA I+ + + ++ S Sbjct: 20 EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFVFENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V + R L++ A+R Y PE ++AVTGTSGK+SV SFV+QI + G + IG Sbjct: 75 -IPVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206 +S D LTTP P+ L + L +++ +GVTH + EASSHGLDQ R+DG+ L A Sbjct: 134 TVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAA 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH++ + YF+AKMRLF LLP+++PA+I+ADD YS++V+ A + Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQ 253 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VL++G GKFI L +V KQ+V + + F PL G+FQV NAL+AAGL IA Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 S +V LEKL PGR E VG G IYVDYAH +LE +L ++R T GR+++ Sbjct: 314 APSDMVFRSLEKLQGAPGRLELVGNTEDGAPIYVDYAHKPEALEQMLLSVRPFTQGRLVL 373 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E PEKIR +I+ +P IE +R Sbjct: 374 VFGCGGDRDQGKRALMGKIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRG 433 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +AI A+E+L D L+VAGKGHE I+ Sbjct: 434 QAIEYAVELLKAGDTLIVAGKGHENGQII 462 >gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella clarridgeiae 73] Length = 483 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/447 (48%), Positives = 291/447 (65%), Gaps = 7/447 (1%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S+DSR I G++FVA+ GN+ DG ++ AI +GA IV + ++ S Sbjct: 21 ITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFVFEN------SL 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V N R L++ A+R Y PE ++AVTGTSGK+SV SF++QI + G + IG Sbjct: 75 VPVVRVLNVRHSLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWKYVGCCAASIGT 134 Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +S D LTTP P+ L + L ++++GVTH ++EASSHGLDQ R+DG++L A + Sbjct: 135 VGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRIDGVRLAAAA 194 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNLGRDH+DYH+ + YF+AKMRLF LLP+++PA+I+ADD YS++V+ A +VL Sbjct: 195 FTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHRQVL 254 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 ++G GKFI L +V KQ V + + F PL G+FQV NAL+AAGL IA Sbjct: 255 TIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFDLPLVGDFQVANALMAAGLAIATRAS 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +V LEKL PGR E VG G +YVDYAH +LE +L ++R T GR+I+VF Sbjct: 315 PDMVFRSLEKLQGAPGRLELVGKTEDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLILVF 374 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GCGGDRDQGKR +MG IA + ADI IVTDDNPR+E PEKIR +I+ +P IE +R EA Sbjct: 375 GCGGDRDQGKRALMGTIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRAEA 434 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475 I A+ +L D L+VAGKGHE I+ Sbjct: 435 IYYAVRLLKTGDTLIVAGKGHENGQII 461 >gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella schoenbuchensis R1] Length = 483 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 215/448 (47%), Positives = 287/448 (64%), Gaps = 7/448 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +SSDSR + G++FVA+ G + DG ++ AI +GA IV +L+ Sbjct: 20 EITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTDYNCALEGVY----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+L V + R L++ A+R YG PE + AVTGTSGK+SV SFV+QI + +G + IG Sbjct: 75 -VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S D LTTP P+ L + L ++ +GVTH ++EASSHGLDQ RLDG++L A Sbjct: 134 TVGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVRLAAA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH + Y AKMRLF+ LLP ++PAII+ADD YS++V+ AG V Sbjct: 194 AFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAGRPV 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L++G GKFI + ++ KQ V + + F PL GEFQV NAL+AAGL IA + Sbjct: 254 LTIGRSGKFITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAIATNV 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + V L+KL PGR E VG +YVDYAH +LE +L ++R T GR+I+V Sbjct: 314 PPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEALEQVLLSVRPFTLGRLILV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRDQGKRP+MGKIA ADI IVTDDNPR+EDP KIR +I+ G +E +R E Sbjct: 374 FGCGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAASGAMEIADRGE 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AI A+ +L D L++AGKGHE I+ Sbjct: 434 AIDYAVRLLEAGDTLIIAGKGHENGQII 461 >gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 484 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 230/474 (48%), Positives = 308/474 (64%), Gaps = 21/474 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL+DL I P++ + ++ +SSDSR ++AG +F A+ G K DG Sbjct: 1 MKLRDLA-----------GILPVEGIASVDLEVTGISSDSRQVKAGVVFFALAGTKADGA 49 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 ++ A A+GA AIV ++ P+L VD+ R L+ A+R +GK PE + Sbjct: 50 VYAEDAAARGAAAIVAGKGSTIAGLP------VPVLAVDDPRLALAQSAARYFGKQPEIM 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176 +AVTGTSGK+SVA+F +QI +++G ++ IG T ++ D LTTP P+ L + L Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQE 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L+ GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ Sbjct: 164 LADAGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDT 223 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LLPK +PA+I+ADD +S A AG VL+VG G F+ LK+V ++Q+ + + Sbjct: 224 LLPKGAPAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDFLRLKRVEHERHRQRAEVEAD 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G ++ PL G+FQ+ NALV+AGL I+ G A L LEKL PGR + VGT G Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGA 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +YVDYAH ++LE +L ++R T+GR+IVVFGCGGDRD+GKRPIMG+IA LAD+ IVT Sbjct: 344 PVYVDYAHKPDALENVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE Sbjct: 404 DDNPRSEVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGKGHE 457 >gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella rochalimae ATCC BAA-1498] Length = 484 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/449 (47%), Positives = 293/449 (65%), Gaps = 8/449 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR + G++FVA+ GN+ DG ++ AI +GA I+ + + ++ S Sbjct: 20 EITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFVFENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V + R L++ A+R Y PE ++AVTGTSGK+SV SFV+QI + G + IG Sbjct: 75 -IPVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206 +S D LTTP P+ L + L +++ +GVTH + EASSHGLDQ R+DG+ L A Sbjct: 134 TVGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAA 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH++ + YF+AKMRLF LLP+++PA+I+ADD YS++V+ A + Sbjct: 194 AAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQ 253 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VL++G GKFI L +V KQ V + + F PL G+FQV NAL+AAGL IA Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQCVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +V LEKL PGR E VG G +YVDYAH +LE +L ++R T GR+I+ Sbjct: 314 APPDMVFRSLEKLQGAPGRLELVGNTEDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLIL 373 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRDQGKR +MGKIA + ADI IVTDDNPR+E PEKIR +I+ +P IE +R Sbjct: 374 VFGCGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTEAPEKIRKDILQAVPEAIEIADRG 433 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +AI A+ +L D L+VAGKGHE I+ Sbjct: 434 QAIEYAVGLLKAGDTLIVAGKGHENGQII 462 >gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mesorhizobium loti MAFF303099] gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mesorhizobium loti MAFF303099] Length = 484 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/474 (47%), Positives = 308/474 (64%), Gaps = 21/474 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL+DL + P++ + ++ +SSDSR ++ G +F A+ G K DG Sbjct: 1 MKLRDLA-----------GVLPVEGTASADLEVTGISSDSRQVKPGVVFFALAGTKADGA 49 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 + A +GA A+V + S+ P+L VD+ R L+L A+R +GK P + Sbjct: 50 AYAADAARRGALAVVAGKSNSVAGLP------VPVLTVDDPRLALALSAARYFGKQPRTM 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSY 176 +AVTGTSGK+SVA+F +QI +++G ++ IG T ++ + LTTP P+ L + L Sbjct: 104 VAVTGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRE 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L+ GVT+ S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y AK+RLF+ Sbjct: 164 LADAGVTYASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDT 223 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LLPK +PA+I+ADD +S ++ A AG VL+VG G F+ LK+V ++Q+ + E Sbjct: 224 LLPKGAPAVIFADDPWSAPTIQAAQAAGLNVLTVGRHGDFLTLKRVEHERHRQRAEVEAE 283 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G ++ PL G+FQ+ NALV+AGL I+ G A L LEKL PGR + VGT G Sbjct: 284 GVLYEIDLPLAGDFQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGA 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKRPIMG+IA LAD+ IVT Sbjct: 344 PVYVDYAHKPDALENVLASVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DDNPRSE PE IRA I+ PG IE G+R +AI A+ ML+ D L+VAGKGHE Sbjct: 404 DDNPRSEVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKGHE 457 >gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hoeflea phototrophica DFL-43] Length = 489 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 220/472 (46%), Positives = 306/472 (64%), Gaps = 12/472 (2%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L LI P ++ S + + + +++DSR ++ +F A+ G K DG F+ Sbjct: 1 MNLSALISALPPGTLSAPSSANLDF---SVTGLTADSRVVEPSNLFFALAGVKTDGARFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 +AI++GA AIV +S + D A +RS+ P L+ A+ +G P + A Sbjct: 58 QEAISKGAAAIVAASGAGISTDGVAVLRSDDPR-------LALARMAAAFFGPQPRVMAA 110 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+SVASF++QI +G + +G T ++ ++ LTTP P+ L + L+ L+ Sbjct: 111 VTGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELA 170 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S+GVTH ++EASSHGLDQ RLDG+ L FTNLGRDH+DYH T + Y AKMRLF+ LL Sbjct: 171 SEGVTHAAMEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLL 230 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 PK +PA+I+ADD +S++ ++ A AG RVL+VG +G F+ LK+V + +KQ + ++G+ Sbjct: 231 PKGAPAVIFADDPWSEQAVEVAERAGARVLTVGRKGGFLSLKRVEHLRHKQIAEVHLDGR 290 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F+ PL G+FQ+ NALVAAG+ IA G + + LE L GR E VG+ G Sbjct: 291 IFEIHVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPA 350 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YVDYAH ++E +L +R T+GRII+VFGCGGDRD+GKRPIMG IA LAD+ IVTDD Sbjct: 351 YVDYAHKPEAMENVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLADVVIVTDD 410 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPR+EDP +IR+EI+ PG E +R EAIRTA+EML D L+VAGKGHE Sbjct: 411 NPRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKGHE 462 >gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fulvimarina pelagi HTCC2506] Length = 483 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/467 (45%), Positives = 290/467 (62%), Gaps = 8/467 (1%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + L N ++ P + +I+ ++ DSR + G++FVA+ G+K DG FI A A+GA Sbjct: 2 NLARLANGIAHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAV 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A++ SS A + ++ P++ DN R + A+R Y K PE ++AVTGT+GK+S+ Sbjct: 62 AVLTSS-------DAVVETDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSI 114 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ASF++QI +GL + IG T +S D LTTP P+ LA+ L+ L +GVTH S+E Sbjct: 115 ASFLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASME 174 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHG+DQ RLDG++L AG FTNLG DH+DYH ++YF AKM LF LLPK +PA+I Sbjct: 175 ASSHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD +S ++ A GC V +VG G + LK++ +Q + + PL G Sbjct: 235 DDQWSGRAIEVATGVGCDVRTVGRNGSLLALKRLEHERERQVAEVKTPDGIQRVVLPLAG 294 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 EFQ+ NALVAAGL I G LE LE L GR E G + G ++VDYAH + Sbjct: 295 EFQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAGGVPVFVDYAHKPEA 354 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R T+GR+I+V GCGGDRD+ KRP+MG+IA LAD+ IVTDDNPRSEDP I Sbjct: 355 LEHVLRAVRPFTTGRVILVMGCGGDRDKTKRPMMGEIANRLADVVIVTDDNPRSEDPAVI 414 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R+EI+ E G+R EAIR A+ D ++VAGKGHET +V Sbjct: 415 RSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKGHETGQMV 461 >gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase [Bartonella sp. AR 15-3] Length = 484 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/449 (46%), Positives = 290/449 (64%), Gaps = 8/449 (1%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR + G++FVA+ GN+ DG ++ AI +GA I+ + + ++ S Sbjct: 20 EITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFVFENLS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V R L++ A+R Y PE ++AVTGTSGK+SV SF++QI + G + IG Sbjct: 75 -IPVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIG 133 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIA 206 +S D LTTP P+ L + L +++ +GVTH + EASSHG+DQ R+DG+ L A Sbjct: 134 TVGVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLAA 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH + YF+AKMRLF +LP+++PA+I+ADD YS++V+ A + Sbjct: 194 AAFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVRQAHRK 253 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VL++G GKFI L +V KQ+V + + F P G+FQV NAL+AAGL IA Sbjct: 254 VLTIGRTGKFITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAAGLAIATN 313 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +V LEKL PGR E VG G +YVDYAH +LE +L ++R T GR+I+ Sbjct: 314 APPDMVFRSLEKLQGPPGRLELVGKTKDGAPVYVDYAHKPEALEQVLLSVRPFTQGRLIL 373 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD+GKR +MGKIA + AD+ IVTDDNPR+E PEKIR +I+ +P IE +R Sbjct: 374 VFGCGGDRDRGKRALMGKIAENKADVVIVTDDNPRTEAPEKIRKDILQVVPEAIEIADRG 433 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +AI A+ +L D L+VAGKGHE I+ Sbjct: 434 KAIDYAVRLLKAGDTLIVAGKGHENGQII 462 >gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aurantimonas manganoxydans SI85-9A1] Length = 482 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 205/443 (46%), Positives = 287/443 (64%), Gaps = 8/443 (1%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG++F A+ G++ DG F+ A A+GA AI+ A I + P+L Sbjct: 27 DSRETGAGFLFAALAGSRADGAGFVADAEARGAAAILAGE-------GAEIATTLPVLRA 79 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS- 154 + R+ ++L A+R +G PE+++A+TGT+GK+S+A+F +QI R GL++ +G T +S Sbjct: 80 ADPRRAIALMAARFHGAQPEHVVAITGTAGKTSIATFTRQIWARCGLAAASVGTTGVVSP 139 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 S + LTTP PI L + ++ L+ +GVTH ++EASSHG+DQ RLDG++L A +F+NLG Sbjct: 140 SRDEYGSLTTPDPIALMRLMAELAGEGVTHAAMEASSHGIDQRRLDGVRLAAAAFSNLGH 199 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH ++YF AKMRLF LLPK +PA+I+ADD +S + A + G +V++VG G Sbjct: 200 DHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFADDRWSGRAIDVATSVGAKVMTVGRGG 259 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 F+ LK++ +Q I EG+ + PL GEFQ+ NALVAAGL IA G+ +A L Sbjct: 260 NFLTLKRLELERQRQIAEIEAEGRIHRVVLPLAGEFQMANALVAAGLAIATGVATADALA 319 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 LE L GR + GT + G ++VDYAH +LE +L +R T+GR++VV GCGGDR Sbjct: 320 ALEHLKGAAGRLDLAGTTADGAPVFVDYAHKPEALENVLAAVRPFTTGRVVVVIGCGGDR 379 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D+ KRP+MG+IA LADI IVTDDNPRSE+P IRAEI+ G E G+R AIR A+ Sbjct: 380 DRAKRPMMGEIAARLADIVIVTDDNPRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVA 439 Query: 455 MLNKQDVLVVAGKGHETVHIVTN 477 D +V+AGKGHE V Sbjct: 440 SARTGDTVVIAGKGHEVGQTVAG 462 >gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Ahrensia sp. R2A130] Length = 1015 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/498 (43%), Positives = 297/498 (59%), Gaps = 17/498 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ PE ++ + + I V+ DSR ++ G +F+A+ G+ +DG F+ Sbjct: 1 MRLNDLLGGGLPE-ASRDDVGALD-----ITNVTVDSRKVKPGGLFIAVSGSAQDGAKFV 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATI-RSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 P A+ GA A+ L D A I + + P+L N RK L+ ASR + + PE I A Sbjct: 55 PMAVENGAVAV-------LADRDADIGKISVPVLRNGNIRKALANIASRFHPRQPEIIAA 107 Query: 120 VTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYL 177 VTGT+GK+SVASF++QI + IG T + D LTTP P+ L + L L Sbjct: 108 VTGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDEL 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +GVTH ++EASSHGLDQ RLDG++L FTNLGRDH+DYH + Y AK+RLF +L Sbjct: 168 AGEGVTHCAMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDL 227 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L PA+IYADD +S V+ A G V +VG +G+FI +K++ Q + +G Sbjct: 228 LKPGQPAVIYADDEFSGRVIDHAEFHGLDVKTVGREGEFIAVKRIEQHRTSQVAEVVCDG 287 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + + PL GEFQ+ NALVAAG+ IA G+++ L L GR E +G + G Sbjct: 288 ETYRVELPLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAA 347 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 YVDYAH +LE +L +R T+G++++VFGCGGDRD GKR IMG+IA +AD IVTD Sbjct: 348 CYVDYAHKPEALENVLAALRPYTTGQLVLVFGCGGDRDPGKRAIMGEIAARMADRVIVTD 407 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSE+P IRA I+ P E G+R EAI A+E L D L+VAGKGHE IV + Sbjct: 408 DNPRSENPGSIRAAIMEAAPDATEIGDRYEAIINAVEGLGSGDTLIVAGKGHEEGQIVGD 467 Query: 478 GEKKMSVDCDIIREILGL 495 S D ++RE L L Sbjct: 468 TVLPFS-DHAVLREALAL 484 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 38/383 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P E I +S D+R +Q G + AI G+ DGH F+ A A GA VV+ + Sbjct: 557 LPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHAAGATVSVVA-----K 611 Query: 81 DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 D+ + + +LVVD+ L + ++A+TG+ GK++ + R Sbjct: 612 DWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTTKEML-----R 666 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197 +GL++ + ++SF +N P + A S + G+ H L Q Sbjct: 667 TGLAACG-HVHAAVASF--NNHWGVPLTLARMPADSDFAVIEIGMNH---PGEITPLVQM 720 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + +I N+ H+ + +AK +F+ L+P + A++ ADD ++ Sbjct: 721 TRPHVAII----NNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGT-AVLNADDERLPIML 775 Query: 258 KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 RA A VL + L+K+ + + ++ +V G+ PG NA Sbjct: 776 DRATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNA 835 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEM 371 LV + D A V L ++ V GR + VG +G + +D ++ +N M Sbjct: 836 LVVLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVG---QGAAVLIDESYNANPTSM 892 Query: 372 -----ILKNIRTITSGRIIVVFG 389 +L + GR I V G Sbjct: 893 AASLDLLGSREPAPGGRRIAVLG 915 >gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase-like protein [polymorphum gilvum SL003B-26A1] gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase, putative-like protein [Polymorphum gilvum SL003B-26A1] Length = 489 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/466 (43%), Positives = 289/466 (62%), Gaps = 3/466 (0%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +++DSR ++ G++F A+ G DG F+P+A+ QGA A V++ A + T+ Sbjct: 20 SVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVA-VLTDAQGAAALAGTMPD 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+LV + R+ L+L A+R YG+ P ++AVTGTSGK+SVA FV+QI + +G +S +G Sbjct: 79 SVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHAGHASASLG 138 Query: 149 PTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T++S + LTTP P+ L L+ L+ +G+TH ++EASSHGL+QHRLDG++L+AG Sbjct: 139 TIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEASSHGLEQHRLDGVRLVAG 198 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNLGRDH+DYH T++ Y AK+RLF +LLP ++ + + V+ A G + Sbjct: 199 AFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAVARERGLHI 258 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +VG +G + L + Q++T+ D+ PL G FQV NAL+AAGL I G Sbjct: 259 FTVGERGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAAGLAITAGE 318 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + VL LE L PGR E VG + G ++VDYAH ++LE L +R T GR+ VV Sbjct: 319 ATGAVLRALEDLEGAPGRLELVGRKANGALVFVDYAHKPDALENALAALRPFTCGRLFVV 378 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 G GGDRD GKRP+MG A AD+ IVTDDNPRSEDP IR ++ G P +E G+R Sbjct: 379 IGAGGDRDPGKRPLMGAAAARHADVVIVTDDNPRSEDPAAIRKAVLAGAPDALEIGDRGA 438 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AI A+ L DVL VAGKGHET IV + S D D +R L Sbjct: 439 AIAEAVARLEAGDVLCVAGKGHETGQIVGDTVLPFS-DHDAVRAAL 483 >gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 481 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 215/470 (45%), Positives = 290/470 (61%), Gaps = 16/470 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +++ S + G IF A+ G+K DG ++P A+ +GA AIV+ + T+ + Sbjct: 21 EVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRGASAIVIGKGKGV-----TVPA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ VDN R L+ A++ G+ P +AVTGTSGK+SVA F +QI G + +G Sbjct: 76 GVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVADFTRQIFTSLGRKAASVG 135 Query: 149 PTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI D LTTP P+ L L+ L+ +GVTH++ EASSHGLDQ+RLDG++L Sbjct: 136 ---TIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEASSHGLDQNRLDGVEL 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A +FTNLGRDH+DYH T++AY AK+RLF ELL PA+I D A S +V A G Sbjct: 193 SAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDGARSADVAAAAKARG 252 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 RV++VG G + + +Q++ I +G+ FD PL G +QV NALVAAGL IA Sbjct: 253 LRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRSFDVRLPLVGAYQVENALVAAGLAIA 312 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G + VL LE L VPGR E +G + GG VDYAH +L L R +GR+ Sbjct: 313 TGEKADAVLAALESLKGVPGRLEIIGERN-GGLAVVDYAHKPEALAAALDACRPFVTGRL 371 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 I VFGCGGDRD+GKRPIMG+I+++ AD+ IVTDDNPRSED IRAEI+ G G E GN Sbjct: 372 ISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDNPRSEDAASIRAEILAGAAGAREIGN 431 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493 R EAI TA+ M+ DV ++AGKGHET IV G++ + D D +R+ L Sbjct: 432 RAEAIATAVSMMQPGDVALIAGKGHETGQIV--GDRILPFSDHDEVRKAL 479 >gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 216/498 (43%), Positives = 296/498 (59%), Gaps = 22/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L L FP+ + I P + R+I ++ DSR + +F A+ G K DG + Sbjct: 1 MRLDAL----FPDAL----IEPPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILA 119 P+A+ +GA A+V SA++ T LV V + R L++ ++R Y + PE ++A Sbjct: 53 PEAVRRGALAVVTEQ-------SASVPFETAALVKVADVRSALAIASARFYARQPETVVA 105 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGTSGK+SVA+F +QI G + +G ++ A LTTP PI L + L L+ Sbjct: 106 VTGTSGKTSVAAFARQIWASLGFKAASVGTLGVVAPDGASYGGLTTPDPISLHRTLDELA 165 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 GVTH+++EASSHGLDQHRLD ++L A FTNL RDH+DYH T +AYF AK+ LF +L Sbjct: 166 GAGVTHLALEASSHGLDQHRLDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVL 225 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + ++ AD + EV+ A G +V S+G+ G+ +HL + + ++ GK Sbjct: 226 PADGTVVVDADSSAGHEVIDVAKARGLKVFSLGFAGETLHLLEARPEAAATLLRLTFAGK 285 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D+ PL G FQ NAL+AAGLCI+ G V LE+L PGR E VG RG I Sbjct: 286 DWALRLPLVGSFQAANALMAAGLCISTGAAPDAVFAALERLEGAPGRLEKVG-ERRGASI 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +VDYAH ++LE L+ +R T R+IV+FGCGGDRD GKRP+MG+IA LAD IVTDD Sbjct: 345 FVDYAHKPDALEKALQALRPFTQKRLIVIFGCGGDRDAGKRPLMGEIAARLADHVIVTDD 404 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP+ IR I+ G P E G+R AI++ I ML D+L++AGKGHET I+ Sbjct: 405 NPRSEDPDLIRKAILQGAGSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKGHETGQIL 464 Query: 476 TNGEKKMSVDCDIIREIL 493 + S D D R L Sbjct: 465 ADRTLPFS-DRDCARAAL 481 >gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Roseibium sp. TrichSKD4] Length = 489 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/457 (44%), Positives = 280/457 (61%), Gaps = 2/457 (0%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 I P I +++DSR I+ G++F A+ G DG F +A+ GA A++ + Sbjct: 11 IVPAAGSTVSITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAA- 69 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + + + + DN R+ +L A+R +G PE ++AVTGTSGK+SVA FV+QI Q Sbjct: 70 DRLAQELSKDVVLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQA 129 Query: 140 SGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G +S +G T+++ Q LTTP P+ L L+ LS +G+TH ++EASSHGLDQHR Sbjct: 130 AGHASASLGTIGTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHR 189 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LDG++L+A FTNLGRDH+DYH T + Y AK+RLF +LL K +P ++ + Y+ V+ Sbjct: 190 LDGVRLVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIA 249 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A G V SVG G+ I L K+ Q++ + G+ L PL G FQV NALVA Sbjct: 250 VAQERGLPVFSVGEAGENIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVA 309 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AGLCI G+ + L +L PGR EF G + GG +Y+DYAH ++LE L +R Sbjct: 310 AGLCICAGVAPDEAIAALAELKGAPGRLEFAGRSQTGGTVYIDYAHKPDALENALAALRP 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 SG++ VV G GGDRD GKR IMG+++ AD+ IVTDDNPR+EDP IR ++ G PG Sbjct: 370 FASGQLSVVIGAGGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSGAPG 429 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E G+R EAIR + L D+L VAGKGHET I+ Sbjct: 430 ALEIGDRREAIREGVRRLKSGDILCVAGKGHETGQII 466 >gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia alexandrii DFL-11] Length = 480 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 204/485 (42%), Positives = 284/485 (58%), Gaps = 13/485 (2%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D P+ + LSI +++DSR +Q G++F A G+ DG F+P+A+ A Sbjct: 2 DLPDTADGLSI----------EGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAV 51 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A++ ++ + + A + +L D R S A+R YG+ P+ I+AVTGT+GK+SV Sbjct: 52 AVLCAT-NAAEAVRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSV 110 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A FV+QI Q +G + +G I + LTTP P+ L K L+ L+++G+ + ++E Sbjct: 111 AHFVRQIFQAAGHPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALE 170 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGLDQ+RLDG++L A +FTNLGRDH+DYH T + Y AK+RLF ELLP ++ Sbjct: 171 ASSHGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDP 230 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + Y+ V+ A G V +VG GK + L + Q +T+ ++ PL G Sbjct: 231 GEKYTDRVLAIAEERGLPVFTVGETGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIG 290 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQV NAL+AAGL I GID+ L LE L PGR E GT GG ++VDYAH ++ Sbjct: 291 RFQVSNALIAAGLAITAGIDAGAALRALENLKGAPGRLELAGTTPAGGMVFVDYAHKPDA 350 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ L ++ G + VV G GGDRD GKRP+MG+ A AD+ IVTDDNPRSEDP I Sbjct: 351 LDKALAALKPFAEGSLSVVVGAGGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATI 410 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 R ++ G PG +E G+R EAI I L D+L VAGKGHET IV + S D D Sbjct: 411 RKAVLAGAPGGLEIGDRAEAIAEGIRRLKSGDILCVAGKGHETGQIVGDTVIPFS-DHDS 469 Query: 489 IREIL 493 +R+ L Sbjct: 470 VRQAL 474 >gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas sp. BAL3] Length = 485 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 216/474 (45%), Positives = 282/474 (59%), Gaps = 18/474 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+SDSR + G +FVA+ G DG FIPQA+AQGA A++ + T S Sbjct: 20 ITGVTSDSRKVAPGALFVALPGTAADGRAFIPQALAQGAAAVLAPTD--------TPDSA 71 Query: 90 TPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+LV + R+ ++ A YG P +AVTGT+GK+SVA+F +QI G S +G Sbjct: 72 APVLVTSGDVRRAYAIAARGFYGAQPRTCVAVTGTNGKTSVAAFCRQIWAGLGHKSASMG 131 Query: 149 PTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + LT+P A+ ++ L+++ VTHV+VEASSHG+DQ RLDG+ Sbjct: 132 TLGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAKDVTHVAVEASSHGIDQRRLDGV 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAH 261 L A +FTNL +DH+DYH T Y AKMRLFE LLP+ A++ AD DAYS + Sbjct: 192 ALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPRGRTAVLNADSDAYSA-FAAASI 250 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 AG V+ VG +G+ + L A Q++T+ V G D L PL G FQ NALVAAGL Sbjct: 251 MAGLGVMGVGERGRDLALIGRQATPEGQRLTLDVRGDVRDILLPLAGAFQASNALVAAGL 310 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 CIA G V+ LE L GR + + + G +YVDYAHT + LE +L +R + Sbjct: 311 CIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRGEVYVDYAHTPDGLETVLTALRPHAT 370 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR+IVVFG GGDRD+GKRP+MG+IA LAD+AIVTDDNPRSEDP IRA++ G P +E Sbjct: 371 GRLIVVFGAGGDRDRGKRPLMGEIAGRLADVAIVTDDNPRSEDPASIRAQVRAGCPEALE 430 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 G+R AI AIEM+ DV+V+AGKGHE IV G D + E L L Sbjct: 431 IGDRRAAIEAAIEMMRDGDVVVIAGKGHEQGQIV-GGTTHPFDDATVASEALSL 483 >gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris BL2] Length = 490 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 206/468 (44%), Positives = 279/468 (59%), Gaps = 12/468 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR + +F A+ G K DG F PQA +GA AIV + SA Sbjct: 21 VAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKGAVAIVA------EGKSAASIEG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V + R L+ A+R + + PE I+A+TGTSGK+SVA+FV+Q+ +G ++ +G Sbjct: 75 APVIAVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAAFVRQLFAANGFAAASLGT 134 Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++ LTTP PI L + L L++ GVTH+++EASSHGL Q RLDG++L AG+ Sbjct: 135 LGVVAPNGSVYGSLTTPDPINLHETLDGLAASGVTHLALEASSHGLTQRRLDGVRLKAGA 194 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T Y AK+ LF+ LL PA+I AD + EV+ G ++ Sbjct: 195 FTNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADSDVATEVIAACKARGLKIF 254 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +VG +G+ + L + + ++ EG+ + PL G FQ NALVAAGL I G+ Sbjct: 255 TVGSKGESLKLLRATPKAAATGIEVAHEGRIYKLELPLAGAFQTSNALVAAGLAIVCGVS 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L LE + PGR E VG + G IYVDYAH ++LE +L +R +GR++VVF Sbjct: 315 AERALTALEHIEGAPGRLEKVGERN-GAPIYVDYAHKPDALEKVLCALRPAVAGRLLVVF 373 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNR 445 GCGGDRD GKRPIMG+IA LAD+ IVTDDNPRSEDP IRA I+ G G E G+R Sbjct: 374 GCGGDRDAGKRPIMGEIAAKLADLVIVTDDNPRSEDPASIRAAILKGAAGAATVREIGDR 433 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AIR + LN D L++AGKGHET I+ + S D D R L Sbjct: 434 ASAIRAGVAALNSGDCLLIAGKGHETGQIIGDVTLPFS-DADCARAAL 480 >gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 483 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/483 (44%), Positives = 293/483 (60%), Gaps = 32/483 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L DL+ +D ++ P+ I V++DSR + +G +FVA+ G DG FI Sbjct: 4 IRLSDLLRRD-------VAADPV------ITGVTADSRKVTSGSLFVALPGTAADGRAFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILA 119 PQA++QGA A++ QD T P+LV + R+ +L A YG P +A Sbjct: 51 PQALSQGAAAVLAP-----QD---TPDGAAPLLVRSGDVRRAYALAARGFYGAQPATCVA 102 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP------TSTISSFAQDNRLTTPSPIYLAKA 173 VTGT+GK+SVA+F +QI G+ + +G + +I+ LT+P A+ Sbjct: 103 VTGTNGKTSVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARL 162 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ L+ GVTH+++EASSHG+DQ RLDG+ L A +FTNL +DH+DYH AY AK+RL Sbjct: 163 LATLAEGGVTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRL 222 Query: 234 FEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 FE LLP+ A++ AD DAY+ + G V+ VG +G+ + L + A+ Q++ Sbjct: 223 FESLLPRGRTAVLNADSDAYNAFAAASIMS-GLGVMGVGERGRDLSLIERRAVPEGQRLI 281 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + V G D L PL G FQ NALVAAGLCIA G D+A VL LEK+ GR + V Sbjct: 282 LDVRGDRHDVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGRLQRVSGG 341 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G YVDYAHT + LE +LK +R +GR+IVVFG GGDRD+GKRP+MG IA LAD+ Sbjct: 342 R--GEAYVDYAHTPDGLETVLKALRPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADV 399 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 AIVTDDNPRSEDP IRA++ G P E G+R AIR A+ M+ DV+VVAGKGHE Sbjct: 400 AIVTDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKGHEQG 459 Query: 473 HIV 475 IV Sbjct: 460 QIV 462 >gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2] Length = 480 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/466 (44%), Positives = 286/466 (61%), Gaps = 11/466 (2%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL + + F Q E + ++ DSR ++ G +F A+ G+K DG FI AI GA A+V Sbjct: 5 ELFSGDATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAGAVAVV 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 A+S+ + P++V N R+ L+L A+ Y + P+ I AVTGTSGK+SVA+F Sbjct: 65 ADHAHSV---------SVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAAF 115 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +Q+ G + +G +S LTTP P+ L +AL L+ GVTH+++EASS Sbjct: 116 TRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEASS 175 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQHRLDG+++ A +FTNL RDH+DYH T + Y AK+RLF +L P+ +PA+I AD Sbjct: 176 HGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADHE 235 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +S V+ A V+++G +G+ I L Q++TI G+ PL GEFQ Sbjct: 236 HSAAVIAAARARKLDVITIGRKGEGIRLVDATIDGFGQKMTIQHRGQTHRLRLPLVGEFQ 295 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + NALVAAGL IA G D+ LE+L GR E +G + RG ++VDYAH ++L Sbjct: 296 IENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIG-DCRGAPVFVDYAHKPDALMK 354 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R GR++VVFG GGDRD GKRP+MG IA+ AD IVTDDNPRSE P IRAE Sbjct: 355 ALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGAIAMRYADAVIVTDDNPRSERPATIRAE 414 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I+ G E G+R EAIR+A+ L DVL++AGKGHET IV + Sbjct: 415 ILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKGHETGQIVGD 460 >gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Hyphomonas neptunium ATCC 15444] Length = 478 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 213/479 (44%), Positives = 296/479 (61%), Gaps = 27/479 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL FP N E +I ++SDSR +Q GW+F A+ G+ DG F+ Sbjct: 1 MKLSDL----FPLAENG---------ETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFV 47 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+AQGA AI+ + P ++ D R+ L+L A R YG+ PE ++AV Sbjct: 48 PQAVAQGAAAILSDGGIGA--------VSVPHVMADEPRRALALAAKRFYGEQPEFVVAV 99 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179 TGT+GKSS F +QI R+G+ + +G I + D TTP P+ +++ + L+ Sbjct: 100 TGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALAR 159 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QGVTH ++EASSHGL+QHRLDG+ L A +F NL +DH+DYH T +AY +AK+RLF +L P Sbjct: 160 QGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAP 219 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVE 296 + PAI+ AD + + V + A AG +V+S G++G+ + + ++ Q + + VE Sbjct: 220 RGIPAIVNADSDHREAVEETARKAGLQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVE 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K + PL GEFQ NAL AA LC+++G++ V + L L V GR EFVG G Sbjct: 280 QKPIEL--PLIGEFQTLNALAAAALCLSLGMEFPAVADGLANLKPVKGRLEFVGKTETGA 337 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++VDYAHT + L+++L+ +R T+GR+ V+FGCGGDRD KRPIMG+IA AD IVT Sbjct: 338 AVFVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGGDRDAKKRPIMGEIASRQADDVIVT 397 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DDNPRSEDP KIRA ++ G G E G+R EAI + L K D LV+AGKGHET I+ Sbjct: 398 DDNPRSEDPAKIRASVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKGHETGQII 456 >gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase protein [Pseudovibrio sp. JE062] Length = 1257 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 286/447 (63%), Gaps = 2/447 (0%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++DSR ++ G++F A+ G K DG FI QA+ GA AI++ + D + Sbjct: 27 ISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAGAAAILIDADRIDDDIRKKAK-Q 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ ++ R+ L+L A+ G+ PE ++AVTGT+GK+SVA FV+QI + +GL S +G Sbjct: 86 VPLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTSVAVFVRQIFEYAGLVSASLGT 145 Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T++S Q LTTP P+ L + L L+ G+TH ++EASSHGLDQHRLDG++++A Sbjct: 146 IGTVTSTGQSYGGLTTPDPVSLHEDLKRLAEDGITHAAMEASSHGLDQHRLDGVRIVAAG 205 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNLGRDH+DYH T + Y AK+RLF +LLP + +I + ++ V++ A G + Sbjct: 206 FTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVIDPEAQFADRVLEVAKERGLKTF 265 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G+ G+ + ++ V Q + + F PL G+FQV NAL+AAGL IA G+ Sbjct: 266 TTGFFGEDLKVRSVQPEGFSQVLELETAEGVFSVALPLAGDFQVSNALIAAGLAIAAGVP 325 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 LE L L PGR E VGT G ++VDYAH +LE +L +R GR+I VF Sbjct: 326 LQTALEALTVLRGAPGRIEHVGTRENGALVFVDYAHKPEALENVLAALRPFAPGRLISVF 385 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GCGGDRD GKRP+MG+I+ LAD++IVTDDNPR+E+P+ IR EI+ P +E G+R A Sbjct: 386 GCGGDRDAGKRPLMGEISARLADVSIVTDDNPRTENPDSIREEIVAACPAALEIGDRALA 445 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR A++ML + DVL VAGKGHET IV Sbjct: 446 IRQAVKMLQEGDVLCVAGKGHETGQIV 472 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 154/385 (40%), Gaps = 43/385 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR IQ G F AI G DGH F A+ GA VVS ++ + Sbjct: 808 ITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVEAGASVAVVS-----REKLGELPEG 862 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + VD+ K L + I+AVTG+ GK+ ++ +SG++ Sbjct: 863 GRYVAVDDVLKALERLGVAARARSKARIIAVTGSVGKTGTKEALRLCLSKSGITH----- 917 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---- 205 + ++SF +N P+ LA+ + + G+ + + HR + L+ Sbjct: 918 -APVASF--NNHWGV--PLTLAR-MHADTEFGIFEIGM--------NHRGEITPLVKMVR 963 Query: 206 --AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T + H++ + + AK +F + P AI+ D+ + A A Sbjct: 964 PHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPG-GVAILNRDNRQYDLLRYLAAVA 1022 Query: 264 GCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + ++S G Q G KKV + + ++ G++ + PG V N+L Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKN 375 + +G + A L ++ GR + GG + VD ++ +N M ++ Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142 Query: 376 IRTITSGRIIVVFG----CGGDRDQ 396 + +GR I V G G D D+ Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDK 1167 >gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC 21756] Length = 486 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/455 (43%), Positives = 275/455 (60%), Gaps = 14/455 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR + AGW+F A+ G K DG F A+A+GA AI+ L+ Sbjct: 19 IAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEG-GLEGL------G 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ ++ R+ +L ++ +GK P +AVTGT+GK+SVA F +QI + G + +G Sbjct: 72 VPVVRSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMGT 131 Query: 150 TSTISSFA-QDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + S A Q ++ LTTP +A+ ++ L+ GVTH+++EASSHG+DQ R+DG+ Sbjct: 132 LGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDGV 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 KL A +FTN +DH+DYH + +AY AK+RLF+ L P + A++ AD A Sbjct: 192 KLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAVT 251 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +G V SVG G+ + L Q + + +G+ +D PL G FQ N LVAAGLC Sbjct: 252 SGQSVFSVGEDGQGLRLISRTPTPAGQDLVVEAQGRTYDIRLPLAGAFQASNVLVAAGLC 311 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G D VL+ LE L GR + VG GG YVDYAHT + L+ +L+ +R T G Sbjct: 312 VAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGGEAYVDYAHTPDGLQTVLEALRPHTRG 371 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++I VFG GGDRD+GKRP+MG I LADIAIVTDDNPRSEDP IRA I+ PG E Sbjct: 372 KLIAVFGAGGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRAAILEAAPGAREI 431 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+R AIR A+++L + DVLVVAGKGHE IV Sbjct: 432 GDRRAAIRAAVDLLAEGDVLVVAGKGHEQGQIVAG 466 >gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phenylobacterium zucineum HLK1] Length = 483 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/455 (46%), Positives = 275/455 (60%), Gaps = 18/455 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V++DSR ++AG +F A+ G K DG F AI GA A++ L Sbjct: 17 EITGVTADSRKVRAGTLFAALPGTKVDGASFAAAAIQAGAAAVIADRDLGLP-------- 68 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +V + R+ +L A+ +G+ P+ +AVTGT+GK+SVA+F +Q+ R+G +S +G Sbjct: 69 -VPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSASMG 127 Query: 149 --------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 P T LTTP +A+ L+ ++ GV+H ++EASSHG+DQ RLD Sbjct: 128 TLGVTVSRPDGTHEQLTPPG-LTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRLD 186 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+KL A F NL +DH+DYH T +AY AK+RLFE LLP+ A++ AD A Sbjct: 187 GVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAAAA 246 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 AG V+ VG G + L K + Q + I EG+ D PL G FQ NALVAAG Sbjct: 247 VIAGQWVMPVGETGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVAAG 306 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 LC A G+ V LE L PGR + VG +RGG YVDYAHT + LE +LK +R Sbjct: 307 LCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYVDYAHTPDGLETVLKALRPHV 366 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR+IVVFG GGDRD+GKRP+MGK+A +LAD+AIVTDDNPRSE P IRAE++ G PG Sbjct: 367 RGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAEVLAGCPGAA 426 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R EAIR A+ ML D+LVVAGKGHE IV Sbjct: 427 EIGDRREAIREAVAMLRDGDILVVAGKGHEQGQIV 461 >gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans ORS 571] Length = 489 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 201/449 (44%), Positives = 278/449 (61%), Gaps = 12/449 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SDSR + G +FVA+ G K DG FIP A+A+GA A+++ + D + Sbjct: 32 IAAITSDSRKVGPGTLFVAVPGTKADGARFIPDALAKGAAAVLMEPTGAPPDM------D 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + R+ L+L A+RL+ + P+ I+AVTGT+GK+SVA FV+QI G+ + +G Sbjct: 86 VPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTSVAEFVRQIWAHLGIPAAYMGT 145 Query: 150 TSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I+ LT+P P+ L L L+ G+TH+++EASSHGLDQ RL+G++L AG Sbjct: 146 LGLIAPGESSYGGLTSPDPVDLHATLDRLAGAGITHMALEASSHGLDQRRLEGVRLAAGG 205 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNLGRDH+DYH T +AYF+AK+RLF EL+P +PAI D Y + A G Sbjct: 206 FTNLGRDHLDYHPTVEAYFHAKLRLFTELMPDGAPAIAALDAPYGATTLAFARTRGLPTF 265 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 ++G G + + +V A Q++ + + L PL G FQ NAL+AA L A G+ Sbjct: 266 AIGATGD-LKVTEVVAEGTSQRIRFA---DRPEILLPLVGRFQADNALLAASLVAAGGVP 321 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 L L L VPGR E +G + ++VDYAH +LE +L +R T+GR+I +F Sbjct: 322 LDDALSALPHLKGVPGRLERIGHDP-ARPVFVDYAHKPEALETVLDTLRAATAGRLIALF 380 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GCGGDRD+GKRP+MG IA AD+ IVTDDNPRSEDP IRAEI+ PG +E G R EA Sbjct: 381 GCGGDRDRGKRPLMGAIAAAKADVVIVTDDNPRSEDPSAIRAEILAAAPGALEIGAREEA 440 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IR + M+ DVL+VAGKGHET I+ + Sbjct: 441 IRAGVAMMGAGDVLLVAGKGHETGQIIGD 469 >gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis excentricus CB 48] Length = 487 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 212/487 (43%), Positives = 291/487 (59%), Gaps = 34/487 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L D++ +D L + P+ + V++DSR + G +F A+ G DG FI Sbjct: 4 LRLSDILRRD-------LDVDPV------VTGVTADSRKVGPGTLFCALPGTARDGREFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA++QGA A++ +D T+ + + IL + R+ +L A YG P+ +A+ Sbjct: 51 PQALSQGAAAVLAP-----ED---TLATASNILTTYDVRRAYALAAKAFYGAQPKTCVAI 102 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR------LTTPSPIYLAKAL 174 TGT+GK+SVA+F +Q+ G S +G ++ LTTP +A+ L Sbjct: 103 TGTNGKTSVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHL 162 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + L+ GVTH+++EASSHG+DQ RLDG+ L A FTNL +DH+DYH T +AY AK+RLF Sbjct: 163 ASLARDGVTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLF 222 Query: 235 EELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 E+LLP+ A++ AD DAY+ A AG +LSVG +G+ + L + Q + + Sbjct: 223 EQLLPRGRVAVLNADSDAYNA-FAASAITAGASLLSVGERGQHLTLTHRDLTVDGQILYL 281 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G+ F+ L G FQ NALVAAGLC+A G + VLE L L GR E VG+ Sbjct: 282 EHQGRKFEVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTG 341 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G IYVDYAHT + LE +LK +R T GR++ VFGCGGDRD+GKRP MG IA LAD Sbjct: 342 NGAEIYVDYAHTPDGLETVLKALRPHTQGRLVCVFGCGGDRDRGKRPQMGAIAERLADRV 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 IVTDDNPRSE+P IRAEI+ G+ G +E G+R +AI A+ L DVLVVAGKG Sbjct: 402 IVTDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVAGKG 461 Query: 469 HETVHIV 475 HE IV Sbjct: 462 HEQGQIV 468 >gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Asticcacaulis biprosthecum C19] Length = 487 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/466 (45%), Positives = 283/466 (60%), Gaps = 19/466 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V++DSR + G +F A+ G DG FIPQA+A+GA A++ D +A + S Sbjct: 20 VTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAAAVLAP------DDTAALESP 73 Query: 90 TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +LV V + R+ +L A YG P+ +AVTGT+GK+SVA+F +QI G S +G Sbjct: 74 DSLLVKVSDVRRAYALAAKAFYGSQPKICVAVTGTNGKTSVATFCRQIFSTLGKKSASMG 133 Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + S LTTP +A+ LS L++ GVTH+++EASSHG+DQ RLDG Sbjct: 134 TLGVVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLALEASSHGIDQRRLDG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRA 260 + L A FTNL +DH+DYH T +AY AK+RLFE LLP+ A++ AD DAY+ Sbjct: 194 VSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVLNADSDAYN-SFAAMC 252 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +G V+SVG +G+ + + + Q + I +G+ ++ PL G FQ NALVAAG Sbjct: 253 VLSGTSVMSVGERGRGLAMVGRDLTVDGQILFIEHQGRKYETKLPLAGLFQASNALVAAG 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 LCIA G D V+ L L GR E VG +YVDYAHT + LE +LK +R T Sbjct: 313 LCIAAGEDPGAVIHALSLLKGARGRLERVGAKRNAAEVYVDYAHTPDGLETVLKALRPHT 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439 G+++VVFGCGGDRD+GKRP MG IA LAD AIVTDDNPRSEDP IRAE++ G+ Sbjct: 373 QGKLVVVFGCGGDRDKGKRPQMGAIAARLADRAIVTDDNPRSEDPATIRAEVLAGMSSET 432 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +E G+R +AI A+ L DVLVVAGKGHE I+ G+K + D Sbjct: 433 VEIGDRKKAILEAVSGLKTGDVLVVAGKGHEQGQII--GDKVLPFD 476 >gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stappia aggregata IAM 12614] Length = 489 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/462 (43%), Positives = 271/462 (58%), Gaps = 10/462 (2%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P RKI +++DSR +Q G++F A G DG F P A A + + Sbjct: 12 LPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAA-----GAIAILCAE 66 Query: 81 DFSATIRSNTP--ILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 D +A +R+ P + VV R+ + A+R YG P+ I+AVTGT+GK+SVA F +QI Sbjct: 67 DAAAEVRALVPETVAVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHFARQI 126 Query: 137 CQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 Q +G + +G I + LTTP P+ L K L+ L +GV H ++EASSHGLD Sbjct: 127 FQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASSHGLD 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+RLDG++L A +FTNLGRDH+DYH T + Y NAK+RLF ELLP ++ + Y+ Sbjct: 187 QYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEKYADR 246 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 VM A G V +VG G+ + L + + Q++TI ++ PL G FQV NA Sbjct: 247 VMAVAQERGLPVFTVGETGRNLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQVSNA 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+AAGL I+ GID+ L LE L PGR E G GG I+VDYAH ++L+ L Sbjct: 307 LIAAGLAISAGIDTGTALRALENLKGAPGRLELAGRTPAGGLIFVDYAHKPDALDNALVA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ G++ VV G GGDRD GKR +MG++A AD+ IVTDDNPRSEDP IR ++ G Sbjct: 367 LKPFARGKLSVVIGAGGDRDPGKRELMGEVAARRADLVIVTDDNPRSEDPAAIRKAVMSG 426 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PG IE G+R EAI + L D+L VAGKGHET IV + Sbjct: 427 APGAIEIGDRYEAIAEGVRRLKDGDILCVAGKGHETGQIVGD 468 >gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM 506] Length = 495 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/469 (45%), Positives = 286/469 (60%), Gaps = 13/469 (2%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL+ + + + + + E + DSR +AG +F A+ G+K DG F A+A+G A V Sbjct: 19 ELVGEDADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVLA-V 77 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ A F ++ + V N R+ ++L A+R + K PE I AVTGTSGK+SVA+F Sbjct: 78 VAEAERPPWFDPSVS----YVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAAF 133 Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +QI R G +S +G ++ S A LTTP PI L + L L+ +GVTH+ +EASS Sbjct: 134 ARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEASS 193 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ+RLDG++L AG FTNL RDH+DYH + +AY +AKMRLF ELLP+ A ++ D Sbjct: 194 HGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDST 253 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPG 308 V + A + VL +G G I L A H++ Q + + +G+ F PL G Sbjct: 254 EGSHVAQVAADHELNVLGIGVAGAGISL---LARHDEGLGQLLEVEADGRRFTLRLPLVG 310 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ NALVAAGL + G + L LE L VPGR E VGT G ++VDYAH ++ Sbjct: 311 AFQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKDGAG-VFVDYAHKPDA 369 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L L +R +GR+IVVFGCGGDRD+GKRPIMG IA + AD+ IVTDDNPRSEDP I Sbjct: 370 LANALDALRPYATGRLIVVFGCGGDRDRGKRPIMGAIAAEKADVVIVTDDNPRSEDPAFI 429 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RA I+ P E G+R EAI AI M DV+++AGKGHET IV + Sbjct: 430 RAAILEAAPEAQEIGDRAEAIAAAIGMAKSGDVVLIAGKGHETGQIVGD 478 >gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum lavamentivorans DS-1] Length = 482 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 205/461 (44%), Positives = 279/461 (60%), Gaps = 11/461 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G++F A+ G K DG FI QAI +GA A++V A + +N P+ Sbjct: 22 LTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLVP-------LDAAVAANVPV 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + N R+ L+L A+ +G P + AVTGT+GK+S+A+F+++I G + +G Sbjct: 75 IADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALGEEAASLGTLGV 134 Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 S+ + + TTP P+ L L+ L+ +GVTH+++EASSHGL Q+RLDG+KL A FTN Sbjct: 135 TSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLDGVKLRAAGFTN 194 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + RDH+DYH + Y AK+RLF E++ A++ AD A E G R++SVG Sbjct: 195 ITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVCWARGHRIISVG 254 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 +GK I L Q + + EGK++ PL G FQ NALVAAGL I G + Sbjct: 255 RKGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAAGLAIGCGGAAEK 314 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 V LEKL GR E G +Y+DYAHT ++LE L+ IR T+GR+ +VFGCG Sbjct: 315 VFAALEKLTGAKGRMEEAAHLPNGASVYIDYAHTPDALENALEAIRPHTAGRLSIVFGCG 374 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 GDRD GKRP+MG A LADI VTDDNPRSE + IRA ++ G PG IE G+R AI T Sbjct: 375 GDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIRAAVLKGCPGAIEIGDRAAAIET 434 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491 A+ L DVLVVAGKGHET IV G+K + D + IRE Sbjct: 435 AMRALQPGDVLVVAGKGHETGQIV--GDKVLPFSDHEAIRE 473 >gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oligotropha carboxidovorans OM5] Length = 480 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 211/478 (44%), Positives = 293/478 (61%), Gaps = 19/478 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL L + +I P Q E + V+ DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRDL-------LRGEAAIDP-QAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ GA A+V ++ ++ P++V D+ R+ L+L A+ +Y + P I AV Sbjct: 53 EAAVKAGAVAVVTGHPHT---------ASVPVVVADDPRRALALAAAVVYPRQPRTIAAV 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +Q+ G ++ +G +S LTTP P+ L +A+ L+ Sbjct: 104 TGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAG 163 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y K+RLF +L P Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAP 223 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + +PA+I AD +S V+ A V++VG QG+ I L + Q++T+ G++ Sbjct: 224 EGAPAVIAADHEHSATVIAAARTHKLNVMTVGRQGEGIRLVEAAIDGFGQRMTVEHRGQN 283 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL GEFQ+ NALVAAGL I+ G D+A LE L GR E VG + G ++ Sbjct: 284 WRLRLPLVGEFQIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVG-DRFGAPVF 342 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++L L+ +R GR++VVFG GGDRD GKRP+MG+IA AD IVTDDN Sbjct: 343 VDYAHKPDALVKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGEIAARHADTVIVTDDN 402 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSEDP IRA I+ PG G+R EAIRTA+ L DVL++AGKGHE IV + Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKGHEIGQIVGD 460 >gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 478 Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 201/447 (44%), Positives = 267/447 (59%), Gaps = 6/447 (1%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR ++ G++F A+ G K DG FIP AIA GA A++V +++ + Sbjct: 12 ITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVE-----VPPQ 66 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ N R+ +L AS +G P + AVTGT+GK+S A F +QI R G S IG Sbjct: 67 VALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGT 126 Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I+ + LTTP P L L+ L+ G+TH +EASSHGLDQHRLDG+KL+A + Sbjct: 127 LGIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAA 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH + QAY AK+RLF E+LP+ + A+I AD + ++ G VL Sbjct: 187 FTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVL 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + L + Q++ + + G+ PL G FQ NAL A GL +A G D Sbjct: 247 GYGRAARDLRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 LE L L V GR + V + G +YVDYAHT ++LE +LK +R S R++VVF Sbjct: 307 PVTALEALGSLEGVHGRLQKVAARAHGAPVYVDYAHTPDALETVLKALRPHASRRLVVVF 366 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GCGGDRD GKRP+MG I LAD IVTDDNPRSEDP IRA + P IE G+R +A Sbjct: 367 GCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIGDRRDA 426 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR A+ L K DVLV+AGKGHE IV Sbjct: 427 IRAAVSGLQKGDVLVIAGKGHEKGQIV 453 >gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. NAS-14.1] Length = 493 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 185/442 (41%), Positives = 263/442 (59%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR +Q G +F A+ G+K G FI A+ GA A++ + + A ++ Sbjct: 23 VTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTDAEGATLAADALAQAE 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V D R+ LS A+ YG P+ ++AVTGT+GK+SV++FV+QI GL++ +G Sbjct: 83 VALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWIEMGLAAVNLGT 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++ TTP PI L + L++ S+ G+TH ++EASSHGLDQ RLDG+ L A F Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH+T AYF+AK LF +LP++ A+I DD +++ A GC V++ Sbjct: 203 TNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVAIARARGCEVIT 262 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 VG G +HL Q + S GK + L G FQ N L+AAGL IA G D Sbjct: 263 VGRDGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLLAAGLVIACGADP 322 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A V + L L V GR + T GG ++VDYAHT +++ L+ +R GR++ + G Sbjct: 323 AHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQAMRPHVMGRLVAIVG 382 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRA ++ G P E G+R EAI Sbjct: 383 AGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVMEGAPEATEVGDRAEAI 442 Query: 450 RTAIEMLNKQDVLVVAGKGHET 471 I+ + D L++AGKGHET Sbjct: 443 LRGIDAIGTGDALLIAGKGHET 464 >gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium nodulans ORS 2060] Length = 488 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 210/481 (43%), Positives = 282/481 (58%), Gaps = 17/481 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + + FPE + P + +++DSR ++ G++FVA+ G DG F Sbjct: 1 MSMATTLGALFPEAAGPEAGIP-------VTGLTADSRRVRPGFVFVAVPGTTMDGRSFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A GA A+V + + L V + R+ L+L A+RL+ + PE I+AV Sbjct: 54 TAAAAAGAVAMVTEGPRP-----EALPAEVAYLAVPDARRALALAAARLFARQPETIVAV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGKSSVA FV+Q+ R G S +G ++ A LTTP P+ L + L L+ Sbjct: 109 TGTSGKSSVADFVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAG 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+T +++EASSHG++Q RLDG++L A +FTNLG DH+DYH T +AY AK+RLFE LLP Sbjct: 169 DGITDLAMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLP 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + AI+ AD + V G +++ G G+ + L V Q +TI EG+ Sbjct: 229 DAATAIVNADGPMADRVAASVRARGLPLVTTGLSGETLRLSAVETRGFAQALTIKAEGRA 288 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEKLHVVPGRFEFVGTNSRGG 356 + PL G FQV NALVAAGL +A V+ L L VPGR E V T++ G Sbjct: 289 YQVDLPLVGGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHN-GA 347 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH +L +L+ +R T+GR++ V GCGGDRD+ KRP+MG+IA+ AD IVT Sbjct: 348 LCVVDYAHKPEALAGVLQALRPFTTGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVT 407 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSEDP IRAEI+ PG E G+R EAIRTA+ L DVLVVAGKGHET I+ Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKGHETGQIIG 467 Query: 477 N 477 N Sbjct: 468 N 468 >gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus NA1000] gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter crescentus CB15] gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Caulobacter crescentus NA1000] Length = 486 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/455 (44%), Positives = 275/455 (60%), Gaps = 14/455 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR + GW+F A+ G K DG F A+A+GA AI+ L+ Sbjct: 19 IAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILAPEG-GLEGL------G 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ ++ R+ +L A+ +GK P +AVTGT+GK+SVA F +QI + G + +G Sbjct: 72 VPVVRSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMGT 131 Query: 150 TSTI-SSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + S Q ++ LTTP +A+ ++ L+ GVTH+++EASSHG+DQ R+DG+ Sbjct: 132 LGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDGV 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 KL A FTN +DH+DYH + +AY AK+RLF+ L P + A++ AD + A Sbjct: 192 KLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAVT 251 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +G V SVG +G+ + L Q + + EG PL G FQ N LVAAGLC Sbjct: 252 SGQSVFSVGEEGQGLRLLSRTPTPAGQDLVVEAEGVVHHLKLPLAGAFQASNVLVAAGLC 311 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 IA G DSA VL+ LE L GR + VG +GG YVDYAHT + L+ +L+ +R T+G Sbjct: 312 IAAGEDSAKVLKALETLEGAAGRLQRVGRGPKGGEAYVDYAHTPDGLQTVLEALRPHTAG 371 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++I VFG GGDRD+GKRP+MG I LADIAIVTDDNPRSEDP IRA I+ PG E Sbjct: 372 KLIAVFGAGGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRAAILEAAPGAREI 431 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+R AIR A+ ++++ DVLVVAGKGHE IV Sbjct: 432 GDRRAAIRAAVALMSEGDVLVVAGKGHEQGQIVAG 466 >gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi BJ001] Length = 487 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 214/452 (47%), Positives = 281/452 (62%), Gaps = 10/452 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A GA A+ + Sbjct: 20 RPVAGLTADSRRVVPGGVFVAVPGTAADGRLFAAAAARAGAVAVAGEGTRPTD-----LP 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T + V R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI R G S + Sbjct: 75 EATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASL 134 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +++ A+ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+ L A Sbjct: 135 GTVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLAMEASSHGIEQRRLDGVALTA 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH T + Y AK+RLF LLPK PAI+ AD AY++ V+ A AG Sbjct: 195 AAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAGHT 254 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--- 323 VL+ G G FI L + + Q +T++ +G+++ PL G FQV NALVAAGL + Sbjct: 255 VLTTGRSGDFIRLIESGTVGFSQSLTLAHDGREYRVRLPLVGGFQVENALVAAGLALSTQ 314 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A D A V LE L VPGR E +G + GG VDYAH +LE +L +R SG+ Sbjct: 315 AGAADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLTALRPFASGQ 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E G Sbjct: 374 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 433 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIR + L DVLVVAGKGHET IV Sbjct: 434 DRAEAIRAGVRGLRAGDVLVVAGKGHETGQIV 465 >gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC 49242] Length = 483 Score = 353 bits (906), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 200/454 (44%), Positives = 267/454 (58%), Gaps = 15/454 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR I+ G+ F AI G+ DG ++ A A+GA +V Sbjct: 20 EIAGLSADSRAIREGFAFFAIPGHAGDGLSYVDDARARGARVVVAQRQSEC--------- 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P++VVD+ R L+ A+R + + P I AVTGTSGK+SV + ++QI G + +G Sbjct: 71 SLPLVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKTSVVASLRQIWTAMGHEAASLG 130 Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + S A LTTP P+ L + L L+ +GVTH+++EASS G+DQ RLDG++L Sbjct: 131 TVGVVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLAMEASSLGIDQRRLDGVRLSVA 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN RDH+D+H+ + YF AKMRLF+ L A+I AD + V G V Sbjct: 191 GFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVIDADSDVAPRVAAVCEKRGLNV 250 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 VG +G+ I +++ A + + G D+ PL G FQ NALVAAGL IA G Sbjct: 251 FGVGAKGEAIAVREARAHALATSLKLRHAGVDYSVELPLAGAFQTSNALVAAGLAIAAGD 310 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D A V L +L PGR EF+G G ++VDYAH ++LE +L +R +T R+IVV Sbjct: 311 DPARVFSALNELKGAPGRLEFIGERD-GAPVFVDYAHKPDALEKVLATLRPLTKRRLIVV 369 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443 FGCGGDRD+GKRP+MG+IA AD+AIVTDDNPRSED IRA II G G IE Sbjct: 370 FGCGGDRDRGKRPLMGEIAARAADVAIVTDDNPRSEDANAIRAAIIEGARGGGAEIIEIA 429 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R EAI A+ L DVLVVAGKGHET IV + Sbjct: 430 DRGEAISKAVADLRAGDVLVVAGKGHETGQIVGD 463 >gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfitobacter sp. EE-36] Length = 493 Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 186/442 (42%), Positives = 263/442 (59%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR +Q G +F A+ G+K G FI A+ GA A++ + + A +++ Sbjct: 23 IAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTDAEGAKLAADALAQAD 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V D R+ LS A+ YG P+ ++AVTGT+GK+SV++FV+QI GL++ +G Sbjct: 83 VALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWIEMGLAAVNLGT 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++ TTP PI L + L+ S+ G+TH ++EASSHGLDQ RLDG+ L A F Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH+T AYF+AK LF +LP++ A+I DD +++ A GC V++ Sbjct: 203 TNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVAIARARGCEVIT 262 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 VG G +HL Q + S GK + L G FQ N L+AAGL IA G D Sbjct: 263 VGRDGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLLAAGLVIACGADP 322 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A V + L L V GR + T GG ++VDYAHT +++ L+ +R GR++ + G Sbjct: 323 AHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQAMRPHVMGRLVAIVG 382 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRA ++ G P E G+R EAI Sbjct: 383 AGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVMEGAPEATEVGDRAEAI 442 Query: 450 RTAIEMLNKQDVLVVAGKGHET 471 I+ + D L++AGKGHET Sbjct: 443 LRGIDAIGTGDALLIAGKGHET 464 >gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconobacter oxydans 621H] Length = 486 Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 197/472 (41%), Positives = 283/472 (59%), Gaps = 14/472 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR G +F A+ G K+DG FIPQAI+QGA A++V + D S Sbjct: 22 ILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQGAAAVIVDQETARPD------SA 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++V + + L+ AS L G P I A+TGT+GKSS A F++Q+ G + +G Sbjct: 76 VPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTADFLRQLWILQGNRAASLGT 135 Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 IS LTTP P+ L++ L+ L+ GV HV++EASSHGL+QHRLDG+ L A Sbjct: 136 LGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEASSHGLEQHRLDGVTLTAA 195 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAGC 265 F+NL RDH+DYH T +AY AK+RLF+E+LP A + AD D+ + ++ A Sbjct: 196 GFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNADMDSETFSALQDIAARRSL 255 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIA 324 ++ SVG G + L + + Q + +++ G++ + LPG FQ N ++AA +C Sbjct: 256 KLRSVGRNGTTLRLIEARPTPSGQILRLALHGEELPEISLSLPGRFQADNVMLAAAMCWQ 315 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 D+ V+ L +L V GR E G YVDYAHT ++L+ +L ++R T+GR+ Sbjct: 316 DDADTRQVVALLPRLTGVHGRCERAVALPNGAAAYVDYAHTPDALDCVLSSLRPHTTGRL 375 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 +VVFG GGDRD+GKRP+MG +A +AD+AIVTDDNPR+E+P IR+EI+ P +E + Sbjct: 376 VVVFGAGGDRDRGKRPLMGAVAARMADLAIVTDDNPRTEEPSSIRSEILAACPDALEIAD 435 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD-IIREILGL 495 R AI +E L D+LVVAGKGHE IV G + + D +IRE+ G+ Sbjct: 436 RRSAIAAGLEALQPGDILVVAGKGHEQGQIV--GTEILPFDDRLVIRELAGV 485 >gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetospirillum magneticum AMB-1] gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magneticum AMB-1] Length = 478 Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 205/453 (45%), Positives = 271/453 (59%), Gaps = 10/453 (2%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I +++DSR ++ G++F A+ G K DG FIP A+A GA A++ S D Sbjct: 8 RDVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAAGAVAVLAPEG-SRPDLPPE 66 Query: 86 IRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +LV D N R+ +L AS +G P + AVTGT+GK+S A F +QI R G ++ Sbjct: 67 V-----VLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAA 121 Query: 145 FQIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T I++ DN+ LTTP P L L+ L+ GVTH +EASSHGLDQHRLDG+ Sbjct: 122 AAIG-TLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGV 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L+A +FTNL RDH+DYH AY AK+RLF E+LP+ + A+I AD + ++ Sbjct: 181 RLMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAK 240 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G VL G + + L + Q++ + + G+ PL G FQ NAL A GL Sbjct: 241 RGITVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLA 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G D LE L L VPGR + V + + G IYVDYAHT ++LE +LK +R + Sbjct: 301 LACGADPVAALEALGHLDGVPGRLQQVASRANGAPIYVDYAHTPDALETVLKALRPHAAR 360 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 R++ VFGCGGDRD GKRP+MG I LAD IVTDDNPRSEDP IRA + P IE Sbjct: 361 RLVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEI 420 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R AIR A+ L K DVLV+AGKGHE IV Sbjct: 421 ADRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIV 453 >gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelagibaca bermudensis HTCC2601] gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. HTCC2601] Length = 494 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 189/464 (40%), Positives = 270/464 (58%), Gaps = 1/464 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + R+ ++ +S DSR + G +F A+ G K G FI A+AQGA A++ Sbjct: 8 LSDLGLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + +A S+ +++ R L+ + +G P ++AVTGT+GK+SVASFV+ Sbjct: 68 AEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 ++ Q G + +G T + R TTP PI L KAL+ +S GV H ++EASSHGL Sbjct: 128 RLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L+A FTN +DH+DYH + YF AK LF +LP+E A++ DDA Sbjct: 188 DQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 247 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ A G VL+VG +G + L Q++ +S G L G FQ Sbjct: 248 DMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NALVAAGL IA G ++ V L +L V GR + T G +YVDYAHT +++ + Sbjct: 308 NALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATRDSGAAVYVDYAHTPDAVATAI 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR+I + G GGDRD GKRP+MG+ A + AD+ IVTDDNPRSEDP IRA+++ Sbjct: 368 KALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAAENADLVIVTDDNPRSEDPAAIRAQVL 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G P E G+R EAI +++L D L+V GKGHET IV + Sbjct: 428 EGAPEATEVGDRAEAILRGVDLLQPGDALLVCGKGHETGQIVGD 471 >gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter autotrophicus Py2] Length = 501 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 201/450 (44%), Positives = 272/450 (60%), Gaps = 16/450 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I G +FVAI G DG FI A+A+GA A+++ A + + + Sbjct: 36 LSADSRRINPGDLFVAIPGTHADGSRFIADAVARGASAVLMEPAAP----RPVLPPHVAL 91 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + R LSL A+R Y + P I AVTGT+GK+SVA F++QI +R G + +G T Sbjct: 92 AFSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKTSVAFFLRQIWERLGHKAAYLG---T 148 Query: 153 ISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I A D LTTP P+ L L L+ +GVTH+++EASSHGLDQ RLDG+ AG Sbjct: 149 IGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHMALEASSHGLDQKRLDGVHFTAGG 208 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNLGRDH+DYH T AYF AK+RLF +++P ++ A+ ++ + A G ++L Sbjct: 209 FTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDATAVAVTGAPFAANALAWAETRGLKLL 268 Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 +G Q + + Q+V + +G + PL G FQ+ NAL+AAGL IA G Sbjct: 269 PIGEGQATGLDIFGTTGSGTGQKVMFA-DGSHA--IVPLVGRFQLDNALLAAGLAIACGA 325 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + LE L L VPGR E +G + R ++VDYAH +L +L +R GR++VV Sbjct: 326 ERPAALEALAYLTGVPGRLERIGDDPRR-PVFVDYAHKPEALATVLDTLRAAVPGRLMVV 384 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRD+GKRP+MG IA AD+ IVTDDNPRSEDP IRAEI+ G G E G+R E Sbjct: 385 FGCGGDRDKGKRPLMGAIAASKADVVIVTDDNPRSEDPAAIRAEILEGAHGAREIGDRAE 444 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AI+ A+ +L D L+VAGKGHET I+ + Sbjct: 445 AIKAAVALLQPGDALIVAGKGHETGQIIGD 474 >gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC 49814] Length = 483 Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 191/448 (42%), Positives = 265/448 (59%), Gaps = 13/448 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR + G++F A++G DG FI AI GA A++ +D I P Sbjct: 18 LTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDE----RDGEWEI----PA 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V R + A+ Y K PE ++AVTGT+GKSS F++QI G S +G Sbjct: 70 IKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHVSASVGTLGA 129 Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + S A + TTP P+ + L+ L+++GVTH ++EASSHGL Q+R+ G++L AG F N Sbjct: 130 VGPSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLAQYRMHGVQLAAGGFLN 189 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH+ + YF AKM+LF ELLP+ +PAII AD + + A A + +VG Sbjct: 190 LSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIATAANLKPFTVG 249 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNALVAAGLCIAIGI 327 ++G + + ++ + Q++ + E + D PL GEFQ NAL AAG+ +++G Sbjct: 250 WRGDHLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQALNALAAAGIALSLGA 309 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D V +EKL V GR E V G I+VD+AHT + L+ +L+ R +GR+I V Sbjct: 310 DPMAVFAAMEKLKGVKGRLELVAETQNGAGIFVDFAHTPDGLDTLLRAARPHAAGRVICV 369 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FGCGGDRD GKRPIMG+IA AD IVTDDNPRSEDP IRA I+ G P E R Sbjct: 370 FGCGGDRDAGKRPIMGEIAAKYADEVIVTDDNPRSEDPASIRAAIMAGAPNATEIDGREA 429 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AI+ I L K DVL++AGKGHET I+ Sbjct: 430 AIKEGISRLKKGDVLMIAGKGHETGQII 457 >gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanibulbus indolifex HEL-45] Length = 493 Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 263/448 (58%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G +F A+ G++ G FI A+ GA A++ + + A SN Sbjct: 23 ITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTDAEGAKIAAEALAGSN 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V D+ R+ L+ A+ +G P ++AVTGT+GK+SV++FV+QI GL + +G Sbjct: 83 AALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVRQIWVEMGLPAVNLGT 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++A TTP PI L + L+ + G+TH ++EASSHGLDQ RLDG+ L A F Sbjct: 143 TGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGLDQRRLDGVTLKAAGF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH+T +AYF AK LF +LP++ A++ DD ++ A GC V++ Sbjct: 203 TNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGIDIAAIARARGCEVIT 262 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 VG G +HL+ Q + + GK + L G FQ N L+AAGL IA G D+ Sbjct: 263 VGRDGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDNVLLAAGLVIACGADA 322 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V + L L V GR + T G ++VDYAHT +++ L +R GR++ + G Sbjct: 323 QEVFDTLPHLTTVRGRMQLAATRDNGAAVFVDYAHTPDAVATALSAMRPHVMGRLVAIVG 382 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 GGDRD+ KRP+MG+ A + AD+ IVTDDNPRSEDP IRA ++ G P E G+R EAI Sbjct: 383 AGGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPASIRAAVLSGAPDAWEVGDRAEAI 442 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++ L D L++AGKGHET V + Sbjct: 443 LRGVDALEPGDALLIAGKGHETGQTVGD 470 >gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium radiotolerans JCM 2831] Length = 485 Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 209/480 (43%), Positives = 284/480 (59%), Gaps = 21/480 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L DL FPE + + ++++++DSR + G +FVA+ G K DG F Sbjct: 4 RLADL----FPEAAGPAA-------DLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAA 52 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 QA +GA A+ A + + V + R+ L+L A+RL G PE ++AVT Sbjct: 53 QAAQRGAAAVAGEGTRP-----ADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVT 107 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQ 180 GT+GKSSVA FV+QI R G + +G ++ AQ LTTP P+ L + L+ L+++ Sbjct: 108 GTAGKSSVADFVRQILARLGRDAASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAE 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVT +++EASSHG++Q RLDG++L A FTNLGRDH+DYH + + Y AK+RLF +LLP Sbjct: 168 GVTDLAMEASSHGIEQRRLDGVRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPP 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 PAI+ AD AY++ V+ A AG V +VG G+ + ++ V Q + G+ Sbjct: 228 GRPAIVNADGAYAERVIAAAEAAGRPVRTVGRGGRDLRVEAVRTEGFAQAARVLFAGRAR 287 Query: 301 DFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D PL GEFQV N A A A D V L+ L VPGR E +G +RGG Sbjct: 288 DLRLPLVGEFQVENALVAAGLALATPAGAADPDGVFAALDHLTGVPGRMERIG-EARGGL 346 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH +LE +L +R +GR++ VFGCGGDRD+GKRP+MG IA LAD+ IVTD Sbjct: 347 CLVDYAHKPEALESVLTALRPFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLADVVIVTD 406 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPR+ED IR I+ PG E G+R EAI +A+ L DVLVVAGKGHET IV + Sbjct: 407 DNPRTEDAAAIRRAILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKGHETGQIVGD 466 >gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Citreicella sp. SE45] Length = 493 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 271/465 (58%), Gaps = 3/465 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + RE +I+ +S DSR + G +F A+ G K G F+ A++QGA A V++ Sbjct: 7 LSELGLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAA-VLT 65 Query: 75 SAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 A Q + T+ S +++ + R+ L+ + +G P ++AVTGT+GK+SVA+FV Sbjct: 66 DAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATFV 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +++ Q G + +G T + R TTP PI L KAL+ + GV H ++EASSHG Sbjct: 126 RRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVEHAAMEASSHG 185 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 LDQ RLDG++L A FTN +DH+DYH + YF AK LF +LP+E A++ DDA Sbjct: 186 LDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARG 245 Query: 254 KEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ A G L+VG QG + L Q++ +S G L G FQ Sbjct: 246 IDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQG 305 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL+AAGL IA G ++ V L KL V GR + T G +YVD+AHT +++ Sbjct: 306 QNALLAAGLVIACGAEAEDVFRALPKLDTVRGRMQLAATRDSGAAVYVDFAHTPDAVSTA 365 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +K +R GR++ + G GGDRD GKRP+MG A + AD+ IVTDDNPRSEDP IR ++ Sbjct: 366 IKALRPHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIVTDDNPRSEDPAAIRLQV 425 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G P IE G+R EAI ++ML D L+V GKGHET IV + Sbjct: 426 LGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCGKGHETGQIVGD 470 >gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter sp. GAI101] Length = 493 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 181/442 (40%), Positives = 254/442 (57%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G++F A+ G+ G FI A+ GA A++ + + + Sbjct: 23 ITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTDATGAAMAADLMASAG 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V D R+ L+ A+ +G P ++AVTGT+GK+SV++FV+QI GLS+ +G Sbjct: 83 VAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVRQIWIEMGLSAVNLGT 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++ TTP PI L +AL+ ++ G+TH ++EASSHGLDQ RLDG+ L A F Sbjct: 143 TGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGLDQRRLDGVTLKAAGF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH T AYF+AK LF +LP++ A+I DD ++ A GC VLS Sbjct: 203 TNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGIDMAAIARARGCEVLS 262 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 VG G +HL Q + GK + L G FQ N L+A GL IA G Sbjct: 263 VGRDGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADNVLLACGLVIACGAKP 322 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A V + + L V GR + T GG ++VDYAHT +++ LK +R GR++ + G Sbjct: 323 ADVFDTIPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAISTALKAMRPHVMGRLVAIVG 382 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 GGDRD KRP+MG+ A AD+ VTDDNPRSEDP IRA +I G P E G+R EAI Sbjct: 383 AGGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVIAGAPDATEVGDRAEAI 442 Query: 450 RTAIEMLNKQDVLVVAGKGHET 471 I+ + D L++AGKGHET Sbjct: 443 LRGIDAIGPGDALLIAGKGHET 464 >gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris TIE-1] gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris TIE-1] Length = 485 Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 202/449 (44%), Positives = 267/449 (59%), Gaps = 18/449 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A+ G K DG F+ A A+ + + P + + Sbjct: 28 DSRAVKPGDLFFALAGAKTDGARFV-------AAAVATGAVAVAGEHRPEGDLAVPFVQL 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP----TS 151 N R L+ A+R Y + PE I AVTGTSGK+SVA+F +QI QR G +S IG T Sbjct: 81 SNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTP 140 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T S + LTTP PI L ++L ++ +G+TH+++EASSHGLDQ RLDG+++ AG FTN Sbjct: 141 TRSVYGS---LTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVAAGGFTN 197 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH T Y NAK+RLF L+ A+I AD S +V++ A G R++++G Sbjct: 198 LSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLRLITIG 257 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G I L QQ+T+ GK PL GEFQ+ NALVAAGL I G D Sbjct: 258 RNGDPGAGIKLIDATVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVIGTGGD 317 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +A LE L PGR + VG + G ++VDYAH ++L L+ +R +++VVF Sbjct: 318 AAASFAALEHLEGAPGRLDLVGARN-GAPVFVDYAHKPDALAKTLQALRPYAKRKLVVVF 376 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 G GGDRD GKRP+MG IA + AD+ I+TDDNPRSEDP IR+ I+ PG E G+R EA Sbjct: 377 GAGGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRSAILAAAPGAREIGDRAEA 436 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IRTAI L D LV+AGKGHET IV + Sbjct: 437 IRTAIGELQPGDALVIAGKGHETGQIVGD 465 >gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Roseobacter denitrificans OCh 114] Length = 493 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 183/461 (39%), Positives = 266/461 (57%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 QL + R+ + ++ DSR ++ G++F A+ G++ G FI A+ GA AI+ +A Sbjct: 10 QLGLTARNGRQATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAA 69 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + + S +++ D+ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+FV+QI Sbjct: 70 GAQLAATELGASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQI 129 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +G T +++ TTP PI L +AL+ + QGVTH ++EASSHGLDQ Sbjct: 130 WTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQ 189 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 RLDG+ L A FTN +DH+DYH T + YF AK LF +LP+++ A+I D ++ Sbjct: 190 RRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDM 249 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A C V++VG +HL + Q V G + L G FQ N + Sbjct: 250 AAIAEARNCPVITVGRDSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVM 309 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +AA L IA G D V + LE L V GR + GT G ++VDYAHT +++ LK + Sbjct: 310 LAAALVIACGEDPQHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATALKAL 369 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR+I + G GGDRD KRP+MG+ A + AD+ VTDDNPRSEDP IRA ++ G Sbjct: 370 RPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAVLLGA 429 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 P IE G+R EAI ++ L D L++AGKGHET +V + Sbjct: 430 PDAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD 470 >gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sphingobium japonicum UT26S] Length = 480 Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 193/461 (41%), Positives = 266/461 (57%), Gaps = 12/461 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F A G + +G FIP A+ GA A+V ++ + Sbjct: 30 DNRKVAPGTVFGAFQGARVNGEDFIPAAVQAGATAVVARPEARVE--------GAIHIAS 81 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 DN R+ + A+R + PE +AVTGT+GK+S +Q+ + G S IG +S Sbjct: 82 DNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTS 141 Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 Q LTTP + +S L +G+TH + EASSHGL Q+R +G+ + A +FTNL R Sbjct: 142 VDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSR 201 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH +YF AKMRLF+E++ + A+++ADD +S +V++RA G RVLSVG QG Sbjct: 202 DHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWADDEWSDKVIQRATKRGLRVLSVGVQG 261 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + + L Q + I VEGK++ PL G +Q NAL AAGL IA G D+ VLE Sbjct: 262 QALRLANRTPTQLGQTLDIEVEGKNYKVNLPLIGAYQAANALTAAGLAIAGGEDAGKVLE 321 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 L ++ V GR E G +YVDYAHT + L ++ +R T GR+I +FG GGDR Sbjct: 322 LLGRVQPVRGRLERAVITKAGAPVYVDYAHTPDGLRAAIEALRPHTRGRLIALFGAGGDR 381 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D GKRP MGK+A DLAD IVTDDNPRSE+P IRA ++ G PG E G R AI AI Sbjct: 382 DAGKRPQMGKVAADLADHVIVTDDNPRSEEPSAIRAAVMAGAPGAEEIGGRRAAIAAAIA 441 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 D++++AGKGHE I+ G++ + D + RE G Sbjct: 442 QAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 480 >gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicaulis alexandrii HTCC2633] Length = 485 Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 190/450 (42%), Positives = 272/450 (60%), Gaps = 10/450 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G +F A+ G K DG FIP AI +GA I+ + + Sbjct: 23 EVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGAVCILAPKG---------VTA 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ ++ + LS A+ Y + P I A+TGT+GKSS F++QI ++G+ + +G Sbjct: 74 PVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEFLRQIWAKAGIEAAALG 133 Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +S D TTP I L K+L L+ +GVTH+++EASSHGL Q R+DG++L Sbjct: 134 TLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASSHGLKQRRMDGVRLSLV 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+DYH + YF++KMRLF L P +PA+I D +S+ V + A +AG Sbjct: 194 GFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSDWSQRVAQAAQSAGLSP 253 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + +G++G+ + + ++ Q V S +G++ + PL GEFQ NAL AA + IA G+ Sbjct: 254 VEIGWRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLIGEFQAANALGAAAMAIASGV 313 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 E + +L V GR + VGT G + +DYAHT + L+ +L+ R T GRII+V Sbjct: 314 SPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLDYAHTPDGLDKLLRAARPHTQGRIILV 373 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FG GGDRD KR MG+IA L+D+AIVTDDNPRSEDP IR I+ PG E G+R Sbjct: 374 FGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPRSEDPAGIRKTILAACPGAQEIGDREA 433 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AIR IEML DVL+VAGKGHET I+ + Sbjct: 434 AIRAGIEMLKAGDVLLVAGKGHETGQILAD 463 >gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caulobacter sp. K31] gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31] Length = 485 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 203/455 (44%), Positives = 278/455 (61%), Gaps = 15/455 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR ++ G++F A+ G+K DG FI AIA GA AI+ ++ S Sbjct: 19 ITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIASGAAAILAPD--DVEGLS------ 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + R+ +L A++ + + P +AVTGT+GK+SVA F +QI R G + +G Sbjct: 71 VPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAASMGT 130 Query: 150 TSTISSFA--QDNRLT-----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + S D +LT TP +A+ ++ L+ GVTH++VEASSHG+DQ RLDG+ Sbjct: 131 LGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRLDGV 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +L A FTN +DH+DYH T Y AK+RLFE LLP+ A++ AD A Sbjct: 191 RLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASAAVT 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +G +LSVG++G+ + L + Q++ I+ + + FD L PL G+FQ N LVAAGL Sbjct: 251 SGQTILSVGHEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAAGLV 310 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A G D + LE L GR + VGT +RGG YVDYAHT + LE +L +R T G Sbjct: 311 LATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYVDYAHTPDGLETVLAALRPHTRG 370 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++IVVFG GGDRD+GKRP+MG+IA LAD+AIVTDDNPRSE+P IRA I+ PG E Sbjct: 371 KLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSEEPASIRAAILAAAPGAQEY 430 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+R EAIR +L DVLVVAGKGHE +V Sbjct: 431 GDRREAIRAGAALLADGDVLVVAGKGHEQGQLVAG 465 >gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maricaulis maris MCS10] Length = 483 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 268/452 (59%), Gaps = 10/452 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ + ++ DSR ++ G++F A+ G K G FIP+A+ GA I+ + Sbjct: 18 EQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAGASVILTDE---------PV 68 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++ V L+ A+R Y + P +I+A+TGT+GKSS F++QI +G+ + Sbjct: 69 EAPVPVIAVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVEFLRQIWAGAGIEAAC 128 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T + + TTP + L AL L+ +GVTH+ +EASSHGL QHR+DG++L Sbjct: 129 LGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEASSHGLKQHRMDGVRLQ 188 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G+FTNL +DH+DYH YF +K++LF E LP + A+I D + ++ A G Sbjct: 189 VGAFTNLTQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDSEWGGKMAASARERGL 248 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 VL++G++G + ++++ Q V + +G++ PL GEFQ+ NAL AA + ++ Sbjct: 249 EVLTMGWRGSDLAIREITPRAASQSVIFAWKGREHALDIPLVGEFQILNALGAAAIALSD 308 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ A VL+ L+ L VPGR E VG + G + VDYAHT + L+ +L+ R T GR+I Sbjct: 309 GVAEASVLDTLKGLAGVPGRLEKVGETAAGAPVLVDYAHTPDGLDKLLRAARPHTRGRVI 368 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 V+FGCGGDRD KR MG IA + AD IVTDDNPRSEDP IR ++ G P E +R Sbjct: 369 VIFGCGGDRDASKRAKMGVIAANQADHVIVTDDNPRSEDPAAIRKAVLKGCPRAEEIADR 428 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +AIR + ML D L++AGKGHET V + Sbjct: 429 AQAIRHGVAMLKAGDCLLIAGKGHETGQTVGD 460 >gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB18] Length = 511 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 208/475 (43%), Positives = 279/475 (58%), Gaps = 12/475 (2%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D I EL + + E ++ V+SDSR + +G +F A+ G DG +I QAI Sbjct: 23 DWINMKLRELFSDDVAIAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAI 82 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A GA A+V A +R V N R+ L+L A+R++ + P I AVTGTS Sbjct: 83 ANGAVAVVGEQFPDSDHRVALVR-------VANPRRALALAAARMFPRQPATIAAVTGTS 135 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+SVA+F +QI QR G ++ IG ++ + LTTP PI L + + ++ +GVT Sbjct: 136 GKTSVAAFTRQIWQRLGFAAASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVT 195 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H+++EASSHGLDQ RLDG+++ A FTNL RDH+DYH Y AK+RLF +L+ Sbjct: 196 HLALEASSHGLDQFRLDGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGA 255 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDF 300 A+I AD +S+ V+ A G R+++VG G I L Q++T+ G++ Sbjct: 256 AVISADHEHSEAVIAAARARGLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRER 315 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL GEFQ+ NALVAAGL I G D+ V L+ L GR E VG + G I+V Sbjct: 316 GLRLPLVGEFQIENALVAAGLAIGTGGDAEQVFAALQHLEGAKGRLELVG-DRNGAPIFV 374 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAH ++L L+ +R ++IVVFG GGDRD GKRP+MG IA LAD IVTDDNP Sbjct: 375 DYAHKPDALAKALQALRPYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVTDDNP 434 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP IRA I+ G +E G+R EAIRTAI L D L++AGKGHET I+ Sbjct: 435 RSEDPAAIRAAIMAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKGHETGQII 489 >gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter litoralis Och 149] Length = 493 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 183/466 (39%), Positives = 271/466 (58%), Gaps = 6/466 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI--- 71 ++QL + R+ + ++ DSR ++ G++F A+ G++ G FI A+ GA AI Sbjct: 8 LSQLGLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAILTD 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +V + + + A S+ +++ D+ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+ Sbjct: 68 IVGARLAATELGA---SDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTSVAT 124 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 FV+QI G + +G T +++ TTP PI L +AL+ + +GVTH ++EASS Sbjct: 125 FVRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAMEASS 184 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ RLDG+ L A FTN +DH+DYH T + YF AK LF +LP+++ A+I D Sbjct: 185 HGLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVD 244 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ A C V++VG +HL + Q V GK + L G FQ Sbjct: 245 RGVDMAAIAKARNCPVITVGRDSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLIGGFQ 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N ++AA L IA G + V + LE L V GR + GT G ++VDYAHT +++ Sbjct: 305 AENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIAT 364 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GR+I + G GGDRD KRP+MG+ A + AD+ VTDDNPRSEDP IRA Sbjct: 365 ALKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPATIRAA 424 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++ G P IE G+R EAI ++ L D L++AGKGHET +V + Sbjct: 425 VLLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD 470 >gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris HaA2] gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris HaA2] Length = 485 Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 213/484 (44%), Positives = 282/484 (58%), Gaps = 26/484 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL D + +Q + ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDLFSDD--------TAITVQAAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A AI + D P + + N R+ L+L A+R++ + P+ I AV Sbjct: 53 -------AAAIEAGAVAVAGDHPPAGDLAVPFVRLTNPRRALALAAARMFPQQPQTIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TGTSGK+SVA+F +QI QR G +S IG T T S + LTTP PI L ++L Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDA 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH Y NAK+RLF + Sbjct: 163 IAREGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRD 222 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293 L+ A+I AD S EV+ A G R++SVG G I L Q++T+ Sbjct: 223 LVVDGGAAVISADHDCSAEVIDAARARGLRLISVGRNGDAGAGIRLIAAAVDGFAQRLTL 282 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+++ PL GEFQ+ NALVAAGL I G D A V L+ L PGR E VG + Sbjct: 283 DHAGRNYQVHLPLVGEFQIENALVAAGLVIGTGGDPAAVFAALDHLEGAPGRLELVGERN 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD Sbjct: 343 -GAPVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAESADAV 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 IVTDDNPR EDP IRA I+ PG E G+R EAIRTAI L D LV+AGKGHET Sbjct: 402 IVTDDNPRREDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQ 461 Query: 474 IVTN 477 IV + Sbjct: 462 IVGD 465 >gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium chloromethanicum CM4] Length = 492 Score = 339 bits (869), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 215/452 (47%), Positives = 278/452 (61%), Gaps = 10/452 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A A GA A+ +D Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-EDLP---- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI R G S + Sbjct: 80 EATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASL 139 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +++ AQ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L A Sbjct: 140 GTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTA 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A AG Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCI 323 + + G G FI L + Q +T+S GKD+ PL G FQV N A A Sbjct: 260 IRTTGRGGDFIRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A D A V LE L VPGR E +G + GG VDYAH +LE +L +R SGR Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E G Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIRT + L DVLVVAGKGHET IV Sbjct: 439 DRAEAIRTGVRDLRAGDVLVVAGKGHETGQIV 470 >gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Jannaschia sp. CCS1] Length = 490 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 187/458 (40%), Positives = 264/458 (57%), Gaps = 1/458 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + P + +++++ DSR +QAG +F A+ G + G FI A+ GA AI+ Sbjct: 5 LSDLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTD 64 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 A + + ++ ++VV++ L+ A+ +G PE ++AVTGT+GK+SVASF + Sbjct: 65 RAGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTR 124 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + G+ + IG T +F TTP P+ L + L+ + + GVTH ++EASSHGL Sbjct: 125 QIWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG++L A +FTNL +DH+DYH T +AYF AK+RLF LLP A++ DD + Sbjct: 185 DQKRMDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGL 244 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V + G V+ V Y + + Q V +G L G FQ Sbjct: 245 RVAEACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAM 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L AAGL IA G D V L K+ V GR + S G IYVDY+HT +SLE+ L Sbjct: 305 NVLTAAGLVIAGGEDPEDVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVAL 364 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++VVFG GGDRD KRP+MG A +D+A VTDDNPR+EDP IRA ++ Sbjct: 365 KALRPHVLGRLVVVFGAGGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P +R EAI A++ML D L++AGKGHET Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKGHET 462 >gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacterium extorquens AM1] Length = 492 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 212/452 (46%), Positives = 276/452 (61%), Gaps = 10/452 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A A GA A+ A + Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-----ADLP 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI R G S + Sbjct: 80 EATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASL 139 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +++ A+ LTTP P+ L + L+ L +G+T +++EASSHG++Q RLDG++L A Sbjct: 140 GTVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGVELTA 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A AG Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCI 323 + + G G FI L + Q +T++ GKD+ PL G FQV N A A Sbjct: 260 IRTTGRGGDFIRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A D A V LE L VPGR E +G + GG VDYAH +LE +L +R SGR Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E G Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIR A+ L DVLVVAGKGHET IV Sbjct: 439 DRAEAIRAAVRDLRAGDVLVVAGKGHETGQIV 470 >gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58] Length = 484 Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 190/461 (41%), Positives = 271/461 (58%), Gaps = 12/461 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F A G + +G +I +A+ GA AIV + D + I + P Sbjct: 34 DNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGAIAIVARPEAQV-DGAIHIAAANP---- 88 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 R+ + A+R + P+ +AVTGT+GK+S +QI + G ++ IG +S Sbjct: 89 ---RQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELARQIWRMLGHNAASIGTLGVTTS 145 Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 Q LTTP + ++ L +GVTH + EASSHGLDQ+R +G+ ++AG+FTNL R Sbjct: 146 VDQVSTGLTTPDIVTFLANMAGLRREGVTHAAFEASSHGLDQYRTEGLPVVAGAFTNLSR 205 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH +YF+AKMRLF+E++ + A+I+ADD++S++ + RA G RVLSVG QG Sbjct: 206 DHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWSEKAIARATKRGLRVLSVGVQG 265 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + + L Q + I EG + PL G +Q NAL AAGL IA G D+A V+E Sbjct: 266 RALQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQAANALTAAGLVIATGGDAARVME 325 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 L ++ V GR E + G +YVDYAHT + L ++ +R T GR+I +FG GGDR Sbjct: 326 LLGRVQPVRGRLERAVISQTGAPVYVDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDR 385 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D GKRP MGK+A DL+D IVTDDNPRSE+P IRA ++ G P E G R +AI AI Sbjct: 386 DAGKRPQMGKVAADLSDHVIVTDDNPRSEEPSAIRAAVLAGAPDAQEIGGRRDAIAAAIA 445 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 D++++AGKGHE I+ G++ + D + RE G Sbjct: 446 QAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 484 >gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Bradyrhizobium japonicum USDA 110] Length = 485 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 218/480 (45%), Positives = 285/480 (59%), Gaps = 22/480 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DLI N +I P ++ V+ DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRDLIG-------NDAAIEPA-VAALEVTGVALDSRVVRPGDLFFALAGSKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A V + A ++ A P + V N R+ L+L A+R + P I AV Sbjct: 53 --------DAAVAAGAVAIVGDHAPDGCKVPFIAVANPRRALALAAARFFPAQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI +R G +S IG +S LTTP PI L + + ++ Sbjct: 105 TGTSGKTSVAAFTRQIWERLGHASASIGTIGLVSPKRTVYGSLTTPDPIALHRQMDEIAR 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T Y AK+RLF EL+P Sbjct: 165 EGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVP 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISV 295 A+I AD S E + A G RV++VG G + I L +V Q++T+ Sbjct: 225 PGGAAVISADHDCSAEAIDAAKARGLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 GK + L PL GEFQV NALV+AGL I G D+A V LE L GR E VG + G Sbjct: 285 RGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVGERN-G 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I+VDYAH ++L L+ +R R++VVFG GGDRD GKRPIMG+IA + AD I+ Sbjct: 344 APIFVDYAHKPDALAKALQALRPYAKRRLVVVFGAGGDRDAGKRPIMGEIAAENADGVII 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSE PE IRA I+ G E G+R AIR AIE L + D L++AGKGHET IV Sbjct: 404 TDDNPRSEQPEAIRAAILATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKGHETGQIV 463 >gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dinoroseobacter shibae DFL 12] Length = 493 Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 180/453 (39%), Positives = 265/453 (58%), Gaps = 1/453 (0%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R + ++ DSR ++ G++F + G++ G FI A+ GA AI+ + + Sbjct: 18 RGRPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVL 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++V ++ R+ S A+ YG P ++ VTGT+GK+SVASF +Q+ Q G ++ Sbjct: 78 DGAEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAA 137 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T F+ D TTP P+ L AL+ +++QG+TH ++EASSHGLDQ RLDG++L+ Sbjct: 138 NIGTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLV 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTN +DH+DYH+T +AYF AK LF +L + A+I DD ++M AH AG Sbjct: 198 AAGFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGA 257 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +L+VG ++ + L + Q++ + +G L G FQ N LVA GL +A Sbjct: 258 ELLTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMA 317 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G ++ L +L V GR + V G ++VDYAHT ++L+ L+ +R GR+ Sbjct: 318 TGAQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALRPHVLGRL 377 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 +VVFG GGDRD GKRP+MG A AD+ VTDDNPRSEDP IRA++ G P + + Sbjct: 378 VVVFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCPEATDVPD 437 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R EAI ++ L DVL++AGKGHET V + Sbjct: 438 RAEAILRGVDALEPGDVLLIAGKGHETGQTVGD 470 >gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2083] gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium HTCC2083] Length = 487 Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 190/469 (40%), Positives = 267/469 (56%), Gaps = 11/469 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL + + R I ++ DSR +QAG++F A+ G+K G FI A+ A AI+ Sbjct: 1 MQQLGLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTD 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFV 133 + + S+ I+V D+ R L+ FAS LY G P+ + AVTGT+GK+SV++FV Sbjct: 61 AVGAEIAADELANSDAAIIVTDDPRSALA-FASALYFGAQPQIMTAVTGTNGKTSVSTFV 119 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +QI L + +G T S TTP PI L + L+ L +G++H ++EASSHG Sbjct: 120 RQIWNLLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHG 179 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 LDQ RLDG+ L A FTN +DH+DYH T +AYF+AKM LF +L + A++ DD Sbjct: 180 LDQRRLDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKG 239 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPG 308 EV A G ++ VG + +C + + Q + + F L G Sbjct: 240 AEVAMIAQAHGHELIGVGRDPE----ADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIG 295 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ N L+AAGL IA G D A V + L L V GR + T + G ++VDYAHT ++ Sbjct: 296 GFQAENVLLAAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGAAVFVDYAHTPDA 355 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +E LK +R GR++ + G GGDRD+GKRP+MG+ A + AD+ VTDDNPRSEDP I Sbjct: 356 VETALKAMRPHVMGRLVALIGAGGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPALI 415 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RA ++ G P IE +R EAI A++ L D L++AGKGHET V + Sbjct: 416 RAAVMGGAPEAIEVADRAEAILRAVDALGPGDALLIAGKGHETGQTVGD 464 >gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. ORS278] gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Bradyrhizobium sp. ORS278] Length = 486 Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 216/486 (44%), Positives = 285/486 (58%), Gaps = 29/486 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL L +Q + P + +++ +++DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLHDL-------LGDQAGLDP-RVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA A+ A + D P + + N R+ L+L ASR++ + P I AV Sbjct: 53 AAAVAAGAIAVAGHEAPA-GDLP------VPFVSLPNPRRALALAASRVFPRQPATIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALS 175 TGTSGK+SVA+F +QI Q G ++ IG IS D R LTTP PI L + + Sbjct: 106 TGTSGKTSVAAFTRQIWQSLGHNAASIGTVGLIS----DKRTVYGSLTTPDPIALHRQID 161 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 ++ GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH Y NAK+RLF Sbjct: 162 EITQDGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFR 221 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQV 291 +L+P PA+I AD S EV+ A G R+++VG G I L QQ+ Sbjct: 222 DLVPPGGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQL 281 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + G+ PL G FQ+ NALVAAGL I G D V E LEKL GR E VG Sbjct: 282 ELQHCGRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVGE 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 ++ G I++DYAH ++L L +R +++VVFG GGDRD GKRP+MG+IA AD Sbjct: 342 HN-GAPIFIDYAHKPDALAKALHALRPYAQRKLVVVFGAGGDRDSGKRPLMGEIAAAGAD 400 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IVTDDNPRSE+P IRA I+ PG E G+R EAIR AI L D LV+AGKGHET Sbjct: 401 RVIVTDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKGHET 460 Query: 472 VHIVTN 477 I+ + Sbjct: 461 GQIIGD 466 >gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Methylobacterium extorquens DM4] gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Methylobacterium extorquens DM4] Length = 492 Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 218/452 (48%), Positives = 282/452 (62%), Gaps = 10/452 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++DSR + G +FVA+ G DG LF A A GA A+ A + Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRP-----ADLP 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI R G S + Sbjct: 80 EATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASL 139 Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +++ AQ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L A Sbjct: 140 GTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTA 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A AG Sbjct: 200 AAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHA 259 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--- 323 + + G G FI L + Q +T+S KD+ PL G FQV NALVAAGL + Sbjct: 260 IRTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLALATQ 319 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A D A V LE L VPGR E +G + GG VDYAH +LE +L +R SGR Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFASGR 378 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E G Sbjct: 379 LVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEEIG 438 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIR + L DVLVVAGKGHET IV Sbjct: 439 DRAEAIRAGVRDLRAGDVLVVAGKGHETGQIV 470 >gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium extorquens PA1] gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium extorquens PA1] Length = 492 Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 212/454 (46%), Positives = 277/454 (61%), Gaps = 14/454 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSAT 85 R + +++DSR + G +FVA+ G DG LF A A GA A+ L + +A Sbjct: 25 RPVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAAAAAAGAVAVAGEGTRPDDLPEATAW 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI R G S Sbjct: 85 IE-------VADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESA 137 Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G +++ A+ LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG++L Sbjct: 138 SLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVEL 197 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A +FTNLGRDH+DYH T + Y +AK+RLF LLPK PAI+ AD AY++ V+ A AG Sbjct: 198 TAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAG 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGL 321 + + G G FI L + Q +T++ GKD+ PL G FQV N A A Sbjct: 258 HAIRTTGRGGDFIRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLALA 317 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A D A V LE L VPGR E +G + GG VDYAH +LE +L +R S Sbjct: 318 TPAGQADPAGVFAALEGLTGVPGRMERIG-EANGGLCLVDYAHKPEALEHVLSALRPFAS 376 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNPR+E+P IRA I+ PG E Sbjct: 377 GRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGAEE 436 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G+R EAIR + L DVLVVAGKGHET IV Sbjct: 437 IGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIV 470 >gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17025] Length = 495 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 188/464 (40%), Positives = 267/464 (57%), Gaps = 3/464 (0%) Query: 15 INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++ L + P+ R E + ++ DSRH++ G++F A+ G+ G F+P A+A GA AI+ Sbjct: 8 LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +A + A S ++V ++ R+ L+ A+ +G+ P ++AVTGT+GK+SVA+F Sbjct: 68 TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++EASSH Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E ++ DD Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ A + G +V+ G+ + + L Q + S +G PL G FQ Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +N VAAGL I G V +L V GR + T G ++VDYAHT ++L Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK +R GRIIVVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP IR Sbjct: 368 ALKALRPHVMGRIIVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I+ P E G+R EAI ++ L D L++AGKGHE IV Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHEAGQIV 471 >gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sagittula stellata E-37] Length = 496 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 177/463 (38%), Positives = 269/463 (58%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + R+ K+ +++ DSR ++ G++F A+ G + G FI A+ GA A++ Sbjct: 11 LRDLGLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGAGAVLTD 70 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + ++ ++V ++ R+ L+ ++ +G PE ++AVTGT+GK+SVA+F + Sbjct: 71 AAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTSVATFTR 130 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI Q GL + +G T + + TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 131 QIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAMEASSHGL 190 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 Q RLDG++L+A FTN +DH+DYH + + YF AK LF +LP++ A+I DD Sbjct: 191 SQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINIDDPRGV 250 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +++ A G VL+VG + I L+ Q++ +S EG+ L G FQ N Sbjct: 251 DMVAIARARGQEVLTVGREAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIGGFQADN 310 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+AAGL IA G D V + L L V GR + G ++VDYAHT +++ +K Sbjct: 311 VLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGAAVFVDYAHTPDAVATAIK 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD+GKR +MG+ A + AD IVTDDNPRSEDP IRA ++ Sbjct: 371 ALRPHVMGRLVAIVGAGGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDPASIRAMVME 430 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G P +E G+R EAI ++ L D L++ GKGHE+ IV + Sbjct: 431 GAPEALEVGDRAEAILRGVDALGPGDALLICGKGHESGQIVGD 473 >gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. CCS2] Length = 495 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 185/470 (39%), Positives = 267/470 (56%), Gaps = 7/470 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L + RE +I ++ DSR ++ G++F A+ G + G FI A+ A AI+ Sbjct: 4 LAELGLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTD 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++V + R+ L+ AS +G HP+ ++AVTGT+GK+SV++F + Sbjct: 64 AKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCR 123 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + L +G T ++ + TTP PI L + ++ + G+THV++EASSHGL Sbjct: 124 QIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGL 183 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A F+N +DH+DYH+T +AYF+AKM LF+ +L ++ A+I DD K Sbjct: 184 DQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGK 243 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 EV G V+ VG + + L Q + +G+ L G FQ Sbjct: 244 EVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAE 303 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A+GL IA G D V + L+ L V GR E T G ++VDYAHT +++E L Sbjct: 304 NVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGAAVFVDYAHTPDAVETAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GRIIV+ G GGDRD GKRP+MG A ADI IVTDDNPRSEDP IRA ++ Sbjct: 364 RAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDDNPRSEDPAAIRAAVM 423 Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G E G+R EAI I+ML D L++AGKGHET +V + Sbjct: 424 AGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKGHETGQVVGD 473 >gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2654] Length = 495 Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 188/450 (41%), Positives = 257/450 (57%), Gaps = 1/450 (0%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S DSR ++ G +F A+ G+K G FI A+ A AI+ + S Sbjct: 23 EITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTDREGARIAADELAAS 82 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 T ++V ++ R L+ A+ +G PE ++AVTGT+GK+SVASF +QI GL + IG Sbjct: 83 KTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTRQIWTELGLMAANIG 142 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +FA + TTP PI L + L+ +S GVTH ++EASSHGLDQ RL+G+ L A Sbjct: 143 TTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVTHAAMEASSHGLDQRRLEGVHLAAAG 202 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTN +DH+DYH + YF AK RLF +LP + A++ DD +E+ + A G V+ Sbjct: 203 FTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGRELEEIAQERGQEVI 262 Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+G + + L QQ+ G+ L G FQ N LVAAGL IA G Sbjct: 263 SIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAENVLVAAGLAIASGS 322 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D V L V GR + G I+VDYAHT ++L L+ +R G+++VV Sbjct: 323 DPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVDYAHTPDALATALEALRPHVMGKLVVV 382 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FG GGDRD KR +MGK A D AD+ IVTDDNPR+EDP IRA ++ G P E G+R E Sbjct: 383 FGAGGDRDTTKRKLMGKAAADYADVVIVTDDNPRTEDPAAIRAMVLEGCPDANEYGDRAE 442 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AI ++ML+ D L++AGKGHET IV + Sbjct: 443 AILRGVDMLDPGDALLIAGKGHETGQIVGD 472 >gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Loktanella vestfoldensis SKA53] Length = 492 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 188/475 (39%), Positives = 265/475 (55%), Gaps = 6/475 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + Q R+ I ++ DSR + G +F A+ G K G FI A+ GA A++ Sbjct: 4 LTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD 63 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S+ ++V ++ R+ L+ AS +G HP ++AVTGT+GK+SV+SF + Sbjct: 64 AAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCR 123 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI + GL+ +G T ++A + TTP PI L + L+ + G+THV++EASSHGL Sbjct: 124 QIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGL 183 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L A FTN +DH+DYH T ++YF AKM LF +L ++ A++ DD Sbjct: 184 DQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGP 243 Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V G V+ VG + L Q + + +G+ L G FQ Sbjct: 244 VVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAE 303 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL IA G D V L +L V GR E T + G ++VDYAHT +++E L Sbjct: 304 NVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGAAVFVDYAHTPDAVETAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GRI+ + G GGDRD KRP+MG A + AD IVTDDNPRSEDP IRA ++ Sbjct: 364 KALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVL 423 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G G E +R EAI I+ML D L++AGKGHE+ I+ G+ M D Sbjct: 424 AGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQII--GDTIMPFD 476 >gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris CGA009] gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rhodopseudomonas palustris CGA009] Length = 485 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 203/455 (44%), Positives = 271/455 (59%), Gaps = 18/455 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G +F A+ G K DG F+ A A+ + + + Sbjct: 22 IGGLAVDSRAVKPGDLFFALAGAKTDGARFV-------AAAVAAGAVAVAGEHRPEGDLS 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + + N R L+ A+R Y + PE I AVTGTSGK+SVA+F +QI QR G ++ IG Sbjct: 75 VPFVQLSNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHAAASIGT 134 Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T T S + LTTP PI L ++L ++ +G+TH+++EASSHGLDQ RLDG+++ Sbjct: 135 IGLVTPTRSVYGS---LTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVA 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 AG FTNL RDH+DYH T Y NAK+RLF L+ A+I AD S +V++ A G Sbjct: 192 AGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGL 251 Query: 266 RVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R++++G G I L QQ+T+ GK PL GEFQ+ NALVAAGL Sbjct: 252 RLITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLV 311 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I G D+A LE L PGR + VG + G ++VDYAH ++L L+ +R Sbjct: 312 IGTGGDAAASFAALEHLEGAPGRLDLVGARN-GAPVFVDYAHKPDALAKTLQALRPYAKR 370 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 +++VVFG GGDRD GKRP+MG IA + AD+ I+TDDNPRSEDP IRA I+ PG E Sbjct: 371 KLVVVFGAGGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRAAILAAAPGAREI 430 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+R EAIRTAI L D LV+AGKGHET IV + Sbjct: 431 GDRAEAIRTAIGELQPGDALVIAGKGHETGQIVGD 465 >gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum rubrum ATCC 11170] Length = 493 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 191/466 (40%), Positives = 264/466 (56%), Gaps = 7/466 (1%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR + GW+F A+ G K DG FIP A+A GA A++ +L + Sbjct: 30 IAGLTADSRAVAPGWLFAALPGVKADGRAFIPAALAAGASAVLAPEGTALPP-----DAP 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ N R+ + A+ G P ++AVTGT+GK+S SF +QI R G ++ +G Sbjct: 85 AALVTAANPRQAFARMAAAFAGAQPATVVAVTGTNGKTSSVSFTRQIWDRLGRTAASLGT 144 Query: 150 TSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 S + + +TTP P+ L K L+ ++ GV +++EASSHGLDQ+RLDG++L A + Sbjct: 145 LGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDALAMEASSHGLDQYRLDGVRLSAAA 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T AY AK RLF E+L +E A++ ADD + + G VL Sbjct: 205 FTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAVLNADDPAFPTLAALCRDRGQSVL 264 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G K + L V A + Q + + + G+ L PL G+FQ N L A GL IA G Sbjct: 265 DYGRSAKTLRLAGVSAKAHGQSLDLELFGRHHSVLLPLVGDFQAMNVLCALGLAIATGAP 324 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L L VPGR E V + G +YVDYAHT + L L+ +R G+++ VF Sbjct: 325 VDAAVATLASLEGVPGRLEMVARRASGAPVYVDYAHTPDGLVTALRALRPHCRGKLVCVF 384 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448 GCGGDRD+ KRP+MG+ + AD+AI+TDDNPRSEDP IRAE G P IE R A Sbjct: 385 GCGGDRDRAKRPLMGRAVAEGADVAILTDDNPRSEDPAAIRAEARVGCPDAIEIDGRDAA 444 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 IR + +L D+LV+AGKGHET + VD D R +G Sbjct: 445 IRAGVALLGPNDLLVIAGKGHETGQTIGTVVHPF-VDADHARAAVG 489 >gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas palustris DX-1] Length = 485 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 212/484 (43%), Positives = 281/484 (58%), Gaps = 26/484 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL + + +R I ++ DSR ++ G +F A+ G K DG F+ Sbjct: 1 MKLRDLFSAE--------TEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A AI + + P + + N R L+ A+R Y + PE I AV Sbjct: 53 -------AAAIAAGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TGTSGK+SVA+F +QI QR G +S IG T T S + LTTP PI L ++L Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDE 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T Y NAK+RLF Sbjct: 163 IAGEGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRH 222 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293 L+ A+I AD S EV++ A G R++++G G + I L Q +T+ Sbjct: 223 LVQDGGAAVIAADHDCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTV 282 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + G+ + PL GEFQ+ NALVAAGL I G DSA LE L PGR + VG + Sbjct: 283 AHAGRRYSIKLPLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVGAH- 341 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA + AD Sbjct: 342 RGAPVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAEHADTV 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 IVTDDNPRSEDP IRA I+ PG G+R EAIRTAI L D LV+AGKGHET Sbjct: 402 IVTDDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKGHETGQ 461 Query: 474 IVTN 477 IV + Sbjct: 462 IVGD 465 >gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. MED193] Length = 499 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 180/446 (40%), Positives = 265/446 (59%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ ++ DSR G +F A+ G++ G FIP A+ QGA AI+ +A + S+ Sbjct: 29 ISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTDAAGAKIAAQPLEESH 88 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++V++ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+FV+QI G + +G Sbjct: 89 AALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVRQIWCALGHEAVNLGT 148 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +++ TTP PI L +AL+ + GVTH ++EASSHGLDQ RLDG++L A F Sbjct: 149 TGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGLDQCRLDGVQLAAAGF 208 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH+T +AYF AK LF +LP++ A+I +D+ E+ A G V+S Sbjct: 209 TNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGAEMRAVAAARGQEVIS 268 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 +G I L + Q + + + + L G FQ N L+A GL IA G D Sbjct: 269 IGRGLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAENVLLACGLVIAGGEDP 328 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A V + L +L V GR E T G ++VDYAHT +++ +K +R GR++ + G Sbjct: 329 AAVFDTLPQLTTVRGRMEHAATRDNGASVFVDYAHTPDAVATAIKALRPHVLGRLVAIVG 388 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + G P +E G+R EAI Sbjct: 389 AGGDRDATKRPLMGRAAQENADVVIVTDDNPRSEDPAVIRAAVRGGAPDALEVGDRAEAI 448 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ML+ D L++ GKGHE+ +V Sbjct: 449 LRGVDMLSTGDALLICGKGHESGQVV 474 >gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium HTCC2150] Length = 495 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 185/464 (39%), Positives = 267/464 (57%), Gaps = 1/464 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L + M +E +I +S DSR ++ G +F A+ G G FI A+ QGA AI+ Sbjct: 10 LAELGLTAMGAQEAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTD 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + S +++ + R+ L+ A+ +G PE +AVTGT+GK+SVASF + Sbjct: 70 QKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTR 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP PI L + ++ ++ G+THV++EASSHGL Sbjct: 130 QIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGL 189 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG++L A FTN +DH+DYH +AYFNAK LF +L ++ A++ +DA + Sbjct: 190 EQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQ 249 Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + A G VLSVG + I + Q V + F+ PL G FQ Sbjct: 250 DISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPLIGGFQAE 309 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL IA G D+ + L +L V GR E T G I+VDYAHT ++L Sbjct: 310 NVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGASIFVDYAHTPDALATAC 369 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GR+IVVFG GGDRD+GKRP+MG+ A AD+ VTDDNPRSEDP IR E++ Sbjct: 370 RALRPHVLGRLIVVFGAGGDRDKGKRPLMGQAAEAHADVIFVTDDNPRSEDPAVIRREVM 429 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G IE +R EAI ++ L DVL++AGKGHET ++ + Sbjct: 430 DGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKGHETGQVIGD 473 >gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 489 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 196/481 (40%), Positives = 274/481 (56%), Gaps = 14/481 (2%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P+ +I+ +++DSR I+ G IF A+ G K DG FI A+ GA A++ + Sbjct: 14 LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWP 73 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 T P+++ N R L+L A+ L G P+++ A+TGT+GK+S A F++QI Sbjct: 74 TGVPTC----PLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQ 129 Query: 141 GLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + IG A+D LTTP P+ LA L+ L+ G HV++EASSHGL+ Sbjct: 130 GFKAAAIGTLGLTG--AEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLE 187 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK 254 Q RLDG+ L A FTNL RDH+DYH T +AY AK++LF+ LLP+++ A AD DA + Sbjct: 188 QGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTL 247 Query: 255 EVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + ++ A R+ VG QG + L A+ Q+++I G L P+PG FQ Sbjct: 248 QAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQAD 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A L + A +L L L V GR E G YVDYAHT ++L +L Sbjct: 308 NVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLL 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++R G+++VV G GGDRD GKRP+MG+ A+ ADIAI+TDDNPR+E+P IRAEI Sbjct: 368 ASLRPHARGKLVVVLGAGGDRDSGKRPLMGQEAIKGADIAIITDDNPRTENPASIRAEIK 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 G P +E +R +AI A+ ML DVLVVAGKGHE I+ N D ++R + Sbjct: 428 AGAPQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGNTILPFD-DAAVLRTLA 486 Query: 494 G 494 G Sbjct: 487 G 487 >gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter capsulatus SB 1003] Length = 494 Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 187/456 (41%), Positives = 261/456 (57%), Gaps = 18/456 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G +F A+ G + G F+ A+ +GA A++ A A Sbjct: 23 VTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGEDTARQALAGGT 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV++ R LS A+ +G P ++AVTGT+GK+SVA+F + I Q GL + IG Sbjct: 83 VPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQALGLDAANIGT 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +FA + TTP PI L + L+ +++ GVTH ++EASSHGL Q RLDG+ L A +F Sbjct: 143 TGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGLAQRRLDGVMLKAAAF 202 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +DH+DYH T YF+AK LF +LP+E A+I DD +++RA G +++ Sbjct: 203 TNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVERARARGQKLIR 262 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320 VG QG C I + Q G+D FL+ PL G FQ N L AAG Sbjct: 263 VG-QG------DTCEIQLQGQ-RFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLTAAG 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L IA G + V E L +L V GR + T + G ++VDYAHT +++E L+ +R Sbjct: 315 LVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGATVFVDYAHTPDAVETALRALRPHV 374 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439 GRII + G GGDRD+ KRP+MG A AD IVTDDNPR+EDP IRA ++ G P Sbjct: 375 LGRIIAIVGAGGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPALIRAAVMAGAGPEA 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R EAI ++ L D L++ GKGHE ++ Sbjct: 435 TEVGDRAEAILRGVDALGPGDALLIMGKGHERGQVI 470 >gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Rhodobacteraceae bacterium KLH11] Length = 493 Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 184/463 (39%), Positives = 263/463 (56%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L++ I ++ DSR ++ G++F A+ G + G FI A+ GA AI+ Sbjct: 8 LSELALTARGGANPDITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++V ++ R+ L+ A+ +G P+ I+AVTGT+GK+SVASFV+ Sbjct: 68 ARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI L++ +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A F+N +DH+DYH T +AYF AK LF+ +LP++ A+I D Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ + A G +L+VG +G + L Q + S GK L G FQ N Sbjct: 248 EMRRIAEARGQNILTVGPEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V + L L V GR + T S G ++VDYAHT +++ LK Sbjct: 308 VLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALK 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MGK A D AD+ VTDDNPRSEDP IR ++ Sbjct: 368 AMRPHVMGRLIAIVGAGGDRDATKRPLMGKAAADNADLVFVTDDNPRSEDPASIRTAVML 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G P E G+R EAI I+ L D L++AGKGHET IV + Sbjct: 428 GAPDATEVGDRAEAILRGIDALQPGDALLIAGKGHETGQIVGD 470 >gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ruegeria pomeroyi DSS-3] Length = 493 Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 184/471 (39%), Positives = 271/471 (57%), Gaps = 2/471 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL++ R+ I+ ++ DSR ++ G++F A+ G++ G FI A+ GA AI+ Sbjct: 8 LSQLALTARGGRDPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + + S ++VV++ R+ L+L A+ +G P ++AVTGT+GK+SV++FV+ Sbjct: 68 AEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD Sbjct: 188 EQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G VL+VG + L Q + S GK + L G FQ N Sbjct: 248 EMRAIAAARGQNVLTVGRGPCDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G V E L L V GR + T + G ++VDY+HT +++ L+ Sbjct: 308 ILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALR 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MGK A++ ADI I+TDDNPRSEDP IRA ++ Sbjct: 368 ALRPHVMGRLVAIVGAGGDRDPYKRPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQ 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G PG E G+R EAI ++ L D L++ GKGHET +V G++ + D Sbjct: 428 GAPGATEVGDRAEAILRGVDTLEPGDALLICGKGHETGQVV--GDQVLPFD 476 >gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacterales bacterium Y4I] Length = 495 Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 186/463 (40%), Positives = 268/463 (57%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR ++ G++F A+ G++ G FIP A+ +GA AI+ Sbjct: 10 LSQLGLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + S+ ++VV++ R+ L+ A+ +G P+ ++AVTGT+GK+SVA+FV+ Sbjct: 70 AAGAGIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVR 129 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 130 QIWTELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 189 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +LP E A+I +D Sbjct: 190 DQRRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGA 249 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G V+SVG + L + Q + + K + L G FQ N Sbjct: 250 EMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQAEN 309 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G D V E L L V GR + G ++VDYAHT +++ +K Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAVASAIK 369 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 370 ALRPHVLGRLIAIVGAGGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPAAIRAAVKG 429 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G PG IE G+R EAI +ML D L++ GKGHET V + Sbjct: 430 GAPGCIEIGDRAEAILRGADMLGPGDALIICGKGHETGQTVGD 472 >gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter winogradskyi Nb-255] Length = 485 Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 207/482 (42%), Positives = 280/482 (58%), Gaps = 22/482 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + E + +++DSR ++ G +F A+ G+K DG FI Sbjct: 1 MKLRELFGDD--------ATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A+ A + R P + N R+ L+L A++ Y + P I AV Sbjct: 53 DAAIASGAVAVAGDHAPA--------RGRVPFIATPNPRRALALAAAKFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG ++ S A +TTP PI L + L L+ Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGYLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+R+DG+++ A FTNL RDH+DYH T Y K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRVDGVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295 + A+I AD S V++ A V+ VG +G I L + Q+VT+ Sbjct: 225 SDGIAVICADHDCSDTVIEAAGARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D LE L GR E +G + G Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGGDVDQAFAALEHLEGARGRIERIGERN-G 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA D AD+ IV Sbjct: 344 AQVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ PG E G+R EAI TAI L D L++AGKGHET IV Sbjct: 404 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKGHETGQIV 463 Query: 476 TN 477 + Sbjct: 464 GD 465 >gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thalassiobium sp. R2A62] Length = 494 Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 179/464 (38%), Positives = 267/464 (57%), Gaps = 3/464 (0%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D + ++ L + R+ + ++ DSR ++ G++F A+ G+ G FI AI +GA Sbjct: 3 DHRKTLSDLGLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGAT 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 AI+ A + S+ +++ D+ R+ L+ A+ G P ++AVTGT+GK+SV Sbjct: 63 AILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTSV 122 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++F +QI G ++ +G T ++ TTP PI L + L+ +S GVTH ++EA Sbjct: 123 STFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAMEA 182 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGLDQ RLDG++++A FTN +DH+D+H+T +AYF AKM LF +L +S A++ D Sbjct: 183 SSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNLD 242 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLP 307 D EV + A++ G V+ VG + + L+ + + Q + EGK + L Sbjct: 243 DPKGPEVAEIAYDLGIDVIGVG-RSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNLI 301 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G FQ N L+AA L IA G D+ V + L L V GR E T G ++VDYAHT + Sbjct: 302 GGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGAAVFVDYAHTPD 361 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ L +R GR+I + G GGDRD KRP+MG+ A+ AD+ VTDDNPRSEDP Sbjct: 362 AVATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGEAAMREADLVFVTDDNPRSEDPAV 421 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IR ++ G P E G+R EAI ++ L D L++AGKGHET Sbjct: 422 IRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKGHET 465 >gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus trichosporium OB3b] Length = 483 Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 192/460 (41%), Positives = 264/460 (57%), Gaps = 28/460 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR ++ G+ F A+ G+ DG + A A+GA +V A + + Sbjct: 20 IAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVVAPRAAEV---------S 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV + R L+ A+R Y + P + AVTGTSGKSSV F++QI G + +G Sbjct: 71 LPLVVVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQIWIALGREAASLGT 130 Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I S A LTTP P+ L + L L + GVTH+++EASS G+DQ RLDG++L G+ Sbjct: 131 IGLIDKSGAHYGALTTPGPVALHQTLDELCAGGVTHLAMEASSLGIDQRRLDGVRLCVGA 190 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTN RDH+D+H+ + YF AKMRLF+ LL A+I AD A ++ V G + Sbjct: 191 FTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAERVAAVCAARGLALF 250 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 VG +G+ I L V ++T+ G+ +D PL G FQ+ NALV+AG+ IA G Sbjct: 251 DVGAKGRAIELLSVAPSALATRLTLRHAGETYDVDLPLAGGFQISNALVSAGMAIASGEA 310 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 V L L PGR E +G G ++VDYAH ++L+ +L R + GR++VVF Sbjct: 311 PGRVFAALASLRGAPGRLELIGQRD-GAPVFVDYAHKPDALDKVLATARELAKGRLVVVF 369 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----------IHGIP 437 G GGDRD+GKRP+MG+IA ADI +VTDDNPRSE+P IRA I IH Sbjct: 370 GAGGDRDKGKRPLMGEIAARAADIVVVTDDNPRSEEPAMIRAAIVAAARAAGSAQIH--- 426 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E G+R AI TAI L D L+VAGKGHE+ I+ + Sbjct: 427 ---EIGDRRAAIETAISWLRDGDALIVAGKGHESGQIIGD 463 >gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Octadecabacter antarcticus 307] Length = 503 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 183/457 (40%), Positives = 259/457 (56%), Gaps = 7/457 (1%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 RE I +S DSR ++ G +F A+ G K G FI A+ GA AI+ + + + Sbjct: 23 REATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTDAQGAQIAANEL 82 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S +++ ++ R L+L AS +G HPE ++AVTGT+GK+SV++F +QI L++ Sbjct: 83 AESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMNLAAV 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T ++ + TTP PI L + L++ S +THV+VEASSHGLDQ RLDG+ L Sbjct: 143 NLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHGLDQRRLDGVVLS 202 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTN DH+DYH+T +AYF+AKM LF LLP++ A+I DD EV++ A N G Sbjct: 203 AAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPKGPEVVQIAQNRGL 262 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++VG + + L Q++ + L G FQ N L+A L IA Sbjct: 263 ETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQADNVLLATALVIA 322 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G D V + L L V GR + T GG ++VDYAHT +++ L +R G++ Sbjct: 323 AGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATALMAMRPHVMGKL 382 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438 I + G GGDRD GKRP+MG+ A AD+ VTDDNPRSEDP IRA ++ G Sbjct: 383 IAIVGAGGDRDTGKRPLMGQAAAQNADMVFVTDDNPRSEDPATIRAAVMVGALENAAGKS 442 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 IE G+R EAI ++ L D L++AGKGHE+ I+ Sbjct: 443 VIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQII 479 >gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Granulibacter bethesdensis CGDNIH1] Length = 539 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 194/444 (43%), Positives = 261/444 (58%), Gaps = 9/444 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++DSR + GW+F A+ G K DG FI A+ +GA AI+ + + Sbjct: 75 ISGITADSRQVMPGWVFAALPGQKTDGRRFIADAVERGAAAILAPAGTAWPPGV----PP 130 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ R+ L+L A+RL G P I A+TGT+GK+S A F++QI G S+ +G Sbjct: 131 RPMIQDAEPRRLLALMAARLAGAQPHTIAAITGTNGKTSTADFLRQIWTLLGRSAASLGT 190 Query: 150 TSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I+ F + LTTP P+ LA+ L+ L+ G+ H ++EASSHGLDQ RLDG++L A + Sbjct: 191 LGLIAEGFHPQDSLTTPDPVTLAQTLAMLARAGIQHTALEASSHGLDQFRLDGVRLSAAA 250 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAGCR 266 FTNL RDH+DYH T+ AY AK+RLF +LLP +PAI D + E ++ A G R Sbjct: 251 FTNLTRDHLDYHGTEAAYRTAKLRLFADLLPAGAPAIASPTLDQITLEALRGIARRRGLR 310 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ G + L + Q +TI EG PLPG FQ N + AA + ++G Sbjct: 311 LIIAGSPDSPLPLLAIEPHAGGQYLTIREEGTTHRINVPLPGRFQADNIITAATIAASLG 370 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + L L +L V GR E T G IYVDYAHT ++LE +L +R TSG++ V Sbjct: 371 KRGIVPL--LSRLTGVRGRMEQAATLPNGAAIYVDYAHTPDALERLLDALRPHTSGKLHV 428 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFG GGDRD GKRP+MG+ A AD IVTDDNPRSE+P KIRA I+ P E G+R Sbjct: 429 VFGAGGDRDPGKRPLMGEAARTHADRLIVTDDNPRSENPAKIRAAILAACPDAEEIGDRA 488 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470 EAI AI L DVL +AGKGHE Sbjct: 489 EAIAHAIRSLQPGDVLAIAGKGHE 512 >gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisB5] Length = 490 Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 215/484 (44%), Positives = 283/484 (58%), Gaps = 21/484 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL D P + Q S P + + ++ DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLRDLFSDDAP-IDAQGS--PRGAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFI 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A AI + D + P + + N R+ L+L A+R Y + P I AV Sbjct: 58 -------AAAIAAGAVAVAGDHAPDGELAVPFVPLGNPRRALALAAARFYSRQPRTIAAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176 TGTSGK+SVA+F + I QR G ++ IG T T S + LTTP PI L ++L Sbjct: 111 TGTSGKTSVAAFTRHIWQRLGHAAASIGTIGLVTPTRSVYGS---LTTPDPIALHRSLDE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH Y NAK+RLF + Sbjct: 168 IAGEGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRD 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293 L+ A+I AD S +V+ A G R+++VG G + I L + Q++TI Sbjct: 228 LVIDGGAAVISADHDCSAQVIDAARARGLRLITVGRNGDAGEGIRLIEASIDGFAQKLTI 287 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ PL GEFQ+ NALVAAGL I G D A L+ L PGR +FVG Sbjct: 288 EHAGRRTAVHLPLVGEFQIENALVAAGLVIGAGGDPAAAFAALDHLEGAPGRLDFVG-ER 346 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG ++VDYAH ++L L+ +R +++VVFG GGDRD GKRP+MG IA AD Sbjct: 347 RGAPVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAGNADSI 406 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 IVTDDNPRSEDP IRA I+ PG E G+R EAIRTAI L D L++AGKGHET Sbjct: 407 IVTDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKGHETGQ 466 Query: 474 IVTN 477 IV + Sbjct: 467 IVRD 470 >gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 455 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 203/433 (46%), Positives = 275/433 (63%), Gaps = 9/433 (2%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ G K DG + A A GA A++ + + S PIL R+ L+L Sbjct: 2 LFAALSGTKADGMAYAKAAEAAGAVAVLAGETANAEGLS------LPILRAAEPRRALAL 55 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-- 162 A+R Y P+ I AVTGT+GK+SVA+F++QI +G + +G I++ A + L Sbjct: 56 LAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITN-AGERPLSH 114 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP P+ L KAL+ L+++GVTH+++EASSHGLDQHRLDG++ AG+FTN+ RDH+DYH T Sbjct: 115 TTPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDGVRFSAGAFTNITRDHLDYHPT 174 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + YFNAKMRLF +LLP +PAII AD ++ +V+ A V++VG +G + LK V Sbjct: 175 FEDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKLDVMTVGERGAALCLKGV 234 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 +Q+++I G+ F L PL G FQV NALV+AGL + +G + V E LE L Sbjct: 235 ERDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGA 294 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GR ++VG S G I+VDYAHT ++L L+ +R +GR+ VV GCGGDRD+GKRP M Sbjct: 295 KGRLDYVGETSAGAPIFVDYAHTPDALVKALEALRPYVTGRLHVVLGCGGDRDRGKRPEM 354 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 G+ A ADI VTDDNPRSE+P IRA I+ PG E R +AI AI L + D+L Sbjct: 355 GRAATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAIGNLERGDLL 414 Query: 463 VVAGKGHETVHIV 475 +VAGKGHET IV Sbjct: 415 LVAGKGHETGQIV 427 >gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter sp. Nb-311A] Length = 485 Score = 329 bits (843), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 214/482 (44%), Positives = 284/482 (58%), Gaps = 22/482 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + E + +++DSR ++ G +F A+ G K DG FI Sbjct: 1 MKLRELFGDD--------AAMDAPGGELAVTGLAADSRAVKLGDLFFALAGTKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA AIV A AT R P + N R+ L+L A+R Y + P I AV Sbjct: 53 DAAIASGAVAIVGEHA------PATGR--VPFIATPNPRRALALAAARFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG ++ S +TTP PI L + L L+ Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVTPSRTVYGSVTTPDPIELHRELDQLAG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+RLDG+++ A FTNL RDH+DYH T Y + K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKV-CAIHN-KQQVTISV 295 + A+I D S V++ A+ RV+ VG + G ++ V AI + Q+VT+ Sbjct: 225 PDGIAVISTDHDCSHTVIEAANARKVRVMRVGRRSDGALAGIRLVEAAIEDFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D V LE L GR E VG ++ G Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGSDPDQVFAALEHLEGARGRLELVGEHN-G 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VDYAH ++L L +R +++VVFG GGDRD GKRP+MG IA D AD+ IV Sbjct: 344 APVFVDYAHKPDALAKALLALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IRA I+ G E G+R EAIR AI L D L++AGKGHET IV Sbjct: 404 TDDNPRSEDPAAIRAAILAAARGACEIGDRAEAIRGAIAGLQPGDALLIAGKGHETGQIV 463 Query: 476 TN 477 + Sbjct: 464 GD 465 >gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola granulosus HTCC2516] Length = 498 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 183/464 (39%), Positives = 269/464 (57%), Gaps = 1/464 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++ L + RE +I ++ DSR + G +F A+ G++ G FI A+AQ A AI+ Sbjct: 13 LSTLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTD 72 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + ++ +++ ++ R+ L+ A+ +G+HP ++AVTGT+GK+SV++F + Sbjct: 73 AEGARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTR 132 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T +++ R TTP PI L + L+ + QGVTHV++EASSHGL Sbjct: 133 QIWYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGL 192 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG+ L AG FTN +DH+DYH++ +AYF+AKM LF +L + A++ DD Sbjct: 193 DQRRLDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGP 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V + A G V+ VG + + L Q++ +G+ L G FQ Sbjct: 253 LVAQIAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAE 312 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL I G D A V L L V GR + T G ++VDYAHT +++ + Sbjct: 313 NVLLAAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAV 372 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R GRI+ + G GGDRD+ KRP+MG+ A + AD IVTDDNPRSEDP IRAE++ Sbjct: 373 EALRPHVIGRIVAIVGAGGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPATIRAEVL 432 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G PG E G+R EAI +ML D L++ GKGHET IV + Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICGKGHETGQIVGD 476 >gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parvularcula bermudensis HTCC2503] Length = 480 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 196/482 (40%), Positives = 278/482 (57%), Gaps = 30/482 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DLI D + +I +++DSR ++ G++F A+ G DG +I Sbjct: 1 MRLSDLIPLD-------------GHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYI 47 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QAIA GA AI+ + + + P+L DN R+ L++ A+R + P+ I+ V Sbjct: 48 DQAIAAGAAAILAPTGTT---------ATVPVLADDNPRQALAMLAARFHAGQPKCIVGV 98 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLS 178 TGT+GK+SVA FV Q+ G S+ +G T S+ D L TTP P+ L + +S ++ Sbjct: 99 TGTNGKTSVARFVAQLWSAFGHSAGTVG-TLGASAPGYDYALRHTTPDPVELHQVISTMA 157 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + G TH+++E SSHGL QHR DG++ FTN+ +DH+DYH + +AYF AKMRL LL Sbjct: 158 AMGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALL 217 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EG 297 P+ A+I D A ++ ++ A AG RVL+VG +G+ + L +T+SV EG Sbjct: 218 PETGQAVITTDGAGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEG 277 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L G+FQ NALVAAGL IA G + V+E + KL PGR + G S G Sbjct: 278 PAQSVALSLIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGG 337 Query: 358 I---YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +VDYAHT +++ L+ I+ + GR++VV G GGDRD+ KRP+MG+ A AD+ Sbjct: 338 MASAFVDYAHTPDAIATALRAIKPHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLV 397 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 IVTDDNPRSEDP IR+++ G PG G R AIR E L DVL+V GKGHE Sbjct: 398 IVTDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQ 457 Query: 474 IV 475 + Sbjct: 458 TI 459 >gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acetobacter pomorum DM001] Length = 489 Score = 326 bits (836), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 193/474 (40%), Positives = 271/474 (57%), Gaps = 16/474 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ +++DSR ++ G +F A+ G K DG FI A+ GA A++ + T Sbjct: 22 EISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWP----TDVP 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++ N R L+L A+ L G P++++A+TGT+GK+S A F++QI G + IG Sbjct: 78 ACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQGFKAAAIG 137 Query: 149 ------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 T SF LTTP P+ LA L+ L+ G HV++EASSHGL+Q RLDG+ Sbjct: 138 TLGLTGAEETSISFPA---LTTPDPVALANGLAALTQAGFQHVALEASSHGLEQGRLDGL 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS-KEVMKRA 260 L A FTNL RDH+DYH T +AY AK++LF+ LLP+ + A AD DA + + + A Sbjct: 195 HLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQAICAIA 254 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+ VG G + L A+ Q++TI +G+ L P+PG FQ N L+A Sbjct: 255 ARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNVLLAVA 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L + +L L L V GR E G YVDYAHT ++L +L ++R Sbjct: 315 LAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLASLRPHA 374 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 G++IVV G GGDRD GKRP+MG+ A+ ADIAI+TDDNPR+E+P IRA+I G P + Sbjct: 375 RGKLIVVLGAGGDRDSGKRPLMGQEAVKGADIAIITDDNPRTENPASIRADIKTGAPQAL 434 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E +R +AI A+ ML DVLVVAGKGHE I+ N D ++R + G Sbjct: 435 EIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGNTILPFD-DAAVLRTLAG 487 >gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodobacter sphaeroides KD131] Length = 495 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%) Query: 10 DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A G Sbjct: 3 DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI+ +A + A S ++V ++ R+ L+ A+ +G+ P ++AVTGT+GK+ Sbjct: 63 ATAILTDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SVA+F +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++ Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD E+ A RV+ G+ + L Q + S +G+ PL Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G FQ +N VAA L I G V +L V GR + T G ++VDYAHT Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR I+ P E G+R EAI ++ L D L++AGKGHE+ +V Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471 >gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. TM1035] Length = 493 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 180/464 (38%), Positives = 264/464 (56%), Gaps = 7/464 (1%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV--SS 75 L + R+ I ++ DSR ++ G++F A+ G G FI A+ QGA AI+ + Sbjct: 10 LGLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAILTDATG 69 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 A QDF + S+ ++V ++ R+ L+ A+ +G PE ++AVTGT+GK+SVA+F +Q Sbjct: 70 ARLAQDFLSL--SDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVATFTRQ 127 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 I +R GL++ +G T +++ TTP PI L + L+ GVTH ++EASSHGL Sbjct: 128 IWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASSHGLA 187 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q RLDG+ L+A FTN +DH+DYH + YF AK LF +LP++ A+I DD E Sbjct: 188 QRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDPRGAE 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVY 313 + A G +++VG + L+ + + + E +D L G FQ Sbjct: 248 MAAIATERGQDLITVG-RAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGFQAE 306 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+AAGL I G D+ V E L + V GR + T G ++VDYAHT +++ + Sbjct: 307 NVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGAAVFVDYAHTPDAVATAI 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR+I + G GGDRD+ KRP+MG+ A AD IVTDDNPRSE+P IRA ++ Sbjct: 367 KALRPHVMGRLIAIVGAGGDRDRAKRPLMGQAAAAHADRVIVTDDNPRSENPASIRAAVM 426 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G P + G+R EAI ++ L D L++ GKGHET IV + Sbjct: 427 QGCPKATDVGDRAEAILRGVDALGPGDALLICGKGHETGQIVGD 470 >gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides 2.4.1] Length = 495 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%) Query: 10 DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A G Sbjct: 3 DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI+ +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+ Sbjct: 63 ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SVA+F +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++ Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD E+ A RV+ G+ + L Q + S +G+ PL Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G FQ +N VAA L I G V +L V GR + T G ++VDYAHT Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR I+ P E G+R EAI ++ L D L++AGKGHE+ +V Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471 >gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 493 Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 180/471 (38%), Positives = 265/471 (56%), Gaps = 2/471 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL++ + +I ++ DSR ++ G++F A+ G + G FI A+ GA AI+ Sbjct: 8 LSQLALTARGGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTD 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + S+ ++VV + R+ L+ A+ +G P ++AVTGT+GK+S+++FV+ Sbjct: 68 AEGARIAADELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVR 127 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + +G T ++ TTP PI L + L+ + GVTH ++EASSHGL Sbjct: 128 QIWTELGHMAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L A F+N +DH+DYH T +AYF AK LF+ +L ++ A+I DD Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGA 247 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A G VL+VG + L Q + + GK F L G FQ N Sbjct: 248 AIRDIAQARGQTVLTVGSGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAEN 307 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A GL IA G ++ V + L L V GR + T S G ++VDYAHT +++ L+ Sbjct: 308 VLLACGLVIASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALQ 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I + G GGDRD KRP+MG+ A + ADI VTDDNPRSEDP IRA ++ Sbjct: 368 ALRPHVMGRLIAIVGAGGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAVMA 427 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G P E +R EAI I+ L D L++AGKGHET IV G++ + D Sbjct: 428 GAPDATEVADRAEAILRGIDALQPGDALLIAGKGHETGQIV--GDQVLPFD 476 >gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides WS8N] Length = 495 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%) Query: 10 DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A G Sbjct: 3 DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI+ +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+ Sbjct: 63 ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SVA+F +QI G ++ IG T +FA + TTP PI L + L+ + GVTH ++ Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAM 182 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD E+ A RV+ G+ + L Q + S +G+ PL Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G FQ +N VAA L I G V +L V GR + T G ++VDYAHT Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L LK +R GRI+VVFG GGDRD+GKRP+MG+ A D AD+ VTDDNPR+EDP Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPA 422 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR I+ P E G+R EAI ++ L D L++AGKGHE+ +V Sbjct: 423 AIRRAILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471 >gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodobacter sphaeroides ATCC 17029] Length = 495 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 184/469 (39%), Positives = 265/469 (56%), Gaps = 3/469 (0%) Query: 10 DFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D ++ L + P R + + ++ DSR ++ G +F A+ G++ G F+P A+A G Sbjct: 3 DRAATLSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI+ +A + A S +++ ++ R+ L+ A+ +G+ P ++AVTGT+GK+ Sbjct: 63 ATAILTDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 SVA+F +QI G ++ IG T +FA + TTP PI L + LS + GVTH ++ Sbjct: 123 SVATFTRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAM 182 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSHGL+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP E A++ Sbjct: 183 EASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVN 242 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD E+ A RV+ G+ + L Q + S +G+ PL Sbjct: 243 LDDPRGPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPL 302 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G FQ +N VAA L I G V +L V GR + T G ++VDYAHT Sbjct: 303 IGGFQAWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTP 362 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L LK +R GRI+VVFG GGDRD+GKRP+MG+ A + AD+ VTDDNPR+EDP Sbjct: 363 DALATALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTEDPA 422 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 IR I+ P E G+R EAI ++ L D L++AGKGHE+ +V Sbjct: 423 AIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVV 471 >gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingomonas wittichii RW1] Length = 487 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 195/496 (39%), Positives = 282/496 (56%), Gaps = 17/496 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L DL+ FP + +I + D R + G +F A G++ +G FI Sbjct: 1 MRLTDLL-AGFPATTGA------DAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+A GA AIV + ++ + +V D R+ + A+R + P+ +AV Sbjct: 54 AQAVADGAAAIVSAPGVAV----GSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S +Q+ + +G + IG ++ Q LTTP + ++ L Sbjct: 110 TGTNGKTSTVELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRK 169 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH T +AYF AK+RLF E++ Sbjct: 170 EGVTHAAFEASSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVD 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ A+++ADD S EV+ G R+LSVG G+ I L + Q + + +EGK Sbjct: 230 QDGAAVVWADDPRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKA 289 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G +Q NALVAAGL +A G + L L +L+++ V GR E + G IY Sbjct: 290 REVKLPLIGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIY 349 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + LE ++ +R T R+I VFG GGDRD GKRP+MG+++ L+D IVTDDN Sbjct: 350 VDYAHTPDGLEAAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDN 409 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PRSEDP IR +++ G G IE G R EAI AI D++++AGKGHE IV G+ Sbjct: 410 PRSEDPAAIRRDVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGD 469 Query: 480 KKMSV----DCDIIRE 491 +M V D + RE Sbjct: 470 -QMRVLPFDDVTVARE 484 >gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp. 4-46] Length = 488 Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 203/471 (43%), Positives = 278/471 (59%), Gaps = 17/471 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 FPE S P + +++DSR + G +FVA+ G + DG LF QA A GA A Sbjct: 11 FPEAAGAASALP-------VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVA 63 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V A + L V + R+ L+L A+RL+ P ++AVTGTSGKSSVA Sbjct: 64 MVAEGPRP-----ADLPQAVAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGKSSVA 118 Query: 131 SFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 FV+QI R G S +G ++ A LTTP P+ L + L L+ G+T +++EA Sbjct: 119 DFVRQILARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDLAMEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHG++Q RLDG++L A +FTNLG DH+DYH+T +AY AK+RLFE+LLP+ + AI+ AD Sbjct: 179 SSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNAD 238 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + +++ G G+ + L V Q++T++ +G+ PL G Sbjct: 239 GPMADRAVAAIRARSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLPLVGS 298 Query: 310 FQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 +QV NALVAA L +A V+ L L VPGR E V T+ RG VDYAH Sbjct: 299 YQVENALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLERVATH-RGALCVVDYAHKP 357 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L +L+ +R +GR++ V GCGGDRD+ KRP+MG+IA+ AD IVTDDNPRSE+P Sbjct: 358 EALAGVLQALRPFATGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRSEEPA 417 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IRAEI+ PG E G+R EAIR A+ L DVLVVAGKGHET I+ + Sbjct: 418 AIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKGHETGQIIGD 468 >gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Silicibacter sp. TrichCH4B] Length = 494 Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 177/457 (38%), Positives = 262/457 (57%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR +Q G++F A+ G++ G F+ Q + QGA AI+ Sbjct: 9 LSQLGLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + A R+ ++V ++ R+ LS A+ +G P + AVTGT+GK+SV++F++ Sbjct: 69 TAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 129 MIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +L ++ A+I D Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A G +++VG I L + Q + + + F L G FQ N Sbjct: 249 KMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVAAGL IA G D V + L L V GR E T G ++VDYAHT +++ +K Sbjct: 309 VLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGATVFVDYAHTPDAIATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG+ A + AD IVTDDNPRSEDP IRA ++ Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGQAAHENADTVIVTDDNPRSEDPAAIRAAVMG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P + G+R EAI ++ML D L++ GKGHE+ Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEPGDALLICGKGHES 465 >gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter hansenii ATCC 23769] Length = 491 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 191/472 (40%), Positives = 264/472 (55%), Gaps = 14/472 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +++DSR ++ IF AI GN+ DG FI QA+ QGA AI+ S D A +R Sbjct: 22 EVSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAII-----STPDACAAVRQ 76 Query: 89 ---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + D+ R LS+ A+ L P +++AVTGT+GK+S FV+QI Q G ++ Sbjct: 77 AGHDIACIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAAA 136 Query: 146 QIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG IS LTTP + +A L L GV +++EASSHGL Q RLDG+ Sbjct: 137 SIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRLDGV 196 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-A 260 L A F+NL RDH+DYH +Y AK+RLF+ LLP A+ AD + + E ++ A Sbjct: 197 PLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAIA 256 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + VG G I L +V + Q + + G + LPG +QV N L+AAG Sbjct: 257 VKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVECNGTRHEVATRLPGRYQVDNMLLAAG 316 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L + + + L L V GR E T G +YVDYAHT ++LE +L ++R Sbjct: 317 LAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNGAAVYVDYAHTPDALERLLLSLRPHA 376 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 SGR++ VFG GGDRD+GKRP+MG +A LAD+AIVTDDNPR+ED IR E++ G P Sbjct: 377 SGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMAIVTDDNPRTEDAAAIRREVMAGAPDAS 436 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G R +AI + L DV+VVAGKGHE V D +IRE+ Sbjct: 437 DIGGRRQAIAEGLSRLKAGDVMVVAGKGHEQGQTVGTTVLPFD-DVSVIREL 487 >gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HTCC2255] Length = 498 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 179/451 (39%), Positives = 256/451 (56%), Gaps = 6/451 (1%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---AYSLQDFSATI 86 I + DSR I++G +FVA+ G+K G F+ A+ A A++ ++ + F+ Sbjct: 28 ITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDEDGFNFAKKIFT--- 84 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + PI+V ++ R LS +R +G P ++AVTGT+GK+SVA+F +QI + G + Sbjct: 85 KIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANFTRQIWECLGKKAVN 144 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 IG + + + TTP P L K L + + GVTH S+EASSHGLDQ RLDG+ L A Sbjct: 145 IGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSHGLDQKRLDGVYLTA 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTN DH+DYH+T AYFN+K+ LFE +L E +I DD + + A G Sbjct: 205 AAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPKGLYIYEVAKLRGQD 264 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +++VG + LK QQ+ S + L G FQ N L AA L IA G Sbjct: 265 IITVGKNNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQAMNILQAAALVIACG 324 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 V + L +L V GR + S G ++VDYAHT +++E LK +R GR+++ Sbjct: 325 EQPNDVFDTLSELRTVSGRMQLAAKRSNGASVFVDYAHTPDAVETALKAMRPHVMGRLLI 384 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 + G GGDRD+ KR ++G+ A AD+ VTDDNPRSEDP+ IR I+ G P IE G+R Sbjct: 385 IVGAGGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSILLGCPDAIEIGDRA 444 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AI T ++ L D L++AGKGHET I+ N Sbjct: 445 RAILTGVDALKPGDALLIAGKGHETGQIIGN 475 >gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Azospirillum sp. B510] Length = 499 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 184/449 (40%), Positives = 263/449 (58%), Gaps = 14/449 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR ++ G++F A+ G K DG FI A+A+GA A++ L S Sbjct: 30 IAGLTADSRAVRPGFVFAALPGVKADGRAFIADALAKGAVAVLAPEGTELPAGS------ 83 Query: 90 TPILVVDNTRK--FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +L+ D + F + A+ G+ PE ++AVTGT+GK+S F QI R GL + + Sbjct: 84 TALLLTDPQPRLAFARMAAAFHGGRQPETVVAVTGTNGKTSTVQFAAQIWARMGLPAGSL 143 Query: 148 GPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + +TTP P+ L + L+ G+ H+++EASSHGL+Q RLDG+ + A Sbjct: 144 GTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHLAMEASSHGLEQFRLDGVAIKA 203 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL DH+DYH T +AY +AK LF+ +LP A++ AD G R Sbjct: 204 AGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAVLNADSDDFHFFATICDERGQR 263 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VLS G G + + V + + Q+++++V G+D PL G FQ +N L A GL I G Sbjct: 264 VLSYGLAGAELRVTGVEPLAHGQRLSLTVLGRDVTVDLPLAGRFQAWNVLCALGLVIGSG 323 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D+ L L L VPGR + V T+ G +YVD+AHT ++LE +L +R+ + ++ Sbjct: 324 GDATRALATLPALEGVPGRLQHVATHPNGATVYVDFAHTPDALETVLLALRSHAARDLVT 383 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----E 441 VFGCGGDRD+ KRP+MG +A LAD AIVTDDNPR+EDP +R+E++ G G + E Sbjct: 384 VFGCGGDRDRTKRPVMGALAARLADRAIVTDDNPRTEDPAFVRSEVLAGATGELAGRLEE 443 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+R EAIRTA+ L DVLV+AGKGHE Sbjct: 444 IGDRAEAIRTAVRRLQPGDVLVIAGKGHE 472 >gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrobacter hamburgensis X14] Length = 485 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 202/482 (41%), Positives = 279/482 (57%), Gaps = 22/482 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L D + + E + ++ DSR ++ G +F A+ G K DG F Sbjct: 1 MKLRELFGDD--------AAMDARTGELAVTGLAVDSREVKPGDLFFALAGTKTDGARF- 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +A + + A ++ A + P + N R+ L+L A++ Y + P I AV Sbjct: 52 -------IDAAIAAGAVAVVGDHAPAGACVPSVATSNPRRALALAAAKFYPRQPATIAAV 104 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR G S IG ++ S A +TTP PI L + L L Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVAPSRAVYGSVTTPDPISLHRELDQLVG 164 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH+++EASSHGLDQ+RLDG+++ A FTNL RDH+DYH T Y + K+RLF +L+ Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISV 295 + A+I AD S V++ A R++ VG +G H L Q+VT+ Sbjct: 225 PDGVAVISADHDCSGTVIEAASARNVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEH 284 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G++ PL GEFQ+ NALV+AGL I G D+ V LE L GR E VG + G Sbjct: 285 AGRERIIRLPLVGEFQIENALVSAGLVIGTGGDADQVFAALEHLEGAKGRLELVGERN-G 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VDYAH ++L L+ +R S +++VVFG GGDRD GKRP+MG++A AD+ IV Sbjct: 344 APVFVDYAHKPDALAKALQALRPYASRKLVVVFGAGGDRDAGKRPLMGEVAAANADVVIV 403 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSE+P IRA I+ G E G+R EAIRTAI L D L++AGKGHET IV Sbjct: 404 TDDNPRSENPAAIRAAILAAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKGHETGQIV 463 Query: 476 TN 477 + Sbjct: 464 GD 465 >gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. SK209-2-6] Length = 499 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 184/467 (39%), Positives = 270/467 (57%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +D +++L + + I+ +S DSR G +F A+ G++ G FIP A+ +GA Sbjct: 8 QDLSRPLSELGLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGA 67 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 AI+ + + S+ +++V++ R+ L+ A+ +G PE ++AVTGT+GK+S Sbjct: 68 TAILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTS 127 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 VASFV+QI G + +G T +++ TTP PI L +AL+ ++ GVTH ++E Sbjct: 128 VASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAME 187 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSHGLDQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +LP+E A+I Sbjct: 188 ASSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINM 247 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +D E+ A G VL+VG + L + Q + + + F + L G Sbjct: 248 NDPRGAEMRAIAAARGQEVLTVGRGLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIG 307 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ N L+A GL IA G D V L L V GR E T G ++VDYAHT ++ Sbjct: 308 GFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGASVFVDYAHTPDA 367 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +K +R GR++ + G GGDRD GKRP+MG+ A + AD+ IVTDDNPR+EDP I Sbjct: 368 VATAIKALRPHVLGRLLAIVGAGGDRDAGKRPLMGQAAAENADLVIVTDDNPRTEDPAAI 427 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RA + G P +E G+R EAI +++L D L++ GKGHE+ IV Sbjct: 428 RAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICGKGHESGQIV 474 >gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. R11] Length = 494 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 186/462 (40%), Positives = 268/462 (58%), Gaps = 2/462 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +A + Q + +R +T ++VV++ R+ L+ ++ +G PE ++AVTGT+GK+SVASFV Sbjct: 69 AAGA-QIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFV 127 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +QI G + +G T +++ TTP P+ L AL+ ++ GVTH ++EASSHG Sbjct: 128 RQIWIELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHG 187 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 LDQ RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP++ A+I DD Sbjct: 188 LDQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 E+ A G V+SVG + L + Q + + K + L G FQ Sbjct: 248 PEMRAIAAARGQEVISVGRGAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAE 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A GL IA G D V E L L V GR + T G ++VDYAHT +++ + Sbjct: 308 NILLACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAI 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAVIRAAVK 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G PG +E G+R EAI ++ L D L++ GKGHET IV Sbjct: 428 GGAPGALEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469 >gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodopseudomonas palustris BisA53] Length = 485 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 209/481 (43%), Positives = 281/481 (58%), Gaps = 20/481 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+DL D ++ + +I ++ DSR ++ G +F A+ G K DG FI Sbjct: 1 MRLRDLFSDD--------TVMTTEAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+AI + D T ++ VDN R+ L+L AS+ Y + P I AV Sbjct: 53 -------AQAIAAGAVAVAGDHLPTDEQGVALVRVDNPRRALALAASKFYPRQPATIAAV 105 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVA+F +QI QR GL+S IG I+ + LTTP PI L + + ++S Sbjct: 106 TGTSGKTSVAAFTRQIWQRQGLASASIGTIGLIAPQRSVYGSLTTPDPIALHRMVDEIAS 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + VTH+++EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T Y AK+RLF +L+ Sbjct: 166 EDVTHLALEASSHGLDQYRLDGVRIAAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVA 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296 A+I AD S EV+ A R+++VG G I L+ Q++ + + Sbjct: 226 PSGAAVISADHDCSAEVVAAARARKLRLITVGRNGDPGAGIKLRSASIDGFAQRLILEHQ 285 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + L PL GEFQ+ NALVAAGL I G D+ V E L +L GR E VG + G Sbjct: 286 GRMQNLLLPLVGEFQIENALVAAGLAIGTGSDADSVFEALTQLEGAKGRLELVGERN-GA 344 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I+VDYAH ++L L+ +R ++IVVFG GGDRD GKRP+MG IA AD IVT Sbjct: 345 PIFVDYAHKPDALAKALQALRPYAKRQLIVVFGAGGDRDAGKRPLMGAIAAQQADRVIVT 404 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 DDNPRSE+ IRA I+ G E G+R EAIR AI L D L++AGKGHET IV Sbjct: 405 DDNPRSENAAAIRAAILAAAMGADEIGDRAEAIRAAIAALQPGDALLIAGKGHETGQIVG 464 Query: 477 N 477 + Sbjct: 465 D 465 >gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 486 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 187/448 (41%), Positives = 260/448 (58%), Gaps = 15/448 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G++F A G K +G FI +AIA GA AIV ++ LV Sbjct: 32 DSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +N R + A+R Y P + AVTGT+GK+SVA +Q +G + IG I++ Sbjct: 84 ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMIAGHKAASIGTLGVITA 143 Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +N +TTP + S L+ ++HV EASSHGLDQ+R DG K+IAG+FT+ Sbjct: 144 ---ENSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTS 200 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 RDH+DYH T + Y AK+RLF+E + + A+++ADD +K V+ G +++ +G Sbjct: 201 FSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTVIAHVQKRGLKLIDIG 260 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + I L A Q +T+S++G+ + PL G +Q+ NALVAAGL +A G D Sbjct: 261 EKAEAIRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQ 320 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L L V GR E + G +YVDYAHT + L ++ +R T GR+ VVFG G Sbjct: 321 TMAALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGRLWVVFGAG 380 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 GDRD+GKRP MGKIA +LAD IVTDDNPR ED IR EI+ G P E G R EAI + Sbjct: 381 GDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEILVGAPLAEEIGGRKEAIFS 440 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGE 479 AI+ K D++++AGKGHE I+ GE Sbjct: 441 AIKRAEKGDIVLIAGKGHEQGQIIGRGE 468 >gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium BAL199] Length = 479 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 196/461 (42%), Positives = 270/461 (58%), Gaps = 8/461 (1%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ GW+F A+ G+K DG +I A+ +GA A++ + D A I P+ Sbjct: 16 MTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTP-----DSEARIGGRVPL 70 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 ++ + R+ L+ A+R Y PE ++AVTGT+GK+SVA F +QI +G S +G Sbjct: 71 VMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSASLGTLGL 130 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + LTTP PI L L L+ +GVTH ++EASSHGL Q RLDG+++ A +FTN Sbjct: 131 MVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRIKAAAFTN 190 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH + AY AK+ LFE ++ A++ D A + A G R+LS G Sbjct: 191 LTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRGHRILSYG 250 Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + G + L A + Q + + V G+ PL G+FQ +NAL A GL IA G Sbjct: 251 RRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAIATGTPDD 310 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 L +L V GR E V + G IYVDYAHT ++LE +L IR T+G++ VFGC Sbjct: 311 QATAALSRLAGVRGRMERVAVLANGAAIYVDYAHTPDALETVLNAIRPHTTGKLWCVFGC 370 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GGDRD GKRP+MG + LAD IVTDDNPRSEDP IRA + PG E G+R EAIR Sbjct: 371 GGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAACPGGEEIGDRAEAIR 430 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +A+ L DVL++AGKGHE + GE + D + RE Sbjct: 431 SAVSRLGPGDVLMIAGKGHEQGQEI-KGEIRPFDDATVARE 470 >gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodospirillum centenum SW] gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rhodospirillum centenum SW] Length = 491 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 198/452 (43%), Positives = 263/452 (58%), Gaps = 7/452 (1%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I +++DSR I G +F A+ G + DG FI QA+A GA A++ L Sbjct: 23 RDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIAQAVAAGASAVLAPKGTVLPPGCEH 82 Query: 86 IRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + L+ D N R+ L+L A+ YG P+ I AVTGT+GK+S A F +QI G S Sbjct: 83 V-----ALIEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNGKTSTAQFTRQIWSGLGHRS 137 Query: 145 FQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G ++ F LTTP P+ L + L+ L+ GVTH+++EASSHGLDQ RLDG+ Sbjct: 138 GAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARGGVTHLAMEASSHGLDQFRLDGVL 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTNL RDH+DYH+T +AYF AK LFE ++P+ + A++ AD + + + Sbjct: 198 VTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVAVLNADTPQFEALAALCRSR 257 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G +G+ + L + + QQV I V G PL G FQ++NAL A GL I Sbjct: 258 KQTVIGYGERGRELALHSARPLPHGQQVEIEVFGTRHSLELPLVGNFQLWNALCALGLVI 317 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G D A L +L V GR + V G +YVDYAHT + LE +LK +R T GR Sbjct: 318 GSGEDPAAATAQLARLEGVRGRLDLVARLKNGAAVYVDYAHTPDGLETVLKALRPHTVGR 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++ VFG GGDRD GKRP+MG++ LAD AIVTDDNPRSE P IRA I+ P E G Sbjct: 378 LVAVFGAGGDRDPGKRPLMGEVVARLADRAIVTDDNPRSEVPAVIRAAILAACPDATEIG 437 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAI AI L + DVLVV GKGHE IV Sbjct: 438 DRAEAIEAAIAGLEQGDVLVVCGKGHEQGQIV 469 >gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius nubinhibens ISM] Length = 497 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 182/469 (38%), Positives = 265/469 (56%), Gaps = 11/469 (2%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + +L + + + +S DSR + G +F A+ G G FI A+ +GA A++ Sbjct: 11 LTELGLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGAAAVLTD 70 Query: 75 S-----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 + A L D +A ++V ++ R+ LS A+ YG PE ++AVTGT+GK+SV Sbjct: 71 AEGAALARDLLDGAAVA-----LVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTSV 125 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ASF +QI G + +G T ++ TTP PI L + L+ + GVTH ++EA Sbjct: 126 ASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAMEA 185 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q RLDG++L A FTN +DH+DYH + YF+AK LF +LP++ A+I D Sbjct: 186 SSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINID 245 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPG 308 D E+ + A + G +L VG + + + + Q + EG+ + PL G Sbjct: 246 DPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLIG 305 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 FQ N L+AAGL IA G D + V + L ++ V GR E T G ++VDYAHT ++ Sbjct: 306 GFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGAAVFVDYAHTPDA 365 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + ++ +R GR+I + G GGDRD GKRP+MG+ A + AD IVTDDNPRSEDP I Sbjct: 366 VGTAIRALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSEDPALI 425 Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RA ++ G P +E G+R EAI ++ML D L++ GKGHET V + Sbjct: 426 RAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKGHETGQTVGD 474 >gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1058 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 185/445 (41%), Positives = 259/445 (58%), Gaps = 9/445 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G++F A G K +G FI +AIA GA AIV ++ LV Sbjct: 604 DSRKVEKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 655 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +N R + A+R Y P + AVTGT+GK+SVA +Q+ +G + IG I++ Sbjct: 656 ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTIAGHKAASIGTLGVITA 715 Query: 156 -FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 + +TTP + S L+ ++HV EASSHGLDQ+R DG K+IAG+FT+ R Sbjct: 716 KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 775 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH T + Y AK+RLF+E + + A+++ADD + V+ G +++ +G + Sbjct: 776 DHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIAHVQKRGLKLIDIGEKA 835 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I L A Q +T+S++G+ + PL G +Q+ NALVAAGL +A G D + Sbjct: 836 EAIRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQTMA 895 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 L L V GR E + G +YVDYAHT + L ++ +R T GR+ VVFG GGDR Sbjct: 896 ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGRLWVVFGAGGDR 955 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D+GKRP MGKIA +LAD IVTDDNPR ED IR EI+ G P E G R EAI +AI+ Sbjct: 956 DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEILVGSPLAEEIGGRKEAIFSAIK 1015 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGE 479 K D++++AGKGHE I+ GE Sbjct: 1016 RAEKGDIVLIAGKGHEQGQIIGRGE 1040 >gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidiphilium cryptum JF-5] gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Acidiphilium multivorum AIU301] gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidiphilium cryptum JF-5] gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Acidiphilium multivorum AIU301] Length = 481 Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 200/477 (41%), Positives = 272/477 (57%), Gaps = 13/477 (2%) Query: 22 PMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 P W E + +++DSR ++ G IF A+ G + DG FI QA+AQGA A++ S Sbjct: 10 PPGWILPPETVFSGITADSRAVRKGMIFAALPGARADGRDFIAQAVAQGAAAVLAPSGTR 69 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 P++ R+ L+ A+ L G PE IL VTGT+GK+S F++Q+ Sbjct: 70 WPPGV----PPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAV 125 Query: 139 RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 SG + +G I+ FA LTTP P+ L+ L+ L + G+ V++EASSHGLDQ Sbjct: 126 ASGRPAASLGTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQF 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL G++L AG F+NL RDH+DYH +Y AK+RLF++LL +PA+ AD Sbjct: 186 RLHGLRLAAGGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAA 245 Query: 258 KR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 R A + +VG G L+ + A + Q +TI+ G + PLPG FQV NA Sbjct: 246 LRDIAQARRLDLATVGAGGDLFDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNA 305 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+AAGL A G+ L + L L V GR E G YVDYAHT ++LE +L Sbjct: 306 LLAAGLARAAGVSDPL--DRLPGLAPVRGRLERAAVLPNGAAAYVDYAHTPDALERLLMA 363 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +GR+++VFG GGDRD+GKR +MG +A LAD+AIVTDDNPRSEDP IRA I+ Sbjct: 364 LRPHAAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAA 423 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 PG E G+R AI ++ L DVL VAGKGHE+ IV + D +IRE+ Sbjct: 424 CPGAREIGDRRAAIAAGLDALRAGDVLAVAGKGHESGQIVGDAVLPFD-DAAVIREL 479 >gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. NAP1] Length = 500 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 189/481 (39%), Positives = 270/481 (56%), Gaps = 34/481 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +F A G + FIP AI GA AIV S ++ + I S P Sbjct: 28 DHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAKVEG-ALHIASEEP---- 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149 R+ + A+ + PE I+AVTGT+GK+S A +QI + G + IG P Sbjct: 83 ---RRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWRMCGERAASIGTLGVTTP 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++S+ LTTP + +S L+ +GVTHV+ EASSHGL Q+R +G+++ AG+F Sbjct: 140 DGSVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLRVKAGAF 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCR 266 TN RDH+DYH+T AYF AKMRLF+E++ ++ AII+ + +++ ++ A + Sbjct: 195 TNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRAIEHALSRKLH 254 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 VL+VG +G F+ L A Q + + +G+ PL G +Q NALV+AGL IA G Sbjct: 255 VLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANALVSAGLAIATG 314 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT----ITSG 382 A V + + +L V GR E + G +Y+DYAHT ++LE + +R G Sbjct: 315 AAPAQVFDAIGRLQPVRGRLERACLTASGAPVYIDYAHTPDALEAAIAALRPHVDGEKGG 374 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439 ++IVVFG GGDRD GKR MGK+A D AD+ I+TDDNPR EDP +IRA ++ G G Sbjct: 375 KLIVVFGAGGDRDTGKRAPMGKVAADSADLVIITDDNPRGEDPGEIRAAVLEGAGGADHV 434 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGL 495 G R EAI AI + D+++VAGKGHE I+ +GE M V D ++ RE L Sbjct: 435 RAIGGRREAIAAAIGQVGAHDIILVAGKGHEQGQIIGSGE-TMRVMPFDDVEVARECAAL 493 Query: 496 I 496 + Sbjct: 494 V 494 >gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Phaeobacter gallaeciensis 2.10] Length = 494 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 184/462 (39%), Positives = 267/462 (57%), Gaps = 2/462 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +A + Q + +R +T ++VV++ R+ L+ A+ +G PE ++AVTGT+GK+SVASFV Sbjct: 69 AAGA-QIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFV 127 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +QI G + +G T S++ TTP P+ L AL+ ++ GVTH ++EASSHG Sbjct: 128 RQIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHG 187 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD Sbjct: 188 LEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ A G V+SVG + L + Q + + K + L G FQ Sbjct: 248 EQMRAVAAARGQEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAE 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A GL IA G D V + L L V GR + T G ++VDYAHT +++ + Sbjct: 308 NILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAI 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVK 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G P +E G+R EAI ++ L D L++ GKGHET IV Sbjct: 428 GGAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469 >gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bradyrhizobium sp. BTAi1] Length = 486 Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 205/455 (45%), Positives = 267/455 (58%), Gaps = 21/455 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR ++ G +F A+ G K DG FI AIA GA A+ S + Sbjct: 22 VSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAIAAGAIAVAGGS-------PPGTALS 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + + N R L++ A+R Y + P I AVTGTSGK+SVA+F +QI Q+ G SS IG Sbjct: 75 VPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQKLGHSSASIGT 134 Query: 150 TSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +S D R LTTP PI L + + ++ GVTH++ EASSHGLDQ+RLDG+++ Sbjct: 135 VGLVS----DKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAFEASSHGLDQYRLDGVRV 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 AG FTNL RDH+DYH Y NAK+RLF +L+P A+I AD S +VM A Sbjct: 191 SAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGAAVISADHECSADVMAAAQARD 250 Query: 265 CRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+++VG G I L QQ+ + G+ + PL G FQV NALVAAG Sbjct: 251 LRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRMYTIRLPLVGAFQVENALVAAG 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L I G D V E LE L GR E VG ++ G I++DYAH ++L L+ +R Sbjct: 311 LAIGTGSDPQAVFEALETLEGAKGRLELVGEHN-GAPIFIDYAHKPDALAKALQALRPYA 369 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 + +++VVFG GGDRD GKRP+MG IA AD IVTDDNPRSEDP IRA I+ PG Sbjct: 370 ARQLVVVFGAGGDRDTGKRPLMGAIAAAEADRVIVTDDNPRSEDPAAIRAAILAAAPGAR 429 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R EAI+ AI L D LV+AGKGHE I+ Sbjct: 430 EIGDRAEAIKVAIGELQPGDALVIAGKGHEVGQII 464 >gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruegeria sp. TM1040] Length = 494 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 257/457 (56%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + +I ++ DSR + G++F A+ G + G F+ Q + QGA AI+ Sbjct: 9 LSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + + A + ++V ++ R+ LS A+ +G P + AVTGT+GK+SV++F++ Sbjct: 69 AKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I G + +G T +++ TTP PI L +AL+ + GVTH ++EASSHGL Sbjct: 129 MIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ RLDG++L A FTN +DH+DYH+T +AYF AK LF +L ++ A+I D Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E+ A G +++VG I L + Q + + + F L G FQ N Sbjct: 249 EMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVAAGL IA G D V + L L V GR + T G ++VDYAHT +++ +K Sbjct: 309 VLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR++ + G GGDRD KRP+MG A D AD IVTDDNPRSEDP IRA ++ Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMG 428 Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P + G+R EAI ++ML D L++ GKGHE+ Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHES 465 >gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter gallaeciensis BS107] Length = 494 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 184/462 (39%), Positives = 267/462 (57%), Gaps = 2/462 (0%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 ++QL + + I ++ DSR + G +F A+ G++ G F P A+ GA AI+ Sbjct: 9 LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +A + Q + +R +T ++VV++ R+ L+ A+ +G PE ++AVTGT+GK+SVASFV Sbjct: 69 AAGA-QIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFV 127 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +QI G + +G T S++ TTP P+ L AL+ ++ GVTH ++EASSHG Sbjct: 128 RQIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHG 187 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L+Q RLDG+ L A FTN +DH+DYH+T +AYF AK LF +LP + A+I DD Sbjct: 188 LEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ A G V+SVG + L + Q + + K + L G FQ Sbjct: 248 EQMRAVAAARGHEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAE 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A GL IA G D V + L L V GR + T G ++VDYAHT +++ + Sbjct: 308 NILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAI 367 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R GR++ + G GGDRD KRP+MG+ A + AD+ IVTDDNPRSEDP IRA + Sbjct: 368 KALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVK 427 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G P +E G+R EAI ++ L D L++ GKGHET IV Sbjct: 428 GGAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIV 469 >gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseobacter sp. AzwK-3b] Length = 501 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/470 (37%), Positives = 256/470 (54%), Gaps = 7/470 (1%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + L + R I ++ DSR ++ G +F A+ G + G FI A+ GA AI+ Sbjct: 9 LTDLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTD 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 +A + +S+ ++V ++ R+ L+ A+ +G PE ++ VTGT+GK+SVASF + Sbjct: 69 AAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASFCR 128 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 QI G + IG T ++ TTP PI L + L+ GVTH ++EASSHGL Sbjct: 129 QIWCELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASSHGL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q RLDG+ L+A F+N +DH+DYH T YF AK LF +LP++ A+I DD Sbjct: 189 EQRRLDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDPKGP 248 Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + A G +++VG + G +H++ Q + +G+ L G FQ Sbjct: 249 AMAEIARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGFQGE 308 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N +AAGL IA G D V + L + V GR + T G ++VDYAHT +++ L Sbjct: 309 NVALAAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGAAVFVDYAHTPDAVSTAL 368 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R GR++ + G GGDRD KRP+MG A AD+ IVTDDNPRSEDP IRA ++ Sbjct: 369 SALRPHVMGRLVAIIGAGGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAAIRAAVM 428 Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ E G+R EAI ++ML D L++ GKGHET IV + Sbjct: 429 AGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICGKGHETGQIVGD 478 >gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 184/445 (41%), Positives = 257/445 (57%), Gaps = 9/445 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G++F A G K +G FI +AIA GA AIV ++ LV Sbjct: 32 DSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +N R + A+R Y P + AVTGT+GK+SVA +Q+ +G + IG I++ Sbjct: 84 ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTLGVITA 143 Query: 156 -FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 + +TTP + S L+ ++HV EASSHGLDQ+R DG K+IAG+FT+ R Sbjct: 144 KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 203 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH T + Y AK+RLF+E + + A+I+ADD + V+ G +++ +G + Sbjct: 204 DHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLKLIDIGEKA 263 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I L A Q +T+S++G+ + PL G +Q+ NALVAAGL +A G D + Sbjct: 264 EAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALVAAGLVLATGGDIKQTMA 323 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 L L V GR E + G +YVDYAHT + L ++ +R T G + VVFG GGDR Sbjct: 324 ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGLLWVVFGAGGDR 383 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D+GKRP MGKIA +LAD IVTDDNPR ED IR E++ G P E G R EAI +AI+ Sbjct: 384 DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLVGAPLAEEIGGRKEAIFSAIK 443 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGE 479 K D++++AGKGHE I+ GE Sbjct: 444 RAEKGDIVLIAGKGHEQGQIIGRGE 468 >gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Octadecabacter antarcticus 238] Length = 503 Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 181/459 (39%), Positives = 262/459 (57%), Gaps = 7/459 (1%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I +S DSR ++ G +F A+ G K G I A+ GA AI+ + + Sbjct: 23 RDATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTDAQGAQIAAKEL 82 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S+ +++ ++ R L+L AS +G HPE ++AVTGT+GK+SV++F +QI L++ Sbjct: 83 ADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFARQIWIEMELAAV 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T ++ + TTP PI L + L+ S G+THV++EASSHGLDQ RLDG+ L Sbjct: 143 NLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGLDQRRLDGVVLA 202 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTN +DH+DYH+T +AYF+AKM LF LLP++ A+I DD+ EV++ A + G Sbjct: 203 AAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGPEVVQIAESRGL 262 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++VG + + L Q++ + L G FQ N L+AA L IA Sbjct: 263 ETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQADNVLLAAALVIA 322 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G D + L L V GR + T GG ++VDYAHT +++ L +R G++ Sbjct: 323 AGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATALMAMRPHVMGKL 382 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438 I + G GGDRD GKRP+MG+ A+ AD+ VTDDNPRSEDP IRA ++ G Sbjct: 383 IAIVGAGGDRDTGKRPLMGQAAVQNADMVFVTDDNPRSEDPRVIRAAVMAGALENAAGKS 442 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IE G+R EAI I+ L D L++AGKGHE+ I+ + Sbjct: 443 VIEVGDRAEAILRGIDALGPGDALLIAGKGHESGQIIGD 481 >gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus Puniceispirillum marinum IMCC1322] Length = 502 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 186/480 (38%), Positives = 269/480 (56%), Gaps = 24/480 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ L+ P Q KI +S +SR I+ G +F A+ G+ DG ++I AI GA I+ Sbjct: 5 DLLKNLADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGARVIL 64 Query: 73 VSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 ++ A + +TPI++V+N R L+ A+R + K P I AVTGT+GK+S Sbjct: 65 TD----MRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTD 120 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNR-----------LTTPSPIYLAKALSYLSSQ 180 F++Q+ R + IG T+ D R LTTP + L ALS L Sbjct: 121 FLRQLWTRVTWQASSIG---TLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDA 177 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GVTH+++EASSHGL Q RLDG+ + +FTNL +DH+D+H ++YF AK LF +LL Sbjct: 178 GVTHLALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMH 237 Query: 241 ESPAIIYADDAYSKEV--MKRAHNAGCRVL--SVGYQGKF-IHLKKVCAIHNKQQVTISV 295 AII DD Y + + M A +++ + G+ ++K+ I N +++ Sbjct: 238 AGAAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKH 297 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +GK + + G FQ NAL A + G+ L L L PGR + V + +G Sbjct: 298 DGKSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQTVTGHPQG 357 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +I VD+AHT ++L L+ +R S ++ V+FGCGGDRD KR +MG IA D AD+ IV Sbjct: 358 AQIVVDFAHTPDALRAALEALRPEVSHKLYVLFGCGGDRDPSKRALMGAIADDAADVVIV 417 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 TDDNPRSEDP IR+ I+ P IE R AI+TA+E L + DVL++AGKGHETV ++ Sbjct: 418 TDDNPRSEDPASIRSAIMAASPKSIEIFPRDTAIKTALEQLVEGDVLLIAGKGHETVQLI 477 >gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanicola batsensis HTCC2597] Length = 497 Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 172/453 (37%), Positives = 258/453 (56%), Gaps = 1/453 (0%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I ++ DSR ++ G++F A+ G + G FI A+ QGA A++ + + Sbjct: 22 RDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGARIAERDL 81 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S+ +++ ++ R+ L+ A+ + K P + AVTGT+GK+SVASF++QI G + Sbjct: 82 AESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWMLVGREAV 141 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T S++ TTP PI L + ++ L+ G+TH ++EASSHGL Q RLDG+ L Sbjct: 142 NLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRRLDGVMLR 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G+FTNL +DH+DYH + YF+AK LF +L ++ A+I D ++ + A + G Sbjct: 202 VGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAEVAADRGL 261 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL+VG ++ + + + Q + S +G+ L G FQ N LVAAG+ I Sbjct: 262 DVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLVAAGMAIL 321 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G D V L L V GR E + G ++VDYAHT +++ LK +R GR+ Sbjct: 322 SGEDPDQVFTVLPALSTVHGRMELAARRTNGAAVFVDYAHTPDAVATALKALRPHVLGRL 381 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 + V G GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IR ++ G P E + Sbjct: 382 VAVIGAGGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAAIRQAVLLGCPDATEVAD 441 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R EAI A++ L D L++AGKGHET I+ + Sbjct: 442 RAEAILRAVDALAPGDALLIAGKGHETGQIIGD 474 >gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseovarius sp. 217] Length = 467 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 182/453 (40%), Positives = 261/453 (57%), Gaps = 7/453 (1%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRSNTPIL 93 DSR ++ G++F A+ G K G FI A+ QGA AI+ + A Q F + S+ ++ Sbjct: 2 DSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSL--SDAALV 59 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 V ++ R+ L+ A+ +G PE ++AVTGT+GK+SVA+F +QI +R G + +G T Sbjct: 60 VAEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVE 119 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 +++ TTP PI L + L+ GVTH ++EASSHGL Q RLDG+ L+A FTN Sbjct: 120 GAYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFT 179 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 +DH+DYH + YF AK LF +LP++ A+I +D+ E+ A G +++VG + Sbjct: 180 QDHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGRE 239 Query: 274 -GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G + LK Q + E + L G FQ N L+AAGL I G D+ V Sbjct: 240 VGADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERV 299 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E L + V GR + T G ++VDYAHT +++ +K +R GR+I + G GG Sbjct: 300 FETLPGMKTVRGRMQLAATRDTGATVFVDYAHTPDAVATAIKALRPHVMGRLIAIVGAGG 359 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452 DRD+ KRP+MG+ A AD+ IVTDDNPRSEDP IRA ++ G PG E G+R EAI Sbjct: 360 DRDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGDRAEAILRG 419 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ L D L++ GKGHET +V GE + D Sbjct: 420 VDALGPGDALLICGKGHETGQVV--GEDVLPFD 450 >gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2] Length = 493 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 265/472 (56%), Gaps = 21/472 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-- 72 + L + +E +I ++ DSR ++ G++F A+ G K G FI A+ GA A++ Sbjct: 8 LADLGLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVLTD 67 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V A D A S+ ++V + R+ L+ A+ +G PE ++ VTGT+GK+SVA+F Sbjct: 68 VEGAKIADDVLAG--SSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATF 125 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +QI G ++ IG T ++ + TTP PI L + L+ ++ GVTH ++EASSH Sbjct: 126 TRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSH 185 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ RLDG++L A FTN +DH+DYH T AYF AK LF +LP + A+I +D Sbjct: 186 GLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPR 245 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305 E+ A G R++SVG+ KVC + Q G+D +L+ Sbjct: 246 GAEIALLAAERGQRLISVGH-------GKVCDLQIAGQ-RFDATGQDVRYLWQGQPHQVR 297 Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G FQ N +AAGL I G + V L +L V GR + T G ++VDYA Sbjct: 298 LNLIGGFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +++ LK +R GRI+VVFG GGDRD KRP+MG+ A + AD+ VTDDNPRSE Sbjct: 358 HTPDAIATALKALRPHVMGRIVVVFGAGGDRDTTKRPLMGQAAREHADVLYVTDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DP IRA I+ P E G+R EAI ++ L D L+VAGKGHE+ ++ Sbjct: 418 DPATIRAAIMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKGHESGQVI 469 >gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium chlorophenolicum L-1] Length = 480 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 189/462 (40%), Positives = 258/462 (55%), Gaps = 14/462 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F A G + +G FIP A V + R I + Sbjct: 30 DNRKVAPGTVFGAFQGARMNGEDFIPAA---------VQAGAVAVVARPEARVEGAIHIA 80 Query: 96 -DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 DN R+ + A+R + PE +AVTGT+GK+S +Q+ + G S IG + Sbjct: 81 HDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTT 140 Query: 155 SFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 S Q LTTP + +S L +G+TH + EASSHGL Q+R +G+ + A +FTNL Sbjct: 141 SVDQVSTGLTTPDIVTFLSNMSGLKREGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLS 200 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 RDH+DYH +YF AKMRLF+ ++ + A+++ADD +S +V++RA G RVLSVG Q Sbjct: 201 RDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVWADDEWSDKVIRRATKRGLRVLSVGVQ 260 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 G+ + L Q + + VEGK + PL G +Q NAL AA L IA G D VL Sbjct: 261 GQALRLANRTPTQLGQTLEVEVEGKPYKVSLPLIGAYQAANALTAAALVIAGGEDVGKVL 320 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 E L ++ V GR E G +YVDYAHT + L ++ +R T GR+I +FG GGD Sbjct: 321 ELLGRVQPVRGRLERAVITRAGAPVYVDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGD 380 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453 RD GKRP MGK+A DLAD IVTDDNPRSE+P IRA ++ G PG E G R AI AI Sbjct: 381 RDAGKRPQMGKVAADLADHVIVTDDNPRSEEPSSIRAAVMAGAPGAEEIGGRRAAIAAAI 440 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 D++++AGKGHE I+ G++ + D + RE G Sbjct: 441 AQAGADDIVLLAGKGHEQGQII--GDRVLPFDDVTVARECAG 480 >gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 485 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 181/445 (40%), Positives = 255/445 (57%), Gaps = 10/445 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G++F A G K +G FI +AIA GA AIV ++ LV Sbjct: 32 DSRKVAKGFVFGAFPGAKVNGEDFIEKAIAAGAVAIVARPEVKIE--------GAVHLVA 83 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +N R + A+R Y P + AVTGT+GK+SVA +Q+ +G + IG I++ Sbjct: 84 ENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTITGHKAASIGTLGVITA 143 Query: 156 F-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 + +TTP + S L+ ++HV EASSHGLDQ+R DG K+IAG+FT+ R Sbjct: 144 KNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYRSDGAKVIAGAFTSFSR 203 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH T + Y AK+RLF+E + + A+I+ADD + V+ G +++ + ++ Sbjct: 204 DHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIAHVQKRGLKLIDI-WKA 262 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + I L A Q +T+S++G+ + PL G +Q+ N LV AGL +A G D + Sbjct: 263 EAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGLVRAGLVLATGGDIKQTMA 322 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 L L V GR E + G +YVDYAHT + L ++ +R T G + VVFG GGDR Sbjct: 323 ALTLLKPVRGRLERATQSQNGAEVYVDYAHTPDGLRAAIEALRPHTEGLLWVVFGAGGDR 382 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 D+GKRP MGKIA +LAD IVTDDNPR ED IR E++ G P E G R EAI +AI+ Sbjct: 383 DKGKRPEMGKIAANLADHVIVTDDNPRGEDAATIRKEVLVGAPLAEEIGGRKEAIFSAIK 442 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGE 479 K D++++AGKGHE I+ GE Sbjct: 443 RAEKGDIVLIAGKGHEQGQIIGRGE 467 >gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter diazotrophicus PAl 5] gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gluconacetobacter diazotrophicus PAl 5] gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Gluconacetobacter diazotrophicus PAl 5] gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 487 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 194/471 (41%), Positives = 262/471 (55%), Gaps = 14/471 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++DSR + G +FVAI G + DG + A + + A ++ T Sbjct: 24 ITGVTADSRRVTPGMLFVAIPGTRADG--------SAFIPAAIAAGAAAIVAPRGTPAPG 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ VD R+ L+L A+ L G P++++AVTGT+GK+S F++QI + IG Sbjct: 76 VPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTVDFLRQIWGHQHRRAASIGT 135 Query: 150 TSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 I+ + LTTP + LA L+ ++ GVT V++EASSHGLDQHRLDG++L A Sbjct: 136 LGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAIEASSHGLDQHRLDGLRLSA 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKR-AHNAG 264 FTNL RDH+DYH T AY AK+RLF+ LLP + AD D + + ++ A G Sbjct: 196 AGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAANADMDTATLDALRDIAARRG 255 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + VG G I L + Q + I+ G D + LPG FQ NAL+AA L Sbjct: 256 LDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLALPGRFQADNALLAAALAAP 315 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 A ++ L L V GR E G YVDYAHT ++L +L +R SGR+ Sbjct: 316 GADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAHTPDALARLLDALRPHASGRL 375 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 I VFG GGDRD+GKRP+MG+ A ADIAIVTDDNPR+EDP IR E++ G PG IE G+ Sbjct: 376 IAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNPRTEDPAFIRGEVLAGAPGAIEIGD 435 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 R AI + ML DVLVVAGKGHE + D +IR++ G+ Sbjct: 436 RARAIAEGLSMLRAGDVLVVAGKGHEQGQTIGTATLPFD-DASVIRDLAGV 485 >gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ketogulonicigenium vulgare Y25] Length = 503 Score = 303 bits (776), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 171/454 (37%), Positives = 251/454 (55%), Gaps = 6/454 (1%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+++ ++ DSR ++ G +F A+ G + G F+ +A+ GA AIV A + I Sbjct: 26 RRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGATAIVTDPAGAAIIGDTLIG 85 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V+ + R ++ A+ +G P + AVTGT+GK+SV SF++QI Q +G + I Sbjct: 86 QEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTSVTSFLRQIWQYAGHKAINI 145 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G T + + TTP + L + LS + GVTH ++EASSHG++Q RL+G+ L Sbjct: 146 GTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAMEASSHGIEQRRLEGVMLSVA 205 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN +DH+DYH+T AYFNAK LF LLP++ A+I DD ++ + A + G + Sbjct: 206 GFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINIDDPKGADIARVAEDRGQEI 265 Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L VG G + L Q + G+ + L G FQ N L+AAGL IA G Sbjct: 266 LGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLIGGFQAENVLLAAGLAIASG 325 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D A V L V GR + G ++VD+AHT +++E +L+ IR GR++ Sbjct: 326 DDPAHVFAAFPHLTTVRGRMQLAARRGNGASVFVDFAHTPDAIETVLQAIRPHVMGRVVA 385 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIE 441 + G GGDRD+ KRP+MG A AD+ IVTDDNPR+ED IR ++ G E Sbjct: 386 IVGAGGDRDRTKRPLMGAAAARFADMVIVTDDNPRTEDAATIRDAVMAGAVAEGGCDVRE 445 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G+R EAI ++ML D L++ GKGHE+ IV Sbjct: 446 VGDRAEAILRGVDMLEAGDALIICGKGHESGQIV 479 >gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter litoralis HTCC2594] gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis HTCC2594] Length = 495 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 183/473 (38%), Positives = 270/473 (57%), Gaps = 26/473 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +F A G+ +G +I QA+A GA A+V +++ + I +TP Sbjct: 28 DHRKVAPGTVFGAFQGSAVNGEDYISQAVAAGAVAVVAQPEATVEG-AVHIAEDTP---- 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149 R+ +L A++ + P+ I+AVTGT+GK+S +Q+ + +G + IG P Sbjct: 83 ---RRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVEMTRQLWRMAGERAASIGTLGVTTP 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++S+ LTTP + +S L+ +GVTHV+ EASSHGL Q+R +G+ + A +F Sbjct: 140 DESVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGLPVAAAAF 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVL 268 TN RDH+DYH T YF AKMRLF+E++ A+++ ++ ++ + ++RA R+ Sbjct: 195 TNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGNSEWTAQAIERARQRELRLF 254 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +VG QG+ I L+ Q++ I G+ PL GE+QV NAL AAGL IA G D Sbjct: 255 TVGEQGEDIRLRARTPTQLGQELEIEHAGETRKLRLPLIGEYQVANALTAAGLAIATGTD 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A V + + +L V GR E + G +YVDYAHT ++LE L +R GR++ +F Sbjct: 315 PAAVWDGVSRLQPVRGRLERAVITATGAPVYVDYAHTPDALEAALAALRPHVEGRLLCIF 374 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIE 447 G GGDRD GKR MG++A +AD IVTDDNPR EDP IR +++ G E +R E Sbjct: 375 GAGGDRDTGKRAPMGEVASRMADAVIVTDDNPRGEDPAAIRGQVLEGAGDNAREMADRRE 434 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGLI 496 AIR IE +D++++AGKGHET I+ +GE M V D + RE I Sbjct: 435 AIREVIESAAAKDIVLIAGKGHETGQIIGSGE-NMRVEPFDDVQVARECAAQI 486 >gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 257/470 (54%), Gaps = 25/470 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA------IVVSSAYSLQDFSATIRSN 89 D R + G +F A G + +G FIP AIA GA A VV A + D Sbjct: 30 DHRKVAPGTVFGAFPGARVNGEDFIPAAIAAGAVAVVARPEAVVEGAVHIPDA------- 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 R+ + A+ + PE ++AVTGT+GK+S +QI + +G S IG Sbjct: 83 -------EPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGT 135 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + +TTP + +S L+ +G+TH++ EASSHGLDQ+R +G + AG+ Sbjct: 136 LGVTTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRSEGPVVAAGA 195 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH + +AYF AKMRLF+E++ + A+++ADD +S + A RVL Sbjct: 196 FTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALRVL 255 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +VG +G+ I L QQ+ + EG+ PL G +Q NALV+AGL +A G D Sbjct: 256 TVGERGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLATGGD 315 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L +L V GR E G +YVDYAHT +++ +R GR+IVVF Sbjct: 316 PTQTFDALGRLQPVRGRLERAAITRTGAPVYVDYAHTPDAITAACAALRPHVEGRLIVVF 375 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIE 447 G GGDRD GKR MG A AD+ IVTDDNPR EDP IRA ++ G G E G+R Sbjct: 376 GAGGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCTGVARETGDRRA 435 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV---DCDIIREILG 494 AI AI K D+++VAGKGHE ++ G+ ++ D ++RE G Sbjct: 436 AIAEAIAQAGKGDIVLVAGKGHEQGQVIGRGDAARTLPFDDVAVVRECTG 485 >gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Brevundimonas diminuta ATCC 11568] Length = 356 Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 160/315 (50%), Positives = 209/315 (66%), Gaps = 2/315 (0%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LT+P A+ L+ L+ + VTH+++EASSHG+DQ RLDG+ + A FTNL +DH+DYH Sbjct: 22 LTSPDAAEAARLLAELARKEVTHLALEASSHGIDQRRLDGVAIKAAGFTNLTQDHLDYHG 81 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 T Y AKMRLFE LLP+ A++ AD DAYS + AG V+ VG +G+ + L Sbjct: 82 TMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSA-FASASIMAGLGVMGVGERGRDLTLL 140 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 A Q++T+ V G+ D L PL G FQ NALVAAGLCIA G D V+ LE + Sbjct: 141 ARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLCIAGGEDPDRVIPALELIQ 200 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 GR + + +RGG +YVDYAHT + LE +L +R +GR+IVVFG GGDRD+ KRP Sbjct: 201 GAQGRLQRIPGGARGGEVYVDYAHTPDGLETVLNALRPHATGRLIVVFGAGGDRDRAKRP 260 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 +MG+IA LAD AIVTDDNPRSEDP IRA++ G P +E G+R EAIR A+ ++ + D Sbjct: 261 LMGEIAGRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDRREAIRHAVSLMREGD 320 Query: 461 VLVVAGKGHETVHIV 475 V+V+AGKGHE IV Sbjct: 321 VVVIAGKGHEQGQIV 335 >gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Novosphingobium aromaticivorans DSM 12444] Length = 482 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 179/476 (37%), Positives = 259/476 (54%), Gaps = 40/476 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI--------------PQAIAQ 66 +P+ + + + D R + G +F A G + +G FI P+A+ + Sbjct: 12 YPVAAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKAGAVAVVARPEAVVE 71 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA + V D R+ + A++ + PE ++AVTGT+G Sbjct: 72 GA-----------------------VHVADAEPRRAFAALAAQFFQPVPETVVAVTGTNG 108 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+S +QI + +G S+ IG T + + LTTP + ++ L+ +GVTH Sbjct: 109 KTSTVEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTPDIVTFLSNMTGLAREGVTH 168 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V+ EASSHGL Q R +G+++IAG+FTNL RDH+DYH T + YF AKMRLF+ ++ A Sbjct: 169 VAYEASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVA 228 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +++ DD +S ++ G R+LSVG QG+ I L Q + ++ +G Sbjct: 229 VVWMDDEWSGRAVEHVRRRGLRLLSVGEQGETIRLLARTPTQLGQVLEVAFDGARRKISL 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G +Q NALV+AGL IA GID+ V + L +L V GR E N G +YVDYAH Sbjct: 289 PLIGAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGRLERAAINRAGAPVYVDYAH 348 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +++E + +R GR+I VFG GGDRD+GKRP MG+ A +D+ IVTDDNPR ED Sbjct: 349 TPDAIEAAIAALRPHVKGRLITVFGAGGDRDEGKRPEMGRAACAGSDLVIVTDDNPRGED 408 Query: 425 PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P IRA I+ G E G+R AI AI + D+++VAGKGHE I+ G+ Sbjct: 409 PAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLVAGKGHEQGQIIGRGD 464 >gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum C str. Eklund] Length = 483 Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 178/479 (37%), Positives = 269/479 (56%), Gaps = 27/479 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E IN + DSR I +FVAI G K DGH FI +AI++GA+ IV S + + I Sbjct: 20 ELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEGAKVIVCSKEVEIHEEITYI 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + V NTRK L++ AS LY ++I + +TGT+GK++ ++ I + +G S+ Sbjct: 80 K-------VQNTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILELAGHST 132 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG TIS+F + ++ TTP + L + + + + + +E SSH L R+ Sbjct: 133 GLIG---TISNFIGNEKIKSERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVY 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++ G FTNL +DH+D+H+T + Y+ AK+ +F+ +II DD Y + V+ Sbjct: 190 GLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA----KNSIINIDDTYGERVLNDV 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ ++ + + K + + + + ++ +PG + VYNAL +AG Sbjct: 246 PDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKSEETHINLSIPGIYNVYNALCSAG 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379 C++ GI V + LE + VVPGR E G + +DYAHT + LE IL+ R Sbjct: 306 ACLSEGISMEDVKKGLESV-VVPGRCENATKEYDLGFDVIIDYAHTPDGLENILETARDF 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 T GR+I VFGCGGDRD+ KRPIMGKI D++DIAIVT DNPR+E+P +I +++ GI Sbjct: 365 TKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVTSDNPRTEEPSEIIKDVVEGIKKD 424 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDIIREIL 493 +I NR EAI+ AIE+ K DV+VVAGKGHE I+ + + V DII+E+ Sbjct: 425 NYIVVENRKEAIKKAIEIAKKGDVIVVAGKGHEDYQILKDKTIHFDEREVIADIIKELF 483 >gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erythrobacter sp. SD-21] Length = 492 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 186/474 (39%), Positives = 266/474 (56%), Gaps = 27/474 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F A G + +G FIP AI GA A+V +A ++ + I S+ P Sbjct: 28 DNRKVAPGTVFGAFQGAQVNGEDFIPAAIEAGAVAVVARAAAKVEG-ALHIASDIP---- 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149 RK + A+ + PE+I+AVTGT+GK+S +QI + SG + IG P Sbjct: 83 ---RKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGTLGVTTP 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++S+ LTTP + +S L+ +GVTHV+ EASSHGL Q+R +G+ + A F Sbjct: 140 DESVSTG-----LTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGVAVEAAGF 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCR 266 TN RDH+DYH + YF AKMRLF+E++ + A+I+ + ++ V+ A G Sbjct: 195 TNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRGLT 254 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V++VG QG+ I L Q +T+ G + PL G +QV NALV+ GL +A G Sbjct: 255 VMTVGEQGEDIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLALATG 314 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ID++ V + + +L V GR E G +Y+DYAHT ++LE + +R +GR+I Sbjct: 315 IDASRVWDAVARLQPVRGRLERAVIAPSGAPVYIDYAHTPDALEAAIAALRPHVTGRLIT 374 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFG GGDRD GKR MG+ A +D+ IVTDDNPR EDP IR ++ G E R Sbjct: 375 VFGAGGDRDHGKRAPMGEAAAKASDLVIVTDDNPRGEDPADIRRAVLEGAGEAREVAGRR 434 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV----DCDIIREILGLI 496 EAI AI K D++++AGKGHET I+ +GE M V D ++ RE LI Sbjct: 435 EAIHAAIAEAGKDDIVLIAGKGHETGQIIGSGE-NMRVHPFDDVEVARECAALI 487 >gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingopyxis alaskensis RB2256] Length = 479 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 183/467 (39%), Positives = 255/467 (54%), Gaps = 14/467 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ D R + G +F A VG + +G FIP V++ + + Sbjct: 19 VTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPD---------AVAAGAVAVVARPDAKVD 69 Query: 90 TPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + V D N R+ + A+R + + P +AVTGT+GK+S +Q+ + +G ++ IG Sbjct: 70 GAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNAASIG 129 Query: 149 PTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T S + LTTP + +S L+ +GVTH + EASSHGLDQ+R +G+ + A Sbjct: 130 TLGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLPVKAA 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL DH+DYH T +AY AKMRLF E++ AI++ADDA+S V++ A RV Sbjct: 190 AFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARARDVRV 249 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+VG G+ + L Q + I+ PL G +Q NALVAAGL IA G Sbjct: 250 LTVGQAGEALRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAAGLVIATGG 309 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D AL L +L +L V GR E G IYVDYAHT +++E L +R +GR+I+V Sbjct: 310 DVALTLANLARLQPVRGRLERAAIARSGAPIYVDYAHTPDAIEAALDALRPHATGRLILV 369 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447 FG GGDRDQ KRP MG++A AD+ I+TDDNPR EDP IR I PG G+R Sbjct: 370 FGAGGDRDQAKRPEMGRVAAAKADLLIITDDNPRGEDPAVIRDAIAAAAPGAQVIGDRRA 429 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV---DCDIIRE 491 AI AI D++ +AGKGHE IV G+ + D + RE Sbjct: 430 AIAAAIAAARADDIICIAGKGHEQGQIVGRGDDMRVIPFDDVSVARE 476 >gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium carboxidivorans P7] Length = 483 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 172/465 (36%), Positives = 267/465 (57%), Gaps = 39/465 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I E+ DSR++++G +FV I G DGH ++ A++ GA A++ S +++ + Sbjct: 22 EIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNGAAAVICSK--DIENLT----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ ++TRK L+L AS Y HP + ++ +TGT+GK++ ++ I + G + Sbjct: 75 ECTVIKTEDTRKVLAL-ASANYYDHPSDKLKVIGITGTNGKTTSTFMMKSILEAQG---Y 130 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI+++ D ++ TTP + L K + + +GV + +E SSH L R+ G Sbjct: 131 KVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIMEVSSHSLYLDRVYG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---- 257 +K FTNL RDH+D+H+T + Y+NAK+ LF+ L +++ DD Y + V Sbjct: 191 VKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNTLS----SVVNIDDEYGERVYEDSE 246 Query: 258 -KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ A +V V +G +H+ H++ + I+ + + +PG++ V NA Sbjct: 247 GKKTSYAIDKVADV--KGSNLHM------HSRGVEFDITYKNETQHINLNIPGKYNVMNA 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILK 374 L +A C+ G+ A V E LE + VPGR E V N G + VDYAHT + LE ILK Sbjct: 299 LGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVDYAHTPDGLENILK 358 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R T G++I VFGCGGDRD KRPIMGKI +L+D A++T DNPR+EDP I E++ Sbjct: 359 TAREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVITSDNPRTEDPMSIIKEVVA 418 Query: 435 GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ +I NR EAI+ A+EM K DV+VVAGKGHE I+ + Sbjct: 419 GVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKGHEDYQILKD 463 >gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum BKT015925] Length = 483 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 179/487 (36%), Positives = 270/487 (55%), Gaps = 49/487 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V DSR I +G +FVAI G DGH FIP+AI GA+ IV S + + I+ Sbjct: 23 VNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENGAKVIVCSKDTEINESCTYIK-- 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 V+NTRK L++ AS YG +P N ++ +TGT+GK++ ++ I + +G ++ Sbjct: 81 -----VENTRKALAIIASNFYG-NPSNKIKLIGITGTNGKTTSTYMIKSILEHAGCNTGL 134 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TI++F + ++ TTP + L + + + + + +E SSH L R+ G+ Sbjct: 135 IG---TIANFIGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIMEVSSHSLSLDRVYGL 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL +DH+D+H+T + Y+ AK+ +F +II DD+Y + ++K N Sbjct: 192 EFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFN----NAKNSIINIDDSYGERMLKDIPN 247 Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312 +V S Q + + G +FD ++ +PG + V Sbjct: 248 TNLKVTYSTERQADLV----------ANNIVNHARGAEFDLIYKGTTIHINLSIPGIYNV 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEM 371 YNAL +AG C+ I V E LE + VVPGR E V + G + VDYAHT + LE Sbjct: 298 YNALCSAGACLEEEISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAHTPDGLEN 356 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 IL + T GR+I VFGCGGDRD+ KRPIMGKI DL+DIAI+T DNPR+E+P I + Sbjct: 357 ILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITSDNPRTEEPMSIIDD 416 Query: 432 IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDC 486 ++ GI ++ NR +AI+ A+++ K DV+VVAGKGHE I+ + + V Sbjct: 417 VVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKGHEDYQILKDKVIHFDEREVIA 476 Query: 487 DIIREIL 493 DI++E+ Sbjct: 477 DIVKELF 483 >gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium novyi NT] gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium novyi NT] Length = 483 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 174/481 (36%), Positives = 270/481 (56%), Gaps = 31/481 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +++ + DSR I +FVAI G DGH FI +AI +GA+ IV S I Sbjct: 20 ELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEGAKVIVCSKEIE-------I 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + + V+NTRK L++ AS LY ++I + +TGT+GK++ ++ I + +G S+ Sbjct: 73 KKGITYIKVENTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTSTYMIKSILESAGHST 132 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG TIS+F + ++ TTP + L + + + + + +E SSH L R+ Sbjct: 133 GLIG---TISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVMEVSSHSLSLDRVY 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++ G FTNL +DH+D+H+T + Y+ AK+ +F+ +II DD Y + ++ Sbjct: 190 GLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA----KNSIINIDDTYGERILNDV 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ ++ + + K + + + + K+ +PG + VYNAL +AG Sbjct: 246 PDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKDKETHINLSIPGIYNVYNALCSAG 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379 C++ GI V + LE + VVPGR E + G + +DYAHT + LE IL+ R Sbjct: 306 ACLSEGISMEDVKKGLESV-VVPGRCENATKDYDLGFDVIIDYAHTPDGLENILETARDF 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 T GR+I VFGCGGDRD+ KRPIMGKI D++DIAI+T DNPR+E+P +I +++ GI Sbjct: 365 TKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIITSDNPRTEEPSQIIKDVVEGIKKD 424 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREI 492 +I NR EAI+ AIE+ + DV+VVAGKGHE I+ +K + D DII+E+ Sbjct: 425 NYIVVENRKEAIKKAIEIAKQGDVIVVAGKGHEDYQILK--DKTIHFDERELIADIIKEL 482 Query: 493 L 493 Sbjct: 483 F 483 >gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 500 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 172/492 (34%), Positives = 270/492 (54%), Gaps = 32/492 (6%) Query: 2 KLQDLIYKDF---PELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 K+Q+ +DF +LI + + ++ + I +++ +S++ + G FV I G K DG Sbjct: 5 KMQNRKGEDFLKLKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDG 64 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H +I +AI GA +VV + ++ I + NTRK L++ ++ +G HP Sbjct: 65 HEYIDEAIKNGARLVVVDEFFD----TSKIDGKIDYIKTSNTRKALAVMSANFFG-HPSK 119 Query: 117 ---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169 ++ VTGT+GK+S ++ I + +S ++G TI + + TTP Sbjct: 120 DFLLIGVTGTNGKTSTTFMIKSILE---ANSQKVGLIGTIKNMIGSKEIEAQHTTPESYD 176 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L K + ++GV V +E SSH L+ +R+ G FTNL +DH+D+H T + YF A Sbjct: 177 LQKLFWQMKNEGVDSVVMEVSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAA 236 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K++LFE ++ ADD++ K +++ + Q + K V NK Sbjct: 237 KLKLFE----MSKKRVVNADDSWGKRIIEMYPDCVTYAKDSDAQ---VCTKNVKLFVNKN 289 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 Q + GK + +PG F +YN+L AA CI++GI+ + + LE L VPGRFE V Sbjct: 290 QFELWYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIV 349 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 +N R I +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA + Sbjct: 350 ESNERF-TIVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRM 408 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD IVT DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+A Sbjct: 409 ADFVIVTSDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLA 468 Query: 466 GKGHETVHIVTN 477 GKGHET I+ + Sbjct: 469 GKGHETYQILKD 480 >gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 492 Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 181/485 (37%), Positives = 272/485 (56%), Gaps = 30/485 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + W E ++ + DSR ++ G IFVAI G DGH FI + I + A++V+ F Sbjct: 19 INWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVIEK-KPALIVAEEERPGIF 77 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140 L+V ++R+ L+L A YG E I + VTGT+GK++V V + + Sbjct: 78 GVNH------LLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGKTTVTHLVTSLLESF 131 Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G ++ G TI + D L TTP + L + + + V+HV++E SSH L Q Sbjct: 132 G---YKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHVAMEVSSHALVQ 188 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKE 255 R+ GI G FTNL +DH+D+H++ + YFNAK LF+ L +++ P +I DD Y + Sbjct: 189 KRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKILAEQKALPGVINKDDFYGQR 248 Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++K + ++ G + + I K V ++ T+ + +++ L G F VYN Sbjct: 249 ILKEVAHP---FVTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKVKLLGLFNVYN 305 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G + +G ++++L L+ VPGRFE + + + VDYAHT + LE ILK Sbjct: 306 ILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELI-DEGQDFAVIVDYAHTPDGLENILK 364 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R IT GR+I VFGCGGDRD+ KRP MGKI+ LADI I+T DNPR+EDPE I EI Sbjct: 365 SARAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIITSDNPRTEDPEAIINEIEK 424 Query: 435 G----IPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G +PG ++++ +R +AI+TA+ + D +V+AGKGHE I+ G K D ++ Sbjct: 425 GFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKGHEDYQII--GTTKYPFDDRVV 482 Query: 490 -REIL 493 REIL Sbjct: 483 AREIL 487 >gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 520 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 180/495 (36%), Positives = 283/495 (57%), Gaps = 42/495 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA--------IAQGAEAIVVS------ 74 +I V+ + + ++ G++FV + ++ +P + QGA+ V+ Sbjct: 20 EIKGVTCNPKRVKEGYLFVCVSERSKEHVTCLPNGCVHNCVDVVIQGAKKDVIPVLRHWD 79 Query: 75 ------SAYSLQDF-------SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENI 117 + ++ Q + SAT ++TP +L + + S SR Y K P+ + Sbjct: 80 PENLIVNKHTRQLYNENWIPVSATRMTSTPSFAVLYHSDPQGIYSEIVSRFYQFKQPKYV 139 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK+SV F +QI Q + S +G + +++ +DN LTTPS L L + Sbjct: 140 AAVTGTNGKTSVVEFCRQIWQDNVASIGTLG--TCVNNNRKDNSLTTPSADDLYSTLRDI 197 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +++ V H+++EASSHG+DQ+R+ G++L A +FTN +DH+DYH++ YF AK RLF+E+ Sbjct: 198 NNKNVEHLALEASSHGIDQYRIHGLRLNAAAFTNFSQDHLDYHKSIDEYFEAKKRLFDEV 257 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LPKE AI+ AD E++ A G +V++ G + I L K N Q +TI + Sbjct: 258 LPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSDITLLKQIPTANGQYLTIQIGD 317 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + ++ FP+ G+FQ YN L A G+ I+ G+D + ++KL GR E V T + Sbjct: 318 EIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--IDKLASPSGRMEKVNTFA---- 371 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +VDYAHT ++L+ L +++ + +I++VFGCGG+RDQ KR MGKIA LA IVTD Sbjct: 372 -FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQTKRAEMGKIAQMLAGKVIVTD 430 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVT 476 DNPR EDP KIR +I+ P +E G+R +AI I + + ++ +L+VAGKGHE I+ Sbjct: 431 DNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIAHDENMILLVAGKGHERFQIIE 490 Query: 477 NGEKKMSVDCDIIRE 491 + S D ++IRE Sbjct: 491 GQSLEFS-DVEVIRE 504 >gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E3 str. Alaska E43] Length = 484 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 176/482 (36%), Positives = 279/482 (57%), Gaps = 35/482 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ V+ DSR ++ IF+ I G DGH +I +AI GA I+ +QD + Sbjct: 20 DKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENGASVII------MQDDIEVV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N ++ V +TRK L+L Y + I+ +TGT+GK++ A ++ I + +G Sbjct: 74 NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI+++ + +L TTP + L + + + ++GV + +E SSH L+ R+ Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G FTNL RDH+D+H+T + Y+N+K +LF+ + + II DD Y K+V+K Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246 Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + + S+ F + N +++E K+ +F+ +PGE+ +YNAL Sbjct: 247 NKLKAKNIYEYSIREDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376 A G C + I + E + K+ +VPGR E TN + I +DYAHT + L+ IL+ Sbjct: 305 AIGACYKLNIPMEAIREGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLQNILETA 363 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIVT DNPRSE+P KI +I+ GI Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMKIIEDILVGI 423 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIRE 491 IE NR +AI+ A+++ + DV+V+AGKGHET I+ +K + D +I+++ Sbjct: 424 EKDNYEVIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILK--DKTIHFDEREIVKQ 479 Query: 492 IL 493 IL Sbjct: 480 IL 481 >gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Sphingomonas sp. S17] Length = 476 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 178/445 (40%), Positives = 249/445 (55%), Gaps = 16/445 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G IF A G + +G FI A+ GA A+V +++ + I S+ P Sbjct: 25 DHRKVAPGTIFGAFQGARVNGEDFIADAVRSGAIAVVTRPGVTVEG-AVHIASDEP---- 79 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 R + A+ + P +AVTGT+GK+S +Q+ + +G + IG T+ Sbjct: 80 ---RAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHAASIG---TLGV 133 Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 D R LTTP + ++ L+ +GVTH++ EASSHGL Q+R +G+++ A +FTN Sbjct: 134 TTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLEVSAAAFTN 193 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH AY AKMRLF E+L A+++ADD S V+ A G R+++VG Sbjct: 194 LSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARARGNRLMTVG 253 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +G + L + Q + I E G PL G +Q NALV+AGL +A G D Sbjct: 254 TRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGLVLATGGDVT 313 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 L +L +L V GR E G +YVDYAHT ++LE + ++ GR+IVVFG Sbjct: 314 TTLANLSRLQPVRGRLERAAIARSGAPVYVDYAHTPDALEAAIAALKPHAGGRLIVVFGA 373 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GGDRD GKR MG++A AD IVTDDNPR+EDP IR +++ G G IE G+R EAI Sbjct: 374 GGDRDPGKREAMGQVASMQADRVIVTDDNPRTEDPAAIRTQVMRGATGAIEIGDRREAIA 433 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIV 475 AI QD++++AGKGHE IV Sbjct: 434 AAIAEAGGQDIVLIAGKGHEQGQIV 458 >gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum H04402 065] Length = 483 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 172/474 (36%), Positives = 275/474 (58%), Gaps = 42/474 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 M+ +++I ++ DSR ++ G +FV I G DGH + +A GA+ IV L+D Sbjct: 15 MKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139 S + I+ V ++RK L++ +S YG KH + I+ +TGT+GK++ ++ I ++ Sbjct: 73 S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G +++G TI+++ + ++ TTP I L K + + V + +E SSH L Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVMEVSSHSLY 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I DD+Y ++ Sbjct: 187 LDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 V+K+A G ++ + G L+K C + + + + G +FD +F + Sbjct: 243 VLKKA--LGNKI-TYG-------LEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N + G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465 >gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paracoccus denitrificans PD1222] Length = 489 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/455 (38%), Positives = 265/455 (58%), Gaps = 4/455 (0%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + R+ ++ ++ DSR ++ G +F A+ G+ G FI A+ QGA AI+ + + Sbjct: 12 KGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAA 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + ++ ++V ++ R L+ A+ + PE ++AVTGTSGK+SVASF +QI Q G Sbjct: 72 ELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHK 131 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + +G + TTP PI L + L+ ++ GVTH ++EASSHGLDQ RLDG++ Sbjct: 132 AISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVR 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L AG+FTN +DH+DYH+ YF AK LF+ +L + + A+I DD +++ + A Sbjct: 192 LKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGER 251 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G ++ ++G + + L+ + ++ Q + G+ L G FQ N L AAGL Sbjct: 252 GLKLTTIG-KDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGL 310 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 IA G ++ V+E L L V GR E G ++VDY+H +L L+++R Sbjct: 311 AIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASALQSLRPHVM 370 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 GRI+VVFG GGDRD+ KRP+MG+ A AD+ VTDDNPRSEDP IRAE++ G P I Sbjct: 371 GRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVMAGAGPDAI 430 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R EAI ++ L D L++AGKGHET I+ Sbjct: 431 EVGDRAEAILRGVDALQPGDALLIAGKGHETGQII 465 >gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate ligase [Gluconacetobacter sp. SXCC-1] Length = 490 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 190/495 (38%), Positives = 266/495 (53%), Gaps = 20/495 (4%) Query: 11 FPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 PEL+ + + P R I+ +++DSR G IF A+ G DG +IPQA AQG Sbjct: 3 LPELLRRAGLDIALPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A+++ + D T + LV + R L+ A L + P +I A+TGT+GK+ Sbjct: 63 AAAVLLEA-----DPGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAITGTNGKT 117 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTH 184 S A F++QI L + IG ++ + LTTP + L L ++ GV H Sbjct: 118 STAEFLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEH 177 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++EASSHGL+Q RLDG+ A F+NL RDH+DYH T + Y AK+RLF+ +LP+ A Sbjct: 178 VAIEASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIA 237 Query: 245 IIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AD DA + A G + + G +G + L Q + + + Sbjct: 238 AFNADMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREM 297 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G FQV N L+A C G D + L +LH V GR E G Y Sbjct: 298 EVPLVGRFQVDNMLLA---CAMAGRDEGAADHAVSLLPRLHGVRGRMERAAVLDSGAAAY 354 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT +++E +L ++R T GR+++V G GGDRD+GKRP+MG+IA LAD IVTDDN Sbjct: 355 VDYAHTPDAIERLLCSLRPHTPGRLVIVMGAGGDRDRGKRPVMGEIATRLADRVIVTDDN 414 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 PR+E P IRA I+ PG IE G+R +AI + +L DV+VVAGKGHE + + Sbjct: 415 PRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKGHEQGQTIGHDV 474 Query: 480 KKMSVDCDIIREILG 494 D +IR++LG Sbjct: 475 LPFD-DATVIRDLLG 488 >gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum D str. 1873] Length = 483 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/488 (36%), Positives = 267/488 (54%), Gaps = 49/488 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N++ DSR + G +FVAI G DGH FI +AI GA+ I+ S + S I+ Sbjct: 22 EVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENGAKVIICSKNTEFYENSTYIK- 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 V+NTRK L++ AS YG +P N ++ +TGT+GK++ ++ I + +G ++ Sbjct: 81 ------VENTRKALAIMASNFYG-NPSNEIKLIGITGTNGKTTSTYMIKSILEHAGCNTG 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG TI++F + ++ TTP + L + ++ + + + +E SSH L R+ G Sbjct: 134 LIG---TIANFIGEKKIKAERTTPESLELQEMFKKMNDKNIEYCIMEVSSHSLSLDRVYG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K G FTNL +DH+D+H+T + Y+ AK+ +F +II DD Y ++K Sbjct: 191 LKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNA----KNSIINIDDFYGDRMLKDIP 246 Query: 262 NAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 ++ S Q + + G +FD ++ +PG + Sbjct: 247 KTSTKITYSTERQADLF----------AENIVNHSRGAEFDLIYKETMIHINLSIPGIYN 296 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLE 370 VYNAL +A C+ GI V E LE + VVPGR E V + G + VDYAHT + LE Sbjct: 297 VYNALCSAAACLEEGISIEKVKEGLENV-VVPGRCENVTKKYNLGFDVIVDYAHTPDGLE 355 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 IL + T GR+I VFGCGGDRD+ KRPIMGKI +L+DIAI+T DNPR+E+P I Sbjct: 356 NILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITSDNPRTEEPMSIID 415 Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVD 485 +++ GI +I NR EAI+ A++M K DV+VVAGKGHE I+ + + V Sbjct: 416 DVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKGHEDYQILKDKVIHFDEREVI 475 Query: 486 CDIIREIL 493 DI++E+ Sbjct: 476 ADIVKELF 483 >gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citromicrobium bathyomarinum JL354] Length = 495 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 182/452 (40%), Positives = 258/452 (57%), Gaps = 21/452 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +F A G K +G FI A+A GA A+VV ++ + I P Sbjct: 28 DHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAGAIAVVVRPGAKVEG-ALQIADEAP---- 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------P 149 RK + A++ + P+ I+AVTGT+GK+S +Q+ + G + IG P Sbjct: 83 ---RKAFAEIAAQYFTPAPDTIVAVTGTNGKTSTVEMTRQLWRMLGERAASIGTLGVTTP 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++S+ LTTP + LS L+ +GVTH++ EASSHGLDQ+R G +++AG+F Sbjct: 140 DESVSTG-----LTTPDIVTFHANLSGLAREGVTHIAYEASSHGLDQYRNYGARVVAGAF 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVL 268 TN RDH+DYH++ QAYF AKMRLF+E++ A+I+AD ++ + RA G R+ Sbjct: 195 TNFSRDHLDYHESMQAYFEAKMRLFDEVIADGGTAVIWADGGEWADKARTRAEKRGLRIF 254 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +VG QG I L Q V I+ G PL G++Q NAL AA L +A G D Sbjct: 255 TVGPQGDDICLIGQEPSQLGQSVEIARNGDRRTIRLPLIGQYQAANALTAAALALASGAD 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A + + + +L V GR E G +YVDYAHT ++LE + +R +GR+IVVF Sbjct: 315 EARLWDAVGRLQPVRGRLERAVITQSGAPVYVDYAHTPDALEAAIAALRPHVNGRLIVVF 374 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIE 447 G GGDRD GKR MG++A LAD+ IVTDDNPR EDP IR ++ G E R E Sbjct: 375 GAGGDRDTGKRGPMGEVASRLADVVIVTDDNPRGEDPADIRRAVMQGAGENTREVAGRRE 434 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 AI AIE++ + D++++AGKGHE I+ +G+ Sbjct: 435 AIAQAIEIIGRDDIVLIAGKGHEEGQIIGSGD 466 >gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium kluyveri DSM 555] gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016] gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555] gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 485 Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 174/458 (37%), Positives = 254/458 (55%), Gaps = 27/458 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E+ DSR ++ G +FV I G DGH +I A GA AIV+S DF + Sbjct: 23 IGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNGAAAIVLSKKV---DFIP----D 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ V +TRK L+L +S Y E+ I+ +TGT+GK++ V+ I + +G +++ Sbjct: 76 CTVIEVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTSTFMVKSILETAG---YKV 132 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TIS++ + ++ TTP + L K + GV + +EASSH L R+ G++ Sbjct: 133 GVVGTISNYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVMEASSHSLYLDRVYGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+D+H+T + Y+ +K+ LF+ + ++I DD Y + V + A Sbjct: 193 FCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVN----SVINIDDKYGERVYEDAKG- 247 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + L+ + IH++ IS EG +PG++ V NAL +AG+C Sbjct: 248 --KKLTYAIDKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIPGKYNVMNALGSAGVC 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A GID V + LE + VPGR E V + + G + VDYAHT + LE ILK R T Sbjct: 306 LAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVDYAHTPDGLENILKCAREFTK 365 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439 G++I VFGCGGDRD KRPIMG I +D A+VT DNPR E+P I +I+ GI + Sbjct: 366 GKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVTSDNPRGEEPMAIIKDILTGIKKNNY 425 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I NR EAI+ A+EM DV+V+AGKGHE I+ + Sbjct: 426 IVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQILKD 463 >gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B1 str. Okra] Length = 483 Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 278/483 (57%), Gaps = 42/483 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ L ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ IV Sbjct: 6 ILKSLEYSIIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVC 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVA 130 L+D S + I+ V ++RK L++ +S YG KH + I+ +TGT+GK++ Sbjct: 66 EK--DLEDLS--YYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTST 120 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 ++ I +++G +++G TI+++ + ++ TTP + L K + + V + Sbjct: 121 FMMKAILEKAG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVI 233 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP- 305 DD+Y ++V+K+A G ++ + G ++K C + + + + G +FD +F Sbjct: 234 NIDDSYGEKVLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKN 282 Query: 306 --------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356 +PG++ +YNAL + G C+ GI + E LE + VPGR E V N + G Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPR+EDP+ I +++ GI +I R +AIR A+EM + DV+VVAGKGHE I Sbjct: 403 SDNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKGHEDYQI 462 Query: 475 VTN 477 + + Sbjct: 463 LKD 465 >gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum 5521] gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 486 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 178/499 (35%), Positives = 279/499 (55%), Gaps = 34/499 (6%) Query: 10 DFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + ++N L +Q E +IN+++ DSR + +FV + G DGH + +A+ GA Sbjct: 2 NLKSILNGLDYELLQGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 + IV+ ++ D TI + +TRK L+L + YG E I+ +TGT+GK Sbjct: 62 KVIVIQDDVNIDDKEITI------VKCSDTRKALALMGANYYGNPSEKMKIIGITGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 ++ A ++ I + +G ++G TI+++ ++ TTP + L + + +GV Sbjct: 116 TTTAFMIKDILECAGK---KVGLIGTIANYICGEKIHTERTTPESLELQELFGEMVEKGV 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH L R+ G+K G FTNL RDH+D+H+T + Y++AK +LFE K Sbjct: 173 EYCVMEVSSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFERSCIK-- 230 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298 +I DD Y +V+K + SV + ++ + K +V + E Sbjct: 231 --VINVDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVLDEEE- 287 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGR 357 +F+ +PGE+ +YNAL A G+C +GI + E +E +VPGR E VG + Sbjct: 288 --EFILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENA-LVPGRCERVGKEYNLPYE 344 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I +DYAHT + LE ILK + T G++I +FGCGGDRD+ KRP MGKI +D+AD+A++T Sbjct: 345 IIIDYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVITS 404 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPRSEDP I +I G+ +I NR +AI+ AIE+ K DV+V+AGKGHET I+ Sbjct: 405 DNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKGHETYQIL 464 Query: 476 TNGEKKMSVD-CDIIREIL 493 +K + D ++++EIL Sbjct: 465 K--DKTIHFDEREVVKEIL 481 >gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseomonas cervicalis ATCC 49957] gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseomonas cervicalis ATCC 49957] Length = 425 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 166/414 (40%), Positives = 236/414 (57%), Gaps = 13/414 (3%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L + R+ L+ A+ +G+ P +AVTGT+GK+S F++QI +G + +G Sbjct: 14 PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73 Query: 151 S-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 F + LTTP P+ L + L+ L+ GV V++EASSHGL+Q RLDG++L A F Sbjct: 74 GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----KEVMKRAHNAG 264 +NL RDH+DYH AY AK+RLF+ LL + A+ AD A + V +R H Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRH--- 190 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R+ +VG G+ I L + + Q + +++ G+ + L LPG FQ N ++AAGL ++ Sbjct: 191 LRLATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVS 250 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ + V L +L V GR E G +YVDYAHT ++LE +L +R GR+ Sbjct: 251 AGMPADKVAGLLPRLTGVRGRMELAARLPNGAAVYVDYAHTPDALERLLTALRPHAEGRL 310 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441 VVFG GGDRD GKRP+MG++ LAD AI+TDDNPR EDP IRA + G+ G E Sbjct: 311 HVVFGAGGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMAGGAAITE 370 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 G+R AI + L DVL VAGKGHE + G D + +R + G+ Sbjct: 371 IGDRAAAIEAGLAALGPGDVLAVAGKGHEPGQTI-QGVTHPFDDAETVRRLAGV 423 >gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum B str. Eklund 17B] Length = 484 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 267/465 (57%), Gaps = 32/465 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ ++ DSR + IF+ I G DGH +I +AI GA I+ +QD + Sbjct: 20 DKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENGASVII------MQDDIEVV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N ++ V +TRK L+L Y + I+ +TGT+GK++ A ++ I + +G Sbjct: 74 NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI+++ + +L TTP + L + + + ++GV + +E SSH L+ R+ Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G FTNL RDH+D+H+T + Y+N+K +LF+ + + II DD Y K+V+K Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246 Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + + S+ F + N +++E K+ +F+ +PGE+ +YNAL Sbjct: 247 NKLKAKNIYEYSIKEDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376 A G C + I + + K+ +VPGR E TN + I +DYAHT + L+ IL+ Sbjct: 305 AIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLQNILETA 363 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIVT DNPRSE+P +I +I+ GI Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMRIIEDILVGI 423 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IE NR +AI+ A+++ + DV+V+AGKGHET I+ + Sbjct: 424 EKDNYEIIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILKD 466 >gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 495 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 267/488 (54%), Gaps = 33/488 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KL+DLI E I+ + + ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 10 LKLKDLI-----ENIDAMETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYI 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA +VV + ++ I + NTRK L++ ++ +G HP + Sbjct: 64 DEAIKNGARLVVVDEFFD----TSKIEGKVDYIKTSNTRKALAVMSANFFG-HPSKDFLL 118 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+S ++ I + +S ++G TI + + TTP L K Sbjct: 119 IGVTGTNGKTSTTFMIKSILE---ANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKL 175 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++L Sbjct: 176 FWQMKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKL 235 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F ++ ADD++ K +++ + Q + K + NK Q + Sbjct: 236 F----GMSKKRVVNADDSWGKRIIEMYPDCVTYAKDSDAQ---VCAKNIKLFVNKNQFEM 288 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 GK + +PG F +YN+L AA CI++GI+ + + LE L VPGRFE V +N Sbjct: 289 WYNGKKEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNE 348 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 R I +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD Sbjct: 349 RF-TIVIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFV 407 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 IVT DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGH Sbjct: 408 IVTSDNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGH 467 Query: 470 ETVHIVTN 477 ET I+ + Sbjct: 468 ETYQILKD 475 >gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 484 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 268/465 (57%), Gaps = 32/465 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ V+ DSR ++ +F+ I G DGH +I +AI GA I+ +QD + Sbjct: 20 DKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENGASVII------MQDEIEVV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N ++ V +TRK L+L Y + I+ +TGT+GK++ A ++ I + +G Sbjct: 74 NKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTTAFMIKSILESNGK-- 131 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI+++ + +L TTP + L + + + ++GV + +E SSH L+ R+ Sbjct: 132 -KVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVMEVSSHSLELDRVY 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G FTNL RDH+D+H+T + Y+N+K +LF+ + + II DD Y K+V+K Sbjct: 191 GVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFK----RSNIRIINNDDNYGKQVIKDL 246 Query: 261 HNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + + S+ F + N +++E K+ +F+ +PGE+ +YNAL Sbjct: 247 NKLKAKNIYEYSIKEDSNFKAFDEKMGSKN-ISFKVNLE-KEEEFILSIPGEYNIYNALG 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNI 376 A G C + I + + K+ +VPGR E TN + I +DYAHT + L+ IL+ Sbjct: 305 AIGACYKLNIPMEAIKNGINKV-IVPGRCERTATNYNLPYDIIIDYAHTPDGLKNILETA 363 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GR+I +FGCGGDRD+ KRP MGKI D+ADIAIVT DNPRSE+P +I +I+ GI Sbjct: 364 RGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIVTSDNPRSEEPMRIIDDILVGI 423 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IE NR +AI+ A+++ + DV+V+AGKGHET I+ + Sbjct: 424 EKDNYEVIE--NRKDAIKKAMDIAKENDVIVIAGKGHETYQILKD 466 >gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 3502] gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. ATCC 19397] gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A str. Hall] gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A2 str. Kyoto] Length = 483 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ IV L+D Sbjct: 15 IKENKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139 S + I+ V ++RK L++ +S YG KH + I+ +TGT+GK++ ++ I ++ Sbjct: 73 S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G +++G TI+++ + ++ TTP + L K + + V + +E SSH L Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I DD+Y ++ Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 V+K+A G ++ + G ++K C + + + + G +FD +F + Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N + G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465 >gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum NCTC 2916] gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Bf] gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum Ba4 str. 657] Length = 483 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ IV L+D Sbjct: 15 IKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139 S + I+ V ++RK L++ +S YG KH + I+ +TGT+GK++ ++ I ++ Sbjct: 73 S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G +++G TI+++ + ++ TTP + L K + + V + +E SSH L Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I DD+Y ++ Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 V+K+A G ++ + G ++K C + + + + G +FD +F + Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N + G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465 >gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum F str. Langeland] gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Clostridium botulinum F str. 230613] Length = 483 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 275/474 (58%), Gaps = 42/474 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ IV L+D Sbjct: 15 IKEYKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEDL 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139 S + I+ V ++RK L++ +S YG KH + I+ +TGT+GK++ ++ I ++ Sbjct: 73 S--YYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G +++G TI+++ + ++ TTP + L K + + V + +E SSH L Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I DD+Y ++ Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 V+K+A G ++ + G ++K C + + + + G +FD +F + Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E LE + VPGR E V N + G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465 >gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 500 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 269/490 (54%), Gaps = 37/490 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KL+DLI E I+ L + ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 15 LKLKDLI-----ENIDVLETNVGDF-DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 68 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA +VV + ++ I + NTRK L++ ++ + HP + Sbjct: 69 DEAIQNGARLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFA-HPSKDFLL 123 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S ++ I + +G IG + I S + + TTP L K Sbjct: 124 IGVTGTNGKTSTTFMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQ 183 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + S+GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF+AK++LF Sbjct: 184 MKSEGVDSVVMEVSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-- 241 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291 ++ ADD++ K +++ + C + VCA + NK Q Sbjct: 242 --GMSKKRVVNADDSWGKRIIEMYPD--CITYAKDSDAN------VCAQNIKLFVNKNQF 291 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + K + L +PG F +YN+L AA CI +GI+ + + LE+L VPGRFE V + Sbjct: 292 DLYYNNKKENILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES 351 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N + + +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD Sbjct: 352 NQKF-TVVIDYAHTPDGLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMAD 410 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 IVT DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGK Sbjct: 411 FVIVTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGK 470 Query: 468 GHETVHIVTN 477 GHET I+ + Sbjct: 471 GHETYQILKD 480 >gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 486 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 266/485 (54%), Gaps = 27/485 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DLI ++ L + F ++ I +++ +S++ + G +FV I G K DGH +I Sbjct: 1 MKLLDLI-ENIDVLETNVGDF-----DKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA +VV + ++ I + NTRK L++ ++ +G HP + Sbjct: 55 NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S ++ I + G IG + I S + + TTP L K Sbjct: 110 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQ 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + S+GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 170 MKSEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 ++ ADD + K +++ ++ Q + + + NK Q + Sbjct: 228 --GMSKKRVVNADDMWGKRIIEMYPDSVTYAKDSDAQ---VFARNIKLFVNKNQFELWYN 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V +N + Sbjct: 283 GEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKF- 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT + L ++K + +T GR +++FGCGGDRD+ KRPIMG+IA +AD IVT Sbjct: 342 TVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 402 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETY 461 Query: 473 HIVTN 477 I+ + Sbjct: 462 QILKD 466 >gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 486 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 169/485 (34%), Positives = 266/485 (54%), Gaps = 27/485 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DLI ++ L + F + I +++ +S++ + G +FV I G K DGH +I Sbjct: 1 MKLKDLI-ENIDVLETNVGDFG-----KDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA +VV + ++ I + NTRK L++ ++ +G HP + Sbjct: 55 NEAIQNGACLVVVDEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S ++ I + G IG + I S + + TTP L K Sbjct: 110 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQ 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 170 MKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 ++ ADD + K +++ ++ Q + + + NK Q + Sbjct: 228 --GMSKKRVVNADDMWGKRIIEMYPDSVTYAKDSDAQ---VFARNIKLFVNKNQFELWYN 282 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V +N + Sbjct: 283 GEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKF- 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT + L ++K + +T GR +++FGCGGDRD+ KRPIMG+IA +AD IVT Sbjct: 342 TVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGKGHET Sbjct: 402 SDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETY 461 Query: 473 HIVTN 477 I+ + Sbjct: 462 QILKD 466 >gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor owensensis OL] Length = 495 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 172/490 (35%), Positives = 269/490 (54%), Gaps = 37/490 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KL+DLI ++ L + F ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 10 LKLKDLI-ENIDVLETNVGDF-----DKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYI 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA IVV + ++ I+ + NTRK L++ ++ + HP + Sbjct: 64 DEAIQNGARLIVVDEFFD----TSKIKGKIDYIKTSNTRKALAVMSANFFA-HPSKDFLL 118 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S ++ I + G IG + I S + + TTP L K Sbjct: 119 IGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQ 178 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF+AK++LF Sbjct: 179 MRNEGVDSVVMEVSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLF-- 236 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291 +I ADD++ K +++ + C + VCA + NK Q Sbjct: 237 --GMSKKRVINADDSWGKRIIEMYPD--CMTYAKDSNAT------VCARNIKLYVNKNQF 286 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + K + L +PG F +YN+L AA CI +GI+ + + LE+L VPGRFE V + Sbjct: 287 DLWYNDKKEEILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVES 346 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N + + +DYAHT + L +++ + + GR +++FGCGGDRD+ KRPIMG+IA +AD Sbjct: 347 NEKF-TVVIDYAHTPDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMAD 405 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 IVT DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGK Sbjct: 406 FVIVTSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGK 465 Query: 468 GHETVHIVTN 477 GHET I+ + Sbjct: 466 GHETYQILKD 475 >gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter uraniireducens Rf4] Length = 506 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 189/517 (36%), Positives = 273/517 (52%), Gaps = 71/517 (13%) Query: 14 LINQL--SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+++L S+ P++ + +I + DSR ++AG +F A+ G DG+ F+ AI GA Sbjct: 2 LLSELTKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A+VV + Q P + V + R +S A+ YG + + +TGT+GK Sbjct: 62 VAVVVDGTLTPQ--------GIPWVRVADARLAMSRMAAAFYGFPTATLPLVGITGTNGK 113 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++ ++ I ++SG+ + +G T++ ++ + TTP + L + L L G Sbjct: 114 TTITYLIESILEKSGIPAAVLG---TVNYRFREKAIPAPNTTPESVDLQRTLRELIDMGA 170 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---- 238 V +E SSH L Q R+DG G FTNL RDH+DYH ++YF +KMRLF ELL Sbjct: 171 KGVVMEVSSHALQQRRVDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADR 230 Query: 239 --PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 PK A++ DD Y +++ A C VLS G G H++ ++V SV Sbjct: 231 IKPKRC-AVVNIDDPYGPRIVQ---GAACPVLSYGISGN-AHVRA-------ERVVFSVA 278 Query: 297 GKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 G + P L G F +YN L A IA+ + + E LE VPGR E Sbjct: 279 GISCVLVTPQGQINLHSELLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVE 338 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V N RG I VDYAHT ++LE +L+ + + GRII VFGCGGDRD+GKRP+MG+IA Sbjct: 339 RV-ANDRGLTILVDYAHTGDALENVLRTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAG 397 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------GFIEKG-----NRIEA 448 +D++I+T DNPRSEDPEKI A + GI GF EKG +R EA Sbjct: 398 RYSDLSIITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAAVESRREA 457 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 IR A+ D++++AGKGHE I+ G +K D Sbjct: 458 IRLAVAAARPGDIVLLAGKGHEDYQII--GSEKHHFD 492 >gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium ljungdahlii DSM 13528] Length = 482 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 265/479 (55%), Gaps = 38/479 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E+ DSR +++G +FV I G DGH +I +A GA AIV+S N Sbjct: 23 IGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNGAAAIVISEEVE----------N 72 Query: 90 TP---ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 P ++ V +TRK L++ +S Y + I+ +TGT+GK++ ++ I + +G Sbjct: 73 VPDCTVIKVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTSTFMMKSILETAG--- 129 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++G TI+++ + ++ TTP + L K + +GV + +E SSH L R Sbjct: 130 YKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVMEVSSHSLYLDRAY 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++ FTNL RDH+D+H+T + Y+ AK+ LF+ + ++I DD Y +V + A Sbjct: 190 GVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTIN----SVINIDDKYGDKVYEDA 245 Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G ++ K LK IH++ I+ G+ +PG++ V NAL + Sbjct: 246 --LGTKITYA--INKEADLKANDLNIHSRGANFNITYRGQTAHINLNIPGKYNVMNALGS 301 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377 G C+ GI +V + LE ++ VPGR E V + G + VDYAHT + LE ILK R Sbjct: 302 IGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVDYAHTPDGLENILKTAR 361 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 T+GR+I VFGCGGDRD KRPIMGKI +L+D A++T DNPR E+P I EI++G+ Sbjct: 362 EFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVITSDNPRGEEPRAIIDEIVNGVE 421 Query: 438 GFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 K NR EAI+ AI M K DV+VVAGKGHE I+ +K + D +II EIL Sbjct: 422 KDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKGHEDYQILK--DKTIHFDEREIIAEIL 478 >gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 486 Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 173/476 (36%), Positives = 265/476 (55%), Gaps = 27/476 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N+++ DSR +FV + G DGH +I +AI GA+ IV+ ++D Sbjct: 22 EVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENGAKVIVIQDDIEIKD------E 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 N I+ ++TRK L+L + Y +P + I+ VTGT+GK++ A ++ I + S + Sbjct: 76 NITIIKCNDTRKALALMGANYYD-NPSSKIKIIGVTGTNGKTTTAFMIKHILEES---NK 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI++F D ++ TTP + L + S + +GV + +E SSH L R+ G Sbjct: 132 KVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVMEVSSHSLALDRVYG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I+ G FTNL RDH+D+H+T + Y+ AK +LFE + I+ DD Y ++V+ + Sbjct: 192 IEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFE----RSRIKIVNVDDNYGRQVISDLN 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320 N C + K +++ + K D F+ +PGE+ +YNAL A Sbjct: 248 NLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLKEDEQFVLNIPGEYNIYNALGAIA 307 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTI 379 C +G+ + +E + VV GR E V + G I +DYAHT + LE ILK + Sbjct: 308 ACFKLGMPIKDIKSGIENV-VVLGRCERVAKEYNLGYEIIIDYAHTPDGLENILKTAKAF 366 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 T GR+I VFGCGGDRD+ KRP MGKI+ D+ADI IVT DNPRSE+P I +I GI Sbjct: 367 TKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVTSDNPRSEEPLSIIKDIEAGIDKD 426 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + NR EAI+ +I++ DV+V+AGKGHET ++ + E + +I++EIL Sbjct: 427 NYFVIENRKEAIKKSIDIALDNDVIVIAGKGHETYQVLKD-ETIHFDEREIVKEIL 481 >gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC 15579] Length = 482 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 172/487 (35%), Positives = 276/487 (56%), Gaps = 43/487 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D ++ L ++ +++I ++ DSR ++ G +FV I G DGH + +A GA+ Sbjct: 2 DLSLILKSLEYSFVKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGK 126 IV L+D S + I+ V ++RK L++ AS YG KH + I+ +TGT+GK Sbjct: 62 VIVCEK--DLEDLSC--YKDCTIIKVPDSRKALAIMASNYYGTPSKHIK-IIGITGTNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 ++ ++ I +++G +++G TI+++ + ++ TTP + L K + + V Sbjct: 117 TTSTFMMKAILEKAG---YKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKV 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH L R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ Sbjct: 174 DYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----Q 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++I DD+Y ++V+K+A G +V + G ++K C + + + + G +FD Sbjct: 230 NSVINIDDSYGEKVLKKA--LGNKV-TYG-------VEKSCDL-KAENLHMHSRGVEFDT 278 Query: 303 LFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352 +F +PG++ +YNAL + G C+ GI + E L + V PGR E V N Sbjct: 279 IFKNEKETIALNIPGKYNIYNALGSIGACLLEGISLQTIKEALGDISV-PGRCEIVTKNY 337 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + VDYAHT + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ DL+DI Sbjct: 338 DLGYDVIVDYAHTPDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDI 397 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DNPR+EDP I +++ GI +I R +AI+ A+E+ + DV+VVAGKGHE Sbjct: 398 AIITSDNPRTEDPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHE 457 Query: 471 TVHIVTN 477 I+ + Sbjct: 458 DYQILKD 464 >gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 501 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 179/513 (34%), Positives = 273/513 (53%), Gaps = 42/513 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ KD P + L+ P + KI+ + DSR I G ++A+ G + DGH FI Sbjct: 1 MKLLTLL-KDLPS--HTLTGSP----QVKISHLECDSRRILPGSCYIALKGTRADGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P+AI +GA A+V + + A + + V+++R +SL + G+ ++ + Sbjct: 54 PEAIRRGACAVVAEMPCTQEAREAGVS----WVEVNDSRLAVSLMGAAWNGRPSRHMTMI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-------RLTTPSPIYLA 171 VTGT+GK++ A + ++S L + IG + A DN TTP P+ L Sbjct: 110 GVTGTNGKTTTAYIAHSLLKQSWLRAGLIG------TIAYDNGEEITPSTHTTPGPLELE 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + G VS+E SSH LDQ R+ GI G FTNL +DH+DYH T + YF AK Sbjct: 164 HLLKEMYENGCRGVSMEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKA 223 Query: 232 RLFEELL----PKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 +LFE++ + P A+I DDAY + + + ++V G + +H Sbjct: 224 KLFEQMAQDTKSRRKPVAVINIDDAYGRRLAEMFSGR----MTVKTYGSALGADFRMLVH 279 Query: 287 NK----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + + + +GK + PL G+F +YN+L A I GI + +L+ + V Sbjct: 280 HATAKGSEYELEYKGKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQV 339 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR E T+ G +I++DYAHT ++LE + K ++ + S R+I VFGCGGDRD+GKRP+M Sbjct: 340 PGRLELF-THPGGAQIFIDYAHTPDALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLM 398 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQD 460 G A L+D IVT DNPRSE+P I ++I G+P + +R AI TAIE D Sbjct: 399 GAAAARLSDACIVTSDNPRSEEPLSIISQIAAGMPEGRYAIIPDRARAIATAIEQARLGD 458 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++++AGKGHE ++ G S ++ R + Sbjct: 459 IVLIAGKGHENYQELSTGRIDFSDAKEVRRNMF 491 >gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 465 Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 171/473 (36%), Positives = 264/473 (55%), Gaps = 35/473 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G++F AI G + DGH F+ +A+ +GA A+VV +D A R + Sbjct: 16 ITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVE-----RDVEAVQR----V 66 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150 + V+NTRK L+ A YG+ E++ V T + ++ I ++SG + G Sbjct: 67 IKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHA---GLM 123 Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 TI D TTP PI + L + G THV E SSH LDQ+R+ G + A Sbjct: 124 GTIQYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYRVWGTEFEA 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+DYH+ + YF AK RLF + K A++ DD Y K + A + G R Sbjct: 184 VIFTNLTQDHLDYHRDMEDYFRAKARLFFDY--KYRFAVVNTDDPYGKRL---ARDLGDR 238 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+ G +G+ + ++ + ++ +S +GK F F L G+FQ YN A + +G Sbjct: 239 ALTYGREGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ID + E L+ +HV PGRFE V + RG VDYAHT ++++ +L+ +R +T R+I Sbjct: 299 IDPNAIQEALKDVHV-PGRFE-VHRSDRGFIAVVDYAHTPDAMDNVLRTMRRLTKNRVIC 356 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443 VFG GG+RD+GKRP+MGK A +D+ I+T DNPR E+PE+I +I+ G+ +KG Sbjct: 357 VFGAGGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGVE---DKGKVK 413 Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI A+ + + D++ + GKGHE + G K D +++++ L Sbjct: 414 VIPDRREAIAEALNIAKEGDIVAILGKGHEDYQEI-KGVKYPFSDSEVLKKFL 465 >gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium botulinum A3 str. Loch Maree] Length = 483 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 273/474 (57%), Gaps = 42/474 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +++I ++ DSR ++ G +F+ I G DGH + +A GA+ IV L++ Sbjct: 15 IKEDKKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAKVIVCEK--DLEEL 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQR 139 S + I+ V ++RK L++ AS YG KH + I+ +TGT+GK++ ++ I ++ Sbjct: 73 S--YYKDCTIIKVPDSRKALAIMASNYYGNPSKHIK-IIGITGTNGKTTSTFMMKAILEK 129 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G +++G TI+++ + ++ TTP + L K + + V + +E SSH L Sbjct: 130 AG---YKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVMEVSSHSLY 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G++ FTNL +DH+D+H+T + YFN+K+ LF+ ++I DD+Y ++ Sbjct: 187 LDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA----QNSVINIDDSYGEK 242 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 V+K+A G ++ + G ++K C + + + + G +FD +F + Sbjct: 243 VLKKA--LGNKI-TYG-------VEKNCDL-KAENLHMHSRGVEFDTIFKNEKETIALNI 291 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHT 365 PG++ +YNAL + G C+ GI + E L + VPGR E V N + G + VDYAHT Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE IL R T GR+I V+GCGGDRD+ KRPIMGK+ +L+DIAI+T DNPR+EDP Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I +++ GI +I R +AIR A+E+ + DV+VVAGKGHE I+ + Sbjct: 412 TLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD 465 >gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens E str. JGS1987] Length = 484 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G++ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++EG + +F +PGE+ +YN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEGIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + FI + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens str. 13] gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Clostridium perfringens str. 13] Length = 484 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/465 (36%), Positives = 261/465 (56%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++EG + +F +PGE+ +YN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEGIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 486 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 268/490 (54%), Gaps = 37/490 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DLI E I+ L + ++ I +++ +S++ + G FV I G K DGH +I Sbjct: 1 MKLKDLI-----ENIDVLETNVKDF-DKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +AI GA +VV + ++ I + NTRK L++ ++ +G HP + Sbjct: 55 DEAIQNGACLVVVEEFFD----TSKIEGKIDYIKTSNTRKALAVMSANFFG-HPSKDFLL 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+S ++ I + + IG + I S + + TTP L K Sbjct: 110 IGVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQ 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + ++GV V +E SSH L+ R+ G FTNL +DH+D+H T + YF AK++LF Sbjct: 170 MKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF-- 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQV 291 ++ ADD + K +++ + SV Y +VCA + NK Q Sbjct: 228 --GMSKKRVVNADDRWGKRIIEMYPD------SVTYAKD--SDAQVCARNIKLFVNKNQF 277 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + G+ + +PG F +YN+L A+ CI++GI + + LE L VPGRFE V + Sbjct: 278 ELWYNGEKEEITLNIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVES 337 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N + I +DYAHT + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD Sbjct: 338 NEKF-TIVIDYAHTPDGLLNLMKTVDEVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMAD 396 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 IVT DNPR+EDP KI A+I+ GI ++ +R EAI+ AI+ + D +V+AGK Sbjct: 397 FVIVTSDNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGK 456 Query: 468 GHETVHIVTN 477 GHET I+ + Sbjct: 457 GHETYQILKD 466 >gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum ferrodiazotrophum] Length = 512 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 278/501 (55%), Gaps = 40/501 (7%) Query: 24 QWRER------------KINEVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGA 68 +W ER +++ +S DSR + G +F+ + DG L F+ +AIA+GA Sbjct: 14 KWMERFLPPVLEGDLPERLSGISDDSRKVSPGDLFLL----RMDGPLQEKFLDEAIAKGA 69 Query: 69 EAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124 +V S + S+ + P+ VV+N ++ + AS YG+ + ++ VTGT+ Sbjct: 70 ALLVASRRHLPSVLERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTN 129 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + V+ + RSGL + IG + + TTP ++L ++ + G+ Sbjct: 130 GKTTSSFLVRSMLDRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLV 189 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES- 242 +S+E SSH L Q R+ G A FTNL RDH+DYH+T + YFNAK RL + P S Sbjct: 190 AMSMEVSSHALSQDRVAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSL 249 Query: 243 -PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKF-IH-LKKVCAIHNKQQVTISVEGK 298 PA+I ADD Y + + ++ A R+L+ G+ + IH L+ V ++ + +SVEG+ Sbjct: 250 PPAVINADDPYGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGA-LSVEGR 308 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357 LPG+F + N + A G +A+GI V ++ L VPGRFE GG+ Sbjct: 309 RISVDSTLPGDFNLQNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFERANP---GGKF 365 Query: 358 -IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT ++L+ IL +R +T GR+I VFGCGGDRD+GKRP MGK+A +L+DI +VT Sbjct: 366 AVIVDYAHTDDALKNILSALRPLTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVT 425 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDPE I EI G+ ++ + +R AI A+ + D +++AGKGHE Sbjct: 426 SDNPRTEDPEFIIDEIEPGLNMTGRSYLREVDRRTAIARALSLAQPGDAVLIAGKGHEPY 485 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 I+ + + D + REIL Sbjct: 486 QIIGHAKSHFD-DRETAREIL 505 >gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens SM101] Length = 484 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 169/465 (36%), Positives = 260/465 (55%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + DF +PGE+ VYN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLEEVE-DFSINIPGEYNVYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMNKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus DSM 2032] Length = 1011 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 259/485 (53%), Gaps = 44/485 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + ++SDSR + G +FVA+ G K DG +IP+AI +G A+VV + ++ Sbjct: 26 QPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAIGKGCLAVVVDVDEGVDEW----- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N P+L+VD+ L A+ G +P + ++A+TGT+GK++ + ++++ SG Sbjct: 81 -NVPVLLVDDCPAALGELAAAWNG-YPASQMQLVAITGTNGKTTCSWLIEEMLVASGFRP 138 Query: 145 FQIGPTSTISSFA------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG + A QD LTTP P+ L L ++ GVTHV +E SSH L Q R Sbjct: 139 GVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHALQQQR 198 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKE 255 L + FTNL RDH+DYHQ+ + YF AK +LF + L ++ A++ + Sbjct: 199 LGSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEGCDWG 258 Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A +V+ G G + ++ + + + G + +F PL GE+ V N Sbjct: 259 GLLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAEVNFASPLTGEYNVLN 318 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLE 370 L AAG+ + +G+ LE L ++ VPGR E V G ++VDYAHT ++L+ Sbjct: 319 VLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAHTPDALD 378 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+N++ +T+GR++ VFGCGGDRD+GKRP+MG++A LAD +VT DNPR+E PE I Sbjct: 379 NVLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEAPEAIID 438 Query: 431 EIIHGIP--------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EI+ G+ G+ +R AI A + D +++AGKGHE Sbjct: 439 EIVAGVEAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPGDSVLLAGKGHE 498 Query: 471 TVHIV 475 T I+ Sbjct: 499 TYQII 503 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + V +DSR ++ G IFVA+ G DGH +I A Q A AIV + +R Sbjct: 543 RVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQRAGAIVA------EWMPPRMR 596 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQI 136 + V ++ + L A+ Y + N + A+TG+SGK++V V I Sbjct: 597 PEVLYIEVKDSLRALGDLAA--YRRRLLNGTIKVAAITGSSGKTTVKEMVASI 647 >gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 524 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 165/416 (39%), Positives = 245/416 (58%), Gaps = 16/416 (3%) Query: 83 SATIRSNTPILVV---DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138 SAT +NTP V N ++ SR Y K P+ + AVTGT+GK+SV F +QI Q Sbjct: 112 SATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 171 Query: 139 RSGLSSFQIGPTST-ISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 SG ++ IG T I++ +DN LTTP L L ++S+ V +++EASSHG+D Sbjct: 172 NSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHGID 231 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R+ G++ A +FTN +DH+DYH++ YF AK RLF E+LP+ I+ AD Sbjct: 232 QYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINEYHA 291 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++K A +V++ G G I L + N Q +TI + + ++ FP+ G+FQ YN Sbjct: 292 LLKIAEKRSNKVITYGKTGSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQAYNL 351 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + G++ + + KL PGR E V + +VDYAHT ++L+ L + Sbjct: 352 LCAIGIVTSSGLNYREI--SIGKLVSPPGRMEKVQPFA-----FVDYAHTPSALKQALLS 404 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ + +I++VFGCGG+RD+ KR MGKIA AD I+TDDNPR EDP KIR +I+ Sbjct: 405 LKWHFNKKIVLVFGCGGNRDRKKRSEMGKIAQMYADKVIITDDNPRDEDPAKIRHDILLY 464 Query: 436 IPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 P +E G+R EAI I++ N+ +L+VAGKGHE I+ N + S D ++I+ Sbjct: 465 CPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKGHEKFQIIGNQTFEFS-DVEVIK 519 >gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens D str. JGS1721] Length = 484 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 261/465 (56%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + +F +PGE+ +YN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V + I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKKLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1; AltName: Full=Meso-A2pm-adding enzyme 1; AltName: Full=Meso-diaminopimelate-adding enzyme 1; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium acetobutylicum ATCC 824] gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum EA 2018] Length = 482 Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 259/475 (54%), Gaps = 45/475 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ ++ DSR + +F I G DGH FI +A+ +GA+ IV + Sbjct: 22 EIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKGADVIVCTKV-------PKKLP 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N ++ V++ RK +++ + Y H ++ +TGT+GK++ ++ + + SG ++ Sbjct: 75 NCTVVKVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTSTYMMKSMLESSG---YK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI+++ D ++ TTP + L K S + + + +E SSH L R+ GI Sbjct: 132 VGLIGTIANYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVMEVSSHSLYLDRVYGI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL +DH+D+H+T + Y+ AKM LF+ +II DD Y + V K + Sbjct: 192 VFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKN----SKRSIINIDDKYGERVFK---D 244 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVY 313 AG ++ G K A + + ++ G +FD + +PG++ VY Sbjct: 245 AGNDKITYGLTEK--------ADLKAENLKMTSRGTEFDLCYRGLREHVKINIPGKYNVY 296 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMI 372 NAL + C+ GI V + L KL VPGR E V N+ + +DYAHT + LE + Sbjct: 297 NALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAHTPDGLEKV 356 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK R T GR+I VFGCGGDRD+ KRPIMG+I L+DIA++T DNPRSE+PE+I +I Sbjct: 357 LKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVITSDNPRSENPEEIIKDI 416 Query: 433 IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + GI ++ NR EAI+ A+ M K DV+V+AGKGHE I+ G+K + D Sbjct: 417 VQGIKTDNYVIVENRKEAIKKAMLMAKKDDVIVLAGKGHENYQIL--GDKTIHFD 469 >gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Magnetococcus sp. MC-1] Length = 495 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 267/488 (54%), Gaps = 25/488 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I+QL++ + E I ++ +DSR + G +F A+ G++ DG +IPQA+ A AI Sbjct: 12 IDQLTV--LGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEAAAI--- 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132 L D S ++ NTP L+ + R+ L+ A+ YG+ + + + +TGT+GKS+VAS Sbjct: 67 ----LHDGSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVASM 122 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVE 188 I + SG ++G ST+ + +L TTP I L L+ + + +E Sbjct: 123 CATILRHSGQ---RVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVME 179 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASSH LDQHRL GI+ FTNL RDH+DYH AYF AK +LF E PK A++ + Sbjct: 180 ASSHALDQHRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFREYHPKL--ALLPS 237 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DA+++ + G V + G + ++ K++ A + + + + + P Sbjct: 238 SDAHAQALNSICREQGVAVQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMAP 297 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + NAL AA C+ + +D V E L + V GR + + + + VD+AHT + Sbjct: 298 GRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAGRVQAI-HEGQNFAVLVDFAHTPD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L+ +L ++R +T G++ VVFGCGGD+D GKRP MG+ A LA I+TDDNPRSEDP Sbjct: 357 ALDRLLSSLRPLTPGKLWVVFGCGGDKDSGKRPHMGECAGRLAHFPIITDDNPRSEDPAA 416 Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 IRA+I+ G E +R +AI A+ D +V+AGKGHE I +G S D Sbjct: 417 IRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKGHEQSQIGAHGATPFS-D 475 Query: 486 CDIIREIL 493 ++ R+ L Sbjct: 476 AEVARQAL 483 >gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens C str. JGS1495] gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens NCTC 8239] Length = 484 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + +F +PGE+ +YN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens ATCC 13124] Length = 484 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + +F +PGE+ +YN+ Sbjct: 245 IEERGLKTKVSAFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Tepidanaerobacter sp. Re1] Length = 482 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 170/471 (36%), Positives = 263/471 (55%), Gaps = 46/471 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + I + +S+ I+ G IFVAI G DGH FIP+A+ +GA ++ A L Sbjct: 19 YTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALERGAGVVIGEKALDL----- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 + V ++RK L+L ++ YG +P + ++ VTGTSGK++V + ++ + G Sbjct: 74 ---GGKLYIRVKDSRKALALSSAWFYG-YPADKLKLIGVTGTSGKTTVTYLISEMLKDIG 129 Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + + IG TI + + +L TTP + L + S + + + ++++E SSH L Sbjct: 130 ICTGIIG---TIGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAMEVSSHSLKLQ 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R++GIK G FTNL +DH+D+H+T + YFN+K +LF + A+I DD Sbjct: 187 RVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQ----SKQAVINIDD------- 235 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PL----PG 308 +G R+LS+ ++ + A + + ++ G +D +F P+ PG Sbjct: 236 ----ESGKRLLSIINIPRYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYSTPG 291 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F VYN+L A +A+G ++ L+K VPGRFE V N++G + VDYAH + Sbjct: 292 LFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELV-ENNQGIIVIVDYAHKPDG 350 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ +L IR +G+II VFGCGGDRD+GKRPIMGKI+ +L+D I+T DNPRSE PE I Sbjct: 351 LKNVLLTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITSDNPRSEKPEAI 410 Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +I GI G + + R EAI+ AI + K D +++AGKGHET I + Sbjct: 411 IEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKGHETYQIFND 461 >gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [uncultured Desulfobacterium sp.] Length = 537 Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 170/486 (34%), Positives = 270/486 (55%), Gaps = 55/486 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + I V S+ ++ IFVA+ G++ DGH F+ AI +GA AIVV Sbjct: 48 YLDPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKK-------- 99 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 T++ ++ I+ V+NTRK L A+ YG E I+ +TGT+GK++ A ++ I Q +G Sbjct: 100 TVK-DSIIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGF 158 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG + S + +TTP + L K LS + GVTHV +E SSH +D R++G Sbjct: 159 KTGVIGTINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVSSHAIDLFRIEG 218 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA--IIYADDAYSK-- 254 + FTNL +DH+DYH+ ++Y+ K +LF E L PK+ A +I DD K Sbjct: 219 CFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKAL 278 Query: 255 ------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + +K ++ C + + + + +K A+ + + T S+E + L G Sbjct: 279 SGILSTKCIKTGSDSECDIYASNSRIDTLGIK---ALISTPESTFSIESE-------LVG 328 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + + N + AAG+ +GI S ++ + ++ L V+PGR E + N G +YVDYAHT ++ Sbjct: 329 KHNIENIMSAAGVASGLGISSEIIKKGIKSLSVIPGRLEKI-NNEAGISVYVDYAHTPDA 387 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ +L ++R I GR+I VFGCGGDRD+ KRP+MG++A DL+D A++T DNPR+EDP +I Sbjct: 388 LKNVLLSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEI 447 Query: 429 RAEIIHGI-------------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +II GI G++ + +R +AI I + DV+++AGKGH Sbjct: 448 INQIITGIKRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKGH 507 Query: 470 ETVHIV 475 ET ++ Sbjct: 508 ETYQLI 513 >gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens B str. ATCC 3626] Length = 484 Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G++ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + +F +PGE+ +YN+ Sbjct: 245 IEERGLKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium tetani E88] Length = 485 Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 171/479 (35%), Positives = 270/479 (56%), Gaps = 29/479 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I + DSR+I+ IF AI G DGH FI AI +GA+ IV + ++ I Sbjct: 20 EIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKGAKVIVFDKGFENENMYKDI 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V N+RK L++ AS YG K ++ VTGT+GK++ ++ I + +G Sbjct: 80 ----TFIKVKNSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTSTFMIKSILEEAG--- 132 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 F++G TI ++ D ++ TTP + + K + GV + +E SSH L R+ Sbjct: 133 FKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVMEVSSHSLYLDRVY 192 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI+ G FTNL +DH+D+H+T + Y+N+K+ LF+ + ++I DD Y + ++K Sbjct: 193 GIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSIN----SVINIDDNYGERILKEI 248 Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + + K+ LK + +H++ + T+ +G +PGE+ V NAL + Sbjct: 249 EE---KTFTYSIK-KYSDLKAESVRLHSRGGEFTVDFKGNKEKINIHIPGEYNVSNALGS 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIR 377 C+ GI ++ LEKL VPGR E V + G + VDYAHT + L+ +L+ R Sbjct: 305 ILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAHTPDGLDNVLRTAR 364 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 T G++I V+GCGGDRD+ KRPIMG+I +L+D+AI+T DNPR+E+P I +I+ G+ Sbjct: 365 DFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILTSDNPRTEEPFSIIDDIVKGVT 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 +I +R EAI+ A+ + K DV+VVAGKGHE I+ +K + D ++I+EI+ Sbjct: 425 KDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKGHEDYQILK--DKTIHFDEREVIKEII 481 >gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium perfringens CPE str. F4969] Length = 484 Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 260/465 (55%), Gaps = 30/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + D+R I+ G FV + G K DGH FI AI +GA+ ++V S+Q+ Sbjct: 19 EESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAKTLIVQEDVSVQE---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+ V +TRK L++ +S +G K I+ +TGT+GK++ A ++ I +++G Sbjct: 75 ---DITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAFIIKSILEKAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F G TI+++ + ++ TTP L + + GV + +E SSH L+ R+ Sbjct: 130 -FMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVSSHSLELDRV 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G++ G FTNL RDH+D+H+T + Y+NAK +LFE + + +II DD Y ++K Sbjct: 189 YGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFE----RSNHSIINLDDPYGANIVKD 244 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 G + S+ + F + + + N + +++E + +F +PGE+ +YN+ Sbjct: 245 IEERGVKTKVSTFSIEKESDFKAFE-IKSHSNGSEFKVNLESIE-EFSINIPGEYNIYNS 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILK 374 L + I + E L + V+PGR E V I +DYAHT + LE IL Sbjct: 303 LGCIICAYNLNIPMDKIKEGLSDV-VIPGRCELVAKEKNLPYSIIIDYAHTPDGLENILS 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T R+I VFGCGGDRD+ KRP MGKI +L+DIAI+T DNPRSE+P I +I+ Sbjct: 362 TVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIAIITSDNPRSEEPMDIINDIVK 421 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F+ + NR EAIR A+ M + DV+V+AGKGHET I+ + Sbjct: 422 PLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHETYQILKD 466 >gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia sp. wRi] gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia sp. wRi] Length = 475 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 174/470 (37%), Positives = 268/470 (57%), Gaps = 26/470 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86 +I V+ + + I+ G++FV + E ++I Q ++ GA+AI+ S + + S I Sbjct: 18 EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73 Query: 87 -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 R + N ++ S SR Y K P+ + AVTGT+GK+SV F +QI Q SG ++ Sbjct: 74 TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133 Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T + + N LTTP L L +S V H+ +E+SSHG+DQ+R+ G Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +KL A +FTN +DH+DYH++ Y K RLF E+LP+ AI+ AD ++K A Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +V++ G +G I L + + N Q +T+ ++ + ++ FP+ G+FQ YN L A G+ Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G++ + +EKL PGR E V + +VDYAHT ++L+ L +++ + Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 +II+VFGCGG+RDQ KR MGKIA AD I+TDDN R EDP KIR +I+ P +E Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALE 420 Query: 442 KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G R EAI +++ N+ +L+VAGKG+E I+ N + S D ++I+ Sbjct: 421 IGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 469 >gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii OSU 85-389] Length = 474 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 167/471 (35%), Positives = 255/471 (54%), Gaps = 31/471 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + +S++S+ I+A F AI ++G+ FI A+ +GA ++ + Sbjct: 9 FEKHNVKGLSNNSKTIKANDAFFAI----KNGNDFIADALEKGAALVITDDKKN------ 58 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ V++ ++ L Y K P+ ++AVTGT+GKSSV S++ QI G + Sbjct: 59 ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115 Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T + F DN LTT + K L+ G+ +++ EASSHGLDQ R Sbjct: 116 ASIG-TIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQR 174 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L +K+ FT+ +DH+DYH T++ Y AK++LF + L K+ AI+ +D K + Sbjct: 175 LGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKD 234 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + L VG G + K + Q + + K++DF P+ G FQ N L+A Sbjct: 235 YLDKHKIKYLCVGANGN-CKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIA 293 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 D + V+ L K+ V GR E V + I++DYAHT ++LE L ++ Sbjct: 294 GLSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKN 349 Query: 379 ITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + G++ V+FGCGG+RD KR +MGKIA +AD IVTDDNPR EDP+ IR EII GI Sbjct: 350 IKAKGGKLSVIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGI 409 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +IE +R EAI+ I L K D+L++AGKGHE I+ G++K+ D Sbjct: 410 VTTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQII--GDEKIRFD 458 >gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia bellii RML369-C] Length = 474 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 166/471 (35%), Positives = 255/471 (54%), Gaps = 31/471 (6%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + + +S++S+ I+A F AI ++G+ FI A+ +GA ++ + Sbjct: 9 FEKHNVKGLSNNSKTIKANDAFFAI----KNGNDFIADALEKGAALVITDDKKN------ 58 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ V++ ++ L Y K P+ ++AVTGT+GKSSV S++ QI G + Sbjct: 59 ---TTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115 Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T + F DN LTT + K L+ G+ +++ EASSHGLDQ R Sbjct: 116 ASIG-TIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQR 174 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L +K+ FT+ +DH+DYH T++ Y AK++LF + L K+ AI+ +D K + Sbjct: 175 LGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKD 234 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + L VG G + K + Q + + K++DF P+ G FQ N L+A Sbjct: 235 YLDKHKIKYLCVGANGN-CKITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIA 293 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 D + V+ L K+ V GR E V + I++DYAHT ++LE L ++ Sbjct: 294 GPSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKN 349 Query: 379 ITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + G++ ++FGCGG+RD KR +MGKIA +AD IVTDDNPR EDP+ IR EII GI Sbjct: 350 IKAKGGKLSIIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGI 409 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +IE +R EAI+ I L K D+L++AGKGHE I+ G++K+ D Sbjct: 410 VTTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQII--GDEKIRFD 458 >gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii CIP 102972] Length = 495 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 248/457 (54%), Gaps = 16/457 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + DSRHIQAG FVAI+G+ DG FI +AI QGA ++ + S R Sbjct: 27 VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ ++ K LS A RLYG H +++AVTGT+GK++++ + Q G + +G Sbjct: 87 VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T S Q TT + + + L L+ QG + ++E SSHGL Q R+ + AG Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 F+NL RDH+DYH T AY +AK+ LF E ++ AII DD EV R + Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQ--AIINVDD----EVGARWAQQLQHAV 260 Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 V K + + A+ + + +TI V+G PL GEF N ++A + Sbjct: 261 GVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLL 320 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G + +L +L V GR E + ++ VDYAHT ++LE L+ +R G+ Sbjct: 321 SLGFELDALLAAAPQLQPVLGRMELFQAPGKA-KVVVDYAHTPDALEKALRALRVHCQGQ 379 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + +FGCGGDRD GKRP+M IA AD I+TDDNPRSEDP+ I +++ G+ P Sbjct: 380 LWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSEDPQAIVNDMLAGLKTPQHAS 439 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + NR +A+RTA+ +QD++++AGKGHE ++ + Sbjct: 440 VEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAH 476 >gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio furnissii NCTC 11218] Length = 495 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 164/457 (35%), Positives = 246/457 (53%), Gaps = 16/457 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + DSRHIQAG FVAI+G+ DG FI +AI QGA ++ + S R Sbjct: 27 VTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAITQGANLVLAQACPQHPHGSVEERHA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ ++ K LS A RLYG H +++AVTGT+GK++++ + Q G + +G Sbjct: 87 VPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNGKTTISQLIAQWIDLLGHRAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T S Q TT + + + L L+ QG + ++E SSHGL Q R+ + AG Sbjct: 147 TGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEYTAMEVSSHGLVQGRVKCVPFDAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 F+NL RDH+DYH T AY +AK+ LF E ++ AII DD EV R + Sbjct: 207 FSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQ--AIINVDD----EVGARWAQQLQHAV 260 Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 V K + + A+ + + +TI V+G PL GEF N ++A + Sbjct: 261 GVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLRAPLIGEFNASNLMLALATLL 320 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G + +L +L V GR E + ++ VDYAHT ++LE L+ +R G+ Sbjct: 321 SLGFELDALLAAAPQLQPVLGRMELFQAPGKA-KVVVDYAHTPDALEKALRALRVHCQGQ 379 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + +FGCGGDRD GKRP+M IA AD I+TDDNPRSEDP+ I +++ G+ Sbjct: 380 LWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSEDPQAIVNDMLAGLKAPQHAN 439 Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR +A+RTA+ +QD++++AGKGHE ++ + Sbjct: 440 VEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAH 476 >gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Mitsuokella multacida DSM 20544] Length = 512 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 169/469 (36%), Positives = 253/469 (53%), Gaps = 29/469 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSA 84 R+ I + DSR +Q G +FV I G DGH FIPQA+A GA AIV + + + A Sbjct: 33 RDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAGASAIVTTREDVEVPEGIA 92 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 +R +D + + +R ++ +TGT+GK++ + + I +++G Sbjct: 93 VLRVKELQPALDTIVPYFHDYPARKM-----RVVGITGTNGKTTTSYITRAILRKAG--- 144 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++G TI +D L TTP + L L+ + +G+ +V +E SSH LDQ+R+ Sbjct: 145 YKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVMEVSSHALDQNRVA 204 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEV 256 GI+ FTNL +DH+DYH+T + Y AK +LF+ + + A++ DDA + Sbjct: 205 GIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKTAVVNIDDAVGATM 264 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314 + AH A C+ L+ + + +H N + + E + + G F VYN Sbjct: 265 L--AH-AKCKHLTYAIEKEADLRATDILVHANGAEFVLHHESFGEMPLKLHITGIFNVYN 321 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 + A G +A ID+A++ E LE VPGRFE V + I VDYAHT + +E +LK Sbjct: 322 VMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKA-GQDFSIIVDYAHTPDGVENVLK 380 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R I RII VFGCGGDRD+ KRPIMG++A +LAD+ I T DNPR+EDPE I +++ Sbjct: 381 TARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSDNPRTEDPEFILSQVEE 440 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ I +R AI AIEM K D++V+ GKGHE I+ + Sbjct: 441 GVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKGHENYQILKD 489 >gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 496 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 168/468 (35%), Positives = 264/468 (56%), Gaps = 27/468 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ + + ++ ++FV + E+G + A AI+ S FSA Sbjct: 44 EIKGVTCNPKKVKEDYLFVCV---SEEGERCVG---GIKASAIIAS-------FSAIPAQ 90 Query: 89 NTPILVV-DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I + N R+ SR Y K + + AVTGT+GK+SV F +QI Q +G ++ Sbjct: 91 GAEIYIFYPNPREIYGKIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGCNAAS 150 Query: 147 IGPTST-ISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T +++ +DN LTTP L L ++S+ + H+++EASSHG+DQ+R+ G++ Sbjct: 151 VGTLGTCVNNERKDNNSNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRIHGLE 210 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L A +FTN +DH+DYH+ YF AK RLF E+LP+ ++ +D ++K A Sbjct: 211 LNAAAFTNFSQDHLDYHKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKIAEKR 270 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +V++ G G I L + + Q +TI + + + +P+ G+FQ YN L A G+ I Sbjct: 271 SNKVITYGKTGSDITLLRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAIGIVI 330 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A +D + ++K +PGR E V + +VDYAHT ++L+ L +++ S + Sbjct: 331 ASKLDYQRIC--IDKFVSLPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHFSKK 383 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 +++VFGCGG+RDQ KR MGK+A AD IVTDDNPR EDP KIR +I+ P +E G Sbjct: 384 VVLVFGCGGNRDQAKRAKMGKMAKMYADKVIVTDDNPRDEDPAKIRYDILLCCPNALEVG 443 Query: 444 NRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +R EAI+ I + ++ VL+VAGKGHE I+ N + S D ++I+ Sbjct: 444 DRREAIKKGINIAYDENMVLLVAGKGHEKFQIIGNKTFEFS-DVEVIK 490 >gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 343 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 152/314 (48%), Positives = 193/314 (61%), Gaps = 3/314 (0%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP P L +AL+ L+ +TH ++EASSHGLDQ RLDG+KL A FTNL RDH+DYH Sbjct: 12 LTTPDPADLHEALAELAENSITHAAMEASSHGLDQFRLDGVKLQAAGFTNLTRDHLDYHG 71 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 QAY AK+RLF +LLP++ A+I AD RVL G G + LK Sbjct: 72 DMQAYLAAKLRLFTDLLPEDGVAVINAD--CPVAAQVAQAAGSRRVLRFGRAGAELALKD 129 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + Q + + V G PL G FQ NAL A GL I G ++ + LE L Sbjct: 130 IRPDSHGQVLDLDVLGHSATIRLPLAGTFQAANALAALGLVIGCGGNALAAINALESLTE 189 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 +PGR + V + I+VDYAHT ++LE +L + +GR++VVFGCGGDRD GKRP Sbjct: 190 IPGRLQKV-ADKDSAPIFVDYAHTPDALETVLTALLPHATGRLLVVFGCGGDRDPGKRPQ 248 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 MG+IA LADI +VTDDNPRSEDP IRA I+ G +E +R AIR A+ +L + DV Sbjct: 249 MGEIAARLADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSLLRQGDV 308 Query: 462 LVVAGKGHETVHIV 475 LVVAGKGHE+ IV Sbjct: 309 LVVAGKGHESGQIV 322 >gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio africanus str. Walvis Bay] Length = 485 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 267/492 (54%), Gaps = 32/492 (6%) Query: 23 MQWRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W+E R V + S + AG +FVA+ G + DG FIP A+A+GA IV + Sbjct: 6 VSWKELLAAVRAGRPVRAHSGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGV 65 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ 135 L + AT R ++ D+ R+ L A +G H ++ VTGT+GK++++ ++Q Sbjct: 66 RLPE-GATAR----LVTHDDPRQALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQ 120 Query: 136 ICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G S ++G T+S F+ D LTTP + L + L+ + GV +E SS Sbjct: 121 LF---GGSGRKVGVLGTVSYRWPGFSMDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSS 177 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADD 250 H LDQ R+ G+ A TNL +DH+DYH+ + YF AK RLF EL PKE A ++ +D Sbjct: 178 HALDQQRVAGLAYDAAVLTNLTQDHLDYHKDMETYFQAKARLFREL-PKEGKAWVVNYED 236 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFP 305 Y +++ +AG VL G + + + + A ++ + EG+ F+ + P Sbjct: 237 PYGLRLLREGLSAGRSVLGYGLETPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSP 296 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G N L A G+ +G+ + ++ L V GR E V TN G ++VDYAHT Sbjct: 297 LVGRHNAMNLLTAMGVGFKLGLRES-DMQALAGFTGVSGRLERV-TNPHGLNVFVDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ + R++ VFGCGG+RD+ KRP+MG+ AD+A++T DNPR EDP Sbjct: 355 PDALVNVLSAVKALGVRRLVCVFGCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDP 414 Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I ++ G+ G + + +R +AI A+E L +D LVVAGKGHE + + + Sbjct: 415 LAIIEDVKPGLSGCARVVIEPDRRKAIALALEGLTAEDALVVAGKGHEPYQQIGDVKHPF 474 Query: 483 SVDCDIIREILG 494 S D ++RE+LG Sbjct: 475 S-DQQVVRELLG 485 >gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. Ex25] Length = 493 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 19/478 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA++G+ DG FI AI QGA A++ + + I + Sbjct: 25 VSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D + LS A +LY +++ VTGT+GK+++ + Q + G + +G Sbjct: 85 VPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 144 Query: 150 TST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + + Q TT + + + K LS L++Q T+ ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLDNLQQAAN-TTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALSFAAG 203 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T + Y NAK+ LF + + AII DD + NA Sbjct: 204 VFTNLSRDHLDYHGTMEEYANAKLELFTQ--HQCERAIINVDDEVGHAWATQLSNA---- 257 Query: 268 LSVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLC 322 ++V + + A + + +TI +GK PL GEF N ++A Sbjct: 258 IAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLHAPLIGEFNATNLMLAFATL 317 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++G D +LE +L V GR E T R ++ VDYAHT ++LE L+ +R G Sbjct: 318 LSLGKDKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEG 376 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441 ++ +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP +I +++ G+ E Sbjct: 377 QLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLSGLSKPAEA 436 Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 + +R +A+ A+E + +D++++AGKGHE I NGE D + ++LGL L Sbjct: 437 IVQHDRFKALSYAVENASPKDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGLSL 493 >gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sputigena ATCC 35185] Length = 968 Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 250/465 (53%), Gaps = 28/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI ++ DSR + G +FVAI G DGH FI QA+ +GA AI+ + + +A + Sbjct: 25 KIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKGACAILTEREIEIPEGAAAV-- 82 Query: 89 NTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V N L + Y I+ +TGT+GK++ + + I + +G ++ Sbjct: 83 ----LRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTTTSYMTRAILREAG---YK 135 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI +D L TTP + L + L+Y++ +G+ V +E SSH LDQ+R+ GI Sbjct: 136 VGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNRVAGI 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKR 259 + FTNL +DH+DYH+T + Y AK RLF+ + KE + DD + E M Sbjct: 196 EFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGETM-L 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318 AH A C L+ + + + +H + ++T++ D + G F VYN + A Sbjct: 255 AH-AKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLSLGVTGIFNVYNVMSA 313 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +A I + LE VPGRFE V + I VDYAHT + LE IL R Sbjct: 314 VGAALAERIAPEAIKRALEAFKSVPGRFELVDAG-QAFSIIVDYAHTPDGLENILNTARE 372 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 I +GRI+ VFGCGGDRD+ KRPIMG+IA L+D+ +VT DNPR+EDP +I E+ G+ Sbjct: 373 IAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARILDEVEVGVLE 432 Query: 439 FI-----EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I EK +R AI A+ + K D++++AGKGHE I+ + Sbjct: 433 KIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQILKD 477 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 42/373 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++ +D+R I AG +FVA+ G + DG F QA+ +GA ++V ++ A + Sbjct: 526 SDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEAKLPKTG 581 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +L +T A+ K ++A+TG++GK++ L++ +G Sbjct: 582 VVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD----------LTAAVLGAC 631 Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ--HRLDGIKLI 205 + A +N + P L+ L + + VE GL Q Sbjct: 632 LLVQKTAANYNNEIGLP--------LTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPT 683 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H++ + + AK L E + P I+ ADDA M+ AG Sbjct: 684 VAIVTNVGEVHMELLGSIENIARAKAELVEAVEPG-GTVILNADDARVL-AMREKAKAGV 741 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVA 318 RV++ G + ++ V + + +E K+ + P+PG V NAL A Sbjct: 742 RVVTFGLS-RDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 +G+ A V L V P + G +V+ A+ ++ S LK + Sbjct: 801 IAAARVLGLSLADVRRGLA---VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTL 857 Query: 377 RTITSGRIIVVFG 389 + +GR I V G Sbjct: 858 AEMFAGRKIAVLG 870 >gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 12G01] Length = 493 Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 259/475 (54%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA++G+ DG FI AI QGA A + + + I + Sbjct: 25 VSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D + LS A +LY +++ VTGT+GK+++ + Q + + +G Sbjct: 85 VPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAVMGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + Q TT + + + K LS L++Q T+ ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y NAK+ LF + K AII DD + + NA + Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKR--AIINVDDEVGHQWASQLSNA--IAI 260 Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 S+ +F I +V + + +TI +GK + PL GEF N ++A + Sbjct: 261 SLKPNTEFESAIWATEVS--YAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++GI+ +LE +L V GR E T R ++ VDYAHT ++LE L+ +R G+ Sbjct: 319 SLGIEKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEGQ 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP +I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ AIE + D++++AGKGHE I NGE D + ++LGL Sbjct: 438 VQHDRFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491 >gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio fructosovorans JJ] Length = 487 Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 253/476 (53%), Gaps = 28/476 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ S + +G +FVA G EDG FIP A+A+GA IV +L + + + Sbjct: 24 VAGHSAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPE-----GAKAAL 78 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + VD RK L L A+ G + ++ VTGT+GK++V+ ++++ +G ++G Sbjct: 79 VTVDEPRKALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGK---KVGVL 135 Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T++ +D LTTP + + ++L+ +++ G +EASSH LDQ RL G+ A Sbjct: 136 GTVAYRWPGVTRDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAA 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+DYH+ + YF AK +LF E LP + A++ DD + ++K A Sbjct: 196 GVFTNLTQDHLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGY 255 Query: 267 VLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 L+ G L H++ Q + + F+ P+PG N L A G + Sbjct: 256 GLTKAPAGFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALT 315 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ + L H PGR E + N+ G ++VDYAHT ++LE +L R T+GR+ Sbjct: 316 LGLPYE-TFDALADCHGAPGRLERI-PNASGLTVFVDYAHTPDALENVLGAAREFTAGRL 373 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----- 439 VFGCGGDRD+ KRP M + LAD+A++T DNPR E P I I PG Sbjct: 374 FAVFGCGGDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAI---IEDAKPGLAKARK 430 Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I + +R AI A++ + +DVLV+AGKGHE+ + + + S D ++RE+ G Sbjct: 431 VIIEPDRRRAIALALDAMRPEDVLVIAGKGHESYQQIGDVKHPFS-DAAVVRELTG 485 >gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase ;UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Selenomonas sputigena ATCC 35185] Length = 966 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 250/465 (53%), Gaps = 28/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI ++ DSR + G +FVAI G DGH FI QA+ +GA AI+ + + +A + Sbjct: 23 KIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKGACAILTEREIEIPEGAAAV-- 80 Query: 89 NTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V N L + Y I+ +TGT+GK++ + + I + +G ++ Sbjct: 81 ----LRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTTTSYMTRAILREAG---YK 133 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI +D L TTP + L + L+Y++ +G+ V +E SSH LDQ+R+ GI Sbjct: 134 VGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVMEVSSHALDQNRVAGI 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKR 259 + FTNL +DH+DYH+T + Y AK RLF+ + KE + DD + E M Sbjct: 194 EFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEGKTAVVNDDDAAGETM-L 252 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318 AH A C L+ + + + +H + ++T++ D + G F VYN + A Sbjct: 253 AH-AKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLSLGVTGIFNVYNVMSA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +A I + LE VPGRFE V + I VDYAHT + LE IL R Sbjct: 312 VGAALAERIAPEAIKRALEAFKSVPGRFELVDAG-QAFSIIVDYAHTPDGLENILNTARE 370 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 I +GRI+ VFGCGGDRD+ KRPIMG+IA L+D+ +VT DNPR+EDP +I E+ G+ Sbjct: 371 IAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNPRTEDPARILDEVEVGVLE 430 Query: 439 FI-----EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I EK +R AI A+ + K D++++AGKGHE I+ + Sbjct: 431 KIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQILKD 475 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 151/373 (40%), Gaps = 42/373 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++ +D+R I AG +FVA+ G + DG F QA+ +GA ++V ++ A + Sbjct: 524 SDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEAKLPKTG 579 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +L +T A+ K ++A+TG++GK++ L++ +G Sbjct: 580 VVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD----------LTAAVLGAC 629 Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ--HRLDGIKLI 205 + A +N + P L+ L + + VE GL Q Sbjct: 630 LLVQKTAANYNNEIGLP--------LTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAPT 681 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H++ + + AK L E + P I+ ADDA M+ AG Sbjct: 682 VAIVTNVGEVHMELLGSIENIARAKAELVEAVEPG-GTVILNADDARVL-AMREKAKAGV 739 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVA 318 RV++ G + ++ V + + +E K+ + P+PG V NAL A Sbjct: 740 RVVTFGLS-RDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 +G+ A V L V P + G +V+ A+ ++ S LK + Sbjct: 799 IAAARVLGLSLADVRRGLA---VPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTL 855 Query: 377 RTITSGRIIVVFG 389 + +GR I V G Sbjct: 856 AEMFAGRKIAVLG 868 >gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Leptotrichia goodfellowii F0264] Length = 490 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 166/487 (34%), Positives = 268/487 (55%), Gaps = 29/487 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + +E KI + DSR I+ ++F A+ G+ DGH FI +AI GA+ I+V + + Sbjct: 15 KGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEENIEVSKYD 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRS 140 + + V++ RK L + AS YG +P++ I+ +TGT+GK++ + ++ I +++ Sbjct: 75 KY--EDISFVFVEDVRKHLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSYILENILEKT 131 Query: 141 GLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +IG T F N TTP + L K ++ +GV + +E SSH L+ Sbjct: 132 A----RIGTTGNRILDEEFETVN--TTPESLELVKLINESVKRGVEYFIMEVSSHALEIG 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R++ +K + FTNL +DH+D+H+T + YFNAK ++F +L + DD Y K ++ Sbjct: 186 RVNMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFS-MLRNSGTGTVNIDDGYGKRII 244 Query: 258 ---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 K A N + +S+ + ++ + ++ ++ I K++ L GE+ +YN Sbjct: 245 EEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYNLYN 304 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A +A+GI+ ++E L+K+ VPGRFE V N++ RI VDYAHT + L I K Sbjct: 305 VLGCAASALALGIEIEKIIEKLQKMPSVPGRFETV-KNNKNARIVVDYAHTDDGLTNIGK 363 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R IT R+I VFG GGDRD KRP M K A + +D I+T DNPR+E+P I E+ Sbjct: 364 TLRKITDNRVITVFGAGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEVEA 423 Query: 435 GI-------PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G+ + +R +AI+ A+ EM + D L++AGKGHET I+ EK+ D Sbjct: 424 GLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKGHETYQIIGK-EKRHFDDR 482 Query: 487 DIIREIL 493 +I ++ L Sbjct: 483 EIAKKYL 489 >gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia montanensis] Length = 479 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 169/486 (34%), Positives = 260/486 (53%), Gaps = 43/486 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76 +++ K+ +S +S+ ++ +F AI G DG+ FI A+++GA + IV+ Sbjct: 9 FQQHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVIDKV 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++D A + I Y K P+N++AVTGT+GKSSV S++ Q Sbjct: 69 IYVKDVQAALHEAIEIF----------------YPKKPKNLIAVTGTNGKSSVVSYIAQT 112 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 G + IG T + F DN LTT + K L+ G+ ++ EAS Sbjct: 113 HSLLGKKAASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V HN + ++VG +G + C++ Q + + ++++F P+ G F Sbjct: 232 EEIEFVKDYLHNHNIKFITVGKKGDLEITRINCSLKG-QNINFTFNNREYNFNTPIIGSF 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L+A G V++ L ++ V GR E + + I+VDYAHT ++LE Sbjct: 291 QASNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346 Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L ++ I ++ VVFGCGG+RD+ KR +MG++A AD I+TDDNPR+EDP+ I Sbjct: 347 KALTELKNIKLHDSKLSVVFGCGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLI 406 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485 RAEII GI + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464 Query: 486 CDIIRE 491 +++R+ Sbjct: 465 AEVVRK 470 >gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp. 7_2_43FAA] Length = 483 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 256/465 (55%), Gaps = 33/465 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+++N + DSR + G +FV + G + DGH + +AI GA+ ++ ++ T+ Sbjct: 20 EKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAGAKVVLCEKKIDIKSEGVTV 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 L+V+ RK L+ ++ YG HP ++ VTGT+GK++ ++ + +++G Sbjct: 80 ------LLVNEGRKALATMSANYYG-HPTKSLKLIGVTGTNGKTTTVYLLKSMLEKAGK- 131 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++G TI+++ +N+L TTP + L K + + +E SSH L R+ Sbjct: 132 --KVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVMEVSSHSLQLDRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK- 258 G + G FTNL RDH+D+H++ Y+NAK +LFE + ++I DD Y V+K Sbjct: 190 YGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFE----RSKASVINVDDDYGYRVLKD 245 Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + N + S+ F K + + + + G++F+ + LPGE+ VYNAL Sbjct: 246 VEKLENKEIKTYSINNNSDF---KASDLMLKEGDIHFKINGEEFNSV--LPGEYNVYNAL 300 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHTSNSLEMILKN 375 A G +GI + + + L + VVPGR E +G I +D+AHT + L+ IL+ Sbjct: 301 GAVGAMSILGISNESIRKGLLDV-VVPGRCERIGYKYDIPYDIIIDFAHTPDGLKNILET 359 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ T R+I V+GCGGDRD+ KR +G+I +LAD+AI+T DNPR EDP I EI+ G Sbjct: 360 LKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLAIITSDNPREEDPMAIIKEIVAG 419 Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I ++ NR+EAI+ A+ M + DV+V+AGKGHE I G Sbjct: 420 ITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKGHENYQITNEG 464 >gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 487 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 180/510 (35%), Positives = 266/510 (52%), Gaps = 52/510 (10%) Query: 10 DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + L+N L+I + E K I V DSR ++ G +FVAI G + +GH +I QA GA Sbjct: 3 NLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 AIV L + + +VV N+ L+L A+ YG E ++ VTGT+GK Sbjct: 63 TAIVCEQLPQL------LFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + Q+ +++G + G ST++ + D R TTP P+ L L + QGV Sbjct: 117 TTIATLLYQLFRKAGQKA---GLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGV 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSHG+DQHR +G+ G FTNL RDH+DYH+T AY + K R F+ LP + Sbjct: 174 KYCFMEVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPSTA 232 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ DD N + + Q K LK H + I +E + FD Sbjct: 233 FALVNIDDK----------NGAFMLQNTKAQKKTYALK----THADYKAHI-IESR-FDG 276 Query: 303 LF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L L GEF YN L G +G+D L + + V GRF++ + Sbjct: 277 LLLRINQHEVWTKLIGEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQY-AVS 335 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G VDYAHT ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+ Sbjct: 336 ATGVITIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLS 395 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEK----GNRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR+E+PE I +E+ G+ K +R +AI++ + K D++++A Sbjct: 396 DNVILTSDNPRNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIA 455 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKGHET + G + D +I+RE L L Sbjct: 456 GKGHETYQEI-KGVRHHFDDFEIVREYLEL 484 >gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp. HTCC7211] Length = 947 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 178/462 (38%), Positives = 259/462 (56%), Gaps = 28/462 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIRSNTP 91 +S D+++I+ IF AI GNK DG+ FIP AI +G++ IV S+Q+ I +N Sbjct: 22 ISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVTEKKVKSVQNGILYIHTN-- 79 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 N RK L+ A ++Y K P+N++AVTGT+GKSS+A+F QI + L++ ++ Sbjct: 80 -----NVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILK---LNNKKVASIG 131 Query: 152 TISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T+ +++ L TT PI LAK LS L S + +V +EASSHGL Q+RLDG+K +G Sbjct: 132 TLGVKSKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNSG 191 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+DYH+ + Y NAK+ LFE L+ K+ I D + + R+ Sbjct: 192 IFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLI--TDQLIPEFKKIKKITINKRL 249 Query: 268 LSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCI 323 K +L+ + Q I + + L G+ Q+ N L+A A Sbjct: 250 KLYALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNS 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSG 382 IG++ +L + KL V GRFE +G ++ +DYAHT ++L+ L N+R + Sbjct: 310 NIGLNK--ILNKIYKLKPVEGRFEKIGKIKNHSKVILDYAHTPDALKTCLLNLREQFPAK 367 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFI 440 +IIV+FGCGG+RDQ KR MGKIA +D I+T+DNPR E+P+KIR + I Sbjct: 368 KIIVLFGCGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLENPQKIRRDIKKGIKKKKII 427 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 E +R AI AI LN D+L+VAGKGHE + G KK+ Sbjct: 428 EISDRAMAITRAIHDLNSGDILLVAGKGHEKTQDI--GSKKI 467 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 45/296 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ + IF AI G K DG+ F+ Q+ + A VV+ + + S I+ V Sbjct: 516 NSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQNKLNHSRQIK-------V 568 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 NT KFL+ S+++ K + NI+A+TG+ GK+++ + + +S I P S Sbjct: 569 KNTLKFLT-NVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNK--ISKVSISPKS--- 622 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI----AGSF 209 +N+ P ++ ++ G+ V G+D+ +D + I G Sbjct: 623 ---YNNKFGVPLSLF---NINQKDEFGILEV-------GMDKKGEIDYLSKIIEPDVGVI 669 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ H + + AK + + + ++ ADD++ K A +V+S Sbjct: 670 TNINYAHAKNFKNIKQIALAKSEIIDNIRL-YGFIVLNADDSFFKLHYNIAKKKNIKVIS 728 Query: 270 VGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALVA 318 G + K I++K K ++ IS+ K FL L +FQ +YN L A Sbjct: 729 FGIKNHKADIKLINIK---PFRKKFRINISLNNKRKYFL--LSNDFQNNIYNILSA 779 >gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi 1DA3] Length = 493 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 254/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q+G FVAI+G+ DG FIP AI QGA A++ + + I + Sbjct: 25 VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEIVDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A LY +++ VTGT+GK+++ + Q G + +G Sbjct: 85 VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T Q+ TT + + + K LS L+ Q + ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y NAK+ LF E + A+I DD K+ +NA L Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258 Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +V + + V A H + +TI +GK + PL GEF N ++A + Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G +L +L V GR E + ++ VDYAHT ++LE L+ +R G Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQADDNA-KVVVDYAHTPDALEKALQALRVHCQGE 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKDMLVGLTKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E + QD++++AGKGHE I+ +G S D + +LGL Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491 >gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma centrale str. Israel] Length = 489 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 178/475 (37%), Positives = 259/475 (54%), Gaps = 30/475 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +++DSR+++ G++FV + E F+ A+ GA IV SA +L Sbjct: 26 QVSGITADSRNVKPGFVFVCL---SEVAKKFVSDAVKAGARFIVAGSAEALPRVD----- 77 Query: 89 NTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N I++ F AS Y G+ PE + AVTGT+GK+SVA F +QI +G + I Sbjct: 78 NAQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASI 137 Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T I + LTTP + L K LS L + V ++ +EASSHG+ Q RL G+K Sbjct: 138 GTLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVK 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261 + +FTNL RDH DYH + Y+ AK +LF E+L E A++ AD E+ + + Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELRRLVGSR 257 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320 N ++VG + LK HN V + + GK +D FP+ G+FQ+ N L A Sbjct: 258 NTITYGINVG-DVRLTRLKSSTLGHN---VAVEICGKVVYDGAFPVLGKFQIPNLLCALA 313 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + A G + + ++KL GR E + GGR+ VDYAHT +LE L +++ Sbjct: 314 IVTASGARCSDI--PIDKLVSPRGRMELI-----GGRVIVDYAHTPAALEHALTSLKWHG 366 Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +I++VFGCGGDRD+ KR MG +A AD+ IVTDDNPR+E+PE IR EI+ Sbjct: 367 FPQKIVLVFGCGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEILSHCERA 426 Query: 440 IEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IE NR +AI A+ + D +L++AGKGHET + GE D D++R L Sbjct: 427 IEIPNRSDAIHYAVNFAVRNDHMLLIAGKGHETTQQIA-GESIEFNDGDVVRSCL 480 >gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 497 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 258/489 (52%), Gaps = 36/489 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E I ++++S+ ++ + F AI G DGH FI +AI GA I + ++ Sbjct: 18 QETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYVESLKG- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 N +++ DN RK L+L ++R Y E ++A+TGT+GK++ ++ + Q + +G Sbjct: 77 --KNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAG-- 132 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +++G TI+ D L TTP P+ K L + +G V E SSH DQ+R+ Sbjct: 133 -YKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYRV 191 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVM 257 K G FTNL +DH+DYHQT + YF AK R+FE++ KE+ I DD Y + ++ Sbjct: 192 YSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIYSINVDDEYGRRIL 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308 N L V K I K +S+ +F + + L G Sbjct: 252 DYLKNH----LKVN-DDKIITYGKTSEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRG 306 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F +YN A I G D + E L + GRFE + +G + +DYAHT ++ Sbjct: 307 VFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI--EGQGFIVVIDYAHTPDA 364 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE ILK++ I RII VFG GG+RD+ KRP+MG+ A L+DI I+T DNPR+EDP I Sbjct: 365 LENILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSDIVILTSDNPRNEDPLSI 424 Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484 +I+ GI I +R +AI AI + ++D++++AGKGHE I+ G+K + Sbjct: 425 IEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKGHENYQII--GDKILHFD 482 Query: 485 DCDIIREIL 493 D ++++EI+ Sbjct: 483 DAEVVKEII 491 >gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea F0287] Length = 486 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 178/495 (35%), Positives = 260/495 (52%), Gaps = 55/495 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFS 83 ++ I V DSR ++ G +FVAI G + +GH +I QAI GA AIV L D S Sbjct: 19 EDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSGANAIVCEQLPQQPLPDVS 78 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141 +VV N+ L+L A+ YG E ++ VTGT+GK+++A+ + Q+ +++G Sbjct: 79 --------YIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTIATLLYQLFRKAG 130 Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G ST++ + D R TTP P+ L L + QGV + +E SSHG+DQH Sbjct: 131 QKA---GLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQH 187 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R +G++ G FTNL RDH+DYH+T AY + K R F+ LP + A++ DD Sbjct: 188 RTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATAFALVNNDDK------ 240 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLP 307 N + + Q K LK H + I +E + FD L L Sbjct: 241 ----NGAFMLQNTKAQKKTYALK----THADYKAYI-IESR-FDGLLLRINQHEVWTKLI 290 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GEF YN L +GID L + + V GRF++ ++ G VDYAHT + Sbjct: 291 GEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQY-AVSATGVITIVDYAHTPD 349 Query: 368 SLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +LE +LK I I + + V GCGG+RD+GKRPIM IA L+D I+T DNPR+E+P Sbjct: 350 ALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNEEP 409 Query: 426 EKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I +E+ G+ P K +R +AI++ + K D++++AGKGHET + G + Sbjct: 410 ETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKGHETYQEI-KGVR 468 Query: 481 KMSVDCDIIREILGL 495 D +I+RE L L Sbjct: 469 HHFDDFEIVREYLEL 483 >gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 514 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 164/416 (39%), Positives = 244/416 (58%), Gaps = 22/416 (5%) Query: 83 SATIRSNTP---ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138 SAT +NTP +L N ++ S SR Y K P+ + AVTGT+GK+SV F +QI Q Sbjct: 108 SATCMTNTPGFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 167 Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 SG ++ IG T + + N LTTP L L +S V H+ +E+SSHG+D Sbjct: 168 NSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGID 224 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R+ G+KL A +FTN +DH+DYH++ Y K RLF E+LP+ AI+ AD Sbjct: 225 QYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGA 284 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++K A +V++ G +G I L + + HN Q +T+ ++ + ++ FP+ G+FQ YN Sbjct: 285 LLKIAEKRSNKVVTYGKKGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNL 344 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ G++ + +EKL PGR E V + +VDYAHT ++L+ L + Sbjct: 345 LCAIGIS---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLS 394 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ + +II+VFGCGG+RDQ KR MGKIA AD I+TDDN R EDP KIR +I+ Sbjct: 395 LKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLH 454 Query: 436 IPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 P +E G R +AI +++ N+ +L+VAGKG+E I+ N + S D ++I+ Sbjct: 455 CPDALEIGGRRKAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 509 >gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 486 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 260/474 (54%), Gaps = 25/474 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+N + I + + +I ++ DSR + G +F AI G DG+ FIP+AI +GA A++ Sbjct: 5 KLLNHIGI-SYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKGAVAVI 63 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130 +A ++ +S + P + V + R+ +L S+ +G+ + ++ VTGT+GK++ + Sbjct: 64 SDNAEVVKLYSK--KYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKTTTS 121 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + + G + IG + + + TTPS + K L Q + V E Sbjct: 122 YIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEFVVSEV 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+ HR+ GIK FTNL +DH+D+H+ YF +K +LF L K S ++I D Sbjct: 182 SSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLF--FLTK-SISVINID 238 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPL 306 D + K + C +++ G GK K+ + NK+ ++T+ +E K + L Sbjct: 239 DPFGKVLSGLRAIFPCELITYGKNGKV----KIENVENKKFGSEITLRLENKRYVIKTNL 294 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 GE+ YN A L +++G + + + E + V PGR E V N +++DYAHT Sbjct: 295 KGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-PGRLEEVVEN-----VFIDYAHTP 348 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE +L + I G++I VFGCGGDRD+ KRP MGK+A +D I+T+DNPRSE+P Sbjct: 349 DALEKVLTVLSQIKKGKLITVFGCGGDRDREKRPFMGKVAEKFSDRVIITNDNPRSEEPS 408 Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 KI +I+ GI I NR EAI A+E D++++AGKGHE I+ N Sbjct: 409 KIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKGHENYQIIGN 462 >gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Desulfovibrio magneticus RS-1] Length = 488 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 261/476 (54%), Gaps = 26/476 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V++DSR +G +FVA+ G+++DG ++ A+ +G +V + + L T R Sbjct: 24 DVAADSRRATSGGVFVAMAGSRDDGARYVADALEKGVAFVVAAPGHDLP-AGTTAR---- 78 Query: 92 ILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VD+ + L A+ +G ++AVTGT+GK++V+ ++++ Q +G + +G Sbjct: 79 LVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGT 138 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D LTTP + + + L+ ++ G T +EASSH LDQ RL G+ A + Sbjct: 139 VAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAA 198 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GC 265 FTNL +DH+DYH+ YF AK +LF L + A+ DDA+ +++ A G Sbjct: 199 FTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGL 258 Query: 266 RVLSVGYQGKFI--HLKKVCAIHNKQ-QVTISVEGKD-FDFLFPLPGEFQVYNALVAAGL 321 V G+ G+ + H++ H ++ Q ++ G D + PLPG N L A G+ Sbjct: 259 TVPPTGF-GRLLSGHVQH----HGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGV 313 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A+G A L H PGR E + N G ++VDYAHT ++LE +L R T+ Sbjct: 314 ALALGW-PAETFAALADCHGAPGRLERI-PNPSGRAVFVDYAHTPDALENVLSAAREFTA 371 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 GR+ VVFGCGG+RD+ KRP+MG LAD+A++T DNPR EDP I ++ G+ Sbjct: 372 GRLFVVFGCGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARR 431 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I + +R AI A+ + +DVLV+AGKGHET + + + S D ++RE+ G Sbjct: 432 AILEPDRRRAIELALSEMRPEDVLVIAGKGHETYQQIGDVKYPFS-DAVVVRELTG 486 >gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii str. Madrid E] gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii] gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE (murE) [Rickettsia prowazekii] gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia prowazekii Rp22] Length = 480 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 179/504 (35%), Positives = 272/504 (53%), Gaps = 61/504 (12%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQL ++ +I +S++S+ ++ +F AI G DG+ FI A+ GA ++ Sbjct: 5 LNQL------FKNHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITE 58 Query: 75 SAYSLQDFSATIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + ++NT I + V++ K L Y K P+N+++VTGT+GKSSV S Sbjct: 59 N-----------KNNTAIDKVIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 107 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185 ++ Q + IG T + F +N LTT + K L+ + ++ Sbjct: 108 YIAQAYSLLKKKAAFIG-TIGLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYL 166 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + EASSHGL+Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI Sbjct: 167 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 226 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D + V HN + ++VG +G K C S+ G++ DF+F Sbjct: 227 LNSDIEEIEFVKDYLHNNNVKFITVGKKGDLQITKITC----------SLTGQNIDFIFN 276 Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355 + G FQ N L+AA G ++E L K+ + GR E + GTN Sbjct: 277 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALAKVKPIKGRMERIDGTN--- 333 Query: 356 GRIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 I+VDY+HT +SLE + LKNI+ + ++ V+FGCGGDRD+ KR +MG+IA LAD Sbjct: 334 --IFVDYSHTPDSLEKALIELKNIK-LHGSKLSVIFGCGGDRDKTKRALMGQIAAKLADN 390 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+TDDNPR EDP+ IRAEII GI + E +R EAI+ I L + D+L++AGKGHE Sbjct: 391 VIITDDNPRFEDPKLIRAEIIRGIGTATYTEIASRAEAIKYGINNLKQDDILLIAGKGHE 450 Query: 471 TVHIVTNGEKKMSV-DCDIIREIL 493 T I+ G+KK+ D +++R+ L Sbjct: 451 TYQII--GDKKLPFDDSEVVRKYL 472 >gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 488 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 165/477 (34%), Positives = 260/477 (54%), Gaps = 55/477 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I +V+ S++++ G+ F+ I G K DGH +I +AI +GA+ I+V Y ++ + Sbjct: 21 DEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYD----TSKL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + + NTRK LS+ ++ + +HP ++ VTGT+GK+S ++ I ++SG Sbjct: 77 KDKVLFIKTSNTRKALSVISANFF-EHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHK 135 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + I + + TTP L K + + V V +E SSH L+ HR+D Sbjct: 136 VGLIGTVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVVMEVSSHSLELHRVDCC 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL +DH+D+H T + YF AK++LFE ++ DD + +++++ + Sbjct: 196 DFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFE----MSKKRVVNVDDEWGRKIIRIYPD 251 Query: 263 AGCRVLSVGYQGKFIHLKKVCAI------------------HNKQQVTISVEGKDFDFLF 304 + ++ G K VCA+ NK+QVT+++ Sbjct: 252 S----VTYGINSK----ADVCAMSVKLYVNKNQFELRQLDNDNKEQVTLNI--------- 294 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PG F VYNAL AA A+GID + LE + +PGRFE V +N + I +DYAH Sbjct: 295 --PGIFSVYNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIVESNDKF-TIVIDYAH 351 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + L ++K + + GR +++FGCGGDRD+ KRPIMG+IA +AD IVT DNPR+ED Sbjct: 352 TPDGLLNLMKTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTED 411 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 P KI +I+ G+ ++ +R EAI+ AI+ + D +V+AGKGHET I+ + Sbjct: 412 PIKIIEDILVGLQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQILKD 468 >gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi HY01] Length = 493 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 254/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q+G FVAI+G+ DG FIP AI QGA A++ + + I + Sbjct: 25 VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A LY +++ VTGT+GK+++ + Q G + +G Sbjct: 85 VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T Q+ TT + + + K LS L+ Q + ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y NAK+ LF E + A+I DD K+ +NA L Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258 Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +V + + V A H + +TI +GK + PL GEF N ++A + Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G +L +L V GR E + ++ VDYAHT ++LE L+ +R G Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQADDNA-KVVVDYAHTPDALEKALQALRVHCHGE 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSE+P I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEEPALIMKDMLAGLTKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E + QD++++AGKGHE I+ +G S D + +LGL Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491 >gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium cellulovorans 743B] gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulovorans 743B] Length = 481 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 257/478 (53%), Gaps = 52/478 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN + DSR + + +FV I G DGH F +A+ GA I+ +D +A + Sbjct: 23 INGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSGANVIICE-----KDITA--YKD 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ V NTRK L+ S +Y +PE I+ VTGT+GK++ ++ I +++G F+ Sbjct: 76 VTIIKVKNTRKALAK-VSAVYYNNPERRLKIIGVTGTNGKTTSVFMLKAILEKAG---FK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI+++ D +L TTP + L K + ++ GV + +E SSH LD R+ GI Sbjct: 132 VGLIGTIANYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVMEVSSHSLDLDRVYGI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + +G FTNL +DH+DYH+T + YFN+K +LF +II DD Y + + Sbjct: 192 EFNSGIFTNLTQDHLDYHKTLENYFNSKAKLF----TVSKSSIINLDDDYGVALADKT-- 245 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVY 313 Q K + A + + ++ G F+ F +PG++ + Sbjct: 246 ----------QEKLTYAIDKNADLKAENINLTSRGSTFELEYNGEKEIFNINIPGKYNIQ 295 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEM 371 NAL G + G+ ++ E L+ L VPGR E V T R G I VDYAHT +SL Sbjct: 296 NALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIV-TQGRNLGFEIIVDYAHTPDSLLK 354 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 ILK R T GR+I VFGCGGDRD KR IMG I + +DIAI+T DNPRSE+P +I + Sbjct: 355 ILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIITSDNPRSEEPSEIIKQ 414 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 ++ GI ++ + +R +AI+ A++ D++VVAGKGHE ++ K ++D D Sbjct: 415 VVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKGHEDYQVL----KDKTIDFD 468 >gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio harveyi ATCC BAA-1116] gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116] Length = 493 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 252/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q+G FVAI+G+ DG FIP AI QGA A++ + + I + Sbjct: 25 VSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEIVDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A LY +++ VTGT+GK+++ + Q G + +G Sbjct: 85 VPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAVMGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T Q+ TT + + + K LS L+ Q + ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALSFAAGV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y NAK+ LF E + A+I DD K+ +NA L Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLTLFTE--HQCGHAVINVDDVVGAAWAKQLNNA----L 258 Query: 269 SVGYQGKFIHLKKVCAIH---NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +V + + V A H + +TI +GK + PL GEF N ++A + Sbjct: 259 AVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G +L +L V GR E N ++ VDYAHT ++LE L+ +R G Sbjct: 319 SLGFSKQDLLATAGQLQPVLGRMELFQANDNA-KVVVDYAHTPDALEKALQALRVHCHGE 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + + GCGGDRD GKRP+M +IA L D ++TDDNPRSEDP I ++ G+ E Sbjct: 378 LWAILGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKGMLAGLTKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E + QD++++AGKGHE I+ +G S D + +LGL Sbjct: 438 VQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTIHYS-DRESAMTLLGL 491 >gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098] Length = 491 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 169/505 (33%), Positives = 265/505 (52%), Gaps = 40/505 (7%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + ++F +L++++ R+ E+ SDSR + G IFVA+ G DG FIP A+ Sbjct: 8 VNREFEQLLDKV--------RREGGEIRSDSREVGKGDIFVAVPGVNADGARFIPPAVEA 59 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTS 124 GA IV + + + ++ D+ R+ L A + G P +L VTGT+ Sbjct: 60 GASTIVCLPGGAEAEAARAAGCT--VVHHDDPREALWRLAEARWHTGSLPLRVLGVTGTN 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQ 180 GK++ A ++ + +G ++G T+S + LTTP P+ + L+ ++ Sbjct: 118 GKTTSAYLLEHLFTATG---HKVGVLGTVSYRWPGHCEAAPLTTPDPLRVHAMLAAMAQA 174 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 GV +E SSH L+Q R+ G+ SF+NL +DH+D+HQ ++YF AK RLF EL Sbjct: 175 GVDIAVMEVSSHALEQQRVCGVPFAGASFSNLTQDHLDFHQDMESYFRAKSRLFLELPRA 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISV 295 + I DD + + +++ R LS G Q + + A + + + + Sbjct: 235 DKVMAINGDDPWGRRLLELCP----RALSFGLQKALPQQRHLWGELLSAGTDGCHLRMHL 290 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G+ ++ PL G F N L L + +G+ L HLE H V GR E V N+R Sbjct: 291 DGQQWELRSPLVGAFNASNLLSVQALALELGLMPD-DLRHLEGFHGVCGRLERV-PNARK 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++VDYAHT ++L +LK +R RI+ VFGCGG+RD+ KRPIMG+ +D+A++ Sbjct: 349 LHVFVDYAHTPDALVNVLKALRGAGFKRIVTVFGCGGNRDRTKRPIMGEAVARYSDVAVL 408 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR EDPE I ++ +PG E + +R +A A+EML D L++AGKGH Sbjct: 409 TSDNPRFEDPEAILKDV---LPGLREDREVVVEVDRRKATAKAVEMLGPDDALLIAGKGH 465 Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494 E I+ G K D +++RE+LG Sbjct: 466 EDYQII-QGTKHHYSDQEVVRELLG 489 >gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga sputigena Capno] Length = 486 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 177/510 (34%), Positives = 260/510 (50%), Gaps = 52/510 (10%) Query: 10 DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + L+ +SI + E K I V DSR ++ G +FVAI G + +GH +I QA GA Sbjct: 2 NLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126 AIV L + + ++V NT L+L A+ YG E ++ VTGT+GK Sbjct: 62 TAIVCEQLPQL------LFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + Q+ +++G + G ST++ + + R TTP P+ L L + QGV Sbjct: 116 TTIATLLYQLFRKAGQKA---GLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGV 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSHG+DQHR +G++ G FTNL RDH+DYH+T AY + K R F+ LP + Sbjct: 173 KYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATA 231 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ DD N + + Q KK A+ + FD Sbjct: 232 FALVNNDDK----------NGAFMLQNTKAQ------KKTYALKTYSDYKAYIIESRFDG 275 Query: 303 LF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 L L GEF YN L +GID L + + V GRF++ + Sbjct: 276 LLLRINQHEVWTKLIGEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQY-AVS 334 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLA 410 G VDYAHT ++LE +LK I I + + V GCGG+RD+GKRPIM IA L+ Sbjct: 335 VTGVITIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLS 394 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR+E+PE I AE+ G+ P K +R +AI++ + K D++++A Sbjct: 395 DNVILTSDNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIA 454 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKGHET + G K D + +RE L L Sbjct: 455 GKGHETYQEI-KGVKHHFDDFETVREFLEL 483 >gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bdellovibrio bacteriovorus HD100] Length = 496 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 163/464 (35%), Positives = 253/464 (54%), Gaps = 26/464 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V +D+R + G +FVAI GNK DGH FIP A+A+GA A+VV + + + Sbjct: 22 EVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKGAAALVVEDKAKIPEGYEGV-- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ V N+R+ L + ASR Y + + + VTGT+GK+SV + I + + Sbjct: 80 ---VVQVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSVTYMTEAILNHGKIPTGV 136 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + + + +TTP P++L K L S G V++E SSH LDQ R+D + Sbjct: 137 IGTVNHHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAMEVSSHALDQRRVDSVPFN 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T ++Y AK RLF +LL K +A + + +R A Sbjct: 197 TVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFAIVNTADKFGRRLRVADP 256 Query: 266 RVL-SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 VL + G + I LK A+ + + T EG + P+ G V NAL A G Sbjct: 257 AVLWTYGEKDSDIRYEILKMDFALTHFKVWTPVGEG---EVRLPMSGTHNVMNALAALGA 313 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379 ++ G+ + +E L++ VPGR + V N + ++VDYAHT ++LE +L + + Sbjct: 314 GLSAGLPLNICIEALDRFTGVPGRLQSV-PNDKNLSVFVDYAHTPDALENVLMALTKVRE 372 Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + RI +FGCGGDRD+GKRP+M ++AL +D ++T DNPR+EDP+ I +I+ G+ Sbjct: 373 NLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKYSDEVVITSDNPRTEDPQTIIQDILAGV 432 Query: 437 PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G + +R +AI ++ + DV+++AGKGHE I+ Sbjct: 433 GGANKAKATTVVDRKDAITQTLKRAQEGDVILIAGKGHEDYQII 476 >gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus Kuenenia stuttgartiensis] Length = 489 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 172/485 (35%), Positives = 261/485 (53%), Gaps = 37/485 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E+ + ++ DSR ++ G+IFVAI G K DGH FI AI +GA A+V D+ Sbjct: 18 FTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKGAIAVVAEKGV---DYVI 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 N P +VV N R+ LSL + YG +P + I+ +TGT+GK++ + F + I + SG Sbjct: 75 ----NVPQIVVPNARRALSLLSEYFYG-YPSSKMTIVGITGTNGKTTTSFFTKSIIESSG 129 Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG + S TTP + + LS + + + + +EASSH L QHRLD Sbjct: 130 NKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIEASSHALSQHRLD 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ + FTNL +H+DYH+ + Y K++L L + + A++ AD SK K Sbjct: 190 GVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGL-DENASAVLNADHTSSKYFAKST 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 V + + G +K A + + + V G F + P L G Sbjct: 249 ------VAQIVWYG----IKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHLKLTGNHN 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYNAL AA +G D ++ + LE L+ VPGR E + + + +DYAHT ++L++ Sbjct: 299 VYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDY-GQDFHVLIDYAHTHDALQV 357 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R I + RII+VFGCGGDRD+GKR MG IA +D+ +T+DNPRSEDP I E Sbjct: 358 VLETLRGIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWITNDNPRSEDPLNIIRE 417 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I GI + + +R AI A+ K DV+V+AGKGHE I+ + DC++ Sbjct: 418 IQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKGHERCQILKDKSIPFD-DCEV 476 Query: 489 IREIL 493 ++++L Sbjct: 477 VKQVL 481 >gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium mortiferum ATCC 9817] Length = 481 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 167/466 (35%), Positives = 252/466 (54%), Gaps = 44/466 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--L 93 DSR I+ G IFVA+ G+ DGH +I QAI GA+ ++VS + P+ + Sbjct: 28 DSRKIKDGDIFVALEGSISDGHKYIKQAIENGAKGVLVSKK---------VEPEFPVEYI 78 Query: 94 VVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145 +V + RK L AS YG +P+ I+ +TGT+GK++ ++ I R G + Sbjct: 79 LVKDLRKNLGKIASNFYG-YPQKKLKIIGITGTNGKTTSTYLLESILGKEKVARIGTVEY 137 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG + TTP + + K +G+ ++ +E SSH L R+D ++ Sbjct: 138 KIGDEVIEAPN------TTPESLDIVKMCKKAVEKGLEYLVMEVSSHALSLGRVDMLEFD 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 SFTNL DH+DYH+ YF AK +LF +L + I DD Y + K Sbjct: 192 VASFTNLTLDHLDYHENMDNYFQAKRKLFT-MLKDSKKSSINIDDIYGDRLYKEFGGYSY 250 Query: 266 RVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + S G+ + + Q V +++ G+ F+ + G + +YN L G+ + Sbjct: 251 SLTKSADLTGEIVEFHS-----DGQFVRLNLMGEMFEEKLAILGRYNLYNVLGVIGIALQ 305 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITS 381 +GI ++LE L+ + PGRFE V G+ Y VDYAHT ++LE ILK+I + Sbjct: 306 LGIGKNIILEKLKDIKGAPGRFELVNC----GQDYIVVVDYAHTGDALENILKSINELKK 361 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439 GR+I VFGCGGDRD KRPIMG+IA L+DIAI+T DNPR+E+P I ++ G+ G + Sbjct: 362 GRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTENPHLIIEDVKKGMNGDHY 421 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI AIE+ K D++++AGKGHET I+ G KK+ D Sbjct: 422 LVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQIL--GRKKIHFD 465 >gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Myxococcus xanthus DK 1622] Length = 507 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/479 (33%), Positives = 245/479 (51%), Gaps = 33/479 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G +FVAI G KEDG FI +A+++GA A+V S Sbjct: 24 VTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSRGAVAVVSEKPVP--------SSQ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P V + RK L+L A+ YG+ + +L +TGT+GK++ + ++ + + S+ I Sbjct: 76 VPFFKVSSARKALALIAANFYGRPADQLTLLGITGTNGKTTTSYLLEAMSTAAYASTGVI 135 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + TTP P+ L + L + GV V +E SSH L Q R+ G+ A Sbjct: 136 GTLGYKFAGRTVECANTTPDPLELHRILREMVEAGVETVIMEVSSHALAQERVHGLTFKA 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 F+NL RDH+DYH+ + YF +K +LF E L A++ DD Y+ + Sbjct: 196 AGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVNGDDTYASRIYNEQRGQKRM 255 Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 QG I V + + D L G + N L+A G+ + Sbjct: 256 AWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKLLGPHNLENILLAVGIGLGA 315 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGR 383 G V E +E++ V GR E V G + VDYAHT ++L+ ++ R++ GR Sbjct: 316 GFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVDYAHTDDALKRSIEAARSLAKGR 375 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +I VFGCGGDRD+GKRP+MG +A + AD+A+VT DNPR+EDPE+I +++ GI Sbjct: 376 VIAVFGCGGDRDKGKRPLMGAVAGEGADLAVVTSDNPRTEDPEEIISQVTAGIEKSGLRR 435 Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G++ +R AI AI + + DV+++AGKGHET V GE+K+ D Sbjct: 436 ISAGKAKSGEKGYLVDADRRAAIEQAISLASADDVVLIAGKGHETYQQV--GEEKLVFD 492 >gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera micronuciformis F0359] Length = 498 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 175/515 (33%), Positives = 270/515 (52%), Gaps = 52/515 (10%) Query: 9 KDFPELINQLS-IFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 K EL ++ I+ + R+ +I +S+DSR I+ G++FV I G DG F QA+ + Sbjct: 2 KTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61 Query: 67 GAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A++ + L + + + + D F ++ ++ VTGT+G Sbjct: 62 GAVAVLTNKHLDLPLEITQITVPDIHAALEDIVPYFYDYPGKKM------RMIGVTGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K++ + + I + +G + +G TI + D L TTP + L L+ + ++G Sbjct: 116 KTTTSHIIAHILREAG---YHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEG 172 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---- 237 + +V +E SSH L +R+ GI+ FTNL +DH+D+H++ + Y AK +LF L Sbjct: 173 MDYVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEP 232 Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + K A+I DD ++ E++K C+VL+ G + K LK + + ++ Sbjct: 233 PVKKNKTAVINIDDPHADEILKAT---SCKVLTYGVE-KDADLKG-------SNLQVGLK 281 Query: 297 GKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 FD + P + G F VYN L A G A G+D+ ++ + ++ + VPGRFE Sbjct: 282 SSSFDVVGPFVSVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFE 341 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + I VDY+HT +SLE L R + RII VFGCGGDRD+ KRPIMG IA Sbjct: 342 LV-EAGQDFAIVVDYSHTPDSLEKALTTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAA 400 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQD 460 ADI IVT DNPRSEDPE I +E+ G+ +++G R E AI AIE+ D Sbjct: 401 QYADIPIVTSDNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGD 460 Query: 461 VLVVAGKGHETVHIVTNGE---KKMSVDCDIIREI 492 ++++AGKGHET I+ +G V D +RE+ Sbjct: 461 IVLIAGKGHETYQILKDGTIHFDDREVARDAVREL 495 >gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 463 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 245/458 (53%), Gaps = 40/458 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G +F+ I G DGH + A+ GA A++ SL N P+ Sbjct: 3 LENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSL---------NVPV 53 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V +T + +++ A YG+ + +++ +TGT+GK++ + +++I +G S+ IG Sbjct: 54 IIVKDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTM 113 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++ + + TTP + L K + + + V +E SSH LD+ R+ G F Sbjct: 114 YTKVAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGRVHGCDFNVAVF 173 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAIIYADDAYSKEVMKRAHNAG 264 TNL +DH+DYH+T Y AK LF +L K A++ ADD S E K + Sbjct: 174 TNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRK---STA 230 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315 ++L+ + + A+H + + G FD + P L G+F VYN Sbjct: 231 AQILTYAIDNE----ADLRAVH----IQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNV 282 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G +A G++ +LE + + VPGRFE V + + VDYAHT +SLE L+ Sbjct: 283 LAAIGAALASGLELEAILESISTVKGVPGRFETVDAG-QDFSVIVDYAHTPDSLENALET 341 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ GRI VV GCGGDRD+ KRP+M KIA LA A+ T DNPRSEDPE+I ++ G Sbjct: 342 VKEFAEGRIFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAG 401 Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +P + +R EAI ++ K DV+++AGKGHET Sbjct: 402 VPEGNYTMIADRKEAIAYSVGAAGKGDVILIAGKGHET 439 >gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum DSM 15641] Length = 494 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 250/461 (54%), Gaps = 19/461 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++ ++ S + AG F IVG DGH F AI GA IV L D + + Sbjct: 21 DEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHGARVIVAQRKVYLADATDVV 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V +TR+ ++ A+ YG HP +++ +TGT+GK++ V+ I + +G + Sbjct: 81 E-----IIVSDTRRAMAAAAANFYG-HPSTDFHLVGITGTNGKTTTTYLVEHIAEVAGRT 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG I+ + TTP + L + + G V++E SSH LD R G Sbjct: 135 TGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAMEVSSHALDLERTWGT 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +F+NL +DH+DYH+T +AYF AK LF P +I DD + +E+++R Sbjct: 195 HFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARR--VICIDDKWGQELLRRCAA 252 Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 AG R+LSVG+ IH V V + V G+++ +PL G F V N ++A G+ Sbjct: 253 AGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLVGRFNVSNVMLALGI 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380 + +GI +VL L + VPGR + + GG ++VDYAHT ++L + + +T Sbjct: 313 GLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTPDALRKAISAVANLT 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR+IVVFGCGGDRD KRP+MG+ AL D A+VT DNPRSEDP+ I ++I+ G+ Sbjct: 373 DGRVIVVFGCGGDRDATKRPLMGQAALS-GDFAVVTSDNPRSEDPDAIISDILEGMESAS 431 Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E+ +R EAI AI + N D ++VAGKGHE I+ Sbjct: 432 ERFEVHPDRREAIARAIALANTGDAILVAGKGHEDYQILAT 472 >gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosediminibacter oceani DSM 16646] Length = 485 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 185/496 (37%), Positives = 268/496 (54%), Gaps = 67/496 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I+ ++ DSR ++ G +FVAI G K DGH FI QAI GA ++ +L + I Sbjct: 21 EVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINNGAVVVIGEKEINLPEDVLYI 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V N+RK LS +S +GK E N++ VTGT+GK++ ++ I +G S+ Sbjct: 81 K-------VKNSRKALSEASSLFFGKPAERLNVIGVTGTNGKTTTTYLIKAILDEAGYST 133 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G TI ++ L TTP + L + S + +GV +V++E SSH L HR+D Sbjct: 134 ---GVVGTIGIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVTMEVSSHSLKLHRVD 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--------------ELLPKES--PA 244 +K G FTNL +DH+D+H + + Y+ +K +LF+ E L E P Sbjct: 191 HVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFDLSRKAVINVDDESGERLCSELNIPV 250 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I YA K RA N V Y+ VCA ++++T + Sbjct: 251 ITYA---IEKNADVRAENVVIGSDGVSYE--------VCAGGERRKIT-----------Y 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +PG F VYN+L A C+++GID + + LEK+ VPGRFE V + + VDYAH Sbjct: 289 KVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGRFEPV-DEGQDFTVIVDYAH 347 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + LE +L ++T GRII VFG GGDRD+GKRP+MGK+ + +D I+T DNPR+ED Sbjct: 348 TPDGLENVLNTVKTFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIITSDNPRTED 407 Query: 425 PEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P+ I +I G+ E+ N R EAIR AIEM DV+++AGKGHE I+ G Sbjct: 408 PQAIIDDIEKGVT---ERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKGHEDYQII--G 462 Query: 479 EKKMSV-DCDIIREIL 493 +K + D ++ RE L Sbjct: 463 DKVLHFDDREVAREFL 478 >gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 484 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 24/475 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 EV +DSR + G IFVA+ G +EDG FIP A GA ++V A S + +A Sbjct: 18 EVRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGA-GVIVCRADSEEAAAAATAGCRV 76 Query: 92 ILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + D L +R + P I+ VTGT+GK++ ++++ ++G ++G Sbjct: 77 VHHADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAG---HKLGVM 133 Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+S + LTTP + + L+ ++ GV +E SSH +DQ R+ G+ Sbjct: 134 GTVSYRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCGVPFSG 193 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL +DH+DYH+ ++YF AK RLF EL + + ADDA+ + +++ A Sbjct: 194 AAFTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTA--- 250 Query: 267 VLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 LS G Q + + + + + + +S+E ++ PL G F N L + Sbjct: 251 -LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAV 309 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + +GID + LE V GR E V N +G ++VDYAHT ++LE +LK +R Sbjct: 310 ALEMGIDPE-AFKALESFTGVSGRLERV-ENPQGLNVFVDYAHTPDALENVLKALRDAGF 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 R+I VFGCGG+RD+ KRPIMG+ +D+A++T DNPR EDPE I +++ G+ E Sbjct: 368 ERVITVFGCGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLADAKE 427 Query: 442 ---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EA A+ ML K+D L++AGKGHE I+ G K D +++REIL Sbjct: 428 VVVEVDRREATTRALGMLGKKDALLIAGKGHEDYQII-QGVKHHYSDQEVVREIL 481 >gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 510 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 168/492 (34%), Positives = 267/492 (54%), Gaps = 44/492 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL++ S F + + +++ VS DSR I+ + F ++ G+ DG +I +AIA GA I+ Sbjct: 5 ELLSDESAFVIGDEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANGASVII 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV 129 S Y D + +V+ + +F+SLF ++ Y +P+ NI+ +TGT+GK++V Sbjct: 65 TDSKYDTNDVAQ--------VVIKDIFRFMSLFGAKFYN-YPDRELNIMGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ I SG+ IG + + TTP + + + + +S+ G+ ++ +E Sbjct: 116 TYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDISNNGIKYLVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPA 244 SSH L R+ GI+ FTNL R+H+D+H+ YF AK LF+EL + A Sbjct: 176 VSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCA 235 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 II DD Y ++++K +A ++ S ++K A + ++ +G F+ +F Sbjct: 236 IINVDDEYGRKLLKVGISAEIKLYSA--------IEKNAADFKASNIKVTNKGAVFNLVF 287 Query: 305 PLP---------GEFQVYNALVAAG--LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G VYNAL A +C I ++A+ E L VPGR E V T Sbjct: 288 CNKRARIRIKHIGVHNVYNALAALAAAVCSEISFENAV--EGLNNSSRVPGRLEKVNTIG 345 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G I VDYAHT ++LE +L+ ++ + RII+VFGCGGDRD+ KRP+MGKIA++++D Sbjct: 346 LGFEIVVDYAHTDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDFV 405 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEM-LNKQDVLVVAGK 467 VT DNPR+EDP +I +I GI +K +R AI+ I M +K D++++AGK Sbjct: 406 FVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAGK 465 Query: 468 GHETVHIVTNGE 479 GHET I + G+ Sbjct: 466 GHETYQITSGGK 477 >gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium johnsoniae UW101] gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium johnsoniae UW101] Length = 487 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 168/504 (33%), Positives = 268/504 (53%), Gaps = 38/504 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + + +Q ++ DSR +++ +FVAI G+ DGH +I + Sbjct: 4 LKDILYKVTIESVTGSTDIDIQ-------KIEFDSRKVESNDVFVAIRGSLSDGHDYIEK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI GA+AI+ I+ + + V +T L+ A+ +G + + V Sbjct: 57 AIQLGAKAIICDK------LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 TGT+GK+++AS + Q+ +++G F++G ST+ TTP + + L+ Sbjct: 111 TGTNGKTTIASLLFQLFEKAG---FKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ GVTH +E SSHG+ Q R + + + G FTNL DH+DYH T Y + K F+ Sbjct: 168 MAEAGVTHCFMEVSSHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDS 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L PK + + DD +++ N + L+ + + I Q + ++ Sbjct: 228 L-PKTAFVLSNIDDKNGSVMLQ---NTAAKKLTYALKS---YADYRAQILESQLSGLLLK 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G F YN L G + +GIDS L L L V GRF+++ +++ G Sbjct: 281 VNDNEVWVKLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQYIVSDN-GI 339 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++LE +LK I I + ++I V GCGG+RD+ KRPIM KIA DL+D AI Sbjct: 340 TAVVDYAHTPDALENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAI 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR+EDPE I E+ G+ G K +R +AI+TA ++ +D++++AGKGH Sbjct: 400 LTSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET + NG + D + ++EIL Sbjct: 460 ETYQEI-NGVRHHFDDMETVKEIL 482 >gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Rickettsia rickettsii] gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia rickettsii str. Iowa] Length = 479 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 169/488 (34%), Positives = 259/488 (53%), Gaps = 43/488 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA + IV+ Sbjct: 9 FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++D A + I Y K P++++AVTGT+GKSSV S++ Q Sbjct: 69 IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 G + IG T + F N LTT + K L+ G+ ++ EAS Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V HN + ++VG +G + C++ Q + + ++++F P+ G F Sbjct: 232 EEIEFVKDYLHNHNVKFITVGTKGDLEITRLNCSLKG-QNINFTFNNREYNFNTPIIGSF 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L+A IG V++ L ++ V GR E + + I+VDYAHT ++LE Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346 Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ I Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485 RAEII GI + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464 Query: 486 CDIIREIL 493 +++R+ + Sbjct: 465 AEVVRKCI 472 >gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurihydrogenibium yellowstonense SS-5] Length = 497 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 163/489 (33%), Positives = 257/489 (52%), Gaps = 36/489 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E + ++++S+ ++ + F AI G DGH FI +AI GA I + ++ Sbjct: 18 QETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKNGASVIFIEDEKYIESLKG- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 N +++ DN RK L+L ++R Y E ++A+TGT+GK++ ++ + Q + +G Sbjct: 77 --KNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKTTTSNLLAQYYEMAG-- 132 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +++G TI+ D L TTP P+ K L + +G V E SSH DQ+R+ Sbjct: 133 -YKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVVAEVSSHAADQYRV 191 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVM 257 K G FTNL +DH+DYHQT + YF AK R+FE++ KE+ I DD + + ++ Sbjct: 192 YSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIYSINVDDEHGRRIL 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308 N L V K I K +S+ +F + + L G Sbjct: 252 DYLKNH----LKVN-DDKIITYGKTSEDFKILDYRLSLFETEFSYKYKDTLSKIKTKLRG 306 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F +YN I G D + E L + GRFE + +G + +DYAHT ++ Sbjct: 307 VFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEVI--EGQGFIVVIDYAHTPDA 364 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE ILK++ I RII VFG GG+RD+ KRP+MG+ A L+D+ I+T DNPR+EDP I Sbjct: 365 LENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSDVVILTSDNPRNEDPLSI 424 Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484 +I+ GI I +R +AI AI + ++D++++AGKGHE I+ G+K + Sbjct: 425 IEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKGHENYQII--GDKILHFD 482 Query: 485 DCDIIREIL 493 D ++++EI+ Sbjct: 483 DAEVVKEII 491 >gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase [Rickettsia sibirica 246] Length = 479 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 259/478 (54%), Gaps = 27/478 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA ++ + S+ Sbjct: 9 FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSI----- 63 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ V + + L Y K P++++AVTGT+GKSSV S++ Q G + Sbjct: 64 ---VIDKVIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120 Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T + F N LTT + K L+ G+ ++ EASSHGLDQ R Sbjct: 121 ASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQAR 179 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D V Sbjct: 180 LREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKD 239 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 HN + ++VG +G + + ++ Q + + ++++F P+ G FQ N L+A Sbjct: 240 YLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 IG V++ L ++ V GR E + + I+VDYAHT ++LE +L ++ Sbjct: 299 VLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALEKVLTELKN 354 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IRAEII GI Sbjct: 355 IKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGI 414 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491 + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D +++R+ Sbjct: 415 EKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDDAEVVRK 470 >gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis C-1013-b] Length = 505 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 163/493 (33%), Positives = 265/493 (53%), Gaps = 39/493 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR I+ ++FVA+ G+ DGH FI A+ GA+ I+ ++ ++ T + Sbjct: 20 EIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQYTNT--T 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++V++ RK L + AS Y +P+N I+ +TGT+GK++ + ++ I +++ Sbjct: 78 EITFVLVEDIRKKLGIIASNYYD-YPQNKIKIVGITGTNGKTTSSFILENILEKTA---- 132 Query: 146 QIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +IG T F N TTP + L K + +G + +E SSH L+ R+D + Sbjct: 133 RIGTTGNRILDEEFQTVN--TTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVDML 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI--IYADDAYSKEVMKRA 260 + + FTNL +DH+D+H+T + YFNAK ++F L S + I DD Y ++ Sbjct: 191 QFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYSEK 250 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------DFDFLFPLP 307 + +SV + I + +N ++ I++E ++ F L Sbjct: 251 KDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSDGEYKFEINLI 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE+ +YN L +++GI+ ++++E L+++ VVPGRFE + N RI VD+AHT + Sbjct: 311 GEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETI-KNELEARIVVDFAHTDD 369 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L I K ++ IT R+I +FG GGDRD KRP M K A +D I+T DNPR+E+P Sbjct: 370 GLLNIGKTLKQITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENPVN 429 Query: 428 IRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I A+I G+ ++ +R AI+ I+ML K D L++AGKGHET I+ EK Sbjct: 430 ILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGKGHETYQIIGT-EK 488 Query: 481 KMSVDCDIIREIL 493 D +I+R+IL Sbjct: 489 THFDDREIVRKIL 501 >gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio alginolyticus 40B] Length = 493 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 254/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA++G DG FI AI QGA A + + + I + Sbjct: 25 VSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D + LS A ++Y +++ VTGT+GK+++ + Q + + +G Sbjct: 85 VPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAVMGT 144 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + Q TT + + + K LS L++Q T+ ++E SSHGL Q R+ + AG Sbjct: 145 TGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALSFAAGV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y NAK+ LF + + AII DD + + NA + Sbjct: 205 FTNLSRDHLDYHGTMEEYANAKLGLFTQ--HQCERAIINVDDEVGHQWASQLSNA----I 258 Query: 269 SVGYQGKFIHLKKVCAI---HNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +V + + A + + +TI +GK PL GEF N ++A + Sbjct: 259 AVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G + +LE +L V GR E T R ++ VDYAHT ++LE L+ +R G+ Sbjct: 319 SLGKEKQALLETAGQLQPVLGRMELFQTEDRA-KVVVDYAHTPDALEKALQALRVHCEGQ 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP +I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDMLAGLSKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ AIE + D++++AGKGHE I NGE D + ++LGL Sbjct: 438 VQHDRFKALSYAIENASPNDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491 >gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2] gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2] Length = 514 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 175/507 (34%), Positives = 267/507 (52%), Gaps = 46/507 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L+ + P L + +I + +DSR ++ G +F+A+ G K DGH ++ Sbjct: 1 MKLSYLLKECTPLWRRSLDPASDPGSDPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYV 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A+ +GA A+VV + ++ V +TRK ++ A+R Y E+ ++ Sbjct: 61 EDALERGAAAVVVQQ---------RVPGKQRMVEVADTRKAMASIAARFYDNPSESMCLV 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ + ++ I ++G IG + +N +TTP I L + L+ + Sbjct: 112 GITGTNGKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQM 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V+HV +E SSH +D HR+ + AG FTNL +DH+DYH+T YF K R F + Sbjct: 172 KAAQVSHVVMEVSSHSIDLHRVRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRI 231 Query: 238 LPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LP + A+I DD + + A +V++ G + VCA+ + +T Sbjct: 232 LPSGPKALTAMAVINLDDEKGQALRD---AAATKVVTTGRDSR----ADVCALDLAETIT 284 Query: 293 -----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + ++G + F L G F V N L AAG AIGID +++ +E VPGR E Sbjct: 285 GTTGILKIDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLE 344 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V ++ G ++VDYAHT ++L IL+ ++ RII V GCGGDRD+ KRPIMG+IA Sbjct: 345 RVEPDN-GRHVFVDYAHTPDALMSILETLKAQAPKRIITVVGCGGDRDRSKRPIMGQIAA 403 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP----------------GFIEKGNRIEAIRT 451 L+D+AI+T DNPRSEDP I EI+ GI GF + +R +A+ Sbjct: 404 TLSDVAIITSDNPRSEDPHGIIQEILKGIDTALCPELKPDQLKTGNGFFVEPDRRKALEL 463 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNG 478 A+ D+LV AGKGHET I+ G Sbjct: 464 AVAASTPGDILVAAGKGHETYQILKGG 490 >gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_33] Length = 485 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 251/475 (52%), Gaps = 42/475 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KYNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G +++G F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +D I FTNL +DH+DYH T + YF AK +LF +L K + ++I DD Y K + Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDDYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++S G G + + + I K+QV F L G+F +YN Sbjct: 243 EFIIDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIV 353 Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413 Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ G KK D Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM 2912] Length = 500 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 265/504 (52%), Gaps = 41/504 (8%) Query: 1 MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+LQDL+ ++ ++S ++ +V++DSR G +F+A+ G+ DGH F Sbjct: 1 MRLQDLVSALLHVRVVGEISAV-------EVTDVTADSRTAGPGSLFIALRGHTVDGHAF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + +A GA A VV + + P +VV +TR+ ++ A+ + +HP Sbjct: 54 VDEARRSGAVAAVVEDC---------LDTPLPQIVVPDTRRAAAVLAAVFF-RHPSRAMR 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175 ++ VTGT+GK++V + + + G + IG T I + TTP + L + + Sbjct: 104 VIGVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFA 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + GV+H +E SSH L+ R+ G + FTNL +DH+D+H + +AY AK +LF Sbjct: 164 QMRDAGVSHAVMEVSSHALELDRVAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFA 223 Query: 236 EL-------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 L ++ A++ DD K M R A V + ++V Sbjct: 224 RLGNEYGDTRADQAFAVVNLDDPVGK-WMARQTTAQTVTYGVDRPAD-LRAREVEVDTRG 281 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +EG+ PLPG F VYN L A G G+D + + L ++ VPGR E Sbjct: 282 VRFVAEIEGRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMER 341 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V G + VDYAHT +SL+ +L+ +R + SGR+IVVFGCGGDRD+ KRP+MG+IA Sbjct: 342 VDAGQPFG-VVVDYAHTPDSLDNVLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYT 400 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461 AD AI+T DNPR+EDPE+I +I G+ + +R EAIR AI + ++DV Sbjct: 401 RADYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDV 460 Query: 462 LVVAGKGHETVHIVTNGEKKMSVD 485 +++AGKGHET I+ G +K D Sbjct: 461 VLIAGKGHETYQII--GRRKFPFD 482 >gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. MED222] Length = 494 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 240/456 (52%), Gaps = 14/456 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A+V ++ + Sbjct: 27 VEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWLNA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V LS A R+Y ++ VTGT+GK+++ + Q G S +G Sbjct: 87 VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F + + TT S I + + LS L+ + + ++E SSHGL Q R+ + Sbjct: 147 TG--NGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265 G FTNL RDH+DYH T + Y AK RLF + K A+I DD K M NA Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKRLFTQ--HKCKHAVINVDDEVGKAWMADLSNAIAV 262 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +L + + + V +++ D PL G+F N LVA +++ Sbjct: 263 SLLPLSDYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFATLLSL 322 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GID +++ +L V GR E S+ ++ VDYAHT ++LE L +R SG++ Sbjct: 323 GIDKQTLVDTASQLQPVIGRMELFQVPSKA-KVVVDYAHTPDALEKALAALRVHCSGKLW 381 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIE 441 +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ F+E Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A++ A+E D++++AGKGHE ++ + Sbjct: 442 H-DRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKD 476 >gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia akari str. Hartford] Length = 480 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 168/471 (35%), Positives = 260/471 (55%), Gaps = 26/471 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ K+ +S +S+ ++ +F + G D + FI A+ Q A A+V++ SA Sbjct: 9 FKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQ-AVALVITDNKK----SA 63 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 TI I+ V++ + L Y K P+N++AVTGT+GKSSV S++ Q G + Sbjct: 64 TI---DKIIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 120 Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T + F DN LTT + K L+ + +++ EASSHGL+Q R Sbjct: 121 ASIG-TIGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 179 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L IK+ FT+ +DH+DYH T++ Y AK++LF E L + AI+ +D + + Sbjct: 180 LGEIKVNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKD 239 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 N + ++VG +G + + K+ Q ++ + ++ F + G FQ N L+A Sbjct: 240 YLLNHNIKFITVGKKGD-VQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A IG D ++E L ++ V GR E + + I+VDY+HT ++LE L ++ Sbjct: 299 ALSIHYIGCDFNKIVEILTQVKPVKGRMERIDNTN----IFVDYSHTPDALEKALTELKN 354 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I ++IVVFGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEII I Sbjct: 355 IKLRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEIISCI 414 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++E NR EAI+ I L + D+L++AGKGHE I+ G+KK+ D Sbjct: 415 EKADYMEIANREEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFD 463 >gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophus aciditrophicus SB] Length = 509 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 169/499 (33%), Positives = 249/499 (49%), Gaps = 39/499 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 IN L I E ++ V +SR +FVAI G K DGH +I A+ GA+ IV Sbjct: 10 INILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVRCGAKVIVCE 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT--GTSGKSSVASF 132 ++ +R V+N R+ L L A Y ++AV GT+GK++V Sbjct: 70 KEVTMPPEITVVR-------VENGRRTLGLLARNFYADPSRCLVAVAVMGTNGKTTVTYI 122 Query: 133 VQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 ++ I Q +G S +G + + TTP + L + + + GVTH+ E SS Sbjct: 123 LESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLVAEVSS 182 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-----KESPAII 246 H +D R+D G FTNL +DH+DYH+T + YF AK R F E+LP + Sbjct: 183 HAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHRYAMAV 242 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ADD + K +++ R L+ G + K I + + I V FD Sbjct: 243 NADDPWGKRLIRETGEIS-RPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMSFDVDTA 301 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G+F +YN L A +A+ + + + ++ VPGR E V + S ++VDYAHT Sbjct: 302 LIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKV-SGSTQPDVFVDYAHT 360 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L+++ GRII VFGCGGDRD+GKRP+MGK+A + +D+ I+T DNPRSEDP Sbjct: 361 DDALRRVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDLTILTSDNPRSEDP 420 Query: 426 EKIRAEIIHGIP-------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I +I GI G++ +R EAI AI D++++AG Sbjct: 421 LSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAIRSARPSDIVLIAG 480 Query: 467 KGHETVHIVTNGEKKMSVD 485 KGHE I+ GEK++ D Sbjct: 481 KGHEDYQII--GEKRLFFD 497 >gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microscilla marina ATCC 23134] Length = 502 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/456 (34%), Positives = 245/456 (53%), Gaps = 31/456 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR +QA +FVA+ G + DGH +I QA+A GA+ +V + F + + Sbjct: 24 IENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVALGAKVVVCET------FPKNLSDS 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V N+ K L AS Y HP ++ +TGT+GK++ + + Q+ ++ G ++ Sbjct: 78 ATYIQVANSAKALGWLASNYY-DHPSKKLKLVGITGTNGKTTTVTLLHQLFRKFG---YR 133 Query: 147 IGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G STI ++ D RLTTP P+ L + ++ + G TH +E SSH + Q R+ G+ Sbjct: 134 VGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCFMEVSSHAVVQERIAGL 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +FTN+ DH+D+H+T Y NAK + F++ LP + A+I ADD K M N Sbjct: 194 HFTGAAFTNISHDHLDFHETFANYINAKKQFFDQ-LPPTAFALINADD---KRGMVMLQN 249 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + +F K + Q + + ++ D + F + G F YN L + Sbjct: 250 TVAKTQRTFALKQFADFKARVVESSLQGLFMEID--DVEVWFQMIGYFNAYNLLGIYAIA 307 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380 + +G D+ L L L VPGRFE + S G VDY+HT ++LE +L+ I + + Sbjct: 308 VLLGEDTTETLTLLSGLQSVPGRFEKIIGES-GATGVVDYSHTPDALENVLQTIFELRQS 366 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436 +II V GCGG+RD KRPIM +IA +D+ I T DNPR+E P +I ++ G+ Sbjct: 367 GQKIITVVGCGGNRDASKRPIMAQIACQYSDVVIFTSDNPRNEPPMQILEDMQEGVSIDD 426 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +R +AIR A E+ KQD+++VAGKGHET Sbjct: 427 EPKTSLIASRKDAIRKACELAQKQDIILVAGKGHET 462 >gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga ochracea DSM 7271] gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea DSM 7271] Length = 486 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 51/493 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR + G +FVAI G + +GH +I QAI GA AIV + Sbjct: 19 EDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSGATAIVC------EQLPQQ 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLS 143 +VV N+ L+L A+ YG E ++ VTGT+GK+++A+ + Q+ +++G Sbjct: 73 PLPGVSYIVVPNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTIATLLYQLFRKAGQK 132 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + G ST++ + D TTP P+ L L + QGV + +E SSHG+DQHR Sbjct: 133 A---GLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFMEVSSHGIDQHRT 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +G++ G FTNL RDH+DYH+T AY + K R F+ LP + A++ DD Sbjct: 190 EGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPATAFALVNNDDK-------- 240 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGE 309 N + + Q K LK H + I +E + FD L L GE Sbjct: 241 --NGAFMLQNTKAQKKTYALK----THADYKAYI-IESR-FDGLLLRINQHEVWTKLIGE 292 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F YN L + ID L + + V GRF++ ++ G VDYAHT ++L Sbjct: 293 FNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQY-AVSATGVITIVDYAHTPDAL 351 Query: 370 EMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 E +LK I I + + V GCGG+RD+GKRPIM IA L+D I+T DNPR+E+PE Sbjct: 352 ENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNEEPET 411 Query: 428 IRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +E+ G+ P + K +R +AI++ + K D++++AGKGHET + G + Sbjct: 412 ILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHETYQEI-KGVRHH 470 Query: 483 SVDCDIIREILGL 495 D +I+RE L L Sbjct: 471 FDDFEIVREYLEL 483 >gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia conorii str. Malish 7] Length = 479 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 258/486 (53%), Gaps = 43/486 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA + IV+ Sbjct: 9 FQQHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++D A + I Y K P++++AVTGT+GKSSV S++ Q Sbjct: 69 IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 G + IG T + F N LTT + K L+ G+ ++ EAS Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V HN + ++VG +G + + ++ Q + + ++++F P+ G F Sbjct: 232 EEIEFVKDYLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSF 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L+A IG V++ L ++ V GR E + + I+VDYAHT ++LE Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346 Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ I Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485 RAEII GI + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D Sbjct: 407 RAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464 Query: 486 CDIIRE 491 +++R+ Sbjct: 465 AEVVRK 470 >gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1] Length = 491 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 172/493 (34%), Positives = 256/493 (51%), Gaps = 49/493 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ ++++S+ ++ G +F AI G K DGH FI AI GA A+V+S + +S Sbjct: 19 KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKY-P 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ DN RK + ++R Y HP ++ VTGT+GK++V + + Q + +G ++ Sbjct: 78 DVTFVISDNIRKTQAEVSNRFY-DHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTG 136 Query: 146 QIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG FA TTP I LS + +G +V E SSH +DQ+R+ G Sbjct: 137 IIGTIHYKYREKIFASGR--TTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGT 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSKEVMK-- 258 G FTNL +DH+DYH+ + YF K F+ + +I DD Y + + + Sbjct: 195 VFHGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDF 254 Query: 259 ----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 R NA RV + +K V + + V+ L G Sbjct: 255 KSCMNTISYGRDKNAQFRVSDF-----VVDMKGVSFCYEYNGIKRRVKS-------DLKG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 EF +YN A + G D + EKL + GRFE V + + DYAHT ++ Sbjct: 303 EFNIYNIAAAFSYLLRSGFDIDFLHHATEKLKPIRGRFETV---EKDFLVVNDYAHTPDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +E IL ++ I RII+VFG GGDRD+GKRP+MGKIA +LADI I+T DNPRSEDP +I Sbjct: 360 IEKILMSLNQIKKNRIIIVFGAGGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRI 419 Query: 429 RAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I G+ +EK +R EAI+ AIE+ K D++++AGKGHET I+ G+K Sbjct: 420 IEDIKSGMK--MEKEIYEIIDREEAIKKAIEIARKDDIVLIAGKGHETYQII--GDKTYY 475 Query: 484 V-DCDIIREILGL 495 D D+ ++ LG Sbjct: 476 FDDLDVAKKYLGF 488 >gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium thermocellum ATCC 27405] gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 2360] gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum JW20] gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum DSM 1313] Length = 485 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 177/507 (34%), Positives = 271/507 (53%), Gaps = 44/507 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+DL+ L++ ++ + +I +++ DSR +AG +FV I G K DGH F Sbjct: 1 MKLKDLV--------KGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 IPQAI G A +V + D + +R V +TR L+ A +G HP + Sbjct: 53 IPQAIENGTRAFLVQKDVDVPDDATVVR-------VKDTRYALASVADIFFG-HPSSKFN 104 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + G +G + I +S L +F ++G TI++ L TTP L + Sbjct: 105 LVGITGTKGKTTTTYMI--KSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQEL 162 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 S + + V V +E SSH L+ HR+ + G FTNL RDH+D+H+T + Y NAK++L Sbjct: 163 FSEMVQKNVNSVVMEVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKL 222 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F +I D+ + +V+ A C V ++G K L+ V +H+ V Sbjct: 223 FGMC----KKGLINIDNEFGPKVVDSAR---CEVYTMGIDNK-ADLRAVDIVHHPDSVDF 274 Query: 294 SVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +V F D +PG+F VYNAL A G C +G+ + + LEK+ VPGR E + Sbjct: 275 TVVSPWFTGDVRVNIPGKFSVYNALAAIGTCALMGVPFEYIKKGLEKV-TVPGRAEVLDI 333 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + +DYAH+ +SLE IL ++ GR++ VFGCGGDRD+ KRPIMG+I+ LAD Sbjct: 334 -KKDYTVMIDYAHSPDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLAD 392 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 I+T DNPR+EDP+ I +I GI + +R EAI+ A+ +D++++AGK Sbjct: 393 FTIITSDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGK 452 Query: 468 GHETVHIVTNGEKKMSVD-CDIIREIL 493 GHET I+ +K + D +++R+IL Sbjct: 453 GHETYIILK--DKTIHFDEREVVRDIL 477 >gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 487 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 166/511 (32%), Positives = 270/511 (52%), Gaps = 49/511 (9%) Query: 6 LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I K +L+ + +Q + E ++ ++ D+R + G +F+ + D H F +AI Sbjct: 1 MIGKKLVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 QGA +++ + I+ VD++RK +S+ A Y K E ++ VTG Sbjct: 61 KQGATILMIEHEID------QVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTG 114 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALS 175 T+GK+S+ F+ Q+ G + IG TI + + +L TTP I L +L Sbjct: 115 TNGKTSITHFIAQVLSTLGEKTGVIG---TIRNTLEGEKLKTKKINPTTPDAIELQASLK 171 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + +G T+ +E +S L Q+R+ G+ G FTNL +DH++ H T +AY AK++LF+ Sbjct: 172 EMLDKGATYGVMEVTSSALAQNRVYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLKLFK 231 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 I+ DD ++++ + H C+V++ G K A +Q+ + Sbjct: 232 NC----RIGIVNQDDLMAEKIKQEGH---CKVITYGIDKK--------ADFKAEQIHQGL 276 Query: 296 EGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 G DF + FP+PG F VYNAL +++G + +LE L ++ VPGRF Sbjct: 277 TGVDFKLIYLGKQYSINFPVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRF 336 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + + N++G + VDYAH+ +SL+ +L+ + + SG++ VVFGCGGDRD KR MG +A Sbjct: 337 QII-PNTKGVLVVVDYAHSPDSLKQLLQTTKDLISGKLTVVFGCGGDRDTSKRAEMGTMA 395 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK-GNRIEAIRTAIEMLNKQDVL 462 +D+ I+T DNPR+E PE+I A+I GI G E NR AI A+ + D + Sbjct: 396 GAYSDLTIITSDNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAV 455 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+AGKGHET ++ N + + DC+I+ L Sbjct: 456 VIAGKGHETYQLIGNQKWHLD-DCEIVSNYL 485 >gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus LGP32] Length = 494 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/457 (34%), Positives = 243/457 (53%), Gaps = 16/457 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A++ ++ + Sbjct: 27 VEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWLNA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V LS A R+Y ++ VTGT+GK+++ + Q G S +G Sbjct: 87 VPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F + ++ TT S I + + LS L+ + + ++E SSHGL Q R+ + Sbjct: 147 TG--NGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH T + Y AK LF + K A+I DD K + NA Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWVSDLSNAIAV 262 Query: 267 VLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 LS GYQ + + V Q++ PL G+F N LVA ++ Sbjct: 263 SLSPLTGYQ-QSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFSTLLS 321 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +GID ++++ +L V GR E T ++ ++ VDYAHT ++LE L +R SG++ Sbjct: 322 LGIDKQILVDTASQLQPVIGRMELFQTPNKA-KVVVDYAHTPDALEKALAALRVHCSGQL 380 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440 +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ F+ Sbjct: 381 WAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFV 440 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E +R +A++ A+E D++++AGKGHE ++ + Sbjct: 441 EH-DRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKD 476 >gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1002] Length = 948 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 247/482 (51%), Gaps = 12/482 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N L +++ + +S +S + +IF AI G K DG FI AI +GA I+ Sbjct: 5 NFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--- 61 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S Q F I++ L N RK LS + + P+N++AVTGT+GKSS+A F Q Sbjct: 62 --SEQKFEG-IKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118 Query: 136 ICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + IG T +S + + TT PI L+K L+ L Q + +V +EASSHG Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSN-TTLDPIKLSKILNNLKKQKIDNVIMEASSHG 177 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L Q+RLDG+K FTNL DH+DYH+T Y +K+ LFE+LL I + Sbjct: 178 LKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEY 237 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 K + + + N + ++ I + +KQ V I K + L G+ Q+ Sbjct: 238 KNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLQINLIGKIQLK 297 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N +A + +++ K+ V GRFE +GT ++ +DYAHT ++L+ L Sbjct: 298 NLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCL 357 Query: 374 KNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 N++ + RI +VFGCGG+RD+ KRPIMGKIA D +TDDNPR E+P+KIR I Sbjct: 358 TNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAI 417 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I E +R +AI AI L D+LV+AGKGHE N K S +I++ Sbjct: 418 KKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILK 477 Query: 491 EI 492 I Sbjct: 478 NI 479 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 154/366 (42%), Gaps = 37/366 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ ++S P KI S +S+ I+ IF AI GN +DG+L++ +A GA ++ Sbjct: 494 ILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIA 553 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ + + +VVD+T + L+ +S+L I+++TG+ GK+S+ + Sbjct: 554 NNQ----------KKSKKKIVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELL 603 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + S +S+ P S +N+ P ++ L G+ + ++ G Sbjct: 604 GKTL--SKISNVTYSPKSF------NNKFGVPLSLF---NLKKNDEFGIFEIGMDKK--G 650 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + IK G TN+ HI + AK + + ++ DD + Sbjct: 651 EIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINN-IKTNGILVLNQDDRFY 709 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 K A + + + K I+L+K+ +K ++ ++V K F L E Sbjct: 710 NLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKEKSKYKIFVNVNKKQIYFYVRLIFENN 769 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEK-----LHVVPGRFEFVGTNSRGGRIY-VDYAHT 365 + N L+A I+I D+ + LEK + GR + + IY VD ++ Sbjct: 770 LKN-LLATIAIISIFKDT----QKLEKNIFLDYEIAKGRGDIIKVKLNKKSIYIVDESYN 824 Query: 366 SNSLEM 371 SN L + Sbjct: 825 SNPLSL 830 >gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia africae ESF-5] gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia africae ESF-5] Length = 479 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 258/486 (53%), Gaps = 43/486 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA + IV+ Sbjct: 9 FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++D A + I Y K P++++AVTGT+GKSSV S++ Q Sbjct: 69 IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 G + IG T + F N LTT + K L+ G+ ++ EAS Sbjct: 113 YSLLGKKAASIG-TIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEAS 171 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 172 SHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDI 231 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + V HN + ++VG +G + + ++ Q + + ++++F P+ G F Sbjct: 232 EEIEFVKDYLHNHNIKFITVGTKGD-LEIIRLNGSLKGQNINFTFNNREYNFNTPIIGSF 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q N L+A IG V++ L ++ V GR E + + I+VDYAHT ++LE Sbjct: 291 QASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALE 346 Query: 371 MILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ I Sbjct: 347 KALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLI 406 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485 RAEII GI + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D Sbjct: 407 RAEIISGIGKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDD 464 Query: 486 CDIIRE 491 +++R+ Sbjct: 465 AEVVRK 470 >gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum alkenivorans AK-01] Length = 531 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 248/473 (52%), Gaps = 44/473 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +SR ++ +F AI GN DGH+F+ A+ +GA A+V A IR V Sbjct: 36 NSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVVTEEPVEAPIGVAVIR-------V 88 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++R+ L+ AS +G+ E + +TGT+GK++V F + + G + ++G T+ Sbjct: 89 KDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAEAML---GAAGCKVGIVGTV 145 Query: 154 SS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 SS +++ +TTP + L + L+ + GVTH +E SSH L Q R + AG F Sbjct: 146 SSRWPGHEKESSVTTPESLELQETLARMVDAGVTHAIIEVSSHALTQSRPAFCQFDAGVF 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP----AIIYADDAYSKEVMKRAHNAGC 265 TN+ +DH+DYH+ ++YF AK LF++LL + A+I DD + + Sbjct: 206 TNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVINLDDPQGAVLCREVKTP-- 263 Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL G +G I V A + + + + F P G +YN + AAG+ +A Sbjct: 264 -VLCTGLTEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGRHNLYNLMSAAGVGLA 322 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+ V L VPGR E V N ++VDYAHT ++LE +L+ +R ++ +I Sbjct: 323 FGLSLEEVEMGLNAAVNVPGRLEKV-ENGLDRHVFVDYAHTPDALENVLEALRRVSKAKI 381 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------ 438 I VFGCGGDRD+GKRP MG A +D+ +VT DNPRSEDPE I +I+ GI G Sbjct: 382 ITVFGCGGDRDKGKRPKMGAAAARHSDLVVVTSDNPRSEDPEAIIDDILPGISGEGAQRL 441 Query: 439 -------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 F+ + +R +AI TAI D++++AGKGHET IV NG Sbjct: 442 NASYCMMCSRKSAFMVEPDRRKAILTAIMSSGPGDLVLIAGKGHETYQIVKNG 494 >gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase [Rickettsia massiliae MTU5] Length = 484 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 168/497 (33%), Positives = 258/497 (51%), Gaps = 43/497 (8%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA----- 68 +IN +++ + +S +S+ ++ +F I G DG+ FI A+++GA Sbjct: 3 IINMSHNLKQLFQQHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVIT 62 Query: 69 ---EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 + IV+ ++D A + I Y K P+N++AVTGT+G Sbjct: 63 DNKKNIVIDKVIYVKDVQAALYEAIEIF----------------YPKTPKNLIAVTGTNG 106 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSS 179 KSSV S++ Q G + IG T + F DN LTT + K L+ Sbjct: 107 KSSVVSYIAQTYSLLGKKAASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAE 165 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+ ++ EASSHGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L Sbjct: 166 NGIEYLVFEASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLL 225 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AI+ +D + V HN + ++VG +G + + ++ Q + + ++ Sbjct: 226 PNGIAILNSDIEEIEFVKDYLHNHNIKFITVGKKGD-LEITRINGSLKGQNINFTFNNRE 284 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++F P+ G FQ N L+A G V++ L ++ V GR E + I+ Sbjct: 285 YNFNTPIIGSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERIDNT----HIF 340 Query: 360 VDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAHT ++L L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TD Sbjct: 341 VDYAHTPDALAKALTELKNIKLRGSKLSVVFGCGGNRDKAKRSLMGQIAAKHADTIIITD 400 Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DNPR+EDP+ IRAEII GI + E NR EAI+ I L + D L+VAGKGHE I+ Sbjct: 401 DNPRNEDPKLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAGKGHENYQII 460 Query: 476 TNGEKKMSV-DCDIIRE 491 G+KK+ D +++R+ Sbjct: 461 --GDKKLPFDDAEVVRK 475 >gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 7_1] Length = 485 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 250/475 (52%), Gaps = 42/475 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138 + N ++++ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KHNVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G +++G F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +D I FTNL +DH+DYH T + YF AK +LF +L K + ++I DD Y K + Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDNYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++S G G + + + I K+QV F L G+F +YN Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIV 353 Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413 Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ G KK D Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia canadensis str. McKiel] gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel] Length = 478 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 166/475 (34%), Positives = 262/475 (55%), Gaps = 34/475 (7%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ I +S++S++I+ G +F A+ G DG+ FI A+ +GA ++ + Sbjct: 9 FQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLVITDN--------- 59 Query: 85 TIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 NT I + V++ +K L Y K P++++AVTGT+GKSSV S++ Q+ G Sbjct: 60 --EKNTAINKVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQLYSLLG 117 Query: 142 LSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + IG T + F DN LTT + K L+ G+ +++ EASSHGLD Sbjct: 118 EKAASIG-TIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEASSHGLD 176 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q RL K+ FT+ DH+DYH T++ Y AK++LF L + +I+ +D + Sbjct: 177 QTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNSDIEEIEF 236 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + + ++VG +G + + ++ + Q + + + + F P+ G FQ N Sbjct: 237 IKAYLNKHNIKFITVGIKGD-LQITRINSSLKGQNIDFTFNNRKYSFNTPIIGSFQASNL 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE---MI 372 L+AA G+ V+ L + V GR + + I+VDY+HT ++LE + Sbjct: 296 LIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQI----ENTNIFVDYSHTPDALEKALLE 351 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LKNI+ + S ++ V+FGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEI Sbjct: 352 LKNIQVLGS-KLNVIFGCGGNRDKKKRSLMGQIAAKLADNVIITDDNPRLEDPKLIRAEI 410 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I GI +IE NR +AI+ I LN+ D+L++AGKGHE I+ G KK+ D Sbjct: 411 ISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHENYQII--GNKKIPFD 463 >gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter fumaroxidans MPOB] gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobacter fumaroxidans MPOB] Length = 504 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 169/470 (35%), Positives = 249/470 (52%), Gaps = 36/470 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR IQAG +FVA+ G + DG+ FIP+A+ GA A V++ + AT+ Sbjct: 25 VTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGASA-VITETVGFSECPATV--- 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++RK ++ A+ YG HP ++ VTGT+GK++ ++ I +R G S Sbjct: 81 ---VRVSDSRKAMARMAANYYG-HPCAGLKMIGVTGTNGKTTTTLLLESILKRGGHS--- 133 Query: 147 IGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+ + ++ +TTP + L + GVTHV +E SSH L Q R+ Sbjct: 134 VGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMREDGVTHVVMEVSSHALAQGRVAEC 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL +DH+DYH T + YF AK LF E L S A+I DD Y ++++A Sbjct: 194 AFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVINGDDPYGARLVEKA-G 252 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G S G + H+K + + + D PL G +YN L A Sbjct: 253 PGAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHSPLIGRLNLYNILAAVTAS 312 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G+ A + E + L V GR + V + G + VDYAHT +++E L +R +T+G Sbjct: 313 LAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVVVDYAHTPDAMEKSLGCLREMTAG 372 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------------- 428 R++VVFGCGGDRD+GKRP+MGK+A L D+ IVT DNPRSE PE+I Sbjct: 373 RLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDNPRSEVPERIIDEIEPGVRASGLE 432 Query: 429 ---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AE +G G+I + +R AI A+ D + + GKGHET +V Sbjct: 433 RILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTVFIGGKGHETYQLV 482 >gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter thermophilus TK-6] Length = 463 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 263/476 (55%), Gaps = 27/476 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ +S+ ++ G+IFVAI G++ DGH F+ +A+++GA+ ++V + D Sbjct: 7 VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDVGITD-------- 58 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I+ V +TR+ L S YGK + ++ +TGT+GK++ V+ + G+ + + Sbjct: 59 NRIVKVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLV 118 Query: 148 GPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + + TTP P L + G + E SSH LDQ R+ Sbjct: 119 GTIYYRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHFH 178 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+DYH++ + YF AK+RLF+E + A++ +DD Y K +++ Sbjct: 179 IVGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYE--YAVVNSDDEYGKRIVRELKG--- 233 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R ++ G +G F L ++ ++ EGK + F L G+FQ YN + C+ + Sbjct: 234 RAITYGREGDFKILDFDTGFEG-SKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLV 292 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI+ + E L+K++V PGRFE G + VDYAHT ++LE +LK+IR +++GR+I Sbjct: 293 GIEVQAIEEGLKKVYV-PGRFETY--RGDGFLVIVDYAHTPDALENVLKSIRRLSTGRVI 349 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIE 441 +FG GG+RD+ KRPIMG +A +D+ ++T DNPR EDP I +I+ G+ +E Sbjct: 350 TLFGAGGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKDTSKVLVE 409 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 + +R +AI+ AI + + D +++AGKGHE + G K D D+++E+L + L Sbjct: 410 E-DRKKAIKMAISLAEEGDTVLIAGKGHEDYQEI-KGVKYPFKDSDVVKEVLSVRL 463 >gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D11] gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D11] Length = 485 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 250/475 (52%), Gaps = 42/475 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK N + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-----CQ 138 + N ++++ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KHNVSYVLIEEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G +++G F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKVGD----EVFDAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLELGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +D I FTNL +DH+DYH T + YF AK +LF +L K + ++I DD Y K + Sbjct: 184 VDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDK-NDSVINIDDNYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++S G G + + + I K+QV F L G+F +YN Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KVKFALLGDFNLYN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 295 TLGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIV 353 Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 354 AARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVK 413 Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G +I + +R +AI+ A+ M K D++++ GKGHET HI+ G KK D Sbjct: 414 KGFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM 16795] Length = 485 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 253/472 (53%), Gaps = 30/472 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++S DSR ++ +F+ I GN DGH +I AI +GA AI++ S + IR Sbjct: 23 IEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAILIDKKISYKKGITYIR-- 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI----CQRSGLS 143 V+N ++ +++ + + N++ VTGT+GK+S SF++QI C+ + Sbjct: 81 -----VNNVKESMAIIGKNFFQNPCQKINLIGVTGTNGKTSTVSFIKQILGYDCKVGSIG 135 Query: 144 SFQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +I TI+S TTP + + K L+ + + +E SSH L +R+D I Sbjct: 136 TIEIYDGKKTITSIN-----TTPESLDIQKNLNEMIKNNCKYCVMEVSSHALVLNRIDNI 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL +DH+D+H+T + Y NAK +LF +S I DD +E ++ N Sbjct: 191 DYEAAVFTNLTQDHLDFHKTLENYKNAKEKLF---YKTKSINIFNIDDKVGEEFFNKSLN 247 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + + G + + + ++ + + ++ + + P+ G F VYN L A Sbjct: 248 RDIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVYNTLAAITT 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 CI +G+ V++ ++ L V GR + V N + I VDYAHT ++L ILK+ R T Sbjct: 308 CILLGLSREDVIKRVQNLKSVSGRLDKV-ENDKNVNIIVDYAHTPDALLNILKSARLFTK 366 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 RII+VFGCGG+RD+ KRPIMGKIA ADI+I+T DNPR E I +I+ GI ++ Sbjct: 367 NRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITSDNPRFEKEMDIIEDILCGIDKTLD 426 Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 +R ++I+ AIE+ D++++AGKGHE I G+KK D +I Sbjct: 427 NYFVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQI--KGDKKYFFDDKLI 476 >gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ4037] Length = 493 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA+VG+ DG FI AI +GA A++ + + I + Sbjct: 25 VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A +LY ++ VTGT+GK+++ + Q G + +G Sbjct: 85 IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F D + TT + + + L+ L+ Q + ++E SSHGL Q R+ + A Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH T + Y NAK+ LF + + AII DD K+ NA Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNA--I 258 Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +S+ +F H L + + +TI +G+ + PL GEF N ++A + Sbjct: 259 AVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G D + +L +L V GR E +R ++ VDYAHT ++LE L+ +R G+ Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAENRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIVKDMLAGLSKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E QD++++AGKGHE I NGE D + ++LGL Sbjct: 438 VQHDRFKALSYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491 >gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275] Length = 486 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 244/474 (51%), Gaps = 30/474 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +F+ I G DGH +I A +GA ++ ++ ++ Sbjct: 26 VEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKGARVFLIQDDVDFKEDCTYVK----- 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V++TRK ++ A+ + +HP + ++ VTGT+GK+S+ +F+ +I + + ++G Sbjct: 81 --VEDTRKTMAKVAAN-FCEHPADKFDVIGVTGTNGKTSITTFINEILRNC---NKKVGL 134 Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 TI F DN + TTP + L K + G ++E SSH L+ R+D Sbjct: 135 IGTIKIFDGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAMEVSSHSLELSRVDDTNFK 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNA 263 G FTNL DH+D+H+T + Y AK +LF + II DD +++ + + + Sbjct: 195 IGIFTNLTPDHLDFHKTLENYRKAKEKLFHKTT---QANIINVDDEGGRKIYEAIKGLDT 251 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 C + + F K + + + T+ D P+PG+F VYN L C Sbjct: 252 PCYTYGIEHDADFT-AKNIKSDASGVAYTLVTPNHTEDIFIPVPGKFTVYNTLAVIAACE 310 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +GID L L V GRFE V N +G + VDYAHT ++LE +L R G Sbjct: 311 MLGIDKEDYLNSLRNTGGVAGRFETV-PNDKGISVIVDYAHTPDALENVLNTAREFVEGD 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442 +I VFGCGGDRD KRP+MG I L+D I+T+DNPR+EDPE I +I+ G+ E Sbjct: 370 LIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIITNDNPRTEDPELIIKDILAGLDESNENY 429 Query: 443 ---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EAI+ AIE K DV+++AGKGHE I+ + D ++ RE+L Sbjct: 430 KVVMDRKEAIKEAIESAKKGDVILIAGKGHENYQILGTVKHHFD-DKEVAREVL 482 >gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halanaerobium praevalens DSM 2228] Length = 486 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 159/468 (33%), Positives = 251/468 (53%), Gaps = 23/468 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+E+ DSR I+ G +F+AI G K DGH +I QAI GA AI++ + + T Sbjct: 20 KKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGATAIIIEKELEVYEKDITY 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 L V+N+R+ +S+ A + + I + +TGT+GK++ A + +I Q+ + Sbjct: 80 ------LKVENSRQVMSILAKNFFDNPLKEIKLIGITGTNGKTTTAYLLYKILQKYAGQA 133 Query: 145 FQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G S I S NR TTP + L + + + +G+ + +E SSH LD +R++ I Sbjct: 134 ALFGTISNIIGSETLSSNR-TTPESLDLYRYFAQMKKKGIKYGVMEVSSHALDLYRVESI 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL +H+DYHQ+ Y K RLF +L P + AII ADD S+ + K++ Sbjct: 193 DFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKY-AIINADDPNSEYIKKKSE- 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321 + LS K L + + GK +F L G F +YN+L Sbjct: 251 --AQNLSYSLDTKSADLYTTEFKLKQTGLEYKTGGKLVANFKLNLGGLFNIYNSLAVVLT 308 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + +GI+ ++ + L VPGRFE + + ++ VDYAHT +++E ILK I Sbjct: 309 ALVLGIEKNIIKKALADFDSVPGRFEIIDQGQKF-QLIVDYAHTPDAMENILKAALNIKK 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 ++I++FGCGGDRD+ KRP+M +A AD I+++DNPRSE P KI EI G Sbjct: 368 NKLIILFGCGGDRDRSKRPLMAALAEKYADSIIISNDNPRSESPTKIFKEIEKGFSSNFT 427 Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R + I+ AIE+ K D++++ G+GHE ++ E+K+ +D Sbjct: 428 NYSIIPDRKKGIKAAIELAKKDDLVLLLGRGHEKYQVIK--ERKIELD 473 >gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H 168] Length = 499 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 173/480 (36%), Positives = 266/480 (55%), Gaps = 36/480 (7%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ELI ++ P++ R +++I+ + DSR + +F+ I G DGH +I +AI +GA Sbjct: 5 ELIKDIT--PVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V+ L+ +S I + V+++R+ + AS Y +N+ + VTGT+GK+ Sbjct: 63 AVVIEK--DLEVYSEDI----TYIRVNDSRETMGYLASTFYNYPLKNLSLIGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + ++ I + +G F G TI + D L TTP + L + + + GVT Sbjct: 117 TTTYLIKAILEEAG---FNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARMVDSGVT 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H +E SSH LD R++G++ G FTN+ +DH+DYH++ Y AK RLF +L P Sbjct: 174 HAVMEVSSHALDLKRVEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPG-GW 232 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302 A++ DD++S +++K +++ G +G LK + V+ V GK+ F Sbjct: 233 AVVNIDDSHSDKIIKSTTG---NIITYGIEGD-CDLKANEINLSPTGVSYHVSGKESFKI 288 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F VYN+L A +GI+ + +EK+ V GRFE V + + VDY Sbjct: 289 DLNLTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELV-NEGQDFAVVVDY 347 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + +E +L+ R G IIVVFGCGGDRD+GKRP+MGKIA L D I+T DNPRS Sbjct: 348 AHTPDGMENVLETAREFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIITSDNPRS 407 Query: 423 EDP-------EK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 EDP EK I+ E+I P ++++ +R +AI +AI K D++++ GKGHET I Sbjct: 408 EDPMEIIKDIEKGIQEEVISDTP-YVKEPDRRKAIFSAINSARKDDMVIIFGKGHETYQI 466 >gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli IE4771] Length = 278 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 130/251 (51%), Positives = 171/251 (68%) Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H T +AY AKMRLF+ LLPK +PA+I+ADD +S + +K A +AG V +VG +G ++ L Sbjct: 1 HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTL 60 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K+V +KQ I + + F+ PL G+FQV NALVAAGL ++ G++ + + LEKL Sbjct: 61 KRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALEKL 120 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 GR E VG G YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+GKR Sbjct: 121 VGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKR 180 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 PIMG+IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR A+ ML Sbjct: 181 PIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAIAIREAVAMLTSG 240 Query: 460 DVLVVAGKGHE 470 D L+VAGKGHE Sbjct: 241 DTLIVAGKGHE 251 >gi|71082737|ref|YP_265456.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Candidatus Pelagibacter ubique HTCC1062] gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter ubique HTCC1062] Length = 948 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 170/482 (35%), Positives = 247/482 (51%), Gaps = 12/482 (2%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N L +++ + +S +S + +IF AI G K DG FI AI +GA I+ Sbjct: 5 NFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVII--- 61 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S Q F I++ L N RK LS + + P+N++AVTGT+GKSS+A F Q Sbjct: 62 --SEQKFEG-IKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQ 118 Query: 136 ICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + IG T +S + + TT PI L+K L+ L Q + +V +EASSHG Sbjct: 119 LLNLGNKKVASIGTLGVKTKNSLKKVSN-TTLDPIKLSKILNDLKKQKIDNVIMEASSHG 177 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L Q+RLDG+K FTNL DH+DYH+T Y +K+ LFE+LL I + Sbjct: 178 LKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEY 237 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 K + + + N + ++ I + +KQ V I K + L G+ Q+ Sbjct: 238 KNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLKINLIGKIQLK 297 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N +A + +++ ++ V GRFE +GT ++ +DYAHT ++L+ L Sbjct: 298 NLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTCL 357 Query: 374 KNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 N++ + RI +VFGCGG+RD+ KRPIMGKIA D +TDDNPR E+P+KIR I Sbjct: 358 TNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAI 417 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I E +R +AI AI L D+LV+AGKGHE N K S +I++ Sbjct: 418 KKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEILK 477 Query: 491 EI 492 I Sbjct: 478 NI 479 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 155/366 (42%), Gaps = 37/366 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 ++ ++S P KI S +S+ I+ IF AI GN +DG+L++ +A GA ++ Sbjct: 494 ILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIA 553 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 ++ + + +VVD+T + L+ +S+L I+++TG+ GK+S+ + Sbjct: 554 NNQ----------KKSKKKIVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELL 603 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + S +S+ P S +N+ P ++ L G+ + ++ G Sbjct: 604 GKTL--SKISNVTYSPKSF------NNKFGVPLSLF---NLKKNDEFGIFEIGMDKK--G 650 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + IK G TN+ HI + AK + + ++ DD + Sbjct: 651 EIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINN-IKTNGILVLNQDDRFY 709 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 K A + + + K I+L+K+ +K ++ ++V K F L E Sbjct: 710 NLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKERSKYKIFVNVNKKQIYFYVRLIFENN 769 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEK-----LHVVPGRFEFVGTNSRGGRIY-VDYAHT 365 + N L+A I+I D+ + LEK + GR + + + IY VD ++ Sbjct: 770 LKN-LLATIAIISIFKDT----QKLEKNIFLDYEMTKGRGDIIKVKLKKKSIYIVDESYN 824 Query: 366 SNSLEM 371 SN L + Sbjct: 825 SNPLSL 830 >gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister micraerophilus DSM 19965] Length = 498 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 175/505 (34%), Positives = 259/505 (51%), Gaps = 61/505 (12%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ EL+N S + ++ I ++++DSR ++ G +F+ + G DGH ++ +A+ +G Sbjct: 2 KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124 A AI+ S+ + ++ V NTR + A L+ +P ++AVTGT+ Sbjct: 62 AVAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAP-LFFDYPSKSMRMIAVTGTN 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQ 180 GK++ + I +++G ++ G TI + D TTP I L + L + Sbjct: 114 GKTTTTHIISHILKKAG---YKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKA 170 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----E 235 VTHV +E SSH L R++G + F+NL DH+D+H+T Y NAK +LF E Sbjct: 171 KVTHVCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEE 230 Query: 236 ELLPKESPAIIYADDAYSKEVMKRA---------------HNAGCRVLSVGYQGKFIHLK 280 + A I DD YS +M A +A +V+S + GK + K Sbjct: 231 GQVKSNKNACINIDDDYS-HIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGK--NTK 287 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 +C NK+ + L G F VYN + A I+ GID +++ L Sbjct: 288 FICVYKNKE----------YPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFT 337 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 VPGRFE + + VDYAHT + LE IL R IT+G+IIVVFGCGGDRD KRP Sbjct: 338 NVPGRFELIDEGQEFS-VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRP 396 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTA 452 IMG+IA +DIAIVT DNPR+EDP I +++ G+ EK N R AI+ A Sbjct: 397 IMGRIAAKYSDIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEA 456 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTN 477 IE+ D++++AGKGHE I+ N Sbjct: 457 IEIARVNDIVIIAGKGHEDYQILKN 481 >gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia peacockii str. Rustic] Length = 479 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 256/485 (52%), Gaps = 41/485 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA--------EAIVVSSA 76 +++ + +S +S+ ++ IF AI G DG+ FI A+++GA + IV+ Sbjct: 9 FQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKV 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++D A + I Y K P++++AVTGT+GKSSV S++ Q Sbjct: 69 IYVKDVQAALYEAIEIF----------------YPKKPKDLIAVTGTNGKSSVVSYIAQT 112 Query: 137 CQRSGLSSFQIGPTST----ISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 G + IG +F D LTT + K L+ G+ ++ EASS Sbjct: 113 YSLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASS 172 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ RL IK+ FT+ +DH+DYH T++ Y AK++LF L AI+ +D Sbjct: 173 HGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIE 232 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + V HN + ++VG +G + + ++ Q + + ++++F P+ G FQ Sbjct: 233 EIEFVKDYLHNHNIKFITVGTKGD-LEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQ 291 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A IG V++ L ++ V GR E + + I+VDYAHT ++LE Sbjct: 292 ASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTN----IFVDYAHTPDALEK 347 Query: 372 ILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L ++ I ++ VVFGCGG+RD+ KR +MG+IA AD I+TDDNPR EDP+ IR Sbjct: 348 ALTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIR 407 Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DC 486 A II GI + E NR EAI+ I L + D+L+VAGKGHE I+ G+KK+ D Sbjct: 408 AAIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQII--GDKKLPFDDA 465 Query: 487 DIIRE 491 +++R+ Sbjct: 466 EVVRK 470 >gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4] Length = 477 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 173/479 (36%), Positives = 246/479 (51%), Gaps = 26/479 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + ++SDSR + AG +FVA G+ DG +IPQAIA GA A++ + + FS Sbjct: 13 RPSSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVL----WEAEGFSWPADL 68 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSF 145 L V + RK A YG HP + L VTGT+GK+S ++ L+S Sbjct: 69 QAVNLPVKDLRKQAGEIADEFYG-HPSSALWMVGVTGTNGKTSCTQWLTHC-----LNSL 122 Query: 146 QIGPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 Q T+ I + L TTP PI L L+ QG ++E SSHGLDQ R Sbjct: 123 QR-KTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGR 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G+ FTNL RDH+DYH +Y AK RL E P A++ A+DAY ++ Sbjct: 182 VNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQ 239 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G VLS G Q +H + Q++++ D + G F YN L Sbjct: 240 ALRSEGRPVLSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAV 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A+ + + + L VPGR E G N+ + +DYAHT ++LE L+ +R Sbjct: 300 LATLLAMDVPLEAAAQAIATLKPVPGRMEQYGGNAMP-VVVIDYAHTPDALENALQALRE 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 T G++ VFGCGGDRD GKRP+MG IA LAD +VT DNPRSE+P+ I A+I + Sbjct: 359 QTRGKLWCVFGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGR 418 Query: 439 FIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R AI AIE D+++VAGKGHET + G + D D++ +LG + Sbjct: 419 NHQIMVDRRAAIAHAIEQAAPGDIVLVAGKGHETYQEI-KGVRHPYSDVDVVTTLLGAV 476 >gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688] Length = 477 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 174/479 (36%), Positives = 246/479 (51%), Gaps = 26/479 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + ++SDSR + AG +FVA G+ DG +IPQAIA GA A++ + + FS Sbjct: 13 RPSSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVL----WEAEGFSWPTDL 68 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSF 145 L V + RK A YG HP L VTGT+GK+S ++ C L+S Sbjct: 69 QAVNLPVKDLRKQAGEIADEFYG-HPSRALWMVGVTGTNGKTSCTQWLTH-C----LNSL 122 Query: 146 QIGPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 Q T+ I + L TTP PI L L+ QG ++E SSHGLDQ R Sbjct: 123 QR-KTAVIGTLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGR 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G+ FTNL RDH+DYH +Y AK RL E P A++ A+DAY ++ Sbjct: 182 VNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLME--WPGLKLAVLNAEDAYGLTFLQ 239 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G VLS G Q +H + Q++++ D + G F YN L Sbjct: 240 ALRSEGRPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAV 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A+ + + + L VPGR E G N+ + +DYAHT ++LE L+ +R Sbjct: 300 LATLLAMDVPLEAAAQAIATLKPVPGRMEQYGGNAMP-VVVIDYAHTPDALENALQALRE 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 T G++ VFGCGGDRD GKRP+MG IA LAD +VT DNPRSE+P+ I A+I + Sbjct: 359 QTRGKLWCVFGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGR 418 Query: 439 FIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R AI AIE D+++VAGKGHET + G + D D++ +LG + Sbjct: 419 NHQIMVDRRAAIAHAIEQAAPGDIVLVAGKGHETYQEI-KGVRHPYSDVDVVTTLLGAV 476 >gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 10329] Length = 493 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA+VG+ DG FI AI +GA A++ + + I + Sbjct: 25 VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A +LY ++ VTGT+GK+++ + Q G + +G Sbjct: 85 IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F D + TT + + + L+ L+ Q + ++E SSHGL Q R+ + A Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH T + Y NAK+ LF + + AII DD K+ NA Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCDQAIINVDDEVGAAWAKQLTNA--I 258 Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +S+ +F H L + + +TI +G+ + PL GEF N ++A + Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G D + +L +L V GR E +R ++ VDYAHT ++LE L+ +R G+ Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAENRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E QD++++AGKGHE I NGE D + ++LGL Sbjct: 438 VQHDRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491 >gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus Peru-466] gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AN-5034] gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus K5030] Length = 493 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 255/475 (53%), Gaps = 17/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++E+ DSR +Q G FVA+VG+ DG FI AI +GA A++ + + I + Sbjct: 25 VSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTIDIIDD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +D K LS A +LY ++ VTGT+GK+++ + Q G + +G Sbjct: 85 IPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAAVMGT 144 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F D + TT + + + L+ L+ Q + ++E SSHGL Q R+ + A Sbjct: 145 TG--NGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSLSFAA 202 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH T + Y NAK+ LF + + + AII DD K+ NA Sbjct: 203 GVFTNLSRDHLDYHGTMEEYANAKLTLFTQ--HQCAQAIINVDDEVGAAWAKQLTNA--I 258 Query: 267 VLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 +S+ +F H L + + +TI +G+ + PL GEF N ++A + Sbjct: 259 AVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFATLL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G D + +L +L V GR E R ++ VDYAHT ++LE L+ +R G+ Sbjct: 319 SLGFDKSDLLATAAQLQPVLGRMELFQAEHRA-KVVVDYAHTPDALEKALQALRVHCDGQ 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 + +FGCGGDRD GKRP+M +IA L D ++TDDNPRSEDP I +++ G+ E Sbjct: 378 LWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKDMLAGLSKPAEAI 437 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R +A+ A+E QD++++AGKGHE I NGE D + ++LGL Sbjct: 438 VQHDRFKALFYALENAAPQDIILLAGKGHEDYQI-RNGETIHYSDRESAMQLLGL 491 >gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 484 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 170/480 (35%), Positives = 259/480 (53%), Gaps = 40/480 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR+ + G +FVAI G K DG +I AI +GA A++V D +I + Sbjct: 23 IRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERGAVAVLV-------DGEISIDKD 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ V NTRK L+ AS YG + + + VTGT+GK+SV ++ I + + ++ Sbjct: 76 ITLIKVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSVTYMIKSILESQ---NNKV 132 Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D TTP + L + L + +GV +V +E SSH L +R+D Sbjct: 133 GLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECD 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H+T Y NAK +LF ++ +I DD YS ++ N+ Sbjct: 193 FDIAVFTNLTQDHLDFHKTMDDYANAKAKLFR---MAKTACVINIDDDYSSLII---ENS 246 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V++ G + +I K + + T+ +E D +PG F VYN+L A + Sbjct: 247 NAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIPGLFSVYNSLAAISVA 306 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V L+ + + GRFE + ++ + +DYAHT + LE ++K +G Sbjct: 307 FILGIPLQSVKIALKDVKI-KGRFEILDIDAPYN-VVIDYAHTPDGLENLMKAFGEYDTG 364 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FGCGGDRD+GKRP MG++A AD I+T DNPRSEDP +I +EI GI Sbjct: 365 RKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEDPMQIISEIEMGIKNTKCP 424 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---IIREIL 493 IE NR EAI+ A+ + D++++AGKGHET ++ K +D D I++EIL Sbjct: 425 YKIIE--NRKEAIKYALSIAKDNDIVILAGKGHETYQVL----KDRVIDFDEREIVKEIL 478 >gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella veroralis F0319] Length = 485 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 260/483 (53%), Gaps = 32/483 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I V+ DSR I G +F+A+ G + DGH FI +AI QGA A++ L+D T+ Sbjct: 20 EVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQGAVAVL------LEDMPNTL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + V++T A+ YG H ++ VTGT+GK+++A+ + + + G Sbjct: 74 NDNVTYVQVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFREFG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++G ST+ ++ D + TTP PI L + L+ + + G + +E SSH + QHR+ Sbjct: 131 YKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFMECSSHAIHQHRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ FTNL RDH+DYH+T + Y NAK ++F + L K + AI ADD + +M + Sbjct: 191 GLDFTGAIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLSKHAFAITNADDK-NGMIMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + S F K+ H + + + ++GK+ F G+F V N L G Sbjct: 249 TKATIKTYSTKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYG 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379 +G + +L L L V GR E + + G VDYAHT ++LE +L I + Sbjct: 304 AAKMLGKSTDEILLALSTLKSVNGRLEPI-QSPEGFTAIVDYAHTPDALENVLTAIHDVL 362 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 G II V G GG RD+GKRP+M + A+ +D I+T DNPR EDP+ I +++ G+ Sbjct: 363 DNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIINDMMAGLD 422 Query: 438 GFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 K +R EAIRTA M + DV++VAGKGHET + NG K D ++IREI Sbjct: 423 ATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKGHETYQEI-NGVKHHFDDHEVIREI 481 Query: 493 LGL 495 G+ Sbjct: 482 FGI 484 >gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acetohalobium arabaticum DSM 5501] Length = 496 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 262/488 (53%), Gaps = 45/488 (9%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ E++ L I +Q + +I ++ DSR+++ ++FV I G +DGH +I +AI G Sbjct: 2 KNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++V + S ++ D+TR L+ ++ Y +P L V G +G + Sbjct: 62 ATALLVEK-------EVEVDSEVTVIKTDDTRLGLAEVSAAFY-DYPSRELKVVGVTGTN 113 Query: 128 SVAS---FVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 + ++ I +++G IG + +S D++ TTP + + K L+ + +GVT Sbjct: 114 GKTTNTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVT 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242 HV +E SSH LD +R+ I FTN+ +DH+D+H + Y AK +LF L E Sbjct: 174 HVVMEVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEK 233 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300 AII DD +S E ++ A++ +VL+ G + K +LK + +TIS G +F Sbjct: 234 TAIINIDDPHSDEFLEAANS---KVLTYGIE-KDANLKA-------KDITISPTGVEFGL 282 Query: 301 -------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G F VYN L A G +++G+D + LE++ + GRFE + Sbjct: 283 ESTIGEMELDLNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQ 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G I VDYAHT +SL IL+ GRIIVVFGCGGDRD+ KRPIMG++A++L D A Sbjct: 343 DFGVI-VDYAHTPDSLRNILETAHDFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFA 401 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 +VT DNPRSE+P +I A+I GI +I +R EAI IE D++ Sbjct: 402 VVTSDNPRSEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVF 461 Query: 464 VAGKGHET 471 + GKGHET Sbjct: 462 IVGKGHET 469 >gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5] Length = 482 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 169/476 (35%), Positives = 266/476 (55%), Gaps = 31/476 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ ++ +S+ ++ G++F AI G + DGH FI +A +GA A+VV S Sbjct: 21 KRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVS--------- 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S P+++V++TRK L A +GK E N++ +TGT+GK++ +++I +G + Sbjct: 72 SKVPVIIVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTG 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG TI + L TTP I + L G +V E SSH LDQ+R+ Sbjct: 132 LIG---TIYYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYP 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + A FTNL +DH+DYH+T + YF +K +LF E K II ADD Y K ++K H Sbjct: 189 TRFEAVLFTNLSQDHLDYHKTMEDYFASKAKLFTEYESK--VKIINADDTYGKRLLKITH 246 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +++ G +G L + I+ +GK+++F L G+FQ YN A Sbjct: 247 G---EIITYGKKGDLKILNFRTDFRG-SALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAY 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + GI+ L+ L+ ++V PGRFE V +S + +DYAHT +++E +L+ R ++ Sbjct: 303 ALWKGIEPDLIQRALKCVNV-PGRFEVV--HSDKFTVIIDYAHTPDAVENVLRTARKLSK 359 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438 G++I VFG GG+RD+ KRP+MGK A +D+ I+T DNPR E+PEKI +I+ GI Sbjct: 360 GKLISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDK 419 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I + +R +AI+ AI+M + D++ + GKGHE + G K D +++EILG Sbjct: 420 VIIEADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEI-KGVKYPFSDAQVVKEILG 474 >gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 498 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 249/465 (53%), Gaps = 27/465 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G +FVA+ G+ DGH F QA+ +GA A++V + D A+I P Sbjct: 26 ITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEE--PVADVPASI----PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV +TR + +L A RL+G ++ VTGT+GK++V V+ + +G + IG Sbjct: 80 VVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTV 139 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + S + TTP + + + L G TH +E SSH L + R G+ +F Sbjct: 140 GAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEVSSHALVERRAAGVSFACAAF 199 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESP-AIIYADDAYSKEVMKRAHN 262 TNL +DH+D+H T + Y AK LF L P S A+I ADD +S VM A Sbjct: 200 TNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWSP-VMAEASA 258 Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A +L+ G + + + V + + + F+ PL G F VYN L A + Sbjct: 259 AP--ILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNTLAAVAI 316 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + G+ ++ + E + VPGR E + + ++VDYAHT + LE +L ++R Sbjct: 317 ALVEGLAASEIQEGIRSYPSVPGRMERI-DEGQPFSVFVDYAHTPDGLENVLASVREFAP 375 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 R++VV GCGGDRD+ KRP M ++A+ LAD AI T DNPRSEDP I AE+ G+ P + Sbjct: 376 ARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILAEMRGGVEPAYA 435 Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E+ +R AI AI DV+V+AGKGHE I+ EK+ Sbjct: 436 HKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGHEDYQII-GAEKR 479 >gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC586] Length = 495 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA A++ + R Sbjct: 27 ITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIEYREA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPDTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L +L V GR E + +I VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPQLRPVIGRMELFQREQKA-KIVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVVGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 443 HRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 >gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio ammonificans HB-1] Length = 485 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 180/494 (36%), Positives = 266/494 (53%), Gaps = 29/494 (5%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P L+ + + + ++ +++DSR ++ G++F A+ G K +G+ F +A+ +GA A Sbjct: 3 LPHLLKGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKGASA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127 +V S + SA + P+L+V+N+RK L+ A+ LYG +P+ IL VTGT+GK+ Sbjct: 63 VVTDSRKWFEKLSA---AGKPVLLVENSRKALATAAANLYG-NPQKELKILGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + R G+ + IG S S + TTPS + L K L L ++G V Sbjct: 119 TTTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVV 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 E SSHGL QHR+ GI+ FTNL +H+DYH + YF AK +LF L K S ++ Sbjct: 179 CEVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFR--LSKLS--VV 234 Query: 247 YADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD Y + RA N G + ++ G + + ++ AI + V I Sbjct: 235 NRDDPYGTTLSALRAVNGG-KTVTYGKKSRNYTIE---AIDPEGSVLIGTPKGAVKVKHN 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L GEF YN A L +G + + E + + V PGR E V ++VDYAHT Sbjct: 291 LKGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKV-PGRMEEVVPG-----VFVDYAHT 344 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L+ L ++ SGR+IVVFGCGGDRD+ KRP+MGKIA LAD IVT DNPRSE P Sbjct: 345 PDALQKALNALKKACSGRLIVVFGCGGDRDRTKRPVMGKIAATLADSVIVTSDNPRSEPP 404 Query: 426 EKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E+I E++ GIP + +R AI A+ + D L++AGKGHE V G+K Sbjct: 405 EQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKGHENYQEVA-GKK 463 Query: 481 KMSVDCDIIREILG 494 D + +RE+ G Sbjct: 464 LPFSDQETVRELYG 477 >gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC 43184] Length = 490 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 167/507 (32%), Positives = 270/507 (53%), Gaps = 43/507 (8%) Query: 10 DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + ELI+ L + + + +I+ + SDSR ++ G++FVA+ G DGH +I AI +GA Sbjct: 2 ELKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125 AIV +L D + + P+ + V ++ L S Y +N++ VTGT+G Sbjct: 62 AAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L ++ + G Sbjct: 122 KTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAG 178 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ LP Sbjct: 179 CEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPTS 237 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLS------VGYQGKFI--HLKKVCAIHNKQQVTI 293 + A+ ADD K + N R L+ ++GK + H + + N ++V Sbjct: 238 AFALTNADD---KAGLVMLQNTAARKLTYSLRTLADFKGKILESHFEGTEMLVNGREV-- 292 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + G F YN L G +++G D VL L LH V GRF+ + + Sbjct: 293 ---------MTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTI-QSP 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 +G VDYAHT ++L +L +I + +GR+I V GCGG+RD+GKRPIM K A L+D Sbjct: 343 KGYTAIVDYAHTPDALTNVLNSIHEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAG 466 I+T DNPR E+P++I +++ G+ + +R +AI+TA + K DV++VAG Sbjct: 403 QLILTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAG 462 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE V G K D + ++EI Sbjct: 463 KGHEDYQEV-KGVKHHFDDREQLKEIF 488 >gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. SMY] gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168] gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus subtilis subsp. subtilis str. 168] gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus subtilis subsp. natto BEST195] gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis BSn5] Length = 494 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 169/476 (35%), Positives = 246/476 (51%), Gaps = 50/476 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ +I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 20 QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 N P+++V + + LS+ + YG+ + + + +TGT+GK+S V +I +++G Sbjct: 74 ---NVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + IG T+ D L TTP + L K ++ + V +E SSH L R+ Sbjct: 131 TGLIG---TMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSK 254 G FTNL +DH+DYH+T Y +AK LF +L E P A++ ADD S Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247 Query: 255 --EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303 E + AH + + G + + K ++I+ +G FD + Sbjct: 248 YFEKVTAAH-----ISTYGIKNDADVMAK--------NISITAQGTSFDLVTNKGTKHIT 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F VYN L A CIA GI ++ E +E+LH V GRFE V I VDYA Sbjct: 295 MSLVGQFNVYNVLAAVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVI-VDYA 353 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SLE +L+ R +T G++ VV GCGGDRD+ KRP M KIA++LAD I T DNPRSE Sbjct: 354 HTPDSLENVLETCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413 Query: 424 DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DP I ++ G+ + NR +AI AI K DV+++AGKGHET + N Sbjct: 414 DPRAILRDMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGN 469 >gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacterium psychrophilum JIP02/86] Length = 486 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 173/506 (34%), Positives = 271/506 (53%), Gaps = 38/506 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++++YK E+++ + + ++ + DSR IQ+ +FVAI G+ +GH FI Sbjct: 1 MLLKEILYKVALEVVHGST-------DVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AIA GA+AIV + + S + V +T L+ A+ Y + ++ Sbjct: 54 DKAIALGAKAIVCDT------LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKAL 174 VTGT+GK+++AS + Q+ +++G F++G ST+ + TTP + + L Sbjct: 108 GVTGTNGKTTIASLLYQLFKKAG---FKVGLLSTVKILVDEIEHKATHTTPDSLTINYYL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G + +E SSHG+ Q R +G++ + G FTNL DH+DYH T Y + K F Sbjct: 165 DKMVEAGCQYCFMEVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFF 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L PK + A+ DD +M+ N R LS Y K K I N Q + Sbjct: 225 DNL-PKNAFALSNIDDKNGAVMMQ---NTKARKLS--YALKTYADYKAIIIEN-QLSGLL 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ + + L G F YN L G+ I +GI+ VL L +L V GRF+F+ + Sbjct: 278 LKINEQEVWVRLIGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSGRFQFIVSKQN 337 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 I VDYAHT ++LE +L I I + ++I + GCGGDRD+ KRPIM IA ++D Sbjct: 338 ITAI-VDYAHTPDALENVLSTINDIRTRNEQLITIVGCGGDRDKTKRPIMANIASQMSDK 396 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AI+T DNPR+E+PE I AE+ GI ++ +R +AI+TA ++ D++++AGK Sbjct: 397 AILTSDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGK 456 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHET + NG + D I++EIL Sbjct: 457 GHETYQEI-NGVRHDFDDMQIVKEIL 481 >gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chryseobacterium gleum ATCC 35910] Length = 486 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 174/506 (34%), Positives = 262/506 (51%), Gaps = 48/506 (9%) Query: 13 ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+N++ + + R+I E+ DSR + ++VA+ G DGH FI AI +GA A+ Sbjct: 5 ELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAAAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 V ++ T+ N ++V ++ K L AS YG + + + VTGT+GK+SV Sbjct: 65 VC------EELPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKTSV 118 Query: 130 ASFVQQICQRSG-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ + + + G LS+ +I I TTP I + + L+ +G Sbjct: 119 STLLFDVFKNLGYPAALLSTVEIRIGEEIIPATH----TTPDVITINRILAEAVEKGCEF 174 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SSHG+ Q+R++G+ FTNL DH+DYH+T + Y K R F+EL + A Sbjct: 175 AFMEVSSHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDEL-EDTAIA 233 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGK 298 I DD N + + + K LK + H K + ++ GK Sbjct: 234 ITNVDDK----------NGNVMLQNTKAKKKSYALKTMADYHGKLLEVDFNGMLLNFNGK 283 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 +F L G+F VYN L+ G+ +G + +L+ + KL V GRFE S GG Sbjct: 284 EF--WTTLTGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETF--KSDGGIF 339 Query: 359 Y-VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE IL +I I + R+I VFGCGGDRD KRP MG IA + +AI+ Sbjct: 340 FIVDYAHTPDALENILDSINDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAII 399 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 T DNPR+EDP +I EI G+ + +R EAI+ AI+ +D+++VAGKGHE Sbjct: 400 TSDNPRTEDPTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKGHE 459 Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496 T + NG K D ++I E+ L+ Sbjct: 460 TYQEI-NGVKHHFDDKEVINELWKLM 484 >gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mahella australiensis 50-1 BON] Length = 484 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 262/487 (53%), Gaps = 53/487 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR + G +FVAI G K DGH FI QAI GA A+VV+ L D + ++ Sbjct: 23 IKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVVVTRDVPLPDGVSVVK-- 80 Query: 90 TPILVVDNTRKFLSLFA-SRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 V+++R LSL A SR + +P+ +++ VTGT+GK+SV V+ I ++SG Sbjct: 81 -----VEDSR--LSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVKSILEQSGR--- 130 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + D L TTP L ++ G+ V +E SSH L +R+ G Sbjct: 131 KVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEVSSHSLALNRVAG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLP---KESPAIIYADDAYSKEV 256 + G FTNL DH+D+H YF AK++LF+ L+ +S + D SK V Sbjct: 191 CRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQNSGLIATNVDDSYGVKLKDMFVSKTV 250 Query: 257 M-----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + AH +LS F I + G + +PG F Sbjct: 251 YTYGIEREAHVTASNILSDAKGSTF---------------DIDICGDRRPVIINIPGRFS 295 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYNAL AA C A+G+ + + + L+ L VPGRFE +GT++ + +DYAHT + LE Sbjct: 296 VYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDT-DFTVIIDYAHTPDGLEN 354 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 ILK+++ I GR+I +FGCGGDRD KRPIMG+I AD I+T DNPRSEDP I + Sbjct: 355 ILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTSDNPRSEDPMAIIRQ 414 Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-C 486 I GI +I NR +AI+ ++ K D+L++AGKGHET I+ +K + D Sbjct: 415 IEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKGHETYQILK--DKTIHFDER 472 Query: 487 DIIREIL 493 +++RE+L Sbjct: 473 EVVRELL 479 >gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 3_1_44] Length = 496 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 250/468 (53%), Gaps = 33/468 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V++DSR ++AG +F+A+ G DGH ++ +AI GA A++VS + Sbjct: 25 EILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSK-------PVDVSG 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ V++TR + + + +P N ++ VTGT+GK++ + ++ I + G Sbjct: 78 DVCVITVEDTRAAMMVCVPYFF-DYPANSMRMIGVTGTNGKTTTSHMIRHILKAQG---H 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G T+ D TTP + L L + +GVT+ +E SSH L R+ G Sbjct: 134 KVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVSSHALALGRVSG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 ++ FTNL +DH+D+H+T + Y AK +LFE++ + A+I DDAY V Sbjct: 194 VEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRV 253 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +++ A S+ G ++ V + T+S +G D+ G F VYN L Sbjct: 254 VEKT-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G C+ GI + + L+ VPGRFE + + + VDYAHT + LE IL+ Sbjct: 312 AAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTA 370 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + I RIIVVFGCGGDRD KRPIMG+IA D+ VT DNPR+EDP +I ++ G+ Sbjct: 371 KAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGV 430 Query: 437 PGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 431 KDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKGHEDYQILKD 478 >gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Dialister microaerophilus UPII 345-E] Length = 498 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 172/504 (34%), Positives = 256/504 (50%), Gaps = 59/504 (11%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ EL+N S + ++ I ++++DSR ++ G +F+ + G DGH ++ +A+ +G Sbjct: 2 KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124 A AI+ S+ + ++ V NTR + A L+ +P ++AVTGT+ Sbjct: 62 AIAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAP-LFFDYPSKSMRMIAVTGTN 113 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQ 180 GK++ + I +++G ++ G TI + D TTP I L + L + Sbjct: 114 GKTTTTHIISHILKKAG---YKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKA 170 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----E 235 VTHV +E SSH L R++G + F+NL DH+D+H+T Y NAK +LF E Sbjct: 171 KVTHVCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEE 230 Query: 236 ELLPKESPAIIYADDAYSK--------------EVMKRAHNAGCRVLSVGYQGKFIHLKK 281 + A I DD YS +A +V+S + GK + K Sbjct: 231 GQVKPNKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGK--NTKF 288 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 +C NK+ + L G F VYN + A ++ GID +++ L Sbjct: 289 ICVYKNKE----------YPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTN 338 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 VPGRFE + + VDYAHT + LE IL R IT+G+IIVVFGCGGDRD KRPI Sbjct: 339 VPGRFELIDEGQEFS-VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPI 397 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAI 453 MG+IA +DIAIVT DNPR+EDP I +++ G+ EK N R AI+ AI Sbjct: 398 MGRIAAKYSDIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAI 457 Query: 454 EMLNKQDVLVVAGKGHETVHIVTN 477 E+ D++++AGKGHE I+ N Sbjct: 458 EIARVNDIVIIAGKGHEDYQILKN 481 >gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris DP4] gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio vulgaris DP4] Length = 486 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 249/474 (52%), Gaps = 17/474 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ +DSR + G +FVA+ G DG FI QA+AQGA +VV A LQ + Sbjct: 19 LPQIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA-TMVVCRADGLQHLP---EAA 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V D+ R L YG P ++ VTGT+GK+++ ++ + +G + Sbjct: 75 FAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVL 134 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G S + LTTP + L + L ++ GV +E SSH LDQ R+ GI+ Sbjct: 135 GTVSYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAG 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265 TNL +DH+DYH + YFNAK RLF EL + ADD + + ++ A G Sbjct: 195 AVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGF 254 Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + +H + + + + EG+ ++ PL G N L + + Sbjct: 255 ALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLG 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ A + HLE VPGR E + TN RG ++VDYAHT ++L +L+ +R + RI Sbjct: 315 LGLSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRI 372 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441 + VFGCGG+RD+ KRP+MG AD+A++T DNPR EDP I ++ G+ G + Sbjct: 373 VTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVA 432 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 + +R +AI A+EML D L+VAGKGHE V G++K+ D IREILG Sbjct: 433 EADRRKAIALALEMLRPGDALLVAGKGHEDYQQV--GDRKLPFSDQQTIREILG 484 >gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Aliivibrio salmonicida LFI1238] Length = 493 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 171/495 (34%), Positives = 257/495 (51%), Gaps = 22/495 (4%) Query: 17 QLSIFPMQWRE-RKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 QLS + W E ++ E+SS DSR + G +FVAI G+ DG FIP AI QGA A++ Sbjct: 3 QLSELLLPWCELNQVVEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQGASAVL 62 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSS 128 S + + + TPI+ +D LS A R Y H E ++ +TGT+GK++ Sbjct: 63 AQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFY--HAEQRKMQLVGITGTNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + Q G + +G T + + + TT SPI + + L+ L + G ++ Sbjct: 121 ISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAKLTAL 180 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGL Q R++ + A FTNL RDH+DYH Y AK LF PK S II Sbjct: 181 EISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYS--IIN 238 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ADD +K NA L+ G + GK + V + Q++++ + D Sbjct: 239 ADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISLNSDWGTADLS 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL G F N LVA +++G D + + KL V GR E + ++ VDYA Sbjct: 299 VPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELFSSEGNA-KVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L+ L+ +R G++ +FGCGGDRD GKRP+M IA AD+ I++DDNPRSE Sbjct: 358 HTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVIILSDDNPRSE 417 Query: 424 DPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I +++ G+ P R +A + A+ +K D++++AGKGHE ++ E Sbjct: 418 DPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKGHEEYQVLAT-ET 476 Query: 481 KMSVDCDIIREILGL 495 D + +++LGL Sbjct: 477 IHYSDRETAQKLLGL 491 >gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aggregatibacter segnis ATCC 33393] Length = 488 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 166/474 (35%), Positives = 244/474 (51%), Gaps = 15/474 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E++ DSR +AG +FVAI G++ DG +IPQA+ GA A++ + Q Sbjct: 18 LTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQVRYEQQ 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + LS A YG+ + ++ VTGT+GK++ A + Q + G +S + Sbjct: 78 VPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGHTSAVM 137 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + ++ TT S + + +L+ +QG ++E SSHGL QHR++ + A Sbjct: 138 GTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQHRVEAVHFSA 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHN 262 FTNL RDH+DYH T + Y AK RLF EL + II ADD A+ E M A Sbjct: 198 AVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHH--IIDADDPVGAAWLAE-MPEAVA 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Q K++ V H + + + L G F V N L+ Sbjct: 255 VSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNLLLIMATL 314 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A+G D A ++ KL V GR E + + + VDYAHT ++LE L+ R G Sbjct: 315 LALGYDLAELIGSAHKLTGVCGRMEMLHAPHKP-TVIVDYAHTPDALEKALQAARLHCHG 373 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440 ++ +FGCGGDRD GKRP+M KIA LAD I TDDNPR+ED +I A+I+ G P + Sbjct: 374 KLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDHTQIMADILKGFIHPQAV 433 Query: 441 EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + R EAI TAI+ + DV+++AGKGHE I+ + S D ++ R L Sbjct: 434 QVIHQREEAIATAIQSAVENDVILIAGKGHEDYQIIGKTKHHFS-DQEVARHYL 486 >gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 247/459 (53%), Gaps = 20/459 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G++ D F+PQ+I+ GA A+V+ + + S ++N P++ Sbjct: 24 DSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQWQNNVPVIHY 83 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + LS A + Y +HP ++ VTGT+GK++V+ + Q G + +G Sbjct: 84 YHLSANLSALAGKFY-EHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKAAVMGTIGN 142 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + ++ + TT S + + + L+ +G S+E SSHGL QHR++ +K A FTN Sbjct: 143 GLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEALKFKAAIFTN 202 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVL 268 L RDH+DYH+T + Y AK R F +L P+ I+ ADD + N CR Sbjct: 203 LSRDHLDYHETMEKYAEAKKRFFVDLAPELQ--ILNADDPIGAAWLSELPNGIAVSCRPD 260 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 ++++ ++C H + ++ + PL G F V N L+A + +A+G Sbjct: 261 FQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLATAVLLALGYS 320 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ++ + +L V GR E + + G+ + VDYAHT ++LE L R G++ Sbjct: 321 FDELIRTVSQLKGVNGRMELI---KKAGKPTVIVDYAHTPDALEKALNAAREHCKGKLWC 377 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443 +FGCGGDRD GKRP+M K A AD+ IVT DNPR+EDP KI A+I+ G + G Sbjct: 378 IFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSRMEDVGVIP 437 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +R EAI+ IE + DV+V+AGKGHE I+ G+K + Sbjct: 438 DREEAIKFTIENAVENDVIVIAGKGHENYQII--GDKTL 474 >gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia succiniciproducens MBEL55E] gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E] Length = 488 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 165/476 (34%), Positives = 259/476 (54%), Gaps = 15/476 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N ++ DSR ++ G +FVAI G+ DG FIPQAI+ GA A++ + + + ++ Sbjct: 18 KLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQN 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A + Y K P ++ VTGT+GK++V+ + Q Q G Sbjct: 78 QIPVISYYHLSEHLSDIADQFY-KAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + + TT S I + +L+ QG ++E SSHGL QHR++ + Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 AG FTNL RDH+DYH + + Y +AK RLF EL ++ II ADD + ++ +A Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQK--IINADDEIGVQWLRELPDAV 254 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP--LPGEFQVYNALVAAGL 321 + YQ + KV A+ N Q TI+ + L G F V N ++ Sbjct: 255 AVSCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLAT 314 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++G +L+ + +L V GR E + + + VDYAHT ++LE L+ R + Sbjct: 315 LLSLGYSLDELLKTVSQLTGVCGRMEMLHAAHKP-TVIVDYAHTPDALEKALQAARAHCT 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439 GR+ VFGCGGDRD+GKRP+M ++A AD IVTDDNPR+ED +I +I+ G P Sbjct: 374 GRLWCVFGCGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIVAGFKRPES 433 Query: 440 IE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R +AIRTA++ + DV+++AGKGHE I+ + + S D + +++ LG Sbjct: 434 VNIVYDREQAIRTAVQSAVENDVILIAGKGHEDYQIIGHTKHHFS-DQEAVKKYLG 488 >gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM223] Length = 495 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G S +G Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKSAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + S+E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTSLETSSHGLVQGRVKKLNFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267 F+NL RDH+DYH T AY AK LF E + AII DDA + +K+ H G + Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L +L V GR E + ++ VDYAHT ++LE L+ + +G++ + Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALHVHCTGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 FGCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLAGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR +A A++ QD++++AGKGHE ++ N Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 >gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 3_1_27] Length = 485 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 249/476 (52%), Gaps = 44/476 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S V+++ Sbjct: 71 KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242 Query: 259 RAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++S G +G ++ + + KQ + F L G+F +Y Sbjct: 243 EFIVDNSEIISYGIDSGDLEGDYLDDGYIDIKYKKQVEKVK---------FALLGDFNLY 293 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 294 NTLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVI 352 Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 353 VAARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDV 412 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 413 KKGFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_36A2] Length = 485 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 249/476 (52%), Gaps = 44/476 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S V+++ Sbjct: 71 KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242 Query: 259 RAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++S G +G ++ + + KQ + F L G+F +Y Sbjct: 243 EFIVDNSEIISYGIDGGDLEGDYLDDGYIDIKYKKQVEKVK---------FALLGDFNLY 293 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 294 NTLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQNYKVIVDYAHTPDALVNVI 352 Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R I + RII +FGCGGDRD+ KRPIM K+ DL+DI I+T DNPR+E+PE+I ++ Sbjct: 353 VAARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDV 412 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 413 KKGFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia typhi str. Wilmington] gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington] Length = 498 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 175/503 (34%), Positives = 269/503 (53%), Gaps = 59/503 (11%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQL ++ KIN +S++S+ ++ +F A+ G DG+ FI A+ GA ++ Sbjct: 11 LNQL------FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE 64 Query: 75 SAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + + NT ++ V++ + L Y K P+N+++VTGT+GKSSV S Sbjct: 65 N-----------KKNTVIDKVIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 113 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185 ++ Q + IG T + F +N LTT + K L+ + ++ Sbjct: 114 YIAQTYFLLRKKAAFIG-TIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYL 172 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + EASSHGL+Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI Sbjct: 173 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 232 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D + V N + ++VG +G + + K+ T S+ G++ DF+F Sbjct: 233 LNSDIEEIEFVKDYLRNNNVKFITVGKKGD-VQITKI---------TCSLTGQNIDFIFN 282 Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355 + G FQ N L+AA G ++E L K+ V GR E + GTN Sbjct: 283 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMERIDGTN--- 339 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I+VDY+HT ++LE L ++ I G++ V+FGCGGDRD+ KR +MGKIA AD Sbjct: 340 --IFVDYSHTPDALEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNV 397 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+TDDNPR EDP+ IR EII GI + E +R EAI+ I L + D+L++AGKGHE Sbjct: 398 IITDDNPRFEDPKLIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHEN 457 Query: 472 VHIVTNGEKKMSV-DCDIIREIL 493 IV G+KK+ D +++R+ L Sbjct: 458 YQIV--GDKKLPFDDSEVVRKYL 478 >gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Rickettsia typhi] Length = 492 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 175/503 (34%), Positives = 269/503 (53%), Gaps = 59/503 (11%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQL ++ KIN +S++S+ ++ +F A+ G DG+ FI A+ GA ++ Sbjct: 5 LNQL------FKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE 58 Query: 75 SAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + + NT ++ V++ + L Y K P+N+++VTGT+GKSSV S Sbjct: 59 N-----------KKNTVIDKVIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVS 107 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHV 185 ++ Q + IG T + F +N LTT + K L+ + ++ Sbjct: 108 YIAQTYFLLRKKAAFIG-TIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYL 166 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + EASSHGL+Q RL K+ SFT+ +DH+DYH T++ Y AK++LF + L AI Sbjct: 167 AFEASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAI 226 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + +D + V N + ++VG +G + + K+ T S+ G++ DF+F Sbjct: 227 LNSDIEEIEFVKDYLRNNNVKFITVGKKGD-VQITKI---------TCSLTGQNIDFIFN 276 Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRG 355 + G FQ N L+AA G ++E L K+ V GR E + GTN Sbjct: 277 NIIYNLHTLIIGSFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMERIDGTN--- 333 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 I+VDY+HT ++LE L ++ I G++ V+FGCGGDRD+ KR +MGKIA AD Sbjct: 334 --IFVDYSHTPDALEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNV 391 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+TDDNPR EDP+ IR EII GI + E +R EAI+ I L + D+L++AGKGHE Sbjct: 392 IITDDNPRFEDPKLIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHEN 451 Query: 472 VHIVTNGEKKMSV-DCDIIREIL 493 IV G+KK+ D +++R+ L Sbjct: 452 YQIV--GDKKLPFDDSEVVRKYL 472 >gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM 4252] Length = 511 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 170/472 (36%), Positives = 261/472 (55%), Gaps = 33/472 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSA 84 RK+ ++ +S+ +Q +FVA+ G + DGH FI QAI +GA A+V V A++ + A Sbjct: 35 RKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGEFVPEAFAERFPKA 94 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 + + V N+R+ L + A+ ++ +P ++ +TGT+GK++ A V + G Sbjct: 95 SF------VQVSNSRRALGILAT-IFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAIG 147 Query: 142 LSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + IG + F + TTP PI L L ++ + +E SSH L+Q R Sbjct: 148 QETGLIG--TVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQER 205 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G+ FTNL RDH+DYH + +AY AK +LF+ L + + +Y D S M Sbjct: 206 VAGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRAT--ALYNIDDPSGPAMV 263 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A C +S G Q + ++ H+ + +T++++G+ F FPL G F YN L A Sbjct: 264 ADTQACC--ISYG-QREDAQIRMRIVGHSLEGLTLNIDGR-FQ-RFPLVGCFNAYNLLAA 318 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G+ A+G+D L+LE L ++ +PGRFE T G VDYAHT ++LE +L+ IR Sbjct: 319 YGVGRAMGLDPDLLLEALGRVPQIPGRFERF-TFEDGTTAIVDYAHTPDALENVLRTIRE 377 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + R+ VFGCGG+RD+GKRP+MG +A LAD IVT DNPRSEDP +I +I G+ Sbjct: 378 VMPEGARLWCVFGCGGERDRGKRPMMGAVAERLADCVIVTSDNPRSEDPLQIFEDIRQGM 437 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R AI A ++ DV++VAGKGHE I+ G +K+ +D Sbjct: 438 RHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKGHEAYQII--GTEKIPLD 487 >gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1] Length = 485 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 252/488 (51%), Gaps = 50/488 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ L M +I E+ D+R + +F+ I G DGH F A +GA AI+ Sbjct: 6 LLEALPFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILA 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVAS 131 + + P+++V NT++ ++L A R YG+ ++ +TGT+GK++ + Sbjct: 66 EKPVDV---------DIPVIIVRNTKRAMALLADRFYGQPSRKFRLVGITGTNGKTTTSH 116 Query: 132 FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 +++I + +G ++ IG I + + TTP + L K ++++GVT +E S Sbjct: 117 IIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVMEVS 176 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AI 245 SH L + R+ G FTNL +DH+DYH+T Y AK LF +L P++ P AI Sbjct: 177 SHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAI 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ADDA SKE ++ + + F+ + + + G F + P Sbjct: 237 LNADDAASKE-FEQVTAVPVITYGIDHDADFM----------AENIDMHARGTTFTLVTP 285 Query: 306 ---------LPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 L G+F VYN L +AAG+ + +DS V++ E + V GRFE V Sbjct: 286 FEKREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDS--VIKTAEAMEGVRGRFELVN---- 339 Query: 355 GGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 GG+ + VDYAHT +SLE +LK IR +I VV GCGGDRD+ KRP+M +IA A Sbjct: 340 GGQDFSVIVDYAHTPDSLENVLKTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAH 399 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I T DNPRSEDP I E+ G+ G + +R EAI+TAI DV+++AGKGH Sbjct: 400 YPIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKGH 459 Query: 470 ETVHIVTN 477 ET I+ N Sbjct: 460 ETYQIIGN 467 >gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter lovleyi SZ] gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ] Length = 506 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 175/484 (36%), Positives = 257/484 (53%), Gaps = 41/484 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR + AG +F A+ G+K DGH FI QA+ ++A L+D S Sbjct: 23 VSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVT------AGAAAVVLEDASYA-PEQ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L V N R+ ++L A+R +G ++ + +TGT+GK++ + ++ I +GL + Sbjct: 76 VPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKTTTSYLLEGILTAAGLPPAVL 135 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G S + + TTP L L+ G +E SSH L+Q R+DG Sbjct: 136 GTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFVMEVSSHSLEQRRVDGSVFDI 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SP---AIIYADDAYSKEVMKRAH 261 G FTNL RDH+DYH T QAY +AK RLF ELL + +P A+I ADD ++E ++ Sbjct: 196 GVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRHAVINADDPAAEEFIR--- 252 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A C V+ G G + +++ + N + + F L G F + N L AA Sbjct: 253 AAACPVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQPFHSRLLGGFNLSNILAAAA 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A+G+ +++ +E+ VPGR E V N G VDYAHT ++LE +L ++ + Sbjct: 313 AGVALGLPLQAIIQGIEQHTTVPGRLERV-ENRAGVTCLVDYAHTGDALENVLSTLKDLA 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436 RII VFGCGGDRD GKRPIMG+IA +D+A+VT DNPR+EDP +I +I GI Sbjct: 372 GARIITVFGCGGDRDNGKRPIMGRIAAGYSDLAVVTSDNPRTEDPHEILRQIRAGILPLG 431 Query: 437 ---------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 GF+ NR EAIR A+ + D+L++AGKGHE I+ G+ K Sbjct: 432 LREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARPGDILLLAGKGHEDYQII--GQTK 489 Query: 482 MSVD 485 D Sbjct: 490 QHFD 493 >gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris RCH1] Length = 486 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 249/474 (52%), Gaps = 17/474 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ +DSR + G +FVA+ G DG FI QA+AQGA +VV A LQ + Sbjct: 19 LPQIRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGA-TMVVCRADGLQHLP---EAA 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V D+ R L YG P ++ VTGT+GK+++ ++ + +G + Sbjct: 75 FAVAVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVL 134 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G S + LTTP + L + L ++ GV +E SSH LDQ R+ GI+ Sbjct: 135 GTVSYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAG 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265 TNL +DH+DYH + YFNAK RLF EL + ADD + + ++ A G Sbjct: 195 AVLTNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGF 254 Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + +H + + + + EG+ ++ PL G N L + + Sbjct: 255 ALTGAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLG 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ A + HLE VPGR E + TN RG ++VDYAHT ++L +L+ +R + RI Sbjct: 315 LGLSPADFV-HLENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRI 372 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441 + VFGCGG+RD+ KRP+MG AD+A++T DNPR EDP I ++ G+ G + Sbjct: 373 VTVFGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVA 432 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 + +R +AI A+EML D L+VAGKGHE V G++K+ D IREILG Sbjct: 433 EADRRKAIALALEMLRPGDALLVAGKGHEDYQQV--GDRKLPFSDQQTIREILG 484 >gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus atrophaeus 1942] Length = 490 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 172/472 (36%), Positives = 242/472 (51%), Gaps = 52/472 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 19 FHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV----- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142 + P+ +V N+++ LS+ + YG+ + + + +TGT+GK+S + V +I +++G Sbjct: 74 ----SVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGK 129 Query: 143 SSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + IG T I +F N TTP + L K ++ V +E SSH L R Sbjct: 130 RTGLIG-TMYIKIDEETFPVKN--TTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGR 186 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADD--- 250 + G FTNL +DH+DYH+T Y AK LF +L E P AI+ ADD Sbjct: 187 VHGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEAS 246 Query: 251 AYSKEV---------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AY ++V +K + + + QG L + NK I++ Sbjct: 247 AYYEKVTAAHISTYGIKNDADVMAKHIKTTAQGTSFEL-----VTNKGTKPITIS----- 296 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F VYN L A CIA GI V E +E+LH V GRFE V N I VD Sbjct: 297 ----LVGQFNVYNVLAAVATCIAAGIPFETVAEAVEELHGVRGRFELVNKNQEFPVI-VD 351 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT +SLE +LK + +T G++ VV GCGGDRD+ KRP M KIA+ LAD I T DNPR Sbjct: 352 YAHTPDSLENVLKTCKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPR 411 Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 SEDP I ++ G+ + NR +AI AI K DV+++AGKGHET Sbjct: 412 SEDPLAILRDMEAGVENEYYHSIANREQAIFFAIANARKGDVVLIAGKGHET 463 >gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM603] Length = 495 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 242/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I++G FVAI G+ DG FI +AIAQGA ++ + R Sbjct: 27 ISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHVHGQVEFREG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ TGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGATGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267 F+NL RDH+DYH T AY AK LF E + AII DDA + +K+ H G + Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGISL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L +L V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 FGCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQYADRVILTDDNPRSESPQAIVADMLAGLTHPELAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR +A A++ QD++++AGKGHE ++ N Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 >gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marivirga tractuosa DSM 4126] Length = 488 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 261/486 (53%), Gaps = 43/486 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR + AG +FVAI G + DGH +I +AI QGA AIV +D + I Sbjct: 24 IDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQGAVAIVC------EDIPSDIHPQ 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + DN+ K L + A+ +G HP ++AVTGT+GK++ S + Q+ G + Sbjct: 78 VTYVQTDNSAKALGVMAANYFG-HPSEKLKLIAVTGTNGKTTTVSLLHQLFMNLG---YH 133 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ + + + TTP + L L + G V +EASSH ++Q R+ G+ Sbjct: 134 TGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMVDSGCNIVFMEASSHAIEQERMAGL 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 KL FTN+ +H+DYH+T Y AK +LF++ LP ++ A++ DD KR Sbjct: 194 KLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDD-LPSDAFALVNVDD-------KR--- 242 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALV 317 G +L K+ + K+ AI+ + ++ S++G + D F G F YN L Sbjct: 243 -GMVMLQNCKASKYTYSLKMMAIYKAKVLSNSIQGLELNIDQKDVWFRQIGYFNAYNLLA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +S VL +L ++ + GRFE V N+ G VDYAHT ++LE +L+ I Sbjct: 302 AYATAHLLEEESEEVLMNLSQIELKNGRFEQVPNNA-GITAVVDYAHTPDALENVLQTID 360 Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +G +++ V GCGG+RD KRP+M +IA +D I+T DNPR E+PE I A++ G Sbjct: 361 NFRTGNEQVLTVVGCGGNRDTTKRPLMAEIACRFSDRVILTSDNPRFEEPEAIIADMQKG 420 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +P +R EAI+ A K D+++VAGKGHET + GE+ D +++R Sbjct: 421 VPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKGHETYQEI-KGERSHFDDKEVVR 479 Query: 491 EILGLI 496 E+L LI Sbjct: 480 EMLSLI 485 >gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella disiens FB035-09AN] Length = 486 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 178/501 (35%), Positives = 272/501 (54%), Gaps = 39/501 (7%) Query: 15 INQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +N+L ++ P+Q E+ I ++ DSR I+ +FVAI G + DGH +I +AI GA Sbjct: 3 LNELLKNVKPIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELGAC 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127 AI+V +D + N + V +T + + A+ YG H ++ VTGT+GK+ Sbjct: 63 AILV------EDIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +VA+ + + ++ G ++G ST+ ++ D + TTP PI L L+ + +G Sbjct: 117 TVATLLYNMFRKFG---HKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKMVEEGCE 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK F++ L K++ Sbjct: 174 YAFMECSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDD-LGKDAF 232 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDF 302 AI ADD + +M + A + S F HL + C + + + V GK+ Sbjct: 233 AITNADDK-NGMIMVQNCKATVKTYSTKRAADFKAHLLE-CHF---EGMYLEVNGKEVGV 287 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 F G+F V N L G + +G +L L L V GR E + T+ G +DY Sbjct: 288 QF--IGKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPI-TSLDGITAIIDY 344 Query: 363 AHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 AHT ++LE +L I + G+ II V G GG+RD+GKRP+M A+ +D I+T DN Sbjct: 345 AHTPDALENVLLAIHEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSDNVILTSDN 404 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 PR+EDP+ I +++ G+ +K NR EAIR A M +K DV+++AGKGHET Sbjct: 405 PRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKGHETYQE 464 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + NG K D +++REI GL Sbjct: 465 I-NGVKHHFDDHEVVREIFGL 484 >gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium azorense Az-Fu1] Length = 490 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 246/459 (53%), Gaps = 25/459 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 ++++S +Q + F AI GN DGH FI AI +GA + + S+ D T++ P Sbjct: 25 ITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGASTVFIQDT-SIID---TLKRKYPY 80 Query: 92 --ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I+ +NTRK L+ +++ Y + + ++ +TGT+GK+SV++ + Q + +G +++ Sbjct: 81 INIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGKTSVSNLLAQYYENAG---YKV 137 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI+ D L TTP P+ + L+ + +G V E SSH Q R+ Sbjct: 138 GVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVVVAEVSSHAAHQFRVYSTL 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261 G FTNL +DH+DYH T + YF AK F + L ++ A + DD Y K + Sbjct: 198 FHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAIASVNIDDPYGKRIY-NDF 256 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++ G++G+F +K + I +GK +F L G F VYN + Sbjct: 257 KEKIDFITYGFEGEF-KIKDYNLSLFETLFNIEYKGKTLNFKTKLRGLFNVYNLSASISF 315 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 I G D + + L + GRFE V ++ + +DYAHT ++LE ILK++ I Sbjct: 316 LIKDGFDIDFLKDKTLDLKPIRGRFEVV--EAKDFIVVIDYAHTPDALENILKSLNQIKQ 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438 R+I VFG GG+RD+ KRP+MGK+A D +DI I+T DNPR EDP +I +I+ GI Sbjct: 374 NRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFEDPNQIIKDILEGITQKSK 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I + +R +AI AI+ K D++++AGKGHE I+ + Sbjct: 434 VIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQIIKD 472 >gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio cellulolyticus CD2] Length = 484 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 180/495 (36%), Positives = 268/495 (54%), Gaps = 36/495 (7%) Query: 13 ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 ELI L I + ++N ++ DSR ++G +FV + G K DGH FIPQAI G A+ Sbjct: 5 ELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTRAL 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 +V + + IR VD+TR L+ A + +G HP N++ VTGT GK++ Sbjct: 65 LVQREVEVPEGITVIR-------VDDTRYALASVADKFHG-HPSGDFNLVGVTGTKGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 ++ I + G + IG TIS+ D L TTP L + + + V Sbjct: 117 TTYMIKSILEMYGQKTGLIG---TISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNS 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V +E SSH LD HR+ + G FTNL RDH+D+H+T + Y AK++LF+ Sbjct: 174 VVMEVSSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMC----KKG 229 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DF 302 +I D Y ++V++ NA C V + G ++ V + + V V F D Sbjct: 230 LINVDSEYGRKVVE---NAECEVYTFGIDSS-ADIRAVDIVKHPDSVEFKVITPWFTGDI 285 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PG+F VYNAL A G C +GI + + L+ + VPGR E V T + I +DY Sbjct: 286 AVNIPGKFSVYNALGAIGSCALMGIPLEYIQKGLKNV-TVPGRAEVVQTGT-DYTIIIDY 343 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH+ +SLE IL ++ R+I +FGCGGDRD+ KRPIMG+I+ LAD ++T DNPR+ Sbjct: 344 AHSPDSLENILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITSDNPRT 403 Query: 423 EDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 E+P I +I GI +I +R EAI+ A++ +D++V+AGKGHET +I+ N Sbjct: 404 EEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKGHET-YIMLND 462 Query: 479 EKKMSVDCDIIREIL 493 + + +++REIL Sbjct: 463 KTIHFDEREVVREIL 477 >gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae] Length = 495 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 246/454 (54%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ EDG FI +AIAQGA ++ + + R+ Sbjct: 27 ITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476 >gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium ulcerans ATCC 49185] Length = 483 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/477 (34%), Positives = 257/477 (53%), Gaps = 44/477 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E + + DSR I+ G IFVA+ G DGH +I QA+ GA+ ++VS Sbjct: 18 KEEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSK---------K 68 Query: 86 IRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + + P+ + + + RK L + AS Y P+ L + G +G + + I S L Sbjct: 69 VEAAFPVKYIWIKDLRKKLGVLASNFYN-WPQKKLKIIGITGTNGKTTTTYLI--ESILG 125 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S + T+ D + TTP + + K +G+ ++ +E SSH LD R+ Sbjct: 126 SNKTARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALDLGRV 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257 D ++ FTNL DH+D+H+T + YF AK +LF ++ K E +I DD Y K + Sbjct: 186 DMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFT-MMKKGCEKNCVINIDDLYGKRLS 244 Query: 258 KR-------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 HN G RV +G+ + + Q+V + ++ + G + Sbjct: 245 SEFGGISYGMHNEG-RV-----RGRIVEFHG-----DGQEVELHIDAFSTRTKLAILGRY 293 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 VYN L A + + +GI+ +VLE +++L PGR+E V + + VDY+HTS++LE Sbjct: 294 NVYNVLGAISIALLLGIEKEIVLERIKELKGAPGRYELVNC-GQNFTVIVDYSHTSDALE 352 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 ILK+I + G++I VFGCGGDRD KRP+MG+IA L+DIAIVT DNPR+EDP KI Sbjct: 353 NILKSINELKKGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVE 412 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ G+ G I + +R AI A+E+ ++D++++AGKGHET I+ G KK+ D Sbjct: 413 QVLEGMKGKNHIVEEDRDHAISKAVELAEEKDIILIAGKGHETYQIL--GRKKIHFD 467 >gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kordia algicida OT-1] Length = 487 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 170/509 (33%), Positives = 266/509 (52%), Gaps = 48/509 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + + ++ E+ DSR +Q +F+AI G + DGH +I + Sbjct: 4 LKDILYKVHIEAVTGDTTIAVR-------ELVFDSRKVQLNDVFIAIKGYEVDGHSYIEK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI GA A++ ++ I + + VDN L++ AS YG EN+ + V Sbjct: 57 AIKAGAIAVIC------EEIPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKLIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 TGT+GK+++A+ + Q+ +++G +++G ST+ D TTP + + L Sbjct: 111 TGTNGKTTIATLLYQLFKKAG---YKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQK 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ +GV + +E SSHG+ Q R G+ G FTNL DH+DYH T Y + K + F+E Sbjct: 168 MNHEGVEYCFMEVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPKE+ ++ DD +M+ K+ + K A + Q + + Sbjct: 228 -LPKEAFCLVNIDDKNGLVMMQNTK-----------AKKYTYALKTYADYRAQILENRLA 275 Query: 297 G-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 G D + L G F YN L +G++ +L + +L V GRFE+ + Sbjct: 276 GLLLKINDNEVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFEYFIS 335 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL 409 ++ I VDYAHT ++L+ +L+ I I +G ++I V GCGGDRD KRP MG IA L Sbjct: 336 KNKITTI-VDYAHTPDALKNVLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTL 394 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVV 464 + AI T DNPRSEDP I I G+ P +K +R +AI+TA +M N+ D++++ Sbjct: 395 STKAIFTSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILI 454 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKGHET + NG++ D I +EIL Sbjct: 455 AGKGHETYQEI-NGKRSDFDDYKIAKEIL 482 >gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella melaninogenica D18] Length = 485 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 173/500 (34%), Positives = 267/500 (53%), Gaps = 33/500 (6%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ + + Q + +I V+ DSR I+ G +F+A+ G + DGH FI +AI GA Sbjct: 3 LSELLKNVKVIASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 AI+ L+D + + V +T + A+ YG+ + + VTGT+GK+ Sbjct: 63 AIL------LEDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 ++A+ + ++ + G ++G ST+ ++ D + TTP PI L L+ + G Sbjct: 117 TIATLLYRMFREFG---HKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCE 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK ++F + LPK + Sbjct: 174 YAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKTAF 232 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 AI ADD + +M + A + S+ F K+ H + + + V+GK+ Sbjct: 233 AITNADDK-NGMIMVQNTKATVKTYSIKRMADF--RAKILECHF-EGMYLEVDGKEVGVQ 288 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F G+F V N L G I +G VL + L V GR E + + G VDYA Sbjct: 289 F--IGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYTAVVDYA 345 Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++LE +L I + G+ +I V G GG RD+GKRP+M + A+ +D I+T DNP Sbjct: 346 HTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNP 405 Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R E+P+ I +++ G+ K +R EAIRTA M K DV++VAGKGHE + Sbjct: 406 RDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGHENYQEI 465 Query: 476 TNGEKKMSVDCDIIREILGL 495 NG K D ++IREI G+ Sbjct: 466 -NGVKHHFDDHEVIREIFGI 484 >gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei VT8] gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter aquaeolei VT8] Length = 494 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 254/483 (52%), Gaps = 34/483 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++ G F+A+ G + ++ QAI+ GA AI++ S Q+ R Sbjct: 24 IHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESE---QERQCHERHG 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG----- 141 I+ V R L A R + +HP ++ VTGT+GK+SV ++ Q+ + +G Sbjct: 81 ALIVPVVGLRARLGRIADRFF-EHPSRHLRVIGVTGTNGKTSVTQYISQLLRETGTPCGL 139 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L + G +I S TTP + + + L+ + ++G +E SSH LDQ R+D Sbjct: 140 LGTLGYGMPGSIESATH----TTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDN 195 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259 + + FTNL RDH+DYH + +AY AK RLF EEL ++I DD + +++ + Sbjct: 196 LTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREEL----HFSVINFDDPFGRQLYGQ 251 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RV ++ + + LK+ + + + + +FD PL G F N L A Sbjct: 252 LEGQCDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G+ + + +L PGR E T S G + VDYAHT ++L L+ +R Sbjct: 312 LATVLTLGVPVERAVSVVRELSPPPGRLERF-TGSTGKHVVVDYAHTPDALANALEALRP 370 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 T GR+I VFGCGGDRD GKRP M K A AD IVTDDNPR+E PE+I ++I G Sbjct: 371 HTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDI---SAG 427 Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 F + G +R +AI A+ M N+ D++++AGKGHE + G+K D + +R + Sbjct: 428 FTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKGHEAYQEI-RGQKLPFSDAEQVRHL 486 Query: 493 LGL 495 L L Sbjct: 487 LNL 489 >gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile] Length = 484 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL D+I D + +L+I IN V DSR + G +F+ I G DGH + Sbjct: 1 MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 I AI +GA A +V I+ T I V D TRK ++ A Y HP N Sbjct: 53 IKDAIEKGASAFIVEE-------DVAIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+S+ + + +I L+ ++G TI F + + TTP I L Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK + Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220 Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 LF II DD K++ + + N C V + F+ +K + Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +T S E F P+PG F VYN L C +GI + E L + V GRFE Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N +G + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464 +D+ I+T DNPR+E+PE I +I+ GI E +R +AI AI M K DV+++ Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453 Query: 465 AGKGHETVHIV 475 GKGHET I+ Sbjct: 454 TGKGHETYQII 464 >gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 4_1_13] Length = 485 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 249/475 (52%), Gaps = 42/475 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------EVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S V+++ Sbjct: 71 KHNVSYVLIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDVNNSVINIDDEYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++S G G + + + I K+QV F L G+F +YN Sbjct: 243 EFIVDNPEIISYGIDGGDLEGEYLDDGYIDIKYKEQVE--------KIKFALLGDFNLYN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ Sbjct: 295 TLGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIV 353 Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I + R+I +FGCGGDRD+ KRPIM K+A DL+DI I+T DNPR+E PE+I ++ Sbjct: 354 AARNIKNVNRVITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVK 413 Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G + + +R +AI+ A+ M K D++++ GKGHET HI+ G KK D Sbjct: 414 KGFIKSDDYFFEPDREKAIKVAVNMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Prevotella melaninogenica ATCC 25845] Length = 485 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 173/500 (34%), Positives = 267/500 (53%), Gaps = 33/500 (6%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ + + Q + +I V+ DSR I+ G +F+A+ G + DGH FI +AI GA Sbjct: 3 LSELLKNVKVIASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 AI+ L+D + + V +T + A+ YG+ + + VTGT+GK+ Sbjct: 63 AIL------LEDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 ++A+ + ++ + G ++G ST+ ++ D + TTP PI L L+ + G Sbjct: 117 TIATLLYRMFREFG---HKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCE 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK ++F + LPK + Sbjct: 174 YAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKTAF 232 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 AI ADD + +M + A + S+ F K+ H + + + V+GK+ Sbjct: 233 AITNADDK-NGMIMVQNTKATVKTYSIKRMADF--RAKILECHF-EGMYLEVDGKEVGVQ 288 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F G+F V N L G I +G VL + L V GR E + + G VDYA Sbjct: 289 F--IGKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYTAVVDYA 345 Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++LE +L I + G+ +I V G GG RD+GKRP+M + A+ +D I+T DNP Sbjct: 346 HTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNP 405 Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R E+P+ I +++ G+ K +R EAIRTA M K DV++VAGKGHE + Sbjct: 406 RDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGHENYQEI 465 Query: 476 TNGEKKMSVDCDIIREILGL 495 NG K D ++IREI G+ Sbjct: 466 -NGVKHHFDDHEVIREIFGI 484 >gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus VM573] Length = 495 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 241/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I++G FVAI G+ DG FI +AIAQGA ++ + R Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAHHAHGQVEFREG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267 F+NL RDH+DYH T AY AK LF E + AII DDA + +K+ H G + Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWVKQLPHAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 LVQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L +L V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 FGCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLAGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR A A++ QD++++AGKGHE ++ N Sbjct: 443 NRFHAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 >gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella buccalis ATCC 35310] Length = 482 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 172/477 (36%), Positives = 256/477 (53%), Gaps = 32/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR ++ G +FVAI G + DGH +IP+AI GA AI+ A + N Sbjct: 23 ITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELGAAAILCEEA------PQQPQPN 76 Query: 90 TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 VV +T + A+R +G KH + ++ VTGT+GK++VA+ + + ++ G + Sbjct: 77 VTYAVVKSTEDEVGKVATRFFGDPSKHLK-LVGVTGTNGKTTVATLLYNLFRKLG---HK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ +F + + TTP PI L + L+ + + G +V +E SSH + Q R+ G+ Sbjct: 133 CGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVFMECSSHAIAQKRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL RDH+DYH+T + Y NAK F+ LPK + AI ADD K M N Sbjct: 193 TFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDG-LPKSAFAITNADD---KNGMVMVQN 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V + Q ++ H Q + ++++G++ F G+F V N L G Sbjct: 249 TKASVKTYSIQSMADFKARIIECHF-QGMYLAIDGQEVGVQF--TGKFNVSNLLAVYGAA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381 +G L + LH V GR + + + G VDYAHT ++L+ +L I + Sbjct: 306 RMLGKQREETLIAMSTLHTVNGRMDTL-QSPEGFTAIVDYAHTPDALKNVLLAIHEVDGK 364 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 G II V G GG+RD+GKRP+M K A+ L+D I+T DNPR EDP+ I +++ G+ + Sbjct: 365 GHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEDPQDIINDMLAGLDAQDQ 424 Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R EAIRTA + KQDV++VAGKGHET + G K D +++R+I Sbjct: 425 KKVLTIADRKEAIRTACMLAQKQDVILVAGKGHETYQEI-KGVKHHFDDKEVLRDIF 480 >gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TMA 21] Length = 499 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA A++ + R Sbjct: 31 ITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQVEYREA 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 91 VPVMYLSELDQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 447 HRFQAASYALKHAGAQDIILLAGKGHEDYQVLAN 480 >gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Puerto Rico] gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase (murE) [Anaplasma marginale str. Florida] Length = 472 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 244/448 (54%), Gaps = 24/448 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G+IFV + E F+P A+ GA+ IV +A L ++ I Sbjct: 17 ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68 Query: 93 LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++ AS Y G PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 69 IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128 Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I ++ TTP + L K LS L V ++ +EASSHG+ Q RL G+K + Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTAA 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL DH+DYH + + Y+ K +LF E+L +E A++ AD +E+ + A AG ++ Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELA--AGRNII 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + L ++ +T+ + G+ +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAASGS 306 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386 V +++L GR E +G RI +DYAHTS++L+ L +++ + ++ Sbjct: 307 GHRDV--PIDRLASPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419 Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473 +AI A+ + + VL++AGKGHET Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447 >gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii DSM 18315] Length = 490 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 167/507 (32%), Positives = 270/507 (53%), Gaps = 43/507 (8%) Query: 10 DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + ELI+ L + + + +I+ + SDSR ++ G++FVA+ G DGH +I AI +GA Sbjct: 2 ELKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENIL--AVTGTSG 125 AIV L D + + + P+ + V ++ L S Y +N++ VTGT+G Sbjct: 62 AAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L ++ + G Sbjct: 122 KTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAG 178 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + F++ LP Sbjct: 179 CEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPAS 237 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLS------VGYQGKFI--HLKKVCAIHNKQQVTI 293 + A+ ADD K + N + L+ ++GK + H + + N ++V Sbjct: 238 AFALTNADD---KSGLVMLQNTAAKKLTYSLRTLADFKGKILESHFEGTEMLVNGREV-- 292 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + G F YN L G +++G D VL L LH V GRF+ + + Sbjct: 293 ---------MTRFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTI-QSP 342 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G VDYAHT ++L +L I + +GR+I V GCGG+RD+GKRPIM K A L+D Sbjct: 343 LGYTAIVDYAHTPDALTNVLSGIHEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQDVLVVAG 466 I+T DNPR E+P++I +++ G+ +E+ +R +AI+TA + K DV++VAG Sbjct: 403 QLILTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAG 462 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE V G K D + ++EI Sbjct: 463 KGHEDYQEV-KGVKHHFDDREQLKEIF 488 >gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis ATCC 33386] Length = 481 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/472 (33%), Positives = 255/472 (54%), Gaps = 38/472 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR I+ +F A++G DGH +I +A+ GA+ ++ +D + + Sbjct: 21 IGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMVIAEK----KDITVADKDV 76 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T I V DN RK L + AS +G + I+ +TGT+GK++ + + + + + +I Sbjct: 77 TYIFV-DNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYILDSMLENTS----RI 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI D + TTP + L K L +GV + +E SSH L+ R+D ++ Sbjct: 132 G---TIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEVSSHALEIGRVDMLE 188 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261 + FTNL +DH+DYH+ + YFNAK +LF L K++ A+ DD+Y + + +++ Sbjct: 189 FDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAV-NIDDSYGERIYNSNKSY 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + +GK + HN + ++ +G ++ F L G++ +YN L G Sbjct: 248 KSYSIIKDSDLKGK------IEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLYNLLGCIG 301 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + +G D ++E ++++ VPGRFE V + R+ VDYAHT N LE IL+ +R IT Sbjct: 302 VLLNLGFDIRDIIERVKRVGYVPGRFELV-NEGQDFRVIVDYAHTDNGLENILETVRKIT 360 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 R+I +FG GGDRD KRP M + A +D I+T DNPR+EDP +I ++ G+ Sbjct: 361 EKRVITIFGAGGDRDNTKRPKMARAAAKYSDFVIITSDNPRTEDPAEITRQVEKGLTDID 420 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R +AIR IEM + D L++AGKGHE I+ G +K+ D Sbjct: 421 FPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKGHEDYQIL--GREKIHFD 470 >gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 2_1_31] Length = 485 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 162/470 (34%), Positives = 247/470 (52%), Gaps = 34/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 19 RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139 +++D R L AS Y + P+ I+ VTGT+GK+S ++++ R Sbjct: 72 HKVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G ++IG F N TTP + L K + + +V +E SSH L+ R+ Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + FTNL +DH+DYH T + YF AK +LF +L + ++ DD Y K + Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDINNSVFNIDDKYGKRLYDE 243 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++S G G + + + + + I +GK F L G+F +YN L A Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKGKVEKVKFALLGDFNLYNTLGAV 299 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + I +GI +L+ + + PGRFE + + ++ VDYAHT ++L ++ R I Sbjct: 300 AIAIKMGISWEDILKRVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358 Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I A++ G Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIGFTK 418 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 419 NDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-63q42] gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile ATCC 43255] Length = 484 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL D+I D + +L+I IN V DSR + G +F+ I G DGH + Sbjct: 1 MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 I AI +GA A +V I+ T I V D TRK ++ A Y HP N Sbjct: 53 IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+S+ + + +I L+ ++G TI F + + TTP I L Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK + Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220 Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 LF II DD K++ + + N C V + F+ +K + Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +T S E F P+PG F VYN L C +GI + E L + V GRFE Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N +G + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464 +D+ I+T DNPR+E+PE I +I+ GI E +R +AI AI M K DV+++ Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453 Query: 465 AGKGHETVHIV 475 GKGHET I+ Sbjct: 454 TGKGHETYQII 464 >gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans Hxd3] Length = 529 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 169/504 (33%), Positives = 254/504 (50%), Gaps = 43/504 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ PE + + + +I + S ++ G +FVAI G+ DGH FI Sbjct: 1 MRLSELLLPVCPESVRSTAAARGVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 QA+A+GA A+V +D + T+R V + R L+L ++ YG ++ Sbjct: 61 DQALARGAVAVVAEKEVDARD-AVTVR-------VADARNALALLSAVFYGAPSARLVLV 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSY 176 VTGT+GK++ A+ V+ I ++G IG T + N LTTP L L Sbjct: 113 GVTGTNGKTTTAALVEHILVKAGKQVGVIG-TGNFRYVGRRFKNPLTTPESADLQHILRD 171 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +++ GVTHV +E SSH L Q R+ G FTNL +DH+D+H + Y+ K RLF Sbjct: 172 MATAGVTHVVMEVSSHALAQQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTG 231 Query: 237 -----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290 + K ++I +DA + + G + G+ + I+ K V + + Sbjct: 232 TRSVGVREKHMVSVINCNDARGRGLFDTLPVPG--RMGAGFAEACDIYPKGVTSSPDGLA 289 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 TI F PL G + + N L AAG + +G++ A + E +E VPGR E V Sbjct: 290 GTIVTPAGPIPFCSPLAGTYNLENILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVA 349 Query: 351 TNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 R GR ++VDYAHT ++L+ +L +R I++GR+ VFGCGGDRD+ KRP MG IA + Sbjct: 350 --DRMGRFVFVDYAHTPDALQNVLSALRKISAGRLFCVFGCGGDRDRAKRPKMGGIAATI 407 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIE-------- 454 AD +VT DNPRSEDPE I A+I+ G+ G E+ + + R +E Sbjct: 408 ADRVVVTSDNPRSEDPEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIR 467 Query: 455 ----MLNKQDVLVVAGKGHETVHI 474 D +++AGKG E I Sbjct: 468 AAVSAAAPGDTILIAGKGEENYQI 491 >gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter carbinolicus DSM 2380] Length = 507 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 254/486 (52%), Gaps = 63/486 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G +F A+ G DGH FI A+A+GA A+V+ S ++L T ILV Sbjct: 29 DSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVVMESPHTLP------TGVTGILVK 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 D R+ ++L A+ +G +++L V TGT+GK++V+ V+ I +G +G Sbjct: 83 DG-RRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVESILLAAGYRPAVLGTVDYR 141 Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 A + TTP + L + ++ +G + +E SSH L+Q R+DG+ G FTNL Sbjct: 142 FEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRRVDGVWFDVGVFTNL 201 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE-------VMKRAHNAG 264 +H+DYH + YF AK+RLF L + ++ +DD++ V++ H + Sbjct: 202 TPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDSWGARLGAMLPAVIRCGHASE 261 Query: 265 CRVLS-------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 C V + G G + A+ + PL G++ + N L Sbjct: 262 CDVTADDVTISVAGIAGSLRTARGTAALQS-----------------PLVGDYNLQNLLC 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AAG+ A+ + A + + L + VPGR E + N RG + VDYAHT ++LE +L +R Sbjct: 305 AAGVGAALDMVPATIAKALAQAPQVPGRLESI-ANERGALVLVDYAHTGDALENVLVTLR 363 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI----- 432 + R++ VFGCGGDRD GKRP+MG+IA LAD+AI+T DNPRSEDP I ++ Sbjct: 364 QLQPRRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLR 423 Query: 433 -IHGIP------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 IH P G++ +R EAI A+ +L DVL+VAGKGHE I+ G Sbjct: 424 RIHEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQPDDVLLVAGKGHEDYQII--GR 481 Query: 480 KKMSVD 485 +++ D Sbjct: 482 QRLHFD 487 >gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-23m63] gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP08] gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile NAP07] Length = 484 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 247/491 (50%), Gaps = 43/491 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL D+I D + +L+I IN V DSR + G +F+ I G DGH + Sbjct: 1 MKLNDIIQGLDIINVKGELNI--------DINNVQYDSRKVTKGTLFICIKGFVSDGHKY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 I AI +GA A +V I+ T I V D TRK ++ A Y HP N Sbjct: 53 IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+S+ + + +I L+ ++G TI F + + TTP I L Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK + Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220 Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 LF II DD K++ + + N C V F+ +K + Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTNADFMARDIKSDSDGVSY 277 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +T S E F P+PG F VYN L C +GI + E L + V GRFE Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N +G + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464 +D+ I+T DNPR+E+PE I +I+ GI E +R +AI AI M K DV+++ Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVII 453 Query: 465 AGKGHETVHIV 475 GKGHET I+ Sbjct: 454 TGKGHETYQII 464 >gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 499 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 251/488 (51%), Gaps = 28/488 (5%) Query: 10 DFPELINQLSIF---PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +F +LIN L++ P+ + + ++ DSR Q G++FVAI G DGH F+P A+ + Sbjct: 2 NFRDLINHLNVLEHSPVL--DVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTR 59 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A+++ + + A VV +TRK L+L ASR YG+ P L + G +G Sbjct: 60 GAAAVLLQQKVPVPEGVAWA-------VVPDTRKGLALAASRFYGE-PGRALRLVGVTGT 111 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGV 182 + + I +G TI + D R TTP + L + L ++ GV Sbjct: 112 NGKTTTTHLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGV 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 T V +E SSH L R+ G+ A FTNL +DH+D+H + YF AK +LF L +E+ Sbjct: 172 TDVVLEVSSHALRLSRVHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGL-GEEA 230 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AII DD Y ++ GCR+ +Q + V + + + E Sbjct: 231 AAIINRDDPYGVRLLDLTR--GCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPV 288 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F VYNAL AA + + G + L ++ VPGRFE V + + +DY Sbjct: 289 ALRLSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFERV-DQGQEYTVIIDY 347 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + LE +L+ R I GR+I VFGCGGDRD+ KRP+MG I+ AD +++T DNPR+ Sbjct: 348 AHTPDGLENLLRAAREIAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRT 407 Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EDP I +I G G+ +R EAIR A E DV+++AGKGHE I+ Sbjct: 408 EDPLAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKGHEDYQII-- 465 Query: 478 GEKKMSVD 485 G K++ D Sbjct: 466 GTKRLKFD 473 >gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio mimicus MB-451] Length = 495 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R Sbjct: 27 ISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIAQGANIVLAEADAQHVNGLVENREG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLNFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRV 267 F+NL RDH+DYH T AY AK LF E + AII DDA + K+ H G + Sbjct: 207 FSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQR--AIINVDDAVGAQWGKQLPHAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L+ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 LAQPNTAQAIWARQVQYAESGITLDFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L +L V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPQLRPVLGRMELFQREHKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 FGCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 FGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMLVGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR +A A++ QD++++AGKGHE ++ N Sbjct: 443 NRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476 >gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella multiformis DSM 16608] Length = 520 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 171/481 (35%), Positives = 257/481 (53%), Gaps = 32/481 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+ G +FVA+ G + DGH FI +A+AQGA A++ L+D A + Sbjct: 58 EIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQGAVAVL------LEDMPAVMDE 111 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V +T + A+ YG ++ VTGT+GK++VA+ + + ++ G ++ Sbjct: 112 KVTYVQVASTEEDAGKVATVFYGNPSRRLKLVGVTGTNGKTTVATLLYNMFRKFG---YK 168 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ D + TTP PI L LS + G + +E SSH + Q R+ G+ Sbjct: 169 TGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRMVDAGCEYAFMECSSHAIHQRRISGL 228 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+ ADD + M + Sbjct: 229 EFAGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGLFMVQNTK 286 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F K+ H + + + +EGK+ F G+F V N L G Sbjct: 287 AAVKTYSIKRMADF--RAKILECHF-EGMYLEIEGKEVGVQF--IGKFNVSNLLAVYGAA 341 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379 I +G +L + L V GR E + + G VDYAHT ++L +L I + Sbjct: 342 ILLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDT 400 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G +I V G GG RD+GKRP+M + A+ +D I+T DNPR EDP+ I +++ G+ Sbjct: 401 KGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVILTSDNPRDEDPQAIIDDMLSGLDAA 460 Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 K +R EAIRTA M K DV++VAGKGHE + NG K D ++IREI G Sbjct: 461 QRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIFG 519 Query: 495 L 495 + Sbjct: 520 I 520 >gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 482 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 256/480 (53%), Gaps = 25/480 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+K + DSR ++ G +FVA+ G+ DG LFIP A+++GA IV + Sbjct: 14 EKKHMLICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCR-----HNEVEYC 68 Query: 87 RSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 S PI VVD+ R L A Y G I+ VTGT+GK+++ ++ + + G + Sbjct: 69 GSAIPI-VVDDPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRT 127 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + F+++ LTTP + L L+ + V +E SSH LDQ R+ GI Sbjct: 128 GVIGTIAYRWPGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGIS 187 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH+ + YF+AK RLF E K + D+ + +++ K Sbjct: 188 FKGVIFTNLTQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPE- 246 Query: 264 GCRVLSVGYQGK------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G++ K ++ K + + + +S + K ++ PL G N L Sbjct: 247 ---IIGFGFKNKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLA 303 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + +G+ + EK VPGR E + N + I+VDYAHT ++L +L +R Sbjct: 304 VQAISLQLGL-APEDFCCFEKFTGVPGRLERI-VNKKQLDIFVDYAHTPDALINVLSALR 361 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + RII VFGCGG+RD+ KRP+MGK L+D+A++T DNPR+EDPE I A+++ G+ Sbjct: 362 DVGFKRIITVFGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLK 421 Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 I + +R +AIR AIE+++ D L+VAGKGHE + + S D +IR+ILG Sbjct: 422 KAKQIITEPDREKAIRQAIELVSPGDALLVAGKGHECTQQIGFMKYPFS-DQSVIRKILG 480 >gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp. 'sapolanicus'] Length = 487 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 257/468 (54%), Gaps = 29/468 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+++ DSR I+ +F+AI G DGH +I +A+ +GA A++V L+ + + I Sbjct: 23 ISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKGATAVIVEK--KLKKYLSGI--- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V+NTRK +++ A + +I + +TGT+GK++ A + I +++ + Sbjct: 78 -TYIEVENTRKEMAVLAKNFFANPLADIDLIGITGTNGKTTTAYLIYNILRKNSFKTAMF 136 Query: 148 GPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + + TTP + L + S + GV ++ +E SSH LD +R+ + Sbjct: 137 GTIKNIIAGEEISATRTTPESLDLYRYFSQAKTAGVQYIVMEVSSHALDLYRVHQMDFSL 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAG 264 FTNL +H+DYH+ +Y AK +LF +L P ++ A+I DD S ++++ AHN Sbjct: 197 AVFTNLSPEHLDYHKDLASYRQAKSKLFSQLSP-DASAVINLDDKNSGFMLEKSKAHNFK 255 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGL 321 S+ Q ++ C + +Q +++ + + +F L G F +YN+L A Sbjct: 256 ---YSLSNQNADLY----CQNYKLKQNSLNYQSQGLIKRNFQLKLGGIFNIYNSLAAVLS 308 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +GI + ++ LE++ VPGRFE + + ++ VDYAHT + +E +L+ + IT Sbjct: 309 VFLLGISADKIVNSLEEIKGVPGRFELINA-GQDFQLIVDYAHTPDGMENVLEAAKEITK 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 R+IV+FGCGGDRD+ KRP+M K+A D AD +T+DNPRSEDPE I +EI G Sbjct: 368 NRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLTNDNPRSEDPEFILSEIKSGFSNSFS 427 Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R +AI AI K D++++ G+GHE ++ +KK+ +D Sbjct: 428 NYEVISDRKKAIVEAINFAKKDDIILILGRGHEKYQVIK--DKKIELD 473 >gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanospirillum sp. MED92] Length = 488 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 170/486 (34%), Positives = 254/486 (52%), Gaps = 27/486 (5%) Query: 24 QWRERK-----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 +W E ++ +S DSR + G +FVA G K G FI A+A GA A+++ S+ Sbjct: 14 EWAEPTHSGIAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADGAVAVLIDSS-- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ 135 + S + P++ + + + A+R Y + P ++ +TGT+GK+S A FV Q Sbjct: 72 --ELSDCPNVDVPVIGISDLVSEIGPVAARFY-EQPSRAMTVVGITGTNGKTSCAHFVAQ 128 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G+ + +G + TTP I L K + L + G V +E SSH L Sbjct: 129 AMNNIGVKTAIVGTVGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVVMEVSSHAL 188 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ + G FTNL RDH+DYH + +AY AK RLF+E K A+I DD++ + Sbjct: 189 EQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLK--AALINGDDSFGR 246 Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ R + R +SVG G++ A+H + + +F F + GEF + Sbjct: 247 KLL-RDESIEARKVSVGRLFGQYHFAAYRLALHGIE-AELKTPAGNFAFASKIIGEFNLD 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+ A L G A V+E L +L VPGR + V + + +DYAHT ++LE L Sbjct: 305 NLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAVVAADKP-LVIIDYAHTPDALEKAL 363 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R T+G + VFGCGGDRD GKR +MG+IA LAD +VT DNPR+E PE+I I Sbjct: 364 SAVRAHTTGTLWCVFGCGGDRDAGKRELMGRIADQLADHLVVTSDNPRTESPERIIEMIE 423 Query: 434 HGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 GI P + +R AIR AI + +DV+++AGKGHE V S D ++ Sbjct: 424 QGICQHEPAI--EADRAAAIRLAIMQASPEDVVLIAGKGHEDYQEVGTKRYPFS-DLEVS 480 Query: 490 REILGL 495 +LG+ Sbjct: 481 MRLLGV 486 >gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 251/483 (51%), Gaps = 20/483 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG+ DG +IPQAIAQG A++ + +D + Sbjct: 19 ERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIAEADGEAEDGTIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P++ + + LS A R Y + ++ + VTGT+GK+++ + Q Q G +S Sbjct: 79 SHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTITQLLAQWGQLLGETS 138 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + + TT S + + L L SQG T ++E SSHGL Q R+ + Sbjct: 139 AVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAMEVSSHGLVQDRVAALP 198 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A +FTNL RDH+DYH + Y AK LF E II ADD + + ++ +A Sbjct: 199 FAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEK--IINADDEVGQRWLAKSPDA 256 Query: 264 GC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + L + G+++ +V + ++ L G F V N LVAA Sbjct: 257 VAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLESRLMGAFNVSNLLVAA 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G ++ + +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 317 ATMLALGYPLDVLCKTSSQLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALEAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G++ VFGCGGDRD+GKRP+MG IA AD +VTDDNPRSE+P I A+I++G+ Sbjct: 376 CKGQLWCVFGCGGDRDKGKRPLMGGIAEQYADRVVVTDDNPRSEEPRAIMADILNGM--- 432 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ G+ R EA+ AI DV++VAGKGHE +V N S + R +L Sbjct: 433 LDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LL 491 Query: 494 GLI 496 G+I Sbjct: 492 GVI 494 >gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 485 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KHNVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----KVFEAVN--TTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDINNSVINVDDEYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++S G + + + + + + + F L G+F +YN L A Sbjct: 243 EFIVDNPEIISYGIENGDLE----GDYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ R Sbjct: 299 IGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357 Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I ++ G Sbjct: 358 IKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFI 417 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 418 KSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 488 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 257/475 (54%), Gaps = 36/475 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR+ + G +FVAI G K DG +I A+ +GA AIVV S I + + Sbjct: 26 ICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERGAVAIVVEREVS-------IDKDITV 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V+N RK L+ AS YG + + + VTGT+GK+SV ++ I + + ++G Sbjct: 79 IKVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSVTYMIKSILESQ---NNKVGLI 135 Query: 151 STISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 TI + D TTP + L + L + +GV +V +E SSH L +R+D K Sbjct: 136 GTIHNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVMEVSSHSLALNRVDECKFDI 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H+T Y NAK +LF ++ +I DD YS ++ N+ + Sbjct: 196 AVFTNLTQDHLDFHKTMDEYANAKAKLFR---MAKTACVINIDDDYSSYMI---ENSNAK 249 Query: 267 VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V++ G + +I K + + T+ +E + +PG F VYN+L A + + Sbjct: 250 VVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIPGLFSVYNSLAAISVAFIL 309 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI V L+ + + GRFE + + + +DYAHT + LE ++K +G+ I Sbjct: 310 GIPLQSVKMALKDVKI-KGRFEVLDLDVPYN-VVIDYAHTPDGLENLMKAFGEYNTGKKI 367 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------F 439 ++FGCGGDRD+GKRP MG++A AD I+T DNPRSE+P KI EI GI Sbjct: 368 LLFGCGGDRDKGKRPKMGEVAGKYADFVIITSDNPRSEEPIKIIQEIEEGIKNTKCPYTI 427 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 IE +R EAI+ A+ + DV+++AGKGHET ++ +K + D DI+R+IL Sbjct: 428 IE--DRKEAIKYALSIAKDNDVVILAGKGHETYQVLK--DKVIDFDERDIVRDIL 478 >gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM 14484] Length = 457 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 168/475 (35%), Positives = 255/475 (53%), Gaps = 31/475 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ +S+ + G+IFVAI G DGH F+ +A+ +GA + V ++D Sbjct: 2 EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIED------- 54 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ V +TRK L YG+ E ++ VTGT+GK++ ++ + + +G+ + Sbjct: 55 -PRIVKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGI---K 110 Query: 147 IGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +G TI D TTP P+ L + G V E SSH L Q R+ G Sbjct: 111 VGLIGTIYYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWG 170 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 K FTNL +DH+DYH + YF+AK+ LF + P+E ++I ADD Y K ++ Sbjct: 171 TKFFTTIFTNLSQDHLDYHGDMENYFSAKLLLFTQY-PQEF-SVINADDPYGKRIVS--- 225 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R + G +G + + ++ + EGK + F L GEFQ YN A Sbjct: 226 VVGKRARTYGKEGD-LRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILT 284 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 GID +V E ++ + V PGRFE + G + VDYAHT ++LE +L+ R IT Sbjct: 285 AFLRGIDPQVVEEGVKDVRV-PGRFETYRKD--GKTVIVDYAHTPDALEKLLRTARGITR 341 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---G 438 GR++VVFG GG+RD+ KRP+MG++A + AD+ ++T DNPR EDP I +I+ GI Sbjct: 342 GRLLVVFGAGGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGISQKNK 401 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + + +R +AIR A+EM + DV+V+AGKGHE + S D ++REIL Sbjct: 402 VLVEPDREKAIRLAVEMAKEGDVVVIAGKGHEDYQEIKGVRYPFS-DSAVVREIL 455 >gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Leptotrichia hofstadii F0254] Length = 509 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 164/493 (33%), Positives = 261/493 (52%), Gaps = 40/493 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I+ ++FVA+ G+ DGH FI +AI GA+ I+ + + S+ Sbjct: 21 IKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDTGQYQSA--SD 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V+ RK L + AS YG +P++ I+ +TGT+GK++ + F++ I +++ + Sbjct: 79 VTFIQVEGIRKKLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSFFLENILEKTA----R 133 Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T F N TTP + L K + G + +E SSH L+ R+D +K Sbjct: 134 IGTTGNRILDKEFETVN--TTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVDMLK 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYADDAYSKEVMKRA 260 + FTNL +DH+D+H+T + YFNAK ++F L ++ +I DD Y ++ Sbjct: 192 FDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIYLEN 251 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKD-------FDFLFPLP 307 + +SV + I + +N +V I+++ GK+ + F L Sbjct: 252 NAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTENVYRFEIDLV 311 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE+ +YN L +++GI+ +++ LE + VPGRFE + N RI VD+AHT + Sbjct: 312 GEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETI-KNDLDVRIVVDFAHTDD 370 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L + K ++ IT R+I +FG GGDRD KRP M + A+ +D I+T DNPR+E+P K Sbjct: 371 GLLNVGKTLKQITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTENPTK 430 Query: 428 IRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I A+I G+ G ++ +R AI+ ML K D L++AGKGHET I+ EK Sbjct: 431 ILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGKGHETYQIIGT-EK 489 Query: 481 KMSVDCDIIREIL 493 D +I++E L Sbjct: 490 IHFDDREIVKEAL 502 >gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 498 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 162/466 (34%), Positives = 244/466 (52%), Gaps = 29/466 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G +FVA+ G+ DGH F QA+ +GA A++V ++ A + ++ P Sbjct: 26 ITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMV------EEPVAEVPASIPQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV +TR + +L A RL+G ++ VTGT+GK++V V+ + +G + IG Sbjct: 80 VVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTV 139 Query: 151 STI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S+ N TTP + + + L G TH +E SSH L + R G+ Sbjct: 140 GAKLGQASWPLPN--TTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAGVSFACA 197 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESP-AIIYADDAYSKEVMKRA 260 +FTNL +DH+D+H T + Y AK LF L P S A+I DD +S VM A Sbjct: 198 AFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSS-VMAEA 256 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + G + + V + + + F+ PL G F VYN L A Sbjct: 257 SAAPILTYGIERAGD-VRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYNTLAAVA 315 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + G+ + E + VPGR E + + ++VDYAHT + LE +L ++R Sbjct: 316 IALVEGLTPTEIQEGIRSYPSVPGRMERI-DEGQPFSVFVDYAHTPDGLENVLASVREFA 374 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439 R++VV GCGGDRD+ KRP M ++A+ LAD AI T DNPRSEDP I A++ G+ P + Sbjct: 375 PARVLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAILADMRGGVEPAY 434 Query: 440 I----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E+ +R AI AI DV+V+AGKGHE I+ EK+ Sbjct: 435 AHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKGHEDYQII-GAEKR 479 >gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 494 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 253/469 (53%), Gaps = 17/469 (3%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + I W + + + DSR ++ G F+AI+G+ DG ++I +AI GA A V++ A Sbjct: 15 VDISSYSWSKIGVKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANA-VIAQAC 73 Query: 78 SLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L T +R N PI+ VD+ LS A R++ ++AVTGT+GK+++ + Q Sbjct: 74 PLNTHGKTEVRDNVPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQW 133 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + +G T + F D + TT + I + + L L QG + ++E SSHG Sbjct: 134 FELVSCHAAVLGTTG--NGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHG 191 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L Q R+ ++ G F+NL RDH+DYH T + Y AK LF + K+ AII DD Sbjct: 192 LSQGRVKALEFEVGIFSNLSRDHLDYHGTMENYEQAKFSLFNQHCCKQ--AIINIDDPVG 249 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311 K + +A +S+ Q + C ++ ++++ +G D + L G F Sbjct: 250 KRWLGYLDSA--VAVSLHPQDFPRSVWAKCVNYSVNGISLAFDGMFGDGEIEVALIGGFN 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L+A + +G+D ++ L V GR E T S+ ++ VDYAHT ++LE Sbjct: 308 ANNVLIAMTTLLCMGVDKKQLIATAPLLRPVIGRMELF-TASKQAKVIVDYAHTPDALEK 366 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L ++ + G + V+FGCGGDRD GKRP+MG+I+ +LAD I+TDDNPRSEDP I + Sbjct: 367 ALHALKDHSGGALWVIFGCGGDRDVGKRPMMGRISEELADRVIITDDNPRSEDPTLIVKD 426 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I G+ + + +R A++ AIE +D++++AGKGHE ++++ Sbjct: 427 IQAGMSRPESVMVEHDRRAALKYAIEHSRPEDIILMAGKGHEDYQVLSD 475 >gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 484 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 254/476 (53%), Gaps = 36/476 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-TPILV 94 DSR ++ G +FVA+ G+ DG FI A+ +GA +V + S +++ ++V Sbjct: 24 DSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVC------RPCSVPVQTGGAAVVV 77 Query: 95 VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ RK L L A+ Y ++ +TGT+GK++ + + + +G + +G T Sbjct: 78 AEDPRKALGLLAAARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTGLLG-TVN 136 Query: 153 ISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 D +TTP + L LS + GV +E SSH LDQ R+ G + A T Sbjct: 137 FRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSGARFAAALLT 196 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH +AYF+AK RLF EL ++ + ADD Y + ++ + V Sbjct: 197 NLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQLGRG------V 250 Query: 271 GY--QGKFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAAG 320 GY QG + +V + +++ EGK ++ PL G F N + AAG Sbjct: 251 GYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAGVQAAG 310 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L + + +++ ++ L VPGR E + N +G ++VDYAHT ++LE +L+ +R Sbjct: 311 LAMGLPVEA---MQGLASFSGVPGRMERI-ENDKGLNVFVDYAHTPDALENVLRALRAAG 366 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 R+I VFGCGGDRD+ KRP+MG+ AD+A++T DNPR+EDP I A++ G+ Sbjct: 367 FARVIAVFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMADVKPGLAQCD 426 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E+ +R +A+ A+EM D ++VAGKGHE ++ + S D + +RE+L Sbjct: 427 HVVEEPDRRKALAAAVEMARPGDAVLVAGKGHEDYQVIGTTKIHFS-DQETLRELL 481 >gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus CMCP6] Length = 493 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L +L+ + D PEL + + + DSR ++ G FVAIVG+ DG Sbjct: 5 MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117 +I +AI QGA A++ S + N I+ ++ + LS A RLY +HPE ++ Sbjct: 54 YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + Q + +G + +G T + Q TT + + + K L+ Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +AY AKM LF E Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII DD + + G V L + + +TI Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286 Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +FD F PL GEF N L+A +A+G+D +L+ L V GR E Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 NS+ ++ VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA L Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD ++TDDNPRSEDP I +++ G+ + + +R A++ A++ D++++AG Sbjct: 404 ADHVVLTDDNPRSEDPTMIVQDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAG 463 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE ++ + S D + +++LG+ Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491 >gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio vulnificus MO6-24/O] Length = 493 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L +L+ + D PEL + + + DSR ++ G FVAIVG+ DG Sbjct: 5 MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117 +I +AI QGA A++ S + N I+ ++ + LS A RLY +HPE ++ Sbjct: 54 YIEKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + Q + +G + +G T + Q TT + + + K L+ Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +AY AKM LF E Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII DD + + G V L + + +TI Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286 Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +FD F PL GEF N L+A +A+G+D +L+ L V GR E Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 NS+ ++ VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA L Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD ++TDDNPRSEDP I +++ G+ + + +R A++ A++ D++++AG Sbjct: 404 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 463 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE ++ + S D + +++LG+ Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491 >gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sp. RC341] Length = 495 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 242/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AI QGA ++ + + + R Sbjct: 27 ITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKAIVQGANLVLAQADAEHPNGVSEYRQQ 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T S + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLSALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPGTAQAIWARQVEYAESGITLNFDSSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKNALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLNHPELAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR +A A++ QD++++AGKGHE ++ N Sbjct: 443 NRFQAASYALQQAGAQDIILLAGKGHEDYQVLAN 476 >gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer DSM 15868] gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Riemerella anatipestifer RA-YM] gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer RA-GD] Length = 486 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 179/497 (36%), Positives = 254/497 (51%), Gaps = 66/497 (13%) Query: 32 EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 EVSS DSR +A ++VAI G+ DGH FI A+ +GA+ IV L+D + Sbjct: 22 EVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAKVIV------LEDLPEILDE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V N K L AS YG E N++ VTGT+GK+SV++ + + + G S Sbjct: 76 TITYIKVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVSTLLFDVFKNLGYPSAL 135 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 I ST+ D TTP + L + L+ +QG + +E SSHG+ Q+R +G+ Sbjct: 136 I---STVEYRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEVSSHGIHQNRTEGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD------------ 250 FTN+ DH+DYH+T Y N K F+ L P + AI DD Sbjct: 193 HFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNL-PDSAVAITNLDDKNGLVMLQNTKA 251 Query: 251 ---AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 Y+ + + H R+L V + G ++ N ++V S+ GK Sbjct: 252 KKKTYALKTLSDYHG---RLLEVDFNGMLLNF-------NGKEVWTSLTGK--------- 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTS 366 F VYN L+ G+ +G D +L + +L V GRFE + S GG +V DYAHT Sbjct: 293 --FNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETI--KSEGGIFFVVDYAHTP 348 Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++LE IL +I I + R+I VFGCGGDRD KRP MGKIA + +AI+T DNPR+ED Sbjct: 349 DALENILDSINEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAIITSDNPRTED 408 Query: 425 PEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P I EI G+ P K +R EAI+ AI+ +D+++VAGKGHE V NG Sbjct: 409 PNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKGHEIYQEV-NGV 467 Query: 480 KKMSVDCDIIREILGLI 496 K D ++I E+ ++ Sbjct: 468 KHHFDDKEVILELCKMM 484 >gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX9] Length = 489 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 170/479 (35%), Positives = 246/479 (51%), Gaps = 28/479 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR + AG +FVA+ G DG+ FI AIA GA AIV S + A Sbjct: 22 VTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARAIVTDSREAWAAGGAV---- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P +V N R+ L+ A+ ++G HPE++L AVTGT+GK++ A ++Q+ + Sbjct: 78 -PFYLVGNGRRALAGVAANVFG-HPEHVLKISAVTGTNGKTTTAFLLEQMLKSVNRKCLL 135 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T I + + TTP L + G T +E SSH L Q R+ G+ + Sbjct: 136 IGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEMSSHALAQERVWGVPVD 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH T + YF AK RLFE + E+P + ++ V + G Sbjct: 196 VAMFTNLTQDHLDYHGTMERYFQAKARLFEGV-GAEAPRVAVVNEDSPAGVWLLTRDLGP 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V+S G KV + Q PL G+ VYN L A+ C A+ Sbjct: 255 EVMSYGINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLTGKVNVYNLLAAS--CAAM 312 Query: 326 GIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G L LE + K LH VPGRF+ V N G + VDYAHT ++L ++ R + Sbjct: 313 G--RGLTLEEIAKAAQGLHQVPGRFQTV-PNDLGITVVVDYAHTDDALRNLIGLARELVG 369 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 GR+I +FGCGGDRD+ KRP MG+ A + +D+ ++T+DNPR+E+P I E + G+ Sbjct: 370 KGRVITLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTNDNPRTEEPGAILDEALAGVRETS 429 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKMSVDCDIIREI 492 + + +R AI AI+ + D++++AGKGHE V I+ G V ++REI Sbjct: 430 VECVVEPDRATAIALAIKAVKGGDIVLLAGKGHEKVQILKTGTVPFDDAEVAARVLREI 488 >gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 485 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 159/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IFVA G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N +++D+ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KHNVSYILIDDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKL-KDINNSVINVDDEYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++S G + + + + + + + F L G+F +YN L A Sbjct: 243 EFIVDNPEIISYGIENGDLE----GDYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ R Sbjct: 299 IGIALKIGISMEEILKRVSNIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357 Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I ++ G Sbjct: 358 IKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFI 417 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 418 KSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 494 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 166/470 (35%), Positives = 241/470 (51%), Gaps = 50/470 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ +I + DSR ++ G +FV + G DGH F +A+ GA AIV + Sbjct: 20 QDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDV------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 + P+++V + + LS+ + YG+ + ++ +TGT+GK+S V +I +++G Sbjct: 74 ---DVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + IG T+ D L TTP + L K ++ + V +E SSH L R+ Sbjct: 131 TGLIG---TMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSK 254 G FTNL +DH+DYH+T Y AK LF +L E P A++ ADD S Sbjct: 188 HGCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASA 247 Query: 255 --EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303 E + AH + + G + + K +TI+ +G FD + Sbjct: 248 YFEKVTAAH-----ISTYGIKNNADVMAK--------NITITAQGTSFDLVTNKGTKHIT 294 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F VYN L A CIA GI + +E+LH V GRFE V + + VDYA Sbjct: 295 MSLVGQFNVYNVLAAVATCIAAGIPFETITAAVEELHGVRGRFELVN-QQQEFPVIVDYA 353 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SLE +L R +T G++ VV GCGGDRD+ KRP M KIA++LAD I T DNPRSE Sbjct: 354 HTPDSLENVLNTCRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSE 413 Query: 424 DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DP I ++ G+ + NR +AI AI K DV+++AGKGHET Sbjct: 414 DPRAILRDMEAGVENEYYHSIANREQAIFFAIANAKKGDVVLIAGKGHET 463 >gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis F0399] Length = 495 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 172/471 (36%), Positives = 247/471 (52%), Gaps = 38/471 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR I+ G +FV I G D H FIP GA A++ Q + + + Sbjct: 24 EILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLT------QRENVDVPA 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + L + Y +P ++ +TGT+GK++ + V+ I + +G Sbjct: 78 GISVLRVPDLNAALDIIVPYFY-DYPARSMRVVGITGTNGKTTTSYLVRAILRAAGR--- 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI +D TTP + + + L+ + ++G+ V +E SSH LDQ R+ G Sbjct: 134 RVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257 I+ FTNL +DH+DYH+T + Y AK RLFE + + A+I ADDA + VM Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDA-AGAVM 252 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 RAH C VLS G Q + + V + + + ++ + GEF VYN L Sbjct: 253 -RAHTT-CPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVL 310 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMIL 373 AAG A GI ++ LE VPGRFE V R G+ + VDYAHT + +E +L Sbjct: 311 AAAGAARAEGIGYDVIRAALEGFTGVPGRFELV----RAGQDFSVIVDYAHTPDGMENVL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R +T GRIIVVFGCGGDRD+ KRPIMG+I ++AD+ +T DNPR+EDP I E+ Sbjct: 367 RTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEVE 426 Query: 434 HG-IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 G +P K +R AI A+ D +V+ GKGHET I+ G Sbjct: 427 AGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEG 477 >gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola F0289] Length = 484 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 166/481 (34%), Positives = 260/481 (54%), Gaps = 34/481 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+ G +F+A+ G + DGH FI +A+ QGA A++ L++ T+ Sbjct: 22 EIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVL------LENLPDTLDE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N + V +T + A+ YG + + VTGT+GK+++A+ + + ++ G ++ Sbjct: 76 NVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ D + TTP PI L L+ +++ G + +E SSH + Q R+ G+ Sbjct: 133 AGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQRRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+ ADD + M + Sbjct: 193 TFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGMFMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F K+ H + + + ++GK+ F G+F V N L G Sbjct: 251 ASVKTYSIKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYGTA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379 + +G +L + L V GR E + + G VDYAHT ++L +L I + Sbjct: 306 VLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDS 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G +I V G GG RD+GKRP+M + A+ +D I+T DNPR EDP+ I +++ G+ F Sbjct: 365 KGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIIDDMLAGLD-F 423 Query: 440 IEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +K +R EAIRTA M K DV++VAGKGHE + NG K D ++IREI Sbjct: 424 TQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIF 482 Query: 494 G 494 G Sbjct: 483 G 483 >gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella amnii CRIS 21A-A] Length = 485 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 174/509 (34%), Positives = 275/509 (54%), Gaps = 39/509 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + + LSI + I V+ DSR I G IFVAI G + DGH FI Sbjct: 1 MKLTDLLSE-----VKTLSI--TGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 +AI GA+AI+ L+D + ++ + V++T K + A+ YG + + + Sbjct: 54 NKAIESGAKAIL------LEDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLV 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKAL 174 VTGT+GK+++A+ + + + G +++G ST+ ++ A TTP PI L + L Sbjct: 108 GVTGTNGKTTIATLLYNMFRAFG---YKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S + G + +E SSH + QHR+ G+ G FTNL RDH+DYH+T + Y NAK ++F Sbjct: 165 SKMVEAGCEYAFMECSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAK-KMF 223 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + LPK++ AI ADD + +M + A + S+ F ++ H + + + Sbjct: 224 FDSLPKKAFAITNADDK-NGMIMVQNCKANIKTYSIQRMADF--RARIIECHF-EGMYLD 279 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++GK+ F G+F V N L G + +G +L L L V GR E + + Sbjct: 280 IDGKEVGVQF--IGKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPI-RSPE 336 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G VDYAHT ++L +L I + +G+II V G GG+RD+GKRP+M + A+ +D Sbjct: 337 GFTAIVDYAHTPDALSNVLSAIHDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSD 396 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I+T DNPR EDP+ I +++ G+ + +R EA+RTA ++ K DV++VAG Sbjct: 397 VVILTSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAG 456 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE + G K D +++R+I + Sbjct: 457 KGHEDYQEI-KGVKHHFDDHEVLRDIFNI 484 >gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Heliobacillus mobilis] Length = 528 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 255/488 (52%), Gaps = 41/488 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ ++ DSR + G++F I G K DGH F QA+ GA +VV L+ Sbjct: 53 KQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVERFVDLK------ 106 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 P + V +TR+ L+L A YG E++L + T + ++ + + G Sbjct: 107 ---VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKG--- 160 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + +G TI + + R TTP L K L+ + G V +E SSH LDQHR+ Sbjct: 161 YSVGVIGTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVVMEVSSHSLDQHRVL 220 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADDAYSK 254 G+ +FTNL +DH+DYH T + Y AK +LF EL KES A+I ADD + Sbjct: 221 GVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSAD 280 Query: 255 EVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ + V +V Y + I K + T+ G D L G F Sbjct: 281 YFLQVSS-----VPAVTYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFN 335 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N+L A + +G++ ++E L+ L VPGRFE V + + VDYAHT + L Sbjct: 336 ISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRFESV-DQGQPFSVIVDYAHTPDGLVN 394 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L + G+I+ VFGCGGDRD+ KRPIMG + +++DIA+VT DNPR+E+P +I + Sbjct: 395 VLNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHRIIED 454 Query: 432 IIHG---IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-D 485 I+ G +PG K +R +AI A+ M N D++++AGKGHE IV G++ + D Sbjct: 455 ILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLVMIAGKGHENYQIV--GKEVLPFDD 512 Query: 486 CDIIREIL 493 ++ R++L Sbjct: 513 REVARQVL 520 >gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145] Length = 485 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 251/474 (52%), Gaps = 24/474 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L + L P+ + ++ + DSR + G +FVA+ G DG +I AIA GA AI+ Sbjct: 2 QLRDLLPPLPITFPNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAIL 61 Query: 73 VS-SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 S+ ++ + P ++ LS A R + HP ++ VTGT+GK+S Sbjct: 62 AEGSSLRYEENGGAVCVFMP-----GVKEQLSEIAGRFF-NHPSRHATLIGVTGTNGKTS 115 Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V Q+ ++ G ++ IG T S + + TTP + + + LS L ++G +++ Sbjct: 116 VTHLAAQLAEKLGYTAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAM 175 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L Q R++ ++ TN+ RDH+DYH + Y +AK RLFE+ + + +I Sbjct: 176 EVSSHALVQRRVEALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDF--ELNHRVIN 233 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DD Y ++ ++ A N LS+ QG I + + + T++ EG++ F Sbjct: 234 LDDRYLRDWLEGASNG----LSISLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFST 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G F VYN + A + +A + +H L VPGR E S + VDYAH Sbjct: 290 PLLGRFNVYNVVSAVAIMLAQKQSLTAIAQHCRHLSPVPGRMEAFQAGS-SALVVVDYAH 348 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L+ +L+ +R G++ VFGCGGDRD+GKRP MG++A + AD +VTDDNPR+E Sbjct: 349 TPDALQQVLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEFADRVVVTDDNPRTEA 408 Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P++I A+I+ GI R +A+ IE DV+++AGKGHE ++ Sbjct: 409 PQQIIADIMAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKGHEDYQVI 462 >gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio vulnificus YJ016] gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016] Length = 515 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L +L+ + D PEL + + + DSR ++ G FVAIVG+ DG Sbjct: 27 MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 75 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117 +I +AI QGA A++ S + N I+ ++ + LS A RLY +HPE ++ Sbjct: 76 YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 134 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + Q + +G + +G T + Q TT + + + K L+ Sbjct: 135 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 194 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +AY AKM LF E Sbjct: 195 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 254 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII DD + + G V L + + +TI Sbjct: 255 HQCQH--AIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 308 Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +FD F PL GEF N L+A +A+G+D +L+ L V GR E Sbjct: 309 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 366 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 NS+ ++ VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA L Sbjct: 367 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 425 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD ++TDDNPRSEDP I +++ G+ + + +R A++ A++ D++++AG Sbjct: 426 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 485 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE ++ + S D + +++LG+ Sbjct: 486 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 513 >gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-66c26] gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CIP 107932] gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-76w55] gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-97b34] gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-37x79] gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile CD196] gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile R20291] gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile QCD-32g58] gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile CD196] gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Clostridium difficile R20291] Length = 484 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 174/491 (35%), Positives = 248/491 (50%), Gaps = 43/491 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL D+I D + +L+I IN V +SR + G +F+ I G DGH + Sbjct: 1 MKLNDIIQGLDIINVKGELNI--------DINNVQYNSRKVTKGTLFICIKGFVSDGHKY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 I AI +GA A +V I+ T I V D TRK ++ A Y HP N Sbjct: 53 IKDAIEKGASAFLVEE-------DVEIKGCTFIKVKD-TRKDMAKVADNFYN-HPSQKFN 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+S+ + + +I L+ ++G TI F + + TTP I L Sbjct: 104 VIGVTGTNGKTSITTILNEILT---LNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQY 160 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G + ++E SSH L +R+D G FTNL DH+D+H+ + Y AK + Sbjct: 161 HFNNMLDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEK 220 Query: 233 LFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 LF II DD K++ + + N C V + F+ +K + Sbjct: 221 LF---FKTTMANIINIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSY 277 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + +T S E F P+PG F VYN L C +GI + E L + V GRFE Sbjct: 278 RLITPSYEEVIF---IPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFET 334 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N +G + VDYAHT ++LE +LK + G+II VFGCGGDRD KRP+MG I Sbjct: 335 V-PNDKGISVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQK 393 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVV 464 +D+ I+T DNPR+E+PE I +I+ GI E +R +AI AI M K DV+++ Sbjct: 394 YSDLCIITSDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVII 453 Query: 465 AGKGHETVHIV 475 GKGHET I+ Sbjct: 454 TGKGHETYQII 464 >gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella denticola CRIS 18C-A] Length = 484 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 259/480 (53%), Gaps = 32/480 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+ G +F+A+ G + DGH FI +A+ QGA A++ L++ T+ Sbjct: 22 EIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQGAAAVL------LENLPDTLDE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N + V +T + A+ YG + + VTGT+GK+++A+ + + ++ G ++ Sbjct: 76 NVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ D + TTP PI L L+ +++ G + +E SSH + Q R+ G+ Sbjct: 133 AGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFMECSSHAIHQRRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL RDH+DYH+T + Y NAK ++F + LPK + A+ ADD + M + Sbjct: 193 TFVGGIFTNLTRDHLDYHKTFENYRNAK-KMFFDGLPKNAFALTNADDK-NGMFMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F K+ H + + + ++GK+ F G+F V N L G Sbjct: 251 ASVKTYSIKRMADF--RAKILECH-FEGMYLEIDGKEVGVQF--IGKFNVSNLLAVYGTA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--- 379 + +G +L + L V GR E + + G VDYAHT ++L +L I + Sbjct: 306 VLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFTAVVDYAHTPDALANVLAAIHDVLDS 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G +I V G GG RD+GKRP+M + A+ +D I+T DNPR EDP+ I +++ G+ Sbjct: 365 KGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVILTSDNPRDEDPQAIIDDMLAGLDST 424 Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +K +R EAIRTA M K DV++VAGKGHE + NG K D ++IREI G Sbjct: 425 QKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGHENYQEI-NGVKHHFDDHEVIREIFG 483 >gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 172/509 (33%), Positives = 266/509 (52%), Gaps = 36/509 (7%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 M L +L+ + D PEL + + + DSR ++ G FVAIVG+ DG Sbjct: 5 MNLTNLLAPWLDCPELAD-----------ITVQSLELDSRQVKQGDTFVAIVGHVVDGRQ 53 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117 +I +AI QGA A++ S + N I+ ++ + LS A RLY +HPE ++ Sbjct: 54 YIEKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLY-QHPEMSL 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK+++ + Q + +G + +G T + Q TT + + + K L+ Sbjct: 113 IGVTGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLAD 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG ++E SSHGL Q R+ ++ AG FTNL RDH+DYH T +AY AKM LF E Sbjct: 173 LQQQGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTE 232 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + AII DD + + G V L + + +TI Sbjct: 233 --HQCQHAIINLDDEVGAQWFQELQQ-GVGVSLFPQDASVKALWASSVAYAESGITI--- 286 Query: 297 GKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +FD F PL GEF N L+A +A+G+D +L+ L V GR E Sbjct: 287 --EFDGCFGQGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELF 344 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 NS+ ++ VDYAHT ++LE L+ +R +G + +FGCGGDRD+GKRP+M +IA L Sbjct: 345 QVNSKA-KVVVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERL 403 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 AD ++TDDNPRSEDP I +++ G+ + + +R A++ A++ D++++AG Sbjct: 404 ADHVVLTDDNPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAG 463 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495 KGHE ++ + S D + +++LG+ Sbjct: 464 KGHEDYQVLKHQTVHYS-DRESAQQLLGI 491 >gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 250/466 (53%), Gaps = 29/466 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I ++ ++ + IF A+ G G+ FI A+A GA I+ A Sbjct: 11 KKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQA--------P 62 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I S + ++VV N + + LY K P+ ++AVTGT GK+SV ++ QQ+C +G + Sbjct: 63 ITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122 Query: 146 QIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 IG I++ N+L TT S I L L++ G+ V++EASSHGL Sbjct: 123 SIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSHGL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS 253 DQ+RL IK A +FT+ RDH+DYH+T Y +AK++LF+E + AI+ + + S Sbjct: 183 DQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELS 242 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 K G ++LSV QG I + V + N Q+V + D+ F P+ G + Sbjct: 243 IIQSKITDEFGLKLLSVEQQGD-IQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGRVHIT 301 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEM 371 N L+A L I IG+DSA ++ L L + GR E + + G Y VDYA T N+L Sbjct: 302 NILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKI----QFGNCYAFVDYALTPNALAT 357 Query: 372 ILKNIRTITS-GRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L +R + + GR+I +FG +RD +R MG +A L+D+ IVTD + +EDP IR Sbjct: 358 MLTELRALNNKGRLITIFGGSENRDAIARRVQMGIVASKLSDLVIVTDQDSGNEDPAAIR 417 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EI+ IE NR EAI+ AI ++ D+L++AGKGHET ++ Sbjct: 418 KEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463 >gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya dadantii Ech703] gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703] Length = 494 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 260/485 (53%), Gaps = 23/485 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG+K DG +IPQAIAQG AIV + + + + Sbjct: 19 ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAIVAQADAASPNGTCCE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 P++ +D+ + LS A R Y +HP + L VTGT+GK++ A + Q Q G + Sbjct: 79 LHGVPVVYLDDLNQRLSALAGRFY-QHPSDTLQLIGVTGTNGKTTTAQLLAQWTQALGKT 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G + TT S + + + LS +QG ++E SSHGL QHR++ + Sbjct: 138 SAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVAAMEVSSHGLVQHRVEDV 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A +FTNL RDH+DYH Y AK RLF E + A+I ADD + ++R + Sbjct: 198 SFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSE--HRVGQAVINADDEVGRRWLERLPD 255 Query: 263 AGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNA 315 A ++V +G + LK ++ T+ + + L G F V N Sbjct: 256 A----VAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVIDSSLMGAFNVSNL 311 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L++ +++G ++ L V GR E + R + VDYAHT ++LE L+ Sbjct: 312 LLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRP-TVVVDYAHTPDALEKALEA 370 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSEDP+ I ++I+ G Sbjct: 371 ARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVSDILSG 430 Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G ++ R EA+ +AI DV++VAGKGHE +V N E+ D + + Sbjct: 431 LLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRITVARL 489 Query: 493 LGLIL 497 LG+I+ Sbjct: 490 LGVIV 494 >gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum DSM 6724] Length = 492 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 172/474 (36%), Positives = 257/474 (54%), Gaps = 18/474 (3%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E + + I + + I +++DSR ++ G IF A+ G ++DG +I AI++GA Sbjct: 5 KEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAISKGA 64 Query: 69 EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ + + A IR V+ +SL+ KH NI+ VTGT+GK+ Sbjct: 65 RAVFFEGEVDNFERDVALIRVKEIFDVLSK----VSLYFYNFPSKHL-NIVGVTGTNGKT 119 Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + S + + GL S IG I + + TTP P L + LS + ++GV ++ Sbjct: 120 TTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKFLA 179 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+DG+ L A FTNL +DH+D+H+T + YF AK+++F+ L E A+I Sbjct: 180 MEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHL-EDEGFAVI 238 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 D+ ++K R + A RVL + I+LKK ++ + I+ D L Sbjct: 239 NRDNEWTK----RINLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDTKL 294 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F +YN L A G+ I +G + + L V GR EF+ + + VDYAHT Sbjct: 295 RGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFI-REGQNFNVIVDYAHTP 353 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + L +L+ I+ T GR+IVVFGCGGDRD KR MG+I+ LAD+ IVT DNPR+EDP Sbjct: 354 DGLYNVLQTIKEFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSDNPRTEDPM 413 Query: 427 KIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 KI EI GI + NR EAI+ AIE+ + D +++AGKGHE I+ Sbjct: 414 KIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQII 467 >gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio splendidus 12B01] Length = 494 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 244/461 (52%), Gaps = 24/461 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSAT 85 + ++ DSR + G IFVA+VG+ DG FI +A+A G A++ + + L ++ T Sbjct: 27 VEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGLIEWLDT 86 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P++ ++N LS A R+Y ++ VTGT+GK+++ + Q G S Sbjct: 87 V----PVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSA 142 Query: 146 QIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + F + + TT S I + + LS L+++ + ++E SSHGL Q R+ + Sbjct: 143 VMGTTG--NGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKAL 200 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL RDH+DYH T + Y AK LF + K A+I DD K M N Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMSDLSN 258 Query: 263 AGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A LS GYQ + + V Q++ PL G+F N LVA Sbjct: 259 AIAVSLSPLTGYQ-QSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFA 317 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +++GID ++++ +L V GR E ++ ++ VDYAHT ++LE L +R Sbjct: 318 TLLSLGIDKQILVDTAPQLQPVIGRMELFQVPNKA-KVVVDYAHTPDALEKALAALRVHC 376 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---- 436 SG++ +FGCGGDRD GKRP+M A AD I++DDNPRSE+P I +++ G+ Sbjct: 377 SGKLWAIFGCGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKDMLAGLSKPE 436 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 F+E +R +A++ A+E D++++AGKGHE ++ + Sbjct: 437 AAFVEH-DRYQAVKFALEQAGSDDIILLAGKGHEDYQVLKD 476 >gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 250/465 (53%), Gaps = 20/465 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDF 82 +R + ++ DSR I+ G++FVA+ G++ G ++ A+A GA A++ A + + Sbjct: 19 DRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALAAGAGAVLWEPAGDVAPEPDER 78 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 +A R+ P++ V + + L A+RLYG ++ VTGT GK+SV ++ Q+ R Sbjct: 79 TAAERAGVPLIAVPDLGRRLGPIAARLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDRE 138 Query: 141 GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G S Q TTP + + L+ L QG V++E SSH LDQHR+ Sbjct: 139 AHRCGLVGTLGSGFPDSLQPGTHTTPDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRV 198 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G++ TNLGRDH+DYH Y AK RLF +P A++ DDA+ ++V Sbjct: 199 AGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKSRLFG--VPGLQWAVLNLDDAFGRQVHG- 255 Query: 260 AHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A G R L G+ + + + ++ +S E + PL G F N L Sbjct: 256 ALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLRLRLSTEWGEAPVQAPLLGAFNAANVL 315 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374 A +++G+ +++E L L VPGR E +R GR + VDYAHT +L L Sbjct: 316 AVAAAALSLGVALPVIVERLAGLRPVPGRME---PFTRPGRPSVIVDYAHTPAALRGALA 372 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R G + +VFGCGGDRD+GKRP+MG+ A +LAD ++TDDNPR EDP++I +I Sbjct: 373 AVRAHYRGAVWLVFGCGGDRDRGKRPLMGEAAAELADRVVLTDDNPRREDPDRIIDDIRQ 432 Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G PG + +R AIR A+E +DV++VAGKGHETV + + Sbjct: 433 GAPGRDWPVLRDRAGAIRHAVERAGPEDVVLVAGKGHETVQQIGD 477 >gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. St. Maries] Length = 472 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 161/448 (35%), Positives = 242/448 (54%), Gaps = 24/448 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G+IFV + E F+P A+ GA+ IV +A L ++ I Sbjct: 17 ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68 Query: 93 LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++ AS Y PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 69 IICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128 Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I ++ TTP + L K LS L V ++ +EASSHG+ Q RL G+K A + Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASAAA 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL DH+DYH + + Y+ K +LF E+L E A++ AD E+ + A AG ++ Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELA--AGRNII 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + L ++ +T+ V G+ +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAASGS 306 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386 V +++L GR E +G RI +DYAHTS++L+ L +++ + ++ Sbjct: 307 GHRDV--PIDRLASPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419 Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473 +AI A+ + + VL++AGKGHET Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447 >gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MO10] Length = 509 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 41 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 100 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 101 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 160 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 161 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 220 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 221 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 278 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 279 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 338 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 339 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 397 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 398 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 456 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 457 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 490 >gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium chlorochromatii CaD3] gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium chlorochromatii CaD3] Length = 516 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 167/465 (35%), Positives = 243/465 (52%), Gaps = 31/465 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I VSSDSR + G +FVA+ G DGH FI AI +GA IV ++ +I Sbjct: 40 EHCITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVC------EELPQSI 93 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 L V + RK L+ A+ YG + + + VTGT+GK++ + + ++ + S Sbjct: 94 THGCLYLRVIDARKALAHVAALFYGNPAKQLRFIGVTGTNGKTTTSRIITEMLTAFAVPS 153 Query: 145 FQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T+ +D L TTP L + + G V +E SSH L R+ G+ Sbjct: 154 GYIG-TNLCRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGL 212 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A FTNL +DH+D+H T QAY AK LF++L P + AI+ DDAY+ +++R Sbjct: 213 RFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFDQLQP-DGVAIVNTDDAYAPLMLQRV-- 269 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFP----------LPGE 309 A + + Q + + Q + S+ + + FP L G Sbjct: 270 APSQRVCCTLQANVPSVLQCPQYGQDFQAEVRHASLAATEMELRFPKGETELLTVGLAGS 329 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + V N L AA +G+ A + L +H V GR E VG + +I+VDYAHT ++L Sbjct: 330 YNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDGRMERVGRPNLPYQIFVDYAHTPDAL 389 Query: 370 EMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + L+ ++ + R++V+FGCGG+RD+ KRPIMG IA LAD+ I+T DNPR E P+ Sbjct: 390 QKALETLKALKGEEARLMVLFGCGGNRDRLKRPIMGSIAASLADVVILTSDNPRDESPDA 449 Query: 428 IRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I EI G+ G + +R EAIRTAI L DVL++AGKGHE Sbjct: 450 ILDEIEQGMQGAAHQRIADRAEAIRTAISQLQAGDVLLIAGKGHE 494 >gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium NaphS2] Length = 500 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 174/489 (35%), Positives = 262/489 (53%), Gaps = 39/489 (7%) Query: 13 ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 ELI ++I + + +I+ ++ DSR I+ G +FVA+ G DGH FI A+ +GA A+ Sbjct: 5 ELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAVAV 64 Query: 72 VVS-SAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHP---ENILAVTGTSGK 126 + ++ A P+L+ V+++RK LS A+ YG HP N++ +TGT+GK Sbjct: 65 LSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYG-HPFRTMNLIGITGTNGK 123 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + ++ I +G + IG + I + +TTP + L K L ++ Q T V Sbjct: 124 TTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQSATDV 183 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----E 241 +E SSH LDQ R+ FTN+ RDH+DYH + YF AK LFE L + Sbjct: 184 IMEVSSHALDQGRVADCPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGNQGA 243 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---- 297 + A+I DD + K +M R ++ G L C + K V++S +G Sbjct: 244 ACAVINTDDPWGKHLMALTP---ARTVTYG-------LGNSCDVTAKD-VSVSRKGLHAR 292 Query: 298 ------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ D L G F +YN + AA +A+G+DS +L +E++ VPGR E V Sbjct: 293 LIFEKREEIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELV-P 351 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 N R I VDYAHT ++LE L + ITSGRI+ VFGCGGDRD+GKR MG+IA + Sbjct: 352 NDRSLAIIVDYAHTPDALEKALAATKQITSGRILTVFGCGGDRDKGKRYEMGRIAGANSH 411 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 VT DNPRSEDP I +I G+ ++ + +R +AIR A+ D++++AG Sbjct: 412 RIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLIAG 471 Query: 467 KGHETVHIV 475 KGHE ++ Sbjct: 472 KGHEDYQLM 480 >gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae bv. albensis VL426] Length = 499 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 31 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 91 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ G + ++E SSHGL Q R+ + +AG Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAEHGAQYTALETSSHGLVQGRVKKLHFVAGV 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 269 VAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + +I VDYAHT ++LE L+ +R +G++ + Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KIVVDYAHTPDALEKALRALRVHCAGQLWAI 387 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480 >gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL J1-023] Length = 491 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 41/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N+++ DSR +Q G +F+ I G DGH F +A+ GA AI+ + Sbjct: 22 EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAVAIIAEKQLDV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L V ++++ +++ A YG + ++ +TGT+GK++V+ V+QI + +G + Sbjct: 73 SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + GV+ +E SSH L Q R+ G Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 F NL +DH+DYH T + Y AK LF +L L A++ ADD KE ++ Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 V++ G K A + + I+ G FD P + G F Sbjct: 250 TATAAHVITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFS 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +YN L A A+ I + +E + V GRFE V + + VDY+HT +SL Sbjct: 302 IYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I T DNPRSEDP I A+ Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIAD 420 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I G+PG ++ NR +AIR AI M DV+++AGKGHE ++ Sbjct: 421 MIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKGHEDYQVI 467 >gi|163854998|ref|YP_001629296.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella petrii DSM 12804] gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bordetella petrii] Length = 943 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 245/461 (53%), Gaps = 39/461 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + AG +FVA G DG FI QA+A+GA A V+ A + D + R + V Sbjct: 31 DSRDVAAGDVFVACSGGSADGRAFIGQALARGAAA-VLCQAPAPGDVATDAR----VRAV 85 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + R+ L A YG+ +++AVTGT+GK+S +V Q +G IG T+ Sbjct: 86 PDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIG---TL 142 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D R LTTP + + + L+ + + G V++EASS G++Q RLDG+++ Sbjct: 143 GAMLPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAG 202 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH + + Y AK RLF+ P + A+I ADDA + +++ R L Sbjct: 203 FTNLTRDHLDYHGSMERYEQAKARLFQ--WPGLAAAVINADDAAGERLLRTLP----RGL 256 Query: 269 SVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++GY + + +++ A + Q T++ + + L G V N L+ AG+ Sbjct: 257 ALGYTQQDVPTAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYK 316 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNI 376 +G A + L V GR + V G RG + VDY+HT +SL L + Sbjct: 317 LGWPLAQLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAAL 376 Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + GR++ +FGCGG+RD GKRP MG+IA DLAD V+ DNPR EDP I A+I+ Sbjct: 377 RPVADARGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIV 436 Query: 434 HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 GIP + +R AI I + DV+++AGKGHET Sbjct: 437 AGIPRGARLQVEADRARAIMQTIWAADPDDVVLLAGKGHET 477 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 34/376 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I A +F+A+ G + DGH ++ QA + GA A +V+ ++ P Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVD--------GASLPQ 557 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--IGPT 150 LV+ +TR+ L + ++ ++ V G++GK++ + I L+ +Q G Sbjct: 558 LVLGDTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAI-----LADWQGEAGRL 612 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF- 209 +T +F D I + L L +Q V +H + L + + + Sbjct: 613 ATAGNFNND--------IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALV 664 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN R+H ++ + +A E LP++ A+ DD + + A RVL Sbjct: 665 TNAQREHQEFMHSVEAVAQENGASIEA-LPEDGVAVFPGDDPHCG--IWEAQAGARRVLR 721 Query: 270 VGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G Q G ++ +++ A + + + D + P+ G + NAL A +A G Sbjct: 722 FGLQPGLDVYAEQIDATPHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAP 781 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386 A + L V GR + + G I +D + +N S+ + + + + R +V Sbjct: 782 LAGAVRALSAFSAVAGRMQRQTLDD--GTILIDDTYNANPDSVRAAVDVLARLPAPRALV 839 Query: 387 VFGCGGDRDQGKRPIM 402 + G D G P M Sbjct: 840 LGDMGEVGDNG--PAM 853 >gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholera CIRS 101] gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC27] gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae INDRE 91/1] Length = 495 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 27 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476 >gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Vibrio cholerae LMA3894-4] Length = 495 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 27 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476 >gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum NCIB 8327] Length = 517 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 167/470 (35%), Positives = 243/470 (51%), Gaps = 46/470 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R ++ VSSDSR I G IFVA+ G DGHL I AI GA AIV + + A + Sbjct: 33 DRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEAGAVAIVCEA------YPAEL 86 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144 R L V +RK L+ + YG + ++ VTGT+GK++ A + + +G+ + Sbjct: 87 RDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTNGKTTTARLISSMLNAAGIPA 146 Query: 145 FQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T +D L TTP P L + G +E SSH L R+ G+ Sbjct: 147 GYIG-TGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVMEVSSHALVLDRVHGL 205 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + + FTNL +H+D+H+T + Y AK LF L + A++ ADD + Sbjct: 206 RFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLT-DDGFAVLNADDPQAG-------- 256 Query: 263 AGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTIS---VEGKDFDFLF--------- 304 ++ G +++ +C ++ + IS VEG + F Sbjct: 257 ----FMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSATMQV 312 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPGE+ V N L A + I++G+D A L L + VPGR E + + R VDYAH Sbjct: 313 PLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRCGVVDYAH 372 Query: 365 TSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++L+ L+ +R +T ++ VVFGCGG+RD+ KRP MG+IA +LAD I+T DNPR Sbjct: 373 TPDALQKALETLRAVTPSGSKLSVVFGCGGNRDRKKRPEMGRIAAELADRVILTSDNPRD 432 Query: 423 EDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+PE I E+ G+ G + +R EAIR A+E L D+L+VAGKGHE Sbjct: 433 ENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKGHE 482 >gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae RC9] gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae BX 330286] gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MJ-1236] Length = 499 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 31 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 91 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 446 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480 >gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 495 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 171/471 (36%), Positives = 247/471 (52%), Gaps = 38/471 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR I+ G +FV I G D H FIP GA A++ Q + + + Sbjct: 24 EILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLT------QRENVDVPA 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + L + Y +P ++ +TGT+GK++ + V+ I + +G Sbjct: 78 GISVLRVPDLNAALDIIVPYFY-DYPARSMRVVGITGTNGKTTTSYLVRAILRAAGR--- 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI +D TTP + + + L+ + ++G+ V +E SSH LDQ R+ G Sbjct: 134 RVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257 I+ FTNL +DH+DYH+T + Y AK RLFE + + A+I ADDA + VM Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDA-AGPVM 252 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 RAH C VLS G Q + + + + + + ++ + GEF VYN L Sbjct: 253 -RAHTT-CPVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVL 310 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMIL 373 AAG A GI ++ LE VPGRFE V R G+ + VDYAHT + +E +L Sbjct: 311 AAAGAARAEGIGYDVIRAALEGFTGVPGRFELV----RAGQDFSVIVDYAHTPDGMENVL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R +T GRIIVVFGCGGDRD+ KRPIMG+I ++AD+ +T DNPR+EDP I E+ Sbjct: 367 RTARAVTRGRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEVE 426 Query: 434 HG-IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 G +P K +R AI A+ D +V+ GKGHET I+ G Sbjct: 427 SGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEG 477 >gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 2740-80] gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V52] gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae NCTC 8457] gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae B33] gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae O395] gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae M66-2] gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio cholerae O395] gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae MAK 757] Length = 512 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 245/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 12129(1)] Length = 499 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 31 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYRAG 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 91 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 269 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 446 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480 >gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae TM 11079-80] Length = 499 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 31 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 91 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 151 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 211 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 269 VAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 328 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 329 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 387 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 388 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 446 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 447 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 480 >gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 489 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 258/488 (52%), Gaps = 46/488 (9%) Query: 13 ELINQLSIF----PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 ELI L+I P+ +R+I+ ++ DSR ++ G +F+ I G K DGHLF QAI GA Sbjct: 5 ELIKNLTIELQDGPL---DREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A+ L + +L +TR L+L A+ YG+ ++I +AVTGT+GK Sbjct: 62 VAV-------LAERQLDTGGKATLLTTPDTRSALALLAANYYGRPSKSIRVVAVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ ++ I + +G + +G + + ++ + TTP + + ++ + ++ Sbjct: 115 TTTTDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALCREEKADYI 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPA 244 +E SSH L R+ I FTNL +DH+D+HQ Y AK++LF+ + K++ A Sbjct: 175 VMEVSSHALQLQRVAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 II DD +++E+ + A CR + + + ++ I ++G F + Sbjct: 235 IINIDDPWAEEIFQ-AATIPCRSYGIKKRSDY----------QAGELKIDLDGSSFRLHY 283 Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 L G F +YNAL A + GID L+ L ++ VPGRFE V Sbjct: 284 GDNSLMINMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDF 343 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT + LE IL+ R + R+I VFGCGGDRD+ KRP+MG+IA +D +V Sbjct: 344 A-VIVDYAHTPDGLENILQTSRELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVV 402 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPRSEDP I AEII G+ +EK +R EAIR AI + D++V+AGKGH Sbjct: 403 TSDNPRSEDPHAIIAEIIPGMDK-VEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKGH 461 Query: 470 ETVHIVTN 477 E +V + Sbjct: 462 ENYQLVKD 469 >gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae CT 5369-93] Length = 495 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 244/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 27 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 87 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 146 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 147 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 207 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 264 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 265 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 325 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 384 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 442 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 443 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 476 >gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Anaplasma marginale str. Mississippi] Length = 472 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 242/448 (54%), Gaps = 24/448 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR ++ G+IFV + E F+P A+ GA+ IV +A L ++ I Sbjct: 17 ITADSRSVKPGFIFVCL---SEAAKGFVPDAVKAGAKFIVAGNAGGLPHVD-----HSQI 68 Query: 93 LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++ AS Y G PE + VTGT+GK+SVA F +QI +G + +G Sbjct: 69 IICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGTLG 128 Query: 152 TI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I ++ TTP + L K LS L V ++ +EASSHG+ Q RL G+K + Sbjct: 129 AIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASTAA 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL DH+DYH + + Y+ K +LF E+L E A++ AD E+ + A AG ++ Sbjct: 189 FTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELA--AGRNII 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + L ++ +T+ + G+ +D FP+ G+FQ+ N L A + A G Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAASGS 306 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386 V +++L GR E +G RI +DYAHTS++L+ L +++ + ++ Sbjct: 307 GHRDV--PIDRLAPPRGRMELIGD-----RIIIDYAHTSDALKHALTSLKWHGFPQKTVL 359 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD+ KR MG +A AD+ IVTDDNPRSE+PE IR EI+ IE +R Sbjct: 360 VFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDRG 419 Query: 447 EAIRTAIEMLNKQD-VLVVAGKGHETVH 473 +AI A+ + + VL++AGKGHET Sbjct: 420 DAIHYAVNFAIRNNYVLLIAGKGHETTQ 447 >gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Stigmatella aurantiaca DW4/3-1] Length = 507 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 244/479 (50%), Gaps = 33/479 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G +FVA+ G KEDG ++ +A+++GA A+V S Sbjct: 24 VTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSRGAVAVVSEKPVG--------SSQ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P V ++RK L+L A+ YG+ + +L VTGT+GK++ ++ I + S+ I Sbjct: 76 VPFFKVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTTTTYLLEAISAAAYASTGVI 135 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G ++ + TTP P+ L + + GV V +E SSH L Q R+ G+ A Sbjct: 136 GTLGYKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVMEVSSHALVQERVHGLTFKA 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +FTNL RDH+DYH+ + YF AK RLF E L A++ DD Y+ + Sbjct: 196 AAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVNGDDTYASRIYNELRGQKRM 255 Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 QG I V + T+ D L G + N L A G+ + Sbjct: 256 AWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRLVGPHNLENILAATGVALGA 315 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGR 383 GI V +E++ +PGR E V G + VDYAHT ++L+ L+ RT+ GR Sbjct: 316 GIARRDVQTGIERMGGLPGRMERVENYMPGPAPAVLVDYAHTDDALKRALEASRTLAKGR 375 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +IVVFGCGGDRD+GKRP+MG A + AD+ +VT DNPR+EDP +I ++ G+ Sbjct: 376 VIVVFGCGGDRDKGKRPLMGTAAAEGADLVVVTSDNPRTEDPAEIIEQVTPGLEKGGLRR 435 Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G++ +R AI TA+ + + DV++VAGKGHET IV G +K D Sbjct: 436 ISAGKAKSGEKGYLVDADRRAAIETAVGLAREDDVVLVAGKGHETYQIV--GTEKRPFD 492 >gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 1587] gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-2] Length = 512 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 494 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/457 (34%), Positives = 238/457 (52%), Gaps = 16/457 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR I+ G IFVAIVG+ DG FI +A+AQGA+A+V ++ S Sbjct: 27 VEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGSVEWLDA 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V LS A R+Y ++ VTGT+GK+++ + Q G S +G Sbjct: 87 VPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVMGT 146 Query: 150 TSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + F + + TT S I + + LS L+ + ++E SS GL Q R+ + Sbjct: 147 TG--NGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKALDFEV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GC 265 G FTNL RDH+DYH T + Y AK LF + K A+I DD K M NA Sbjct: 205 GVFTNLSRDHLDYHGTMEEYALAKKSLFTQ--HKCKHAVINVDDEVGKAWMVDLSNAVAV 262 Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +L + GYQ + + V ++ PL G+F N LVA ++ Sbjct: 263 SLLPLSGYQ-QSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFATLLS 321 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +GID +++ +L V GR E ++ ++ VDYAHT ++LE L +R SG++ Sbjct: 322 LGIDKQTLIDTAPQLQPVIGRMELFQVPNKA-KVVVDYAHTPDALEKALAALRVHCSGKL 380 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440 +FGCGGDRD GKRP+M A AD I++DDNPRSEDP I +++ G+ F+ Sbjct: 381 WAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPEAAFV 440 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E +R +A++ A+E D++++AGKGHE ++ + Sbjct: 441 EH-DRYQAVKFALEQAGNNDIILLAGKGHEDYQVLKD 476 >gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [marine gamma proteobacterium HTCC2080] Length = 492 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 238/442 (53%), Gaps = 18/442 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G IFVA+ G + DG +I QA+AQGA A+V++ A + S S++ I+ V Sbjct: 33 DSRKVGEGDIFVALPGVQRDGRDYIKQALAQGA-ALVLAEANDF-NISTDADSSSRIMRV 90 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152 + L A YG + ++AVTGT+GK+SV FV Q+ + G+ + +G S Sbjct: 91 PDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVGTLGSR 150 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + D TTP + + L+ QG+ HV++EASSH L Q RL + L G FTNL Sbjct: 151 LEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSLHTGVFTNL 210 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH Y AK+ LF K AI ADD + +V+ A G + + Sbjct: 211 TRDHLDYHGNAADYAAAKLSLFNTFNLKR--AIFNADDPVASQVLAVA---GASAIGITL 265 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +G H++ AI + + + + ++ + L G F +N + A +G D Sbjct: 266 EGAEAHVQ--VAIRSMRPMLLEIQSPWGAAEINLALSGRFNAFNVVAAIVAVTGLGHDFH 323 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V E L VPGR E + + G R+ VDYAHT ++LE L+ +R T GR+ VVFG Sbjct: 324 RVCAAAESLKPVPGRMERILMS--GNRLAVVDYAHTPDALESALQTLRGETKGRLWVVFG 381 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEA 448 CGGDRD GKR +MG+ A AD +VT DNPR E PEKI ++I G E +R EA Sbjct: 382 CGGDRDSGKRSLMGRSAARWADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAEA 441 Query: 449 IRTAIEMLNKQDVLVVAGKGHE 470 IR A+ + D ++VAGKGHE Sbjct: 442 IRHALALAESGDTVLVAGKGHE 463 >gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Vibrio cholerae RC385] Length = 512 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 482 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 32/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG L++ +AI GA A+V D + Sbjct: 22 ISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAVVT-------DRDISEYPG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +++V++ R ++ AS Y ++ +TGT+GK+SV ++ I ++ + ++ Sbjct: 75 VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYMLKAILEQQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L HR+D Sbjct: 132 GLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVDSCD 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H++ + Y K +LF+ + K++ ++I DD YS +++ + Sbjct: 192 FDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK--MAKKA-SVINIDDKYSSMMIESSKG- 247 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K++ + + + ++ K + +PG F VYNAL A + Sbjct: 248 --KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L + V GRFE V T R +++DYAHT + + I++ ++ +G Sbjct: 306 DFLGIPLRSVREALSHV-TVKGRFEPVET-GRDFYVFIDYAHTPDGIRNIMEALKEYEAG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I+VFG GGDRD+ KRP+MG++A AD I+T DNPRSE+P++I A+I GI Sbjct: 364 RKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKTNCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREILG 494 ++ +R EAIR A+ K DV+++AGKGHET I+ G+K + D +I++EIL Sbjct: 424 YVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII--GDKVIPFDEREIVKEILA 478 >gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase, murE [Flavobacteria bacterium BBFL7] Length = 488 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 168/504 (33%), Positives = 267/504 (52%), Gaps = 37/504 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+DL+YK EL+ I P + + +V DSR I+ G +F+A+ G DGH FI + Sbjct: 4 LKDLLYKVSLELV----IGPT---DIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+A GA A+++ L D+ A + + VDN K L+L + Y +++ V Sbjct: 57 AVASGAVAVLLED---LPDYQA---EHVTYIQVDNAHKALALIGANYYDNPSKDLKLVGV 110 Query: 123 TSGKSSVA--SFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSY 176 T S + Q+ ++ G F+ G ST+ + TTP P+ + L+ Sbjct: 111 TGTNGKTTTTSLLYQLFKKLG---FKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAA 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + GV + +E SSHG+DQ R+ G+ + G FTNL DH+DYH T Y + K R F + Sbjct: 168 MRDAGVDYCFMEVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFF-D 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +LP ++ A+ DD + +++ N R L GY K + I N Q + ++ Sbjct: 227 MLPSDAFALTNRDDKNGEFMLQ---NTKARKL--GYALKTYTDYRAQIIEN-QFGGLQLK 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + + GEF YN L G I +G++S VLE + +L V GRF++ T ++ Sbjct: 281 VNNQELWTKMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQHI 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L+ +L+ I I + ++I V GCGGDRD+ KRP+M IA L+D+ I Sbjct: 341 TAIVDYAHTPDALKNVLETINAIRTRNEKLITVVGCGGDRDKSKRPVMANIAASLSDLII 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPR+E+P+ I ++ G+ K +R AI+TA++M + D++++AGKGH Sbjct: 401 FTSDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKGH 460 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET + NG + D I+ ++L Sbjct: 461 ETYQEI-NGVRSDFNDRLIVADLL 483 >gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pseudofirmus OF4] Length = 487 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 171/477 (35%), Positives = 243/477 (50%), Gaps = 26/477 (5%) Query: 11 FPELINQLSIFPMQWRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 EL N L + +W+ +I + DSR + +G +F I G DGH F QA+ +G Sbjct: 4 LSELTNVLRSY--EWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEKG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A A++ P ++V +T++ ++ A+ YG N++ VTGT+G Sbjct: 62 AVALIAEREVK--------GVEVPTIIVQDTKRTMARLANLFYGDPTSKMNLIGVTGTNG 113 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++V ++QI + + IG T I + TTP I L K + V Sbjct: 114 KTTVTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEMVDADVET 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241 +E SSH L R+ G FTNL DH+DYH+T +AY AK LF +L + Sbjct: 174 ALMEVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEG 233 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF 300 A++ DD + E++K VL+ G + K I + + T+ + Sbjct: 234 KVAVLNRDDEAADELLKMT---TVDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESI 290 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G F VYNAL AA IA GI + + LE +H V GRFE V + + V Sbjct: 291 EIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVDA-GQDYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHTS+SLE +L +R G+I VV GCGGDRD+ KRP+M +IA AD AI T DNP Sbjct: 350 DYAHTSDSLENVLTTVREFAKGKISVVVGCGGDRDRTKRPVMAEIATKYADNAIFTSDNP 409 Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP++I ++ HG+ + +R EAI AI NK D+LV+AGKGHET I+ Sbjct: 410 RSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKGHETYQII 466 >gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 492 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 267/477 (55%), Gaps = 32/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG L++ +AI GA A+V D + Sbjct: 32 ISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNGAVAVVT-------DRDISEYPG 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +++V++ R ++ AS Y ++ +TGT+GK+SV ++ I ++ + ++ Sbjct: 85 VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSVTYMLKAILEQQ---NNKV 141 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L HR+D Sbjct: 142 GLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVMEVSSHSLALHRVDSCD 201 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H++ + Y K +LF+ + K++ ++I DD YS +++ + Sbjct: 202 FDIAVFTNLSQDHLDFHESMEEYAKTKSKLFK--MAKKA-SVINIDDKYSSMMIESSKG- 257 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K++ + + + ++ K + +PG F VYNAL A + Sbjct: 258 --KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFSVYNALAAITVA 315 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L + V GRFE V T R +++DYAHT + + I++ ++ +G Sbjct: 316 DFLGIPLRSVREALSHV-TVKGRFEPVET-GRDFYVFIDYAHTPDGIRNIMEALKEYEAG 373 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I+VFG GGDRD+ KRP+MG++A AD I+T DNPRSE+P++I A+I GI Sbjct: 374 RKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPRSENPKEIIAQIEEGIKKTNCP 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREILG 494 ++ +R EAIR A+ K DV+++AGKGHET I+ G+K + D +I++EIL Sbjct: 434 YVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII--GDKVIPFDEREIVKEILA 488 >gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Desulfobacca acetoxidans DSM 11109] Length = 531 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 164/507 (32%), Positives = 266/507 (52%), Gaps = 47/507 (9%) Query: 9 KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ +L++ L + E+ + ++ S + +G +FVA+ G + DGHL+I +AI +G Sbjct: 10 KNLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERG 69 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILV---VDNTRKFLSLFASRLYGKHPE---NILAVT 121 A +V+ A TP +V V +TR L+ A+ Y HP ++ +T Sbjct: 70 AAVVVLEDAVE----------PTPGVVCVQVPDTRLALAHMAAAFY-DHPSCNLTVVGIT 118 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT+GK++ + ++ I Q SG IG + S + + +TTP + L L+ + + Sbjct: 119 GTNGKTTTSYLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAA 178 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +E SSH LD R+ ++ AG FTNL +DH+DYH ++YF K RLF ELL Sbjct: 179 AVDCAIMEVSSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTD 238 Query: 241 --ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295 + P A+I DD + ++++ + VL+ G+ G I + + H Q + Sbjct: 239 CGDGPQLAVINRDDPWGQKLLPQTSPP---VLTYGFAAGADIRPEDITLTHQGIQARLHT 295 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D + PL G + +YN L A+G + +GI V+ L + V GR E V + Sbjct: 296 PYGRLDIVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQP 355 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE +L ++ + RII VFGCGGDRD+ KRP+MG++ +D+ I+ Sbjct: 356 -LVLVDYAHTPDALEKVLAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVII 414 Query: 416 TDDNPRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNK 458 T DNPR+E+P I +I+ G+ G++ +R +AIR AI + N Sbjct: 415 TSDNPRTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNP 474 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485 +V+++AGKGHET I+ G +++ D Sbjct: 475 GEVILLAGKGHETYQIL--GTRRIHFD 499 >gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella oralis ATCC 33269] Length = 483 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 176/508 (34%), Positives = 266/508 (52%), Gaps = 40/508 (7%) Query: 1 MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL +L+ P +I + SI I V+ DSR I G +F+A+ G + DGH F Sbjct: 1 MKLNELLKNIKPVAVIGEQSI--------DIKGVNIDSRKIAEGHLFIAMKGTQVDGHRF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 IP+AI QGA+AI+ +D + V++T A+ YG + + Sbjct: 53 IPKAIEQGAKAILC------EDMPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK++VA+ + + ++ G ++ G ST+ ++ +D + TTP PI L + Sbjct: 107 VGVTGTNGKTTVATLLYNMFRKMG---YKCGLLSTVCNYIEDEAIPADHTTPDPIELNEL 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + + G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y NAK Sbjct: 164 LGRMVNTGCEYAFMECSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAF 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+E LPK + AI ADD K M N V + + ++ H + + + Sbjct: 224 FDE-LPKGAFAITNADD---KNGMIMVQNTKATVKTYSTRSAADFKARILECHF-EGMYL 278 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++G + F G+F V N L G +G +L + LH V GR E + + Sbjct: 279 DIDGHEVGVQF--IGKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIHS-P 335 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G VDYAHT ++LE +LK I + + G++I V G GG+RD+GKRP+M + A+ +D Sbjct: 336 EGYTAIVDYAHTPDALENVLKAIHEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSD 395 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 I+T DNPR E+P+ I +++ G+ I +R EAIRTA M K DV++VAG Sbjct: 396 KVIITSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAG 455 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHET + G K D +I+ I G Sbjct: 456 KGHETYQEI-KGVKYHFDDKEILNNIFG 482 >gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia bercovieri ATCC 43970] Length = 471 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 241/474 (50%), Gaps = 20/474 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVAIVG++ DG +IPQAIAQG AIV + D S P++ + Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 N + LS A + Y + ++ VTGT+GK++ + + Q Q G +S +G Sbjct: 64 RNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L L QG T ++E SSHGL Q+R+ + A FTNL Sbjct: 124 LLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----L 268 RDH+DYH +Y AK LF + II ADD + + + A L Sbjct: 184 SRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVSMEGHL 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G++G ++ +V N +T + L G F V N LVA +++G Sbjct: 242 PAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSLGYP 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A +L L V GR E + + VDYAHT ++LE L R G++ VF Sbjct: 302 LAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQLWCVF 360 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---- 444 GCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G+ Sbjct: 361 GCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAGHALAI 417 Query: 445 --RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N S + R +LG++ Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470 >gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermoanaerobacter sp. X514] gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X514] gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X561] gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X513] gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 483 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 265/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG ++ +AI GA A+V ++++ Sbjct: 22 ISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVADR--EIKEYPGI---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L +R+D + Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+HQ + Y K +LF+ + K + ++I DD YS ++ ++ Sbjct: 192 FDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 246 KAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + +++DYAHT + ++ I++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNIMEALKEYKTG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG++A AD I+T DNPRSEDP +I ++I GI Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAIR A+ K DV+++AGKGHET I+ G K + D +I++EIL Sbjct: 424 YVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477 >gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus licheniformis ATCC 14580] gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580] Length = 488 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL L+ K+ P Q + I + DSR ++ G +FV I G DGH Sbjct: 1 MKLTKLLTYLKNVPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 + QA +GA AIV + ++ P++++ +T++ L++ + YG+ + + Sbjct: 53 YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK+S + V++I +++G + IG T I + + TTP + L K Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + QGV +E SSH L R+ G +FTNL +DH+DYH+T + Y +AK LF Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223 Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +L E+P A++ ADD S A +L+ G Q V A + Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQND----ADVMA----EN 272 Query: 291 VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + ++ +G FD + PL G F VYN L AA + IA I A + E +E L Sbjct: 273 IKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKG 332 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GRFE V + + VDYAHT +SLE +L R +T G++ VV GCGGDRD+ KRP Sbjct: 333 VRGRFELVDA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPK 391 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459 M KIA+DLAD + T DNPRSE+P I ++ G+ G NR +AI AI K Sbjct: 392 MAKIAVDLADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKG 451 Query: 460 DVLVVAGKGHET 471 DV+++AGKGHET Sbjct: 452 DVVLIAGKGHET 463 >gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila simulans] gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila simulans] Length = 423 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 157/422 (37%), Positives = 239/422 (56%), Gaps = 24/422 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86 +I V+ + + I+ G++FV + E ++I Q ++ GA+AI+ S + + S I Sbjct: 18 EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73 Query: 87 -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 R + N ++ S SR Y K P+ + AVTGT+GK+SV F +QI Q SG ++ Sbjct: 74 TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133 Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T + + N LTTP L L +S V H+ +E+SSHG+DQ+R+ G Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +KL A +FTN +DH+DYH++ Y K RLF E+LP+ AI+ AD ++K A Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +V++ G +G I L + + N Q +T+ ++ + ++ FP+ G+FQ YN L A G+ Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G++ + +EKL PGR E V + +VDYAHT ++L+ L +++ + Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 +II+VFGCGG+RDQ KR MGKIA AD I+TDDN R EDP KIR +I+ P +E Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALE 420 Query: 442 KG 443 G Sbjct: 421 IG 422 >gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii RSA 493] gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii 'MSU Goat Q177'] gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii Dugway 5J108-111] gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 331] gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Coxiella burnetii RSA 334] gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuG_Q212] gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Coxiella burnetii CbuK_Q154] Length = 489 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 246/466 (52%), Gaps = 32/466 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + +DSR IQ G +F+A G + DG +I +A+ + A A+ Y ++ +I++ Sbjct: 23 IKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF----YEANQYNPSIQTK 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ +N + + A+R Y P I+ +TGT+GK+S A F+ Q Q G+ Sbjct: 79 VPLIPFENLQHRIGEIAARFY-DDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIRCGV 137 Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + S + + TTP PI L +A + + QG +++E SSH L Q R++G++ Sbjct: 138 IGTLGYGFLGSLHKTSH-TTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEGVQF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FT L RDH+DYH + Y AK LF++ P ++ DDA K ++ + Sbjct: 197 DIAVFTQLSRDHLDYHGDMENYARAKELLFQQ--PGLHTGVVNCDDALGKRIIAHYRH-- 252 Query: 265 CRVLSVGYQGKFIHLKKVC-----AIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ VGY + +V AI Q V + + F PL G F + N L Sbjct: 253 -QLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLL 311 Query: 317 -VAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 V + LC+ I D AL+ L +L VPGR + V + R +I VDYAHT ++LE L Sbjct: 312 AVLSVLCLCEIPFDKALL--ELSQLRNVPGRMQVVDSQ-RQPQIIVDYAHTPDALEKALT 368 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R GR+I VFGCGGDRD+GKRP M +A AD I+T+DNPR+E P I +I Sbjct: 369 ALREHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQA 428 Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G + K +R EAIR A++M D++++AGKGHET + + Sbjct: 429 GFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKGHETTQTIAD 474 >gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 494 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 163/483 (33%), Positives = 247/483 (51%), Gaps = 29/483 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV------VSSAYSLQDFSAT 85 E+ +DSR + G +FVA+ G +G A GA+ IV + L Sbjct: 19 EIRTDSRKVGRGDVFVAVPGVAANG-----GAGVDGADFIVKAWAAGAGAVVCLPARVEA 73 Query: 86 IRSNTP----ILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139 ++ P + D+ R + L YG P ++AVTGT+GK+++ + + Sbjct: 74 ALADAPEGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSA 133 Query: 140 SGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +G S FA D LTTP I L + GV +E SSH LDQ R Sbjct: 134 LGRRAGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + GI+ TNL +DH+DYH + Y+ AK RLF EL + + ADDA+ + ++ Sbjct: 194 VAGIRFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLG 253 Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G +F+H + V + + ++ EG+ ++ L G N Sbjct: 254 EVPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNL 313 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L +C+ +G+ + L VPGR E + N RG I+VDYAHT ++LE +L+ Sbjct: 314 LAVQAVCLGMGL-APQDFASLAGFTGVPGRLERI-VNPRGLDIFVDYAHTPDALENVLRA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R + RI+ VFGCGG+RD+ KRP+MG+ AD+A++T DNPR EDPE I A+++ G Sbjct: 372 LRAVGFSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPG 431 Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIRE 491 + G + +R AI A+ +L DVL+VAGKGHE+ + G++K+ D +IRE Sbjct: 432 LAGARKVVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQI--GDRKVPYSDQQVIRE 489 Query: 492 ILG 494 ILG Sbjct: 490 ILG 492 >gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Cellulophaga algicola DSM 14237] Length = 487 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 41/482 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N + DSR + G +FVAI G DGH +I +AIA GA+ I+ + TI + Sbjct: 24 VNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAKTIICET------MPVTIVDD 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + VDN K L++ AS Y +N+ + VTGT+GK++++S + Q+ +++G F++ Sbjct: 78 VTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISSLLYQLFKKAG---FKV 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G STI D TTP + + L ++ GV +E SSHG+ Q R +G+ Sbjct: 135 GLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVSSHGIHQKRTEGLA 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL DH+DYH+T Y + K LF+ L PK++ + DD K + N Sbjct: 195 FEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNL-PKKAFVLTNVDD---KNGLVMLQNT 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVA 318 R K+ + K A + Q + G+ + L G+F YN L Sbjct: 251 KAR--------KYTYALKTYADYKAQILENQFNGQLLKIDGSEVWSKLIGDFNAYNMLAI 302 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +G++ +L L +L V GRF++ + R I VDYAHT ++L+ +L I Sbjct: 303 YGTAQLLGLEKLEILRLLSELENVDGRFQYFISKERITAI-VDYAHTPDALKNVLDTINK 361 Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---- 432 + +G +I V GCGGDRD+ KRP+MG IA +++ I T DNPR+E+P++I EI Sbjct: 362 LRTGNENVITVVGCGGDRDRSKRPVMGHIASEMSTTTIFTSDNPRTENPDEILKEIEAGV 421 Query: 433 -IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + + + +R +AI+TA ++ N D++++AGKGHET + NG + D ++++ Sbjct: 422 EVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKGHETYQEI-NGVRAHFDDYEMVQN 480 Query: 492 IL 493 +L Sbjct: 481 LL 482 >gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 483 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 265/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG ++ +AI GA A+V ++++ Sbjct: 22 ISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVADR--EIKEYPGI---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L +R+D + Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+HQ + Y K +LF+ + K + ++I DD YS ++ ++ Sbjct: 192 FDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 246 KAKVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFNVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + +++DYAHT + ++ I++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNIMEALKEYKTG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG++A AD I+T DNPRSEDP +I ++I GI Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAIR A+ K DV+++AGKGHET I+ G K + D +I++EIL Sbjct: 424 YVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477 >gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. WCH70] gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70] Length = 490 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 171/506 (33%), Positives = 258/506 (50%), Gaps = 53/506 (10%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKLQ L+ DF + + I + DSR ++ G +F+ I G DGH Sbjct: 1 MKLQTLLSYLHDFTTYVGE---------NPTITSIEMDSRQVKNGALFICIKGFTVDGHD 51 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPEN 116 F QA+ GA A++ + + P++VV ++R+ +++ A YG+ H + Sbjct: 52 FAKQAVENGAVAVIAERPLDV---------DVPVIVVRDSRRAMAMLADAFYGQPTHRLH 102 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175 ++ VTGT+GK++ ++ I +++ + IG I + TTP + L + Sbjct: 103 LIGVTGTNGKTTTTHIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFK 162 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + +GV +E SSH L R+ G FTNL +DH+DYH T + Y NAK LF Sbjct: 163 QMVDEGVDVAVMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFA 222 Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +L E P A++ DD SK H V++ G + + K + Sbjct: 223 QLGNRYDHERPKFAVLNNDDPASKYY---KHMTAASVITYGIETDSDIMAK--------K 271 Query: 291 VTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + I G FD + P L G F VYN L A C+ GI +++E +E++ Sbjct: 272 IDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISG 331 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GRFE V + + VDYAHT +SLE +LK IR ++ VV GCGGDRD+ KRP+ Sbjct: 332 VAGRFETVD-EGQNFTVIVDYAHTPDSLENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPL 390 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459 M K A+ AD+AI T DNPRSEDPE+I ++ G+PG ++ +R EAI AIE + Sbjct: 391 MAKTAVKYADVAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEG 450 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485 D++++AGKGHET I+ G++ + D Sbjct: 451 DIILIAGKGHETYQII--GDRVIDFD 474 >gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae MZO-3] Length = 512 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I + V + + + + PL GEF N L+A +++G Sbjct: 282 VAKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 164/466 (35%), Positives = 249/466 (53%), Gaps = 29/466 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I ++ ++ + IF A+ G G+ FI A+A GA I+ A+ Sbjct: 11 KKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAH-------- 62 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I S + ++VV N + + LY K P+ ++AVTGT GK+SV ++ QQ+C +G + Sbjct: 63 ITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAA 122 Query: 146 QIGPTSTISSFAQDNR-----------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 IG I++ N+ TT S I L L++ G+ V++EASSHGL Sbjct: 123 SIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFVALEASSHGL 182 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYS 253 DQ+RL IK A +FT+ RDH+DYH+T Y +AK++LF+E + AI+ + + S Sbjct: 183 DQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELS 242 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 K G ++LSV QG I + V + N Q+V + D+ F + G + Sbjct: 243 IIQSKITDEFGLKLLSVEQQGD-IQIINVQSSLNGQKVHFRYKNSDYKFEVLVIGRVHIT 301 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEM 371 N L+A L + G DSA ++ L L + GR E + + G Y VDYA T N+L Sbjct: 302 NILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKI----QFGNCYAFVDYALTPNALAT 357 Query: 372 ILKNIRTITS-GRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L +RT+ S GR+I +FG +RD +R MG +A L+D+ IVTD + +EDP IR Sbjct: 358 MLTELRTLNSKGRLITIFGGSENRDAIARRMQMGIVASKLSDLVIVTDQDSGNEDPAAIR 417 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EI+ P IE NR EAI+ AI ++ D+L++AGKGHET ++ Sbjct: 418 KEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVL 463 >gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 494 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 158/456 (34%), Positives = 247/456 (54%), Gaps = 15/456 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88 I + DSR I+ G FVAI G+ DG FI AI QGA AI+ + ++ + S Sbjct: 27 IQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAAIQQGANAIIAEAGEQNVHGKVEQLGS 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + + D ++K LS ASRL ++AVTGT+GK+++ + Q + SG + +G Sbjct: 87 VSVVYIADLSQK-LSQLASRLQPLSYNQLIAVTGTNGKTTITQLIAQWLELSGQRAAVLG 145 Query: 149 PTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + S TT + + + + LS L QG + ++E SSHGL Q+R+ + Sbjct: 146 TTGNGFLESLTPALN-TTGNALEIQQTLSELEDQGAQYTAMEISSHGLVQNRVKALSFSV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G F+NL RDH+DYH T + Y AK+ LF + + A+I DD ++ N Sbjct: 205 GVFSNLSRDHLDYHGTMEEYARAKLSLFT--VHDCAKAVINIDDTVGASWVELLDNCIPV 262 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIA 324 LS GK + +V +++ +T+S G+ + F PL GEF N +VA ++ Sbjct: 263 SLSPIQTGKGVFATQVQ--YSEAGITLSFSGQYGEGRFTVPLIGEFNASNVMVAFATLLS 320 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +GID +++E +L V GR E + ++ VDYAHT ++LE L ++ +GR+ Sbjct: 321 LGIDKQILVESASQLKPVLGRMELFHAQGKA-KVVVDYAHTPDALEKALLALKVHCNGRL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441 +FGCGGDRD GKRP+M I LAD+ I+TDDNPRSE P I +++ G+ I Sbjct: 380 WAIFGCGGDRDTGKRPMMASIGEKLADVVILTDDNPRSESPSAIVKDMLAGMASPENAIV 439 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +R A+ A++ + D++++AGKGHE ++ N Sbjct: 440 EHDRYNALVHALKHSSGDDIILIAGKGHEDYQVLAN 475 >gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacillus sp. BT1B_CT2] Length = 488 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL L+ K+ P Q + I + DSR ++ G +FV I G DGH Sbjct: 1 MKLTKLLTYLKNAPSYAGQ--------EDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 + QA +GA AIV + ++ P++++ +T++ L++ + YG+ + + Sbjct: 53 YARQAAEKGAAAIVAERE---------VDADVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK+S + V++I +++G + IG T I + + TTP + L K Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + QGV +E SSH L R+ G +FTNL +DH+DYH+T + Y +AK LF Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223 Query: 236 EL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +L E+P A++ ADD S A +L+ G Q V A + Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYF---AQVTSAHLLTYGIQND----ADVMA----EN 272 Query: 291 VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + ++ +G FD + PL G F VYN L AA + IA I A + E +E L Sbjct: 273 IKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKG 332 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GRFE V + + VDYAHT +SLE +L R +T G++ VV GCGGDRD+ KRP Sbjct: 333 VRGRFELVDA-GQDFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPK 391 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459 M KIA+DLAD + T DNPRSE+P I ++ G+ G NR +AI AI K Sbjct: 392 MAKIAVDLADEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKG 451 Query: 460 DVLVVAGKGHET 471 DV+++AGKGHET Sbjct: 452 DVVLIAGKGHET 463 >gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae AM-19226] Length = 512 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI +AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE + N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVQAN 493 >gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae V51] Length = 512 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 153/454 (33%), Positives = 243/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H ++ VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKNALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---- 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ + E+ Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLT-YPERAHIEH 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM 15606] Length = 483 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 258/478 (53%), Gaps = 31/478 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+AG +FVAI G + DGH FI +AI GA+A++ ++ + Sbjct: 22 EITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELGADAVLC------EELPEKLSD 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + V++T + A+ YG H ++ VTGT+GK+++A+ + + ++ G ++ Sbjct: 76 HVTYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L+ + G + +E SSH + Q R+ G+ Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K G FTNL RDH+DYH+T + Y NAK F+ LPK++ AI ADD + +M + Sbjct: 193 KFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMIMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F C + + + ++G++ F G+F V N L G Sbjct: 251 ATVKTYSIRSMADFRARILECHF---EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I +G +L L LH V GR E + + G VDYAHT ++L +L I + G Sbjct: 306 IMLGKKPEDILLVLSTLHSVSGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364 Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 + +I V G GG+RD+GKRP+M + A+ +D I+T DNPR EDP++I E++ G+ Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEDPQEIINEMLAGLNEQQ 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R EAIRTA M K DV++VAGKGHE + G K D +++ EI Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHENYQEI-KGVKHHFDDKEVLHEIF 481 >gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 490 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 166/503 (33%), Positives = 258/503 (51%), Gaps = 49/503 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 ++ D EL+ L F +Q E+ I+ + DSR ++ G +F+ I G DGH F A Sbjct: 1 MVGMDLRELLTHLHDF-VQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMA 59 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121 + +GA AI+ ++ ++S T++ +++ A Y + + +++ VT Sbjct: 60 VEKGAVAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVT 110 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT+GK+++ ++ I + + IG I + D + TTP + L K + + Sbjct: 111 GTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEE 170 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--- 237 V +E SSH LD R+ G F+NL +DH+DYH T + Y AK LF +L Sbjct: 171 NVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNA 230 Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 PK A++ ADDA ++E +K N V++ G + + I + I Sbjct: 231 YNHNRPK--FAVLNADDAATEEYIK---NTAATVITYG-------IDRESDI-RATNIQI 277 Query: 294 SVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + G FD P L G+F VYN L A C+ GI ++++E ++ L V G Sbjct: 278 TNSGTTFDLTTPTETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSG 337 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 RFE V + + VDYAHT +SLE +LK ++ I V+ GCGGDRD+ KRPIM + Sbjct: 338 RFEVVDA-EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMAR 396 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462 IA + + AI+T DNPRSEDP I ++ G+ ++ +R EAIR A+E ++ DV+ Sbjct: 397 IAAEYSTQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVI 456 Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485 V+AGKGHET I+ G+K D Sbjct: 457 VIAGKGHETYQII--GKKVFDFD 477 >gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio cholerae 623-39] Length = 512 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 10/454 (2%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I++G FVAI G+ DG FI AIAQGA ++ + + R+ Sbjct: 44 ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYRAG 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ + + LS A RLYG H + VTGT+GK+++ + Q + G + +G Sbjct: 104 VPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + + TT + + + L L+ +G + ++E SSHGL Q R+ + +AG Sbjct: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 F+NL RDH+DYH T +AY AK LF E + AII DDA + +K+ A G + Sbjct: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ + I ++V + + + + PL GEF N L+A +++G Sbjct: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + +L KL V GR E + ++ VDYAHT ++LE L+ +R +G++ + Sbjct: 342 EKSALLATAPKLRPVLGRMELFQREQKA-KMVVDYAHTPDALEKALRALRVHCAGQLWAI 400 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 GCGGDRD+GKRP+M IA AD I+TDDNPRSE P+ I A+++ G+ IE Sbjct: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEH- 459 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R +A A++ QD++++AGKGHE ++ N Sbjct: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLAN 493 >gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria innocua Clip11262] gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262] Length = 491 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 237/467 (50%), Gaps = 41/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N+++ DSR +Q G +F+ I G DGH F +A+ GA AI+ + Sbjct: 22 EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLGAVAIIAEKQLDV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L V ++++ +++ A YG + ++ +TGT+GK++V+ V+QI + +G + Sbjct: 73 SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + GV+ +E SSH L Q R+ G Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 F NL +DH+DYH T + Y AK LF +L L A++ ADD KE ++ Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 +++ G K A + + I+ G FD P + G F Sbjct: 250 TATAAHIITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFALKIKMIGNFS 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN L A A+ I + +E + V GRFE V + + VDY+HT +SL Sbjct: 302 VYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I T DNPRSEDP I + Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIED 420 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I G+PG ++ NR +AIR A+ M DV+++AGKGHE ++ Sbjct: 421 MIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHEDYQVI 467 >gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria grayi DSM 20601] Length = 494 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 231/458 (50%), Gaps = 23/458 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + +G +F+ I G DGH F QA A GA AI+ I Sbjct: 25 EITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAILAEKE---------IDV 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++ V ++++ +++ A R YG + + + VTGT+GK++V V+QI + +G + Sbjct: 76 SIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVEQIVRDAGSETGL 135 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + + V V++E SSH L Q R G Sbjct: 136 IGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHALVQGRTYGTDFD 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260 FTNL +DH+DYH+T + Y AK LF +L E P AII DD S+ MK A Sbjct: 196 IAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAIINQDDPVSQR-MKTA 254 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + F V + + DFD + G+F +YN L A Sbjct: 255 TAAPVITYGIDKAADF-GATDVMVTSSGTTFKLHTPDGDFDVRIKMIGKFSIYNCLAALA 313 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 A+ I + LEK+ V GRFE V + + VDYAHT + L +L+ I Sbjct: 314 TSYALEIPIHQAITSLEKVQGVAGRFEIVDAG-QDFTVIVDYAHTPDGLLNVLETIEEFK 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 R+ + GCGGDRD+GKRP M KIA+D A + T DNPRSEDPE I +++ G+P Sbjct: 373 RSRVFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSDNPRSEDPEAIIQDMLAGLPANA 432 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + +R EAI A+ DV+++AGKGHET I+ Sbjct: 433 VYQVRTDRKEAITYAVNEAQAGDVILIAGKGHETYQII 470 >gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 490 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 247/467 (52%), Gaps = 39/467 (8%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P +W I +S S+ ++ IF A G K DGH FI +AI +GA +V L Sbjct: 21 PQKW----IKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPVL-- 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ 138 + N ++V N+ L +S Y HP ++ +TGT+GK+SVA+ + + Sbjct: 75 ----LHKNITYVIVKNSMDALGTISSNFYD-HPTKKIKLVGITGTNGKTSVATILHHLFY 129 Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G S I T I +Q+ + TTPS + + K L+ +G + +E SSHG+ Q Sbjct: 130 KMGEKSILIS-TMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQ 188 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ G+ G TN+ DH+DYH++ + Y + K FE LPK + A+I +DD S E+ Sbjct: 189 KRIAGLLFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEI 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +K N ++ G + K + K+ IH Q + ++G F F F L GEF V N Sbjct: 249 IK---NVLAKIYFYGLKKKTDYRIKIMKKNIHGNQ---LLIDGHKF-FTF-LIGEFNVSN 300 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L I +G +L+ + + + GRFE + S G RI VDYAH + ++ +LK Sbjct: 301 LLACYATAILLGKKKEEILQKINTIPPIKGRFEQFISYS-GIRIIVDYAHNPDGIKNLLK 359 Query: 375 NIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 I+ I R+I + GCGG+RD+ KR +MGKI + D++I T DNPR EDPEKI + Sbjct: 360 AIQEIKKQEERLICIIGCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILID- 418 Query: 433 IHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + ++ K NR EAIRTAI+M ++D++V+AGKGHE Sbjct: 419 MKNFRSYLNKDKEDILTIVNRKEAIRTAIQMAREKDIIVIAGKGHEN 465 >gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 500 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + NA + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPNAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Selenomonas flueggei ATCC 43531] Length = 496 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 168/480 (35%), Positives = 248/480 (51%), Gaps = 55/480 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR G +F I G D H FIP GA A++ A S + Sbjct: 24 EITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGARAVLTERA------SVDVPD 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V N ++ L Y +P ++ +TGT+GK++ + V+ I + +G Sbjct: 78 GVAVLYVPNLQEALDTIVPYFY-DYPARAMRVIGITGTNGKTTTSYLVRAILRHAG---H 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + +D L TTP I L + L+ + ++G+ V +E SSH L R+ G Sbjct: 134 RVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEVSSHALALGRVAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVM 257 I+ +FTNL +DH+D+H+T + Y AK LFE + + A++ ADDA S+ + Sbjct: 194 IEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTAVLNADDAASETMR 253 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LFPL----P 307 H C V++ G H + A Q V ++ +G + LF L Sbjct: 254 AHTH---CPVITYGVD----HPADLTA----QDVQLACDGMELTLMHGGKRLFHLHTGIT 302 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAH 364 G F V+N L A G +A +++A + L VPGRFE V R G+ + VDYAH Sbjct: 303 GLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELV----REGQDFAVIVDYAH 358 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + +E +L+ R +T GRII VFGCGGDRD+ KRPIMG+I ++ADIAI+T DNPR+ED Sbjct: 359 TPDGMENVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRTED 418 Query: 425 PEKIRAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P I E+ G+ P +K +R AI AI+ D +V+ GKGHET I+ +G Sbjct: 419 PAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKGHETYQILKDG 478 >gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t. morphotype B'] Length = 481 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 162/461 (35%), Positives = 234/461 (50%), Gaps = 27/461 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I+E+ DSR +F+AI G DGH ++ AI GA IVVS A + Sbjct: 21 RDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGARVIVVSDA-------VFVA 73 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSS 144 +N ++ V +TR ++ A YG HP LA VTGT+GK+S + +I + Sbjct: 74 ANIAVVRVKDTRAVMAAIAGNFYG-HPSKELALVGVTGTNGKTSTTFLLAEILEAYRKKI 132 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I + TTP I L K ++++ V +E SSH L +R+DG Sbjct: 133 GVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVSSHALVLNRVDGCD 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL +DH+D+H+T Y AK +LF +II D YSK ++ + Sbjct: 193 FDIGVFTNLTQDHLDFHETMDNYAAAKAKLFSMC----KISIINVDSPYSKVMLD---SC 245 Query: 264 GCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 ++ G + K IH ++ Q + GKD + P+PGEF VYN + A Sbjct: 246 KAETITYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGEFTVYNTMCAIICA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+ + L+ + VPGR + +++G + VDYAHT + LE +L I+ G Sbjct: 306 YKLGVPLDFIAXALKNVKGVPGRVQSF-QSTKGYSVLVDYAHTPDGLENVLTAIKQFAKG 364 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-----IHGIP 437 I+ VFGCGGDRD KRPIMG+IA + +T DNPRSE+P++I +I H P Sbjct: 365 DIVTVFGCGGDRDNKKRPIMGEIASKYSTKVYITSDNPRSEEPDEIIRQIEVGAKKHITP 424 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 IE +R AI A+ K DV+++AGKGHET + +G Sbjct: 425 YEIE-SDRKTAIIKALSFAKKDDVILIAGKGHETYQHLKDG 464 >gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 485 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 248/471 (52%), Gaps = 34/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RK + + DSR I+ +IF+A G DGH +I A+ GA I+VS + Sbjct: 18 DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSK-------KVEM 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----Q 138 + N ++V++ R L AS Y + P+ I+ VTGT+GK+S ++++ Sbjct: 71 KHNVSYVLVEDIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPIT 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 R G ++IG F N TTP + L K + + +V +E SSH L+ R Sbjct: 130 RIGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGR 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + FTNL +DH+DYH T + YF AK +LF +L + ++I DD Y K + Sbjct: 184 VEVVDFDYALFTNLTQDHLDYHITMENYFQAKRKLFLKL-KDINNSVINIDDKYGKRLYD 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++S G G + + + + I + + F L G+F +YN L A Sbjct: 243 EFIIDNPEIISYGIDGGDLEGDYL----DDGYIDIKYKNQIEKVKFALLGDFNLYNTLGA 298 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G+ + IGI +L+ + + PGRFE + + ++ VDYAHT ++L ++ R Sbjct: 299 IGIVLKIGISMEEILKRVSTIKAAPGRFEALDC-GQDYKVIVDYAHTPDALVNVIVAARN 357 Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 I +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I ++ G Sbjct: 358 IKNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKGFI 417 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI+ AI + K D++++ GKGHET HI+ G KK D Sbjct: 418 KSDDYFFEPDREKAIKLAINIAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus pumilus SAFR-032] Length = 493 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 168/500 (33%), Positives = 250/500 (50%), Gaps = 57/500 (11%) Query: 1 MKLQDLIY---KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L+ + ELIN+ I + DSR ++ G +FV I G DGH Sbjct: 3 MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKEGSLFVCIKGYTVDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115 + +A+ GA AIV ++ D P+++V ++++ L+ A Y + H Sbjct: 54 DYAEKAVKSGAAAIVAEHPLNITD--------VPVIIVKHSQRALARIADAFYEQPTHKL 105 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 N++ +TGT+GK+S ++Q+ +++ + IG ++ D + TTP + L K Sbjct: 106 NLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + Q V +E SSH L R+ G FTNL +DH+DYH T + Y +AK LF Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225 Query: 235 EELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 +L K AI+ ADD S K V++ + K + K Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVT---AAEVMTYALEQKADVMAK-------- 274 Query: 290 QVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + I +G FD + P L G+F VYN L A + I G+ ++ +E+L Sbjct: 275 NIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELE 334 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GRFE V + + + VDYAHT +SLE +L R +T G+I V GCGGDRD+ KRP Sbjct: 335 GVKGRFELVNCD-QDFPVIVDYAHTPDSLENVLTTCRELTEGKIFCVIGCGGDRDKTKRP 393 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455 M +IA+ AD + T DNPRSEDP I ++ +G+P F+ NR +AI AI Sbjct: 394 QMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFV---NRKQAIFFAIAN 450 Query: 456 LNKQDVLVVAGKGHETVHIV 475 K D +++AGKGHET I+ Sbjct: 451 AKKGDTVLIAGKGHETYQII 470 >gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 488 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 257/485 (52%), Gaps = 42/485 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 ELI L ++ R+ I + DSR ++ G++FV I G DGH FIP+AI +G+ + Sbjct: 7 ELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSRVV 66 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128 VV + ++ V NTR L++ A+R YG +P ++ + GT+GK++ Sbjct: 67 VVEK-------DVKTAKDVTVIKVPNTRYALAVLANRFYG-YPSKKLQVVGIAGTNGKTT 118 Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ + +++G G + + TTP + L L+ L ++ +V + Sbjct: 119 TTYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVM 178 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E S+H R+ G + G FTN+ RDH+D+H+T + Y A+++ F L A+I Sbjct: 179 EVSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVIN 238 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-- 305 DD Y++ ++K N +L+ G K ++ + +S G F+ + P Sbjct: 239 IDDPYAEHIIK---NTRTEILTYGINDKNADIRAF-------DIKVSKTGSRFNVITPLG 288 Query: 306 -------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 LPG + VYNAL A G+ I+ G++ + E + VPGRFE + + + Sbjct: 289 ETVFYLRLPGRYNVYNALAAVGVGISEGLNLNEIREAIAHAS-VPGRFERIDC-GQSFDV 346 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++L+ L+ R ++ GRIIVVFGCG D+D +RP+MG +A ++DIAI+T D Sbjct: 347 IVDYAHTPDALQKALETARGLSEGRIIVVFGCGDDKD--RRPLMGVVAARMSDIAILTSD 404 Query: 419 NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 N R+E+P +I ++I GI ++ +R EAI A+EM + D++++AGKGHE Sbjct: 405 NSRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEEY 464 Query: 473 HIVTN 477 I+ + Sbjct: 465 QIIKD 469 >gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 252/479 (52%), Gaps = 16/479 (3%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ Q+ + P ++ E+ DSR ++ G +FVA+ G++ DG +IPQAIA+GA A++ Sbjct: 7 LLGQVELAP----NIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLA 62 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVAS 131 + + Q S I PI+ LS A Y H ++ VTGT+GK++++ Sbjct: 63 ETEDAQQHLSTKIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQ 122 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q G S +G + ++ TT S + + +L+ +G ++E S Sbjct: 123 LLAQWTTLLGHRSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVS 182 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL QHR++ + FTNL RDH+DYHQ+ + Y AK RLF EL + II ADD Sbjct: 183 SHGLVQHRVEALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQ--IINADD 240 Query: 251 AYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + + ++ NA C+ +Q +++ + ++ + L Sbjct: 241 SVGQTWLQEQPNAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALI 300 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+F V N L+ +++G D +++ + +L V GR E + +++ I VDYAHT + Sbjct: 301 GQFNVSNLLLVFATLLSLGYDIEKLMKTVPQLTGVCGRMERLSASNQPTAI-VDYAHTPD 359 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L+ R G++ VFGCGGDRD+GKRPIM KIA AD IVTDDNPR+E + Sbjct: 360 ALEKALQAARLHCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQ 419 Query: 428 IRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I +I+ G P +E + R +AI A++ + DV+++AGKGHE I+ ++ S Sbjct: 420 IVQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKGHEDYQIIGTQKQHFS 478 >gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium periodonticum ATCC 33693] Length = 485 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 247/470 (52%), Gaps = 34/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 19 RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139 +++D R L AS Y + P+ I+ VTGT+GK+S ++++ R Sbjct: 72 HKVSYVLIDEIRHKLGYLASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G ++IG F N TTP + L K + + +V +E SSH L+ R+ Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + FTNL +DH+DYH T + YF AK +LF +L + ++ DD Y K++ Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDTNNSVFNIDDKYGKKLYDE 243 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++S G G + + + + + I + K F L G+F +YN L A Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAV 299 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + + +GI +LE + + PGRFE + + ++ VDYAHT ++L ++ R I Sbjct: 300 AIAVKMGIKWEDILERISNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358 Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 +G RII +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++ G Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTGFAK 418 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 419 NDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Parabacteroides distasonis ATCC 8503] Length = 486 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 171/513 (33%), Positives = 270/513 (52%), Gaps = 52/513 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118 + AI +GA AIV ++ + + +VV ++ + L L SR YG ++ Sbjct: 53 MDSAIEKGAVAIVC------EETPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLML 106 Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 107 VGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSL 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 164 MARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKF 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIHN 287 F++ LP + A+ ADD S VM + A S+ ++GK + H + I N Sbjct: 224 FDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLIIN 281 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 ++V + G+ F YN L G +++G D VL L L V GRFE Sbjct: 282 GREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE 330 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKI 405 + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 331 TI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKE 389 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQD 460 A+ L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K D Sbjct: 390 AVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGD 449 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V++VAGKGHE + G K+ D + +REI Sbjct: 450 VILVAGKGHEDYQEI-KGVKQHFDDREKLREIF 481 >gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Riesia pediculicola USDA] Length = 504 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 165/472 (34%), Positives = 255/472 (54%), Gaps = 29/472 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIR 87 K E+ DSR I+ G IF+AIVG+++DG +I AI++GA AI+ S++ + +D Sbjct: 22 KFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGASAIIAESNSLTKEDEFIKFL 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + PI+ V N RK + F+ +LYG ++ VTGT+GK++V+ V Q+ + G S Sbjct: 82 NQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNGKTTVSHIVAQLAKLIGQKSA 141 Query: 146 QIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G I + LTT S + L + V V++E SSHGLDQ R + Sbjct: 142 VMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVKIVAMEVSSHGLDQGRTCSLS 201 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTN+ RDH+DYH + Y +K +LF E K + + DD + +K N+ Sbjct: 202 FSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNR--VFFIDDPVGSKWIKDFPNS 259 Query: 264 GCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 C V S+ ++ K ++ K+ ++N+ + + + + + GEF V N + Sbjct: 260 -CAV-SINHKNKLNLLNRPILYATKIEYLYNQTIIRFNSDWGNGEIRTSFLGEFNVANFM 317 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A + IG L++++ +++ V GR + V + R+ +DYAH S+SL+ L +I Sbjct: 318 LAIASLLMIGYPIHLLIKNSKRVSPVIGRMQLV--SHYNPRVIIDYAHNSDSLKQCLISI 375 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R G+I VFGCGG RD+GKR IMG+IA +D I+TDDNPR EDP+KI EI+ G Sbjct: 376 RKHFGGKIWCVFGCGGSRDKGKRAIMGRIAEKYSDFVIITDDNPRFEDPKKIFKEILRGC 435 Query: 436 -----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I F E R AIR +I D +++AGKGHE IV G++K+ Sbjct: 436 THLESIRYFPE---RKYAIRYSISRAKPNDTVLIAGKGHEEKQIV--GDRKI 482 >gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Reinekea sp. MED297] Length = 484 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/454 (35%), Positives = 231/454 (50%), Gaps = 25/454 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +++ DSR + G +F+A+ G DGH FI AI +GA AI+ +Q + Sbjct: 18 KAVDITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-----DT 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+ VVD R L A R YG H ++ +TGT+GK+S +V Q G Sbjct: 73 QVPVCVVDGLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGI 132 Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T+ + Q D TTP I L + LS SQG ++E SSHGLDQ R+DG+ Sbjct: 133 IG-TNGQGLWGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL RDH+DYH + +AYF AK RL P A++ DD + ++ +R Sbjct: 192 STAVFTNLSRDHLDYHHSMEAYFEAKWRLMR--WPGLRNAVVNLDDEWVQKNRERIMAER 249 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ L+ C H + D D L G F + NAL A + + Sbjct: 250 VWTYALETDADVQALEVNC--HEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVML 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ + + V GR E + ++ + VDYAHT ++LE L++ R +GR Sbjct: 308 AEGVPVNTAARVISNCNPVKGRMETL-RSAYSPTVVVDYAHTPDALEKALQSCREHVNGR 366 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 ++V+FGCGGDRD GKRP M ++A AD+ +VTDDNPR+E +I A+I GF + Sbjct: 367 LVVIFGCGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQ---GFSTEA 423 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHET 471 N R EAI + + DV+++AGKGHE+ Sbjct: 424 NYRVIPDRREAIVQTLNDSERSDVVLIAGKGHES 457 >gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia felis URRWXCal2] Length = 530 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 172/531 (32%), Positives = 266/531 (50%), Gaps = 75/531 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ + +S +S+ ++ IF AI G DG+ FI + + Q A A+V++ D Sbjct: 9 FQKHNVKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQ-AVALVIT------DNKK 61 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ V++ + L Y K P+N++AVTGT+GKSSV S++ Q G + Sbjct: 62 NTIIDDKVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKA 121 Query: 145 FQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T + F DN LTT + K L+ + +++ EASSHGL+Q R Sbjct: 122 ASIG-TIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGLNQAR 180 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----------------------- 235 L IK+ FT+ +DH+DYH T++ Y AK++LF Sbjct: 181 LGEIKVNTACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAY 240 Query: 236 --------------------------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 E L + AI+ +D A + V N + ++ Sbjct: 241 ILVREDASTGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFIT 300 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 VG +G + + K+ Q + ++ F + G FQ N L+AA IG D Sbjct: 301 VGKKGD-VQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDF 359 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV 387 ++E L ++ V GR E +G + I+VDY+HT ++LE L ++ + R+ VV Sbjct: 360 NKIIEILTQVKPVKGRMERIGNTN----IFVDYSHTPDALEKALTELKNVKLRDSRLNVV 415 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNR 445 FGCGG+RD+ KR +MG+IA LAD I+TDDNPR EDP+ IRAEII GI + E NR Sbjct: 416 FGCGGNRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIANR 475 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILGL 495 EAI+ I L + D+L++AGKGHE I+ G+KK+ D +I+R+++ L Sbjct: 476 EEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFDDAEIVRKLMSL 524 >gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 483 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 263/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG ++ +AI GA A+V ++++ Sbjct: 22 ISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVTDR--EIKEYPGI---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L +R+D + Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+HQ + Y K +LF+ +S ++I DD YS +++ + Sbjct: 192 FDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFK---MAKSASVINIDDKYSSMMIESSK-- 246 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 247 -AKVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGIFSVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + + +DYAHT + ++ I++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFELVET-GKDFYVIIDYAHTPDGIQNIMEALKEYKTG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG++A AD I+T DNPRSEDP +I ++I GI Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAI A+ K DV+++AGKGHET I+ G+K + D +I++EIL Sbjct: 424 YVVIENRKEAISYALTNAQKDDVIILAGKGHETYQII--GDKVIHFDEREIVKEIL 477 >gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 500 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 246/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ GV ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Chlorobium tepidum TLS] gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium tepidum TLS] Length = 508 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 158/455 (34%), Positives = 231/455 (50%), Gaps = 20/455 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR + G +FVA+ G DGH FI AI GA A+ + ++ A + Sbjct: 36 ITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGAVAV------ACEELPAAYSDS 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 LVV + RK L+ + YG + ++ VTGT+GK++ A V + SG+++ I Sbjct: 90 VTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYI 149 Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + TTP P L + G +E SSH L R+ G+ A Sbjct: 150 GTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRA 209 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +H+D+H+T + Y AK LF++L E A+I ADD ++ + R Sbjct: 210 AVFTNLTPEHLDFHETMEEYAEAKRLLFDQL-NAEGFAVINADDPRAEFMAARLAPERVF 268 Query: 267 VLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 S G + H + + ++ +G+ PLPG + V N L A Sbjct: 269 CCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAFT 328 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + +GID A L L + GR E + + R VDYAHT ++L+ L+ +R +T Sbjct: 329 VGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAVVDYAHTPDALQKALEALRAVT 388 Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 ++ VVFGCGG+RD+ KRP MG+IA +LAD I+T DNPR E+PE I E+ G+ G Sbjct: 389 PADAKLAVVFGCGGNRDRQKRPEMGRIAAELADRVILTSDNPRDENPEAILDEVEAGMAG 448 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + +R EAIR A+E L D+L+VAGKGHE Sbjct: 449 RVHLRIADRAEAIRRAVEQLGAGDILLVAGKGHEA 483 >gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans C54] Length = 954 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 245/473 (51%), Gaps = 37/473 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG L+I +A+A GA A++ + + +A +TP+L V Sbjct: 34 DSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTPMLPV 93 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 R L YG+ P + LAV +G + S VQ I G + G T+ + Sbjct: 94 TGLRALLGELGDTWYGR-PSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGTLGA 152 Query: 156 FAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 D + LTTP + + + L+ + G V++EASS G++Q R+DG+++ ++T Sbjct: 153 VLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALAAYT 212 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+DYH T + Y AK LF P S A++ ADD + ++ + A V+ Sbjct: 213 NLTRDHLDYHGTMERYEAAKASLFR--WPGLSAAVVNADDEAGRRLIA-SLPADLSVM-- 267 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGL 321 GY + A + + + +G+ F + P L G V N L+ AG+ Sbjct: 268 GY--SLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGV 325 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGR---IYVDYAHTSNSLEMIL 373 +G+ A + L V GR + V T + GR + VDY+HT +SL L Sbjct: 326 LYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARAL 385 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +R + +GR++ VFGCGGDRD GKRP MG+IA +LAD +V+ DNPRSE P+ I A Sbjct: 386 MALRPVAQARAGRLVCVFGCGGDRDAGKRPEMGRIAAELADHVVVSSDNPRSESPDAIVA 445 Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +I+ GIP + + +R AI AI +DV+++AGKGHET + GEK Sbjct: 446 QILAGIPASVAVEVQVDRARAIMQAIWASAPEDVVLLAGKGHETYQEIA-GEK 497 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 166/393 (42%), Gaps = 30/393 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+D+R I AG +FVA+VG D H ++ QA +GA A VV+ A S+ Sbjct: 515 VKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACAAVVAHAVP--------ESS 566 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LV+ +TR L + + ++AVTG++GK++ + + L+ ++ Sbjct: 567 LPQLVLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAM-----LAGWRGEA 621 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +N + P + L + V +H + +L I + + Sbjct: 622 GRLATAGNLNNDIGVPLTVL------RLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVAL 675 Query: 210 -TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN R+H ++ T +A LP + A+ D+ Y+ + A A R L Sbjct: 676 VTNAQREHQEFMHTVEAVALENGAAIAA-LPADGVAVYPGDEPYAAIWDRLA--APRRAL 732 Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G Q G ++ +++ A + + + D P+PG + NAL A IA G Sbjct: 733 RFGLQPGLDVYAEQILADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGA 792 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 + + L V GR ++ + G + +D + +N S+ + + I R++ Sbjct: 793 PLDVAVRALAGFSPVAGRMQYKKLSD--GTLLIDDTYNANPDSVRAAIDVLARIAGTRVL 850 Query: 386 VVFGCG--GDRDQGKRPIMGKIALDLADIAIVT 416 V+ G GD +G A +L A++T Sbjct: 851 VLGDMGEVGDNGPAMHEEVGNYARELGLDALIT 883 >gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_19] Length = 486 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 174/514 (33%), Positives = 269/514 (52%), Gaps = 54/514 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + AI +GA AIV A S + +VV ++ + L L SR YG P Sbjct: 53 MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286 F++ LP + A+ ADD S VM + A S+ ++GK + H + I Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 N ++V + G+ F YN L G +++G D VL L L V GRF Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404 E + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG----NRIEAIRTAIEMLNKQ 459 A+ L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K Sbjct: 389 EAVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKG 448 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE + G K D + +REI Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481 >gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Desulfovibrio sp. 3_1_syn3] Length = 488 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 259/479 (54%), Gaps = 28/479 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSN 89 EV SDSR + G IFVA+ G EDG FIP A+ GA +V +D A++R+ Sbjct: 18 EVRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPG-GPEDAALQASVRAE 76 Query: 90 TPILVV-DNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +V ++ R+ L A + G IL VTGT+GK++ ++++ +G + Sbjct: 77 GCRVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAG---HK 133 Query: 147 IGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+S ++ LTTP P+ + L+ + + GV +E SSH +DQ R+ G+ Sbjct: 134 VGVLGTVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCGV 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +FTNL +DH+D+H+ ++YF K RLF EL E + ADD + + +++ Sbjct: 194 PFAGAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCP- 252 Query: 263 AGCRVLSVGYQ---GKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R LS G Q + HL + + A ++ + +EG+ ++ PL G F N L Sbjct: 253 ---RALSFGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLT 309 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 L + G+D + LE V GR E V NS+G ++VDYAHT ++L +LK +R Sbjct: 310 VQALALETGLDPGQ-FKALESFTGVCGRLERV-ENSQGLNVFVDYAHTPDALVNVLKALR 367 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 RII VFGCGG+RD+ KRP+MG+ AD+A++T DNPR E+PE I +++ G+ Sbjct: 368 GAGFKRIITVFGCGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLPGLK 427 Query: 438 GFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E + +R A A++ML K D L++AGKGHE I+ G K D +++RE+L Sbjct: 428 EAREVLVEVDRHAATARALDMLGKDDALLIAGKGHEDYQII-QGVKHHYSDQEVVRELL 485 >gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 501 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 241/469 (51%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ ++ V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + NA + KF+ + V ++T + L G F V Sbjct: 256 WLAKLPNAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E+V + + VDYAHT ++LE Sbjct: 316 NLLTALASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I+ G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILKGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium colombiense DSM 12261] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 238/462 (51%), Gaps = 28/462 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V + S + +F I G K DGH F A+ +GA ++ A LQ P Sbjct: 32 DVFNKSHQCEENSLFCCIPGEKHDGHSFASDAVQRGAAVLLCQHALPLQ---------VP 82 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V+N+R + A+ +YG + + +TGT+GK++ + ++ I + +G +G Sbjct: 83 QIIVENSRWAMGFAAAAVYGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGT 142 Query: 150 -TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 Q+ TTP + + ++ + G T V +EASSHG +Q RL+G Sbjct: 143 IVYADGEKEQEADRTTPESCDVQRLIARMKRNGCTSVIMEASSHGANQGRLNGCLFQGMV 202 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +H+DYH+ + YF AK +LFEE + + + +DD Y + +++ G + L Sbjct: 203 FTNLTPEHLDYHKDMEHYFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIY---GKKCL 259 Query: 269 SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324 S G H L+ ++ + + D D PL G F +YNAL A +C Sbjct: 260 SFGLDSTRHHDVQLQNFYMTLSELSMKVQFFNSDPIDITLPLTGRFNIYNALGAMAICYK 319 Query: 325 IGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ ++ + LE + VPGR E + N G VDYAHT ++LE +L +R + G+ Sbjct: 320 MGVAPLVIKKGLESMPQVPGRLEKYFFENEVCG--VVDYAHTPDALENVLSALREVCHGK 377 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 II VFG GG+R Q RP++G++A LADI IVT DN RSEDP KI I GI +E Sbjct: 378 IISVFGHGGERYQANRPLLGQVAARLADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAP 437 Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +R EA+RTA+ M DV+VV GKG E ++ N + Sbjct: 438 PHYRILDRNEAVRTALSMAKPGDVVVVTGKGPERFIVMDNNK 479 >gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella bryantii B14] Length = 487 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 175/510 (34%), Positives = 268/510 (52%), Gaps = 46/510 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L+Y I P+Q E+++ V+ DSR I+ G +F+A+ G + DGH Sbjct: 1 MKLQELLY----------DIKPIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGH 50 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115 +I +AI GA AI+ L+D + V++T + A+ YG H Sbjct: 51 AYIAKAIELGATAIL------LEDMPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHL 104 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLA 171 ++ VTGT+GK+++A+ + + +R G + G ST+ ++ +D + TTP PI L Sbjct: 105 ILVGVTGTNGKTTIATLLYNMFRRMG---HKCGLLSTVCNYIEDKAVPADHTTPDPIELN 161 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 LS + G + +E SSH + Q R+ G+K FTNL RDH+DYH+T + Y NAK Sbjct: 162 ALLSEMVKAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK 221 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F+ L K++ AI ADD + +M + A + S+ F K+ H + Sbjct: 222 AFFDG-LSKDAFAITNADDK-NGMIMVQNTKATVKTYSIRTLADF--SAKILECH-FDGM 276 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVG 350 + V GK+ + F G+F V N L G + +G D VL L LH V GR + F Sbjct: 277 ELEVNGKEVNVQF--IGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFHS 334 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALD 408 N G VDYAHT ++LE +L I + +G+ +I V G GG+RD+GKRP+M + A+ Sbjct: 335 PN--GYTAIVDYAHTPDALENVLNAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVK 392 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463 +D I+T DNPR E+P+ I +++ G+ I +R E IRTA + K DV++ Sbjct: 393 QSDKVIITSDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVIL 452 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKGHE + G K D ++++EI Sbjct: 453 IAGKGHENYQDI-KGVKHHFDDKEVLQEIF 481 >gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Grimontia hollisae CIP 101886] Length = 495 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 171/475 (36%), Positives = 250/475 (52%), Gaps = 16/475 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ D+R I G +FVA+ G+ D FIP AI GA A++ F T++ Sbjct: 22 ITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAIEAGAAAVIADDGDIHGQFDVTMQGG 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + ++ VTGT+GK++V+ V Q G + + Sbjct: 82 VPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGVTGTNGKTTVSQLVAQWIDLLGGKAAVM 141 Query: 148 GPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T A L TT S + + + L+ + QG THV++E SSHGL Q R+ + A Sbjct: 142 GTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQGATHVAMEVSSHGLVQDRVKAVAFDA 201 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T +AY AK+RLF SP ++I ADD + A Sbjct: 202 AIFTNLSRDHLDYHGTMEAYAEAKLRLFTHY---GSPVSVINADDPVGMRWLGSMPEAVA 258 Query: 266 RVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +S +QG+ + L V + +T + +F PL GEF V N LV+ Sbjct: 259 VSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDSSWGEGEFTTPLVGEFNVMNLLVSLAT 318 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A+G + A +L +L V GR E + VDYAHT ++LE L +R Sbjct: 319 LLALGYEKAALLASATQLQAVVGRMEVFHRPDKP-MCVVDYAHTPDALEKALHALRRHCD 377 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 G++ +FGCGGDRD GKRP+M IA LADI I+TDDNPRSE P+ I A+++ G+ Sbjct: 378 GKLWCIFGCGGDRDIGKRPMMADIAEKLADIVILTDDNPRSESPQAIVADMLRGMTDPDK 437 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R +A A+E ++QDV+++AGKGHE ++ +G S D D +R +L Sbjct: 438 AIILHDRAQACSYALENASEQDVILIAGKGHEDYQVLASGTVHYS-DRDTVRRLL 491 >gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 528 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 170/531 (32%), Positives = 268/531 (50%), Gaps = 80/531 (15%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ + +S +S+ ++ +F AI G DG+ FI A+ Q A ++ + ++ Sbjct: 9 FQQHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNI----- 63 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ V++ + L Y K P+N+ AVTGT+GKSSV S++ Q G + Sbjct: 64 ---VIDKVIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKT 120 Query: 145 FQIGPTSTISS--FAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 IG TI F DN LTT + K L+ G+ +++ EASSHGLDQ Sbjct: 121 ASIG---TIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQ 177 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----------EEL--------- 237 RL IK+ FT+ +DH+DYH T++ Y AK++LF EE Sbjct: 178 ARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTA 237 Query: 238 ----------------LPKESP--------------AIIYADDAYSKEVMKRAHNAGCRV 267 LP E+ AI+ +D + V HN + Sbjct: 238 AYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKF 297 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++VG +G + + ++ + Q + + ++++F P+ G FQ N L+AA G Sbjct: 298 ITVGKKGD-LEITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGF 356 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385 D ++E L ++ V GR E + + I+VDY+HT ++LE L ++ I ++ Sbjct: 357 DFNKIIEILTQVKPVKGRMERIDNTN----IFVDYSHTPDALEKALTELKNIKLRDSKLS 412 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 VVFGCGG+RD+ KR IMG+IA LAD I+TDDNPR+E+P+ IR EII GI + E Sbjct: 413 VVFGCGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADYTEIA 472 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493 NR EAI+ I L + D+L++AGKGHE I+ G+KK+ D +++R+ + Sbjct: 473 NREEAIKYGINNLKQDDILLIAGKGHENYQII--GDKKLPFDDAEVVRKCI 521 >gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + QD TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 500 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 246/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ GV ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. 2_1_7] Length = 486 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 174/514 (33%), Positives = 269/514 (52%), Gaps = 54/514 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + AI +GA AIV A S + +VV ++ + L L SR YG P Sbjct: 53 MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286 F++ LP + A+ ADD S VM + A S+ ++GK + H + I Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 N ++V + G+ F YN L G +++G D VL L L V GRF Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404 E + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459 A+ L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K Sbjct: 389 EAVKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKG 448 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE + G K D + +REI Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481 >gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 487 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 166/499 (33%), Positives = 255/499 (51%), Gaps = 49/499 (9%) Query: 10 DFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D EL+ L F +Q E+ I+ + DSR ++ G +F+ I G DGH F A+ +G Sbjct: 2 DLRELLTHLHDF-VQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 60 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 A AI+ ++ ++S T++ +++ A Y + + +++ VTGT+G Sbjct: 61 AVAILAEKPVDVEVPVVRVKS---------TKRAMAVLADAFYNQPTQKMHLIGVTGTNG 111 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K+++ ++ I + + IG I + D + TTP + L K + + V Sbjct: 112 KTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEV 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------- 237 +E SSH LD R+ G F+NL +DH+DYH T + Y AK LF +L Sbjct: 172 AMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHN 231 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 PK A++ ADDA ++E +K N V++ G + + I + I+ G Sbjct: 232 RPK--FAVLNADDAATEEYIK---NTAATVITYG-------IDRDSDI-RATNIQITNSG 278 Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 FD P L G+F VYN L A C+ GI ++++E ++ L V GRFE Sbjct: 279 TTFDLTTPTETVRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEV 338 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VDYAHT +SLE +LK ++ I V+ GCGGDRD+ KRPIM +IA + Sbjct: 339 VDA-EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAE 397 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + AI+T DNPRSEDP I ++ G+ ++ +R EAIR A+E + DV+V+AG Sbjct: 398 YSTQAILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAG 457 Query: 467 KGHETVHIVTNGEKKMSVD 485 KGHET I+ G+K D Sbjct: 458 KGHETYQII--GKKVFDFD 474 >gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis 3_1_12] gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12] Length = 485 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 261/501 (52%), Gaps = 46/501 (9%) Query: 19 SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 SI P++ ++ +I V DSR + +G +F+A+ G + DGH +IP AI +GA AI+ Sbjct: 9 SIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKGAIAILC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 ++ A + + V ++ + A+ YG ++ VTGT+GK+++A+ + Sbjct: 67 ----EELPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP PI L + L ++ +G + +E Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F+E LPK S ++ D Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKSSFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ + + R LS ++GK + H + + N ++ + Sbjct: 239 DKNGLVMTQNTKSKVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVQ--------- 288 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G F N L G + +G VL L LH V GRF+ + + +G VDYA Sbjct: 289 --FIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR Sbjct: 346 HTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 E+P+ I +++ G+ +K +R EAIRTA + K DV++VAGKGHE + Sbjct: 406 FEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI- 464 Query: 477 NGEKKMSVDCDIIREILGLIL 497 G K D ++++EI L + Sbjct: 465 KGVKHHFDDKEVLKEIFSLTI 485 >gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697] gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 482 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/497 (32%), Positives = 260/497 (52%), Gaps = 46/497 (9%) Query: 19 SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 +I P+Q E+ I V+ DSR + AG +F+A+ G + DGH +IP AI +GA A++ Sbjct: 9 TIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKGAIAVLC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +D N + V ++ + A+ YG ++ VTGT+GK+++A+ + Sbjct: 67 ----EDMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP PI L + L ++ G + +E Sbjct: 123 YNTFRHFG---YKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + ++ D Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ R + R LS ++GK + H + + N +++ + GK Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKILESHFEGMLLDFNNRELAVRFIGK----- 292 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F YN L G + +G VL L LH V GRF+ + + +G VDYA Sbjct: 293 ------FNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSI-RSPKGITAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+T DNPR Sbjct: 346 HTPDALVNVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 E+P+ I +++ G+ I +R EAI+TA + DV+++AGKGHE + Sbjct: 406 FEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKGHENYQEI- 464 Query: 477 NGEKKMSVDCDIIREIL 493 G K D +II+EI+ Sbjct: 465 KGVKHHFDDKEIIKEIM 481 >gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1] Length = 490 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 262/504 (51%), Gaps = 49/504 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L+ ++ L+ P I + DSR ++ G +F+ I G DGH F Sbjct: 1 MKLQTLL-----SYLHDLT--PYVGENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 QA+ GA AI+ + + P++VV ++R+ +++ A YG+ H +++ Sbjct: 54 KQAVENGAVAIIAERPLDV---------DVPVIVVRDSRRAMAVLADAFYGQPTHRLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++QI +++ + IG I A + TTP + L + + Sbjct: 105 GVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVHIKIGDDAYPTQNTTPESLLLQRTFKQM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + +GV +E SSH L R+ G FTNL +DH+DYH T + Y NAK LF +L Sbjct: 165 ADEGVDVAIMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224 Query: 238 ---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 E P A++ DD S+ H V++ G + + K ++ Sbjct: 225 GNRYDHERPKFAVLNNDDPASQYY---KHMTAATVITYGTKTDSDIMAK--------RID 273 Query: 293 ISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 I G FD + P L G F VYN L A C+ GI +++E +E++ V Sbjct: 274 IVPNGMAFDLITPHGTARVKTKLIGLFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVA 333 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GRFE V + + VDYAHT +SLE +LK + + VV GCGGDRD+ KRP+M Sbjct: 334 GRFETVD-EGQDFTVIVDYAHTPDSLENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMA 392 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDV 461 K+A+ AD+AI T DNPRSEDPE+I ++ G+PG ++ +R EAI AIE + D+ Sbjct: 393 KVAVQYADVAIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDI 452 Query: 462 LVVAGKGHETVHIVTNGEKKMSVD 485 +++AGKGHET I+ G++ ++ D Sbjct: 453 VLIAGKGHETYQII--GDRVIAFD 474 >gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella bivia JCVIHMP010] Length = 485 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 256/475 (53%), Gaps = 32/475 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR I+AG +FVA+ G + DGH FI +AI GA+A++V +D ++ + Sbjct: 26 INIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELGAKAVLV------EDMPTDLKEDVTY 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V +T + A+ YG + + + VTGT+GK+++A+ + + ++ G +++G Sbjct: 80 VQVASTETEVGKIATIFYGNPTKKLKLVGVTGTNGKTTIATLLYNMFRKFG---YKVGLI 136 Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 ST+ ++ D TTP PI L + L + + G + +E SSH + QHR+ G+ Sbjct: 137 STVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFMECSSHAIHQHRIGGLHFEG 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL RDH+DYH+T + Y NAK ++F + L K + AI ADD K M N Sbjct: 197 GVFTNLTRDHLDYHKTFENYRNAK-KMFFDSLSKNAFAITNADD---KNGMIMVQNCKAN 252 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + Q K+ H + + + V+GK+ F G+F V N L G I +G Sbjct: 253 IKTYSMQRMADFRAKIIECH-FEGMYLEVDGKEVGVQF--IGKFNVSNLLAVYGTAIMLG 309 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGR 383 +L L L V GR + V + G VDYAHT ++LE +L I + +G+ Sbjct: 310 KSQDDILLALSTLKSVNGRLDPVHS-PEGFTAIVDYAHTPDALENVLGAIHDVLEGKNGK 368 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 +I V G GG+RD+GKRP+M + A+ +D I+T DNPR EDP+ I +++ G+ K Sbjct: 369 VITVCGAGGNRDKGKRPLMAQEAVKQSDTVILTSDNPRFEDPQAIIDDMVAGLDANQRKK 428 Query: 444 -----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R EA+RTA M K DV++VAGKGHE + G K D +++REI Sbjct: 429 VLTIVDRREAMRTAAMMAKKGDVILVAGKGHEDYQDI-QGVKHHFDDHEVLREIF 482 >gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Parabacteroides sp. D13] Length = 486 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + AI +GA AIV A S + +VV ++ + L L SR YG P Sbjct: 53 MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286 F++ LP + A+ ADD S VM + A S+ ++GK + H + I Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 N ++V + G+ F YN L G +++G D VL L L V GRF Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404 E + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKG----NRIEAIRTAIEMLNKQ 459 A L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKG 448 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE + G K D + +REI Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481 >gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 483 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 263/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V DSR + ++F+AI G K DG ++ +AI GA A+V ++++ Sbjct: 22 ISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNGAVAVVTDR--EIKEYPGI---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L +R+D + Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALNRVDECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+HQ + Y K +LF+ +S ++I DD YS +++ + Sbjct: 192 FDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFK---MAKSASVINIDDKYSSMMIESSK-- 246 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 247 -AKVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIEDKKEEISLKIPGIFSVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + + +DYAHT + ++ I++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFELVET-GKDFYVIIDYAHTPDGIQNIMEALKEYKTG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG++A AD I+T DNPRSEDP +I ++I GI Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEDPREIISQIEEGIKKTNCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAI A+ K DV+++AGKGHET I+ G+K + D +I++EIL Sbjct: 424 YVVIENRKEAISYALTNAQKDDVIILAGKGHETYQII--GDKVIHFDEREIVKEIL 477 >gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteria bacterium BAL38] Length = 477 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 255/477 (53%), Gaps = 31/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+++ DSR I+ +FVAI G +GH +I +A++ GA AI+ ++ + I + Sbjct: 14 ISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIIC------EELPSNIVNG 67 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +T + L+ ++ + NI + VTGT+GK+++AS + Q+ +++G +++ Sbjct: 68 VTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAG---YKV 124 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ + TTP + L L + G +E SSHG+ Q R + ++ Sbjct: 125 GLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRTEALQ 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + G FTNL DH+DYH T Y + K F+ L K++ AI DD +++ N Sbjct: 185 FVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGL-SKDAFAITNIDDKNGAIMLQ---NT 240 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + LS + + I Q + ++ D + L G F YN L G+ + Sbjct: 241 KAKKLSYALKS---YADYKAQILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVAV 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382 +GID L L +L V GRF+F+ ++ + I VDYAHT ++LE +LK I I + Sbjct: 298 ELGIDKMEALRLLSELESVSGRFQFIVSDLKITAI-VDYAHTPDALENVLKTIEDIRTKN 356 Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 ++I V GCGGDRD+ KRPIM IA L+D AI T DNPR+E+PE I E+ G+ P Sbjct: 357 EQLITVVGCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETIIEEMEKGVEPQNF 416 Query: 441 EKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +K +R +AI+TA ++ N D++++AGKGHET + NG + D II E+L Sbjct: 417 KKTVSILDRKQAIKTACQLANPNDIILIAGKGHETYQEI-NGLRHDFDDLKIITELL 472 >gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus pleuropneumoniae L20] gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 500 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [unidentified eubacterium SCB49] Length = 487 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 263/478 (55%), Gaps = 33/478 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + +FVAI G + DGH +I +A+ QGA AI+ + + I + Sbjct: 24 IRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAIAIICET------IPSEIING 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V+++++ L++ A YG I + VTGT+GK+++A+ + + +G ++ Sbjct: 78 ITYIQVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIATLLYNLFMAAG---YET 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ + TTP + + + L + GV++ +E SSHG+ Q R +G+ Sbjct: 135 GLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVDAGVSYCFMEVSSHGIHQKRTEGLT 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH+ + Y + K + F++L K + A++ ADD K M N Sbjct: 195 FAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQL-SKTAFALVNADD---KNGMVMLQNT 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + V Y K + K + N+ Q + + ++G++ L G F YN L Sbjct: 251 SAK--KVTYALKSMADHKAQILENQLQGLLLKLDGQEL--WVKLIGNFNAYNVLAIYATA 306 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+++ L+ + L V GRF++ +N++ + VDYAHT ++L+ +L+ I TI +G Sbjct: 307 ELLGLETIETLQLISTLESVDGRFQYFISNTKVTAV-VDYAHTPDALKNVLETINTIRTG 365 Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439 ++I V GCGGDRD KRPIMGKIA L+ AI T DNPR+E PE I +I G+ P Sbjct: 366 NEQLITVVGCGGDRDVTKRPIMGKIAAQLSTKAIFTSDNPRTEQPEAIIEQIEAGVEPID 425 Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +K +R +AI+TA ++ N+ D++++AGKGHET V GE+ D I++++L Sbjct: 426 FKKTLSITDRKQAIKTACQLANENDIILIAGKGHETYQEV-QGERTDFDDYKIVKQLL 482 >gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium tuberculostearicum SK141] Length = 511 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 170/469 (36%), Positives = 242/469 (51%), Gaps = 33/469 (7%) Query: 32 EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 EVS+ DS + G +F A+ G + G F A V++ A L D + Sbjct: 23 EVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTKA----GAVLTDAAGL-DLLTKDQE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 PI+VV++ R L ++ +YG HP L V G +G S + ++ +G S Sbjct: 78 TRPIVVVEDIRAVLGPISAEIYG-HPTRDLTVIGVTGTSGKTTTSYLLEAGLLHAGHSVG 136 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T T I+ LTTP L + + + ++GVTHV +E SSH L+ R+ G + Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTRF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FTNL +DH+D+H T + YF AK +LF E A++ DD + + + A +AG Sbjct: 197 AVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSAG 255 Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V +V QG + + Q+V ++ +G DF F PLPGEF + NA +A G+ Sbjct: 256 HPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRLPLPGEFNIANACLALGM 315 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR-- 377 A+G D A L +EK+ VPGR E + RG VDYAH ++ +L +R Sbjct: 316 ATAVGEDPAEFLSGVEKV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLRGQ 371 Query: 378 -TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 T+GR+ +V G GGDRD KRPIMG A AD+ +VTDDNPRSEDP IRA ++ G Sbjct: 372 LEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGA 431 Query: 437 -----PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 G I E G+R AI ++ D ++V GKGHE +V NG+ Sbjct: 432 RDAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGK 479 >gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 511 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 170/469 (36%), Positives = 241/469 (51%), Gaps = 33/469 (7%) Query: 32 EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 EVS+ DS + G +F A+ G + G F A V++ A L D + Sbjct: 23 EVSACGLDSSRLPEGALFAALPGTRVHGAQFARDTKA----GAVLTDAAGL-DLLTEAQE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 PILVV++ R L ++ +YG HP L V G +G S + ++ +G S Sbjct: 78 TRPILVVEDIRAVLGPISAEIYG-HPTRELTVIGVTGTSGKTTTSYLLEAGLLHAGHSVG 136 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T T I+ LTTP L + + + ++GVTHV +E SSH L+ R+ G + Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVMEVSSHALELGRVRGTRF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FTNL +DH+D+H T + YF AK +LF E A++ DD + + + A +AG Sbjct: 197 AVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAER-AVLCIDDEWGERMRGVAKSAG 255 Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V +V QG + + Q+V + +G +F F PLPGEF + NA +A G+ Sbjct: 256 HEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRLPLPGEFNIANACLALGM 315 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379 A+G D A L +EK+ VPGR E + RG VDYAH ++ +L +R Sbjct: 316 ATAVGEDPAEFLSGVEKV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLRGQ 371 Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 T+GR+ +V G GGDRD KRPIMG A AD+ +VTDDNPRSEDP IRA ++ G Sbjct: 372 LEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPRSEDPATIRAAVVEGA 431 Query: 437 -----PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 G I E G+R AI ++ D ++V GKGHE +V NG+ Sbjct: 432 RDAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV-NGK 479 >gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria innocua FSL S4-378] Length = 491 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 236/467 (50%), Gaps = 41/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N+++ DSR +Q G +F+ I G DGH F +A+ GA AI+ + Sbjct: 22 EVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLGAVAIIAEKQLDV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L V ++++ +++ A YG + ++ +TGT+GK++V+ V+QI + +G + Sbjct: 73 SVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + GV+ +E SSH L Q R+ G Sbjct: 133 IGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVMEVSSHALVQGRVYGSDYD 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 F NL +DH+DYH T + Y AK LF +L L A++ ADD KE ++ Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKIAVLNADD---KESVRMQ 249 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 +++ G K A + + I+ G FD P + G F Sbjct: 250 TATAAHIITFGI--------KEPADFSASNIQITSHGSTFDLKTPVGDFSLKIKMIGNFS 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN L A A+ I + +E + V GRFE V + + VDY+HT +SL Sbjct: 302 VYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNA-GQDFPVIVDYSHTPDSLLN 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I T DNPRSEDP I + Sbjct: 361 VLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSEDPHAIIED 420 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G+PG ++ NR +AIR A+ M DV+++AGKGHE ++ Sbjct: 421 MTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGHEDYQVI 467 >gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_33B] Length = 486 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + AI +GA AIV A S + +VV ++ + L L SR YG P Sbjct: 53 MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286 F++ LP + A+ ADD S VM + A S+ ++GK + H + I Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 N ++V + G+ F YN L G +++G D VL L L V GRF Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404 E + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459 A L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKG 448 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE + G K D + +REI Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481 >gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor 202] Length = 500 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 178/500 (35%), Positives = 253/500 (50%), Gaps = 27/500 (5%) Query: 18 LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 LS FP W E K +N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ Sbjct: 5 LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64 Query: 75 SAYSLQ------DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 + +Q F+ + T +L V N K LS A YG E ++ +TGT+G Sbjct: 65 ADDDVQAVRLAEKFAKNHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNG 124 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ A Q G S +G + Q+ TT S I + + L+ G Sbjct: 125 KTTTAQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADF 184 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q+R + + FTNL RDH+DYH T + Y AK RLF EL K+ Sbjct: 185 CAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ-- 242 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFD 301 +I ADD +E + + A +Q + K A+ Q TI VE + + Sbjct: 243 VINADDEIGREWLAKLPEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGE 302 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRI 358 L G F V N L A +A+G D ++E L+ V GR E + + + Sbjct: 303 LKSRLIGAFNVSNLLTAFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMV 362 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++LE L R G + VFGCGGDRD GKRP+M +IA LAD IVTDD Sbjct: 363 IVDYAHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADKVIVTDD 422 Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+EDP+ I +I+ G P ++ + R AI AI +DV+++AGKGHE I+ Sbjct: 423 NPRTEDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII 482 Query: 476 TNGEKKMSV-DCDIIREILG 494 G KK D + ++ LG Sbjct: 483 --GTKKYHFSDQEWAKKFLG 500 >gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens harbinense YUAN-3] Length = 484 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 177/511 (34%), Positives = 278/511 (54%), Gaps = 54/511 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ +S E +I +++DSR G +FV I G + DGH F Sbjct: 1 MKLQNLL--------RDVSYTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFA 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A A G+ A++ +L+D A + P ++V +TR +L + +G+ E + + Sbjct: 53 ASAAAAGSPAVL-----ALRDTGAPV----PHILVKDTRLAYALCCANFFGRPAERLRMV 103 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKAL 174 VTGT+GK++ + +++I + +G S IG TI + A + LTTP P + L Sbjct: 104 GVTGTNGKTTTTTLLKEILEYNGHKSGLIG---TIVNMAGGKTLPSHLTTPEPYEFQQLL 160 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++ +G +E SSH L Q R+ G A FTNL +DH+D+H+T + Y AK +LF Sbjct: 161 KTIADEGCEFAVMEVSSHALAQERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEKLF 220 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 I+ DD Y+ E+++ A C+ +V Y ++++ A + + + + Sbjct: 221 SMC----DLGIVNVDDDYAPEIIR---TAKCK--TVTYSARYMN-----ADYTARNIKLK 266 Query: 295 VEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +G +++ + P+PG F VYN L AA +++GI VLE L ++ V GR Sbjct: 267 NDGVEYEMVGNALIGRVSVPIPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGR 326 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T R + +DYAHT ++LE ILK+IR GR++ +FGCGGDRD+ KRPIMG + Sbjct: 327 IEVVPT-GRNFTVIIDYAHTPDALEKILKSIRGFAKGRVVALFGCGGDRDKTKRPIMGMV 385 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVL 462 A AD IVT DNPR+EDP+ I +I+ G+ G ++ NR EAI A++ K D++ Sbjct: 386 AGRGADFCIVTSDNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIV 445 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHE I+ EK + +++ EIL Sbjct: 446 LLAGKGHEDYQIIGR-EKHHFDEREVVAEIL 475 >gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leeuwenhoekiella blandensis MED217] Length = 487 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 169/504 (33%), Positives = 261/504 (51%), Gaps = 38/504 (7%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+D++YK E + P +N + DSR + +FVAI G + DGH FI + Sbjct: 4 LKDILYKVTLESVTGNPNVP-------VNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKK 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 A QGA AI+ +DF I + +T + L++ AS Y EN+ + + Sbjct: 57 AEEQGAIAIICEQM--PEDFVNGI----TYVQTSDTAQALAVMASNYYENPSENLKLVGI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 TGT+GK+++A+ + Q+ ++G F+ G ST+ D TTP + + K L+ Sbjct: 111 TGTNGKTTIATLLHQLFTKAG---FKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAM 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ GV + +E SSHG+ Q R +G+ G FTNL DH+DYH+T Y + K F+ Sbjct: 168 MNEAGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDN 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LPK + A+ DD + +++ R V Y K + + N Q + ++ Sbjct: 228 -LPKTAFALSNIDDKNGQVMLQN-----TRAKKVTYALKSFADYRAQILEN-QFTGLLLK 280 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D + L G F YN L +G+ L++L +L V GRF+++ + + Sbjct: 281 VNDQEVWVKLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISAKKIT 340 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT ++L+ +L+ I I + +I V GCGGDRD+ KRP MGKIA L+ + Sbjct: 341 AI-VDYAHTPDALKNVLETINDIRTKNEELITVVGCGGDRDRTKRPKMGKIAAALSTKVV 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 T DNPRSEDP+ I EI G+ K +R +AI+ A +M + D++++AGKGH Sbjct: 400 FTSDNPRSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKGH 459 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 ET V NGE+ D I++E+L Sbjct: 460 ETYQEV-NGERTDFDDFKIVKELL 482 >gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Phascolarctobacterium sp. YIT 12067] Length = 495 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 244/471 (51%), Gaps = 37/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ I +V++DSR + AG +F+ + G DGH F+ A +GA A +V +D A + Sbjct: 22 DKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAVAALV------EDVPAEV 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ V +TR+ + L Y +P ++ VTGT+GK++ + ++ I +++G Sbjct: 76 PQGVTLIKVADTREAMELVTPYFY-DYPGRKLRMIGVTGTNGKTTSTNIIRLILRKAG-- 132 Query: 144 SFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +++G TI+ D + TTP + L K L + G + +E SSH L R+ Sbjct: 133 -YKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEVSSHALALKRV 191 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEV 256 GI+ TN+ +DH+D+H+T + Y +AK LFE L P A+ DD S + Sbjct: 192 AGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAVFNMDDPSSAII 251 Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +R VL+ G I+ Q+ + + D + GEF VYN Sbjct: 252 RERTK---ANVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLELKITGEFNVYNV 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMI 372 + G +A ID ++ L+ VPGRF+ V G+ Y VDYAHT + LE + Sbjct: 309 MGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLV----EAGQPYTVIVDYAHTPDGLENV 364 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK R+IT G++ VVFGCGGDRD KRP+MG +AL+LAD +VT DNPR+EDPE I EI Sbjct: 365 LKTARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNPRTEDPELIIDEI 424 Query: 433 ---IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +P +R EAI A+ DV+++AGKGHE I+ + Sbjct: 425 FTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQILKD 475 >gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC 43541] Length = 496 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 254/472 (53%), Gaps = 39/472 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR G +FV I G D H FIP A GA A++ + + Sbjct: 24 EITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAGARAVLT------ERDKVAVPP 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + ++ L L Y +P ++ +TGT+GK++ + V+ + + +G Sbjct: 78 GISVLHVPDLQEALDLIVPYFY-DYPARAMRVIGITGTNGKTTTSYLVRAMLRHAGR--- 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI +D+ TTP I + + L+ + ++G+ V +E SSH LDQ R+ G Sbjct: 134 RVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVMEVSSHALDQGRVAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPKESPAIIYADDAYSKEVM 257 I+ FTNL +DH+DYH+T + Y AK RLF E+ + + AI+ ADDA +K M Sbjct: 194 IEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKTAILNADDAAAK--M 251 Query: 258 KRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315 RAH C +++ G + +K+ + ++TI+ G + + + G F VYN Sbjct: 252 MRAHTH-CPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQTGITGLFNVYNV 310 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMI 372 L AAG +A + ++ + L VPGRFE V R G+ + VDYAHT + +E + Sbjct: 311 LAAAGAALAEQVTASDITAALAAFSGVPGRFELV----RAGQDFSVIVDYAHTPDGMENV 366 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R +T+GRII VFGCGGDRD+ KRPIMG+IA +L D+ ++T DNPR+EDP I E+ Sbjct: 367 LRTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPRTEDPAAILDEV 426 Query: 433 IHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 G+ P K +R AI A++ D +V+ GKGHET I+ +G Sbjct: 427 EAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKGHETYQILKDG 478 >gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 20_3] Length = 486 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 174/514 (33%), Positives = 268/514 (52%), Gaps = 54/514 (10%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + P L+ ++ I + SDSR + G +FVA+ G DGH + Sbjct: 1 MELRDLIGALEAPMLMGADNV--------DITNIQSDSRRVTKGSLFVAVRGTAVDGHAY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 + AI +GA AIV A S + +VV ++ + L L SR YG P Sbjct: 53 MDSAIEKGAVAIVCEEAPSY------LEGRCSFIVVKDSAEALGLLVSRWYGD-PSGKLV 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++A+ + ++ ++ G ++G ST+ ++ + TTP P+ L Sbjct: 106 LVGVTGTNGKTTIATLLYEMFRKMG---HKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHS 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ + G + +E SSH +DQ R+ G+ G FTNL RDH+DYH+T + Y AK + Sbjct: 163 LMARMVEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKK 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFI--HLKKVCAIH 286 F++ LP + A+ ADD S VM + A S+ ++GK + H + I Sbjct: 223 FFDD-LPAGTFALTNADDK-SGLVMLQNTKAKKLTYSLRTLADFKGKILESHFEGTDLII 280 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 N ++V + G+ F YN L G +++G D VL L L V GRF Sbjct: 281 NGREVMVHFVGR-----------FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRF 329 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK 404 E + + G VDYAHT ++L +L I + GRII V G GG+RD+GKRP+M K Sbjct: 330 ETI-QSPLGYTAIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAK 388 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK----GNRIEAIRTAIEMLNKQ 459 A L+D I+T DNPR E+P+ I +++ G+ +E+ +R +AI+TA + K Sbjct: 389 EAAKLSDQVILTSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKG 448 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV++VAGKGHE + G K D + +REI Sbjct: 449 DVILVAGKGHEDYQEI-KGVKHHFDDREKLREIF 481 >gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Achromobacter xylosoxidans A8] Length = 951 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 165/476 (34%), Positives = 244/476 (51%), Gaps = 46/476 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG L+I +A+A GA A++ + + A + P+L V Sbjct: 34 DSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDA--VAAVADQAPMLPV 91 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ ++AVTGT+GK+S ++ R+ IG T+ Sbjct: 92 TGLRALLGELADTWYGRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIG---TL 148 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D R LTTP + + + L+ + G V++EASS G++Q R+DG+++ + Sbjct: 149 GAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALAA 208 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV- 267 FTNL RDH+DYH T + Y AK RLF P + A+I ADD + ++ AG Sbjct: 209 FTNLTRDHLDYHGTMERYEAAKARLFR--WPGLTAAVINADDEAGRRLI-----AGLPAG 261 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 +++GY ++ A + + + +G+ F + P L G V N L+ Sbjct: 262 MAMGY--SLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLV 319 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLE 370 AG+ +G+ A + L V GR + V RG + VDYAHT ++L Sbjct: 320 AGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVDYAHTPDALA 379 Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +R + SGR+I +FGCGG+RD GKRP MG+IA DLAD +V+ DNPR+E PE Sbjct: 380 RALSALRAVATARSGRLICLFGCGGERDPGKRPEMGRIAADLADHVVVSSDNPRTESPEA 439 Query: 428 IRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I +I+ GIP + +R AI I DV+++AGKGHET + GEK Sbjct: 440 IVEQILAGIPDSVRPDVQVDRARAIMQTIWAAAPDDVVLLAGKGHETYQDI-GGEK 494 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 30/291 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+D+R I G +FVA+VG D H ++ QA A+GA A VV+ A Sbjct: 511 QIKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARGACAAVVAHAVPDAKL------ 564 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ-- 146 P LV+ +TR L + + ++AVTG++GK++ + + L+ +Q Sbjct: 565 --PQLVLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAM-----LAEWQGE 617 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +T + D I + L L + V +H + +L I Sbjct: 618 AGRLATAGNLNND--------IGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPT 669 Query: 207 GSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + TN R+H ++ + +A + LP++ A+ D+ YS + A Sbjct: 670 VALVTNAQREHQEFMHSVEAVAHENGAAIAA-LPEDGVAVYPGDEPYS--AIWDALAEPR 726 Query: 266 RVLSVGYQ-GKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 RVL G Q G ++ +++ A +H + ++ G D P+PG + N Sbjct: 727 RVLRFGLQPGLDVYAEQILADVHATRCRVVTPMGV-ADLTLPVPGLHNLRN 776 >gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. FW1012B] gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. FW1012B] Length = 487 Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 156/473 (32%), Positives = 248/473 (52%), Gaps = 22/473 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ S + G +FVA+ G DG FIP A+A+GA A VV+ ++ AT R + Sbjct: 24 VAGHSAKVLPGGVFVAVAGPVADGERFIPDALARGA-AHVVAGPGTVLPAGATAR----L 78 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V +N + L A+ YG + + A+TGT+GK+++ ++++ +G ++G Sbjct: 79 VVAENPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGR---KVGVL 135 Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T++ +++ LTTP + + + L+ + + G +EASSH + Q RL G+ A Sbjct: 136 GTVAYRWPGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRLAGLAFAA 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+DYH+ ++YF AK LF L A++ DD + + +++ A Sbjct: 196 GIFTNLTQDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEEFPQALGY 255 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIA 324 L+ G L H ++ + V D P+PG N L A G + Sbjct: 256 GLTAPPAGFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALV 315 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G+ +A + H PGR E + N R ++VDYAHT ++LE +L R T G++ Sbjct: 316 LGLPAAAFAALAD-CHGAPGRLERI-ANPRDLTVFVDYAHTPDALENVLGAAREFTKGKL 373 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIE 441 VFGCGGDRD+ KRP+M AD+A++T DNPR EDP I A+ G+ G + Sbjct: 374 FAVFGCGGDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLAIMADARPGLAGARRAVA 433 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI A+ + +DVLV+AGKGHET + + + S D ++RE+ G Sbjct: 434 EPDRRRAIGLALSEMGPEDVLVIAGKGHETYQQIGDVKHPFS-DAAVVRELTG 485 >gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 488 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 168/481 (34%), Positives = 256/481 (53%), Gaps = 29/481 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E++ DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q Sbjct: 18 LTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQHLQVHYEQG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + LS A Y ++P ++ VTGT+GK++ A + Q Q G + Sbjct: 78 IPLIAFYRLSENLSRLADVFY-QYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTGAV 136 Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + F Q + TT S + + +L+ ++G ++E SSHGL QHR++ + Sbjct: 137 MG---TIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESV 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL RDH+DYH T + Y AK RLF EL + II ADD + + Sbjct: 194 HFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQ--IIDADDPVGAVWLAEMPH 251 Query: 263 AGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315 A ++V + F+ LK V N + TI E + + PL G F V N Sbjct: 252 A----VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+ + + + ++ + KL V GR E + T + + VDYAHT ++LE L+ Sbjct: 308 LLVTATLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKP-TVIVDYAHTPDALEKALQA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ +FGCGGDRD GKRP+M KIA LAD I TDDNPR+E+P+KI A+I++G Sbjct: 367 ARLHCRGKLWCIFGCGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEPKKIMADILNG 426 Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 P ++ R +AI TAI+ + DV+++AGKGHE I+ + S D +++R Sbjct: 427 FVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIGKTKYHFS-DQEVVRNY 485 Query: 493 L 493 L Sbjct: 486 L 486 >gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 500 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQTNEKDVILIAGKGHEDYQII 483 >gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_2_5] gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase [Bacteroides fragilis 638R] Length = 485 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 158/489 (32%), Positives = 260/489 (53%), Gaps = 45/489 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR +++G +F+A+ G + DGH +IP A+ +GA AI+ ++ A + Sbjct: 22 EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + A+ YG +P + ++ VTGT+GK+++A+ + + G + Sbjct: 76 GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK + F++ +PK S ++ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + R LS ++G+ + H + + N ++ + GK F N Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357 Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417 Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ +K +R EAIRTA + K DV++VAGKGHE + G K D ++ Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476 Query: 489 IREILGLIL 497 ++EI L + Sbjct: 477 LKEIFSLTV 485 >gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 500 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQ--VLNADDEVGRE 255 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + + +A + + +K + Q V I+ E + + L G F V Sbjct: 256 WLAKLPDAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVN 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 316 NLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALE 375 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A Sbjct: 376 KALQAARLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIMA 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 436 DILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica PHL213] Length = 496 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 175/488 (35%), Positives = 243/488 (49%), Gaps = 25/488 (5%) Query: 25 WRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-- 80 W E ++ +++ DSR +QAG +FVA+ G++ DG FIP AI QGA AI+++ A Q Sbjct: 14 WVEELTELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGA-AIILAEADEDQPE 72 Query: 81 --------DFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 F+ + ++ V K LS A LY H + +TGT+GK++ A Sbjct: 73 IELDPKFAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTA 132 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q G S +G + Q+ TT S I + L+ G ++E Sbjct: 133 QLLAQWHNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEV 192 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R + + FTNL RDH+DYH T + Y AK RLF EL K +I AD Sbjct: 193 SSHGLAQFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQ--VINAD 250 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLP 307 D +E + + NA + G +K Q +I+ E + + L Sbjct: 251 DEIGREWLTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLI 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A +A+G D +++ L V GR E + T + VDYAHT + Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQELVKTAPNLVGVAGRMECI-TAPNKPMVIVDYAHTPD 369 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L+ R G + +FGCGGDRD GKRP+M IA L D I TDDNPR+ED +K Sbjct: 370 ALEKALQAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQK 429 Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I A+I+ G P I NR EAI+TAIE DV+++AGKGHE I+ EK D Sbjct: 430 IMADIVKGFSKPQQIIH-NREEAIKTAIEQAKATDVILIAGKGHEDYQIIGT-EKLHFSD 487 Query: 486 CDIIREIL 493 + R+ L Sbjct: 488 QETARKYL 495 >gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 471 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 167/491 (34%), Positives = 258/491 (52%), Gaps = 45/491 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + +E ++ V SDSR I+AG++FVAIVG + DGH I ++I GA+ I+ Q Sbjct: 5 FEGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIIC------QTL 58 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139 T+R + + V ++ K L S L+ P ++ VTGT+GK++V + + ++ ++ Sbjct: 59 PVTLRPDVTYICVKDSAKALGQIVS-LWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRK 117 Query: 140 SGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G +++G STI + D + TTP I L L + S+G +V +E SSH +D Sbjct: 118 LG---YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAID 174 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ G++ G FTNL RDH+DYH+T Y + K F +LLP + A+ DD Sbjct: 175 QKRIAGLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFF-DLLPTGAFALANKDD----- 228 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGE 309 N + + KF L+ + ++ +++ K+ L L G+ Sbjct: 229 -----KNGAFMLQNTKAHKKFYSLQSLADFKSRILESHFNGTLMTINDKELSTL--LVGK 281 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F YN L G I +G +S +L L L V GRFE + SRG + VDYAHT ++L Sbjct: 282 FNAYNLLAIYGTAILLGQNSDEILVLLSVLRPVIGRFETLNA-SRGFTVIVDYAHTPDAL 340 Query: 370 EMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +L I I + G+II V GCGG+RD+GKR IM + A+ L+ I+T DNPR E+P Sbjct: 341 INVLNTINEILARKGKIITVIGCGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGD 400 Query: 428 IRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +++ G+ +K +R EAIRTA + D++++AGKGHE + G K Sbjct: 401 IIEDMLAGLDDIQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKGHEDYQEI-KGVKNH 459 Query: 483 SVDCDIIREIL 493 D ++ EI+ Sbjct: 460 FNDKKVVMEII 470 >gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dickeya zeae Ech1591] gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591] Length = 494 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 176/489 (35%), Positives = 252/489 (51%), Gaps = 31/489 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG+K DG +IPQAIAQG A+V + + D + T Sbjct: 19 ERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLTE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ +D+ LS A R Y + P + L + G +G + + Q + Q S Sbjct: 79 MHGVPVIYLDDLNLRLSALAGRFY-RQPSSSLQLVGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + + LS L +QG ++E SSHGL QHR Sbjct: 134 LGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + A FTNL RDH+DYH Y AK RLF E + II ADD + + Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKIINADDEVGRRWLS 251 Query: 259 RAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 R +A ++V G +++ ++ + VT L GEF Sbjct: 252 RLPDA----VAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSRLMGEFN 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +++G ++E L V GR E + R + VDYAHT ++LE Sbjct: 308 VSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGR-PTVVVDYAHTPDALEK 366 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSEDP+ I + Sbjct: 367 ALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVTD 426 Query: 432 IIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I+ G+ G ++ R EA+ +A+ DV++VAGKGHE +V N E+ D Sbjct: 427 ILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRIT 485 Query: 489 IREILGLIL 497 + +LG+I+ Sbjct: 486 VARLLGVIV 494 >gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 9_1_42FAA] Length = 484 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 156/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I+ ++ DSR I+ G IF+A+ G + DGH +I +AI +GA +V ++ T+ Sbjct: 21 QEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V++T + A+ YG + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ + + TTP PI L K L ++ +G + +E SSH + Q R+ G Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK F+ LPK + A+ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + H R LS ++GK + + + V ++V+ G F N L Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +G + VL L L V GRF+ + + +G VDYAHT ++LE +L I Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359 Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +G+ +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P++I +++ G Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I +R EAIRTA + +DV++VAGKGHE + G K D +++R Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGVKHHFDDKEVLR 478 Query: 491 EIL 493 +I Sbjct: 479 DIF 481 >gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp. 1_3_56FAA] Length = 500 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 170/473 (35%), Positives = 253/473 (53%), Gaps = 21/473 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N ++ S +Q G F +VG DGH F AI +GA+ +VV L D Sbjct: 21 DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 ++ +VV +TRK ++ A+ Y HP LA+ G +G + + V+ I + +G Sbjct: 76 ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDLALVGITGTNGKTTTTYLVEHIARVAGKR 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG I A+ + TTP L + L+ + V++E SSH LD R Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVVAMEVSSHALDLDRTWDA 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +F+NL +DH+DYH T +AYF AK RLF + P + +I DD + KE+++R Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A V++ G+ IH V VT+ V G F +PL G+F V N + A G+ Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380 + +G + ++E LE+ +PGR E V + GG ++VDYAHT ++LE L +I +T Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+EDP+ I +I+ G+ Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 F + +R AI AI D +++AGKGHE +V G++ +S D I+ Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482 >gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase [Achromobacter piechaudii ATCC 43553] Length = 952 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 244/480 (50%), Gaps = 44/480 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG L+I +A+A GA A++ + S D +TP+L V Sbjct: 34 DSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGS--DALQAAAGSTPMLPV 91 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ ++AVTGT+GK+S ++ R+ IG T+ Sbjct: 92 TGLRALLGELADTWYGRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIG---TL 148 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D R LTTP + + + L+ + G V++EASS G++Q RLDG+++ + Sbjct: 149 GAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAQAVAMEASSIGIEQGRLDGVRVALAA 208 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y AK RLF P + A++ ADD + ++ + Sbjct: 209 FTNLTRDHLDYHGTMERYEAAKARLFN--WPGLTAAVVNADDEAGRRLLATLPTG---MA 263 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAA 319 ++GY + A + + + +G+ F + P L G V N L+ A Sbjct: 264 AMGY--SLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVA 321 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEM 371 G+ +G+ A + L V GR + V + RG + VDYAHT ++L Sbjct: 322 GVLYKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVDYAHTPDALSR 381 Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R + SGR+I +FGCGG+RD GKRP MG+IA LAD +V+ DNPR+E P+ I Sbjct: 382 ALTALRAVAVARSGRLICLFGCGGERDPGKRPEMGRIAAQLADHVVVSSDNPRTESPQDI 441 Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ GIP + +R AI I + DV+++AGKGHET + G K+ D Sbjct: 442 IDQILAGIPPAANVDVQVDRARAIMQTIWSASPDDVVLLAGKGHETYQDI--GGDKLPFD 499 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 32/375 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ VS+D+R I G +FVA+VG D H ++ QA +GA A VV+ A S S Sbjct: 512 QVSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRGACAAVVAHAVS--------DS 563 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LV+ +TR L + + ++AVTG++GK++ + + L+ +Q G Sbjct: 564 KLPQLVLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAM-----LAEWQ-G 617 Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + +++ +N + P + +A + + G+ H A L + L+ Sbjct: 618 ESGRLATAGNLNNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQ---LAAMAAPTVTLV 674 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN R+H ++ T +A + LP + A+ D+ Y + A Sbjct: 675 ----TNAQREHQEFMHTVEAVAHENGAAIAA-LPDDGVAVYPGDEPYC--AIWDALAEPR 727 Query: 266 RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 RVL G Q G ++ +++ A + + + D P+PG + NAL A IA Sbjct: 728 RVLRFGLQPGLDVYAEQILADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIA 787 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382 G+ + L + V GR + + G + +D + +N S+ + + + I Sbjct: 788 SGVPLDCAVRALSRFAPVAGRMQHKKMSD--GTLLIDDTYNANPDSVRVAIDVLARIAGT 845 Query: 383 RIIVVFGCGGDRDQG 397 R++V+ G D G Sbjct: 846 RVLVLGDMGEIGDNG 860 >gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio fischeri MJ11] Length = 493 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 160/493 (32%), Positives = 255/493 (51%), Gaps = 18/493 (3%) Query: 17 QLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 QLS + W E I+ ++ DSR + G +FVAI G+ DG FI AI QGA A++ Sbjct: 3 QLSELLLSWCELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVI 62 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVA 130 + + + +N ++ +D+ LS A Y K ++ +TGT+GK++++ Sbjct: 63 ADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTNGKTTIS 122 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q + +G T + S + TT SPI + + L+ L + G ++E Sbjct: 123 QIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTALEV 182 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R++ + A FTNL RDH+DYH + Y AK LF PK S II AD Sbjct: 183 SSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHS--IINAD 240 Query: 250 DAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 D + +K +A L+ + GK + V Q+++S + + F P Sbjct: 241 DQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSVSSDWGNVAFSVP 300 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F N LVA +++G D + + +L+ V GR E +++ ++ VDYAHT Sbjct: 301 LIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELFTADNKA-KVVVDYAHT 359 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L+ L+ +R G++ +FGCGGDRD GKRP+M IA AD+ I++DDNPRSE+P Sbjct: 360 PDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVIILSDDNPRSEEP 419 Query: 426 EKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +++ G+ +R EA + A+ N+ D++++AGKGHE ++ + Sbjct: 420 SLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKGHEDYQVLADKTVYY 479 Query: 483 SVDCDIIREILGL 495 S D + + +LGL Sbjct: 480 S-DRETAQTLLGL 491 >gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens SBW25] gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate ligase [Pseudomonas fluorescens SBW25] Length = 487 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 251/478 (52%), Gaps = 36/478 (7%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ AY + Sbjct: 8 IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAV----AYEV 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + + ++ P++ V K LS A R YG N++ VTGT+GK+SV V Q Sbjct: 64 EGATVLPITDVPLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQAL 123 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G Q TTP+PI + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGQHCGIVGTLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSK 254 R+ + TNL RDH+DYH T +AY AK +LF +L + ++ DDA+ + Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCR----VVNLDDAFGR 239 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQV 312 ++ A ++ R++S + +L A N + V T+ + L G F + Sbjct: 240 QLA--AEDSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367 N L A G + G+D AL +L L KL GR + +G GG+ + VDYAHT + Sbjct: 298 SNVLAAIGALL--GLDYALDEILRVLPKLEGPAGRMQRLG----GGKQPLVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R G+++ +FGCGGDRD+GKRP+M +I LAD +VTDDNPRSEDP + Sbjct: 352 ALEKVLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQ 411 Query: 428 IRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I +I G F+ R AI I + DV+V+AGKGHE + NGE+ Sbjct: 412 IFDDIRAGFNDVSKAAFV--AGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGER 466 >gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D4] gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855] gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides dorei 5_1_36/D4] Length = 484 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 156/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I+ ++ DSR I+ G IF+A+ G + DGH +I +AI +GA +V ++ T+ Sbjct: 21 QEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V++T + A+ YG + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ + + TTP PI L K L ++ +G + +E SSH + Q R+ G Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK F+ LPK + A+ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + H R LS ++GK + + + V ++V+ G F N L Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +G + VL L L V GRF+ + + +G VDYAHT ++LE +L I Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359 Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +G+ +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P++I +++ G Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I +R EAIRTA + +DV++VAGKGHE + G K D +++R Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478 Query: 491 EIL 493 +I Sbjct: 479 DIF 481 >gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus ATCC 7061] Length = 493 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 166/502 (33%), Positives = 251/502 (50%), Gaps = 57/502 (11%) Query: 1 MKLQDLIY---KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L+ + ELIN+ I + DSR ++ G +FV I G DGH Sbjct: 3 MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKKGSLFVCIKGYTVDGH 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115 + +A+ GA AIV ++ + P+++V ++++ L+ A Y + H Sbjct: 54 DYAEKAVKSGATAIVAEHPLNI--------TEVPVIIVKHSQRALARIADAFYEQPTHKL 105 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 N++ +TGT+GK+S ++Q+ +++ + IG ++ D + TTP + L K Sbjct: 106 NLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + Q V +E SSH L R+ G FTNL +DH+DYH T + Y +AK LF Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225 Query: 235 EEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 +L K AI+ ADD S K V++ + K + K Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVT---AAEVMTYALERKADVMAK-------- 274 Query: 290 QVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + I +G FD + P L G+F VYN L A + I G+ ++ +E+L Sbjct: 275 NIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELE 334 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GRFE V + + + VDYAHT +SLE +L + +T G+I V GCGGDRD+ KRP Sbjct: 335 GVKGRFELVNCD-QDFPVIVDYAHTPDSLENVLTTCKELTEGKIFCVIGCGGDRDKTKRP 393 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455 M +IA+ AD + T DNPRSEDP I ++ +G+P F+ NR +AI AI Sbjct: 394 QMAQIAVKYADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFV---NRKQAIFFAIAN 450 Query: 456 LNKQDVLVVAGKGHETVHIVTN 477 K D +++AGKGHET I+ + Sbjct: 451 AKKGDTVLIAGKGHETYQIIDD 472 >gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM 14684] Length = 491 Score = 242 bits (618), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 244/473 (51%), Gaps = 22/473 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ D+R +Q G +F + G DGH F P A+A+GA A+VV L Sbjct: 24 EIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPLGL--------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + R ++ A+ G + + VTGT+GK++ A V+ + + +G + Sbjct: 75 GVPELRVASVRAAMARAAANFNGDPTARLQTVGVTGTNGKTTTAFLVRGLLEAAGRQTGL 134 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + + A++ + TT I L L + G ++E SSH L+ HR D ++ Sbjct: 135 LGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRADAVRFA 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNA 263 A FTNL +DH+D+H T + YF AK RLFE A++ DD Y + + + RA A Sbjct: 195 AAIFTNLTQDHLDFHPTMEDYFLAKRRLFET---GPGVAVVNVDDPYGRRLAEELRADGA 251 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +++ + + + + + +G PLPG F V N L A Sbjct: 252 ALVTIALDHDADYRATELTTGLTGSAFTAQTPQGP-IALRTPLPGRFNVQNVLGAVAAVR 310 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G+ + L + VPGRFE V +G + VDYAHT +SL+ +L+ R +T + Sbjct: 311 ALGVPLEQIAAALPQAGRVPGRFEPV-DEGQGFAVLVDYAHTPDSLDNVLQAARGLTERQ 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 ++ VFGCGGDRD+ KRP+MG IA LAD A VT DNPRSEDPE+I +++ G P Sbjct: 370 VLTVFGCGGDRDRTKRPLMGGIAARLADEAYVTSDNPRSEDPEQILRDVVEGTGTGPHVH 429 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI A+ + DVLV+AGKGHE GEK D + RE L Sbjct: 430 VEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQEFAGGEKLPFDDVTVAREAL 482 >gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides thetaiotaomicron VPI-5482] Length = 482 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 164/504 (32%), Positives = 265/504 (52%), Gaps = 48/504 (9%) Query: 14 LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+N+L +I P+Q +I V+ DSR ++AG +F+A+ G + DGH +IP AI +GA Sbjct: 2 LLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 AI+ +D + + V ++ + A+ YG ++ VTGT+GK Sbjct: 62 TAILC------EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + + G +++G ST+ ++ D + TTP PI L + L ++ +G Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGC 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + Sbjct: 173 KYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231 Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296 ++ DD ++ + + R LS ++G+ I H + + N ++ + Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVIESHFEGMLLDFNNHELAVQFI 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK F N L G + +G VL L LH V GRF+ + + +G Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I Sbjct: 339 TAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G+ K +R EAIRTA + K DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D ++++EI Sbjct: 459 ENYQEI-KGVKHHFDDKEVLKEIF 481 >gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus ruminis ATCC 25644] Length = 491 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 245/476 (51%), Gaps = 42/476 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + + +++ + SD+R ++ IFVAI G DGH FIP+AI +GA+AIVV Sbjct: 15 VSPKDYDDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVV------ 68 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 Q+ + I+ T I+ V+NT + L++ A + YG + ++ VTGT+GK++V ++ I Sbjct: 69 QEETDDIQGVT-IVRVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIF 127 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + IG I TTP + L K + + + V ++E SS L Q Sbjct: 128 RDQKDRTGLIGTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQ 187 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYS 253 R+ GI + FTN +DH+DYH+T Y +AK LF +L + A+I DD Sbjct: 188 GRVWGIDVDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEMG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------- 304 K A + +VL+ G + A+ V I +G DFD Sbjct: 248 KNF---AQDTATQVLTYGIKND--------AMIKASNVNIHSQGTDFDLKVFEDEYHLHV 296 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 G F VYN L A G A G+ ++E LEK V GR + + ++ G VDY+H Sbjct: 297 KTVGMFNVYNLLAAFGAAYANGVSVHAIIESLEKFPGVKGRLQLISSDC-GISAIVDYSH 355 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + L L+ I SG + V GCGGDRD KRP M +IA++ ++ I T DNPR+ED Sbjct: 356 TPDGLLNALETINEFASGDVYCVVGCGGDRDATKRPKMAQIAVEYSNHPIFTSDNPRTED 415 Query: 425 PEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PEKI +++ G+P EK +R EAI+ A+ N D++++AGKGHE I+ Sbjct: 416 PEKILDQMLSGVP---EKNVPVYLDRREAIQAAVNAANPGDIILIAGKGHEDYQII 468 >gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prosthecochloris vibrioformis DSM 265] gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeovibrioides DSM 265] Length = 515 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 245/467 (52%), Gaps = 38/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-SATIR 87 ++ +SSDSR I+ G +FVA+ G + DGH F+ A+++GA A++ ++F + Sbjct: 28 SLSMISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVIC------EEFPGGDVP 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + R L+ A LYG E +++ V+GT+GK++ A + + +G+ Sbjct: 82 PGVCFIKAPDARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCG 141 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T + D + TTP L + L + +G V++E SSH L R+ G Sbjct: 142 YIG---TGRAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVMK 258 ++ FTNL DH+D+H + +AY +AK RLF +LLP E A+ DD + E + Sbjct: 199 VRFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLP-EGRAVFNMDDPRAPFMAEGLP 257 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDFDFLFPLPG 308 A +GC + V + + VC +VT +S FD LPG Sbjct: 258 PASCSGCSLSGVERRAD----RSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPG 313 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V NAL+AA C A+G+ L V GR E V R VDYAHT ++ Sbjct: 314 RFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGRVRAIVDYAHTPDA 373 Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L+ +L+ + + GR+ VVFGCGGDRD KRP+MG+IA ++AD+ I+T DNPRSEDPE Sbjct: 374 LQRVLQTLARLKPAGGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVILTSDNPRSEDPE 433 Query: 427 KIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +I +I G+ G +R AI TA+ L + D+L+VAGKG E+ Sbjct: 434 RILDDIEQGMSCIGHRRIADRGTAISTAVAELGELDILLVAGKGRES 480 >gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 1_1_6] gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 1_1_14] Length = 482 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/504 (32%), Positives = 265/504 (52%), Gaps = 48/504 (9%) Query: 14 LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+N+L +I P+Q +I V+ DSR ++AG +F+A+ G + DGH +IP AI +GA Sbjct: 2 LLNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 AI+ +D + + V ++ + A+ YG ++ VTGT+GK Sbjct: 62 TAILC------EDIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + + G +++G ST+ ++ D + TTP PI L + L ++ +G Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGC 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +V +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + Sbjct: 173 KYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231 Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296 ++ DD ++ + + R LS ++G+ I H + + N ++ + Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVIESHFEGMLLDFNNHELAVQFI 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK F N L G + +G VL L LH V GRF+ + + +G Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAI-RSPKGV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I Sbjct: 339 TAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P++I +++ G+ + +R EAIRTA + K DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D ++++EI Sbjct: 459 ENYQEI-KGVKHHFDDKEVLKEIF 481 >gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4] Length = 492 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 247/483 (51%), Gaps = 36/483 (7%) Query: 22 PMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 P R K+N ++ DSR ++ G+IF AI G DGH FIP+A+A+GA IV Sbjct: 12 PTLERIMKLNPRGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAER---- 67 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASF 132 + + VV NTR+ L+ A++ YG HP L V G +G + ++S Sbjct: 68 ---KVEVPPGVVLEVVPNTRRALAWAAAQFYG-HPSRKLHVVGVTGTNGKTTTTHLLSSL 123 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 Q+ ++ GL IG + A TTP + L L+ + +G+ +E SS Sbjct: 124 YQEQGKKVGL----IGTLYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSS 179 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYA 248 HGL R+ G+ FTNL +DH+D+H+ + YF K RLF ELL P + A+I Sbjct: 180 HGLALERVTGVAFDVAVFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINR 239 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DD Y + + G VL+ G + +H ++ S G+ + LPG Sbjct: 240 DDPYGQRLTSLCR--GVEVLTYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPG 297 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F VYNAL A + + G+ L L ++ VPGR E + + + VDYAHT + Sbjct: 298 IFNVYNALAALAVAVGEGMPLDLAARALSRVQAVPGRCERI-DEGQDFTVLVDYAHTPDG 356 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L IL+ R I+ GR+IVVFGCGGDRD KRP+MG+IA + AD+ +VT DNPRSEDP I Sbjct: 357 LLNILRTAREISRGRVIVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAI 416 Query: 429 RAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I G+ ++ +R AI+ A D++++AGKGHE I+ G+K++ Sbjct: 417 MQAIAQGLAQVAPPSRYLLIEDREAAIKEAFARARPGDIVILAGKGHENCQII--GDKRI 474 Query: 483 SVD 485 D Sbjct: 475 PFD 477 >gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 129PT] Length = 495 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 250/483 (51%), Gaps = 25/483 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ ++ E+ DSR G +FVAI G++ DG FI QAI GA A++ + Q + + Sbjct: 19 RDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 N P++ K LS A R Y + ++ VTGT+GK+++A + Q Q G + Sbjct: 79 FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138 Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G F Q + TT S I + +L QG ++E SSHGL QHR++ Sbjct: 139 SAVMGTIGN-GLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEA 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + AG FTNL RDH+DYH T + Y AK RLF EL + I+ DD + Sbjct: 198 LTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHK--ILNVDDEIGATWLIELS 255 Query: 262 NAGCRVLSVG----YQGKFIHLKKVCAI--HNK-QQVTISVEGKDFDFLFPLPGEFQVYN 314 V++V YQ + K A+ H+K + + + PL G F V N Sbjct: 256 KDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+ +++G D +L + +L V GR E + + + VDYAHT ++LE L+ Sbjct: 316 LLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQ 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++ +FGCGGDRD+GKRP+M IA AD IVTDDNPR+E+PE+I +I Sbjct: 375 SAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDI-- 432 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + GF + R +AI+TA++ + DV+++AGKGHE I+ + S D +I Sbjct: 433 -LTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGTTKYHFS-DQEI 490 Query: 489 IRE 491 +++ Sbjct: 491 VKK 493 >gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus 16] Length = 493 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 238/460 (51%), Gaps = 11/460 (2%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + I+ + DSR I G FVAI G+ DG FI AI +GA A++ S Sbjct: 21 EFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIAQSCERHPQGV 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + S P++ +D + LS ASRLY ++ VTGT+GK+++ + Q G Sbjct: 81 CSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQIIAQWLNLVGKR 140 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G Q TT S I + + L + SQG ++E SSHGL Q R+ + Sbjct: 141 AAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSHGLVQGRVKTL 200 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 AG FTNL RDH+DYH T + Y AK LF E + AII DD + ++ + Sbjct: 201 PFAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE--HQCGKAIINVDDQVGAKWAEQLPD 258 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320 A L + +V +++ ++++ G+ D F PL GEF N LVA Sbjct: 259 AIQVSLQPLSSTNAVFASQVD--YSESGISLAFSGRFGDGQFSVPLIGEFNANNVLVAFT 316 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A+GID ++E ++L V GR E N ++ VDYAHT ++LE L +R Sbjct: 317 TLLALGIDKQQLIETAKQLTPVIGRMELF-HNEGKAKVVVDYAHTPDALEKALMALRVHC 375 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 G++ +FGCGGDRD GKRP+M +I LAD ++ DDNPRSE P I +++ G+ Sbjct: 376 HGKLWAIFGCGGDRDTGKRPMMAEIGERLADHVVLADDNPRSESPSAIVDDMLAGMRNPE 435 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I + +R +A++ A+ D++++AGKGHE ++ N Sbjct: 436 RAIVEHDRFKALQYALANSEVHDIILLAGKGHEDYQVLAN 475 >gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 483 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 264/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + ++F+AI G K DG L++ +AI GA AIVV ++++ Sbjct: 22 IGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAIVVDR--EIKEYPGV---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L R++ + Sbjct: 132 GLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVNECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H + Y K +LF+ + K + ++I DD YS ++ ++ Sbjct: 192 FDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RVL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 246 KARVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLKIPGLFSVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + +++DYAHT + ++ +++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNMMEALKEYKAG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG++A AD I+T DNPRSE+P +I ++I GI Sbjct: 364 RKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTSDNPRSEEPREIISQIEEGIKKTDCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAIR A+ K DV+++AGKGHET I+ G K + D +I++EIL Sbjct: 424 YVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477 >gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis NCTC 9343] gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteroides fragilis NCTC 9343] Length = 485 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/489 (32%), Positives = 260/489 (53%), Gaps = 45/489 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR +++G +F+A+ G + DGH +IP A+ +GA AI+ ++ A + Sbjct: 22 EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + A+ YG +P + ++ VTGT+GK+++A+ + + G + Sbjct: 76 GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 ++ G FTNL RDH+DYH+T + Y AK + F++ +PK S ++ DD ++ Sbjct: 192 LRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + R LS ++G+ + H + + N ++ + GK F N Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357 Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417 Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ +K +R EAIRTA + K DV++VAGKGHE + G K D ++ Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476 Query: 489 IREILGLIL 497 ++EI L + Sbjct: 477 LKEIFSLTV 485 >gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Fusobacterium sp. 1_1_41FAA] Length = 485 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 246/470 (52%), Gaps = 34/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 RK + + DSR ++ +IFVA+ G DGH +I A+ GA I+VS ++ Sbjct: 19 RKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSR-------KVEMK 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC-----QR 139 +++D R L AS Y + P+ I+ VTGT+GK+S ++++ R Sbjct: 72 HKVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITR 130 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G ++IG F N TTP + L K + + +V +E SSH L+ R+ Sbjct: 131 IGTIEYKIGD----EVFEAVN--TTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRV 184 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + FTNL +DH+DYH T + YF AK +LF +L + ++ DD Y K + Sbjct: 185 DVLDFDYALFTNLTQDHLDYHVTMENYFQAKRKLFLKL-KDINNSVFNIDDKYGKRLYDE 243 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++S G G + + + + + I + K F L G+F +YN L A Sbjct: 244 FIEDNPEIISYGIDGGDLEGEYL----DDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAV 299 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +GI +LE + + PGRFE + + ++ VDYAHT ++L ++ R I Sbjct: 300 AIARKMGISWEDILERVSNIKAAPGRFEALNC-GQDYKVIVDYAHTPDALVNVIVAARNI 358 Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 +G RII +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++ G Sbjct: 359 RNGNRIITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTK 418 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ + +R +AI+ AI M K D++++ GKGHET HI+ G KK D Sbjct: 419 TDDYLFEPDREKAIKLAINMAEKNDIILITGKGHETYHII--GTKKWHFD 466 >gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 488 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 252/478 (52%), Gaps = 23/478 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E++ DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q Sbjct: 18 LTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQHLQVHYEQG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + LS A Y ++P ++ VTGT+GK++ A + Q Q G + Sbjct: 78 IPLIAFYRLSENLSRLADVFY-QYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTGAV 136 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + ++ TT S + + +L+ ++G ++E SSHGL QHR++ + Sbjct: 137 MGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVHFS 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTNL RDH+DYH T + Y AK RLF EL + II ADD + +A Sbjct: 197 AAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQ--IIDADDPVGAVWLAEMPHA-- 252 Query: 266 RVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVA 318 ++V + F+ LK V N + TI E + + PL G F V N L+ Sbjct: 253 --VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLV 310 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G + ++ + KL V GR E + + + VDYAHT ++LE L+ R Sbjct: 311 TATLLTLGYPLSGLINSVHKLTGVCGRMEILHAPQKP-TVIVDYAHTPDALEKALQAARL 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 G++ +FGCGGDRD GKRP+M +IA LAD I TDDNPR+E+P+KI A+I++G Sbjct: 370 HCRGKLWCIFGCGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEPKKIMADILNGFVH 429 Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P ++ R +AI TAI+ + DV+++AGKGHE I+ + S D ++ R L Sbjct: 430 PQSVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIGKTKYHFS-DQEVARNYL 486 >gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides vulgatus ATCC 8482] gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides vulgatus PC510] Length = 484 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I+ ++ DSR I+ G IFVA+ G + DGH +I +AI +GA +V ++ T+ Sbjct: 21 QEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V++T + A+ YG + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ + + TTP PI L K L ++ +G + +E SSH + Q R+ G Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK F+ LPK + A+ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG-LPKTAFALTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + H R LS ++GK + + + V ++V+ G F N L Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +G + VL L L V GRF+ + + +G VDYAHT ++LE +L I Sbjct: 301 VYGAACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359 Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +G+ +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P++I +++ G Sbjct: 360 EVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I +R EAIRTA + +DV++VAGKGHE + G K D +++R Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478 Query: 491 EIL 493 +I Sbjct: 479 DIF 481 >gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Bacteroides xylanisolvens XB1A] Length = 482 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D L TTP PI L + L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R L ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_16] Length = 485 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 157/489 (32%), Positives = 259/489 (52%), Gaps = 45/489 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR +++G +F+A+ G + DGH +IP A+ +GA AI+ ++ A + Sbjct: 22 EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPAELAE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + A+ YG +P + ++ VTGT+GK+++A+ + + G + Sbjct: 76 GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK + F++ +PK S ++ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + R LS ++G+ + H + + N ++ + GK F N Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357 Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417 Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ +K +R EAIRTA + K D ++VAGKGHE + G K D ++ Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKGHENYQDI-KGVKHHFDDKEV 476 Query: 489 IREILGLIL 497 ++EI L + Sbjct: 477 LKEIFSLTV 485 >gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus somnus 2336] gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336] Length = 495 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 251/483 (51%), Gaps = 25/483 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ ++ E+ DSR + G +FVAI G++ DG FI QAI GA A++ + Q + + Sbjct: 19 RDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGASAVLFETDLVEQHLTVS 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 N P++ K LS A R Y + ++ VTGT+GK+++A + Q Q G + Sbjct: 79 FEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGKTTIAQLLAQWTQILGHT 138 Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +G F Q + TT S I + +L QG ++E SSHGL QHR++ Sbjct: 139 SAVMGTIGN-GLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFAAIEVSSHGLVQHRVEA 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + AG FTNL RDH+DYH T + Y AK RLF EL + I+ DD + Sbjct: 198 LTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHK--ILNVDDEIGATWLIELS 255 Query: 262 NAGCRVLSVG----YQGKFIHLKKVCAI--HNK-QQVTISVEGKDFDFLFPLPGEFQVYN 314 V++V YQ + K A+ H+K + + + PL G F V N Sbjct: 256 KDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNGILSSPLIGGFNVSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+ +++G D +L + +L V GR E + + + VDYAHT ++LE L+ Sbjct: 316 LLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEMLSAKHK-ATVIVDYAHTPDALENALQ 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++ +FGCGGDRD+GKRP+M IA AD IVTDDNPR+E+PE+I +I Sbjct: 375 SAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNPRTENPEQIMQDI-- 432 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + GF + R +AI+TA++ + DV+++AGKGHE I+ + S D +I Sbjct: 433 -LTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGTTKYHFS-DQEI 490 Query: 489 IRE 491 +++ Sbjct: 491 VKK 493 >gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 498 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 168/500 (33%), Positives = 262/500 (52%), Gaps = 47/500 (9%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E++ + + E ++ ++ DSR G++FVA+ G + DGH +I A+ GA Sbjct: 3 FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126 A+++ L D+ A R V ++RK L+L ++R Y +P ++ VTGT+GK Sbjct: 63 AVILQKDMILPDYIAWAR-------VPDSRKALALLSARFY-NYPSRRLKMIGVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ A ++ + + +G + IG + I + + TTP L LS + GV V Sbjct: 115 TTTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVV 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-- 243 ++E SSH L+ HR+DG + FTNL +DH+D+H+ + Y AK LF L Sbjct: 175 AMEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNG 234 Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 AII ADD + + + + G +V++ G +KK I + +T+ +G F Sbjct: 235 AKYAIINADDEAAARLTRLS---GGQVITYGM------VKKADII--AENITVRADGASF 283 Query: 301 DFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 L G+F VYNAL A + + G ++ LE + VPGRFE V Sbjct: 284 TVASRQGKVTINLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELV-D 342 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + VDYAHT + L IL R T+G++I VFGCGGDRD+ KRP+MG+I+ L+D Sbjct: 343 EGQDFAVIVDYAHTPDGLRNILNTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSD 402 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVA 465 IVT DNPR ED ++I +I+ GI +E+ +R AI+ A+ DV+++A Sbjct: 403 FTIVTSDNPRREDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIA 462 Query: 466 GKGHETVHIVTNGEKKMSVD 485 GKGHET I+ G+ + + D Sbjct: 463 GKGHETYQII--GDVRYAFD 480 >gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 4_3_47FAA] gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_40A] Length = 484 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 257/483 (53%), Gaps = 39/483 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I+ ++ DSR I+ G IFVA+ G + DGH +I +AI +GA +V ++ T+ Sbjct: 21 QEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V++T + A+ YG + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ + + TTP PI L K L ++ +G + +E SSH + Q R+ G Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK F+ LPK + A+ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDG-LPKTAFALTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + H R LS ++GK + + + V ++V+ G F N L Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +G + VL L L V GRF+ + + +G VDYAHT ++LE +L I Sbjct: 301 VYGAACLLGKKAEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359 Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +G+ +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P++I +++ G Sbjct: 360 EVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I +R EAIRTA + +DV++VAGKGHE + G K D +++R Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478 Query: 491 EIL 493 +I Sbjct: 479 DIF 481 >gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fragilis YCH46] gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacteroides fragilis YCH46] Length = 485 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 157/489 (32%), Positives = 259/489 (52%), Gaps = 45/489 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR +++G +F+A+ G + DGH +IP A+ +GA AI+ ++ + Sbjct: 22 EITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKGATAILC------EELPVELAE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + A+ YG +P + ++ VTGT+GK+++A+ + + G + Sbjct: 76 GVTYIQVADSEDAVGKAATTFYG-NPSSKLELVGVTGTNGKTTIATLLYNTFRYFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G Sbjct: 132 KVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK + F++ +PK S ++ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNSFSLTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + R LS ++G+ + H + + N ++ + GK F N Sbjct: 251 SKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNL 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L Sbjct: 299 LAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAI-RSPQGYTAIVDYAHTPDALVNVLNA 357 Query: 376 IRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVIITSDNPRFEEPQDIINDML 417 Query: 434 HGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ +K +R EAIRTA + K DV++VAGKGHE + G K D ++ Sbjct: 418 AGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQDI-KGVKHHFDDKEV 476 Query: 489 IREILGLIL 497 ++EI L + Sbjct: 477 LKEIFSLTV 485 >gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gramella forsetii KT0803] Length = 488 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 251/477 (52%), Gaps = 30/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN + DSR +Q +F+AI G+ DGH +I A QGA AIV + + + Sbjct: 24 INNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGALAIVC------EKIPDEVING 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V++T++ L+ ++ Y E + + VTGT+GK+++A+ + + ++G F+ Sbjct: 78 VTYIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIATLLYDLFTKAG---FKC 134 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ ++ TTP I + L ++ GV +E SSHG+DQHR +K Sbjct: 135 GLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVSSHGIDQHRTTALK 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH+ Y + K R F+E LP + A+ DD + E+M + A Sbjct: 195 FEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDE-LPASAFALTNVDDK-NGEIMLQNTKA 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ F K +N + + V+ D + L G F YN L + Sbjct: 253 KKHTYAL---KSFADYKAQILENNFTGLLLKVD--DQELWTKLIGNFNAYNVLAIYAMAD 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 +G+ + +L + +L+ V GRF++V + VDYAHT ++L+ +L+ I +I + Sbjct: 308 LLGLKTLEILRIISELNSVSGRFQYVISEKEKITAIVDYAHTPDALKNVLETINSIRTRN 367 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 +I V GCGGDRD KRP MG IA L+ + T DNPR+EDP+KI E+ G+ P Sbjct: 368 EELITVVGCGGDRDTTKRPKMGHIASALSTKVVFTSDNPRTEDPDKIIEEVEGGVEPQNF 427 Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +K NR +AI+TA +M + D++++AGKGHET V NGE+ D I+ E L Sbjct: 428 KKTMSVTNRKQAIKTACQMAGQNDIILIAGKGHETYQEV-NGERVDFDDLKIVNEFL 483 >gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Eggerthella sp. HGA1] Length = 500 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 252/473 (53%), Gaps = 21/473 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N ++ S +Q G F +VG DGH F AI +GA+ +VV L D Sbjct: 21 DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 ++ +VV +TRK ++ A+ Y HP LA+ G +G + + V+ I + +G Sbjct: 76 ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDLALVGITGTNGKTTTTYLVEHIARVAGKR 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG I A+ + TTP L + + + V++E SSH LD R Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEVSSHALDLDRTWDA 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +F+NL +DH+DYH T +AYF AK RLF + P + +I DD + KE+++R Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A V++ G+ IH V VT+ V G F +PL G+F V N + A G+ Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380 + +G + ++E LE+ +PGR E V + GG ++VDYAHT ++LE L +I +T Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+EDP+ I +I+ G+ Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 F + +R AI AI D +++AGKGHE +V G++ +S D I+ Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482 >gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM 16973] Length = 483 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 255/485 (52%), Gaps = 39/485 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ P I + + +I V+ DSR I G +F+A+ G + DGH FI Sbjct: 1 MKLKELLKGIHPTTI-------IGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117 P+AI QGA AI+ + Q ++ +VV +T A+ YG +P + Sbjct: 54 PKAIEQGASAILCETIPEQQ------KAGVTYIVVSSTEDAAGKVATIFYG-NPSMRLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK++VA+ + + ++ G ++ G ST+ ++ ++ + TTP PI L + Sbjct: 107 VGVTGTNGKTTVATLLYNMFRKFG---YKCGLLSTVCNYIEEEAVPADHTTPDPIALNQL 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L ++ G +V +E SSH + Q R+ G+ G FTNL RDH+DYH+T Y NAK Sbjct: 164 LHRMAESGCEYVFMECSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAF 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ LPK S AI ADD K M N + + + K+ H + + + Sbjct: 224 FDS-LPKSSFAITNADD---KNGMYMVQNCKATIKTYSLRNMADFKAKILECHF-EGMYL 278 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++G++ F G+F V N L G + +G +L + L V GR E + + Sbjct: 279 EIDGREVGVQF--IGKFNVSNLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPI-RSQ 335 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 G VDYAHT ++L +L I + G++I V G GG+RD+GKRP+M + A +D Sbjct: 336 EGVTAVVDYAHTPDALANVLNAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSD 395 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAG 466 I+T DNPR EDP+ I +++ G+ K +R EAIRTA+ M + DV+++AG Sbjct: 396 RVIITSDNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAG 455 Query: 467 KGHET 471 KGHET Sbjct: 456 KGHET 460 >gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium acetobutylicum ATCC 824] gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2; AltName: Full=Meso-A2pm-adding enzyme 2; AltName: Full=Meso-diaminopimelate-adding enzyme 2; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum ATCC 824] gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium acetobutylicum EA 2018] Length = 483 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 260/482 (53%), Gaps = 38/482 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S +S+ ++ ++FV+I G + DGH FI +A GA A+++ +DF +I N Sbjct: 23 IEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIID-----EDFHDSIE-N 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 T ++ V N++ L+ + Y + P N++ VTGT+GK++V +++ + + G S+ Sbjct: 77 TTLVKVKNSKVALACLCNLFY-EEPSRELNLVGVTGTNGKTTVIHYIRDMLEAFGNSTGT 135 Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG T+ +D + TTP + L + L +G + +E +S L +HR+ Sbjct: 136 IG---TLGYELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNAVMEVTSSALMKHRV 192 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D G FTNL +DH+D H T + Y N K++LF+ + P +I DD + E++++ Sbjct: 193 DYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLFK-MCP---VGVINLDDNIAGEIIEK 248 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALV 317 C + G L ++ V+ +V +G +PGEF VYN L Sbjct: 249 GT---CEFFTYGVLTN-ADLTASDMVYKPNSVSFNVHYKGISSKVKVNVPGEFTVYNVLA 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G + +GID +L+ + + V GR E + N I +DYAHT +SLE +L R Sbjct: 305 AIGSLLCLGIDFESILKLVSSIKPVLGRLETI-NNPLNKNIIIDYAHTPDSLEKLLIMAR 363 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 +T+GRII VFGCGGDRD+ KR +MG L+D I+T DNPR E PE I +I G+ Sbjct: 364 EMTNGRIITVFGCGGDRDKSKRGLMGMAVGILSDYCIITSDNPRHEKPEDIIRDIERGMQ 423 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DIIREI 492 + + +R AI+ IE+L ++D+L++AGKGHE I+ G+ K+ D +++ E+ Sbjct: 424 TINSSYEKITDRRCAIKRGIEILKEEDILIIAGKGHEDYQII--GDNKVHFDDREVVNEL 481 Query: 493 LG 494 LG Sbjct: 482 LG 483 >gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 519 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 246/486 (50%), Gaps = 31/486 (6%) Query: 10 DFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 ++ +L+ + I ++ +R I +V+ DSR + G +FVAI G DGH F+ AI QG Sbjct: 27 NYRDLLTEEEILEVRNGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQG 86 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTS 124 A IV + A + L V + R+ L ASR +G HP + +TGT+ Sbjct: 87 AAVIVHQADL------ARYHDDVVYLKVTDCRRLLGHIASRFFG-HPSEKITVTGITGTN 139 Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGV 182 GK+S F+ I + +G ++G + I DN+ T S +A ++ + G Sbjct: 140 GKTSSTYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGC 199 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + +EASS LD RL + FTNL +DH+DYH+T +AYF AK RLF++ E Sbjct: 200 SDLVMEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQT---EK 256 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299 AII DD + ++++ R ++ + Y L V T+ + Sbjct: 257 AAIINRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEK 316 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + G F VYNA+ G IA GID A + L VV GR E + TN Sbjct: 317 ETIFLDVLGRFMVYNAV---GTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNLDFD 373 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I VDYAHT ++LE +LK ++ + GR+I VFGCGGDRD GKRP+MG IA AD +++T Sbjct: 374 -IVVDYAHTPDALENLLKTVKELARGRVIAVFGCGGDRDHGKRPLMGAIAAKEADFSVLT 432 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETV 472 DN RSEDPE I +I + ++ RI EA A+ K DV++ AGKGHE Sbjct: 433 SDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKGHEKT 492 Query: 473 HIVTNG 478 NG Sbjct: 493 ETSRNG 498 >gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp. MP5ACTX8] Length = 504 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 167/475 (35%), Positives = 248/475 (52%), Gaps = 42/475 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR + AG +FVA+ G DG+ FI A+ QGA AI+ SA + A +R Sbjct: 23 VRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAIITDSAETF----AALRER 78 Query: 90 TP---ILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 P + +V++ R+ L+ ++ ++G+ PE L AVTGT+GK++ A ++Q+ + G Sbjct: 79 QPELAVALVEHGRRALAEVSAAVFGR-PEQTLKLSAVTGTNGKTTTAFLLEQMLRSVGRK 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G T I +++ TTP + + G T V +E SSH L+Q R+ G+ Sbjct: 138 SVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVMEMSSHALEQERVWGL 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRA 260 + FTNL +DH+DYH T +AYF AK R+F + LP A+I D Y E+ Sbjct: 198 PVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRV-AVINLDSEYGDEMCHEF 256 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 A +G G + + V++++ FDF+ P L G Sbjct: 257 RGATLMTYGMGEFGNY----------RAENVSLALGDTRFDFVTPEGRIAMHSPLSGRVN 306 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLE 370 V N L A+ +A G+ V E LH VPGRF+ V G+ + G + VDYAHT ++L Sbjct: 307 VENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAHTDDALR 366 Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ R GR I +FGCGGDRD+ KRP MG+ A + +D+ +VT DNPRSE+P Sbjct: 367 NLIALARESVVGHGGRAITLFGCGGDRDKTKRPKMGRAAGEDSDLVVVTSDNPRSEEPMT 426 Query: 428 IRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I E + G+ FI + +R AI AI D++++AGKGHE V I +G Sbjct: 427 IINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKGHEKVQIFADG 481 >gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens DSM 7] Length = 490 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%) Query: 13 ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L+ L P+Q + + I + DSR ++ G +FV I G DGH F +A GA A Sbjct: 5 KLLTYLMTEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 IV + + P+++V +++ LS+ + YG+ + + + +TGT+GK+S Sbjct: 65 IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 V +I +++G + IG T I +F N TTP + L K ++ + V Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVET 172 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241 +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF +L E Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232 Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P A++ ADD S E + AH +L+ G + + K Q+ IS +G Sbjct: 233 KPKRAVLNADDKASAYFERVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279 Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 F+ + P L G F VYN L AA IA G+ + LE+L V GRFE Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFEL 339 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N + + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +AD I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AG Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458 Query: 467 KGHETVHIVTN 477 KGHET + N Sbjct: 459 KGHETYQQIGN 469 >gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens TA208] gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Bacillus amyloliquefaciens LL3] Length = 490 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%) Query: 13 ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L+ L P+Q + + I + DSR ++ G +FV I G DGH F +A GA A Sbjct: 5 KLLTYLMTEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 IV + + P+++V +++ LS+ + YG+ + + + +TGT+GK+S Sbjct: 65 IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 V +I +++G + IG T I +F N TTP + L K ++ + V Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVDT 172 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241 +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF +L E Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232 Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P A++ ADD S E + AH +L+ G + + K Q+ IS +G Sbjct: 233 KPKRAVLNADDKASAYFERVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279 Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 F+ + P L G F VYN L AA IA G+ + LE+L V GRFE Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFEL 339 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N + + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +AD I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AG Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458 Query: 467 KGHETVHIVTN 477 KGHET + N Sbjct: 459 KGHETYQQIGN 469 >gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 496 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 168/470 (35%), Positives = 236/470 (50%), Gaps = 24/470 (5%) Query: 25 WRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-- 80 W E ++ +++ DSR +QAG +FVA+ G++ DG FIP AI QGA AI+++ A Q Sbjct: 14 WVEELTELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGA-AIILAEADEDQPE 72 Query: 81 --------DFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 F+ + ++ V N K LS A Y H + +TGT+GK++ A Sbjct: 73 AELDSKFAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTA 132 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q G S +G + Q+ TT S I + + L+ G ++E Sbjct: 133 QLLAQWHNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEV 192 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R + + FTNL RDH+DYH T + Y AK RLF EL K +I AD Sbjct: 193 SSHGLAQFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQ--VINAD 250 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLP 307 D +E + + NA + +K Q +I+ + + + L Sbjct: 251 DEIGREWLTQLPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLI 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A +A+G D +++ L V GR E + T + VDYAHT + Sbjct: 311 GAFNVNNLLTAFAGLLALGFDIQDLIKTSPNLVGVAGRMECI-TAPNKPMVIVDYAHTPD 369 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L+ R G + +FGCGGDRD GKRP+M IA L D I TDDNPR+ED +K Sbjct: 370 ALEKALQAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQK 429 Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I A+I+ G P I NR EAI+TAIE DV+++AGKGHE I+ Sbjct: 430 IMADIVKGFSKPQQIIH-NREEAIKTAIEQAKATDVILIAGKGHENYQII 478 >gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Robiginitalea biformata HTCC2501] Length = 489 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 251/477 (52%), Gaps = 31/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR A FVAI G + DGH FI A+ G A++ ++ + Sbjct: 24 IESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKNGVRAVIC------EELPQDLADG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +T+ L++ AS YG N+ + VTGT+GK++V++ + Q+ +++G +++ Sbjct: 78 VTYVEVADTQLALAVMASNYYGNPSANLRLVGVTGTNGKTTVSTLLYQLFKKAG---YKV 134 Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G STI D RLTTP + + K LS ++ GV +E SSHG+ Q R +G+ Sbjct: 135 GLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEAGVEFCFMEVSSHGIAQRRTEGLV 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH+ Y + K +LF+ LPK + A+ ADD K + N Sbjct: 195 FEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDG-LPKSAFALTNADD---KNGLFMIQNT 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R L+ + ++ Q+ ++ +D + L G+F YN L Sbjct: 251 RARKLTYALRSYADFRAQILEQQLDGQL---LKIQDNEVWTKLIGQFNAYNLLAIYATAS 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ +L+ L L V GRF++ + R I VDYAHT ++L+ +L I + +G Sbjct: 308 LLGLGQLEILQLLSGLQTVDGRFQYFVSKQRITAI-VDYAHTPDALKNVLVTINALRTGN 366 Query: 384 --IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 +I V GCGG+RD+ KRP+MG IA D+++ AI T DNPR E P I AE+ G+ P + Sbjct: 367 ESVITVVGCGGERDKSKRPVMGHIASDMSETAIFTSDNPRREPPRDIIAEMEAGVEPQNV 426 Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R +AIRTA +M D++++AGKGHET + G ++ D ++ E+L Sbjct: 427 RKVLVIEDREQAIRTACKMAGGGDIILIAGKGHETYQEIA-GVRRDFDDYKLVSEVL 482 >gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parasuis SH0165] gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis SH0165] Length = 496 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 174/496 (35%), Positives = 253/496 (51%), Gaps = 23/496 (4%) Query: 18 LSIFPM--QWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 LS FP W E +++N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ Sbjct: 5 LSFFPELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64 Query: 75 SAYSLQ--DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + +Q F+ ++T +L V N K LS A YG E ++ +TGT+GK++ Sbjct: 65 ADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A Q G S +G + Q+ TT S + + L+ G ++E Sbjct: 125 AQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R + + FTNL RDH+DYH T + Y AK RLF EL K+ +I A Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305 DD ++ + + A +Q + K A+ Q TI E + + Sbjct: 243 DDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSR 302 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362 L G F V N L A +A+G D ++E L+ V GR E + + + VDY Sbjct: 303 LIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDY 362 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L R G + VFGCGGDRD GKRP+M +IA LAD IVTDDNPR+ Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRT 422 Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP+ I +++ G P ++ + R AI AI +DV+++AGKGHE I+ G Sbjct: 423 EDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480 Query: 480 KKMSV-DCDIIREILG 494 KK D + R+ LG Sbjct: 481 KKYHFSDQEWARKFLG 496 >gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. D22] Length = 482 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 254/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R L ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM 2243] Length = 500 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 252/473 (53%), Gaps = 21/473 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N ++ S +Q G F +VG DGH F AI +GA+ +VV L D Sbjct: 21 DDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGAKVLVVERKVYLAD----- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 ++ +VV +TRK ++ A+ Y HP +A+ G +G + + V+ I + +G Sbjct: 76 ATDVTEIVVKDTRKAMAAAAANFY-DHPSKDIALVGITGTNGKTTTTYLVEHIARVAGKR 134 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG I A+ + TTP L + + + V++E SSH LD R Sbjct: 135 TGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEVSSHALDLDRTWDA 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +F+NL +DH+DYH T +AYF AK RLF + P + +I DD + KE+++R Sbjct: 195 AFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKR--VICIDDKWGKELLRRCSV 252 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A V++ G+ IH V VT+ V G F +PL G+F V N + A G+ Sbjct: 253 AEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVGKFNVENVMCAFGI 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTIT 380 + +G + ++E LE+ +PGR E V + GG ++VDYAHT ++LE L +I +T Sbjct: 313 GLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPDALEKALASIMALT 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 GR + VFGCGGDRD KRPIMGK AL AD A+VT DNPR+EDP+ I +I+ G+ Sbjct: 373 PGRTVCVFGCGGDRDASKRPIMGKAAL-AADHAVVTSDNPRTEDPQAIIEDIVSGMSSGA 431 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 F + +R AI AI D +++AGKGHE +V G++ +S D I+ Sbjct: 432 GRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLV--GDQVLSFDDRIV 482 >gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Dickeya dadantii 3937] Length = 494 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 174/485 (35%), Positives = 251/485 (51%), Gaps = 23/485 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG+K DG +IPQAIAQG A+V + + D + T Sbjct: 19 ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQADEATPDGTLTE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ ++N + LS A R Y + P L + G +G + + Q + Q S Sbjct: 79 MHGVPVIYLENLNQRLSALAGRFY-RQPSASLQLIGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + + LS L QG ++E SSHGL QHR Sbjct: 134 LGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + A FTNL RDH+DYH Y AK RLF E + II ADD + ++ Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAE--HQVGQKIINADDEVGRRWLQ 251 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315 R +A ++ H K I ++ T+ + + L G F V N Sbjct: 252 RLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSRLMGAFNVSNL 311 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +++G +++ L V GR E + R + VDYAHT ++LE L Sbjct: 312 LLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRP-TVVVDYAHTPDALEKALAA 370 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSEDP+ I A+I+ G Sbjct: 371 ARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVADILSG 430 Query: 436 I--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G ++ R EA+ +A+ DV++VAGKGHE +V N E+ D + + Sbjct: 431 LLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRITVARL 489 Query: 493 LGLIL 497 LG+I+ Sbjct: 490 LGVIV 494 >gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15] Length = 485 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 247/480 (51%), Gaps = 28/480 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR + +G F+A+ G + ++ +AIA GA I++ + Q T Sbjct: 15 IHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQ---QAGECTEHHG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ V R + A R + +HP ++ VTGT+GK+SV +V Q+ + +G Sbjct: 72 ALIVPVAGLRSLVGRIADRFF-EHPSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPCGI 130 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + Q TTP + + + LS + Q +E SSH LDQ R+D + + Sbjct: 131 LGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSMT 190 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH + +AY AK +LF EEL ++I DD + +++ ++ Sbjct: 191 GAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREEL----HFSVINFDDPFGRQLFEQLDGK 246 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV ++ + + L++ + + E F PL G F N L A Sbjct: 247 CDRVRYSLHEAQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + +G+ V + + +L PGR E FVG N G R+ VDYAHT ++L L +R + Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERFVGAN--GVRVVVDYAHTPDALANALTALRPHVT 364 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 G ++ VFGCGGDRD GKRP M + A LAD +VTDDNPRSEDPE I AE H + GF + Sbjct: 365 GELVCVFGCGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETI-AE--HILAGFTD 421 Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R EAIR+ I DV+++AGKGHE + G+K D + +R +L L Sbjct: 422 AARVSVIHDRAEAIRSTIRSATPNDVVLIAGKGHEAYQEIA-GQKYPFSDAEQVRHVLKL 480 >gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Verrucomicrobium spinosum DSM 4136] Length = 507 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 158/457 (34%), Positives = 240/457 (52%), Gaps = 31/457 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G++F A+ G K DGH FIP+A+A+GA AIV +A +D S T Sbjct: 23 EVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAVAIVAETAPP-EDCSVTW-- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVA-------SFVQQICQ 138 L V N R L+ A+ Y HP +AV TGT+GK++ A + + C Sbjct: 80 ----LHVKNARVALAEMAA-AYKGHPARSMAVGGVTGTNGKTTTAFLLHHLLNHAHRRCG 134 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +G ++ TTP + L LS + +G V++E SSH +DQHR Sbjct: 135 LLGTVVYDVGGDLKPATH------TTPESLELQGLLSEMRDRGCVAVAMEVSSHAIDQHR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVM 257 G+ A FTNL +DH+DYH T + YF AK +LF S +I DD + + ++ Sbjct: 189 THGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVDDIWGRRLV 248 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNA 315 AH +++ G G + V ++ + +E K L +P G+F VYN+ Sbjct: 249 D-AHKEHPGLVTYGL-GVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQFNVYNS 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +G + ++ ++ +PGR E V ++ ++VDYAHT + L L Sbjct: 307 LAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSFHVFVDYAHTPDGLVNALST 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R + RII VFGCGGDRD+ KRP+M + + +DI+I+T DNPR+EDP+ I + G Sbjct: 367 ARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSDNPRTEDPQAIMDDARKG 426 Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R EAI TAI+ + D++V+AGKGHE Sbjct: 427 FTRSAHALIADRKEAIHTAIKGAREGDIVVIAGKGHE 463 >gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Verrucomicrobiae bacterium DG1235] Length = 523 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 164/500 (32%), Positives = 253/500 (50%), Gaps = 63/500 (12%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L+ K+F +L+ + +I+ ++ DSR + G +F A+ G K DG+ F+ Sbjct: 31 KLSSLLGKEFEKLLKGQP-------DPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVD 83 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NIL 118 +AI++GA A++ S A + + L VDN R L+ SR + HP+ +++ Sbjct: 84 EAISRGAVAVISSQARRFRS------AKVAYLTVDNPRLVLAA-VSRAFYDHPDKDLSLV 136 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------TISSFAQDNRLTTPSPIYLAK 172 +TGT+GK++VA V+QI G +G T+ SF TTP L Sbjct: 137 GITGTNGKTTVAYLVKQILANLGQRYGCLGTVGYDLVRRTVPSFR-----TTPESHDLCG 191 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 LS + +E SSHG+DQ R+ G+ G+F NL RDH+DYHQ ++Y+ K R Sbjct: 192 LLSQMRDFECRGAVMEVSSHGIDQFRVSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRR 251 Query: 233 LFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F E P A++ DD Y K ++ +L+ G + A ++ Sbjct: 252 FFNGESGPLPKVAVVNIDDPYGKRLVSEIPEQ-VAILTFG--------ETEGAAFRASEI 302 Query: 292 TISVEGKDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 +S EG +F F PL G++ V N L A +C +G++ +E L+ + Sbjct: 303 ELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTLAALTICSGLGLNIENCIEDLDSFPGI 362 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR + V + + VDYAHT ++L+ L ++ +T G++ VVFGCGG+RD+GKRP M Sbjct: 363 PGRMQKV-EAGQAATVLVDYAHTEDALQNALSMLQGVTVGKLRVVFGCGGNRDRGKRPAM 421 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEI---------IHGIPGFIEKGNRIEAIRTAI 453 K+A LAD A T DNPR+E E I A++ +H +P +R AI A+ Sbjct: 422 TKVANTLADEAWATSDNPRNEQVEDIFADMKEGLVDPERVHFVP------DRRRAIELAL 475 Query: 454 EMLNKQDVLVVAGKGHETVH 473 E + D L++AGKGHE+ Sbjct: 476 EASHAGDCLLIAGKGHESFQ 495 >gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter algicola DG893] Length = 494 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 251/477 (52%), Gaps = 22/477 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++AG FVA+ G + +I QAI+ GA I++ SA + + Sbjct: 24 IHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATVILLESAQPDECYE---HEG 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I+ V R L A R + +HP ++ VTGT+GK+SV+ ++ + Q +G Sbjct: 81 VLIVPVTALRAHLGKIADRFF-EHPSQRLRLIGVTGTNGKTSVSHYIATLLQETGTPCGV 139 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + Q+ TTP + + + LS + +QG ++E SSH L+Q R+D + + Sbjct: 140 IGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAMEVSSHALEQGRVDNLTMT 199 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH + AY AK RLF EEL A+I DD + +++ ++ Sbjct: 200 GAVFTNLTRDHLDYHGSMDAYGAAKARLFHREEL----HFAVINFDDPFGRQLYEKLDGK 255 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV ++ + + L + + ++ F+ + G F V N L A Sbjct: 256 CDRVRYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSARVLGSFNVSNILAAMASV 315 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +++G+ V + +E+L PGR E F G+N R+ VDYAHT ++L L +R Sbjct: 316 LSLGVPVERVQQAVERLSPPPGRLEPFAGSNDV--RVVVDYAHTPDALNSALAALRPHVG 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439 GR+ VFGCGGDRD GKRP M + A AD+ IVTDDNPRSEDP+ I ++I+ G P Sbjct: 374 GRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDPDAITSDIVAGFEHPEQ 433 Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 I +R EAIR AI D+++VAGKGHE V G++ D + +R L L Sbjct: 434 IAVIHDRAEAIRQAIHSAVAGDIVLVAGKGHEAWQEVA-GQRFPFSDAEQVRHALSL 489 >gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus parainfluenzae ATCC 33392] Length = 489 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 153/458 (33%), Positives = 242/458 (52%), Gaps = 18/458 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G++ D F+PQAI+ GA A+++ + + S ++N P++ Sbjct: 24 DSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQWQNNVPVIRY 83 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A + YG E ++ VTGT+GK++V+ + Q G + +G Sbjct: 84 YHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKAAVMGTIGNG 143 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + ++ + TT S + + L+ +G S+E SSHGL Q+R++ +K + FTNL Sbjct: 144 LLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYRVEALKFKSAIFTNL 203 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVLS 269 RDH+DYH+T + Y AK R F +L + I+ ADD + N+ C Sbjct: 204 SRDHLDYHETMEKYAEAKKRFFVDLASELQ--ILNADDPIGAAWLNELPNSIAVSCHPNF 261 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 ++++ ++ H + + PL G F V N L+A + +A+G Sbjct: 262 HATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLATAVLLALGYSF 321 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 ++ + +L V GR E + + G+ + VDYAHT ++LE L + R G++ + Sbjct: 322 DDLIRTVSQLKGVNGRMELI---KKAGKPTVIVDYAHTPDALEKALNSARQHCKGKLWCI 378 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---N 444 FGCGGDRD GKRP+M K A AD+ IVT DNPR+EDP KI A+I+ G + G + Sbjct: 379 FGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSRMEDVGVIPD 438 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 R EAI+ IE + DV+V+AGKGHE I+ G+K + Sbjct: 439 REEAIKFTIENAVEDDVIVIAGKGHENYQII--GDKTL 474 >gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromobacterium violaceum ATCC 12472] gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase [Chromobacterium violaceum ATCC 12472] Length = 493 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 163/493 (33%), Positives = 249/493 (50%), Gaps = 30/493 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P L+ QL + I V +DSR + G +F+A G DG FIP A+ +GA A+ Sbjct: 13 PALLQQLGL--------PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV 129 + A F+ P L V N R+ + A+ + G + ++ +TGT+GK+S+ Sbjct: 65 LWDEA---DGFAWKAEWQAPNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTNGKTSI 121 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + ++ Q G + IG + TTP P+ + + L+ QG V++E Sbjct: 122 SHWLAQAFSLLGQKAALIGTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTME 181 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGLDQ R++G++ FTNL RDH+DYH + +AY +K +LF A+I A Sbjct: 182 VSSHGLDQFRVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLF--FWEGLKHAVINA 239 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 DDA+ +++ RV++ G + + + A Q+T++ D L G Sbjct: 240 DDAFGRQLAAGIDPKQTRVVTYGLEQGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVG 299 Query: 309 EFQVYNALVA-AGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 F N L A LC+ G+ D+A V+ ++ GR + VG + + +DYAH Sbjct: 300 RFNAANLLACLATLCVN-GVSLQDAAAVMARIQPAR---GRMQSVG-GAHEPLVVIDYAH 354 Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 T ++LE L + I GR+ VFGCGGDRD GKRP+MG IA AD+A++T DNPRS Sbjct: 355 TPDALEKALATLSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRS 414 Query: 423 EDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 EDP+ I +++ G+ + +R AI A+ DV++VAGKGHE + G K Sbjct: 415 EDPQAIIRDVLAGMDAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEEYQDIA-GVK 473 Query: 481 KMSVDCDIIREIL 493 + D + E L Sbjct: 474 RPFSDFRVAEEAL 486 >gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-003] Length = 491 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M++A A + + F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 +V Sbjct: 464 YQVV 467 >gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis 29755] Length = 496 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 173/496 (34%), Positives = 253/496 (51%), Gaps = 23/496 (4%) Query: 18 LSIFPM--QWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 LS FP W E +++N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA ++ Sbjct: 5 LSFFPELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAE 64 Query: 75 SAYSLQ--DFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + +Q F+ ++T +L V N K LS A YG E ++ +TGT+GK++ Sbjct: 65 ADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A Q G S +G + Q+ TT S + + L+ G ++E Sbjct: 125 AQLFSQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R + + FTNL RDH+DYH T + Y AK RLF EL K+ +I A Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305 DD ++ + + A +Q + K A+ Q TI E + + Sbjct: 243 DDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSR 302 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362 L G F V N L A +A+G D ++E L+ V GR E + + + VDY Sbjct: 303 LIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDY 362 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L R G + VFGCGGDRD GKRP+M +IA LAD I+TDDNPR+ Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRT 422 Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP+ I +++ G P ++ + R AI AI +DV+++AGKGHE I+ G Sbjct: 423 EDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480 Query: 480 KKMSV-DCDIIREILG 494 KK D + R+ LG Sbjct: 481 KKYHFSDQEWARKFLG 496 >gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus weihenstephanensis KBAB4] gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus weihenstephanensis KBAB4] Length = 491 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 255/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ E +I + +DSR ++ G +F+ + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y NAK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I+ +DD ++E M+ + V++ G I + + T+ + + Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I ++++ + G + +R EAIR+AI + +D++++AGKGHET I+ Sbjct: 410 RSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466 >gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 487 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 241/468 (51%), Gaps = 25/468 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ S ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSSVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDLLGQHCGIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R I TNL RDH+DYH T +AY AK +LF P + +I DD Sbjct: 179 HGLDQGRATAIAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDE 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +++ H + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRKLATLKHESRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHF-LRSALLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G S+ + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGASKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPR+E P +I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQI 412 Query: 429 RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I PGF+ R +AI I + DV+V+AGKGHE Sbjct: 413 FDDI---RPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKGHE 457 >gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 496 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 248/482 (51%), Gaps = 55/482 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I + DSR + G +F IVG D H FIP GA A++ A S + Sbjct: 22 QTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGARAVLTERA------SVDV 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 + +L V N K L Y +P ++ +TGT+GK++ + V+ I + +G Sbjct: 76 PAGVAVLYVLNLEKALDTIVPFFY-DYPARVMRVVGITGTNGKTTTSYLVRAILRHAG-- 132 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++G TI + +D L TTP I L + L+ + ++G+ V +E SSH L R+ Sbjct: 133 -HRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEVSSHALALGRV 191 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKE 255 GI+ FTNL +DH+D+H+T + Y AK LFE + + A++ ADDA S+ Sbjct: 192 AGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTAVLNADDAASET 251 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LFPL--- 306 + RA+ C +++ G H + A Q V ++ +G + LF L Sbjct: 252 M--RAYTR-CPIITYGVD----HPADLTA----QDVQLACDGMELTLMHGGKRLFHLHTG 300 Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362 G F V+N L A G +A + + + L VPGRFE V R G+ + VDY Sbjct: 301 ITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELV----REGQDFAVIVDY 356 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + +E +L+ R +T G II VFGCGGDRD+ KRPIMG+I ++ADIAI+T DNPR+ Sbjct: 357 AHTPDGMENVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPRT 416 Query: 423 EDPEKIRAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP I E+ G+ P +K +R AI AI D +V+ GKGHET I+ Sbjct: 417 EDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKGHETYQILK 476 Query: 477 NG 478 +G Sbjct: 477 DG 478 >gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D1] gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_1_22] gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CC 2a] gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides xylanisolvens SD CC 1b] Length = 482 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R L ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPLGVTAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ I +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus minor NM305] Length = 496 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 244/482 (50%), Gaps = 22/482 (4%) Query: 18 LSIFPM--QWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 LS FP W E K +N+++ DSR ++ G +FVA+ G++ DG FI +AI QGA+ ++ Sbjct: 5 LSFFPALESWAELKTLNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAE 64 Query: 75 SAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + +Q + S +L V N K LS A YG E ++ +TGT+GK++ Sbjct: 65 ADDDVQAVRLAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTT 124 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 A Q G S +G + Q+ TT S + + + L+ G ++E Sbjct: 125 AQLFAQWRNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAME 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSHGL Q+R + + FTNL RDH+DYH T + Y AK RLF EL K+ +I A Sbjct: 185 VSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQ--VINA 242 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFP 305 DD +E + + A +Q + K A+ Q TI E + + Sbjct: 243 DDEIGREWLAKLPEAVAVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSR 302 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVDY 362 L G F V N L A +A+ D ++E L+ V GR E + + + VDY Sbjct: 303 LIGAFNVSNLLTAFAGLLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDY 362 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L R G + VFGCGGDRD GKRP+M +IA LAD IVTDDNPR+ Sbjct: 363 AHTPDALEKALDAARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRT 422 Query: 423 EDPEKIRAEIIHGI--PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP+ I +I+ G P ++ + R AI AI +DV+++AGKGHE I+ G Sbjct: 423 EDPDVIFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQII--GT 480 Query: 480 KK 481 KK Sbjct: 481 KK 482 >gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes EGD-e] gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-561] gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e] Length = 491 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M++A A + + F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 +V Sbjct: 464 YQVV 467 >gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella timonensis CRIS 5C-B1] Length = 483 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 258/477 (54%), Gaps = 32/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V+ DSR I+ G +FVAI G + DGH +I +AI GA A++ A S+ Sbjct: 23 ISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVAVLCEKA------PKEPLSD 76 Query: 90 TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +VV +T + A+R YG KH + ++ VTGT+GK+++A+ + + ++ G + Sbjct: 77 ITYIVVTSTEDAVGKVATRFYGDPSKHLK-LIGVTGTNGKTTIATLLYNMFRKLG---HR 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ +D ++ TTP PI L + L+ + Q +V +E SSH + Q R+ G+ Sbjct: 133 CGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSSHAIAQKRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL RDH+DYH+T + Y NAK F+ LPK + AI ADD + VM + Sbjct: 193 NFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDH-LPKSAFAITNADDK-NGMVMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + SV F C Q + + ++G++ F G+F V N L Sbjct: 251 ATVKTYSVRTAADFKARIIECHF---QGMYLEIDGQEVGVQF--IGKFNVSNLLAVYATA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381 +G +L + LH V GR + + + +G VDYAHT ++L+ +L I + Sbjct: 306 RMLGKQREEILIAMSTLHSVNGRMDTLHS-PQGFTAVVDYAHTPDALKNVLLAIHEVDGK 364 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 G +I V G GG+RD+GKRP+M K A+ L+D I+T DNPR E+P+ I +++ G+ Sbjct: 365 GHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQDIINDMLAGLDAQDM 424 Query: 442 KG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R EAIRTA + +K DV++VAGKGHET V G K D +++ EI Sbjct: 425 KKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEV-KGVKHHFDDKEVLAEIF 480 >gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 3_1_33FAA] Length = 484 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 256/483 (53%), Gaps = 39/483 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I+ ++ DSR I+ IF+A+ G + DGH +I +AI +GA +V ++ T+ Sbjct: 21 QEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKGARTVVC------ENLPETLI 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V++T + A+ YG + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 ENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFRKFG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ + + TTP PI L K L ++ +G + +E SSH + Q R+ G Sbjct: 132 KTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFMEVSSHSVAQKRIGG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVM 257 +K G FTNL RDH+DYH+T + Y AK F+ LPK + A+ DD ++ Sbjct: 192 LKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDS-LPKTAFALTNLDDKNGLVMTQNTK 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + H R LS ++GK + + + V ++V+ G F N L Sbjct: 251 AKVHTYSLRSLS-DFKGKVLEDGFEGMLLDINNVEVNVQ---------FIGRFNASNLLA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G +G + VL L L V GRF+ + + +G VDYAHT ++LE +L I Sbjct: 301 VYGTACLLGKKTEEVLLALSTLRPVAGRFDSL-RSPKGYTAIVDYAHTPDALENVLNAIH 359 Query: 378 TITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +G+ +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P++I +++ G Sbjct: 360 EVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVIITSDNPRFEEPQEIINDMLAG 419 Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I +R EAIRTA + +DV++VAGKGHE + G K D +++R Sbjct: 420 LTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGHENYQEI-KGIKHHFDDKEVLR 478 Query: 491 EIL 493 +I Sbjct: 479 DIF 481 >gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 487 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 247/472 (52%), Gaps = 24/472 (5%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 IF + I E++ DSR+++AG +F+A+ G + DG I A+ +GA A+ AY + Sbjct: 8 IFAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAV----AYEV 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 Q + ++ P++ V LS A R YG N++ VTGT+GK+SV V Q Sbjct: 64 QGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQAL 123 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G A ++ L TTP+PI + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGQHCGIVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + TNL RDH+DYH T QAY AK +LF +I DD + +++ Sbjct: 184 GRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFA--WNDLKCRVINLDDEFGRQL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S+ G ++++++ + T+ + L G F + N L Sbjct: 242 AAEKRESRLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVL 301 Query: 317 VAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A G + G+D AL +L+ L KL GR + +G ++ + VDYAHT ++LE +L Sbjct: 302 AAIGALL--GLDYALDEILKVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDALEKVLT 358 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R G+++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPR+EDP++I +I Sbjct: 359 ALRPHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDDI-- 416 Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 GF+ N R +AI I + DV+V+AGKGHE + NGE+ Sbjct: 417 -RAGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEI-NGER 466 >gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes Finland 1988] gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165] gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes J0161] gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900] gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165] gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900] gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578] gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923] gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes J2818] Length = 491 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M++A A + + F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 +V Sbjct: 464 YQVV 467 >gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Maribacter sp. HTCC2170] Length = 487 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 250/476 (52%), Gaps = 41/476 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ +FVAI G DGH FI +AI GA IV + + + + V Sbjct: 30 DSRKVKLDDVFVAIKGTLTDGHKFIEKAIDSGAVCIVCET------MPEQLVNGVTYVEV 83 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 D+ K L++ AS Y +N+ + +TGT+GK++++S + Q+ +++G F++G STI Sbjct: 84 DSGNKALAIMASNYYDNPSKNLKLVGITGTNGKTTISSLLYQLFKKAG---FKVGLISTI 140 Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 D TTP + + + L ++ +GV +E SSHG+ Q R +G+ F Sbjct: 141 KIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFMEVSSHGIHQKRTEGLVFEGAIF 200 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL DH+DYH+T Y + K LF++ LPK + A+ DD K + N R Sbjct: 201 TNLTHDHLDYHKTFAEYRDTKKSLFDK-LPKNAFALTNVDD---KNGLVMLQNTAAR--- 253 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIA 324 KF + K A + Q + +G+ D + L G F YN L Sbjct: 254 -----KFTYALKSYADYRAQILENQFDGQLLKVDDDELWTKLIGHFNAYNVLAIYATADL 308 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-- 382 +G++ L L +L V GRF++ + + I VDYAHT ++L+ +L+ I T+ +G Sbjct: 309 LGLEKLETLRLLSELDNVDGRFQYYISKEKITAI-VDYAHTPDALKNVLETIGTLRTGNE 367 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIE 441 +I V GCGGDRD+ KRP+MG IA +++ I T DNPR+E P I E+ G+ P ++ Sbjct: 368 NVITVVGCGGDRDKSKRPVMGNIASQMSNKTIFTSDNPRTESPSVIIEEMEAGVEPQNVK 427 Query: 442 K----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K NR +AI+TA ++ D+++VAGKGHET TNG++ D II ++L Sbjct: 428 KILSIENREQAIKTACQLATANDIILVAGKGHETYQ-ETNGKRIDFDDFKIITDVL 482 >gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxidans DMS010] gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga thiooxydans DMS010] Length = 513 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 158/483 (32%), Positives = 260/483 (53%), Gaps = 16/483 (3%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ +E + ++S DSR + AG +F+A+ ++ + + QA+ +GA A+++ + L Sbjct: 23 VELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQKHLHQALDKGAFAVLIDADKPLTQT 82 Query: 83 SATIRSNTPILV--VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 + + + V N + A+R Y + ++ ++AVTGT+GK+SV+ F+ Q+ + Sbjct: 83 ETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIAVTGTNGKTSVSQFIAQVLE 142 Query: 139 RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G IG S + +TTP P+ + + L+ +G +V +EASSH L+Q Sbjct: 143 ADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYVVLEASSHALEQG 202 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL+ + + TNL RDH+DYH T Y AK RLFE + S A+I A D++ + +M Sbjct: 203 RLNSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFE--MGSVSRAVINACDSFGRTLM 260 Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A + ++L+ + + + + Q +++ G+ P+ G F V NAL Sbjct: 261 N-ALRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLPVLGRFNVDNAL 319 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G+ ++IG + + L + V GR E G + + + +DYAHT ++LE L+ + Sbjct: 320 ATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQ-PMLVIDYAHTPDALEQALRTL 378 Query: 377 R--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G++ VFGCGGDRD+GKRP+MGKIA AD I+TDDNPR+ED + I +I+ Sbjct: 379 RGHLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEIEADEIIITDDNPRTEDHQAIAEDILA 438 Query: 435 GI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G P I + +R AI AI D+++VAGKGHE + + + S D II+E Sbjct: 439 GCQQPHAIRVELDRKVAISYAISHAAPNDIVLVAGKGHEAYQEIDHIKFPFS-DTVIIKE 497 Query: 492 ILG 494 +LG Sbjct: 498 MLG 500 >gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens WH6] Length = 487 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 171/478 (35%), Positives = 249/478 (52%), Gaps = 36/478 (7%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ AY + Sbjct: 8 IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAV----AYEV 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 + ++ P++ V K LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 64 DGATVLPITDVPLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQAL 123 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G T Q TTP+PI + L+ L G V++E SSHGLDQ Sbjct: 124 DLLGQHCGIVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSK 254 R+ + TNL RDH+DYH T +AY AK +LF +L + ++ DD + + Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCR----VVNLDDEFGR 239 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQV 312 + A ++ R++S Q +L A N + V T+ + L G F + Sbjct: 240 HLA--AQDSESRLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNL 297 Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367 N L A G + G+D AL +L L KL GR + +G GG + VDYAHT + Sbjct: 298 SNVLAAIGALL--GLDYALDEILNVLPKLEGPAGRMQRLG----GGEQPLVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R G+++ +FGCGGDRD+GKRP+M +I LAD +VTDDNPR+EDP + Sbjct: 352 ALEKVLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQ 411 Query: 428 IRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 I +I G F+ R AI I + DV+V+AGKGHE + NGE+ Sbjct: 412 IFDDIRAGFKDASKAAFV--AGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGER 466 >gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae Cit 7] Length = 487 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 244/478 (51%), Gaps = 24/478 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+AI G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDT 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELTGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD A VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASI 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I G FIE R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 413 FDDIRPGFAAVDKVRFIE--GRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467 >gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 489 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 256/479 (53%), Gaps = 30/479 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR ++ G ++VAI G + DGH FI +A+++GA +V SL D + + Sbjct: 17 IRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPD 72 Query: 90 TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V + R+ S ++R+YG +H ++ VTGT+GK++ ++ + + +G+ + Sbjct: 73 VPYVRVTSARRAASALSNRVYGFPSRH-LTVVGVTGTNGKTTSVHWLTHVLRFAGM---R 128 Query: 147 IGPTSTISSFAQDNRLTTPSPIY------LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +G S++ F + T P+ + L +AL + G TH +E SSHG+ QHR Sbjct: 129 VGMLSSV--FNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTS 186 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + FTNL R+H+D+H + + Y AK RLF L ++ AI+ DD Y+ +VM A Sbjct: 187 DVDFDLAIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYA-DVM--A 243 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319 N +++ G + + + V + +V+I + G+ + + PG + +YN L Sbjct: 244 ENCVAPIVTYGVRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVV 303 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +G+ + + + L +PGR + G + VDYAHT ++L IL R Sbjct: 304 AAAYVLGVSADDIAGVIPTLPTIPGRMHVI-RPEHGPTVIVDYAHTPDALRQILSTARQW 362 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 TSGR+ +VFG G+RD+GKRP MG IA +AD ++T D+ SEDPE+I EI+ G Sbjct: 363 TSGRVWLVFGGRGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIANEILAGAQRV 422 Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI A+ N +DV+++ G+GHE+ +V G + D D++RE L Sbjct: 423 HRARCDVVLDRAQAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVREAL 480 >gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine gamma proteobacterium HTCC2148] Length = 488 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 164/475 (34%), Positives = 247/475 (52%), Gaps = 47/475 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I+ V DSR ++ G +F+A+ G DG FI QA+A GA AIV + F + Sbjct: 19 ETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVA--GFVEAL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 + P++ + ++ ASR + K P +++ VTGT+GK++ + V Q+ + G S Sbjct: 77 Q--VPLVEMPELQQESGFIASRFH-KEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKS 133 Query: 144 SFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG S AQ TTP + L + L+ QGV S+E SSH + Q R++G Sbjct: 134 CGVIGTLGASLNEDVAQGGN-TTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNG 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL DH+DYH + +AY AK+ LF K A++ DD + V Sbjct: 193 VGFETAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKH--ALVNLDDEFGARV----- 245 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFP 305 C V+ G Q + + Q + VE DF +F+ P Sbjct: 246 ---CDVVEPGVQ-------LITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSP 295 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG+F + N A G A VL+++ +L VPGR + + +N+ G ++ +DYAHT Sbjct: 296 LPGDFNLANLAAAVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSL-SNTLGLQVIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L +R G+++VVFGCGGDRD+ KR +MG++A +AD +VT DNPR EDP Sbjct: 355 PDALEQVLTALRLHVDGQLVVVFGCGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDP 414 Query: 426 EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A+I G G ++ + +R AI+ A+ D +V+AGKGHE +V +GE Sbjct: 415 AAILADIEVGCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKGHEDYQVV-DGE 468 >gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Fusobacterium varium ATCC 27725] Length = 483 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 254/477 (53%), Gaps = 44/477 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E + + DSR I+ G IFVA+ G DGH +I QA+ GA+ I+VS Sbjct: 18 KEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKK--------- 68 Query: 86 IRSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I + P+ + + + R+ L + AS Y P+ L + G +G + + I S L Sbjct: 69 IEAVFPVKYIWIKDLRRKLGVLASNFYN-WPQKKLKIIGITGTNGKTTTTYLI--ESILG 125 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S + T+ D + TTP + + K +G+ ++ +E SSH L R+ Sbjct: 126 SDKTARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALALGRV 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257 D ++ FTNL DH+D+H+T + YF AK +LF ++ K E +I DD Y K + Sbjct: 186 DMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFT-MMKKGCEKNCVINIDDLYGKRLS 244 Query: 258 KR-------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 HN G RV +GK + + Q+V I+++ + G + Sbjct: 245 SEFGGISYGMHNEG-RV-----RGKILEFH-----GDGQEVEINIDNFSTKIKLAILGRY 293 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 VYN L A + + +GI+ ++L+ +++L PGR+E V + + VDY+HT ++LE Sbjct: 294 NVYNVLGALSIALLLGIERDIILDKIKELKGAPGRYELVNC-GQDFTVIVDYSHTGDALE 352 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 ILK+I + G+II VFGCGGDRD KR +MG+IA L+DIAIVT DNPR+EDP KI Sbjct: 353 NILKSINELKKGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVE 412 Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ G+ G I + +R AI A+++ +D++++AGKGHET I+ G KK+ D Sbjct: 413 QVLEGMKGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQIL--GRKKIHFD 467 >gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 10403S] Length = 491 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 242/484 (50%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M++A A + + F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-071] Length = 491 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 238/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243 SSH L Q R+ G F NL +DH+DYH T Y NAK LF +L Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M+ A A + Q F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I + LE + V GRFE V + Sbjct: 285 TPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 344 AFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYASNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQLI 467 >gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 494 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 242/465 (52%), Gaps = 27/465 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++++DSR ++AG +F+A+ G DGH ++ +AI GA A++VS + Sbjct: 23 EILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAVAVLVSK-------PVEVSG 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V++TR + + +P N + + G +G + + I ++G Sbjct: 76 DICVITVEDTRTAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 134 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ D TTP + L L + +GVTH +E SSH L R+ G++ Sbjct: 135 VIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP----AIIYADDAYSKEVMKR 259 FTNL +DH+D+H+T + Y AK +LFE++ P ++ AII DDAY V+++ Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDAYGHRVVEK 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A S+ G ++ V + T+S +G D+ G F VYN L A Sbjct: 255 T-KAPIITYSIDGNGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G C+ GI + + L+ VPGRFE + + + VDYAHT + LE IL+ + I Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 RIIVVFGCGGDRD KRPIMG+IA D+ VT DNPR+EDP +I ++ G+ Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEAGVKEG 431 Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 432 LREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476 >gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Pasteurella dagmatis ATCC 43325] Length = 493 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 236/459 (51%), Gaps = 18/459 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+ E+ DSR + G +FVA+ G++ DG +I QAI +GA A++ + + Q Sbjct: 18 KLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWHQ 77 Query: 89 NTPILVVDNTRKFLSLFASR--LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++ + LS A LY ++ VTGT+GK++++ + Q + G +S Sbjct: 78 DVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSAV 137 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + ++ TT S + + +L+ QG V++E SSHGL QHR++ + Sbjct: 138 MGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDFD 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 FTNL RDH+DYH T + Y AK RLF EL PK II ADD E + +A Sbjct: 198 VAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQ--IINADDPVGVEWLAELGSAVA 255 Query: 264 -GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 CR Q K++ K+ + + + + L GEF V N L+ Sbjct: 256 VSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFATL 315 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++ D +L L V GR E + T S VDYAHT ++LE L+ R G Sbjct: 316 LSLDYDFDELLRTASSLTGVCGRMEML-TQSNQPTAIVDYAHTPDALEKALQAARLHCQG 374 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++ VFGCGGDRD GKRP+M IA LAD IVTDDNPR+E EKI +I + GF ++ Sbjct: 375 QLWCVFGCGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDI---LLGFEDQ 431 Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R +AI AIE + +D +++AGKGHE I+ Sbjct: 432 SAVKILHDREQAIAFAIEQADPEDTILIAGKGHEDYQII 470 >gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. 2_2_4] Length = 482 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGATAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK+++A+ + + ++ Sbjct: 76 GITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGKTTIATLLYNTFR---YFRYK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKSAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R L ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSL-CDFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGVTAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ + +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris C735] Length = 483 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 257/478 (53%), Gaps = 31/478 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+ G +FVA+ G + DGH FI +AI GA +++ +D ++ Sbjct: 22 EITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIELGAISVLC------EDLPKVLQE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V++T + A+ YG H ++ VTGT+GK+++A+ + + ++ G + Sbjct: 76 GITYVQVESTEDAVGKVATLFYGDPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---HK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L+ + G + +E SSH + Q R+ G+ Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K G FTNL RDH+DYH+T + Y NAK F+ LPK++ AI ADD + +M + Sbjct: 193 KFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDS-LPKDAFAITNADDK-NGMIMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F ++ H + + + ++G++ F G+F V N L G Sbjct: 251 ATVKTYSIRTLADF--RARILECHF-EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I +G VL L LH V GR E + + G VDYAHT ++L +L I + G Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364 Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 + +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P+ I +++ G+ Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDIINDMLAGLNEQQ 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R EAIRTA M K DV++VAGKGHET + G K D +++ EI Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHETYQEI-KGVKHHFDDKEVLHEIF 481 >gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM 2008] Length = 494 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 27/465 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V++DSR ++AG +F+A+ G DGH ++ +A+ GA A++VS + S Sbjct: 23 EILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESGAVAVLVSK-------PVEVSS 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V++TR + + +P N + + G +G + + I ++G Sbjct: 76 DVCVITVEDTRAAMMSCVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 134 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ D TTP + L L + +GVTH +E SSH L R+ G++ Sbjct: 135 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259 FTNL +DH+D+H+T + Y AK +LFE++ + A+I DDAY V+++ Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGKGAVINIDDAYGHRVVEK 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A S+ G ++ V + T+S +G D+ G F VYN L A Sbjct: 255 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G C+ GI + + L+ VPGRFE + + + VDYAHT + LE IL+ + I Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 RIIVVFGCGGDRD KRPIMG+IA D+ VT DNPR+EDP +I ++ G+ Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPIQIVKDVEVGVKDG 431 Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 432 LREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476 >gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51] gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 496 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 236/453 (52%), Gaps = 30/453 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G ++ + G DGH F QAIAQGA A++V L + P L V Sbjct: 37 DSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAALLVERILPL---------DIPQLQV 87 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 R+ + A+ LY HP ++ VTGT+GK+++ V+ I G IG + Sbjct: 88 KKVREVMGNLAANLY-DHPAAKLEVVGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGA 146 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I+ TTP I L K L + +GV +E SSH L R+ G + AG F+N Sbjct: 147 RIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSN 206 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLS 269 L +DH+DYH+T + Y AK +LF L + P ++ DD ++ +++ + V++ Sbjct: 207 LTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETLIRLS---AAPVVT 263 Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + + + T+ +G + + PG F VYNAL A + G Sbjct: 264 YGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVEYSTPGMFSVYNALAAFAWGVESGR 323 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRI 384 V E L + VPGRFE V R G+ I VDYAHT + LE + + + T GR+ Sbjct: 324 SPGQVREALAAVQGVPGRFESV----RMGQPFQIIVDYAHTPDGLENVCRTAQEFTQGRL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442 I VFGCGGDRD+GKRP MG IA +L+D IVT DNPR+EDP +I +I+ GI G + Sbjct: 380 ITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGIEGIDYTAN 439 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NR EAI A + + D +++AGKGHE I+ Sbjct: 440 VNRREAIECACLLAKEGDTVLIAGKGHEDYQII 472 >gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM 17361] Length = 484 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/479 (34%), Positives = 253/479 (52%), Gaps = 32/479 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G FVA+ G + DGH FIP+AI GA+AI+ +D Sbjct: 23 ITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIELGAKAILC------EDMPEDRTDG 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V +T + + A+ YG +P ++ VTGT+GK+++A+ + + ++ G + Sbjct: 77 VTYVQVASTAEAVGKLATAFYG-YPSKKLKLVGVTGTNGKTTIATLLYNMFRKMG---HR 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ +D L TTP I L + L+ + G +V +E SSH + Q R+ G+ Sbjct: 133 CGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKMVDAGCEYVFMECSSHAIAQRRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL RDH+DYH T + Y NAK F++ LPK + AI ADD K M N Sbjct: 193 TFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDD-LPKSAFAITNADD---KNGMFMVQN 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + + ++ +H + ++V+G D F G+F V N L G Sbjct: 249 TKATIKTYSMERMADFRARIIEMHF-AGMYLNVDGNDVGVQF--IGKFNVSNLLAVYGAA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381 +G +L L LH V GR E + +S G VDYAHT ++L +L IR + + Sbjct: 306 RMLGKQPEDILVTLSTLHSVSGRLEPI-QSSEGVTAIVDYAHTPDALANVLNAIREVDKT 364 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436 G+II V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P+ I +++ G+ Sbjct: 365 GQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIITSDNPRFEEPQDIIDDMLAGLNTQQM 424 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +R EAI+TA + K DV++VAGKGHE + G K D ++IREI G+ Sbjct: 425 KKVVSIADRREAIKTACMLAKKGDVVLVAGKGHENYQEI-KGVKHHFDDREVIREIFGI 482 >gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf-5] Length = 487 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 250/476 (52%), Gaps = 32/476 (6%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 IF R+ I E++ DSR+++AG +F+A+ G K DG I A+ +GA A+ AY + Sbjct: 8 IFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAV----AYEV 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 + + ++ P++ V LS A R YG N++ VTGT+GK+SV V Q Sbjct: 64 EGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQAL 123 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL +G T Q TTP+PI + L+ L + G V++E SSH Sbjct: 124 DLLGQRCGL----VGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADD 250 GLDQ R+ + TNL RDH+DYH T +AY AK +LF +L + +I DD Sbjct: 180 GLDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCR----VINLDD 235 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + +++ H + S+ +++ ++ + + T+ + L G F Sbjct: 236 DFGRQLAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G++ AL +L L KL GR + +G ++ + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLEYALDEILAVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L +R GR++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPRSEDP +I Sbjct: 353 LEKVLLALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQI 412 Query: 429 RAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +I G EK R AI I + DV+V+AGKGHE + NG++ Sbjct: 413 FDDIRAGFSA-AEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEI-NGQR 466 >gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter italicus Ab9] Length = 483 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 264/476 (55%), Gaps = 32/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + ++F+AI G K DG L++ +AI GA A+VV ++++ Sbjct: 22 IGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNGAIAVVVDR--EIKEYPGI---- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T +LV D R ++ AS Y ++ VTGT+GK+SV ++ I +R + ++ Sbjct: 76 TTVLVED-ARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSVTYMLKAILERQ---NNKV 131 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D + TTP + L + S + ++GV +V +E SSH L R++ + Sbjct: 132 GLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVMEVSSHSLALKRVNECE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+D+H + Y K +LF+ + K + ++I DD YS ++ ++ Sbjct: 192 FDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFK--MAKRA-SVINIDDKYSSMMI---ESS 245 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VL+ G + ++ K + + + + +E K + +PG F VYNAL A + Sbjct: 246 KAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLKIPGLFSVYNALAAITVA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +GI V E L ++ V GRFE V T + +++DYAHT + ++ +++ ++ +G Sbjct: 306 DFLGISLRSVREALSQV-TVKGRFEPVET-GKDFYVFIDYAHTPDGIQNMMEALKEYKAG 363 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R I++FG GGDRD+ KRP+MG+IA AD I+T DNPRSE+P +I ++I GI Sbjct: 364 RKILLFGAGGDRDRIKRPLMGEIAGKYADFCILTSDNPRSEEPREIISQIEEGIKKTDCP 423 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493 ++ NR EAIR A+ K DV+++AGKGHET I+ G K + D +I++EIL Sbjct: 424 YVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQII--GNKVIPFDEREIVKEIL 477 >gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Zunongwangia profunda SM-A87] Length = 476 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 249/478 (52%), Gaps = 32/478 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR ++ +FVAI G+ +GH FI +AI QGA I+ + I + Sbjct: 12 IKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIIC------EKLPNDIVNG 65 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V N+++ L+ A+ Y ++P + ++ VTGT+GK+++A+ + + ++G F+ Sbjct: 66 VTYVQVANSKEALAYMAANFY-ENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAG---FK 121 Query: 147 IGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ D TTP + + L+ ++ +GV + +E SSHG+DQHR G+ Sbjct: 122 VGLLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTTGL 181 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL DH+DYH + Y + K R F+E LP + A+ DD + EVM N Sbjct: 182 VFAGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDE-LPASAFALTNVDDK-NGEVM--LQN 237 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + G + + I Q + ++ D + L G F YN L Sbjct: 238 TKAKQYTYGLKN---YADYKAQILENQFTGLLLKINDQEVWSRLIGSFNAYNILAIYAAA 294 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+++ L+ + +LH V GRF++ + VDYAHT ++L+ +L I I + Sbjct: 295 ELLGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTINAIRTK 354 Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439 +I V GCGGDRD+ KRP MG IA L+ I T DNPR+ED + I EI G+ P Sbjct: 355 NEELITVVGCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIEEIEKGVEPQN 414 Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K NR +AI+TA +M D++++AGKGHET V NG+K D I+ E L Sbjct: 415 FNKTVSISNRKQAIKTACQMAQANDIILIAGKGHETYQEV-NGQKHDFDDYKIVSEFL 471 >gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185] Length = 482 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 161/504 (31%), Positives = 263/504 (52%), Gaps = 48/504 (9%) Query: 14 LINQL--SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+N+L +I P+Q + +I ++ DSR ++AG +F+A+ G + DGH +IP AI +GA Sbjct: 2 LLNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126 A++ +D + + V ++ A+ YG ++ VTGT+GK Sbjct: 62 VAVLC------EDMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + + G +++G ST+ ++ D + TTP PI L + L ++ +G Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGC 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + Sbjct: 173 KYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNA 231 Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296 ++ DD ++ + + R LS ++G+ + H + + N ++ + Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-NFKGRVLESHFEGMLLDFNNHELAVQFI 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK F N L G + +G VL L LH V GRF+ V + +G Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAV-RSPKGV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I Sbjct: 339 TAIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV++VAGKGH Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGH 458 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + G K D +I++EI Sbjct: 459 ENYQEI-KGVKHHFDDKEILKEIF 481 >gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum nigrificans DSM 574] Length = 492 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 259/483 (53%), Gaps = 33/483 (6%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L+ K+ I+ ++I Q + ++ ++ DSR +Q G++FVAI G K DGH FI A Sbjct: 6 LLLKELLSAIDVIAISGPQ--DIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNARE 63 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A+VV + ++ ++ V ++R+ L+L A + YG HP + V G +G Sbjct: 64 AGATAVVVEREVEVP-------ADLTVIKVSDSRQALALLADKFYG-HPSRKMTVVGVTG 115 Query: 126 KSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178 + + + I ++ GL +G TI + + L TTP + L K ++ + Sbjct: 116 TNGKTTTTHLIAAIWRQVGLKPGVVG---TIHNLIGEKALPVTNTTPESLDLHKLMAEMV 172 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V V++E SSH L +R+ G+K FTN+ +DH+D+H + Y AK +LFE+ + Sbjct: 173 REDVQGVAMEVSSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDI 232 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG 297 A+I ADD ++++ K + +V + G + + K + T++ Sbjct: 233 KY---AVINADDQAAEQLFKISRG---KVYTYGIENNADVRAKDIQVTARGVSFTVNSPW 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G F VYN+L A + + +G + V LE + V GRFE V + Sbjct: 287 GEQRLELKLTGRFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELV-DQGQDFA 345 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT + LE IL R IT GR+I VFGCGGDRD+ KRPIMG+IA +D+ +VT Sbjct: 346 VVVDYAHTPDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTS 405 Query: 418 DNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR+EDP+KI +I+ G+ G ++ +R EAI AI + DV+V+AGKGHE Sbjct: 406 DNPRTEDPQKIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKGHEDY 465 Query: 473 HIV 475 I+ Sbjct: 466 QII 468 >gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 495 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 242/488 (49%), Gaps = 30/488 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S Sbjct: 19 ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q + + Sbjct: 79 MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q+R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A + VG+ G ++ +V N + + L G F V N Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++G +L L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILS 430 Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G+ R EA+ +AI DV+++AGKGHE +V N S + Sbjct: 431 GL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTV 487 Query: 489 IREILGLI 496 R +LG++ Sbjct: 488 AR-LLGVV 494 >gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cytophaga hutchinsonii ATCC 33406] Length = 486 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 165/509 (32%), Positives = 269/509 (52%), Gaps = 44/509 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+++DLIYK +S+ + R + + + DSR ++ G +F+A+ G DGH F Sbjct: 1 MQIKDLIYK--------VSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I I +GA A+V L + +T ++ I+ V ++ + L + AS Y + Sbjct: 53 IADVIQKGATAVVCEE---LPEIEST--ADCTIIQVKDSAEALGMIASNFYDSPSSKLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK++ + + ++ ++ G ++ G ST+ + +D + TTP I L K Sbjct: 108 VGVTGTNGKTTTVTLLYRLFRKLG---YKTGLLSTVENIIEDKVVQATHTTPDAISLNKL 164 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + G TH +E SSH Q R+ G++ G F+N+ DH+DYH+T Y AK +L Sbjct: 165 LADMVKAGCTHCFMEVSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAK-KL 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ 290 F + LP +S A+I +DD + +++ RA +L++ ++GK I Q Sbjct: 224 FFDGLPNDSFALINSDDKRGRVMIQNTRAKTYTYSLLALADFKGKLIST-------TMQG 276 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + V+G F L G F YN L + +G D VL L + GRFE Sbjct: 277 LEMDVDG--IQAWFRLIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANGRFEQQI 334 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + +R + VDYAHT ++L+ +L+ I + + +II V GCGG+RD KRP+M IA Sbjct: 335 SATR-ITVIVDYAHTPDALKNVLETITELKGANKIITVVGCGGNRDAAKRPVMADIACQF 393 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVV 464 +D ++T DNPR+E+P+ I E+ G+ +K +R EAI+ A + + D+++V Sbjct: 394 SDHVVLTSDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILV 453 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 AGKGHET + G K D II+E+L Sbjct: 454 AGKGHETYQEI-KGVKYPFDDRLIIKELL 481 >gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Capnocytophaga gingivalis ATCC 33624] Length = 494 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 244/458 (53%), Gaps = 32/458 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ ++ SR I +F AI G DGH FIP+ IAQ + +VV +D + Sbjct: 21 QEVGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQQGKVLVV------EDLPEALA 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V +T + + A+ YG HP ++ VTGT+GK+++AS Q+ ++ G Sbjct: 75 EGVTYVQVTDTSRAMGQIAAHFYG-HPSEQLRLVGVTGTNGKTTIASLSYQLFRQLG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++G STI+ + R TTP + L K L + QGVTH +E SSHG+ HR++ Sbjct: 131 YKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFMEVSSHGIALHRIE 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G FTNL +DH+D+H+T Y + K + F+ LPK + A+ +D +++ Sbjct: 191 GLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDH-LPKTAFALTNIEDKNGAYMLQNT 249 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +A ++G F K +T+ V + + L G F YN L Sbjct: 250 -SAHKSTYALGRAADF---KGQLLESTFAGMTLRV--GNHEVWTSLIGRFNAYNLLAIYA 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G + VL + L V GRF++ + S G + VDYAHT ++L+ +++ I I Sbjct: 304 TAVLLGEEPLEVLTQISTLRSVAGRFQYFVSPS-GVTVIVDYAHTPDALQNVIETILDIK 362 Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-P 437 S R+I V GCGG+RD+GKRPIM IA L++ I+T DNPR EDPE+I E+ GI P Sbjct: 363 DPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVILTSDNPREEDPEEILREMEAGITP 422 Query: 438 GFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 K +R +AI+ A + K D++++AGKGHET Sbjct: 423 ENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKGHET 460 >gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SMS-3-5] Length = 495 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HRCGQAIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + ++ G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Aeromonas veronii B565] Length = 493 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 255/482 (52%), Gaps = 30/482 (6%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L F +Q + ++ DSR + G +FVAI G++ DG FI QA+AQGA A+V Sbjct: 9 LRPFGIQAPALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVV----- 63 Query: 78 SLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 ++ I +TP+ + + LS A Y + + +++ +TGT+GKS+ A V Sbjct: 64 -FEEDGEFIPPSTPVPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLV 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 L + G TI + N + TT S + + L+ L +QG V++E Sbjct: 123 ---ANWRTLLGGKAGVMGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL QHR+ + A FTNL RDH+DYH T +AY AK +L + L ES A+I D Sbjct: 180 SSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEQLLQ--LVDESNAVINRD 237 Query: 250 DAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 D + +++ A SV + G+ + +++ + I+ + Sbjct: 238 DELGAKWLEKYPAA--VAFSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSA 295 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G F V N L A G+ + +G D +L KL V GR E G + VDYAH Sbjct: 296 PLLGRFNVSNVLAAMGVMLVLGYDFNELLATAPKLQPVTGRMECFGGGDTPLAV-VDYAH 354 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L+ +R +G++ + GCGGDRD+GKRP+M +A AD I+TDDNPR+E+ Sbjct: 355 TPDALEKALQALRVHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEE 414 Query: 425 PEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P +I A+++ G+ P ++ + +R++AI AI +KQD+++VAGKGHE I+ ++ Sbjct: 415 PARIMADMVAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKGHEDYQIIGTDKRH 474 Query: 482 MS 483 S Sbjct: 475 YS 476 >gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 491 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KANNIRITSHGSTFDLR 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 485 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 257/483 (53%), Gaps = 35/483 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I ++ DSR +Q G +FVA+ G + DGH +I +A+ +GA A+V + +Q T Sbjct: 23 RNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEKGAVAVVCEAWPEVQAEGVTY- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + A+ YG + + VTGT+GK+++A+ + + + G + Sbjct: 82 -----VQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTTIATLLYNMFRVFG---Y 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ D + TTP PI L + L ++ +G + +E SSH + QHR+ G Sbjct: 134 KCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQHRIAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K G FTNL RDH+DYH+T + Y +AK F+ LPK + A+ DD + +M + Sbjct: 194 LKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDG-LPKGAFAVTNVDD-RNGMIMVQNT 251 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319 A + S+ F K + + + + V GK+ P G F V N A+ AA Sbjct: 252 KAVVKTYSLRAAADF---KAKVLEESFEGMCLDVNGKEVS--VPFIGRFNVSNLLAVYAA 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +C+ G + LV L L V GRFE + + G VDYAHT ++L +L + I Sbjct: 307 AVCMGRGAEDVLVA--LSTLRPVNGRFETI-RSKEGVTAIVDYAHTPDALVNVLSTVNEI 363 Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 G +I V G GG+RD+GKRPIM + A+ +D I+T DNPR E+P++I +++ G+ Sbjct: 364 LKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDMLAGLD 423 Query: 438 -----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +R EAIRTA M DV++VAGKGHE V G K D ++I+E+ Sbjct: 424 KEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEV-KGVKHHFDDHEVIKEV 482 Query: 493 LGL 495 G+ Sbjct: 483 FGI 485 >gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella parvula ATCC 17745] Length = 494 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 27/465 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V++DSR ++ G +F+A+ G DGH ++ +A+ GA A++VS I S Sbjct: 23 EILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSKPIE-------ISS 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V++TR + + +P N + + G +G + + I ++G Sbjct: 76 DVCVITVEDTRAAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILRAQGHKVG 134 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ D TTP + L L + +GVTH +E SSH L R+ G++ Sbjct: 135 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 194 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259 FTNL +DH+D+H+T + Y AK +LFE++ + A+I DDAY + V+++ Sbjct: 195 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAVINIDDAYGQRVVEK 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A S+ G ++ V + T+S +G D+ G F VYN L A Sbjct: 255 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 312 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G C+ GI + + L+ VPGRFE + + + VDYAHT + LE IL+ + I Sbjct: 313 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 371 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 RIIVVFGCGGDRD KRPIMG+IA D+ VT DNPR+EDP +I ++ G+ Sbjct: 372 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGVKDG 431 Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 432 LREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDYQILKD 476 >gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio orientalis CIP 102891] Length = 494 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 236/452 (52%), Gaps = 19/452 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR--SNTPIL 93 DSR + G FVA+ G+ DG FI AI GA A++ S Q + TI P++ Sbjct: 33 DSRKVTNGTTFVAVKGHAVDGRRFIASAIELGANAVIAESCE--QHLAGTIEYIDTIPVI 90 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + LS ASRLY H I+ VTGT+GK+++ + Q + G + +G T Sbjct: 91 YIAQLGTHLSALASRLYPLHEHQIIGVTGTNGKTTITQLIAQWLELIGKKAAVMGTTG-- 148 Query: 154 SSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + F D + TT + I + + L L Q ++E SSHGL Q R+ + G F+ Sbjct: 149 NGFLDDLQPAANTTGNAIEIQQTLHQLEQQSAQFTALEVSSHGLVQGRVKALDFAVGVFS 208 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+DYH T + Y AK LF E A+I DD ++R NA L Sbjct: 209 NLSRDHLDYHGTMEEYAEAKFSLFSE--HNCHNAVINIDDQVGSRWVERLDNAIAVSLKP 266 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + K V +++ +++S++G D + PL GEF N L+A +A+GID Sbjct: 267 TAIERAVWAKSVA--YSESGISLSIDGMFGAGDCVVPLIGEFNASNVLLAMTTLLALGID 324 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 L+LE L V GR E T ++ VDYAHT ++LE L +R G++ +F Sbjct: 325 KQLLLETASSLKPVLGRMELF-TAENKAKVVVDYAHTPDALEKALNALRVHCQGQLWAIF 383 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445 GCGGDRD GKRP+M I LAD I+TDDNPRSE P +I +++ G+ + + +R Sbjct: 384 GCGGDRDTGKRPMMAAIGERLADRVILTDDNPRSESPAEIVKDMLVGMNQPDTAVVEHSR 443 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +A++ A+ + D++++AGKGHE ++ + Sbjct: 444 FDALQFALANSHADDIILLAGKGHEDYQVMAH 475 >gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Veillonella sp. 6_1_27] Length = 496 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 240/465 (51%), Gaps = 27/465 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V++DSR ++ G +F+A+ G DGH ++ +A+ GA A++VS I S Sbjct: 25 EILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAVAVLVSK-------PVEISS 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V++TR + + +P N + + G +G + + I ++G Sbjct: 78 DVCVITVEDTRAAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKAQGHKVG 136 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ D TTP + L L + +GVTH +E SSH L R+ G++ Sbjct: 137 VIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEY 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259 FTNL +DH+D+H+T + Y AK +LFE++ + A+I DDAY V+++ Sbjct: 197 DTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAVINIDDAYGHRVVEK 256 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A S+ G ++ V + T+S +G D+ G F VYN L A Sbjct: 257 T-TAPIITYSIDGSGT-LNAHDVDMTPKSSRYTVSYDGHDYTVAMNTTGLFNVYNTLAAI 314 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G C+ GI + + L+ VPGRFE + + + VDYAHT + LE IL+ + I Sbjct: 315 GACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAI 373 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 RIIVVFGCGGDRD KRPIMG+IA D+ VT DNPR+EDP +I ++ G+ Sbjct: 374 QENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDNPRTEDPVQIVKDVEVGVKDG 433 Query: 440 IEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 434 LREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDYQILKD 478 >gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium hafniense DCB-2] Length = 495 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 164/453 (36%), Positives = 236/453 (52%), Gaps = 30/453 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G ++ + G DGH F QAIAQGA A++V L + P L V Sbjct: 36 DSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAAALLVERILPL---------DIPQLQV 86 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 R+ + A+ LY HP ++ VTGT+GK+++ V+ I G IG + Sbjct: 87 KKVREVMGNLAANLY-DHPAAKLEVVGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGA 145 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I+ TTP I L K L + +GV +E SSH L R+ G + AG F+N Sbjct: 146 RIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSN 205 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLS 269 L +DH+DYH+T + Y AK +LF L + P ++ DD ++ +++ + V++ Sbjct: 206 LTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNGDDPAAETLIRLS---AAPVVT 262 Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + + + T+ +G+ + PG F VYNAL A + G Sbjct: 263 YGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGMFSVYNALAAFAWGVESGR 322 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRI 384 V E L + VPGRFE V R G+ I VDYAHT + LE + + + T GR+ Sbjct: 323 SPGQVREALAAVQGVPGRFESV----RMGQPFQIIVDYAHTPDGLENVCRTAQEFTQGRL 378 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442 I VFGCGGDRD+GKRP MG IA +L+D IVT DNPR+EDP +I +I+ GI G + Sbjct: 379 ITVFGCGGDRDKGKRPQMGAIAEELSDHVIVTSDNPRTEDPRQIIRDILEGIEGIDYTAN 438 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NR EAI A + + D +++AGKGHE I+ Sbjct: 439 VNRREAIECACLLAKEGDTVLIAGKGHEDYQII 471 >gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii] Length = 507 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/494 (32%), Positives = 247/494 (50%), Gaps = 23/494 (4%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + I+ + DSR + +G +FV +G DGH F+PQA QGA Sbjct: 5 ELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 IV + + + S +++V +T LS A YG+ E+ ++ +TGT+GK+ Sbjct: 65 VIVATKEVEIGE------SVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 + + ++ I + GL + IG S QD TTP +YL K ++ + Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244 +E SSH L Q R I FTNL RDH+DYH+ + +Y AK +LF ++ P Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD + + N V++ G + +H + + V + + + Sbjct: 239 VVNIDDPNAGYFVSLG-NPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEIS 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G VYN L A + IA+ ++ +E++ VPGR E V + + VDYA Sbjct: 298 SGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQPFAVIVDYA 356 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L +L +R RII V GCGGDRD+GKRP+M KIA +++ I T DNPRSE Sbjct: 357 HTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSE 416 Query: 424 DPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP K I +G F+ +I A+R A+ M + D +V+AGKGHE I+ E Sbjct: 417 DPRKFERSYYPPIWNGNRVFVYDLRKI-AVRAAVAMGEEGDAVVIAGKGHEKYQIIGK-E 474 Query: 480 KKMSVDCDIIREIL 493 +K D + RE L Sbjct: 475 RKYHDDREECREAL 488 >gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-175] Length = 513 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 494 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/474 (35%), Positives = 245/474 (51%), Gaps = 38/474 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G +FVAI G++ DG FI QA+AQGA A++ +F A Sbjct: 22 LTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEED---GEFVAPAL-G 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L + + LS A Y + +++ +TGT+GKS+ A V C L + Sbjct: 78 VPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCT---LLGGKA 134 Query: 148 GPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + F + + TT S + + L+ L +QG V++E SSHGL QHR+ + Sbjct: 135 GVMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKE 255 A FTNL RDH+DYH T +AY AK L + L E A++ ADD AY Sbjct: 195 FAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVAEPCAVLNADDRLGRQWLAAYPAA 252 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQV 312 V H G+ G+ + + H QQ I+ + PL G F V Sbjct: 253 VAFSVHGP-----VAGHPGRQLTAQDP---HFHQQGFRTQINSSWGNGVLSAPLLGRFNV 304 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G + +G D +L +L V GR E G + VDYAHT ++LE Sbjct: 305 SNVLAAMGAMLVLGYDFDELLASAPQLQPVTGRMECFG-GGKAPLAVVDYAHTPDALEKA 363 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R GR+ + GCGGDRD+GKRP+M +A AD I+TDDNPR+E+P +I A++ Sbjct: 364 LQALRVHCEGRLWCLVGCGGDRDRGKRPMMAAMAELHADRVILTDDNPRTEEPARIMADM 423 Query: 433 IHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + G+ PG ++ + +R +AI A+ +KQD+++VAGKGHE I+ ++ S Sbjct: 424 VAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKGHEDYQIIGTDKRHYS 477 >gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492] Length = 462 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 253/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I G +F+A+ G + DGH +IP AI +GA A++ ++ +++ Sbjct: 2 EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 55 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK++VA+ + + G ++ Sbjct: 56 GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 112 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L ++ G + +E SSH + Q R+ G+ Sbjct: 113 VGLVSTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 172 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F+E LPK + ++ DD ++ Sbjct: 173 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 231 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++GK + H + + N ++ + GK F YN L Sbjct: 232 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 279 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L I Sbjct: 280 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 338 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K + L+D I+T DNPR E+P+ I +++ Sbjct: 339 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 398 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ I +R EAI+TA + DV++VAGKGHE + G K D +I+ Sbjct: 399 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 457 Query: 490 REIL 493 EI+ Sbjct: 458 NEIM 461 >gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes Clip81459] gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J2-064] gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 4b H7858] gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes HPB2262] gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-194] gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes 1816] Length = 491 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284 Query: 304 FPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P+ G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria monocytogenes str. Scott A] Length = 494 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 8 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 68 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 238 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 239 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 287 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 288 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 348 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 407 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 466 Query: 472 VHIV 475 ++ Sbjct: 467 YQVI 470 >gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 481 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 255/478 (53%), Gaps = 31/478 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ V DSR + G +FVAI G + DGH FI +A+AQGA A++ + A + Sbjct: 20 EVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQGAVAVLCET------MPAEL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + V++T + A+ YG+ + + + VTGT+GK+++A+ + + ++ G Sbjct: 74 PQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + G ST+ ++ +D + TTP PI L L + G +V +E SSH + Q R+ Sbjct: 131 HRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G F+NL RDH+DYH+T + Y NAK F ++LPK++ AI ADD + VM + Sbjct: 191 GLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFF-DMLPKQAFAITNADDK-NGMVMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + S F K+ H + + + + G + F G+F V N L G Sbjct: 249 TRATVKTYSTRSMADF--KAKILECHF-EGMYLEINGAEVGVQF--IGKFNVSNLLAVYG 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G +L + LH V GR E + + G + VDYAHT ++LE +L I + Sbjct: 304 TAVMLGKRPEDILLVMSTLHSVNGRLEPL-RSPEGYTVIVDYAHTPDALENVLNAIHEVL 362 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + G++I V G GG+RD+GKRP+M A+ +D I+T DNPR EDP+ I +++ G+ Sbjct: 363 NGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDMLAGLNA 422 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +R EAIRTA M K DV++VAGKGHE + G K D ++++E Sbjct: 423 QQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKGHEDYQEI-EGVKHHFDDKEVVKE 479 >gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC 2396] Length = 508 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 161/491 (32%), Positives = 248/491 (50%), Gaps = 45/491 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++++ DSR + +G +FVA G +G ++ A+A+GA A+++ + + Sbjct: 27 LSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALARGARAVLLPGTRQ----HVYEKGD 82 Query: 90 TPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + + N R + + A R +G+ H ++ VTGT+GKSSV +V Q+ + G+S+ + Sbjct: 83 VVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGTNGKSSVTHYVAQMAEGLGMSAAVV 142 Query: 148 GPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + + + L TTP + L + L+ L +G+ V++E SSH LDQ R G+ Sbjct: 143 GTLG----YGRPDSLKATTHTTPDAVSLHRVLAELRDEGIELVAMEVSSHALDQDRAAGV 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+ RDH+DYH T +AY AK RLF L + DD Y + Sbjct: 199 NFDVAVLTNITRDHLDYHGTLEAYAEAKKRLF--LSDSVRWKVFNQDDPYGARWAQELQG 256 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313 S+G Q + VCA + + +G F L GEF + Sbjct: 257 PKTLTFSIGKQDQTA--ADVCA----EDIHFDADGMSFALDLGATREPARLALVGEFNLS 310 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A A+ ++ V + L +L V GR + + + + + VDYAHT ++LE+ L Sbjct: 311 NALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRLHED-KAPTVLVDYAHTPDALEVAL 369 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K R GR+ VFGCGGDRD GKRP+MG +A AD ++TDDNPR EDPE I A+I+ Sbjct: 370 KAARRHCPGRLWCVFGCGGDRDPGKRPLMGAVAAQYADEVVLTDDNPRGEDPESIVAQIV 429 Query: 434 HGIPGFIEKGN-------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G E+G R +AIR A+E ++DV+++AGKGHE + G + D Sbjct: 430 KG----AEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKGHEDYQEI-QGRRLPFSDI 484 Query: 487 DIIREILGLIL 497 I R+ L ++ Sbjct: 485 AIARDCLASVV 495 >gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum KIST612] Length = 498 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 169/485 (34%), Positives = 258/485 (53%), Gaps = 36/485 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL + I +D PE++ + P E I ++ +S+ + +FVAI G K DGH +I Sbjct: 6 MKL-NCILED-PEIVEVRNNNP----EIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA- 119 AI++GA I+V + L ++ I + V N R L +SR YG HP L+ Sbjct: 60 GDAISRGA--ILVIYEHDLDEYQDDIM----YVKVKNARHMLGTMSSRFYG-HPSEALSI 112 Query: 120 --VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNR-LTTPSPIYLAKALS 175 VTGT+GK+++ ++ I Q+ G IG + I DN TTP + + + +S Sbjct: 113 TGVTGTNGKTTITHMLKSIFQKDGRKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIIS 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G ++ +E SSH LD R++G+ G F+NL +DH+DYH+T + YF AK +LF Sbjct: 173 EMVEAGCQNLVMEVSSHALDLDRVNGVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLF- 231 Query: 236 ELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVT 292 II DD + K++ R A G V S G + F +I + Sbjct: 232 --TYTSKANIINCDDVWGKKLYDRCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTL 289 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ +G++ + +PGE VYN++ A + GI ++ E L + V GR E + + Sbjct: 290 VTKDGEE-EIFISIPGEVMVYNSMAAIINALLEGISIEVIKEALASMSGVEGRMERLDLD 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + I +DYAH+ +SLE +LK+++T+ G++ +VFGC GDRD+ KRPIMG+IA + AD Sbjct: 349 TEFD-IIIDYAHSPDSLERLLKSVKTMYDGKVYLVFGCNGDRDKEKRPIMGRIAGEFADH 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-------RIEAIRTAIEMLNKQDVLVVA 465 IVT DNP SEDP+ I + + EK + R +AI A + DVLV+A Sbjct: 408 VIVTSDNPASEDPQSIIDTVAAAVA---EKTDACETVLRRWDAIYYAATLPKAGDVLVLA 464 Query: 466 GKGHE 470 GKGHE Sbjct: 465 GKGHE 469 >gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium phaeobacteroides BS1] Length = 500 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 239/463 (51%), Gaps = 26/463 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++SDSR +FVA+ G DGH FI A++ G++A+V ++ T Sbjct: 23 EMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDAVSLGSKAVVC------EELPETP 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++V + R+ ++ A YG + +I+ VTGT+GK++ A + + G+ + Sbjct: 77 AERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNGKTTTARLMAGMMNDCGIRT 136 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T + A D ++ TTP L + S ++ +G V +E SSH L R Sbjct: 137 GYIG---TGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRAVVMEVSSHALVLQRTF 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVM 257 GI +TNL +DH+D+H T ++Y +AK LF + P E ++ ADD + E Sbjct: 194 GIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSP-EGFVVVNADDPRAGFMAENR 252 Query: 258 KRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ C V Y +GK + A +V I +G+ +D LF L G F V N Sbjct: 253 GKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDADGRGYDVLFRLTGLFNVMN 312 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L +A+G++ VL L V GR E V + VDYAHT ++LE ++ Sbjct: 313 LLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDFFAVVDYAHTPDALEKVIG 372 Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + G +IVVFGCGG+RD KR +MG+IA AD I+T DNPR E+PE I +I Sbjct: 373 TLNELKPEEGELIVVFGCGGNRDHEKRSVMGRIASRGADRLIITSDNPRDENPESILDDI 432 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 GI PG++ +R EAI + +L + D+L+VAGKGHET Sbjct: 433 AEGIVSPGYMRFCDRAEAIHCGVNLLKEGDILLVAGKGHETCQ 475 >gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-3] gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-29] Length = 491 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 254/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +F+ + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L ++ A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + D Sbjct: 237 VLNSDDPVAEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I ++I G G + +R EAIR AI +D++++AGKGHET I+ Sbjct: 410 RSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466 >gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748] Length = 494 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 241/463 (52%), Gaps = 29/463 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++++DSR ++AG +F+A+ G DGH ++ +A+ GA A++VS + + Sbjct: 26 DITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAGAVAVLVSKPVE-------VSGDVC 78 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++ V++TRK + + +P N + + G +G + + I ++G Sbjct: 79 VITVEDTRKAMMACVPYFF-DYPANSMRMIGVTGTNGKTTTTHMIRHILKGQGHKVGVIG 137 Query: 152 TISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T+ D TTP + L L + +GVTH +E SSH L R+ G++ Sbjct: 138 TVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVSSHALALGRVSGVEYDTA 197 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP----AIIYADDAYSKEVMKRAHN 262 FTNL +DH+D+H+T + Y AK +LFE++ P ++ AII DD Y V+++ Sbjct: 198 VFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGKGAIINIDDEYGHRVIEKT-- 255 Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +++ GK ++ V + T+S +G D+ G F VYN L A G Sbjct: 256 -TAPIITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGNDYTVAMNTTGLFNVYNTLAAIGA 314 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 C+ GI + + ++ VPGRFE + + + VDYAHT + LE IL+ + I Sbjct: 315 CLLEGISMEDIDKAMKTFSAVPGRFELI-EEGQPFAVVVDYAHTPDGLENILQTAKAIQE 373 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 RIIVVFGCGGDRD KRPIMG+IA DI VT DNPR+EDP +I ++ G+ + Sbjct: 374 NRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSDNPRTEDPVQIVKDVEVGVKEGLR 433 Query: 442 KG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +G +R EAI+ AI+ D++++AGKGHE I+ + Sbjct: 434 EGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDYQILKD 476 >gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans DSM 13031] Length = 521 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 242/468 (51%), Gaps = 44/468 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+SDSR + G +FVA+ G DGH FI A+ +GA +++ ++ + I Sbjct: 36 EVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVIC------EEIPSGIED 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V + R L+ A YG + I+ VTGT+GK++ + + + G+S Sbjct: 90 GVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNARGISCGY 149 Query: 147 IGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + + +FA+ TTP L + G V +E SSH L R+ GI+ Sbjct: 150 IG--TNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSHALMLKRVHGIR 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--H 261 A FTNL +H+D+H+T +AY +AK LF++L P + A++ DD + + R Sbjct: 208 FRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTP-DGFAVLNRDDPAAPFMAARVLPE 266 Query: 262 NAGCRVLSVGYQ--------------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 C LS G I +V A+H + V +S+E + LP Sbjct: 267 KIYCCSLSARQDTSLACGNSFFAEITGASIASSRV-ALHFPETV-VSIEVR-------LP 317 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L AA + +G+D + L + V GR E VG + GG +VDYAHT + Sbjct: 318 GSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVDYAHTPD 377 Query: 368 SLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L +R + R+IVVFGCGG+RD+ KRP MG+IA +LAD I+T DNPR EDP Sbjct: 378 ALFKVLSTLRDLKDEHSRLIVVFGCGGNRDRSKRPEMGRIASELADEVIITSDNPRDEDP 437 Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E I EI G+ + +R EAI A+ M+ K DVL+VAGKGHE Sbjct: 438 EAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKGHE 485 >gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Vibrio fischeri ES114] Length = 493 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 160/495 (32%), Positives = 255/495 (51%), Gaps = 22/495 (4%) Query: 17 QLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 QLS + W + I+ ++ DSR + G +FVAI G+ DG FI AI QGA A++ Sbjct: 3 QLSELLLPWCDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQGAVAVI 62 Query: 73 VSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 + ++ + T++ N ++ +D+ LS A Y N ++ +TGT+GK++ Sbjct: 63 ADA--DKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTNGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + Q + +G T + S + TT SPI + + L+ L + G ++ Sbjct: 121 ISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAKLTAL 180 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGL Q R++ + A FTNL RDH+DYH Y AK LF PK S II Sbjct: 181 EVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNS--IIN 238 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 DD + +K +A L+ + GK + V +++IS + + F Sbjct: 239 GDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSISSDWGNVAFS 298 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PL G F N LVA +++G D + + +L+ V GR E T+++ ++ VDYA Sbjct: 299 VPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDNKA-KVVVDYA 357 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L+ L+ +R G++ +FGCGGDRD GKRPIM I AD I++DDNPRSE Sbjct: 358 HTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPIMASIVEQQADAIILSDDNPRSE 417 Query: 424 DPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +P I +++ G+ +R EA + A+ N+ D++++AGKGHE ++ + Sbjct: 418 EPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKGHEDYQVLADKTV 477 Query: 481 KMSVDCDIIREILGL 495 S D + + +LGL Sbjct: 478 HYS-DRETAQTLLGL 491 >gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens KN400] Length = 509 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 247/495 (49%), Gaps = 59/495 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+IN + DSR +++G +F A+ G DGH FI A +GA A+V+ IR Sbjct: 21 REINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCGMEWIR 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145 V + R +S A+ YG+ + + V T + V+ I R+G+ + Sbjct: 81 -------VGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTTTYLVEAIMSRAGIPAA 133 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G S S TTP + L + L +G V +E SSH L+Q R+D + Sbjct: 134 VLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRRVDSCRF 193 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESPAIIYADDAYSKEVMK 258 FTNL RDH+DYH+ ++YF +K RLF EL+ P+ + AI DD+Y +++ Sbjct: 194 DVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAI-NRDDSYGARLVE 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGE 309 A V+S G A + V SV+G + P L G Sbjct: 253 ---TAVAPVISYGLAAD--------AAVRAENVVFSVDGIAGTLVTPFGTALFHSHLLGR 301 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F +YN L A + +G+ ++L +E VPGR E V N RG + VDYAHT ++L Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV-HNERGVTVLVDYAHTGDAL 360 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +LK + + +GRII VFGCGGDRD+GKRP+M +I+ + + IVT DNPR+E+P I Sbjct: 361 ENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAII 420 Query: 430 AEIIHGI--------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E++ GI GF+EKG +R +AIR A + D++++AGKGHE Sbjct: 421 KEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVAGDIVLLAGKGHE 480 Query: 471 TVHIVTNGEKKMSVD 485 I+ G +K D Sbjct: 481 DYQII--GTEKFHFD 493 >gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 482 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 252/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I G +F+A+ G + DGH +IP AI +GA A++ ++ +++ Sbjct: 22 EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK++VA+ + + G ++ Sbjct: 76 GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D TTP PI L + L ++ G + +E SSH + Q R+ G+ Sbjct: 133 VGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F+E LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++GK + H + + N ++ + GK F YN L Sbjct: 252 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L I Sbjct: 300 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K + L+D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ I +R EAI+TA + DV++VAGKGHE + G K D +I+ Sbjct: 419 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 477 Query: 490 REIL 493 EI+ Sbjct: 478 NEIM 481 >gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacter sulfurreducens PCA] Length = 509 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/495 (33%), Positives = 247/495 (49%), Gaps = 59/495 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+IN + DSR +++G +F A+ G DGH FI A +GA A+V+ IR Sbjct: 21 REINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAVAVVLEDETRAPCGMEWIR 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145 V + R +S A+ YG+ + + V T + V+ I R+G+ + Sbjct: 81 -------VGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTTTYLVEAIMSRAGIPAA 133 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G S S TTP + L + L +G V +E SSH L+Q R+D + Sbjct: 134 VLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVMEVSSHALEQRRVDSCRF 193 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKESPAIIYADDAYSKEVMK 258 FTNL RDH+DYH+ ++YF +K RLF EL+ P+ + AI DD+Y +++ Sbjct: 194 DVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRAAAI-NRDDSYGARLVE 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGE 309 A V+S G A + V SV+G + P L G Sbjct: 253 ---TAVAPVISYGLAAD--------AAVRAENVVFSVDGIAGTLVTPFGTAPFHSHLLGR 301 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F +YN L A + +G+ ++L +E VPGR E V N RG + VDYAHT ++L Sbjct: 302 FNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERV-HNERGVTVLVDYAHTGDAL 360 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +LK + + +GRII VFGCGGDRD+GKRP+M +I+ + + IVT DNPR+E+P I Sbjct: 361 ENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLTIVTSDNPRTEEPAAII 420 Query: 430 AEIIHGI--------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E++ GI GF+EKG +R +AIR A + D++++AGKGHE Sbjct: 421 KEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVAVAGDIVLLAGKGHE 480 Query: 471 TVHIVTNGEKKMSVD 485 I+ G +K D Sbjct: 481 DYQII--GTEKFHFD 493 >gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH621] gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST196] gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides DSM 2048] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 255/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ E +I + +DSR ++ G +F+ + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I+ +DD ++E M+ + V++ G I + + T+ + + Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I ++++ + G + +R EAIR+AI + +D++++AGKGHET I+ Sbjct: 410 RSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466 >gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36] Length = 482 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 252/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I G +F+A+ G + DGH +IP AI +GA A++ ++ +++ Sbjct: 22 EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLC------EELPEELKA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG ++ VTGT+GK++VA+ + + G ++ Sbjct: 76 GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D TTP PI L + L ++ G + +E SSH + Q R+ G+ Sbjct: 133 VGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F+E LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++GK + H + + N ++ + GK F YN L Sbjct: 252 KVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK-----------FNAYNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ + + +G VDYAHT ++L +L I Sbjct: 300 AVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAI-RSPKGYTAIVDYAHTPDALVNVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K + L+D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ I +R EAI+TA + DV++VAGKGHE + G K D +I+ Sbjct: 419 GLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHENYQEI-KGVKHHFDDKEIL 477 Query: 490 REIL 493 EI+ Sbjct: 478 NEIM 481 >gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Listeria monocytogenes FSL R2-503] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSTFDLR 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ D++++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus ureae ATCC 25976] Length = 501 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 239/467 (51%), Gaps = 25/467 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ---DFSATI 86 + +++ DSR + G +FVA+ G++ DG FI +AI QGA +V++ A Q + A Sbjct: 21 LKQITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGA-GLVLAEADEGQTEIELDAKF 79 Query: 87 ------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138 R++ ++ V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 80 AKYNLDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHN 139 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G S +G + Q+ TT S I + + L+ G ++E SSHGL Q+ Sbjct: 140 LLGGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQY 199 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E + Sbjct: 200 RAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTK--AQVLNADDEVGREWL 257 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNA 315 + NA + +K + Q V I+ E + + L G F V N Sbjct: 258 AKLPNAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNL 317 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMI 372 L + +G D ++E L V GR E V + + VDYAHT ++LE Sbjct: 318 LTTLASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKA 377 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ED KI A I Sbjct: 378 LQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKIMANI 437 Query: 433 IHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 438 LKGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 483 >gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes L99] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/484 (32%), Positives = 238/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243 SSH L Q R+ G F NL +DH+DYH T Y NAK LF +L Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M+ A A + Q F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I + LE + V GRFE V + Sbjct: 285 TPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D + I Sbjct: 344 AFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ DV+++AGKGHE Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQLI 467 >gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 1005 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 164/503 (32%), Positives = 252/503 (50%), Gaps = 22/503 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 LQ++ ++ + I+ L + I+ V+SDSR + G +FVAI G DG FI Sbjct: 9 NLQEVQLEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIR 68 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--A 119 A+ +GA A++ ++F + + V + RK L+ A YGK + +L Sbjct: 69 SAVERGAAAVIC------EEFPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIG 122 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ A + + +G+S+ IG I TTP L + Sbjct: 123 VTGTNGKTTTAKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQML 182 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G +E SSH L R+ GI+ A FTNL ++H+D+H+T Y AK +LF++L Sbjct: 183 EAGCKAAVMEVSSHALVLQRVYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLS 242 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQ-----GKFIHLKKVCAIHNKQQV 291 P + A++ DD Y++++ R + C + G Q + + + Sbjct: 243 P-DGFAVLNIDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTI 301 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + + LPG F V N L AA + + + + + L + V GR E VG Sbjct: 302 VLHFPDESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGE 361 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + +G +VDYAHT ++L L + + + R+IVVFGCGG+RD+ KR MG+IA ++ Sbjct: 362 SRQGWMAFVDYAHTPDALFKALDALHGLKEDASRLIVVFGCGGNRDKEKRSEMGRIASEI 421 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD I+T DNPR EDPE+I I GI G ++ +R EAIR A+ ML D+L+VAGK Sbjct: 422 ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGK 481 Query: 468 GHETVHIVTNGEKKMSVDCDIIR 490 GHE + G K D II+ Sbjct: 482 GHEKYQEIA-GHKYFFSDQAIIK 503 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 53/375 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F+A+ G DGH FI +GA +VS + + S +V Sbjct: 566 DSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGFIVT 625 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+T L A+ + +LA+ G++GK++ V + + F++ +S Sbjct: 626 DDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLG----TGFRV----HMSE 677 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GS-----F 209 ++N L P L+ L +G T ++V G++ H + + L A GS Sbjct: 678 GNRNNHLGVP--------LTLLQLRGDTDIAV--VEMGIN-HPGEMVLLAAIGSPTHALL 726 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-------------V 256 TN+G +H+++ A++ LF+ L A + DD Sbjct: 727 TNIGHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMA 786 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + H+ R +SV G L +C+I + VT++ GK V NA+ Sbjct: 787 TRSEHSCWARDISVNSAGALSFL--LCSIAGSEPVTLNFTGK-----------HNVMNAI 833 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 AA + G+ + E LE+L PG ++ G RI D Y S+S+ + Sbjct: 834 AAATVGHYFGLSLCQIREGLERLTPAPGWKRLEVLDACGVRILNDTYNANSDSMRKAIDA 893 Query: 376 IRTIT-SGRIIVVFG 389 + + +G+ + V G Sbjct: 894 LCDLPGAGKRVAVLG 908 >gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Listeria monocytogenes FSL N1-017] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD S M++A A + Q F + I+ G FD Sbjct: 236 AVLNADDEESVR-MQKATAAHVITFGIKQQADF----------KASNIRITSHGSAFDLR 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AIR A+ D++++AGKGHE Sbjct: 404 FTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKGHED 463 Query: 472 VHIV 475 ++ Sbjct: 464 YQVI 467 >gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Syntrophobotulus glycolicus DSM 8271] Length = 494 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 169/478 (35%), Positives = 248/478 (51%), Gaps = 51/478 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I DSR + G I++ I G DGH F A+ GA A+ V L + Sbjct: 30 ITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKAGAAALAVERYLPL---------D 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V N R+ A+ ++G +P ++ VTGT+GK++V ++ I Q +G + Sbjct: 81 VPQIKVRNIRQTAGKIAAAVFG-YPSQKLELIGVTGTNGKTTVTHLIESIAQENGKKTGL 139 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG S I + + TTP + L+ + +GV +E SSH LD R+ G + Sbjct: 140 IGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEVSSHALDLGRIVGCRFD 199 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYHQ+ + Y AK LF ++ E P AI+ ADD S+ +M + Sbjct: 200 TAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQM-SGEKPGQKAILNADDQASEYLMTKTS- 257 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVY 313 CRV++ G + K A + +++ +S +G FD + F PG+F VY Sbjct: 258 --CRVVTYGIEKK--------ADYQAEKIVLSDKGIYFDLVYKKIREKVFFATPGKFSVY 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLE 370 N L A + G +S V + L L VPGRF+ + R G+ + +DYAHT + LE Sbjct: 308 NVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSI----RKGQPFLVIIDYAHTPDGLE 363 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L R IT R+I VFGCGGDRD+GKRP+M + A +D IVT DNPR+EDPEKI Sbjct: 364 NVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYVIVTSDNPRTEDPEKIIG 423 Query: 431 EIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ G ++ +R AI A M + D +++AGKGHE I+ G K+ D Sbjct: 424 DILPGM-GKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKGHEDYQII--GTSKIHFD 478 >gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium phaeobacteroides DSM 266] Length = 512 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 254/484 (52%), Gaps = 31/484 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRS 88 ++ +SSDSR + G +F+A+ G DGH FI A+ +GA A++ L D S Sbjct: 25 VSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVERGAAAVLCEEIPPVLPDAS----- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V++ R+ L+L A + YG + +++ VTGT+GK++ A + + G+ + Sbjct: 80 -LPYLRVEDARQALALAARQFYGFASDALHVIGVTGTNGKTTTARLITAMLNACGIRTGY 138 Query: 147 IGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + + +F + TTP L + G + +E SSH L R+ GI Sbjct: 139 IG--TNLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAVMEVSSHALVLQRVYGIT 196 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A FTNL +H+D+H+T Q Y AK +LFE+L P + A+I +DD ++E++ + + Sbjct: 197 FHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQLSP-QGFAVINSDDPRAEEMVSKINPE 255 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 ++ G+ + + + S+ FP LPG++ V N Sbjct: 256 KRFCCTLDQTGRVA--GDASRRFSAELIDQSIASATIRLCFPDAQQTISTVLPGQYNVMN 313 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L AA + +G+ S +V L+ L V GR E + R ++VDYAHT ++L L Sbjct: 314 LLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFVDYAHTPDALFKALS 373 Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + S R+IVVFGCGG+RD+ KRP MG+IA++ AD+ I+T DNPR EDPE I EI Sbjct: 374 TLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVENADLVILTSDNPRDEDPEMIIDEI 433 Query: 433 IHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GI K +R +AIRTA+ +L DVL+VAGKGHE T GEK D + +R Sbjct: 434 EKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAGKGHEQYQ-ETAGEKSFFSDQETLR 492 Query: 491 EILG 494 L Sbjct: 493 NALA 496 >gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 489 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 164/462 (35%), Positives = 241/462 (52%), Gaps = 31/462 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR I G IFVA+ G DGH FI AI +GA+ I+VS Q Sbjct: 34 MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145 +++ N RK L + AS YG +NI L VTGT+GK++ ++Q+ R G + Sbjct: 87 VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 146 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG + TTP + L + + +G+ ++ +E SSH L+ R++ ++ Sbjct: 147 KIGKEVIEAPN------TTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEFD 200 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+DYH+T + YF AK +LF +L K + I+ DD Y K + + H Sbjct: 201 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKILNVDDEYGKRLQEEFHGISY 259 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G QGK + + K++V +S+ GK + + G F +YN L + L + Sbjct: 260 GTKQAGVQGKILGFE-----GGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + +E L PGRFE V + + +DYAHT ++LE IL+ I+ I + +II Sbjct: 315 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 373 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I E+ G I Sbjct: 374 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEVKGGFTKENHICVL 433 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R EAI I K D++++AGKGHET I+ G KK D Sbjct: 434 ERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 473 >gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF 19.5.1] Length = 497 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/495 (31%), Positives = 258/495 (52%), Gaps = 55/495 (11%) Query: 1 MKLQDLIYKDFPELI--NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL LI EL+ N + + + ++ ++N+V S+SR ++ G +F+ + G D HL Sbjct: 1 MKLSHLI-----ELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHL 55 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPE 115 P+ +GA A++ + + PI+ V ++R L + LY HP Sbjct: 56 LAPELQERGAAALIAEKKID-------VDLDIPIIYVKSSR----LAEAHLYMEINDHPY 104 Query: 116 NILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDN-RLTTPSPIYL 170 L VTGT+GK++V + + I + S +G + I + N + TTP P L Sbjct: 105 KKLTTIGVTGTNGKTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATL 164 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 AK + + + + +E SSHGL HR+DG++ TN+ RDH+D+H + + Y+ K Sbjct: 165 AKYMKMAVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTK 224 Query: 231 MRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 +R+F L P A++ +D+ ++ + R ++++ G+ + + + Sbjct: 225 LRIFNLLKPV-GKAVVNSDNVNIGDIKLPRD-----KIITYGFGNE--------SDFRME 270 Query: 290 QVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + IS G F P L GE YN ++ D+ +LE + Sbjct: 271 NLEISRTGMYFTVETPFGSKHKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTF 330 Query: 340 HVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 VPGRFEFV ++ G + VD+AHT ++LE +LK + ++ GRII+VFG GGD D+GK Sbjct: 331 SGVPGRFEFVEEATKYGFDVLVDFAHTPDALEKLLKTAKKLSEGRIIIVFGAGGDADKGK 390 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455 RP+MG+IA AD+ I+T D+P+ EDPE+I +I GI ++ +R EAI A+ + Sbjct: 391 RPLMGEIASRFADVVILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTL 450 Query: 456 LNKQDVLVVAGKGHE 470 N+QD +++AG+GHE Sbjct: 451 ANRQDTVLIAGRGHE 465 >gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prevotella ruminicola 23] Length = 483 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 167/495 (33%), Positives = 261/495 (52%), Gaps = 32/495 (6%) Query: 13 ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + + Q + +I V+ DSR I+AG +FVAI G DGH FIP+AI GA A+ Sbjct: 5 ELLKNVEVLNTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELGATAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 + QD T + V +T + A++ YG + + VTGT+GK+++ Sbjct: 65 LCEKLPEEQDPKVTF------VQVASTESCVGEVATQFYGDPSRKLKLVGVTGTNGKTTI 118 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185 A+ + + ++ G + G ST+ ++ +D + TTP PI L + L+ + G + Sbjct: 119 ATLLYNMFRKFG---HKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYA 175 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y +AK F+ L K++ AI Sbjct: 176 FMECSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDG-LEKDAFAI 234 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ADD + VM + A + S F K+ H + + + + GK+ F Sbjct: 235 TNADDK-NGMVMVQNCKANVKTYSTRTMADF--KAKIIECHF-EGMYLDINGKEVGVQF- 289 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F V N L G + +G +L + L V GR E + + G VDYAHT Sbjct: 290 -IGKFNVSNLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIHS-PEGYTAIVDYAHT 347 Query: 366 SNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++LE +L I + + G++I V G GG+RD+GKRPIM + A+ +D I+T DNPR E Sbjct: 348 PDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVIITSDNPRFE 407 Query: 424 DPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +P+ I +++ G+ + +R EAIRTA + K DV+++AGKGHE + G Sbjct: 408 EPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKGHEDYQEI-KG 466 Query: 479 EKKMSVDCDIIREIL 493 K D ++++EI Sbjct: 467 VKHHFDDKEVVKEIF 481 >gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus amyloliquefaciens FZB42] gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42] Length = 490 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 252/491 (51%), Gaps = 52/491 (10%) Query: 13 ELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L+ L P+Q + + I + DSR ++ G +FV I G DGH F +A GA A Sbjct: 5 KLLTYLMAEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAA 64 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 IV + + P+++V +++ LS+ + YG+ + + + +TGT+GK+S Sbjct: 65 IVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115 Query: 129 VASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 V +I +++G + IG T I +F N TTP + L K ++ + V Sbjct: 116 TTHMVDEIFKKAGRQTGLIG-TMYIKIGDETFPVKN--TTPESVTLQKTFKKMNDEHVDT 172 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKE 241 +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF +L E Sbjct: 173 AIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHE 232 Query: 242 SP--AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P A++ ADD S E + AH +L+ G + + K Q+ IS +G Sbjct: 233 KPKRAVLNADDKASAYFEKVTAAH-----ILTYGIENDADVMAK--------QIEISAQG 279 Query: 298 KDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 F+ + P L G F VYN L AA IA G+ + LE+L V GRFE Sbjct: 280 TSFELVTPKGTKQITVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFEL 339 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V N + + VDYAHT +SLE +L + +T G++ VV GCGGDRD+ KRP M +IA+ Sbjct: 340 VNHN-QPFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVR 398 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 +AD I T DNPRSEDP I ++ G+ G + NR +AI AI K DV+++AG Sbjct: 399 IADEPIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAG 458 Query: 467 KGHETVHIVTN 477 KGHET + N Sbjct: 459 KGHETYQQIGN 469 >gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides clarus YIT 12056] Length = 482 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 258/497 (51%), Gaps = 46/497 (9%) Query: 19 SIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 +I P+Q E+ I V+ DSR + AG +F+A+ G + DGH +IP AI QGA A++ Sbjct: 9 AIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQGAIAVLC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +D + + V ++ + A+ YG ++ VTGT+GK+++A+ + Sbjct: 67 ----EDMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP P+ L + L ++ G + +E Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + ++ D Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKSAFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ R + R LS ++GK + H + + N ++ + GK Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK----- 292 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F N L G + +G VL L LH V GRF+ + + +G VDYA Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSI-RSPKGITAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + +GR +I V G GG+RD+GKRPIM K + L+D I+T DNPR Sbjct: 346 HTPDALVNVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 E+P+ I +++ G + I +R AI+TA + DV++VAGKGHE + Sbjct: 406 FEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKGHENYQEI- 464 Query: 477 NGEKKMSVDCDIIREIL 493 G K D ++++EI+ Sbjct: 465 KGVKHHFDDKEVLKEIM 481 >gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas fluorescens Pf0-1] Length = 487 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 242/469 (51%), Gaps = 18/469 (3%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 IFP + I E++ DSR+++AG +F+A+ G + DG I A+ +GA A+ AY + Sbjct: 8 IFPHAGHDLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAV----AYEV 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137 + + + P++ V LS A R YG+ H N++ VTGT+GK+SV V Q Sbjct: 64 EGATVLPITEVPLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQAL 123 Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G +G S Q TTP+PI + L L G V++E SSHGLDQ Sbjct: 124 DLLGQHCGIVGTLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + TNL RDH+DYH T +AY AK +LF ++ DD + +++ Sbjct: 184 GRVTALAFDVAVMTNLSRDHLDYHGTMEAYAEAKAKLFA--WNDLKCRVVNLDDDFGRQL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S+ ++++++ + + T+ + L G F + N L Sbjct: 242 AAEKRESRLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFNLSNVL 301 Query: 317 VAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A G + G+D AL +L+ L KL GR + +G ++ + VDYAHT ++LE +L Sbjct: 302 AAVGALL--GLDYALDEILKVLPKLEGPAGRMQRLGGGTQP-LVVVDYAHTPDALEKVLT 358 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R G+++ +FGCGGDRD+GKRP+M ++ LAD +VTDDNPR+EDP I +I Sbjct: 359 ALRPHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDDIRA 418 Query: 435 G---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 G + R +AI I + DV+V+AGKGHE + NGE+ Sbjct: 419 GFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKGHEDYQEI-NGER 466 >gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Dokdonia donghaensis MED134] Length = 487 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 252/477 (52%), Gaps = 31/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +V DSR +FVAI G + DGH +I +A+AQGA AI+ ++ I + Sbjct: 24 ITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGALAIIC------EEMPQQIVNG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +T L+ AS YG N+ + +TGT+GK+++AS + Q+ +++G ++ Sbjct: 78 ITYVKVADTSSALATIASNYYGNPSANLKLIGITGTNGKTTIASLLYQLFKKAG---YKT 134 Query: 148 GPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ + TTP + + K L+ +S+ GV + +E SSHG+ Q R +G+ Sbjct: 135 GLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVSSHGIHQKRTEGLH 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH+T Y + K + F+E LPK + A++ DD +++ Sbjct: 195 FEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDE-LPKTAFALVNNDDKNGPVMVQN---- 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + V Y K + + N Q + ++ +D + L G F YN L Sbjct: 250 -TKAKKVTYALKSYADYRAQILEN-QLSGLLLKVQDQEVWVKLIGSFNAYNLLAIFAAAE 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382 + +D L+ L +L V GRF++ + I VDYAHT ++L+ +L+ I I + Sbjct: 308 LLELDQMEALQLLSELESVSGRFQYFISEGNVTAI-VDYAHTPDALKNVLETINDIRTKN 366 Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 +I V G GGDRD KRP MG IA L+ AI+T DNPRSE+PE I +I G+ Sbjct: 367 EELITVIGAGGDRDTTKRPKMGNIASALSTKAIITSDNPRSENPEAIIEQIEAGVEPIHY 426 Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R +AI+TA ++ N D++++AGKGHET + NGE+ D I++E L Sbjct: 427 KRILSITDRKQAIKTACQLANAGDIILIAGKGHETYQEI-NGERFDFDDYKIVQETL 482 >gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella oris F0302] Length = 483 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 257/478 (53%), Gaps = 31/478 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR I+AG +FVA+ G + DGH FI +AI GA +++ +D ++ Sbjct: 22 EITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIELGAISVLC------EDLPEVLQE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V++T + A+ YG H ++ VTGT+GK+++A+ + + ++ G + Sbjct: 76 GITYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTIATLLYNMFRKFG---HK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L + L+ + G + +E SSH + Q R+ G+ Sbjct: 133 VGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFMECSSHAIHQKRIGGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K FTNL RDH+DYH+T + Y NAK F+ LPK++ AI ADD + +M + Sbjct: 193 KFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMIMVQNTK 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A + S+ F ++ H + + + ++G++ F G+F V N L G Sbjct: 251 ATVKTYSIRTLADF--RARILECHF-EGMYLEIDGREVGVQF--IGKFNVSNLLAVYGAA 305 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I +G VL L LH V GR E + + G VDYAHT ++L +L I + G Sbjct: 306 IMLGKKPEDVLLVLSTLHSVNGRLEPIHS-PEGFTAIVDYAHTPDALANVLNAIHEVLDG 364 Query: 383 R--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 + +I V G GG+RD+GKRP+M + A+ +D I+T DNPR E+P+ I +++ G+ Sbjct: 365 KGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVIITSDNPRFEEPQDIINDMLAGLNEQQ 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I +R EAIRTA M K DV++VAGKGHET + G K D +++ EI Sbjct: 425 MRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHETYQEI-KGVKHHFDDKEVLHEIF 481 >gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 487 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 239/467 (51%), Gaps = 23/467 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G + DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S + +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I G FIE R +AI I N DV+V+AGKGHE Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457 >gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. Tu6071] Length = 487 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 258/478 (53%), Gaps = 33/478 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR +++G++FVA+ G + DGH + QA+ QGA A +VS+ + + S Sbjct: 23 VTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAVAALVSTT------AHPLPSA 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I V++T SL ASRL+G+ ++++TGT+GK+S A+ ++ + + LS+ + Sbjct: 77 LTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAAMLESVI--AALSTAPV 134 Query: 148 GPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G T I + TTP + L L Y++ QG V +EASS L QHRLD Sbjct: 135 GVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVVMEASSLALWQHRLD 194 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNL DH+D H T AY AK+ LF + S A++ DD S+E+++R Sbjct: 195 HAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGM---SSDAVVNTDDPVSQEILERM 251 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319 R + G + + + V +G+++ P+PG F V NAL A Sbjct: 252 ----PRATTFGMDKTADFTARAFEVSATGTRFLLVHDGQEYPAHLPIPGRFNVANALAAV 307 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +C +G ++ L LE L +PGR E + + G I VDYAH+++SLE L+ +R + Sbjct: 308 AVCHRLGYETKAALHALETLPQIPGRMETL-RRADGTSIVVDYAHSADSLEKTLRTLREV 366 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +SGR++ VFGCGGDRD KR MG +A L+D ++T DNPR+EDPE I + G+ Sbjct: 367 SSGRLLTVFGCGGDRDASKRIPMGSLAGHLSDHVVITSDNPRTEDPETIINAVERGVRTT 426 Query: 440 IEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREI 492 +RI AI A+ + D ++VAGKG ET ++ GE + D ++RE+ Sbjct: 427 DTPYDRITDRRAAIARALSLAEPGDTVLVAGKGAETYQLI--GEAALPFEDMAVVREL 482 >gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides fluxus YIT 12057] Length = 482 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 257/492 (52%), Gaps = 55/492 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL DL+ +I P+Q + +I V+ DSR I+AG +F+A+ G + DGH Sbjct: 1 MKLSDLLK----------AIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGH 50 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 +IP AI +GA AI+ +++ +++ + V ++ + A+ YG Sbjct: 51 AYIPAAIEKGAVAILC------EEWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKM 104 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLA 171 ++ VTGT+GK+++A+ + + G +++G ST+ ++ D + TTP PI L Sbjct: 105 ELVGVTGTNGKTTIATLLYDTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLN 161 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + L ++ G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK Sbjct: 162 RLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK 221 Query: 232 RLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAI 285 + F+E +PK + ++ DD ++ + + R LS ++GK + H + + Sbjct: 222 KFFDE-MPKSAFSLTNLDDRNGLVMTQNTRSKVYTYSLRSLS-DFKGKVLESHFEGMLLD 279 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 N ++ + GK F N L G + +G VL L LH V GR Sbjct: 280 FNNHELAVRFIGK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGR 328 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMG 403 F+ + + +G VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM Sbjct: 329 FDAI-RSPKGYTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMA 387 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNK 458 K + L+D I+T DNPR E+P+ I +++ G I I +R EAI+TA + Sbjct: 388 KESARLSDRVIITADNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQP 447 Query: 459 QDVLVVAGKGHE 470 DV++VAGKGHE Sbjct: 448 GDVILVAGKGHE 459 >gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium gonidiaformans ATCC 25563] Length = 479 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 164/465 (35%), Positives = 244/465 (52%), Gaps = 37/465 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR I G IFVA+ G DGH FI AI +GA+ I+VS Q Sbjct: 24 MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 76 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145 +++ N RK L + AS YG +NI L VTGT+GK++ ++Q+ R G + Sbjct: 77 VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 136 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG + TTP + L + + +G+ ++ +E SSH L+ R++ ++ Sbjct: 137 KIGKEVIEAPN------TTPESLDLVRMIKKAYEEGLEYIIMEVSSHALELGRVNMLEFD 190 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+DYH+T + YF AK +LF +L K + I+ DD Y K + + H Sbjct: 191 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKILNVDDEYGKRLQEEFHGISY 249 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G QGK + + K++V +S+ GK + + G F +YN L + L + Sbjct: 250 GTKQAGVQGKILGFE-----GGKERVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 304 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + +E L PGRFE V + + +DYAHT ++LE IL+ I+ I + +II Sbjct: 305 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 363 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444 +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I E+ GF ++ + Sbjct: 364 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KGGFTKENHI 420 Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R EAI I K D++++AGKGHET I+ G KK D Sbjct: 421 CVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 463 >gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 487 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 239/468 (51%), Gaps = 25/468 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + AL+ L G V++E SS Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF P + +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412 Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I PGF+ R +AI I DV+V+AGKGHE Sbjct: 413 FDDI---RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHE 457 >gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii C-113] Length = 519 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 245/472 (51%), Gaps = 19/472 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 RER+I+ +S DSR + G +F A G ++ GH +I A+ QGA AIV + T Sbjct: 36 RERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIVYDPVIPVSPVIQT 95 Query: 86 IRS--NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 N P++ + + L + A+R Y + +L VTGT+GK+SV+ F+ Q R Sbjct: 96 QLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTSVSHFLAQALHRQE 155 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG + Q + LTTP I + + L+ + + + +E SSH L Q R+ Sbjct: 156 VPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVLEVSSHALGQGRVS 215 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ FTNL R+H+DYH Y AK RLF + P A+I DDA + + Sbjct: 216 GVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQ--PGLRHAVINGDDAAGRAFLA-- 271 Query: 261 HNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 N V ++ Y +H K+ + +TI + PL G F YN L Sbjct: 272 -NLPPEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQSAWGEGQLTCPLLGRFNAYNLL 330 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G +A+G+ L+ L ++ V GR E +G + VDYAHT ++LE +L+++ Sbjct: 331 AALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPLLVVDYAHTPDALEQVLRSL 390 Query: 377 RT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ VFGCGG+RD+GKRP+MG A LAD ++TDDNPR+EDP +I +I+ Sbjct: 391 RAHLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLADFVMLTDDNPRNEDPIQIIVDILS 450 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 GI P + + NR EAI A ++ +D++++AGKGHE + ++ S Sbjct: 451 GIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHEEYQQIGAEQRPFS 502 >gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 490 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 165/470 (35%), Positives = 237/470 (50%), Gaps = 31/470 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S Sbjct: 14 ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q + + Sbjct: 74 MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAQM---- 128 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q+R Sbjct: 129 LGETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + ++ Sbjct: 189 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLE 246 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A + VG+ G ++ +V N + + L G F V N Sbjct: 247 QLPQAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSN 306 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMIL 373 LVA +++G +L L V GR E N+ G + VDYAHT ++LE L Sbjct: 307 LLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF--NALGKPTVVVDYAHTPDALEKAL 364 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 365 AAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADIL 424 Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ ++ G+ R EA+ +AI DV+++AGKGHE +V N Sbjct: 425 SGL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 471 >gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 487 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 245/467 (52%), Gaps = 42/467 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + +F+ I G K G L+I +AI +GA AI+ +++ Sbjct: 23 IEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGAVAILSEKEIAIE--------G 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 T + V+N+RK L+ ASR Y K P N L VTGT+GK+S+ V+ I G + Sbjct: 75 TTTIKVENSRKALAAVASRFY-KFPTNTLKLVGVTGTNGKTSITYMVKSIL---GYYNIN 130 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TIS++ + + TTP + L K L+ + Q V +E SSH L+ R+D Sbjct: 131 VGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEVSSHALELGRVDHT 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K G FTNL +H+D+H+ Y NAK +LF II DD + K + + Sbjct: 191 KFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLF---YKTTLCNIINVDDIHGKMIAEELKE 247 Query: 263 AGCRVLSVGYQGKF--------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +++ G + I+LK V Q+ + + K+F +PG F VYN Sbjct: 248 EQIPLITFGMNQQADVYATDLKINLKGVSF-----QLHMGQDSKEFHV--KIPGLFTVYN 300 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ + +C +G+ + LE + VPGRFE V R I +DYAHT ++LE IL Sbjct: 301 AMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVI-IDYAHTPDALENILI 359 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R RII VFGCGGDRD+ KR IMG+I+ +D +I+T DNPR+E+P KI I Sbjct: 360 STRKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITSDNPRTEEPLKIIEMIED 419 Query: 435 GIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 GI ++ +R AI A+++ ++D++++AGKGHE ++ N Sbjct: 420 GIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKGHEKTQVIGN 466 >gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae D-4968] gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Legionella longbeachae NSW150] Length = 483 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 176/508 (34%), Positives = 258/508 (50%), Gaps = 59/508 (11%) Query: 17 QLSIFPMQWRERKINE-----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +LS W ++ I + + +DSR I G +F+A G DG LFI A++ GA A+ Sbjct: 2 KLSQLLKPWMKQSIMDCLITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAV 61 Query: 72 VVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126 AY DF + + + P + V L A + Y +P NI VTGT+GK Sbjct: 62 ----AYDPADFPLNCVLPESVPCIPVPELSTQLPNIAKQFY-DNPACFLNITGVTGTNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RL---TTPSPIYLAKALSYLSS 179 +++A + Q G + IG + Q N RL TTP + L K L S Sbjct: 117 TTIAYQLAQAHHLLGQKAAYIG------TIGQGNVNELRLVDNTTPDSLCLQKLLHQYKS 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 Q + V +E SSH L QHR+D ++ FTNL DH+DYH + + Y AK LF Sbjct: 171 QDMRQVCMEVSSHALAQHRVDALEFNQAIFTNLTLDHLDYHHSMENYARAKSLLFA---- 226 Query: 240 KES--PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +ES AII DDAY K +M A + L+ G IH + C + K ++ + G Sbjct: 227 RESLEWAIINQDDAYHK-IMAAAIKPQVKKLTYG-----IH--QDCDVRAKNW-SMDIYG 277 Query: 298 KDFDFLFPLP---------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + P G+F +YN+L +A V++ + +L PGR E Sbjct: 278 TEIEVHSPWGKHHIKIKSLGQFNIYNSLAIFSSLLAANYIPEQVVDVMAQLKAAPGRMEI 337 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V + + VDYAHT ++LE L + + GR+ VVFGCGGDRD+ KRPIMGK+A Sbjct: 338 V---AHSPYVLVDYAHTPDALENALMTLNQLKKGRLWVVFGCGGDRDKTKRPIMGKVADK 394 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 LAD ++T DNPR+E+P+ I EI GI I+ NR EAI A++ ++ DV+++A Sbjct: 395 LADEIVITSDNPRTEEPQIIINEISKGIALSTKVIQLVNREEAIAYALDKADENDVILIA 454 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE+ + + + S D D++R ++ Sbjct: 455 GKGHESYQQIGTVKHQFS-DQDVVRSLI 481 >gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2207] Length = 516 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 162/474 (34%), Positives = 248/474 (52%), Gaps = 41/474 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR + G +F+A+ G + +G +I QA+ QGA A+++ + D + + Sbjct: 30 ITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETADHG---QLS 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V +F+S A Y HP + A+TGT+GK++ A + + + G + Sbjct: 87 VPVIAVPKLSEFVSDIAGSFYA-HPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAGC 145 Query: 147 IGPTS--TISSFAQDNR---------------LTTPSPIYLAKALSYLSSQGVTHVSVEA 189 +G T+++ A DN+ LTTP + + + L+ L G V++EA Sbjct: 146 VGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAMQRILAELRDAGARRVAIEA 205 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R+ G+++ FTNL RDH+DYH +Y AK RLF + A+I D Sbjct: 206 SSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAKSRLFA--MSGLKHAVINLD 263 Query: 250 DAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKV---CAIHNKQQVTISVEGKDFDF 302 D + ++ N V + Y IH ++ + + + VT G+ Sbjct: 264 DNVGRLILA---NLDPAVDGITYSFENHTADIHCDRIELGASTLSAELVTPWGRGR---L 317 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G+F + N L G G +L KL VPGR E V ++R + VDY Sbjct: 318 TSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIVDPSARP-LVVVDY 376 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++L+ L+ +R SG+++VVFGCGGDRD+GKR MG++A LAD+ +VT DNPRS Sbjct: 377 AHTPDALDKALRALRLQCSGKLVVVFGCGGDRDRGKRAEMGRVADQLADLVVVTSDNPRS 436 Query: 423 EDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E PEKI +++ GI + +R +AIR AI D++++AGKGHE IV Sbjct: 437 ESPEKIIDQVLLGISRKVLAVADRRDAIRAAINAAAVDDIVLIAGKGHEAYQIV 490 >gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica subsp. palearctica Y11] Length = 496 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 234/469 (49%), Gaps = 29/469 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S Sbjct: 19 ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q + + Sbjct: 79 MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q+R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A + VG+ G ++ +V N + + L G F V N Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++G +L L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALV 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILS 430 Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ ++ G+ R EA+ +AI DV+++AGKGHE +V N Sbjct: 431 GL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 476 >gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-272] gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-227] Length = 495 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAAGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii] Length = 532 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 160/512 (31%), Positives = 253/512 (49%), Gaps = 40/512 (7%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + I+ + DSR + +G +FV +G DGH F+PQA QGA Sbjct: 5 ELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAEQGAV 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 IV + + + S +++V +T LS A YG+ E+ ++ +TGT+GK+ Sbjct: 65 VIVATKEVEIGE------SVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 + + ++ I + GL + IG S QD TTP +YL K ++ + Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244 +E SSH L Q R I FTNL RDH+DYH+ + +Y AK +LF ++ P Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD + + N V++ G + +H + + V + + + Sbjct: 239 VVNIDDPNAGYFVSLG-NPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEIS 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G VYN L A + IA+ ++ +E++ VPGR E V + + VDYA Sbjct: 298 SGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQPFAVIVDYA 356 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L +L +R RII V GCGGDRD+GKRP+M KIA +++ I T DNPRSE Sbjct: 357 HTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIFTSDNPRSE 416 Query: 424 DPEKIRAEIIHGIPGFIEK---------------GNRIE-------AIRTAIEMLNKQDV 461 DP +I +++ G+ +++ GNR+ A+R A+ M + D Sbjct: 417 DPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDA 476 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +V+AGKGHE I+ E+K D + RE L Sbjct: 477 VVIAGKGHEKYQIIGK-ERKYHDDREECREAL 507 >gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-28] Length = 491 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 253/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L ++ A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + D Sbjct: 237 VLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I ++I G + +R EAIR AI +D++++AGKGHET I+ Sbjct: 410 RSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466 >gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-2] Length = 491 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 250/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVM 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 487 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 166/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I G FIE R +AI I N DV+V+AGKGHE Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457 >gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides finegoldii DSM 17565] Length = 483 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 252/481 (52%), Gaps = 47/481 (9%) Query: 14 LINQL--SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+N+L +I P+Q +I ++ DSR ++AG +F+A+ G + DGH +IP AI++GA Sbjct: 2 LLNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 AI+ +D + V ++ + A+ YG + + VTGT+GK Sbjct: 62 TAILC------EDMPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 +++A+ + + G +++G ST+ ++ D + TTP PI L + L ++ +G Sbjct: 116 TTIATLLYNTFRYFG---YKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGC 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ LPK + Sbjct: 173 KYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNA 231 Query: 243 PAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVE 296 ++ DD ++ + + R LS ++G+ + H + + N ++ + Sbjct: 232 FSLTNLDDKNGLVMTQNTRSKVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFI 290 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK F N L G + +G VL L LH V GRF+ V + G Sbjct: 291 GK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSKD-GV 338 Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I Sbjct: 339 TAIVDYAHTPDALTNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVI 398 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T DNPR E+P+ I +++ G+ + +R EAIRTA + K DV+++AGKGH Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKGH 458 Query: 470 E 470 E Sbjct: 459 E 459 >gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock4-18] Length = 491 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 253/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L ++ A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRKKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + D Sbjct: 237 VLNSDDPVTEEYMR---STAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + +G + + GCGGDRD+ KRP+M +A++ A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I ++I G + +R EAIR AI +D++++AGKGHET I+ Sbjct: 410 RSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHETYQII 466 >gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium baculatum DSM 4028] Length = 476 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 158/502 (31%), Positives = 251/502 (50%), Gaps = 50/502 (9%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQ+++ + R + + S + G +FVA+ G + DG FI A+A+GA +V Sbjct: 1 MNQMNLQNVLEMLRSGTGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVHK 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 ++ + L V N + L + A G I+ VTGT+GK++ A Sbjct: 61 EGVAVAPAA-----GVSTLAVPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHL 115 Query: 133 VQQICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + +GL + IG P + +++ +TTP + L + + GV + Sbjct: 116 IHFLLSANGLMTGLIGTVHCSWPGAKVAAT-----MTTPDCLSLHGIIGRMVRDGVEDLV 170 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R G+ + G F+NL +DH+DYH + YF AK RLF + + + ++ Sbjct: 171 MEVSSHALDQERTAGLPMAVGVFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLV 230 Query: 247 YADDAYSKEV-MKRAHNAG-----------CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 DD Y + + M R G CR+L G +G + IS Sbjct: 231 NVDDEYGRRLKMMRPDLLGFGLDSEDAELRCRILGAGTEG--------------MTLGIS 276 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +G ++ L G YN L A G + +G+ +A L + PGR E V N+R Sbjct: 277 HDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGLTAAQC-ACLSQALGAPGRLERV-PNTR 334 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I++DYAHT ++LE + ++++ R+I VFGCGGDRD KRP+MG AD+A+ Sbjct: 335 ELNIFIDYAHTPDALEKVSVALKSMGFKRLITVFGCGGDRDASKRPLMGAAVARHADVAV 394 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+EDPE I +I G+ G + + +R +AI A++ + D L++AGKGHE Sbjct: 395 VTSDNPRTEDPESILDQIEPGLAGARLVLREVDRRKAIALAVQSMQPGDALLIAGKGHED 454 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 ++ EK+ D +++RE L Sbjct: 455 YQVIGT-EKRHFSDFEVVRECL 475 >gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum PSI07] Length = 514 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 241/486 (49%), Gaps = 34/486 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++AG +FVA ++GN DG IPQAI GA A++ + + A +R Sbjct: 32 DLTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPLR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD+ + A++ Y G ++ VTGT+GK+S + ++ Q R G Sbjct: 92 ----ILPVDDLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + TTP I L +L+ L G V++E SSHGL+Q R DG Sbjct: 148 AVVGTLGTGFVDALVATG-FTTPDAIQLQHSLAELHRAGARAVAMEVSSHGLEQGRADGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLT-GLR 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313 AG + G G+ + V + G FD P+ G F V Sbjct: 264 AGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFDIDGSFGRATVHSPMVGLFNVS 323 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L Sbjct: 324 NQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + IT +GR+ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I Sbjct: 383 RALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILD 442 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 443 MIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEI-GGRKRPFSDQE 501 Query: 488 IIREIL 493 +R L Sbjct: 502 HVRLAL 507 >gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 487 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF P + +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGLKQESRLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412 Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I PGF+ R +AI I DV+V+AGKGHE Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHE 457 >gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 486 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 166/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I G FIE R +AI I N DV+V+AGKGHE Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAQLIASANADDVVVLAGKGHE 457 >gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium diphtheriae NCTC 13129] gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium diphtheriae] Length = 513 Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 245/474 (51%), Gaps = 39/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ + DS + A IF A+ G K G + Q A A A+ V S + Sbjct: 32 EISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKA--AAALAVLSDHEGTQILVDSGE 89 Query: 89 NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 PI+ VD+ R+ L + ++ +YG H I+ VTGTSGK++ + +++ +GL Sbjct: 90 KRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGKTTTSYILERGLMAAGLHVGL 149 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T T I+ +LTTP L + S + ++GV+HV +E SSH L R+ G + Sbjct: 150 IGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHVVMEVSSHALALGRVTGTRFS 209 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL +DH+D+H T Q YF AK F+ P +++ +D + K + +RA Sbjct: 210 AAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKSVVCVNDLWGKNMAERAGADA 269 Query: 265 CRVLS----VGYQGKF----IHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQV 312 V + +Q + I + V A +H+ Q T D PLPG F + Sbjct: 270 ITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQST--------DVHLPLPGGFNI 321 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370 N +VA L ++G+D+ + + + VPGR E + RG VDYAH ++ Sbjct: 322 ANTVVALALAESVGVDTDAFIRGIADV-AVPGRMERI---DRGQEFLAVVDYAHKPAAVA 377 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +++ +R GRI VV G GGDRD GKRPIMG A AD+ IVTDDNPRSEDP KIR Sbjct: 378 VVIDTVRDQVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTDDNPRSEDPAKIRE 437 Query: 431 EII---HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 ++ HG+ G E G+R EAIR A++ D ++VAGKGHE ++ NG Sbjct: 438 AVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEVGQLI-NG 490 >gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa] Length = 777 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 162/508 (31%), Positives = 266/508 (52%), Gaps = 46/508 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ E +I + DSR + AG +FV VG K DGHL++ +A +GA Sbjct: 248 ELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEADKRGAV 307 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A+V S +++ +++V++T L A+ Y +N ++ +TGT+GK+ Sbjct: 308 AVVASKEVDIEETLGC----KALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGKT 363 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQGV 182 + A+ V+ + + GL + G ST++ + DN+L T P I + ++ + G Sbjct: 364 TTANLVKGMYEAMGL---RTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGT 420 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241 V +EA+S GL R D + FTNL RDH+D+H T++ Y NAK +LF ++ P+ Sbjct: 421 EAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPER 480 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKD 299 ++ DD + + + N V++ + K +H K + QV ++ Sbjct: 481 HRKVVNVDDPNAPFFIAQG-NQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGI 539 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G+ +YN L A + IA+G ++ +E++ VPGR E + G + Sbjct: 540 LEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFG-VI 598 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L +L ++R + RII V GCGG+RD+GKRPIM KIA D +D+ I+T DN Sbjct: 599 VDYAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTILTSDN 658 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLN 457 PR EDP I +++ G+ +++ G+R+ A+R A+ M Sbjct: 659 PRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGE 718 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + D++VVAGKGHET I G+KK D Sbjct: 719 EGDMVVVAGKGHETYQI--EGDKKEFFD 744 >gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leptospirillum rubarum] Length = 509 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 245/488 (50%), Gaps = 30/488 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83 K+ +S DSR ++ G +F+ G F+ +A+ +GA +V S S Sbjct: 28 KVLSLSDDSRQVENGALFLIRPGEGFRWE-FVDEALDRGASYLVADRKAFPEIDSRPALS 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRS 140 + IR + + +V+N + + AS +G P + L VTGT+GK++ + + +C+ Sbjct: 87 SRIRESAGLSLVENLPRAVGQLASSWWG-FPSSFLKVIGVTGTNGKTTSSFLTRSVCRAG 145 Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 GL IG + + TTP I + + G+ VS+E SSH LDQ RL Sbjct: 146 GLPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDRL 205 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVM 257 G FTNL RDH+DYH+T +AYF AK +L P S A+++ D Y + Sbjct: 206 AGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARLA 265 Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K G RVL+ G I +V + + T+ + L G + + N L Sbjct: 266 KELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNIL 325 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G A+G+ + E + L VPGRFE V + + G + VDYAHT ++L +L + Sbjct: 326 GAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPT-GFSVIVDYAHTDDALSNLLSAV 384 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T G++I VFGCGGDRD+GKRP MG +A L+D ++T DNPR+E+PE I EI Sbjct: 385 RPVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEI---E 441 Query: 437 PGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 PG E G +R AI AI D +V+AGKGHE I+ G++K+ D Sbjct: 442 PGLRETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKGHENYQIL--GKQKIHFDD--- 496 Query: 490 REILGLIL 497 REI L L Sbjct: 497 REIARLAL 504 >gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 491 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ ++ L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466 >gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI39] gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI39] Length = 495 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leadbetterella byssophila DSM 17132] Length = 485 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 248/462 (53%), Gaps = 42/462 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +++ DSR + G +FVA+ G + DGH +I AI GA A++ + + Sbjct: 22 EIEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGASAVLC------EVLPKMLEE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V+N+ K + + A YG + ++ VTGT+GK+SVA+ + ++ ++ G ++ Sbjct: 76 EVTYIQVENSAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVATLLFKLFRKLG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ + +D + TTP I L L + +G V +E SSH + Q R+ G+ Sbjct: 133 CGLISTVQNQIEDEIIPATHTTPDSITLNALLHEMHQKGCAFVFMEVSSHSVVQGRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260 G FTN+ +DH+D+H+T Y AK F+ L P + A+ DD K +++ Sbjct: 193 HFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDAL-PSTAFALTNVDDRNGKVMLQNTKA 251 Query: 261 --HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 H+ + ++ ++GK + C + Q +E + F L G+F YN L Sbjct: 252 EKHSYSLKNIA-DFKGKVLD----CGLFGLQ-----MEIDKQEVWFKLIGQFNAYNLLAV 301 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G + + + +L L +L PGRFE V ++ + I VDYAHT ++L+ +L+ I Sbjct: 302 YGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQTVGI-VDYAHTPDALKNVLETING 360 Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + G R+I V GCGG+RD+GKRP+M IA +L+D I+T DNPR E+PE I ++ GI Sbjct: 361 LRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVILTSDNPRFEEPEDILKDMEAGI 420 Query: 437 PGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHET 471 P I K R+ EAIR A+ + +D+++VAGKGHET Sbjct: 421 P--ITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHET 460 >gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis Bt407] gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 491 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 250/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI + D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKGHETYQII 466 >gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1] Length = 488 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 154/450 (34%), Positives = 236/450 (52%), Gaps = 23/450 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N + +DSR + +F A+ G +G ++ I G + VV + LQ R + Sbjct: 27 NCLETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQ------RDDI 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-----F 145 ++ V + K L +GK P ++AVTGT+GKSS+ ++ Q+ + G SS F Sbjct: 81 ELVSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTF 140 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +GP +S Q TTP + + +AL ++ +GV V+ EASSH LDQ R++G+ Sbjct: 141 GVGPLDRLSEAKQ----TTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRIEGVPFQ 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 F+NL RDH+DYH +Y AK RLF S +I DD Y+ + + A + C Sbjct: 197 TAVFSNLSRDHLDYHGDMNSYALAKRRLFS--FECVSHSIFCLDDGYAGFMAEGAARSSC 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIA 324 S ++K++ + + + G D PL G F V NAL A A L Sbjct: 255 HYYSEQDSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYG 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + D A ++ L L PGR + V + VD+AHT+++LE+ L+ ++ T+GR+ Sbjct: 315 VD-DKATLIRGLSTLTGAPGRMDKVQL-PNAPLVVVDFAHTADALEVALQAVKEHTNGRL 372 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---HGIPGFIE 441 I VFGCGGDRD+GKRP+M A+ AD +T DNPR+E E+I ++++ + F Sbjct: 373 ICVFGCGGDRDRGKRPLMMAAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAFSF 432 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + +R AI AI +DV+++AGKGHET Sbjct: 433 ELDRRMAIHQAILSAGPEDVILIAGKGHET 462 >gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa] Length = 487 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 157/470 (33%), Positives = 235/470 (50%), Gaps = 23/470 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P ++QL FP R+ I E++ DS ++ +F+ + G +DG I A+ +GA A Sbjct: 1 MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 59 V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + ++ S+ F++ ++ + S+ K PL Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHT 365 G F + N L A G + +G +L L +L GR + +G GG+ + VDYAHT Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGG---GGKPLVVVDYAHT 349 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E Sbjct: 350 PDALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEAS 409 Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A+I G F+ +R EAI I DV+++AGKGHE Sbjct: 410 AAIIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457 >gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC 43183] Length = 482 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 247/474 (52%), Gaps = 45/474 (9%) Query: 19 SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 +I P+Q E+ I V+ DSR + AG +F+A+ G + DGH +IP AI +GA A++ Sbjct: 9 AIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKGAIAVLC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +D + + V ++ + A+ YG ++ VTGT+GK+++A+ + Sbjct: 67 ----EDMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP PI L + L ++ G + +E Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F++ +PK + ++ D Sbjct: 180 SSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ R + R LS ++GK + H + + N ++ + GK Sbjct: 239 DKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNNHELAVRFIGK----- 292 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F N L G + +G VL L LH V GRF+ + + +G VDYA Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSI-RSPKGITAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + G++I V G GG+RD+GKRPIM K + L+D I+T DNPR Sbjct: 346 HTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 406 FEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKGHE 459 >gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittEE] Length = 488 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 243/484 (50%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + GL + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGLRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTKLPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|33598266|ref|NP_885909.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella parapertussis 12822] gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella parapertussis] Length = 945 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + + L V Sbjct: 35 DSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG T+ Sbjct: 90 AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D + LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A L Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260 Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 GY QG +H + + A + Q T+++ + + L G+ + N L+ AG Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSK 320 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376 +G + L + V GR + V ++G + VDYAHT ++L L + Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380 Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440 Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 GIP + +R AI + DV+++AGKGHET + G +K+ D Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 34/341 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV A+ + D + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I L+ +Q Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610 Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 D RL T + I + L L ++ V +H + RL + + Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666 Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN R+H ++ T +A + + LP++ A+ D+ Y+ K A RV Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVIGA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723 Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G Q G ++ ++V + Q + + P+PG + NAL A +A G Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAG 783 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + L V GR + + G + +D + +N Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822 >gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halomonas elongata DSM 2581] Length = 503 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 244/447 (54%), Gaps = 21/447 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F+A+ G DG FI QA+ G A++ A++ SA+ ++ ++ + Sbjct: 37 DSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVL---AHAEPGGSAS--ADARVIHL 91 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + L L+ + P ++ + VTGT+GKSSV ++ + + G + +G Sbjct: 92 EGLAGQLGELGRSLF-EVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLGHG 150 Query: 154 SSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 A ++ RLTTP P+ L AL L+++GV V++EASSH L+Q RL G +L FTNL Sbjct: 151 RPGALREGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFTNL 210 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG- 271 RDH+DYH + AY AK RLF P+ A++ DD ++ +M AG RVL+VG Sbjct: 211 SRDHLDYHGSMAAYAAAKARLFRR--PELRLAVVNGDDPLAR-LMLAGLPAGVRVLAVGD 267 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + V + Q+ I+ + L G F + N L+A +G D Sbjct: 268 DEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLEA 327 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT--ITSGRIIVVFG 389 + +L VPGR + +G ++RG + +DYAHT ++LE L+ +R GR+ +FG Sbjct: 328 LFAAAAELAPVPGRMQVLG-DARGPTVVIDYAHTPDALENALQALRAHLPDQGRLWCLFG 386 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GN 444 CGGDRD GKRP+M A +D+ ++TDDNPRSE IR +I+ G+ + G Sbjct: 387 CGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARVLGG 446 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHET 471 R AIR I ++ +DV+++AGKGHET Sbjct: 447 RAAAIRETIAEVDAEDVILIAGKGHET 473 >gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 487 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR + +FVA+ G + DGH +I +A+ QGA AI+ ++ I + Sbjct: 24 ITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGALAIIC------EELPEQIVNG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +T L+ AS YG N+ + +TGT+GK+++AS + Q+ Q++G ++ Sbjct: 78 ITYVKVADTSSALATIASNFYGNPSANLKLIGITGTNGKTTIASLLYQLFQKAG---YKT 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ TTP + + K L+ +S GV + +E SSHG+ Q R +G++ Sbjct: 135 GLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVSSHGIHQKRTEGLR 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH T Y + K + F+E LPK + A++ DD +++ Sbjct: 195 FEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE-LPKTAFALVNTDDKNGAVMVQN---- 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + V Y K K + N Q + ++ +D + L G F YN L Sbjct: 250 -TKAKKVTYALKSYADYKAQILEN-QLSGLLLKIQDQEVWVKLIGSFNAYNLLAIFATAE 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382 +G+D L+ L +L V GRF++ + I VDYAHT ++L+ +L+ I I + Sbjct: 308 LLGLDQIEALKLLSELESVSGRFQYFISEGNVTAI-VDYAHTPDALKNVLETINDIRTKN 366 Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 +I V G GGDRD KRP MG IA L+ I+T DNPRSE PE I ++ G+ Sbjct: 367 EELITVVGAGGDRDTTKRPKMGHIASALSTKTIITSDNPRSEKPEAIIEQVEAGVEPINY 426 Query: 442 K-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R +AI+TA ++ N D++++AGKGHET + GE+ D I++E L Sbjct: 427 KKILSITDRKQAIKTACQLANPGDIILIAGKGHETYQEIM-GERFDFDDYKIVQETL 482 >gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 487 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF P + +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGLKQESRLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412 Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I PGF+ R +AI I DV+V+AGKGHE Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHE 457 >gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia sp. 4_1_40B] gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli H736] gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli HS] gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 1_1_43] gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 196-1] gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli ETEC H10407] gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520] gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482] gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii B253] gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H736] gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H299] gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Escherichia coli UMNK88] Length = 495 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus B4264] gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus B4264] Length = 491 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466 >gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UTI89] gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli S88] gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli UTI89] gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli APEC O1] gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli S88] gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia sp. 3_2_53FAA] gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IHE3034] gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263] Length = 495 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 250/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|33603177|ref|NP_890737.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella bronchiseptica RB50] gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella bronchiseptica RB50] Length = 945 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + + L V Sbjct: 35 DSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG T+ Sbjct: 90 AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D + LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A L Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260 Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 GY QG +H + + A + Q T+++ + + L G+ + N L+ AG Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSK 320 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376 +G + L + V GR + V ++G + VDYAHT ++L L + Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380 Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440 Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 GIP + +R AI + DV+++AGKGHET + G +K+ D Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 143/341 (41%), Gaps = 34/341 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV A+ + D + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I L+ +Q Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610 Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 D RL T + I + L L ++ V +H + RL + + Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666 Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN R+H ++ T +A + + LP++ A+ D+ Y+ K A RV Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVISA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723 Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G Q G ++ ++V + Q + + P+PG + NAL A +A G Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAG 783 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + L V GR + + G + +D + +N Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822 >gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia mollaretii ATCC 43969] Length = 471 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 238/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S + P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 N + LS A + Y P L + G +G + + Q + Q S +G TS + Sbjct: 64 RNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADD + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G++G ++ +KV N + + L G F V N LVA + Sbjct: 237 MESQVPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ +AI DV+++AGKGHE +V N S + R +LG++ Sbjct: 413 HALAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470 >gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10876] gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 172560W] Length = 491 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 165/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-----ESPA 244 SSH LD R+ G FTNL +DH+DYHQT + Y +AK LF +L E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGEKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH603] Length = 491 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 254/477 (53%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ E +I + +DSR ++ G +F+ + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I+ +DD ++E M+ + V++ G I + + T+ + + Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I ++++ + + +R EAIR+AI + +D++++AGKGHET I+ Sbjct: 410 RSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETYQII 466 >gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Ralstonia sp. 5_7_47FAA] Length = 514 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 172/486 (35%), Positives = 239/486 (49%), Gaps = 34/486 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN DG IPQAI GA A++ + A +R Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ YG PE ++ VTGT+GK+S + ++ Q + G Sbjct: 92 ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + A TTP I L ++L+ L G +++E SSHGL+Q R+DG Sbjct: 148 AVVGTLGTGFVDALAVTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T Y AK RLF P A+I DDA +++ A Sbjct: 207 CFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLQNA-R 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313 A + G G+ V G FD P G F V Sbjct: 264 ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVS 323 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G + G+ + HLEKL V GR E G G + VDYAHT ++LE L Sbjct: 324 NLLAVLGALLTAGVPWPDAIAHLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I Sbjct: 383 RALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442 Query: 431 EI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 EI +H + +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 443 EIADGMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQE 501 Query: 488 IIREIL 493 +R L Sbjct: 502 HVRLAL 507 >gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O26:H11 str. 11368] Length = 495 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AI+ ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894] Length = 471 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 168/453 (37%), Positives = 238/453 (52%), Gaps = 19/453 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + E + + VTGT+GK++ + Q CQR G +S +G Sbjct: 64 SQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + LS L++QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVL 268 RDH+DYH + Y AK LF A+I ADD + + + +A + Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINADDEVGRRWLAKLPDAVAVSMENNI 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G G+++ V + S D + L G F V N L+A G +A+G Sbjct: 242 NPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLALGYP 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A +LE +L V GR E + + VDYAHT ++LE L+ R +G++ VF Sbjct: 302 LAALLESAPRLQPVNGRMEVFSAPGKP-TVVVDYAHTPDALEKALQAARLHCAGKLWCVF 360 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----- 443 GCGGDRD+GKRP+MG IA AD+ +VTDDNPR+EDP+ I A+I + G ++ G Sbjct: 361 GCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADI---LTGMLDAGRARVV 417 Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R EA+ AI + DV+++AGKGHE IV Sbjct: 418 EGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIV 450 >gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HdN1] Length = 974 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 158/457 (34%), Positives = 259/457 (56%), Gaps = 25/457 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + DSR +Q G +FVA+ G+ DG +I A+ +GA A++ + + ++ Sbjct: 25 VSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLADRVGVSAE--QVVNAH 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ D+ R L ASR Y + + ++AVTGT+GK++V+ + ++ R G S+ I Sbjct: 83 GNVIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHLLVRLLMRLGESAKTI 142 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ D+ + TTP I L + L+ G V++EASSHGLDQ RL ++ Sbjct: 143 G---TLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASSHGLDQGRLGCVE 199 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTN+ RDH+DYHQT QAY+ AK +L + ++ ADDA ++ A + Sbjct: 200 ISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLRN--LVLNADDAGVAKMAAVAEH- 256 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320 G +++ + + + V +++ + +++ + KD + F L GEF V N L Sbjct: 257 GVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFNVANILAVLA 316 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIR 377 ++ G ++LV++ L+++ V GR + + ++ G + + +DYAHT ++L+ L +R Sbjct: 317 ALVSEGFSASLVVDALKEIAPVKGRMDCL-PHTSGAQLPAVVIDYAHTPDALQQALNALR 375 Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 T+G++ VFGCGGDRD+GKRP+MGKIA AD +VT DNPRSE P+ I AEI G+ Sbjct: 376 HHCTTGKLWCVFGCGGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVPDVIIAEIRGGM 435 Query: 437 PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +R EAIR AI + +DV+++AGKGHE Sbjct: 436 EATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKGHE 472 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 27/227 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R +++ +F A+VG K D H F+ QA GA VVS + + P Sbjct: 542 VSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDV---------DLPQ 592 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V++TR L +A + ++AVTG+SGK+SV + I G Sbjct: 593 IKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEG--------RVL 644 Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +S +N + P + + L + + + G HV A + GL ++ A T Sbjct: 645 ATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGL-------VRPDAALIT 697 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 N+G H++ ++ AK ++ L+PK A++ DD YS++ + Sbjct: 698 NVGEAHLEGFGSRNNIAKAKSEIYTGLVPK-GVAVVNLDDDYSQDFL 743 >gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter metallireducens GS-15] Length = 511 Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 244/486 (50%), Gaps = 61/486 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR +++G +F A+ G DGH +I + +GA A+VV + + Sbjct: 22 EIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRGAVAVVVED-------PSRVPE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 L VD+ R +S A+ YG + I V T + V+ + R+G+ Sbjct: 75 GMTWLKVDDARLAMSRAAAAFYGNPTDGIPVVGITGTNGKTTTTYLVEAVMARAGIPVAV 134 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TIS D + TTP + L + + L +G V +E SSH L+Q R+DG Sbjct: 135 LG---TISYRFGDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVMEVSSHALEQRRVDGC 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-----PAIIYADDAYSKEVM 257 + G FTNL RDH+DYH+ ++YF +K RLF ELL + A+I DD Y + Sbjct: 192 RFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRAAVINVDDPYGARL- 250 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------G 308 A +A V+S G + + VT SV+G + PL G Sbjct: 251 --ASDAVAPVVSYGLS--------PSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSRLLG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F +YN L A +A+G+ + +E VPGR E V N G + VDYAHT ++ Sbjct: 301 RFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERV-DNDHGITVLVDYAHTGDA 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +LK + I +GRII VFGCGGDRD+GKRP+MG+IA +D++IVT DNPR+ED I Sbjct: 360 LENVLKTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDLSIVTSDNPRTEDAGAI 419 Query: 429 RAEIIHG--------------IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGH 469 EI+ G I GF KG +R EAIR A + DVL++AGKGH Sbjct: 420 IGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAARVARPGDVLLLAGKGH 479 Query: 470 ETVHIV 475 E I+ Sbjct: 480 EDYQII 485 >gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato Max13] gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato K40] gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tomato T1] Length = 487 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 238/468 (50%), Gaps = 25/468 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF P + +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPNLNCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNI 412 Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I PGF+ R +AI I DV+V+AGKGHE Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHE 457 >gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cronobacter turicensis z3032] Length = 501 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 167/461 (36%), Positives = 241/461 (52%), Gaps = 19/461 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D Sbjct: 26 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREI 85 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + + + + VTGT+GK++ + Q CQR G +S Sbjct: 86 HGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGKTTTTQLIAQWCQRLGETSA 145 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + LS L++QG T ++E SSHGL QHR+ +K Sbjct: 146 VMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKF 205 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH + Y AK LF A+I ADD + + + +A Sbjct: 206 AATVFTNLSRDHLDYHGDMEHYEAAKWLLFSA--HHYGQAVINADDEVGRRWLAKLPDAV 263 Query: 265 C----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ G+++ V + S D + L G F V N L+A G Sbjct: 264 AVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALG 323 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A+ A +LE +L V GR E + + VDYAHT ++LE L+ R Sbjct: 324 TLLALDYPLAALLESAPRLQPVNGRMEVFSAPGKP-TVVVDYAHTPDALEKALQAARLHC 382 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 +G++ VFGCGGDRD+GKRP+MG IA AD+ +VTDDNPR+EDP I A+I+ G+ + Sbjct: 383 AGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPRAIIADILTGM---L 439 Query: 441 EKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G R EA+ AI + DV+++AGKGHE IV Sbjct: 440 DAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIV 480 >gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chitinophaga pinensis DSM 2588] gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis DSM 2588] Length = 488 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 254/485 (52%), Gaps = 40/485 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N +S DSR + G F+AI G DGHLFI +AIAQGA I+ ++ ++ + Sbjct: 24 VNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQGAAVIIC------EELPQSLADD 77 Query: 90 TPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V+++ + A Y H ++ VTGT+GK+++A+ + ++ + F Sbjct: 78 LTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNGKTTIATLLFRLFSKL---RFHC 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ + D + TTP I+L L+ + +G +V +E SSH + Q R+ G+K Sbjct: 135 GLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEYVFMEVSSHAVHQQRIAGLK 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261 G F+N+ DH+DYH+T Y K F+ LP + A+ DD +++ RA Sbjct: 195 FAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDG-LPTTAFALTNLDDKRGNVMLQNTRAK 253 Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +V ++GK + +N + ++V K+ F L GEF YN L G Sbjct: 254 KQSYSLKTVADFKGKILE-------NNLTGLIMTVNEKEVH--FRLIGEFNAYNLLAVYG 304 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378 I +G D VL+ L L GRF+++ S RI VDYAHT ++L +L I+ Sbjct: 305 TAILLGQDKDEVLQALSDLSGAEGRFDYI--TSAKDRIIGIVDYAHTPDALLNVLATIKN 362 Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + G ++I V GCGGDRD KRP+M A + +D I+T DNPRSEDP I ++ GI Sbjct: 363 LRKGNEQVITVVGCGGDRDTAKRPVMAAAATEHSDKVILTSDNPRSEDPVAIIQQMEAGI 422 Query: 437 PGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 P ++ +R EAI+TAI + N D++++AGKGHE + G K D ++ E Sbjct: 423 PVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKGHEKYQEI-QGVKHPFDDKKVLLE 481 Query: 492 ILGLI 496 +L L+ Sbjct: 482 MLELM 486 >gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sp. D9] gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E22] gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E110019] gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B171] gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O103:H2 str. 12009] gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli O111:H- str. 11128] gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W] gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli W] gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli EC4100B] gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1180] gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11] gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Shigella sp. D9] Length = 495 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AI+ ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella dysenteriae CDC 74-1112] Length = 495 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + ++ G+++ + V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH1134] gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus F65185] gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 491 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium beijerinckii NCIMB 8052] gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii NCIMB 8052] Length = 489 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/481 (33%), Positives = 255/481 (53%), Gaps = 36/481 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR ++ G +F+ I G DGH +I +AI GA AIV+ + + N + Sbjct: 26 VSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSGALAIVIQEEIKIDN------ENITV 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + V NT+ L+ A+ Y + + N++ VTGT+GK++V +++ I + + IG Sbjct: 80 IKVRNTKLALASIANVFYNEPSKEINLVGVTGTNGKTTVIHYIKDILESYKKRTAIIGTL 139 Query: 151 ----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + Q TTP + L ++G ++ +E +S L + R++ Sbjct: 140 GYEFNKEKASIQKVNPTTPESLELQGLFREFINKGAENIVMEVTSSALAKQRVEYCDFKV 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH++ H T + Y N K++LF+ K +I DD ++E++++A C+ Sbjct: 200 GVFTNLSQDHLEEHGTMENYKNEKIKLFK----KCELGVINLDDGIAEEIIQKA---SCK 252 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVA 318 +L+ G K ++ + + ++ +D D +PG+ VYN L A Sbjct: 253 ILTYGIN-KEADIRATEIRYRNDCIIFKIKFRDIKWRWWCITDVKVNIPGKITVYNVLAA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G CI +G+D ++ L L VPGR E + N+ I VDYAHT ++LE +L R Sbjct: 312 IGACIGLGMDMGDIISCLSNLRHVPGRLEMI-KNNLNKNIIVDYAHTPDALERLLMMARE 370 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435 T G++I VFGCGGDRD+ KR +MG A L+D I+T DNPR+EDP KI +I G Sbjct: 371 TTKGKLITVFGCGGDRDKSKRKVMGMAAGILSDYCIITSDNPRTEDPIKIIEDIEEGMEV 430 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DIIREIL 493 I EK +R +AI +++L D+L++AGKGHE I+ G+ K+ D +I+R+ L Sbjct: 431 INSTYEKIVDRKKAIEKGLKLLKDDDLLIIAGKGHEDYQII--GKDKIYFDDREIVRKAL 488 Query: 494 G 494 G Sbjct: 489 G 489 >gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechocystis sp. PCC 6803] gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803] Length = 505 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 236/464 (50%), Gaps = 15/464 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S++S G +F+ + G + DG F A+ GA A VVS +LQ F ++ Sbjct: 35 VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEK-ALQKFPP--QNG 91 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ V + + A+ Y +HP L VTGT+GK++ + ++ + SS Sbjct: 92 ECVIAVPDLVPVCAGLAAAFY-QHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSAL 150 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T + + TTP L K L+ G + +E SSH L Q R+ Sbjct: 151 LGTLYTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEVSSHALAQGRVLQCGFA 210 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+D+H T + YF AK LF+E + A+I DD Y + ++ R Sbjct: 211 CAVFTNLTQDHLDFHGTMENYFAAKALLFKESY-LQGRAVINQDDPYGQRLIDRLPLDQV 269 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 SV + K + + T +F FL PL G+F + N L A + + Sbjct: 270 YTYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHL 329 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+D A +++ L VPGR E V + + VDYAHT +SLE LK R GR+ Sbjct: 330 GLDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLENALKAARPFIPGRL 389 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-- 442 I +FGCGGDRD+ KRP+MG IA LAD+A+VT DNPR+EDPE+I A+++ GI IE Sbjct: 390 ICIFGCGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGISLDIEPWI 449 Query: 443 -GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G+R AI AI D +++AGKGHE I+ G +K+ D Sbjct: 450 IGDRATAIHKAIREAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 491 >gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863] Length = 495 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV+++AGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 14579] gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST24] gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-Cer4] gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH676] gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis BMB171] Length = 491 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ ++ L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466 >gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 491 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG+ G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia fergusonii ATCC 35469] Length = 495 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 495 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 241/459 (52%), Gaps = 33/459 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ +I +S D+R + G +FVA+ G K DG L+I +A+A+GA A+V + T Sbjct: 19 QDMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEALAKGAAAVVCRRRPQREGVFFT 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143 TP + R+ L+L A +G HP E L + + +F+ + L Sbjct: 79 ----TP-----DPRRALALLAENWFG-HPGREMTLIGVTGTNGKTTTTFLIKEMLEGALK 128 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + Q+G TI + + L TTP + + L ++ G THV +E SSH L QHR+ Sbjct: 129 T-QVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLREMADSGCTHVVMEVSSHALVQHRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +G+ +FTNL +DH+DYH T + Y +AK RLF + A++ DD + +R Sbjct: 188 EGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQC----RRAVLNLDDEAGRWYRER 243 Query: 260 AHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALV 317 C V + L K ++ Q +V + +F P+PG F +YNAL Sbjct: 244 L---ACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQRVFLPIPGGFTIYNALC 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + + +G+ + L V GR E V + + +DYAH+ N+LE IL R Sbjct: 301 ALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPT-AYTVLIDYAHSPNALENILLTAR 359 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 T+GR+I +FGCGGDRD+ KRPIMG + +LAD+A+VT DNPR+EDPE I +I+ G+ Sbjct: 360 DFTAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVTSDNPRTEDPEDIIRDILAGME 419 Query: 438 G-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G +E +R +AI A+ DV+V+AGKGHET Sbjct: 420 GEGAQIHVEP-DRRQAIAWALSQGRPGDVIVLAGKGHET 457 >gi|33593958|ref|NP_881602.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella pertussis Tohama I] gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein [Bordetella pertussis Tohama I] gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS] Length = 945 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 245/475 (51%), Gaps = 41/475 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +FVA G DG F+ QA+A+GA AI+ + + + + L V Sbjct: 35 DSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYET-----EGAPVAPAGAQALPV 89 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ ++ ++A+TGT+GK+S ++ Q+ R G IG T+ Sbjct: 90 AQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIG---TL 146 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D + LTTP + + + L+ + + G V++EASS G++Q RLD I++ Sbjct: 147 GALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAG 206 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T Q Y AK LF+ P A++ ADD + ++ A L Sbjct: 207 FTNLTRDHLDYHGTMQRYEQAKAALFQ--WPDLQAAVVNADDPAGERLLASLPAA----L 260 Query: 269 SVGY--QGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 GY QG +H + + A + Q T+++ + + L G+ + N L+ AG Sbjct: 261 KTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSK 320 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMILKNI 376 +G + L + V GR + V ++G + VDYAHT ++L L + Sbjct: 321 LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTAL 380 Query: 377 RTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + GR++ VFGCGG+RD GKRP MG+IA++ AD +VT DNPRSE P+ I +I+ Sbjct: 381 RPVAQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQIL 440 Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 GIP + +R AI + DV+++AGKGHET + G +K+ D Sbjct: 441 AGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDI--GGRKLPFD 493 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 142/341 (41%), Gaps = 34/341 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+ G DGH ++PQA + GA A VV A+ + D + P Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVV--AHPVADVA------LPQ 561 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ +T L + ++AVTG++GK++ + I L+ +Q Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAI-----LAQWQ------ 610 Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 D RL T + I + L L ++ V +H + RL + + Sbjct: 611 ----GDDGRLATAGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVA 666 Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN R+H ++ T +A + + LP++ A+ D+ Y+ K A RV Sbjct: 667 LVTNAQREHQEFMHTVEAVAHENGAVIGA-LPEDGVAVYPGDEPYAAIWDKLA--GARRV 723 Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G Q G ++ ++V + Q + P+PG + NAL A +A G Sbjct: 724 LRFGLQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAG 783 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + L V GR + + G + +D + +N Sbjct: 784 APLHTCIAALAGFQAVAGRMQHRQMSD--GTVLIDDTYNAN 822 >gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 101-1] gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli B str. REL606] gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Escherichia coli BL21(DE3)] gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489] gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007] Length = 495 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae B728a] gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv. syringae B728a] Length = 487 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 241/479 (50%), Gaps = 26/479 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY + + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M + LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSI 412 Query: 429 RAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I PGF+ R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 413 FDDI---RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467 >gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidans DSM 684] Length = 508 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 162/487 (33%), Positives = 256/487 (52%), Gaps = 52/487 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ ++ DSR ++ G +F A+ G DGH + A+ +GA A+VV L D + Sbjct: 21 EISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVERGAVAVVVEQPVDLPDEIVQV-- 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 VVD++R ++ A+ Y + +L VTGT+GK+++ ++ + +++G + Sbjct: 79 -----VVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKTTMTYLLESVLKQAGYTPAV 133 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TIS+ D+ + TTP + L + L+ SQG + +E SSH L Q R+ G+ Sbjct: 134 VG---TISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALVIEVSSHALMQSRVVGL 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESPAIIYADDAYSKEVMKR 259 FTNL +H+DYH+ ++YF AK RLF+E P+ + A++ DD Y ++++ Sbjct: 191 TFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKE--PQIYGDFTAVVNTDDPYGAKLVRE 248 Query: 260 AHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNA 315 + LSVG ++G + +VC + Q T+ + PL G F + N Sbjct: 249 LNEP----LSVGMHRGADV---RVCDVEQTMQGTVATLETPQGEITVRSPLVGPFNLENL 301 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G + + + + + L + VPGR E V N+ G I VDYAHT ++L L+ Sbjct: 302 LCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPV-DNTLGALIVVDYAHTGDALAKALEA 360 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + + RII VFGCGGDRD KRP MG++A +D++IVT DNPR+E+P KI +I G Sbjct: 361 MAALKPQRIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIVTSDNPRTENPAKIIDDIKVG 420 Query: 436 I----PGFIEKG-------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I P G +R EAI A+ L D+L++AGKGHE ++ G Sbjct: 421 IERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRAGDLLLIAGKGHEDYQVI--G 478 Query: 479 EKKMSVD 485 +K+ D Sbjct: 479 TQKIHFD 485 >gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132] gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio desulfuricans ND132] Length = 507 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 236/473 (49%), Gaps = 34/473 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR IQ G FVA+ G G +IP A+ GA IV A +D A + + Sbjct: 33 VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEA--ARDLVAPVVEKKAV 90 Query: 93 LV-VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V VDN L A + ++ +A+TGT+GK++ + ++ + SGL ++G Sbjct: 91 AVYVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGL---KVGV 147 Query: 150 TSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T++ F D LTTP + + L + V +E SSH LDQ+R+ G+ Sbjct: 148 LGTVNYRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFD 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH---- 261 A FTNL +DH+DYH + YF AK +LF E A++ DD Y + ++ Sbjct: 208 AAVFTNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIG 267 Query: 262 ----NAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +A VG QG+ + + ++ S +GK + PL G F Sbjct: 268 YGIGDASLVRQEVGDKPLVQGRILSM-----TGQGMEIETSWKGKTWVVRSPLVGSFNAL 322 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A + + +G++ + L VPGR E V N + I+VDYAHT ++L+ + Sbjct: 323 NLLAAQAVGLQLGLNCK-DMRRLSTFPGVPGRLERV-MNDKNLDIFVDYAHTPDALDNVQ 380 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + + R+I VFGCGGDRD+ KRP+M A AD+A++T DNPR+EDP I + Sbjct: 381 RTLAALDFKRLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDAR 440 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 G+ G +E +R EAI+ A+ + D L++AGKGHE I+ ++ S Sbjct: 441 PGLAGAKRVMENPDRTEAIKMAVAEMEPGDALLIAGKGHEDYQIIGTTKRHFS 493 >gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio sinaloensis DSM 21326] Length = 493 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 247/476 (51%), Gaps = 18/476 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++++ DSR + G FVA+ G+ DG FI AI +GA A+V + S +++ Sbjct: 27 VSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVAQESSEHPHGSIEVQAG 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +++ LS A RLY ++ VTGT+GK+++ Q I Q GL + Sbjct: 87 IPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTI---TQIIAQWLGLVEKRAAV 143 Query: 150 TSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T + Q TT S I + + L+ L Q + ++E SSHGL Q R+ + Sbjct: 144 LGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSHGLVQGRVKTLPFA 203 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T + Y AK+ LF E K + A+I DD N+ Sbjct: 204 VSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE--HKTAHAVINVDDPVGARWASTLANSVQ 261 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCI 323 L I+ +V +++ +++S G D PL GEF N LVA + Sbjct: 262 VSLKTLDADNAIYASQVD--YSESGISLSFSGMYGDGKLDVPLIGEFNANNVLVALATLL 319 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +GID ++E +L V GR E T S+ ++ VDYAHT ++LE L +R G+ Sbjct: 320 TLGIDKQRLVETASQLTPVIGRMELFQTPSKA-KVVVDYAHTPDALEKALLALRVHCKGK 378 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + V+FGCGGDRD GKRP+M +I LAD I+ DDNPRSEDP +I +++ G+ P Sbjct: 379 LWVIFGCGGDRDVGKRPMMAEIGERLADKVIIADDNPRSEDPARIVEDMLAGMSQPDLAS 438 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + +R A++ A+ QD++++AGKGHE ++ N E D + +++L LI Sbjct: 439 VEHDRFNALQFALSQSQAQDIILLAGKGHEDYQVLAN-ETIHYSDRESAQQLLELI 493 >gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 247/487 (50%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVAIVG+K DG +IPQAIAQG AIV + D + Sbjct: 20 RALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + N + LS A R Y + P L + G +G + + Q + Q S + Sbjct: 80 HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + + LS L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH ++Y AK LF E + II ADD + + Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGE--HRVGQMIINADDEVGLRWLAQ 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G +G+++ ++ N + + L G F V N Sbjct: 253 LPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSNM 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +++G ++ +L V GR E + + VDYAHT ++LE L+ Sbjct: 313 LLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + ++ G R EA+ +AI + DV++VAGKGHE +V N S + Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens SK114] Length = 492 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 172/508 (33%), Positives = 245/508 (48%), Gaps = 39/508 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AIA GA + F+ N P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDD---GKFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AII DD Y E++ R C L+V Y F +C T S +G Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKK-DCPDLAV-YGYGFSEQADICIT----DFTASSDGM 283 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + F P L G F N L A G VLE L K+ GR + + Sbjct: 284 EAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407 NS + VDYAHT ++LE L ++ I S + VFGCGG+RD+GKRP+MG A+ Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQSAALWCVFGCGGNRDRGKRPLMGAAAV 402 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD +VT DNPR E+P+ I +I+ +P ++E +R AIR A+E D++++A Sbjct: 403 QGADKVVVTSDNPRLENPQDIINDILPAVPAPEYVE-ADRAAAIRYAVERAATNDIILIA 461 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKGHE V G K D +I + L Sbjct: 462 GKGHENYQDV-QGVKHHFSDFEIAEKAL 488 >gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] Length = 490 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 15 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 75 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 130 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 190 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 247 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 423 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 424 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 471 >gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia proteamaculans 568] gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans 568] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 246/487 (50%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG FIPQAIAQG A++ + +D + T Sbjct: 20 RALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGVAAVIAEAEGQAEDGAITEM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P L + G +G + + Q + Q L + Sbjct: 80 HGVPVIYLSQLNQRLSALAGRFY-HEPAERLRLVGVTGTNGKTTTTQLLAQWGQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH Y AK LF + AII ADD + + + Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINADDEVGQRWLSQ 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G G+++ V N + S D + L G F V N Sbjct: 253 LPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +++G A ++ +L V GR E + + VDYAHT ++LE L+ Sbjct: 313 LLALATLLSLGYPLAKLVATGNQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA AD +VTDDNPR+E+P+ I A+I+ G Sbjct: 372 ARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTG 431 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + ++ G R EA+ +AI +QDV++VAGKGHE +V N S D + Sbjct: 432 L---LDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTV 487 Query: 490 REILGLI 496 +LG++ Sbjct: 488 ARLLGVV 494 >gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 497 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 177/479 (36%), Positives = 245/479 (51%), Gaps = 56/479 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V DSR + G +FVA+ G DGH F P+A+ +GA A+VV + A IR+ Sbjct: 20 EITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVAAPAHVAVIRT 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 D+TR L A+ + +HP + V G +G + + V+ + +R G Sbjct: 80 -------DSTRAALGRLAAEFW-RHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQG---H 128 Query: 146 QIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +G T T+ + R LTTP L + ++ G T+ +EASS GLD +R+D Sbjct: 129 VVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVMEASSQGLDMNRVDD 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESP---AIIYADDA---YSK 254 ++ G FTNL +DH+DYH T AY AK +LF L P P A++ ADD Y + Sbjct: 189 VEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPASEYYR 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305 V + V + G++ A+ V +S G P Sbjct: 249 SVTE------VPVYTYGFRPD--------AMVRAADVELSPAGTRLRLCTPQGEVPVSLR 294 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYNAL AA +A GI ++ + LE VPGR + V G ++VDYAH+ Sbjct: 295 LVGRFNVYNALAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFG-VFVDYAHS 353 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +SLE +L R T GR+IVVFGCGGDRD KRP+MG+IA LA IVT DNPRSEDP Sbjct: 354 PDSLENVLHTARGFTRGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDP 413 Query: 426 EKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +I +I G+ + G +R EAIR A+ M DV+V+AGKGHET I + Sbjct: 414 VRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKGHETYQIFKD 472 >gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus selenitireducens MLS10] Length = 489 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 167/485 (34%), Positives = 251/485 (51%), Gaps = 45/485 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL++ +S P + + ++ I + DSR + G +F I G DGH + QA +GA Sbjct: 6 ELLDHIS--PCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADRGAV 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 A + + + L+V ++R+ ++ A+R Y +P + ++ VTGT+GK Sbjct: 64 AFLTEEELPV---------DGTQLIVRDSRRAMAQLAARFY-NYPSDRMTMIGVTGTNGK 113 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV F+Q + +R+G + IG T + + TTP L K L+ + G V Sbjct: 114 TSVTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAV 173 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240 ++E SSH L R+ G FTNL +DH+DYHQT Y AK LF +L Sbjct: 174 TMEVSSHALHLGRVHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDA 233 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVT 292 A+I DD+Y+ ++M A + V++ G ++K C + + + T Sbjct: 234 YKRAVINVDDSYA-DIMLGA--SAVPVITYG-------IEKPCDVRAEDLEVSPEGIRFT 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + + + L G F VYNAL A AIGI+ L +L V GRFE V T+ Sbjct: 284 IRLNQQSYPVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERVETD 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT + LE +++ + T + VVFGCGGDRD+ KRP+MGK+A DLAD Sbjct: 344 A-PFHVIVDYAHTPDGLENVIRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADH 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+T DNPRSE+PE I +I+ G+ + +R AI AI + +V+V+AGKGHE Sbjct: 403 VILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKGHE 462 Query: 471 TVHIV 475 T I Sbjct: 463 TYQIT 467 >gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 2362-75] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/484 (35%), Positives = 250/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC 23834] Length = 493 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/470 (34%), Positives = 231/470 (49%), Gaps = 22/470 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G +FVA G DG +IP AIA GA + S F+ L V Sbjct: 30 DSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSG---DGFAWRPEWQIANLGV 86 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + ++ L A++LYG ++ VTGT+GK+S++ ++ Q IG Sbjct: 87 PHLKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGNG 146 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ TTP+P+ + L QG V++E SSHGLDQ+R+ G + FTNL Sbjct: 147 FWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNL 206 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV 270 RDH+DYH + AY +K +LF AII DD + +E+ RA V Sbjct: 207 TRDHLDYHGSMAAYGASKAKLF--YWQSLQHAIINTDDEFGRELAAGLRADRPNLNVYGY 264 Query: 271 GYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G+ + I + + A QV + L G F N GL A G Sbjct: 265 GFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSL 324 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTIT--SGRII 385 VL L ++ GR + + SR GR + VDYAHT ++LE L +R I + Sbjct: 325 PDVLRVLAQIRPATGRMDCI---SRAGRPLVVVDYAHTPDALEKALATLREIKPQGASLW 381 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 VFGCGG+RD+GKRP+MG A+ AD ++T DNPR E+P+ I A+I+ + P +E Sbjct: 382 CVFGCGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEAD 441 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R+ AI+TAI QD++++AGKGHET V GEK D +I L Sbjct: 442 RRV-AIQTAIRRAAPQDIVLIAGKGHETYQDV-QGEKHHFSDFEIAEAAL 489 >gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum 2002] Length = 497 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 247/478 (51%), Gaps = 29/478 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR + G +F+A G DG FIP A+A GA ++ A F+ N Sbjct: 23 LKRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPA---DGFNWNPAWN 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L V R + AS YG+ ++ +TGT+GK+S++ ++ Q + I Sbjct: 80 VPNLAVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALI 139 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TTP P+ + + L+ QG V++E SSHGLDQ R++G+ Sbjct: 140 GTVGNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFAT 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH + + Y +K RLF + AII ADDA+ +E+ + Sbjct: 200 AVFTNLTRDHLDYHGSMEEYGASKARLFHWEGLRH--AIINADDAFGRELAAGIDRQRTQ 257 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAI 325 ++ G + + + + A + Q+T++ + + PL G F N L A LC+ Sbjct: 258 TVTYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVN- 316 Query: 326 GI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI 379 G+ D+A VL ++ GR + +G GG + +DYAHT ++LE L + I Sbjct: 317 GVALKDAAAVLSRIQPAR---GRMQRLG----GGHEPLVVIDYAHTPDALEKALATLAEI 369 Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 R+ VFGCGGDRD+GKRP+MG IA +AD+A+VT DNPRSE+P+ I A+I G+ Sbjct: 370 RPAGNRLYCVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMG 429 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 G +E +R AIR AI D+++VAGKGHE + G K+ D I E L Sbjct: 430 ETGHVE-ADRAAAIRWAIAAARAGDIVLVAGKGHEEYQDI-RGVKQPFSDFRIAEEAL 485 >gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella buccae D17] Length = 483 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 164/480 (34%), Positives = 254/480 (52%), Gaps = 31/480 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR I G +FVA+ G + DGH FI +AI GA+A++ +D Sbjct: 20 EVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLC------EDMPENT 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + V +T + A+ +G + + VTGT+GK++VA+ + + ++ G Sbjct: 74 VEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G ST+ ++ +D + TTP PI L + L + G +V +E SSH + Q R+ Sbjct: 131 HKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+K G FTNL RDH+DYH+T + Y NAK F+ LPK++ AI ADD + VM + Sbjct: 191 GLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LPKDAFAITNADDK-NGMVMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + S F ++ H + + + V+G + F G+F V N L G Sbjct: 249 CKATIKTYSTRTMADF--RARIIECHF-EGMYLEVDGHEVGVQF--IGKFNVSNLLAVYG 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +G VL + L V GR E + ++ G +DYAHT ++LE +L I + Sbjct: 304 AAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAEGVTAIIDYAHTPDALENVLSAIHEVL 362 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + GR+I V G GG+RD+GKRP+M A+ +D I+T DNPR E+P+ I +++ G+ Sbjct: 363 NGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDMLAGLNA 422 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAIRTA M K DV+++AGKGHE + G K D +++REI Sbjct: 423 QQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHEDYQEI-KGVKHHFDDKEVVREIF 481 >gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 247/487 (50%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E+ DSR AG +FVAIVG+K DG +IPQAIAQG AIV + D + Sbjct: 20 RALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + N + LS A R Y + P L + G +G + + Q + Q S + Sbjct: 80 HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + + LS L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH ++Y AK LF E + +I ADD + + Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSE--HRVGQMVINADDEVGLRWLAK 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G +G+++ ++ N V + L G F V N Sbjct: 253 LPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSWGHGEIESRLMGAFNVSNM 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +++G ++ +L V GR E ++ + VDYAHT ++LE L+ Sbjct: 313 LLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + ++ G R EA+ +AI + DV++VAGKGHE +V N S + Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UMN026] gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli UMN026] gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412] gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G + +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLSDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Escherichia coli 042] gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M718] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 488 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 161/469 (34%), Positives = 242/469 (51%), Gaps = 23/469 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ AY ++ + Sbjct: 15 RDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAV----AYEVEGSNVL 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P++ V LS A R YG N++ VTGT+GK+SV V Q G Sbjct: 71 PLTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQR 130 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T Q R TTP PI + L+ L G V++E SSHGLDQ R + Sbjct: 131 CGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAL 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TNL RDH+DYH T +AY AK +LF P + +I DD + +++ Sbjct: 191 AFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFA--WPNLNCRVINLDDDFGRQMAGLKQE 248 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + S +++ ++ + + T ++ +G+ F L G F + N L A G Sbjct: 249 SRLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGA 307 Query: 322 CIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + G+D AL +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R Sbjct: 308 LL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPH 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPR+E +I A+I G Sbjct: 365 AKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFADIRPGFTAA 424 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 FIE R +AI I + DV+V+AGKGHE ++ + S Sbjct: 425 DKVSFIE--GRAQAIAELIAGASADDVVVLAGKGHEDYQEISGQRQPFS 471 >gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 491 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG+ G + +R EAI A+ D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKGHETYQII 466 >gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TW10509] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV+++AGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium sp. 21] Length = 487 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 256/491 (52%), Gaps = 59/491 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V DSR + G +FVA+ G DGH+FI +A+A GA+ +V QD S I Sbjct: 24 VHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAKIVVCEQLP--QDLSGHI--- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V+N L L A+ Y +P ++ VTGT+GK++VA+ + ++ G F+ Sbjct: 79 -TYIQVENAGFALGLIAANFY-DNPSAKLKLVGVTGTNGKTTVATLLYKLFVELG---FR 133 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ + + + TTP PI L + L + + G + +E SSH + QHR+ G+ Sbjct: 134 VGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFMEVSSHAVAQHRITGL 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----------DA 251 + G FTNL DH+D+H+T AY AK F ++LPK + A++ D DA Sbjct: 194 SFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFF-DMLPKSAFALVNIDDKNGSVMLQNTDA 252 Query: 252 YSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 Y K +K + R++ + G + + + ++V I L G F Sbjct: 253 YKKTYGLKNIADFKGRIVESHFNGMLMQI-------DTREVWIR-----------LVGAF 294 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSL 369 YN L + I + D+ VL L +L GRF+ V N G VDYAHT +++ Sbjct: 295 NAYNLLAVYSVAILLEQDTTRVLTILSRLTGAEGRFDTLVSGNGVIG--IVDYAHTPDAV 352 Query: 370 EMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 E +L+ I + + II V GCGGDRD+ KRP M +A +L+D I+T DNPRSEDP++ Sbjct: 353 ENVLRTIVDLRKNKEQIIAVLGCGGDRDKTKRPEMAAVAANLSDKVILTSDNPRSEDPQQ 412 Query: 428 IRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I E+ GIP ++ +R EAI+ A+ + D++++AGKGHE V GEK+ Sbjct: 413 IIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKGHEKYQEVM-GEKRP 471 Query: 483 SVDCDIIREIL 493 D I++++ Sbjct: 472 FDDKAILKDLF 482 >gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 165/470 (35%), Positives = 246/470 (52%), Gaps = 30/470 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G +F+AI G++ DG FI QA+AQGA AIV TI Sbjct: 22 LTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPPLTI--- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + + + LS A Y + P N ++ +TGT+GKS+ A V L + Sbjct: 79 -PCIGIRDLPARLSELAGYFY-EQPANKLDLVGITGTNGKSTTALLV---ANWRTLLGGK 133 Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G TI + F + + TT S + + L+ L QG V++E SSHGL QHR+ + Sbjct: 134 AGVMGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAAL 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL RDH+DYH T +AY AK L + L E A+I ADD ++ + A Sbjct: 194 PFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVDEPCAVINADDQLGRQWL--AAY 249 Query: 263 AGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 G SV + G+ + + + I+ + PL G F V N L Sbjct: 250 PGAVAFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLA 309 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + +G D ++L +L V GR E F G N+ VDYAHT ++LE L+ + Sbjct: 310 AMGAMLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAP--LAVVDYAHTPDALEKALQAL 367 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R G++ + GCGGDRD+GKRP+M +A AD I+TDDNPR+E+P +I A+++ G+ Sbjct: 368 RVHCEGQLWCLVGCGGDRDRGKRPMMAAMAEQHADRVILTDDNPRTEEPAQIMADMVAGL 427 Query: 437 --PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 P ++ + +R++AI A+ +KQD+++VAGKGHE I+ ++ S Sbjct: 428 RDPAAVQVEHDRVKAIALALGQASKQDIILVAGKGHEDYQIIGTDKRHYS 477 >gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae Sd197] gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197] gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1617] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALTTLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli IAI1] gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 55989] gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E24377A] gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE11] gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli 55989] gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli IAI1] gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088] gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120] gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167] gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA271] gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli H591] Length = 495 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1357] Length = 490 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 15 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 75 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 130 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 190 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 247 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 423 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 424 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 483 Query: 490 REILGLI 496 R +LG+I Sbjct: 484 R-LLGVI 489 >gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus Ellin428] Length = 1084 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 169/458 (36%), Positives = 239/458 (52%), Gaps = 29/458 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I ++ DSR ++ G +F A+ G K DG FI AIA GAEAIV +A T Sbjct: 613 DRDITHLTYDSRRVKPGTLFFALKGEKVDGTAFIDAAIAAGAEAIVTENA--------TF 664 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 R+ +VV N R ++ FA+ Y ++P L VTGT+GK++ A ++ IC+ + L Sbjct: 665 RTRATNIVVANARNTMADFAAAFY-QNPARALKIAGVTGTNGKTTTAFLIKHICEAAQLR 723 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G I TTP + + + L + S G ++E SSH L Q R+ + Sbjct: 724 CGLLGTVRYEIGDRVLPASRTTPESLDVHEMLWQMRSAGCKACAMEVSSHALVQARVRDV 783 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP---KESPAIIYADDAYSKEVMKR 259 + A FTNL +DH+DYH+T +AYF AK R+F EL K+ AII DD Y +++ R Sbjct: 784 EFDAAIFTNLTQDHLDYHKTMEAYFEAKARMFSELAAQKKKQGKAIINLDDRYGAQLVTR 843 Query: 260 AHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A +G F H + G+ + PL G+F VYN+L A Sbjct: 844 FGKAIPITTYGLGVHADFRASNVRIDFHGTS-YQLDAGGRSYLVRLPLIGQFNVYNSLAA 902 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A+GI+ + L VPGR E V R R++VDYAHT ++L ++K R Sbjct: 903 VAAANAMGIEVRNCVLALANATAVPGRLEAVPAQ-RQFRVFVDYAHTDDALLNVIKTCRE 961 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + R+IVVFGCGG+RD+ KRP MG + AD AIVT DNPR E+P II I Sbjct: 962 LNPARLIVVFGCGGNRDKTKRPRMGAVVDQHADHAIVTSDNPRKEEP----LAIIEDIKP 1017 Query: 439 FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +GN R EAI A+ M +D++++AGKGHE Sbjct: 1018 GMRRGNYEVIVDRREAIFKAVAMAQPRDIILIAGKGHE 1055 >gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli B7A] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 5 str. 8401] gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 301] gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2a str. 2457T] gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301] gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Shigella flexneri 2002017] gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 2747-71] gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri VA-6] gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-304] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 166/468 (35%), Positives = 243/468 (51%), Gaps = 29/468 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 505 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 249/487 (51%), Gaps = 18/487 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ P L N+ P + ++N ++ DSR + AG +F A+ G+ DG FI Sbjct: 8 MKLEMLLS---PWLTNK--ALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFI 62 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI GA AI+ + QD ++ T I+ + + + LS A R YG+ + + Sbjct: 63 DTAIQAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALY 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT+GK++++ + Q G + +G T + + + TT S I + + L+ L Sbjct: 123 AVTGTNGKTTISQLLAQWANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGL 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++E SSHGL Q R+ + A FTNL RDH+DYH Q Y +AK LF E Sbjct: 183 VEQGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE- 241 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISV 295 II ADDA E + +A + LK + Q VTI+ Sbjct: 242 -HDAGVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAF 300 Query: 296 EGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + F PL G F V N L+A +A A +L +L V GR E V ++ Sbjct: 301 DSSWGQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRME-VFQDT 359 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L+ +R G++ +FGCGGDRD GKRP+M ++A LAD Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQI 419 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I+TDDNPRSEDP+ I A+++ G+ +R A R A + QD+++VAGKGHE Sbjct: 420 ILTDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKGHE 479 Query: 471 TVHIVTN 477 I+ + Sbjct: 480 DYQILAD 486 >gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium HTCC5015] Length = 514 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/475 (34%), Positives = 247/475 (52%), Gaps = 42/475 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--- 83 +R I V +DSR + AG +F+A+ G + +G F QAI QGA A++ S S+++ S Sbjct: 27 DRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGAVAVL--SEQSIEEPSLLE 84 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSG 141 + +L + + + +S ++R G H I VTGT GK+SVA F+ Q Sbjct: 85 SASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDGKTSVAHFLAQ-----A 139 Query: 142 LSSFQIGPTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 L++ P + + + N + TTP + L + S QG+ HV++E SSHGL Sbjct: 140 LTALNP-PVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRHVAMEVSSHGL 198 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-- 252 DQ R++G+ TNLGRDH+DYH++ Y +AK +LF + K S ++ DD + Sbjct: 199 DQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKAS--VLNCDDDFGC 256 Query: 253 --SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQ------QVTISVEGKDFDFL 303 + E+ +R V G+ G + HN Q + +S G+ + Sbjct: 257 MLALELEER-----LPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSGGQRYTVD 311 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F N L +A+G+ +E + +L VPGR E + + G VDYA Sbjct: 312 VALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLPN-GAVAVVDYA 370 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +LE L ++R + GR+ VFGCGGDRD+GKRP+MG+ A +D +TDDNPRSE Sbjct: 371 HTPQALEQTLSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAAERFSDALWLTDDNPRSE 430 Query: 424 DPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PE I +I G+ P + +R AI+ A+E DV+++AGKGHE+ +V Sbjct: 431 KPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGKGHESEQVV 485 >gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens] gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens] Length = 606 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 165/508 (32%), Positives = 259/508 (50%), Gaps = 48/508 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+N+ + P+ + +I + DSR + G +FV + G K DGH F QAI +GA Sbjct: 99 KLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIEKGAV 158 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126 AI+ SL + S T ++V++T LS A +YG HP +++ +TGT+GK Sbjct: 159 AII-----SLMEVSLT-EGLKAAVIVEDTSVILSALAGVIYG-HPSKKLSVVGITGTNGK 211 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL----TTPSPIYLAKALSYLSSQG 181 ++ + +Q + + GL Q+G TI + N+L TTP + L ++ + G Sbjct: 212 TTTSYLLQSLYEAMGL---QVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNG 268 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240 +E SSHGL R + I+ FTNL RDH+D+H+T++ Y AK LF +++ P+ Sbjct: 269 TEVCIMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPE 328 Query: 241 ESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ DD S V + + +G + ++ V + +V + D Sbjct: 329 RQRKVVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGD 388 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G VYN L A + IA+G ++ +E + VPGR E + + + Sbjct: 389 VEISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELI-DEGQTFAVL 447 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT +++ +L +R RII V GCGGDRD+GKRPIM KIA D +D+ I+T DN Sbjct: 448 VDYAHTPDAVARLLDTVRECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCIITSDN 507 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLN 457 PR+E P I +++ G+ +E+ G+R+ +AIR A+ M Sbjct: 508 PRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAAVAMAE 567 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + D +V+AGKGHET I+ GE K D Sbjct: 568 EGDAVVIAGKGHETYQII--GEIKGHFD 593 >gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 491 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466 >gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii CDC 3083-94] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ + V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 1012] gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella boydii ATCC 9905] Length = 495 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ATCC 8739] gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC 8739] gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 53638] Length = 495 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. 3_1_5R] Length = 479 Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 243/465 (52%), Gaps = 37/465 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR I G IFVA+ G DGH FI AI +GA+ I+VS Q Sbjct: 24 MEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLIIVSKEVPCQ-------KGIGY 76 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145 +++ N RK L + AS YG +NI L VTGT+GK++ ++Q+ R G + Sbjct: 77 VLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 136 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG + TTP + L + + QG+ ++ +E SSH L+ R++ ++ Sbjct: 137 KIGKEVIEAPN------TTPESLDLVRMIKKAYDQGLEYIIMEVSSHALELGRVNMLEFD 190 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+DYH+T + YF AK +LF +L K + ++ DD Y + + + H Sbjct: 191 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-AIKVLNVDDEYGRRLQEEFHGISY 249 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 QGK + + K++V +S+ GK + + G F +YN L + L + Sbjct: 250 GTKQAEVQGKILGFE-----GGKEKVELSLFGKKKECKIQILGGFNLYNLLGSIALVKEL 304 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + +E L PGRFE V + + +DYAHT ++LE IL+ I+ I + +II Sbjct: 305 GMSEEEIFAKVELLQGAPGRFETVDC-GQDYMVVIDYAHTGDALENILQAIQEIKTKKII 363 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444 +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I E+ GF ++ + Sbjct: 364 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KGGFTKENHI 420 Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R EAI I K D++++AGKGHET I+ G KK D Sbjct: 421 CVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQIL--GRKKYHFD 463 >gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 487 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 243/478 (50%), Gaps = 26/478 (5%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +F R+ I E++ DSR+++ G +F+A+ G DG I A+ +GA A+ Sbjct: 4 NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFV 133 AY ++ ++ P++ V LS A R YG +++ VTGT+GK+SV V Sbjct: 60 AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GLDQ R + TNL RDH+DYH T +AY AK +LF L K +I DD + Sbjct: 180 GLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCR--VINLDDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQ 311 +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFN 296 Query: 312 VYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++L Sbjct: 297 LSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDAL 353 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 354 EKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIF 413 Query: 430 AEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I PGF+ R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 414 DDI---RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 467 >gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1272] gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1273] Length = 491 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 252/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +F+ + G D H F QA AQGA AIV Sbjct: 6 LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I+ +DD ++E M+ + V++ G I + + T+ + + Sbjct: 237 ILNSDDPVAEEYMR---STAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A + A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I ++++G G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHETYQII 466 >gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BGSC 6E1] Length = 491 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G I K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 495 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 247/487 (50%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVAIVG+K DG +IPQAIAQG AIV + D + Sbjct: 20 RALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAEGEAADGTVREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + N + LS A R Y + P L + G +G + + Q + Q S + Sbjct: 80 HGVPVVYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----AL 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + + LS L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH ++Y AK LF + + II ADD + + Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFAD--HRVGQMIINADDEVGLRWLAK 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G +G+++ ++ N + + L G F V N Sbjct: 253 LPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSNM 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +++G ++ +L V GR E + + VDYAHT ++LE L+ Sbjct: 313 LLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G Sbjct: 372 ARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSG 431 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + ++ G R EA+ +AI + DV++VAGKGHE +V N S + Sbjct: 432 L---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia rohdei ATCC 43380] Length = 471 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 237/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S P++ + Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 N + LS A + Y P L++ G +G + + Q + Q S +G TS + Sbjct: 64 RNLNQHLSTLAGQFY-HQPGAALSLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADDA + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFSTHQAEHK--IINADDAVGRRWLSQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G+QG ++ ++V N + + L G F V N LVA + Sbjct: 237 MEGNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G +L L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 ALGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKR +MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412 Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N S + R +LG++ Sbjct: 413 RAQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470 >gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosospira multiformis ATCC 25196] Length = 524 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 166/496 (33%), Positives = 242/496 (48%), Gaps = 42/496 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G F+A G K DG FIP AI +GA A+V + F+ Sbjct: 31 RMEHLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVV----WERDGFAWDPEW 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 TP L V + + A LY HP ++ VTGT+GK+S + ++ Q + Sbjct: 87 KTPNLPVPDLKSEAGFIADYLY-DHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAA 145 Query: 146 QIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + F + TTP + L ++ +G V++E SSHG+ Q R++G Sbjct: 146 VIGTLG--AGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGA 203 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TNL RDH+DYH T + Y AK RLF K A++ DD + +++ Sbjct: 204 TFAVAMLTNLSRDHLDYHGTMEVYAAAKARLFHWRGLKY--AVLNLDDVFGMQLLHDLEG 261 Query: 263 AGCRVLSVGYQ---------GKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G ++ G+ G F + + + A + I EG+ F + G F Sbjct: 262 TGTGMIGYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFN 321 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N L +A GI + L+K+ V GR + +G I VDYAHT ++LE Sbjct: 322 ASNLLGVLATLLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEK 381 Query: 372 ILKNIRTIT------------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +L +R SGR++ VFGCGG+RDQGKRP+MG++A LAD AI+T DN Sbjct: 382 VLTTLREAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLADEAIITSDN 441 Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 PRSEDP+ I I G IEK +R AI AI +K DV+++AGKGHET Sbjct: 442 PRSEDPDSIIRGIAVGAAANHRIEK-DRAAAIHRAIRGTHKGDVVLIAGKGHETWQ-EAG 499 Query: 478 GEKKMSVDCDIIREIL 493 G+K D ++ R+ L Sbjct: 500 GKKFPFSDAEVARKAL 515 >gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 491 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 230/467 (49%), Gaps = 41/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I++++ DSR ++ G +F+ I G DGH F +A GA AI+ T+ Sbjct: 22 EIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELGAVAIIAEK---------TVDV 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V ++++ +++ A YG + ++ +TGT+GK++V+ V+QI + +G + Sbjct: 73 TVPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRENGEQTGL 132 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTP + L + + GV+ +E SSH L Q R+ G Sbjct: 133 IGTMYRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVMEVSSHALVQGRVYGSDYD 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 F NL +DH+DYH T + Y AK LF +L A+I DDA S M+ A Sbjct: 193 VAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKVAVINIDDAESSR-MQTA 251 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 A + Q F + I+ G FD P + G F Sbjct: 252 TAAHVITFGIKKQADF----------RASNIKIASHGSTFDLRTPVGNFTLKIKMIGNFS 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN L A A+ I + +E + V GRFE V + + VDY+HT +SL Sbjct: 302 VYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSA-GQDFPVIVDYSHTPDSLLN 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ I R+ V+ GCGGDRD+GKRP M KIA+D A I T DNPRSE+P I + Sbjct: 361 VLQTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIED 420 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I G+P ++ NR +AIR A+ DV+++AGKGHE I+ Sbjct: 421 MIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKGHEDYQII 467 >gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum reducens MI-1] gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desulfotomaculum reducens MI-1] Length = 486 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 169/470 (35%), Positives = 242/470 (51%), Gaps = 28/470 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I + DSR G IFVA+ G + DGH +I A+A G A+V + L + Sbjct: 20 EIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVTAVVYETEIVLPTGVTGV 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++RK L+L A + YG HP L++ G +G + + I + + Sbjct: 80 Q-------VSDSRKALALMADQFYG-HPSKKLSMVGVTGTNGKTTTTHLIAAIWRKARVK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G TI + + L TTP + L K L+ + +GV V++E SSH L +R+ G+ Sbjct: 132 PGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVAMEVSSHALALNRVAGV 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTN+ +DH+D+H T + Y AK +LF + AII ADD ++E+ K + Sbjct: 192 NYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFTTDI---QYAIINADDPAAEELKKISRG 248 Query: 263 AGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +V + G Q I K + S + L G F VYNAL A Sbjct: 249 ---KVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLKLTGRFNVYNALAAYTT 305 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A+G S V+ LE + V GRFE + + + VDYAHT + LE IL R IT Sbjct: 306 GMALGFGSDTVVSALEDVPGVAGRFELL-DKGQNFAVVVDYAHTPDGLENILTTARQITK 364 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR+I VFGCGGDRD+ KRPIMG+IA +D+ +VT DNPR+E+P+KI +++ G+ I Sbjct: 365 GRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTSDNPRTEEPQKIIQDVVEGVNRVIA 424 Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R EAI AIE+ + DV+V+AGKGHE I+ G K S D Sbjct: 425 PEDYLVLVDRREAINKAIELAQEGDVVVIAGKGHEDYQII--GTTKYSFD 472 >gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB102] Length = 491 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 247/476 (51%), Gaps = 29/476 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++ DDA + E M R+ A +G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYM-RSTAATVVTYGIGTTSDVM-AKDIVMTSGGTTFTLVTPYESVNVTM 294 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y VD Sbjct: 295 KLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNPR Sbjct: 351 YAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 SEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 411 SEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K-12 substr. W3110] gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli] gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. MG1655] gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Escherichia coli str. K12 substr. W3110] gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli BW2952] gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1] gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli DH1] Length = 495 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anoxybacillus flavithermus WK1] gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Anoxybacillus flavithermus WK1] Length = 488 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 46/493 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ L L + S P+ I + DSR ++ G +FV I G DGH F Sbjct: 1 MKLQTL-------LQHLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 QA+A+GA A+V +L P++ V+++R+ L++ A YG+ H +++ Sbjct: 54 EQAVARGAVAVVAEKPLALP---------VPVIYVNDSRRALAVLADAFYGQPTHQLHLI 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ +++IC+ +G + IG + I D + TTP + L + Sbjct: 105 GVTGTNGKTTTTHLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKM 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V V++E SSH L R+ G FTNL +DH+DYH+T + Y +K LF +L Sbjct: 165 VDAHVDIVAMEVSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQL 224 Query: 238 ---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + P AI+ ADDA S+E K + V++ G H + A +Q+ Sbjct: 225 GNRFDHQRPKFAILNADDAASEEYKK---STAATVVTYGIH----HKSDIMA----KQIE 273 Query: 293 ISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 I+ G F + P L G F VYN L A C+ I + ++E + + VP Sbjct: 274 ITTSGTTFQLITPIETVQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVP 333 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GRFE V + + VDYAHT +SLE +L+ IR R+ VV GCGGDRD+ KRP+M Sbjct: 334 GRFEVVDA-GQPFTVIVDYAHTPDSLENVLQTIRQFAKKRVFVVVGCGGDRDRTKRPLMA 392 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462 +IA+ +D+ I T DNPRSEDP I ++ G+ + +R EAI AIE K D++ Sbjct: 393 QIAVKYSDVPIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDII 452 Query: 463 VVAGKGHETVHIV 475 ++AGKGHET I+ Sbjct: 453 LIAGKGHETYQII 465 >gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli WV_060327] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 AALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli ED1a] gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Escherichia coli ED1a] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNEPLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii Sb227] gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227] gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shigella flexneri CDC 796-83] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 171/487 (35%), Positives = 251/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ + V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTVPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium gilvum PYR-GCK] gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. Spyr1] Length = 512 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 242/453 (53%), Gaps = 18/453 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ +H QAG +F A+ G+K G + A+ +GA A V++ A + + +A Sbjct: 34 QVTGVTLRGQHAQAGDLFAALPGSKAHGARYAADAVERGAVA-VLTDADGVSEIAAHGGP 92 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 PILV R L A+ ++G+ E+ ++ VTGTSGK++ V+ + +G + Sbjct: 93 AVPILVHPAPRSVLGEVAAAVFGRPSEHLRVIGVTGTSGKTTTTYLVEAGLRSAGRVAGL 152 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I AQ LTTP L L+ + QGV V +E SSH L R+DG+ Sbjct: 153 IGTVGVRIDGRAQPGGLTTPEAPDLQALLAAMLEQGVDTVVMEVSSHALTLGRVDGVSFA 212 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264 G FTNL RDH+D+H T Q YF AK RL + P + ++I DD + + + RA +A Sbjct: 213 VGGFTNLSRDHLDFHPTMQDYFEAKARLVDPTSPTHAARSVICVDDEWGRAMAARA-DAP 271 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLC 322 V G ++ ++V A+ Q ++V+ G LPG + V N L+A L Sbjct: 272 VTVSVTGDADWWV--QEVRALDGGVQDFLAVDPAGVHHALEIGLPGGYNVANCLLAVALL 329 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTIT 380 A+ + L VPGR E V RG VDYAH +L +L+ +R Sbjct: 330 DAVDVSPEQAAPGLRDA-TVPGRLEAV---DRGQPFLALVDYAHKPGALAAVLQTLREQC 385 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439 +GR+ VVFG GGDRDQGKR MG++A +LAD+ +VTDDNPR EDP IRA I+ G G Sbjct: 386 AGRLAVVFGAGGDRDQGKREPMGRVAAELADLVVVTDDNPRGEDPAVIRAAILRGASGAQ 445 Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R AI A++ + D++++AGKGHE Sbjct: 446 TVEIGDRRAAIVHAVQWAREGDIVLIAGKGHEA 478 >gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum thermopropionicum SI] Length = 496 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 251/472 (53%), Gaps = 49/472 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR ++ ++FVAI G + DGH +I +A+ +GA A+V+ L Sbjct: 23 VEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGALAVVMERRVELP-------PG 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +V + R+ L+L ++R YG +P ++ VTGT+GK++ S + I +G + Sbjct: 76 VAWALVPDARRALALLSARFYG-NPSFKMKLIGVTGTNGKTTTTSLIADILAGAGC---R 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+++ D L TTP L + L + + V +E SSH L HR+DG Sbjct: 132 VGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACVMEVSSHALALHRVDGS 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257 + FTNL +DH+D+H+ + Y +K++LF+ L + A+I ADD ++ + + Sbjct: 192 EFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREAGIAVINADDPHAGQFI 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPG 308 + AG V + G K A + ++I G F + G Sbjct: 252 R---AAGGTVYTYGI--------KNAADVRAESISIGARGACFGVAGKWGRLRLDLRITG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F VYNAL A A+G+ + + E LEK PGRFE V + + VDYAHT + Sbjct: 301 LFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDSGQDFA-VVVDYAHTPDG 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE ILK R IT GR+I VFGCGGDRD+ KRP+MG IA +D AI+T DNPR+EDP KI Sbjct: 360 LENILKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDFAIITSDNPRTEDPLKI 419 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EI G+ ++ + +R +AIR A+EM + DV+V+AGKGHE I+ Sbjct: 420 IKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGKGHEDYQII 471 >gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 550 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%) Query: 13 ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +LIN L + P + + ++ D+R +Q G +F+A+VG DGH + QAI +GA+ Sbjct: 62 QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 121 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 IV S + N P++ V+NT + +++ A YG + + + VTGT+GK+ Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +V ++QI + ++ IG T+ +D +L TTP I + L+ + GV Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L K S Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289 Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD +E + VL+ G K A+ N Q V I G Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338 Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +FD L G+F VYN L A A GI +++ LEK+ V GRF+ Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +++ G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I T DNPR+EDP I +++ G+P +R AI AIE DV+++AG Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517 Query: 467 KGHETVHIV 475 KGHE I+ Sbjct: 518 KGHEDYQII 526 >gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae 642] Length = 487 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 242/479 (50%), Gaps = 26/479 (5%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DD Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVINLDDD 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAAIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLAAVGALL--GLDYALDEILKALPKLEGPVGRMQRLGGAEKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASI 412 Query: 429 RAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I PGF+ R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 413 FDDI---RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKGHEDYQEI-NGQRQ 467 >gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum JDM1] Length = 493 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%) Query: 13 ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +LIN L + P + + ++ D+R +Q G +F+A+VG DGH + QAI +GA+ Sbjct: 5 QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 IV S + N P++ V+NT + +++ A YG + + + VTGT+GK+ Sbjct: 65 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +V ++QI + ++ IG T+ +D +L TTP I + L+ + GV Sbjct: 116 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L K S Sbjct: 173 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 232 Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD +E + VL+ G K A+ N Q V I G Sbjct: 233 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 281 Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +FD L G+F VYN L A A GI +++ LEK+ V GRF+ Sbjct: 282 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 341 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +++ G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ Sbjct: 342 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 400 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I T DNPR+EDP I +++ G+P +R AI AIE DV+++AG Sbjct: 401 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 460 Query: 467 KGHETVHIV 475 KGHE I+ Sbjct: 461 KGHEDYQII 469 >gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 536] gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Escherichia coli 536] gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli F11] gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82] gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli NC101] gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O83:H1 str. NRG 857C] gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA206] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 170/484 (35%), Positives = 249/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dechloromonas aromatica RCB] Length = 492 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 250/477 (52%), Gaps = 42/477 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL++QL+ +Q + V+ DSR +Q G +F+A G+ DG +I A+A+GA A++ Sbjct: 6 ELLDQLAAMGIQ-----PSGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALARGAVAVL 60 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV 129 + S +N P+ + R A +YG HP +++A+TGT+GK+++ Sbjct: 61 WQPSADFSWDSTLATANLPVAAL---RPLAGPLAHAVYG-HPSEGLSLIAITGTNGKTTI 116 Query: 130 ASFVQQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + Q + +G P S I + TTP L + L+ ++ + Sbjct: 117 SQCIAQAYPKPCAIIGTLGAGFPDSLI-----ETGFTTPEATTLMRYLADFRARNAAACA 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASS G+++ R++G ++ FTN RDH+DYH T +AY AK +LF P+ AII Sbjct: 172 LEASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFH--WPRLRTAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD + +M+ RVL GY G+ + A+ + + + G+ F+ + P Sbjct: 230 NLDDEFGLNLMR--ETTAMRVL--GYAIGE--ARRDFPALVRAENLVDTPFGQRFNLVLP 283 Query: 306 ---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 L G + + N L A + G+ +A V L +L PGR E +G N Sbjct: 284 NGRVAVDTTLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEP- 342 Query: 357 RIYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + VDYAHT ++LE L+++ T +GR+ VVFGCGGDRD+GKRP MG +A LAD Sbjct: 343 LVVVDYAHTPDALENALTALRDVATTRAGRLSVVFGCGGDRDKGKRPQMGALAERLADRV 402 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT+DNPRSE P I EI G+ + +R AIR A+ QDV+++AGKGHE Sbjct: 403 LVTNDNPRSEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKGHE 459 >gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 493 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%) Query: 13 ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +LIN L + P + + ++ D+R +Q G +F+A+VG DGH + QAI +GA+ Sbjct: 5 QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAK 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 IV S + N P++ V+NT + +++ A YG + + + VTGT+GK+ Sbjct: 65 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +V ++QI + ++ IG T+ +D +L TTP I + L+ + GV Sbjct: 116 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L K S Sbjct: 173 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 232 Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD +E + VL+ G K A+ N Q V I G Sbjct: 233 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 281 Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +FD L G+F VYN L A A GI +++ LEK+ V GRF+ Sbjct: 282 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 341 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +++ G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ Sbjct: 342 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 400 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I T DNPR+EDP I +++ G+P +R AI AIE DV+++AG Sbjct: 401 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 460 Query: 467 KGHETVHIV 475 KGHE I+ Sbjct: 461 KGHEDYQII 469 >gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Escherichia coli O127:H6 str. E2348/69] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 166/465 (35%), Positives = 242/465 (52%), Gaps = 23/465 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G+ + R EA+ A+ + DV++VAGKGHE IV N Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185] gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185] Length = 495 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 166/468 (35%), Positives = 242/468 (51%), Gaps = 29/468 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychroflexus torquis ATCC 700755] Length = 487 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 254/478 (53%), Gaps = 33/478 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR I A +FVAI G DGH FI A+A GA +V ++ + + Sbjct: 24 IKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGANVVVC------EELPSEVIPE 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V + R+ L++ AS Y N+ + VTGT+GK++V S + Q+ + G +++ Sbjct: 78 VSYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTSLLYQMFKTLG---YKV 134 Query: 148 GPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ D +LTTP + + L ++ GV +E SSHG+ QHR G+ Sbjct: 135 GLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVSSHGIAQHRTLGLN 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL +DH+DYH+T Y + K R F++ L K+ A+ DD +++ Sbjct: 195 FEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQ-LSKKGFALTNVDDKNGNYMLQNT--- 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + + GY K + KV + + +++ G + F G+F YN L + Sbjct: 251 --KAKTFGYGVKNLTDYKVKILEKSFSGLKLNINGTEVWSRF--IGDFNAYNLLAVYAVA 306 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--T 380 + + L++L +L V GR++ +S G + VDYAHT ++L+ +L+ I Sbjct: 307 DLLEVKDIENLQNLSQLKPVEGRYQH-HMSSTGIHVIVDYAHTPDALQNVLQTTNDIRSR 365 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF 439 S +I V GCGGDRD KRP+MGKIA +L+ I+T DNPR+EDP+ I +I G+ P Sbjct: 366 SEELITVVGCGGDRDTTKRPLMGKIAGNLSTKVILTSDNPRTEDPDSIIKDIEKGVEPQD 425 Query: 440 IEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + K +R +AI+TA + ++D++++AGKGHET + NG + D I++E+L Sbjct: 426 VSKTLSITSRQQAIKTACILAQQRDIILIAGKGHETYQEI-NGIRSDFDDLKIVKELL 482 >gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 550 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%) Query: 13 ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +LIN L + P + + ++ D+R +Q G +F+A+VG DGH + QAI +GA+ Sbjct: 62 QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAK 121 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 IV S + N P++ V+NT + +++ A YG + + + VTGT+GK+ Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +V ++QI + ++ IG T+ +D +L TTP I + L+ + GV Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L K S Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289 Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD +E + VL+ G K A+ N Q V I G Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338 Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +FD L G+F VYN L A A GI +++ LEK+ V GRF+ Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +++ G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I T DNPR+EDP I +++ G+P +R AI AIE DV+++AG Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517 Query: 467 KGHETVHIV 475 KGHE I+ Sbjct: 518 KGHEDYQII 526 >gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moorella thermoacetica ATCC 39073] Length = 499 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 179/490 (36%), Positives = 259/490 (52%), Gaps = 47/490 (9%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ L I ++ + + DSR IQ+G++FVAI G K DGHL+I A+ +GA A+ Sbjct: 5 ELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGAVAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128 V++ +L A +R VD+TR L A+R Y +P ++ VTGT+GK++ Sbjct: 65 VLAQERTLPPGVAWVR-------VDDTRLALGQLAARFY-DYPSRKLRLIGVTGTNGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 +Q I + G + +G TI + D L TTP + L L + S Sbjct: 117 TTHLIQAILEAGGRPAGLVG---TIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARA 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KES 242 V +E SSH L HR+ G + FTNL +DH+D+H + YFN K RLF+ L K Sbjct: 174 VVMEVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAG 233 Query: 243 P--AIIYADDAYSKE--------VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 P A+I DD Y V+ GC+V + + IHL+ Sbjct: 234 PKYAVINGDDPYGSRLAALTPVPVVTYGCTPGCQV-----RARDIHLET-----GGSTSL 283 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 ++ G + L G + +YNAL A + + GID + + L + VPGR E V Sbjct: 284 VTWPGGEAAMELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERV-DQ 342 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT + LE +L+ R +T GR++VVFGCGGDRD+GKRP+MG+ A L+D Sbjct: 343 GQPFTVVVDYAHTPDGLENVLRAARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDY 402 Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 +I+T DNPRSEDPE I A+I+ G +PG + +R AI A+ + D++V+AGK Sbjct: 403 SIITSDNPRSEDPEAIIADILPGVREVPGASYQVLVDRRRAIAAALALARPGDMVVIAGK 462 Query: 468 GHETVHIVTN 477 GHET IV + Sbjct: 463 GHETYQIVKD 472 >gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium NOR51-B] Length = 484 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 162/473 (34%), Positives = 244/473 (51%), Gaps = 28/473 (5%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L K ELI+ P + I++++ DSR + G +FVA+ G + DG FI Sbjct: 3 LAVKSLAELID----VPAELGSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFID---- 54 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123 +A+ +A L + + + ++ V R A R +G ++AVTGT Sbjct: 55 ---DALRAGAAAVLAEADGLAQQHPKVIAVPALRSRCGDIARRGFGDVSARMALVAVTGT 111 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 +GK+S+A Q+ + G+ + IG T+T+++ A + TTP L + L+ + Sbjct: 112 NGKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVN---TTPDVFTLHRTLAAWHA 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + HV +EASSH L Q RL G+ L G FTNL RDH+DYH+ ++AY AK+RLF + P Sbjct: 169 EDIDHVVLEASSHALSQERLAGLTLRTGIFTNLSRDHLDYHEDERAYLAAKLRLFSDY-P 227 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGK 298 + AI ADD + EV A C L + + + + + +T+ Sbjct: 228 LQY-AIYNADDPMASEVRTVAS---CPTLGISMSSAEADVFAQFEVLQSGLNITLHAPYG 283 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G F +N + A +G D V+ L L VPGR + V + + Sbjct: 284 TASAETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGRMQRVASPQELA-V 342 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT +L + ++ +R +G + +VFGCGGDRD+GKR MG+IA LAD +VT D Sbjct: 343 VVDYAHTPEALAVAIEALRPGCTGELWLVFGCGGDRDRGKRAQMGRIAATLADRVVVTSD 402 Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSE PE+I +I+ GI G + +R AI A+ DV+++AGKGHE Sbjct: 403 NPRSEAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKGHE 455 >gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 EDL933] gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. EDL933] Length = 495 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + +N+ V T + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVGVTG-TNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L Q T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G +R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Haliscomenobacter hydrossis DSM 1100] Length = 490 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 165/485 (34%), Positives = 242/485 (49%), Gaps = 50/485 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 INEV DSR +FVA+ G + DGH FIPQ + G A+VV TI N Sbjct: 29 INEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGISALVVE----------TIPEN 78 Query: 90 TP----ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P I+ V N+ + L AS Y +HP + ++ VTGT+GK++ + + + SGL Sbjct: 79 VPDQVTIVQVANSAQALGFLASAFY-EHPSHQLTLVGVTGTNGKTTTVTLLYDLF--SGL 135 Query: 143 SSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ G ST+ +NR+ TTP + + L+ + G + +E SSH Sbjct: 136 G-YKCGLLSTV-----ENRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEVSSHA 189 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 +DQ R+ G+ FTN+ DH+DYH T Y AK F++L K + A++ DD Sbjct: 190 VDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQL-SKRAFALVNIDDKRG 248 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 VM + A S+ +F + I N + ++ + DF L GEF Y Sbjct: 249 M-VMTQNTAASVNRYSLRQMAEF----RARIIENSL-TGLHLDIDNQDFYGRLIGEFNAY 302 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L + + D L L +L GRF++V R VDYAHT ++LE +L Sbjct: 303 NLLAVYATAVLLEQDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDYAHTPDALEKVL 362 Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + I+ + +++ V GCGGDRD+ KRP M K+A +D I+T DNPRSE+PE I E Sbjct: 363 ETIQALRKADAKVLTVVGCGGDRDRTKRPTMAKVACQYSDQVILTSDNPRSEEPEAIIRE 422 Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 + G+P + +R EAIRTA + DV++VAGKGHE + G K D Sbjct: 423 MEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKGHEKYQEI-KGVKHPFDDK 481 Query: 487 DIIRE 491 +I++E Sbjct: 482 EILKE 486 >gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1550] gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock1-15] Length = 491 Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH L+ R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALNLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ ++ L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHETYQII 466 >gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis str. Al Hakam] Length = 491 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. Sakai] gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4024] gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. FRIK966] gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4196] gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4113] gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4076] gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4401] gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4486] gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4501] gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC869] gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC508] gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4206] gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4045] gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4042] gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. EC4115] gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. TW14588] gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate ligase [Escherichia coli O157:H7 str. TW14359] gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. EC1212] gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. G5101] gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. 493-89] gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H- str. H 2687] gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1125] gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli O157:H7 str. 1044] Length = 495 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L Q T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G +R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus 03BB108] Length = 491 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 493 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 241/469 (51%), Gaps = 37/469 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I V DSR I+ G++FV I G K DGH ++ A+ GA A++V + + Sbjct: 21 DKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAIALLVEKPVAGTQGVTVV 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 R V +TRK L + AS YG P L + G +G + + I + +Q Sbjct: 81 R-------VKDTRKALPIVASNFYGA-PSRQLRLIGVTGTNGKTTTTHLITSVLEEAGYQ 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+ + + + TTP + L + + + +G + +E SSH LD R+D + Sbjct: 133 VGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVMEVSSHALDLGRVDCL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL +DH+DYH+T Y AK++LF L K+ + D S V + A Sbjct: 193 DFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAVINRDDPSWTVFRDATP 252 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVY 313 + RV++ G + A +V + EG F +P L G F V Sbjct: 253 S--RVVTYGITDE--------AAVRATEVRVEPEGSCFTLKWPEGDLRLSLNLSGWFNVS 302 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA + GI ++ LEK+ +PGRFE V + + VDYAHT + LE IL Sbjct: 303 NALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCG-QDFTVIVDYAHTPDGLENIL 361 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K R I RII VFGCGGDRD+GKRP+MGKIA + +D +I+T DNPRSEDP I +I+ Sbjct: 362 KTARAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDPLAIIEDIV 421 Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ + +R AI AI M +D++++AGKGHET ++ + Sbjct: 422 TGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKGHETYQLLKD 470 >gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Lactobacillus plantarum WCFS1] gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus plantarum WCFS1] Length = 550 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 248/489 (50%), Gaps = 50/489 (10%) Query: 13 ELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +LIN L + P + + ++ D+R +Q G +F+A+VG DGH + QAI +GA+ Sbjct: 62 QLINSLKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAK 121 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 IV S + N P++ V+NT + +++ A YG + + + VTGT+GK+ Sbjct: 122 IIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKT 172 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 +V ++QI + ++ IG T+ +D +L TTP I + L+ + GV Sbjct: 173 TVTHLIEQIYRDQQQATGLIG---TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVE 229 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SS L R+ GI FTNL +DH+D+H+T Y AK LF +L K S Sbjct: 230 TVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSA 289 Query: 244 ------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD +E + VL+ G K A+ N Q V I G Sbjct: 290 DGTNKVAVLNTDDPVGREFEQYT---AAHVLTFGL--------KPDAMINAQNVEIKSHG 338 Query: 298 KDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +FD L G+F VYN L A A GI +++ LEK+ V GRF+ Sbjct: 339 TEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQS 398 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V +++ G + VDY+HT + L L+ I+ + I V GCGGDRD+ KRP M KIA++ Sbjct: 399 VPSHT-GVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVE 457 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + I T DNPR+EDP I +++ G+P +R AI AIE DV+++AG Sbjct: 458 HSTKPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAG 517 Query: 467 KGHETVHIV 475 KGHE I+ Sbjct: 518 KGHEDYQII 526 >gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli] gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli O55:H7 str. CB9615] gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli O55:H7 str. USDA 5905] Length = 495 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L Q T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA280] Length = 495 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 491 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 487 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 238/467 (50%), Gaps = 23/467 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASI 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I G FIE R +AI I + DV+V+AGKGHE Sbjct: 413 FDDIRPGFTAVDKVRFIE--GRGQAIAELIASASADDVVVLAGKGHE 457 >gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cellulophaga lytica DSM 7489] Length = 487 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 154/480 (32%), Positives = 253/480 (52%), Gaps = 37/480 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N + DSR + +FVA+ G DGH +I A+ GA AI+ + + + Sbjct: 24 VNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNAGANAIICET------MPVNLVNG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V N L++ AS YG +N+ + VTGT+GK++++S + Q+ +++G +++ Sbjct: 78 ITYVQVKNGNAALAIMASNFYGTPSKNLKLVGVTGTNGKTTISSLLYQLFKKAG---YKV 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G STI D + TTP I + K+L+ +++ GV +E SSHG+ Q R++G+ Sbjct: 135 GLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFCFMEVSSHGIHQKRIEGLV 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL DH+DYH+T Y + K LF+ LPK + A+ DD + VM + A Sbjct: 195 FEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDG-LPKTAWALTNIDDK-NGAVMLQNTKA 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + ++ F + + N+ Q + I D + L G+F YN L Sbjct: 253 KKQTYALKTYADF----RAQILENQFSGQLLKID----DNELWSKLIGDFNAYNMLAIYA 304 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +G++ +L L +L V GRF++ + I VDYAHT ++L+ +L I + Sbjct: 305 TAQLLGLEKMEILRLLSELENVDGRFQYYISGKNITAI-VDYAHTPDALKNVLNTINALR 363 Query: 381 SGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +G +I V GCGGDRD+ KRP+MG IA +++ + T DNPR+E P +I E+ G+ Sbjct: 364 TGNEDVITVVGCGGDRDKSKRPVMGHIASEMSTKVVFTSDNPRTESPSEILKEVEAGVEA 423 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + NR +AI+TA ++ +D++++AGKGHET TNG + D I++++L Sbjct: 424 QNTRKVLTIENREQAIKTACQLAQPKDIILIAGKGHETYQ-ETNGVRIDFDDYKIVKQLL 482 >gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 491 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli TA143] Length = 495 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|51246753|ref|YP_066637.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Desulfotalea psychrophila LSv54] gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein [Desulfotalea psychrophila LSv54] Length = 1014 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 156/497 (31%), Positives = 254/497 (51%), Gaps = 55/497 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +V++DSR + +G +F+A G +DGH ++ A+ +G ++V + Q+ A + Sbjct: 40 VADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYA----H 95 Query: 90 TPILVV---DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 P LV+ D+ + + A+ Y +P +++ +TGT+GK++++ ++ + R G Sbjct: 96 CPALVIEVADSQAAYGKILAN--YFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLG-- 151 Query: 144 SFQIGPTSTISS--FAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 Q+G T+++ + D LTTP + + L ++ GV V +E SSH + Sbjct: 152 -HQVGVIGTVNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVIMEVSSHAI 210 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYS 253 Q R+ ++ FTNL RDH+DYH + YF+AK+ LF L ++ A+I +D Sbjct: 211 SQARIGALRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQ 270 Query: 254 KEVMKRAHN--AG-CRVLSVGYQ-GKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLP 307 E ++R H AG R LS G + G + L +V V ++ + +F L Sbjct: 271 TEFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLV 330 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYA 363 G F + N L C A+ I + E++ +L PGR E V ++VDYA Sbjct: 331 GRFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVDYA 390 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L+ +L + + G +I VFGCGGDRD+GKRP+MG +A LAD+ IV DDNPR+E Sbjct: 391 HTPDALDKLLSTLGDVPHGDLIAVFGCGGDRDKGKRPLMGAVAARLADVVIVADDNPRTE 450 Query: 424 DPEKIRAEIIHGIP--------------------GFIEKGNRIEAIRTAIEMLNKQDVLV 463 E I AEI+ G+ G + G+R AI A+ M +D++ Sbjct: 451 ASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVGDRRRAIDLAVHMACSKDIIA 510 Query: 464 VAGKGHETVHIVTNGEK 480 +AGKGHE + G+K Sbjct: 511 IAGKGHEPYQLGATGKK 527 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + EV++DSR + G IFVA+ G DGH ++ Q +A GA +VV A D + Sbjct: 565 LGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAAGAACLVVEKARP--DLTC----- 617 Query: 90 TPILVVDNTRKFLSLFASR---LYGKHPENILAVTGTSGKSSVASFVQQI 136 +LV D R + A+R G ++ +TG+SGK+++ I Sbjct: 618 PQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGKTTIKEMTASI 667 >gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Ames] gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Sterne] gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0488] gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0193] gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0442] gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0389] gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0465] gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0174] gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis Tsiankovskii-I] gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. A0248] Length = 491 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus G9842] Length = 491 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + QGV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDNVTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++ G G + +R EAI AI + D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 466 >gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus W] gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus 95/8201] gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 491 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 491 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL1A] gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. NATL1A] Length = 509 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 158/468 (33%), Positives = 243/468 (51%), Gaps = 23/468 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR I+ G +F+ + G K DG F +AI +GA A ++S SL + Sbjct: 24 EIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGACAAIISKKASL--LNPPTNE 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +++ + F+ A+ +GK I + +TGT+GK++ + ++ + G S Sbjct: 82 DPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTSFLIEFLTTSLGHPSAL 141 Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + ++ + ++ TT + L L GV + ++E SSH L Q+R+ G Sbjct: 142 FGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFN 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH + ++YF AK LF L+ + P ++I DD + ++ + N Sbjct: 202 GAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRSVINIDDKWG-SILAKELNK 260 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALV 317 C S+ + I K I N Q + GK +F+ PL GEF + N L Sbjct: 261 KCWTCSLKENSQ-IREKPDLYISNLQIMQDGYMGKLHTPFGVGNFISPLIGEFNLMNMLQ 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRGGR--IYVDYAHTSNSLEMI 372 A G+ + G+ +LE L K VPGR + + G + G + VDYAHT + L+ Sbjct: 320 AIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVKDGYPLVIVDYAHTPDGLQNA 379 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L R++T R+I VFGCGGDRD+GKR MG++A AD +VT DNPR EDP +I +I Sbjct: 380 LIASRSLTKKRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI 439 Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 GI E + R AI+ AI K DV+++AGKGHE I+ + Sbjct: 440 QKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLIAGKGHEDYQILKD 487 >gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Paraprevotella xylaniphila YIT 11841] Length = 485 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 164/483 (33%), Positives = 255/483 (52%), Gaps = 35/483 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I ++ DSR +Q G +FVA+ G + DGH +I +AI +GA A+V + +Q T Sbjct: 23 RNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEKGAVAVVCEAWPEVQAEGVTY- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V ++ + ++ YG + + VTGT+GK+++A+ + + + G + Sbjct: 82 -----VQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTTIATLLYNMFRVFG---Y 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ D + TTP PI L + L ++ +G + +E SSH + QHR+ G Sbjct: 134 KCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFMEVSSHAVAQHRIAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K G FTNL RDH+DYH+T + Y +AK F+ LPK + A+ DD + +M + Sbjct: 194 LKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDG-LPKGAFAVTNVDD-RNGMIMVQNT 251 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319 A S+ F K + + + + V GK+ P G F V N A+ AA Sbjct: 252 KAVVNTYSLRAVADF---KAKVLEESFEGMCLDVNGKEVS--VPFIGRFNVSNLLAVYAA 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +C+ G + LV L L V GRFE + + G VDYAHT ++L +L + I Sbjct: 307 AVCMGRGAEDVLVA--LSTLRPVNGRFETI-RSREGVTAIVDYAHTPDALVNVLSTVNEI 363 Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 G +I V G GG+RD+GKRPIM + A+ +D I+T DNPR E+P++I +++ G+ Sbjct: 364 LKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVIITSDNPRFEEPQEIINDMLAGLD 423 Query: 438 -----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +R EAIRTA M DV++VAGKGHE V G K D ++I+ + Sbjct: 424 KEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHEDYQEV-KGVKHHFDDHEVIKGV 482 Query: 493 LGL 495 G+ Sbjct: 483 FGI 485 >gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia frederiksenii ATCC 33641] Length = 471 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 238/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG A+V + D S P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 N + LS A + Y P L + G +G + + Q + Q +G TS + Sbjct: 64 RNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWGQ----ALGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADD + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G++G ++ +V N ++ F L G F V N LVA + Sbjct: 237 MENNVPAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L +L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAQLLAAAPQLLPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ +AI + DV+V+AGKGHE +V N S + R +LG++ Sbjct: 413 HAQAIHGRAEAVTSAIMQAKEDDVVVIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470 >gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 491 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTVEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP I +++HG G + +R EAI AI D++++AGKGHET I+ Sbjct: 410 RSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETYQII 466 >gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum DSM 5427] Length = 483 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 243/487 (49%), Gaps = 44/487 (9%) Query: 10 DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 + +L+ L+ ++ E ++++ + DSR +F+AI G K DGH FI AIA GA Sbjct: 2 ELSKLLTGLNYVCVKGNEHQEVDHMIYDSRIKTNAGLFIAIEGFKTDGHQFIEAAIANGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 +AI+V I+ + I+ V++TR ++L A+ YG HP ++ VTGT+G Sbjct: 62 KAILVQK-------DVEIKEDVTIIKVEDTRLAMALVANNAYG-HPSKQFELVGVTGTNG 113 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSY 176 K+S+ + QI + +IG TI +NR+ TTP + L Sbjct: 114 KTSITFLLGQILEAY---HKKIGIIGTI-----ENRIGSQILKAERTTPESLDLQALFKK 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + V +E SSH L R+ G G FTNL +DH+D+HQT + Y AK +LF Sbjct: 166 MVESQVDTTLMEVSSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFTM 225 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TIS 294 I+ D Y E++K A C +++ K K I V T+ Sbjct: 226 C----ETGIVNKDSDYINEIIK---GATCNLVTYAID-KDADYKATNVIITAAGVEYTLV 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + F P+PG+F VYN L A+ I +L L+ VPGR + + + Sbjct: 278 CDQGTFKVDVPIPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFKS-IK 336 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G + VDYAHT + LE +L I+ G II VFGCGGDRD+ KRPIMGKIA +D Sbjct: 337 GYSVLVDYAHTPDGLENVLSTIKEFAQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVF 396 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKGHE 470 +T DNPR+EDP I E+ G+ + ++E + AIEM +DV+++AGKGHE Sbjct: 397 ITSDNPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKGHE 456 Query: 471 TVHIVTN 477 I+ + Sbjct: 457 NYQILKD 463 >gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. K90mix] Length = 505 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 243/463 (52%), Gaps = 19/463 (4%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + +++ +++ DSR + G +FVA+ G + G A QGA AI+ A + Sbjct: 24 LPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILWDEAEAAP 83 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 S P+L + R L L+G P + ++AVTGT GK+SV+ + Sbjct: 84 ALS------IPVLHLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFAGALE 137 Query: 139 RSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G+ + +G T A +D TTP I L + L++L++ G +S+EASSHGL+Q Sbjct: 138 QLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHGLEQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ G+ + T LG DH+D+H +QQAY +AK RLF P A++ ADDA + ++ Sbjct: 198 RMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARLFA--WPGLETAVLNADDALGQRLI 255 Query: 258 KRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + +L+ G L ++V A + + T+ V G+ + L G FQV N Sbjct: 256 R--ETTAEHILTYSAVGASADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVGNL 313 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A+G ++ + +L VPGR E S G + VDYAHT +L L Sbjct: 314 LATLAALRALGHSWPAAVDAVSRLRGVPGRMERFELPS-GALLVVDYAHTEQALAAALDA 372 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R T+GR+I VFGCGGDRD KRP MG+ A AD IVTDDNPRSEDP IRA ++ G Sbjct: 373 LRPHTAGRLIAVFGCGGDRDVTKRPAMGRAASARADQVIVTDDNPRSEDPAAIRAAVLAG 432 Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R A+R A+ DV+++AGKGHET V Sbjct: 433 CDRPEACRELGDREAAVRAAVAEAGPGDVILLAGKGHETTQQV 475 >gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Escherichia coli SE15] gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Escherichia coli AA86] gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia coli M605] Length = 495 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia intermedia ATCC 29909] Length = 471 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 236/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVAIVG++ DG +IPQAIAQG A++ + D S P++ + Sbjct: 4 DSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 N + LS A + Y P L + G +G + + Q + Q S +G TS + Sbjct: 64 RNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----ALGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADD + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLGQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G+ G ++ V N + + L G F V N LVA + Sbjct: 237 MEGQVPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAQLLATAPNLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ +AI ++DV++VAGKGHE +V N S + R +LG++ Sbjct: 413 HALAIHGRAEAVTSAIMQAKEEDVVLVAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVM 470 >gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis CO92] gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate ligase [Yersinia pestis CO92] gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis CA88-4125] Length = 490 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 14 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 74 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 128 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 129 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 189 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 246 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 247 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 306 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 307 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 365 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 366 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 425 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 426 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 471 >gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella copri DSM 18205] Length = 487 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 167/510 (32%), Positives = 262/510 (51%), Gaps = 41/510 (8%) Query: 1 MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKLQ+L+ P ++I + ++ V+ DSR I+ G +FVA+ G + DGH F Sbjct: 1 MKLQELLKNIEPVQIIGDADV--------EVTGVNIDSRKIKEGHLFVAMKGTQVDGHKF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 IP+A+ GA++++ +D + V +T + A+ YG + Sbjct: 53 IPKALELGAKSVLC------EDMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+++A+ + + ++ G + G ST+ ++ +D + TTP PI L Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFG---HKCGLLSTVCNYIEDEAIPADHTTPDPIELNML 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + G + +E SSH + Q R+ G++ G FTNL RDH+DYH+T + Y NAK Sbjct: 164 LGKMVEAGCEYAFMECSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAF 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ L K + AI ADD + +M + A + S F C + + Sbjct: 224 FDG-LSKTAFAITNADDK-NGMIMVQNTKATVKTYSTRSMADFRARILECHFGG---MYL 278 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++G++ F G+F V N L G I +G VL + LH V GR E + + Sbjct: 279 EIDGREVGVQF--IGKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPI-QSP 335 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLA 410 G VDYAHT ++LE +L I + G+ +I V G GG+RD+GKRP+M + A+ + Sbjct: 336 EGYTAIVDYAHTPDALENVLNAIHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQS 395 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR E+P+ I +++ G+ I +R EAIRTA + K DV++VA Sbjct: 396 DKVIITSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVA 455 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495 GKGHE + G K D ++IR+I G+ Sbjct: 456 GKGHEDYQEI-KGVKHHFDDKEVIRDIFGI 484 >gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 6P18H1] Length = 488 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 152/450 (33%), Positives = 229/450 (50%), Gaps = 14/450 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG +FVAI G++ DG+ FI AI GA A+V + S + + N P++ Sbjct: 25 DSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSETELSSEHLTVAFIGNVPVVKY 84 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + LS A Y +N+ + VTGT+GK++++ + Q + G S +G Sbjct: 85 HQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRSAVMGTIGN- 143 Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 Q + + TT S + + +LS G S+E SSHGL QHR++ + A FTN Sbjct: 144 GLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSSHGLAQHRVEALHFKAAIFTN 203 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYHQ+ + Y AK RLF EL +I ADD + + +A ++ Sbjct: 204 LTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVINADDEIGHQWLTELPDAIAVSMNAD 261 Query: 272 YQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 ++ K IH +T + PL G F V N L+ ++ G Sbjct: 262 FKVGLHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYP 321 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +L + L V GR E + ++ + VDYAHT ++LE L R G + +F Sbjct: 322 LENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIF 380 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NR 445 GCGGDRD+GKRP+M ++A A+ IVT DNPR+E +I A+I+ G + G +R Sbjct: 381 GCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDR 440 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +AI+ AIE + DV+++AGKGHE I+ Sbjct: 441 AQAIQFAIESAVENDVILIAGKGHEHYQII 470 >gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM 10] gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10] gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Nepal516] gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Antiqua] gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Pestoides F] gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis Angola] gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Nepal516] gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Yersinia pestis Pestoides A] gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis D106004] gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis KIM D27] gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis Z176003] gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 19 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 79 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476 >gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Haemophilus influenzae NT127] Length = 488 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Carnobacterium sp. AT7] Length = 492 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/492 (34%), Positives = 250/492 (50%), Gaps = 39/492 (7%) Query: 13 ELINQLSI--FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 ELI L F + E +I +V+ D+R ++ G +FV I+G+ +DGH +A+ +GA Sbjct: 5 ELIKPLKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGAT 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 +V S I P++ V++T K +++ A+ Y HP ++ VTGT+GK Sbjct: 65 LVVASEP---------IEVAVPVIYVNDTMKAMAILAATFY-HHPSQDLRVIGVTGTNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++V + I + IG I S + + TTP I L K L + GV Sbjct: 115 TTVTHLLDYIFHDHKEKTGVIGTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATC 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPK 240 S+E SSH L Q R+ G FTNL +DH++YH T + Y AK LF +L K Sbjct: 175 SMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGK 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKD 299 AI+ DD + ++ RV S G +I N+ + ++ E + Sbjct: 235 PKFAILNFDDPVGRSFEEKT---AARVFSYGIDQPADFKATDLSITNRGTRFNLNFENRV 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 ++ L G+F V NAL A A G+D V++ +EK+ V GRFE V + I Sbjct: 292 YEVQLQLVGKFNVSNALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVKGDHDFAVI- 350 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT + L +L + I +G + V GCGGDRD+ KRPIM +IA +D I T DN Sbjct: 351 VDYAHTPDGLLNVLNAVNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDTVIFTSDN 410 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR+EDP I E++ G +E+G +R EAI+ AIE N D++++AGKGHE Sbjct: 411 PRTEDPIAILHEVVDG----LEEGTYQLIPDRREAIQAAIEQANTNDIVLIAGKGHEDYQ 466 Query: 474 IVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 467 II--GTEKIHFD 476 >gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 488 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M +IA A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQIAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis YPIII] gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis YPIII] Length = 495 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 19 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 79 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAMEVSSHGLIQDR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476 >gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20] Length = 528 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 162/463 (34%), Positives = 237/463 (51%), Gaps = 38/463 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DS AG +FV + G G F QA+A GA A V++ A Q T TP+ Sbjct: 50 VSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVA-VLTDADGAQIVHETA-PGTPV 107 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142 LV D+ R + ++ +Y HP L AVTGT+GK++ A F+ I C +G Sbjct: 108 LVHDDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++G S S R T +P+ L + ++ V S+EASSH + HRLDG+ Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDKVGAASLEASSHAIVLHRLDGL 220 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL RDH+D+H+T + Y AK +LF + ++ DD + + A Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRG--VVCVDDQWGAALAAEAPI 278 Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316 RV + Y G ++ V + T+ +G+ + PLPG V NA Sbjct: 279 EIDRVRA--YPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAA 336 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375 +A + I G+ +A L H +PGR + + + R G VD+AHT ++E+ LK Sbjct: 337 LALVMAIRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKA 396 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP+ IR I+ G Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEG 456 Query: 436 IPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470 + G +E A+R +E+ D ++V GKGHE Sbjct: 457 VRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499 >gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Croceibacter atlanticus HTCC2559] Length = 486 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 243/477 (50%), Gaps = 32/477 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + +FVA G DGH +I A+ QGA AIV ++ + Sbjct: 24 ITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQGAIAIVC------EELPKDTVNG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V N ++ L+ AS Y EN+ + VTGT+GK+++AS + Q+ ++G F++ Sbjct: 78 VTYVKVQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTTIASLLYQLYTKAG---FKV 134 Query: 148 GPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G ST+ + TTP + + K LS ++ G + +E SSHG+ QHR G+K Sbjct: 135 GLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFMEVSSHGIAQHRTTGLK 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL DH+DYH T Y + K + F+E LP + A+ ADD K M N Sbjct: 195 FTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDE-LPSSAFALTNADD---KNGMVMLQNT 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + Y K I K + N Q + ++ + + L G F YN L Sbjct: 251 KAKKQT--YALKSIADYKAQILEN-QFSGLLLKLNNNELWSKLIGNFNAYNLLAIFATTE 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382 +G+ + L + +L V GRF+++ N VDYAHT ++L+ +L+ I I + Sbjct: 308 LLGMQTMESLRLISELESVNGRFQYLIKNKITA--IVDYAHTPDALKNVLETINAIRTKN 365 Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI 440 +I V GCGGDRD KRP MG IA L+ I T DNPR+EDP KI I G+ P Sbjct: 366 EELITVVGCGGDRDATKRPKMGHIASVLSTKVIFTSDNPRTEDPNKIIEAIESGVEPQHF 425 Query: 441 EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +K +R +AI+TA + D++++AGKGHET + NGE+ D I++ +L Sbjct: 426 KKTLSIADRKQAIKTACSFAKENDIILIAGKGHETYQEI-NGERTDFDDFKIVKTLL 481 >gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis PB1/+] gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 31758] gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia pseudotuberculosis PB1/+] Length = 495 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 19 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 79 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 252 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 430 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 431 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 476 >gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate ligase [Haemophilus influenzae F3047] Length = 488 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 242/476 (50%), Gaps = 24/476 (5%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I ADD + + +A ++ ++ G +K + ++ + I+ E + + Sbjct: 236 INADDEIGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVL 295 Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G F V N L+ ++ G +L + L V GR E + ++ + VDY Sbjct: 296 HSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDY 354 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ IVT DNPR+ Sbjct: 355 AHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRT 414 Query: 423 EDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E +I +I+ G + G +R +AI+ AIE + DV+++AGKGHE I+ Sbjct: 415 ESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQII 470 >gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pestis FV-1] Length = 478 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 2 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 61 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 62 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 116 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 117 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 177 VAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 234 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 235 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 295 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 353 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 354 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 413 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 414 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 459 >gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU 86-1044] Length = 489 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 170/514 (33%), Positives = 265/514 (51%), Gaps = 48/514 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ LI KD P + S +E +I + + S+ + G +F+A G DG +I Sbjct: 1 MKLKRLI-KDLPNAEIKGS------KEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 +A+ GA A++ S I N + VV+ K +S F Y + E +L Sbjct: 54 AEAVETGAAAVLNDIFDPSLKVSQIIHPN--VAVVEG--KLVSAF----YHRPGEELLMV 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++V+ ++ + + IG I A TTP K L + Sbjct: 106 GVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREM 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +Q +E +SH L Q R+ I G FTNL +DH+DYH+T AY K +LF L Sbjct: 166 VNQRSQAAVMEVTSHALHQGRVSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL 225 Query: 238 LP-----KESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGY--------QGKFIHLKKV 282 P K P A++ DD + ++++ GCRV + Y + + I L Sbjct: 226 DPEAKKRKNYPKAAVVNIDDPWFEKIID-----GCRVPIITYGIANHADLRAEEIQLGAE 280 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 ++ T+ +GK + PL G F V N+L G I++G+ VL+ ++ V Sbjct: 281 GIVY-----TLVHQGKRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPV 335 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGR E+V N RG +++VD+AHT ++L+ +L ++ +T G++IVVFGCGGDRD KR M Sbjct: 336 PGRLEYV-PNKRGLKLFVDFAHTPDALKNVLNCLKELTQGKLIVVFGCGGDRDPYKRSQM 394 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQ 459 G+IA + +D+AI+T DNPRSE+P I +I+ G FI+ +R +AI AI + Sbjct: 395 GRIAEEFSDLAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPE 454 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 DV+++AG+GHE I + + D +++ +IL Sbjct: 455 DVVLIAGRGHEPYQIFAHQTIEFK-DREVVEDIL 487 >gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia coli] Length = 495 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR + V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRMK-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 487 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/467 (35%), Positives = 237/467 (50%), Gaps = 23/467 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT ++ Sbjct: 296 NLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ +R GR++ +FGCGGDRD+GKR +M ++ LAD VTDDNPRSE P I Sbjct: 353 LEKVLEALRPHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAII 412 Query: 429 RAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I G FIE R +AI I N DV+V+AGKGHE Sbjct: 413 FDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 457 >gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus sp. Y412MC61] gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC61] gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y412MC52] Length = 489 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 174/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%) Query: 13 ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+ LS P W N + DSR + G +F + G DGH F +A+A+GA Sbjct: 2 KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126 AIV S+ + P+++V ++R+ +++ A YG+ H +++ VTGT+GK Sbjct: 62 AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 ++ S ++QI +++G + IG S+ N TTP + L + + +GV Sbjct: 113 TTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240 V++E SSH L Q R+ G FTNL +DH+DYH T + Y NAK LF +L + Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230 Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P A++ DD S+ H +++ G + K V A +Q+ I+ G Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRITAGGM 279 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F P L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I VDYAHT +SLE LK +R + + VV GCGGDRD+ KRP+M ++A+ Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRY 398 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465 AD+AI T DNPRSEDP++I ++ G+ I K +R EAIR AI + DV+++A Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458 Query: 466 GKGHETVHIVTN 477 GKGHET I+ N Sbjct: 459 GKGHETYQIIGN 470 >gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus halodurans C-125] gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus halodurans C-125] Length = 486 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 39/459 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR + G +F I G DGH + QA++ GA A+V L + Sbjct: 24 IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL---------S 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++VV ++R+ ++ A++ YG+ P N ++ VTGT+GK+++ +++I Q G + Sbjct: 75 VPVVVVRDSRRAMAQVATKFYGE-PTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMTGL 133 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T I ++ + TTP + L + + + GVT +E SSH L R+ G Sbjct: 134 IGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCDFD 193 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNA 263 F+NL DH+DYH T + Y AK LF +L + A++ ADD S + A Sbjct: 194 VAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADF---AEMT 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYN 314 +V++ G + + A + V I+ G F+ L G+F VYN Sbjct: 251 IAQVVTYGIENE--------ADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L AA G+ + + LE++ V GRFE V + + + VDYAHT +SLE +LK Sbjct: 303 VLAAAAAAYVSGVPLQEIKKSLEEVKGVAGRFETV-KHDQPFTVIVDYAHTPDSLENVLK 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + + G + VV GCGGDRD+ KRP+M +IA A+ AI T DNPRSE+P I ++ Sbjct: 362 TVGELAKGDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMDILRDMEQ 421 Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G G ++ +R EAI AIE+ + D++V+AGKGHET Sbjct: 422 GAKGDSYLMIEDRKEAIFKAIELAKEDDIIVIAGKGHET 460 >gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelateligase [Bacteroides coprosuis DSM 18011] Length = 486 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 240/459 (52%), Gaps = 32/459 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I ++ DSR ++ +F A+ G + DGH +I QAI QGA AI+ +D Sbjct: 20 QNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGAVAILC------EDLPEQK 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + + V ++ L + AS Y +P + ++ VTGT+GK++VA+ + + ++ G Sbjct: 74 NKDITYIQVPHSEAALGILASTFY-DNPSSKLKLVGVTGTNGKTTVATILYKTFKKLG-- 130 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ G ST+ ++ D L TTP + + K L + +G + +E SSH +DQ R+ Sbjct: 131 -YKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVSSHAIDQKRI 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G+K G FTNL RDH+DYH+T Y AK F+ LPK + +++ DD K M Sbjct: 190 SGLKFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDN-LPKNAFSLVNLDD---KNGMVM 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 N + + + +V H + +E + D + G+F VYN L Sbjct: 246 VQNTKSAIHTYSLRSLCDFKARVIESHFNGMI---LEINNTDVVVQFTGKFNVYNLLAVY 302 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G +G + VL + L V GRFE + +G + VDYAHT ++L +L I I Sbjct: 303 GTACLLGQKADEVLIAISTLKSVSGRFETLQA-PKGYTVIVDYAHTPDALTNVLTTIHDI 361 Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G++I V G GG+RD+GKRP+M K ++ +D I+T DNPR EDP++I +++ G+ Sbjct: 362 LDGKGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVIITSDNPRFEDPQEIIKDMLDGLN 421 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + NR +AI+TA + DV+++AGKGHET Sbjct: 422 TEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKGHET 460 >gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas endodontalis ATCC 35406] Length = 516 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 246/464 (53%), Gaps = 41/464 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR + +G +FVAI G + DG F+P+A+ GA+ IV S ++ + + + Sbjct: 43 VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102 Query: 90 TPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V + + L+ A L+ KH ++ VTGT+GK+S A+ + ++ +R G S Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKH-LRLVGVTGTNGKTSTATMLHRLFERLGYKSGL 161 Query: 147 IGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 IG +NR+ TTP PI LA+ L + G +HV +E SSH Q Sbjct: 162 IGTV--------ENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHVFMEVSSHAAHQR 213 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ ++ + G FTNL RDH+DYH T Q Y AK F++L P + A++ ADD ++ Sbjct: 214 RIGSLEFVGGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPN-AFALVNADDRNGSVML 272 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--A 315 + N + + G + F K + + + + D PL G F YN Sbjct: 273 Q---NTSAKKYTYGLK-SFADFKAKVVEGDFRGTELLL--NDRSVWIPLVGAFNAYNITL 326 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMILK 374 + AA + ++ ++L+ L + GRFE + S GGRI VDYAHT ++L +L+ Sbjct: 327 VYAAARLLLPDLEQDVLLQALSTIETAEGRFEVI---SEGGRIGIVDYAHTPDALIKVLE 383 Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 IR + GR+I V G GG+RD+GKRPIM + A +D+ I+T DNPR EDP+ I E+ Sbjct: 384 TIRPLVPQGGRVITVVGAGGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEM 443 Query: 433 IHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G+ + +R AI TA + +DV++VAGKGHET Sbjct: 444 MAGLTPEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKGHET 487 >gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dictyoglomus thermophilum H-6-12] Length = 491 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 158/454 (34%), Positives = 237/454 (52%), Gaps = 17/454 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR ++ G IF A+ G K+DG +I AI++GA A+ + + +R Sbjct: 26 ITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAISKGASAVFLEGEVNNIYGVPLVRVR 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V+ + F S+ NI+ VTGT+GK++ + + + G+ S IG Sbjct: 86 EILDVLSKVSSYFYDFPSKYL-----NIIGVTGTNGKTTTTNLLYHYWKSKGIRSGLIGT 140 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I + + TTP P L + L + + V +++E SSH L R+DGI L Sbjct: 141 IEYKIDDESYPSNFTTPQPQDLQEILRKMVDREVKFLAMEISSHALALKRVDGISLKGAV 200 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+D+H+T + YF AK+++F L A+I D+ ++ R RV Sbjct: 201 FTNLTQDHLDFHKTMEEYFQAKLKIFN-YLEDGGFAVINRDNEWTG----RISLPNRRVF 255 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 V + ++LKK +N + I D L G+F +YN L A G+ I +G Sbjct: 256 WVSLKNGDLYLKKHENTNNGMLLEIGTPLGDLIIDTKLKGKFNIYNILFAVGVLIGLGEP 315 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + + L V GR E + + + VDYAHT + L +L+ ++ T GR+IVVF Sbjct: 316 LEDISKFLSTFKGVKGRLELI-REGQNFDVIVDYAHTPDGLFNVLQTVKEFTKGRVIVVF 374 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKG 443 GCGGDRD KR MG+I+ LADI IVT DNPR+EDP KI +I GI + Sbjct: 375 GCGGDRDPTKRDKMGEISARLADIVIVTSDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIE 434 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR EAI+ AIE+ + D +++AGKGHE I+ N Sbjct: 435 NREEAIKKAIEIAGEGDSVLIAGKGHEDYQIIGN 468 >gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 3655] Length = 488 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 241/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 496 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 159/455 (34%), Positives = 223/455 (49%), Gaps = 19/455 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR I+AG IF+A G DG +IP AIA GA + + F N P Sbjct: 28 SDSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGA---FQWNPEWNVPNQG 84 Query: 95 VDNTRKFLSLFASRLYGK------HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + + + A+RLYG P I VTGT+GK+S+ ++ Q G + IG Sbjct: 85 IKDLKHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIG 144 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +D TTP+P+ + L QG T ++E SSHGLDQ R++G+ Sbjct: 145 TVGNGFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQTA 204 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGC 265 FTNL RDH+DYH T +AY K RLF K A+I +DD Y E++ R A Sbjct: 205 VFTNLTRDHLDYHGTMEAYGAIKSRLFYWRGLKH--AVINSDDPYGAELIGRLKADRPDL 262 Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V S G+ + I + A + +V + L G F N G+ A Sbjct: 263 AVYSYGFGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVLCA 322 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SG 382 G VL LEK+ GR + + S + VDYAHT ++LE L ++ I Sbjct: 323 DGHPLDKVLAALEKIRPATGRMDCI-IESGKPLVVVDYAHTPDALEKALATLQEIKPQGA 381 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IE 441 + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I A+I+ +P Sbjct: 382 ALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPECV 441 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 + +R AI A++ D++++AGKGHET V Sbjct: 442 EADRKAAIGFAVKNAASDDIILIAGKGHETYQDVA 476 >gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila str. Corby] gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] Length = 483 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 252/493 (51%), Gaps = 45/493 (9%) Query: 25 WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 W +R I +++ +DSR ++ G +FVA G DG L+I +A+A GA A+V Sbjct: 10 WIKRDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLP 69 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136 Q T+ + P + + + L A R + +P L VTGT+GK+++A + Q Sbjct: 70 QGI--TLPTAIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G S IG TI D TTP + L + + +G+ V +E SSH Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSH 183 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE + AII DD + Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--AELQWAIINQDDDF 241 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307 +++M + ++ G + + C + Q + + G + + P Sbjct: 242 -QDLMSNVLKTHVKKVTYG-------MHQNCDV-KALQWNMDITGTEIEVKSPWGHQLLK 292 Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G+F +YN+L +A G + V++ + +L PGR E V ++ + VDYA Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEIV---AQSPYVLVDYA 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++T DNPRSE Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409 Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DPE I EI GIP NR EAI A+ D++++AGKGHE+ + N + Sbjct: 410 DPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469 Query: 481 KMSVDCDIIREIL 493 S D +++R ++ Sbjct: 470 VFS-DQEVVRRLM 481 >gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase [Fusobacterium sp. D12] gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase [Fusobacterium sp. D12] Length = 483 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 241/465 (51%), Gaps = 37/465 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + DSR I G IF+A+ G+ DGH FI AI +GA + VS S Q Sbjct: 28 MEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARLVFVSKEVSCQ-------QGIGY 80 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQI-----CQRSGLSSF 145 +++ N RK L + AS Y + IL VTGT+GK++ ++Q+ R G + Sbjct: 81 ILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEY 140 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG + TTP + L K + QG+ ++ +E SSH L+ R++ ++ Sbjct: 141 KIGKEVIEAPN------TTPESLDLIKMIKKAHDQGLEYIVMEVSSHALELGRVNMLEFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+DYH+T + YF AK +LF +L K I DD+Y K + + H Sbjct: 195 GAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGK-GIKIFNIDDSYGKRLWEEFHGVSY 253 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + QGK + + ++++ +S+ G + + G F +YN L + L + Sbjct: 254 GMNKADVQGKILAFEG-----GREEIELSLFGNKKECKIQILGGFNLYNLLGSLALVKEL 308 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+ + L L PGRFE + + + +DYAHT ++LE IL+ ++ I SG+II Sbjct: 309 GMSDEDIFSKLGNLKGAPGRFETLDC-GQDYMVIIDYAHTGDALENILQAVQEIKSGKII 367 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444 +FGCGGDRD KRPIM +IA +D ++T DNPR+E+PE I E+ GF ++ + Sbjct: 368 TIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILEEV---KSGFTKENHI 424 Query: 445 ----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 R EAI I NK D++++AGKGHET I+ G KK D Sbjct: 425 CILERAEAIAEGIRRANKGDMVLIAGKGHETYQIL--GRKKYHFD 467 >gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 496 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 166/491 (33%), Positives = 250/491 (50%), Gaps = 50/491 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR + G +F+ + G+K DGH +I QA A GA A++V S++ I+ Sbjct: 25 ITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGAVAVLVEKEVSVEPGMTVIK-- 82 Query: 90 TPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V +TR + Y ++ VTGT+GK++ ++ I ++G +++ Sbjct: 83 -----VSDTRAAMQAITPFFFDYPSQKLRVIGVTGTNGKTTTTHLIRSILMQAG---YKV 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI + D L TTP + L L+ + + G+ + +E SSH L +R G + Sbjct: 135 GLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEVSSHALALNRTAGCE 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMK 258 G FTN+ RDH+D+H T + Y +AK LF + + A+I DD + +++ Sbjct: 195 FDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGKSAVINTDDPAAAHMLR 254 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFPLP----GE 309 R ++ G Q A + + I +G F+ + PL G Sbjct: 255 EVT---YRAITYGVQDG--------ADLTARNINIQADGAKFEAVTTRGIIPLALQITGL 303 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYN L A G+ +A GI+ +V LE VPGRFE V + + VDYAHT + L Sbjct: 304 FNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAG-QPFTVIVDYAHTPDGL 362 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E ILK R RII VFGCGGDRD+ KRPIMG++A + AD+ + T DNPR+EDP I Sbjct: 363 ENILKTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATSDNPRTEDPVSIL 422 Query: 430 AEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 EI GI ++ G +R +AI A+ + QD++++AGKGHET I+ + Sbjct: 423 KEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGKGHETYQILKDKTIPF 482 Query: 483 SVDCDIIREIL 493 D ++ REI+ Sbjct: 483 D-DREVAREII 492 >gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Yersinia pseudotuberculosis IP 32953] Length = 490 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 165/466 (35%), Positives = 233/466 (50%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 14 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q S Sbjct: 74 IHGVPVIYLRNLNQHLSTLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWSQ----A 128 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q R Sbjct: 129 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 189 VAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLS 246 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A ++ G+ G ++ KV N + + + L G F V N Sbjct: 247 QLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSN 306 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA + G A +L L V GR E + + VDYAHT ++LE L Sbjct: 307 LLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALA 365 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ Sbjct: 366 AARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILS 425 Query: 435 GI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ G ++ R EA+ +AI + DV+++AGKGHE +V N Sbjct: 426 GLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 471 >gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Gallibacterium anatis UMN179] Length = 488 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 171/489 (34%), Positives = 257/489 (52%), Gaps = 23/489 (4%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F + E+ +N + DSR +QAG +F+ ++G++ DG F QA+A GA +++ S Sbjct: 8 FAISLLEQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQD 67 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC 137 N P + V LS A Y HP ++ VTGT+GK++VA+ + Q Sbjct: 68 QARIEWHDNIPFIYVYRLAHQLSSLAGAFY-HHPSQKVTLVGVTGTNGKTTVANLLTQWT 126 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G S +G + F Q + TT S + + + L+ + V++E SSHGL Sbjct: 127 HLLGKKSAVMGTIG--NGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYS 253 QHR+D ++ A FTNL RDH+DYH T QAY +AK LF +P II ADD Sbjct: 185 VQHRVDALQFAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNR---IINADDEVG 241 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF 310 K+ +++ +A L +Q + LK ++++Q VTI+V+ +F L GEF Sbjct: 242 KQWLQQMDDAIEVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEF 301 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L+A +++G + + + + +L V GR E R I VDYAHT ++L+ Sbjct: 302 NVCNLLLATATLLSLGYSLSCLSDSVNQLQGVCGRMECFTAEGRPTAI-VDYAHTPDALD 360 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R G++ VFGCGGDRD+GKRP M KIA LAD ++TDDNPR+ED I Sbjct: 361 KALRAARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIIN 420 Query: 431 EIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I+ G+ F R +A+ A N DV++VAGKGHE I+ + + S D Sbjct: 421 DIVQGLD-FPNNATIIHQRKQALVYAFACANANDVILVAGKGHEDYQIIGHTKHHFS-DR 478 Query: 487 DIIREILGL 495 +I+ ++L Sbjct: 479 EIVSQLLNF 487 >gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus R309803] Length = 491 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G I K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ V++ ++KL VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++ G G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGHETYQII 466 >gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB] Length = 495 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 235/465 (50%), Gaps = 23/465 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++ DSR +G +FVA+ G++ DG FIPQAIAQG A+V + D Sbjct: 20 RPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVAEAEGEAADGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + P + G +G + + Q + Q + L + Sbjct: 80 HGVPVIYLAQLPQRLSALAGRFY-QQPGEKQTLIGVTGTNGKTTTTQLLAQWATL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + + TT S + + L+ L+ +G + ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLTAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH Q+Y +AK LF E + AI+ ADD + + R Sbjct: 195 AALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSE--HQVGQAILNADDEVGRRWLAR 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G G+++ V N + S + + PL G F V N Sbjct: 253 LPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEINSPLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 ++A +++ A ++ +L V GR E + + VDYAHT ++LE L+ Sbjct: 313 MLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP+ I +I+ G Sbjct: 372 ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYADVVVITDDNPRSEDPQAIVNDILTG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + PG R +A+ I D+++VAGKGHE I+ N Sbjct: 432 LLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKGHEDYQIIGN 476 >gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 200] Length = 482 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 246/470 (52%), Gaps = 31/470 (6%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 4 FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + + +I Sbjct: 61 ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + IG + I + + TTP + L + S + QGV +E SSH LD Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251 R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A++ +DD Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++E M+ + V++ G + I K + T+ + + L G+F Sbjct: 235 VTEEYMR---STAATVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367 VYN L A + G+ ++ +++L VPGRFE V GG+ Y VDYAHT + Sbjct: 292 NVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVVD----GGQNYTVIVDYAHTPD 347 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407 Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I +++ G G + +R EAI AI + D++++AGKGHET I+ Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457 >gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris] Length = 483 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 251/493 (50%), Gaps = 45/493 (9%) Query: 25 WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 W +R I +++ +DSR ++ G +FVA G DG L+I +A+A GA A+V Sbjct: 10 WIKRDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLP 69 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136 Q T+ + P + + + L A R + +P L VTGT+GK+++A + Q Sbjct: 70 QGI--TLPTGIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G S IG TI D TTP + L + + G+ V +E SSH Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSH 183 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE + AII DD + Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--AELQWAIINQDDDF 241 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307 +++M + ++ G + + C + Q + + G + + P Sbjct: 242 -QDLMSNVLKTHVKKVTYG-------MHQNCDV-KALQWNMDITGTEIEVKSPWGHHLLK 292 Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G+F +YN+L +A G + V++ + +L PGR E V ++ + VDYA Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRMEIV---AQSPYVLVDYA 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++T DNPRSE Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409 Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DPE I EI GIP NR EAI A+ D++++AGKGHE+ + N + Sbjct: 410 DPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469 Query: 481 KMSVDCDIIREIL 493 S D +++R ++ Sbjct: 470 VFS-DQEVVRRLM 481 >gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 500 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/481 (33%), Positives = 252/481 (52%), Gaps = 40/481 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S DSR I G +FVA+ G DGH F+ AI GA A+VV+S+ + + + Sbjct: 22 INNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVAVVVNSSSDVPCLAK--YPD 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ V++T K L A+ YG+ E N++ +TGT+GK++ A+ + ++ G F Sbjct: 80 IQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTTATLLYKLFLGMG---FGA 136 Query: 148 GPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G STI ++ ++ TTP+ + + L+ + G + +E SSH Q R+ G+ Sbjct: 137 GLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFMEVSSHATVQQRIAGLT 196 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH+T Y +AK +LF + LP+ + A+ ADD +++ Sbjct: 197 FRGAVFTNLTQDHLDYHKTMDNYRDAK-KLFFDHLPQTAFALTNADDRNGNFMLQNT--- 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKD-FDFLFPLPGEFQVYNA 315 + Y + + K I N + + ++ +GK+ ++ P G F N Sbjct: 253 --KAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPFVGSFNAQNL 310 Query: 316 LV----AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 AA LC GID+ +L L +L V GRFE + G VDYAHT ++L+ Sbjct: 311 TAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVI--RMAGISAIVDYAHTPDALKN 368 Query: 372 ILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L I + S R++ V GCGGDRD+ KRPIM + A +D ++T DNPR+EDP+ I Sbjct: 369 VLSTINDVKSPDSRVVTVVGCGGDRDKTKRPIMAQEAAAQSDTLVLTSDNPRTEDPQSIL 428 Query: 430 AEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 ++ G + I +R +AI+TA ++ D+++VAGKGHE IV G++K Sbjct: 429 DDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKGHENYQIV--GKEKRHF 486 Query: 485 D 485 D Sbjct: 487 D 487 >gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon 472 str. F0295] Length = 481 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 252/478 (52%), Gaps = 31/478 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I V DSR + +FVAI G + DGH FI +A+AQGA A++ + + Sbjct: 20 EVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQGATAVLCET------MPTQL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + V++T + A+ YG+ + + + VTGT+GK+++A+ + + ++ G Sbjct: 74 PQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLVGVTGTNGKTTIATLLYDMFRKFG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + G ST+ ++ +D + TTP PI L L + G +V +E SSH + Q R+ Sbjct: 131 HRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFMECSSHAIAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ G F+NL RDH+DYH+T + Y NAK F ++LPK++ AI ADD + VM + Sbjct: 191 GLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFF-DMLPKQAFAITNADDK-NGMVMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + S F K+ H + + + + G + F G+F V N L Sbjct: 249 TRAAVKTYSTRSMADF--KAKILECHF-EGMYLEINGAEVGVQF--IGKFNVSNLLAVYA 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G +L + LH V GR + + ++ G VDYAHT ++LE +L I + Sbjct: 304 TAVMLGKRPEDILLVMSTLHSVNGRLQPL-SSPEGYTAIVDYAHTPDALENVLNAIHEVL 362 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + G++I V G GG+RD+GKRP+M A+ +D I+T DNPR EDP+ I +++ G+ Sbjct: 363 NGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVIITSDNPRFEDPQAIINDMLAGLNA 422 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I +R EAIRTA M K DV++VAGKGHE + G K D ++++E Sbjct: 423 QQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKGHEDYQEI-EGVKHHFDDKEVVKE 479 >gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 185/516 (35%), Positives = 269/516 (52%), Gaps = 52/516 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DLI K + L I + R R I+ + SDSR AG ++VA+ G DGH FI Sbjct: 3 MNLEDLIKK-----VQILDI--LGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+AQGA A+V ++ F I ++ + V+++ K L AS +G E N++ Sbjct: 56 DAAVAQGAAAVVCNA------FPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 +TGT+GK+SV + + + + G S I ST+ D L TTP I L K L Sbjct: 110 GITGTNGKTSVTTILYDLFKYLGFKSALI---STVEYRIADKVLPSTHTTPDVITLNKIL 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G + +E SSHG+ Q R + + FTN+ DH+DYH+T Y K F Sbjct: 167 AEAVEAGCEYAFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFF 226 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-- 292 + L P ++ AI DD K +++ + R K LK + H K T Sbjct: 227 DGLNP-DAVAITNLDDKNGKIMLQ--NTKATR--------KSYALKTMADYHGKTTETDF 275 Query: 293 ----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ +GK+F L G F VYN L+A + + G S VL+ + L V GRFE Sbjct: 276 NGMLLNFDGKEF--WTTLTGRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFET 333 Query: 349 VGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI 405 + S GG +V DYAHT ++L+ IL +I I + R+I VFGCGG+RDQ KRP MGKI Sbjct: 334 L--KSDGGIFFVIDYAHTPDALDNILDSINEIRTKNERLITVFGCGGERDQTKRPEMGKI 391 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQD 460 + + + I+T DNPRSE+P I EI G+ P + K +R +AI+ AI+ +D Sbjct: 392 STRKSTLTIITSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKD 451 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +++VAGKGHE + NG+K D + I E+ L+ Sbjct: 452 IVLVAGKGHENYQEI-NGQKVHFDDKETIVELTRLM 486 >gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Alcanivorax borkumensis SK2] Length = 490 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 234/467 (50%), Gaps = 30/467 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILV 94 DSR + G F+A+ G DG F+ QAIA GA A++ + +S+Q A R N P L Sbjct: 28 DSRKVMPGDAFLAVQGVASDGRQFVSQAIAAGAVAVLAEAETFSVQQEQAVPRVNFPGL- 86 Query: 95 VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + A+R YG+ N++ VTGT+GK+S+ F++ G +G T Sbjct: 87 ----SRSVGELAARWYGEPGSAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVG---T 139 Query: 153 ISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + +DN TTP PI L L+ + G V++E SSH LDQHRL + Sbjct: 140 LGLGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAMEVSSHALDQHRLGPTPVSVAV 199 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 F+NL RDH+DYH +AY AK LF K A+I DD + ++ + G R + Sbjct: 200 FSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKL--AVINCDDPVAYSLVGCLAD-GVRCV 256 Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G Q G + V ++V G+ F PL G F + N + AG+ G+ Sbjct: 257 TFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPLFGRFNLSNLMAVAGILHGQGV 316 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + L + VPGR E V + + VDYAHT + LE L+ R +GR+ + Sbjct: 317 STDSLAGALAAITPVPGRMEPV-QQAGCPTVIVDYAHTPDGLEKALQACRAHFAGRLFCI 375 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444 GCGGDRD GKRP M +A AD + T DNPRSEDP+KI E+ G+ + G+ Sbjct: 376 IGCGGDRDTGKRPQMAAVAERGADHVVFTSDNPRSEDPQKIIDEMCAGL---TDTGSVQI 432 Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 R A+ ++ + DV+++AGKGHE V NG + S D D+ Sbjct: 433 IVERDRAVMDTVQAASDGDVILLAGKGHEDYQEV-NGVRYPSDDRDL 478 >gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Candidatus Regiella insecticola LSR1] Length = 514 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 170/496 (34%), Positives = 256/496 (51%), Gaps = 38/496 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-------------- 75 ++E+ DSR + G +F+A+VG++ DG +I QAIAQGA A++ + Sbjct: 27 LSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSIPTQQRG 86 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 + + + TI+ PI+ +++ + LS A + Y + ++ VTGT+GK+++ + Sbjct: 87 GFKGEGYITTIQG-VPIVYLNHLNQHLSKLAGQFYHQPGARLKLVGVTGTNGKTTLTQLL 145 Query: 134 QQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 Q Q G S +G S A +N TT S I + K L++ QG ++E Sbjct: 146 AQWSQALGNISAVMGTLGNGLLQQSLIATEN--TTGSAIDVQKTLNHFVMQGANFAAMEV 203 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL QHR+ + A FTNL RDH+DYH Y AK +LF KE II AD Sbjct: 204 SSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDMARYEAAKWQLFSTHHAKEK--IINAD 261 Query: 250 DAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFL 303 D + + + +A + ++G+++ K + ++ Q VT+ + + + Sbjct: 262 DQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETKNIN--YHAQGVTLRFDSSWGEGRLV 319 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F V N L+A +A+ ++ + +L V GR E R + VDYA Sbjct: 320 SRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQAVCGRMEVFNALDRP-TVIVDYA 378 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L R G++ VFGCGGDRD+GKR +MG IA AD +VTDDNPR+E Sbjct: 379 HTPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRALMGGIAEQWADHLVVTDDNPRTE 438 Query: 424 DPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP I A+I+ G I + NR EAI + + +QDV+VVAGKGHE +V N Sbjct: 439 DPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAKEQDVVVVAGKGHEDYQLVGNRRL 498 Query: 481 KMSVDCDIIREILGLI 496 S D I+ ++LG I Sbjct: 499 TFS-DRHIVAQLLGAI 513 >gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 5216-82] Length = 495 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 249/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VF CGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM 9187] Length = 489 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 164/489 (33%), Positives = 258/489 (52%), Gaps = 29/489 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q E + ++ D+R +Q G +F+A+ G+ DG +F+ QA +GA AI+ ++ D Sbjct: 14 IQAPEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAILFDNS----DG 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS----VASFVQQI 136 + P + V + +S A Y + +++ VTGT+GKS+ +A++ + Sbjct: 70 FVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQLIANWTELF 129 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 QR G+ +G A +N TT S I + + L+ ++ V ++E SSHGL Q Sbjct: 130 GQRGGVLG-TLGNGLFGQLHATEN--TTGSAISIQQELARFVAEKVDVAAMEVSSHGLVQ 186 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+ ++ A FTNL RDH+DYH T QAY AK +F++ P+ I+ ADDA ++E Sbjct: 187 HRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPE--CCILNADDATAREW 244 Query: 257 MKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQ 311 + + A G + G F++ V ++ Q +TIS+ D + PL G+F Sbjct: 245 LLQMPQAVVYGIDQQLPEHPGPFVYATDV--KYHPQGITISIHSSWGDGVLSAPLLGKFN 302 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L A + + + D + + +L V GR E G N + VDYAHT + LE Sbjct: 303 VSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFG-NQDQPLVVVDYAHTPDGLEK 361 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R G + +FGCGGDRD+GKRP M IA AD I+TDDNPR+EDP I A+ Sbjct: 362 ALQAARQHCHGHLFCLFGCGGDRDRGKRPQMAAIAEQWADTLILTDDNPRTEDPAAIIAD 421 Query: 432 IIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + G+ IE +R +AI+ A+ D++++AGKGHE I+ EK D + Sbjct: 422 MCAGLQKPEQAHIEH-SRPKAIQLALAQAVPGDIILLAGKGHEDYQIIGK-EKHHYSDRE 479 Query: 488 IIREILGLI 496 + ++LG++ Sbjct: 480 TVMQLLGVM 488 >gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 175-1] gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 116-1] gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 146-1] gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 1827-70] gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 3431] gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli LT-68] gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia fergusonii ECD227] Length = 471 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Leptospirillum sp. Group II '5-way CG'] Length = 509 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 242/475 (50%), Gaps = 25/475 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQD----FS 83 ++ ++ DSR ++ G +F+ G F+ +A+ +GA +V +A+ D S Sbjct: 28 RVLNLTDDSRQVEEGALFLIRPGEGFRWE-FVNEALDRGAFYLVADRNAFPEIDSRPALS 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSG 141 + IR + + +V+N + + AS +G ++ VTGT+GK++ + + +C+ G Sbjct: 87 SRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKTTSSFLTRSVCRAGG 146 Query: 142 LSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L IG + + TTP I + + G+ VS+E SSH LDQ RL Sbjct: 147 LPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEVSSHALDQDRLA 206 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMK 258 G FTNL RDH+DYH+T +AYF AK +L +E A+++ D Y + K Sbjct: 207 GTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHTGDEYGARLAK 266 Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 G RVL+ G I V + + T+ + L G + + N L Sbjct: 267 ELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G A+G+ + + E + L VPGRFE V + + G + VDYAHT ++L +L +R Sbjct: 327 AVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSPA-GFSVIVDYAHTDDALSNLLSAVR 385 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +T G++I VFGCGGDRD+GKRP MG +A L+D ++T DNPR+E+PE I EI P Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTENPESILDEI---EP 442 Query: 438 GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G E G +R AI AI D +V+AGKGHE I+ G++K+ D Sbjct: 443 GLRETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKGHENYQIL--GKEKIHFD 495 >gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Actinobacillus succinogenes 130Z] gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus succinogenes 130Z] Length = 488 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 240/481 (49%), Gaps = 27/481 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + E+ DSR ++ G +FVAI G+ DG FIP AI + A A++ + Sbjct: 19 RFTEMCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLAECDNESEHLQVRFER 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSG----- 141 N P++ N + LS A + Y + ++ VTGT+GK++V+ + Q + G Sbjct: 79 NIPVISYFNLPEHLSEIADKFYDGPSQRLILTGVTGTNGKTTVSQLLAQWARILGNIPAV 138 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + + G + S A TT S I + +L+ QG ++E SSHGL Q R++ Sbjct: 139 MGTVGNGLLGQLQSAAN----TTGSAIEVQSSLARFIEQGADFAAIEVSSHGLVQKRIEA 194 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--- 258 +K A FTNL RDH+DYH + AY +AK RLF L K II ADD + ++ Sbjct: 195 LKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALPSKYQ--IINADDEVGRTWLQELP 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RA C Q ++ + + ++ + D L G F V N L+ Sbjct: 253 RAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKFASSWGDGVLASRLIGAFNVSNLLLV 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G ++ + +L V GR E + + + VDYAHT ++LE L+ RT Sbjct: 313 LATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVHKP-TVIVDYAHTPDALEKALQAART 371 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G++ +FGCGG+RD GKRP+M +IA LAD IVTDDNPR+EDPEKI A+I G Sbjct: 372 HCRGKLWCIFGCGGERDNGKRPMMAQIAESLADRVIVTDDNPRTEDPEKIVADI---TAG 428 Query: 439 FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 F N R AI AI+ + DV+++AGKGHE IV EK+ D + ++ Sbjct: 429 FARLKNVQIIHAREAAICAAIQSAAENDVILIAGKGHEDYQIVGK-EKRYFSDQETAKKY 487 Query: 493 L 493 L Sbjct: 488 L 488 >gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli UM146] gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 110-3] Length = 471 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/476 (35%), Positives = 245/476 (51%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ G+ + Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli CFT073] gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli 83972] Length = 495 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 431 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 432 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 490 Query: 493 LGLI 496 LG+I Sbjct: 491 LGVI 494 >gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli EPECa14] Length = 471 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides helcogenes P 36-108] Length = 483 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 157/489 (32%), Positives = 251/489 (51%), Gaps = 49/489 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ P I + + +I V+ DSR I AG +F+A+ G + DGH +I Sbjct: 3 MKLSDLLKTIQPVHITGST-------DLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P AI +GA A++ +D +S + V ++ + A+ YG ++ Sbjct: 56 PAAIEKGAIAVLC------EDLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 VTGT+GK+++A+ + + G +++G ST+ ++ D + TTP PI L + L Sbjct: 110 GVTGTNGKTTIATLLYNTFRYFG---YKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLL 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++ G + +E SSH + Q R+ G+K G FTNL RDH+DYH+T + Y AK + F Sbjct: 167 GEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFF 226 Query: 235 EELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 ++ +PK + ++ DD ++ R + R LS ++GK + H + + N Sbjct: 227 DD-MPKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLS-DFKGKVLESHFEGMLLDFNN 284 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ + GK F N L G + +G VL L LH V GRF+ Sbjct: 285 HELAVRFIGK-----------FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDA 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIA 406 + + +G VDYAHT ++L +L I + G++I V G GG+RD+GKRPIM K + Sbjct: 334 I-RSPKGFTAIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKES 392 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDV 461 L+D I+T DNPR E+P+ I +++ G + + +R EAI+ A + DV Sbjct: 393 ARLSDRVIITSDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDV 452 Query: 462 LVVAGKGHE 470 ++VAGKGHE Sbjct: 453 ILVAGKGHE 461 >gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli ABU 83972] Length = 490 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/484 (34%), Positives = 248/484 (51%), Gaps = 24/484 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 15 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 75 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 129 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 130 GEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 190 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAK 247 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + S D + L G F V N Sbjct: 248 LPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNL 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 308 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G Sbjct: 367 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAG 426 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + G+ + R EA+ A+ + DV++VAGKGHE IV N S + R + Sbjct: 427 MLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-L 485 Query: 493 LGLI 496 LG+I Sbjct: 486 LGVI 489 >gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia albertii TW07627] Length = 495 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 250/487 (51%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + Sbjct: 195 AALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 488 Query: 490 REILGLI 496 R +LG+I Sbjct: 489 R-LLGVI 494 >gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 494 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/514 (30%), Positives = 262/514 (50%), Gaps = 55/514 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DL+ ++ ++ ER I + DSR + +F+ I G + DGH F Sbjct: 1 MKLMDLL--------EEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I QAI +GA AIV + D ++ V +TR+ ++ S YG+ +++ Sbjct: 53 IDQAIKKGAIAIVAQKDMTGLDGVTWVQ-------VKDTRQVMAQLGSTFYGRPSQHLEL 105 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+S +++I + ++G TI+++ + + TTP I L + Sbjct: 106 IGVTGTNGKTSTTYMIKKILENH---ERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQI 162 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 ++ + VT +E SSH L R+ + G FTNL +H+D+H+ Y AK +L Sbjct: 163 FKEMADEKVTECVMEVSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKL 222 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F +I DD + + + +++ G +KK + K + Sbjct: 223 F---YLTTVANVINIDDPHGAMIAEEVKKLKPSLITFG-------IKKQATVMAKN-IAT 271 Query: 294 SVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +++ FD + P +PG F YNAL + IAIG+ ++++ ++ + VPG Sbjct: 272 TLKDVTFDLVTPVGEARVTVKIPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPG 331 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 RFE V + + VDYAHT +++E +++ + +T R+I VFGCGGDRD+ KR +MG+ Sbjct: 332 RFESV-LGIKDFSVIVDYAHTPDAIENVIQAAKNVTEHRVITVFGCGGDRDRTKRSVMGE 390 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNK 458 I+ L+D++++T DNPR+EDP KI I GI KG +R EAIR A++ K Sbjct: 391 ISGSLSDLSVITSDNPRTEDPYKILMMIEAGIKK--TKGLYTIIEDRREAIRYAMKEAKK 448 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 D++++AGKGHE + + DC + REI Sbjct: 449 GDIVLIAGKGHEATQQIGSNVIIFD-DCGVAREI 481 >gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli E128010] Length = 471 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria ivanovii FSL F6-596] Length = 491 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 154/484 (31%), Positives = 241/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + ++N+++ DSR + G +F+ I G DGH F +A GA AI Sbjct: 5 ELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + T+ P++ V +T++ +++ A+ YG + ++ +TGT+GK++V Sbjct: 65 IAEK---------TVDVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + QGV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y AK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD +E ++ V++ G K A + I+ G FD Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KAAADFRASNIQITSHGSTFDLD 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I + +E + V GRFE V + Sbjct: 285 TPGGHFKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHA-GQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDY+HT + L +L+ I R+ VV GCGGDRD+GKRP M K+A+ A + Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYATNPV 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P +I ++I G+P ++ NR +AI+ AI DV+++AGKGHE Sbjct: 404 FTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKGHED 463 Query: 472 VHIV 475 I+ Sbjct: 464 YQII 467 >gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 115-1] gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 187-1] Length = 471 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri 4343-70] gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-218] Length = 495 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 165/468 (35%), Positives = 242/468 (51%), Gaps = 29/468 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DS AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSCVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + + Sbjct: 195 AALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ +V + + S D + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 ARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC 33574] Length = 483 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 253/480 (52%), Gaps = 31/480 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR I G +FVA+ G + DGH FI +AI GA+A++ +D Sbjct: 20 EVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAKAVLC------EDMPENT 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + V +T + A+ +G + + VTGT+GK++VA+ + + ++ G Sbjct: 74 VEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVATLLYNMFRKMG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G ST+ ++ +D + TTP PI L + L + G +V +E SSH + Q R+ Sbjct: 131 HKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECSSHAIAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+K G FTNL RDH+DYH+T + Y NAK F+ L K++ AI ADD + VM + Sbjct: 191 GLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDG-LSKDAFAITNADDK-NGMVMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A + S F ++ H + + + V+G + F G+F V N L G Sbjct: 249 CKATIKTYSTRTMADF--RARIIECHF-EGMYLEVDGHEVGVQF--IGKFNVSNLLAVYG 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +G VL + L V GR E + ++ G +DYAHT ++LE +L I + Sbjct: 304 AAIMLGKKPEDVLVVMSTLKSVSGRLEPI-RSAEGVTAIIDYAHTPDALENVLSAIHEVL 362 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + GR+I V G GG+RD+GKRP+M A+ +D I+T DNPR E+P+ I +++ G+ Sbjct: 363 NGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVIITSDNPRFEEPQDIINDMLAGLNA 422 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R EAIRTA M K DV+++AGKGHE + G K D +++REI Sbjct: 423 QQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHEDYQEI-KGVKHHFDDKEVVREIF 481 >gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli STEC_7v] Length = 471 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV+++AGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus kaustophilus HTA426] gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Geobacillus kaustophilus HTA426] Length = 489 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 173/492 (35%), Positives = 255/492 (51%), Gaps = 50/492 (10%) Query: 13 ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+ LS P W N + DSR + +G +F + G DGH F +A+A+GA Sbjct: 2 KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126 AIV S+ + P+++V ++R+ +++ A YG+ H +++ VTGT+GK Sbjct: 62 AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 ++ S ++QI +++G + IG S+ N TTP + L + + +GV Sbjct: 113 TTTTSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240 V++E SSH L Q R+ G FTNL +DH+DYH T + Y NAK LF +L + Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230 Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P A++ DD S+ H +++ G + K V A +Q+ ++ G Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRMTAGGM 279 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F P L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I VDYAHT +SLE LK +R + + VV GCGGDRD KRP+M ++A+ Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRY 398 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465 AD+AI T DNPRSEDP++I ++ G+ I K +R EAIR AI + DV+++A Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458 Query: 466 GKGHETVHIVTN 477 GKGHET I+ N Sbjct: 459 GKGHETYQIIGN 470 >gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136] Length = 484 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 156/486 (32%), Positives = 251/486 (51%), Gaps = 43/486 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I + DSR ++AG +FVA+ G + DGH +I +AI +GA AIV + T+ Sbjct: 20 DKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKGASAIVCET------LPDTL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + V +T + A+ YG +++ VTGT+GK+++A+ + + ++ G Sbjct: 74 NEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTIATLLYNMFRKFG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++G ST+ ++ + TTP PI L + L ++ +G + +E SSH + Q R+ Sbjct: 131 YKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFMEVSSHSVAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+K G FTN+ RDH+DYH+T + Y AK F+ LPK + A+ ADD + VM + Sbjct: 191 GLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDN-LPKTAFALTNADDK-NGSVMVQN 248 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYN 314 A S L+ +C K + + + + ++ + F G F N Sbjct: 249 TKAKIATYS---------LRTLCEFKGKVLEDGFEGMLMDINNREVNVQF--IGRFNASN 297 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G +G VL L L V GRF+ + + +G VDYAHT ++L +L Sbjct: 298 LLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDAL-RSKKGYTAIVDYAHTPDALVNVLN 356 Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 I + GR+I V G GG+RD+GKRPIM + A +D I+T DNPR E+P+ I ++ Sbjct: 357 AIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVIITSDNPRFEEPQDIINDM 416 Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + G+ + +R EAIRTA + DV++VAGKGHE + G K D + Sbjct: 417 LAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKGHENYQEI-KGVKHHFDDKE 475 Query: 488 IIREIL 493 ++ EI Sbjct: 476 VLAEIF 481 >gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM 273] gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlorobium luteolum DSM 273] Length = 523 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/480 (35%), Positives = 246/480 (51%), Gaps = 32/480 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR ++ G +FVA+ G DG FI AIA+GA A+V +DF + N Sbjct: 37 VRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKDAIARGASAVVS------EDFPMELALN 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + + A+ Y HP + I+ VTGT+GK++ A + I +G+S Sbjct: 91 GPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGTNGKTTTARLISSILSMNGISCGY 150 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T + D + TTP L + + G VS+E SSH L+ R+ GI Sbjct: 151 IG---TGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGCRAVSMEVSSHALELGRVHGI 207 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260 A FTNL DH+D+H + ++Y AK +LF++L P I +D + + R Sbjct: 208 AFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPG-GIGIFNTEDPMATFMAARVAE 266 Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQVY 313 A C + + G+ G L A+ ++ V SV EG + F L G F V Sbjct: 267 EQRACCSLDAAGFGGMRCGLN-YGAMVRREGVGSSVVALSFPEGVQPEEEFRLLGRFNVM 325 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L AA +G+ + V L L V GR E V G VDYAHT ++L L Sbjct: 326 NMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFEGTAIVDYAHTPDALHQSL 385 Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--R 429 +R + GR++VVFGCGG+RD+ KRP MG+IA+++AD +++T DNPR EDPE I Sbjct: 386 GTLRELLPPDGRLLVVFGCGGNRDRQKRPEMGRIAIEMADFSVITSDNPRDEDPEAILDE 445 Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 E G + +R EAIRTA+ ML D+L+VAGKGHE + T+G ++ D +++ Sbjct: 446 IEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAGKGHE-CYQETHGRREHFSDREVL 504 >gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium sp. SKA34] Length = 505 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 247/473 (52%), Gaps = 25/473 (5%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P++ E +I+ ++ DSR + +G +F A+ G+ DG +I AI GA AI+ + Sbjct: 23 LPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIAN 82 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQIC 137 + ++ I+ + + LS A R + HP+ LA VTGT+GK++++ + Q Sbjct: 83 EGDIALKDGVYIIYLQDLNHKLSAIAGRFF-DHPDQKLALYAVTGTNGKTTISQLLAQWA 141 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +G + +G T + + + TT S I + + LS L QG ++E SSHGL Q Sbjct: 142 NLAGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQLVEQGADFTAMEVSSHGLVQ 201 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ I A FTNL RDH+DYH Q Y NAK LF E + AII ADDA Sbjct: 202 GRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTE--HQSRMAIINADDAVGASW 259 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLK-KVCAIH---NKQQVTISVE-----GKDFDFLFPLP 307 +K NA +++ Q H K+ A + Q VTI + GK F PL Sbjct: 260 LKDIPNA--VAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEFDSSWGLGK---FTAPLV 314 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F N L+A +A A +LE +L V GR E V ++ + VDYAHT + Sbjct: 315 GSFNATNLLLALATLLATNHSMADLLEKAPQLQAVIGRME-VFQDTDKAMMVVDYAHTPD 373 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L+ +R G++ +FGCGGDRD GKRP+M +IA L+D I+TDDNPRSEDP Sbjct: 374 ALEKALQALRVHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCIILTDDNPRSEDPNG 433 Query: 428 IRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I +++ G+ +R A R A+ ++QD+++VAGKGHE I+ + Sbjct: 434 IVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKGHEDYQILAD 486 >gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602] Length = 495 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 167/472 (35%), Positives = 238/472 (50%), Gaps = 16/472 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+ G+ DG FIPQAIAQG A+V + Q + P++ + Sbjct: 28 DSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGVAAVVAEAKGEQQHGTVCQMHGVPVVYL 87 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ LS A R Y + P L + G +G + + Q + Q S L T+ + Sbjct: 88 EDLNILLSELAGRFY-QQPGKELRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGN 146 Query: 156 FAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 DN + TT S + + L+ L G T ++E SSHGL QHR+ + A +FTN Sbjct: 147 GLLDNVIPAENTTGSAVQVQHILADLVKLGATFAAMEVSSHGLVQHRVAALPFAAAAFTN 206 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-- 269 L RDH+DYH Q+Y +AK +LF + II ADD + + NA + Sbjct: 207 LSRDHLDYHGDMQSYEDAKWQLFAS--HQVGQKIINADDEVGARWLAKTPNAIAVSMEDK 264 Query: 270 --VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ G+++ + V N V I + L G F V N LVA +++ Sbjct: 265 IPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLESRLMGAFNVSNLLVALATLLSLDY 324 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A +L +L V GR E + + VDYAHT ++LE L R G + V Sbjct: 325 PLAQLLATASQLQPVCGRMEVFNAPGKPTAV-VDYAHTPDALEKALAAARLHCRGTLWCV 383 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GN 444 FGCGGDRD+GKRP+MG IA AD IVTDDNPRSE+P I A+I+ G+ G +++ Sbjct: 384 FGCGGDRDKGKRPLMGAIAEQYADRVIVTDDNPRSEEPRAIVADILAGLLDAGRVQEIHG 443 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI + DV+++AGKGHE +V N S + R +LG+I Sbjct: 444 RAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNQRLDYSDRVTVAR-LLGVI 494 >gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces viscosus C505] Length = 528 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 236/463 (50%), Gaps = 38/463 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DS G +FV + G G F A+A GA A V++ A Q T TP+ Sbjct: 50 VSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVA-VLTDADGAQIVHQTA-PGTPV 107 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142 LV + R + ++ +Y HP L AVTGT+GK++ A F+ I C +G Sbjct: 108 LVHSDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++G S S R T +P+ L + ++ V S+EASSH + HRLDGI Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDKVGAASLEASSHAIVLHRLDGI 220 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL RDH+D+H+T + Y AK +LF + ++ DD + + A Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARR--GVVCVDDQWGAALAAEAPI 278 Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316 RV + Y G+ ++ V + T+ +G+ + PLPG V NA Sbjct: 279 EIDRVRA--YPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAA 336 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375 +A + I G+ +A L H +PGR + + + R G VD+AHT +++E+ LK Sbjct: 337 LALVMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKA 396 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP+ IR I+ G Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEG 456 Query: 436 IPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470 + G +E A+R +E+ D ++V GKGHE Sbjct: 457 VRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499 >gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase [Serratia symbiotica str. Tucson] Length = 495 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 163/471 (34%), Positives = 235/471 (49%), Gaps = 35/471 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + +D + Sbjct: 20 RALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEANGQAEDGAIVEM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+ + + LS A R Y P L + G +G + + Q + Q S L + Sbjct: 80 HGVPIIYLSQLNQRLSALAGRFY-HQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + L L+ L+ QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A F+NL RDH+DYH Y AK LF I+ ADD + + + Sbjct: 195 AALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAG--HDVGQMIVNADDQVGQHWLSK 252 Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + G G+++ + N + S D + L G F V N Sbjct: 253 LPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFSSNWGDGEIASQLMGAFNVNNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G ++E +L V GR E + + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALGYPLDKLVETGSRLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R GR+ VFGCGGDRD+GKRP+MG IA AD ++TDDNPR+E+P+ I +I+ G Sbjct: 372 ARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFADRVVLTDDNPRTEEPQAIINDILAG 431 Query: 436 ---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IPG R EA+ +AI +QDV++VAGKGHE +V N Sbjct: 432 LLDAGQALVIPG------RAEAVTSAIMQAQEQDVVLVAGKGHEDYQLVGN 476 >gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Flavobacteriales bacterium ALC-1] Length = 487 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 161/512 (31%), Positives = 259/512 (50%), Gaps = 50/512 (9%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M L+D++YK ++ S+ +N++ DSR IQ +FVAI G DGH + Sbjct: 2 MILKDILYKVTINAVVGSTSV--------SVNKIEFDSRQIQVNDVFVAISGTVTDGHRY 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I + I GA IV ++ + + V N+ K L+ A+ Y EN+ Sbjct: 54 IDRVIDAGATTIVCEV------LPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----PSPIYLAKA 173 + VTGT+GK++V+S + Q+ +++G +++G ST+ P + + + Sbjct: 108 IGVTGTNGKTTVSSLLYQLFKKAG---YKVGLLSTVKIMVDTTTYKATHTTPDSLTINRY 164 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L ++ +GV +E SSHG+ Q R +G++ G FTNL DH+DYH T Y + K +L Sbjct: 165 LKQMNDEGVEFCFMEVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVK-KL 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + LPK++ A+ DD G +L K+ + K A + Q + Sbjct: 224 FFDQLPKDAFALSNMDD-----------KNGLAMLQNTQAKKYTYALKNYADYRAQILEN 272 Query: 294 SVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 G D + L G F YN L G +G++ +L + +L V GRF++ Sbjct: 273 EFSGLLLKVNDSELWTRLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQY 332 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIA 406 ++ + + VDYAHT ++L+ +L+ I I + +I V GCGGDRD+ KRP M IA Sbjct: 333 FISDEKITAV-VDYAHTPDALKNVLETINNIRTKNEELITVVGCGGDRDKTKRPKMAHIA 391 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK----GNRIEAIRTAIEMLNKQDV 461 L+ I T DNPRSE PE I ++ G+ P +K +R +AI+TA +M + +D+ Sbjct: 392 STLSTKVIFTSDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDI 451 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKGHET + GE+ D ++E+L Sbjct: 452 ILIAGKGHETYQEI-KGERFDFDDYKTVQELL 482 >gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Bacteroides salanitronis DSM 18170] Length = 484 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 158/489 (32%), Positives = 253/489 (51%), Gaps = 49/489 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+++I +N+L + +R I + DSR + G +FVAI G + DGH +I Sbjct: 1 MKLEEIIK---AVTVNEL----IGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +AI GA IV + IR + + +T + A+ YG +++ Sbjct: 54 QKAIENGACGIVC------EQLPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLI 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 VTGT+GK+++A+ + ++ ++ G +++G ST+ ++ D + TTP PI L + L Sbjct: 108 GVTGTNGKTTIATLLYKMFRQFG---YKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++ +G + +E SSH + Q R+ G++ G FTN+ RDH+DYH+T + Y AK F Sbjct: 165 GRMADEGCKYAFMEVSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFF 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------ 288 + LPK + A+ DD K +++ N R+ + L+ +C K Sbjct: 225 DN-LPKSAFALTNLDDKNGKVMVQ---NTKARIAAYS-------LRTLCDFKGKVLEDGF 273 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + + ++ + F G F N L G +G S VL L L V GRF+ Sbjct: 274 DGMLLDINNREVNVRF--IGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDA 331 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406 + + RG VDYAHT ++L +L I + GR+I V G GG+RD+GKRP+M + A Sbjct: 332 L-RSRRGYTAIVDYAHTPDALVNVLNAIHEVLRGQGRVITVVGAGGNRDKGKRPLMAQEA 390 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDV 461 + +D I+T DNPR EDP+ I +++ G+ K +R EAIRTA + QDV Sbjct: 391 VKQSDKVIITSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDV 450 Query: 462 LVVAGKGHE 470 +++AGKGHE Sbjct: 451 VLIAGKGHE 459 >gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM 74] Length = 498 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 163/495 (32%), Positives = 258/495 (52%), Gaps = 54/495 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L+D+ YK P L S+ ++ ++ DSR G +F+A+ G DGH +I Sbjct: 7 MQLKDIFYK-IPLLATSGSM------NTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYI 59 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 AI QGA AI+ ++ A + + V N+ + + L A+ Y + + + + Sbjct: 60 ETAIQQGATAILC------EEIPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 VTGT+GK+SVA+ + ++ + G ++ G ST+ + D+ + TTP I + L Sbjct: 114 GVTGTNGKTSVATLLFRLFRALG---YRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLL 170 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + + G THV +E SSH + Q R+ G+ + G FTN+ DH+D+H T Y AK F Sbjct: 171 TKMLAHGCTHVFMEVSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFF 230 Query: 235 EELLPKESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK 288 ++ LP + A+ DD + + R + L+ ++GK + L + + ++ Sbjct: 231 DQ-LPASAFALTNVDDKRGLVMLQNTVARKETYSLQTLA-SFKGKILADSLFGLNMLIDE 288 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++V F L G+F YN L G I +G D VL L + PGRFE Sbjct: 289 REV-----------WFKLIGQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPGRFEQ 337 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-------RIIVVFGCGGDRDQGKRPI 401 V ++ + I VDYAHT ++L+ +L+ I + S +II V GCGG+RD KRPI Sbjct: 338 VVSDDKIVGI-VDYAHTPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPI 396 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG----NRIEAIRTAIEML 456 M IA L++ I+T DNPR+EDP I ++ G+ P +K +R EAIR A+E+ Sbjct: 397 MADIACRLSNRVILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELA 456 Query: 457 NKQDVLVVAGKGHET 471 D+++VAGKGHET Sbjct: 457 KPHDIILVAGKGHET 471 >gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 256 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/247 (50%), Positives = 161/247 (65%), Gaps = 13/247 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL FPEL QL P + I+ +SSDSRH+ G FVA+ G K DG FI Sbjct: 21 MKLRDLAGDQFPELEAQLE-GPAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A +GA + S Q A+I P+L V R+FLS+ A+R YG+ PE ++AV Sbjct: 78 VDAAGRGAAVAIAS-----QPVDASI----PVLAVKEPRRFLSIAAARFYGRQPETMVAV 128 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179 TGT+GK+SVASF +QI +G ++ IG T +S + LTTP P+ L K L+ L+ Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY AKMRLF+ LLP Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLP 248 Query: 240 KESPAII 246 K +PA+I Sbjct: 249 KGAPAVI 255 >gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus influenzae F3031] gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae F3031] Length = 488 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWVELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I +I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus Nc4] Length = 523 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 249/472 (52%), Gaps = 19/472 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--S 83 ++R+IN +S DSR + G +F A G ++ GH +I A+ +GA A+ L + Sbjct: 40 QDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAVAVAYDPIIPLSSVVHA 99 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 + P++ + + L + A R Y + + ++ VTGT+GK+SV+ F+ Q + Sbjct: 100 GLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNGKTSVSHFLAQALHQQE 159 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG + + ++LTTP + + + L+ + G + +E +SH L+Q R++ Sbjct: 160 APCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRYAVMEVTSHALEQGRVN 219 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ FTNL R+H+DYH Y AK RLF + P A+I DD + + A Sbjct: 220 GVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQ--PGLRHAVINVDDTAGEAFL--A 275 Query: 261 H-NAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316 H A V+S G L+ V +H +++ + ++++G + + + PL G F YN L Sbjct: 276 HLPAEVTVISYGLTNPQASLR-VNELHCDRRGIVMNIQGPWGEGELICPLLGRFNAYNLL 334 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + G+ L+ L ++ V GR E +G + + VDYAHT ++LE L ++ Sbjct: 335 AALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPLLVVDYAHTPDALEQALCSL 394 Query: 377 RT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R R+ VFGCGG+RD+GKRP+MG +A AD ++TDDNPR EDP +I EI+ Sbjct: 395 RAHLEPGARLWCVFGCGGNRDRGKRPLMGAVAERWADFVMLTDDNPRDEDPRQIIIEILS 454 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 G+ + +R EAI A+E+ +D++++AGKGHE V ++ S Sbjct: 455 GMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKGHEEYQQVGTEQRPFS 506 >gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 84-1] gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 182-1] gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 124-1] gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 78-1] gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 85-1] Length = 471 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 502 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 152/466 (32%), Positives = 237/466 (50%), Gaps = 25/466 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNTP 91 V+ DSR ++ G +F+A G+ DG +I +AIA GA A+ A + DF+ Sbjct: 30 VTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQVA 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V R+ A+ +YG+ E +++AVTGT+GK+SV+ ++ R +G Sbjct: 90 NLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPRRCAVIGTLG- 148 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + + TTP+ L + L+ + ++EASS G+ + RLDG ++ F Sbjct: 149 -AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVAVF 207 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH T AY AK RLF P+ A+ DD + +E+ A + +V+ Sbjct: 208 TNLTRDHLDYHATMAAYAQAKARLFA--WPRLRLAVSNLDDPFGRELA--ALSTATKVIG 263 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAG 320 Q + N ++ +++G F P L G + V N L A Sbjct: 264 YTQQAGADDRQGTIRAENIEE---TIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVAA 320 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I G+ V E +L PGR E +G ++ + VDYAHT ++LE L +R + Sbjct: 321 VLIDAGLTPKAVAERFAQLSSPPGRLEKIGGHNEP-LVIVDYAHTPDALESALMALRPVA 379 Query: 381 SGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + R ++V+FGCGGDRD+GKRP+M +A AD ++T DNPRSE+ I A+I+ G P Sbjct: 380 NARGAGLVVIFGCGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAP 439 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 + +R EAIR + + DV+++AGKGHE + + S Sbjct: 440 TALVIADRGEAIRRTLLAAHPADVVLIAGKGHEPYQEIAGVRRPFS 485 >gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 484 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 253/479 (52%), Gaps = 31/479 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I V+ DSR I+A +F+A+ G + DGH +I AI +GA A++ +D Sbjct: 21 KEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGAVAVLC------EDLPEVKA 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + V +T + + A+ YG+ + + + VTGT+GK+++A+ + + ++ G + Sbjct: 75 PHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIATLLYNLFRKLG---Y 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G ST+ ++ +D + TTP PI L LS + G +V +E SSH + Q R+ G Sbjct: 132 KCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECSSHAIAQKRIAG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + G FTNL RDH+DYH+T + Y +AK F+ LPK S AI ADD K M Sbjct: 192 LHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDS-LPKTSFAITNADD---KNGMYMVQ 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N V + + ++ H + + + ++G++ F G+F V N L G Sbjct: 248 NTKATVKTYSARSLADFKARIIECHF-EGMYLEIDGREVGVRF--IGKFNVSNLLAVYGA 304 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + + +L L L V GR E + + G VDYAHT ++LE +L I + + Sbjct: 305 SVMLQQQPENILLALSTLQSVSGRLEPI-YSPEGFTCIVDYAHTPDALENVLLAIHDVLN 363 Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G++I V G GG+RD+GKRP+M + A+ +D I+T DNPR EDP+ I ++ G+ Sbjct: 364 GKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVILTSDNPRFEDPQDILNDMKEGLNNA 423 Query: 440 IEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R EAIRTA + K DV++VAGKGHE + NG K D +++ EI Sbjct: 424 QLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKGHEDYQEI-NGVKHHFNDKEVLYEIF 481 >gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter sp. BAL39] Length = 485 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 160/511 (31%), Positives = 259/511 (50%), Gaps = 42/511 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+LQD++Y L+ S R++ + DSR + +F AI G DGH + Sbjct: 1 MQLQDVLYGITITSLVGNTS--------REVTALVFDSRKVVKDSVFFAIRGTMSDGHQY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116 I + GA ++ ++ R + V+N+ L A+ YG HP + Sbjct: 53 IDDTVEAGASVVICEVLPEIR------RELATYIQVENSSVALGQMAANFYG-HPSSKLK 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAK 172 ++ +TGT+GK+++A+ + ++ + G + +G ST+ + D + TTP PI L + Sbjct: 106 LIGITGTNGKTTIATLLFKLFRELG---YGVGLISTVQNHINDVVVPSTHTTPDPIALNE 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + G + +E SSH + QHR++G+ G F+N+ DH+D+H T Y AK Sbjct: 163 LLQSMVDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKA 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F+ +LP + A+ DD + VM + A + ++ F K I N Sbjct: 223 FFD-VLPANAFALTNLDDR-NGMVMLQNTKATKKTYALKQLADF----KAKIIENSFS-G 275 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + ++ D F L G F YN L G + +G + VL L L GRF++V + Sbjct: 276 LHLDIDQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSK 335 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + I VDYAHT ++++ +L I+ I G ++I + GCGGDRD+ KRP+M ++A D + Sbjct: 336 QQIIGI-VDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPVMAQVACDWS 394 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR+EDP+ I +E+ G+ ++ +R EAI+TA + D++V+A Sbjct: 395 DKVILTSDNPRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLA 454 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 GKGHE + NG K D +I+ E L LI Sbjct: 455 GKGHEKYQDI-NGVKYHFDDKEILTEQLNLI 484 >gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerolinea thermophila UNI-1] Length = 522 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 167/498 (33%), Positives = 256/498 (51%), Gaps = 53/498 (10%) Query: 6 LIYKDFPELINQLSIFPMQ--WR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 + + PELI L P+Q W + + ++ + R Q G+IFVA G + DGH F Sbjct: 4 FVRRTLPELIRHL---PIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTF 60 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENI 117 IP AI +G A+V +Q+ S + P L V N+R+ L+ ++ Y H + Sbjct: 61 IPHAIERGIVAVV-----GMQEISGL---SIPYLRVSNSREALAYLSAAFYNFPAHEMTV 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLA 171 + VTGT GK++ ++ + QI +G S+ G ST+++ D +TTP + Sbjct: 113 IGVTGTDGKTTTSNLIYQILLAAGHSA---GIVSTVNAVIGDEVVDTGFHVTTPEAPEVQ 169 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + LS + + G+THV +EA+SHGL+QHR+ G + G TN+ +H+DYH + +AY AK Sbjct: 170 RYLSRMRAAGLTHVVLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKG 229 Query: 232 RLFEEL-----LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVC 283 RLF L P +P A++ DD S E ++ RV +V Y + L+ Sbjct: 230 RLFTMLSETPEKPHGNPRLAVLNRDDQ-SYEYLQSL----VRVPAVSYGLAEGADLRAEN 284 Query: 284 AIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLH 340 + ++ + G+DF L GE+ V N L A A + +GIDS + + + Sbjct: 285 IRYEADRLRFDIVGRDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMS 344 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 VPGR E + I VD+AHT N+L+ L R IT GR+I VFG G RD+ KR Sbjct: 345 GVPGRMERIHMGQSFHAI-VDFAHTPNALKQALLTARQITRGRVIAVFGSAGLRDREKRR 403 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTA 452 +M +++ LADI+I T ++PR+E E I E+ G F +R +AIR A Sbjct: 404 LMAEVSAQLADISIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMA 463 Query: 453 IEMLNKQDVLVVAGKGHE 470 ++M D+++ GKGHE Sbjct: 464 VQMAKPDDLVIACGKGHE 481 >gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis IBL 4222] Length = 482 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 4 FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + + +I Sbjct: 61 ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + IG + I + + TTP + L + S + QGV +E SSH LD Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251 R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A++ +DD Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++E M+ + V++ G I K + T+ + + L G+F Sbjct: 235 VTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367 VYN L A + G+ ++ +++L VPGRFE V GG+ Y VDYAHT + Sbjct: 292 NVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPD 347 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407 Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I +++ G G + +R EAI AI + D++++AGKGHET I+ Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457 >gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum MolK2] Length = 514 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 242/485 (49%), Gaps = 32/485 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI GA A++ + + A +R Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ Y G ++ VTGT+GK+S + ++ Q R G Sbjct: 92 ----ILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + TTP I L ++L+ L G V++E SSHGL+Q R DG Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258 + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLTGLRA 264 Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314 A G + +G L+ ++ T V+G P+ G F V N Sbjct: 265 DIEAVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSN 324 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L+ Sbjct: 325 QLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTLR 383 Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G+ ++ +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEH 502 Query: 489 IREIL 493 +R L Sbjct: 503 VRLAL 507 >gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas albilineans GPE PC73] gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate ligase protein [Xanthomonas albilineans] Length = 494 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 232/461 (50%), Gaps = 31/461 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 RE +++ ++ DSR ++ G FVAI G G F+ QA A GA AI+ A Sbjct: 18 REVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAP-----AD 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGL 142 + ++ + V R + A +L+G HP ++ VTGT+GK+S+ + Q G Sbjct: 73 LPASADAIAVPGLRARMGAMADQLHG-HPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGT 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S IG + TTP + L L+ L G V++E SSH LDQ R+D Sbjct: 132 CSGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDA 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH+ AY AK RLF +P A++ DD + ++++ A Sbjct: 192 VHFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFA--MPGLRAAVVNLDDTFGRQLLH-AL 248 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312 + R + V +G+ + A+H + G FD + PL G F V Sbjct: 249 DPALRRIGVSSRGRDGATVRAEALH------LDARGIGFDLVVGTQRHALQSPLLGRFNV 302 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L AG A+ + + L +L + GR +G + VDYAHT ++LE Sbjct: 303 DNLLAVAGALYALDVPPVRIAATLAQLQPIRGRMNRLGGRDAQPLVVVDYAHTPDALEQA 362 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+++R GR++ VFGCGG+RD GKRP M IA L+D VTDDNPR ED E+I A+I Sbjct: 363 LQSLRDHAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVADI 422 Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + G G + R +AI AI M +D++++AGKGHE Sbjct: 423 LAGFDGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKGHE 463 >gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus G9241] Length = 491 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I D + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466 >gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella flexneri K-671] Length = 472 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 168/478 (35%), Positives = 244/478 (51%), Gaps = 29/478 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + R EA+ A+ + DV++VAGKGHE IV N S + R + GL Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGGL 470 >gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar sotto str. T04001] Length = 482 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 245/470 (52%), Gaps = 31/470 (6%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 4 FPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERP--- 60 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQIC 137 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + + +I Sbjct: 61 ------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIM 114 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + IG + I + + TTP + L + S + QGV +E SSH LD Sbjct: 115 RAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDL 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDA 251 R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A++ +DD Sbjct: 175 GRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDN 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++E M+ + V++ G I K + T+ + + L G+F Sbjct: 235 VTEEYMR---STAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKF 291 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367 VYN L A + G+ ++ +++L VPGRFE V GG+ Y VDYAHT + Sbjct: 292 NVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPD 347 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP Sbjct: 348 SLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAA 407 Query: 428 IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I +++ G G + +R EAI AI + D++++AGKGHET I+ Sbjct: 408 ILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 457 >gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 510 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 156/480 (32%), Positives = 244/480 (50%), Gaps = 28/480 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR Q G +F+A+ G++ G +A+A+GA A++ A ++ A + Sbjct: 31 LRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALARGAVAVLWEPAPGVE---APVDLG 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-QQICQRSGLSSF 145 P + V + L A R +G HP ++ VTGT GK+SV+ F+ Q + Q SG Sbjct: 88 VPCVAVPGLGQRLGEIADRFFG-HPSGAMKLIGVTGTDGKTSVSQFLAQTLYQESGRCGV 146 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + + + TTP + L + L+ L +GV + +E SSH L Q R++G L Sbjct: 147 IGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYTVMEVSSHALVQGRINGAALD 206 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TNL RDH+DYH + +AY AK RLF P AI+ DDA+ +++ Sbjct: 207 IAVLTNLSRDHLDYHDSMEAYAEAKARLFR--WPGLETAILNLDDAFGRKLAAELAEREV 264 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316 ++L G +++V + V +G F + P L G F V+N L Sbjct: 265 QILGYGLAAASGEIEQV----RGESVEYRPDGLAFSVVTPWGSGRLETGLLGAFNVHNLL 320 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + +G+ LE L + VPGR E + +G + VDYAHT +L +L+ + Sbjct: 321 AVLAALLQLGLSLTDALERLTHVRTVPGRMERF-SGGKGATLVVDYAHTPAALAQVLQAL 379 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR+ VFGCGG+RD GKRP+M + + AD ++T DNPR EDP+ I E++ G Sbjct: 380 RMHCEGRLWCVFGCGGNRDPGKRPLMARASEQFADRVVLTSDNPRHEDPQDIAREVMTGF 439 Query: 437 --PGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + ++ +R A+ A D+++VAGKGHETV IV + ++ S D D+ R ++ Sbjct: 440 ERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGKGHETVQIVGDEQRPFS-DRDLARRLV 498 >gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus aegyptius ATCC 11116] Length = 488 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I +I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 528 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 240/463 (51%), Gaps = 38/463 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DS G +FV + G G F +A+ GA A++ + +L + + TP+ Sbjct: 50 VSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGAL--IAHEVAPGTPV 107 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQRSGL 142 LV D+ R + ++ +Y HP L AVTGT+GK++ + F+ I C +G Sbjct: 108 LVHDDPRAVVGPLSAEVY-HHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVAGT 166 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++G S S R T +P+ L + ++ V S+EASSH + HRLDG+ Sbjct: 167 VELRVGERSVESP-----RTTVEAPV-LQRMMALAVEDRVGAASLEASSHAIVLHRLDGV 220 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL RDH+D+H+T + Y AK RLF + +I DD + + +A Sbjct: 221 VVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARR--GVICVDDQWGAALAAQAPI 278 Query: 263 AGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNAL 316 RV + Y G ++ V + T+ +G+ + PLPG V NA Sbjct: 279 EVDRVRA--YPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAA 336 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKN 375 +A + I G+ +A L H +PGR + + + R G VD+AHT ++++ LK Sbjct: 337 LALVMAIRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKA 396 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ +VTD+NPRSEDP IR I+ G Sbjct: 397 VRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDG 456 Query: 436 I----PGF--IEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHE 470 I PG +E+ R +A+R +E+ D ++V GKGHE Sbjct: 457 IRTVRPGLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKGHE 499 >gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda ATCC 23685] Length = 495 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 167/492 (33%), Positives = 246/492 (50%), Gaps = 20/492 (4%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ + Q ER + E++ DSR AG +FVA+VG+ DG FIPQAIAQG AI+ + Sbjct: 10 LAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIAEADG 69 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VAS 131 +D + P++ + + LS A R YG+ +++ + T +A Sbjct: 70 VAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTTTQLLAQ 129 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + Q + +R + +G + +N TT S + + L L+ +G T V++E SS Sbjct: 130 WAQLLGERGAVMG-TVGNGLLGQVYPSEN--TTGSAVDVQHMLRNLADEGATLVAMEVSS 186 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL Q+R+ + +A FTNL RDH+DYH Y AK RLF E II ADD Sbjct: 187 HGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEK--IINADDE 244 Query: 252 YSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + + + +A L+ + G+++ ++V + I L Sbjct: 245 VGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHSRLM 304 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GEF V N LVA +A+G + +L V GR E + + VDYAHT + Sbjct: 305 GEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKP-TVVVDYAHTPD 363 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L R G++ +FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+P Sbjct: 364 ALEKALLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRT 423 Query: 428 IRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G+ PG ++ R EA+ AI QDV++VAGKGHE +V N S Sbjct: 424 IINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKGHEDYQLVGNRRLDYSD 483 Query: 485 DCDIIREILGLI 496 + R +LG++ Sbjct: 484 RVTVAR-LLGVV 494 >gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Yersinia aldovae ATCC 35236] Length = 471 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 228/460 (49%), Gaps = 29/460 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG A++ + D S P++ + Sbjct: 4 DSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 N + LS A + Y P + L + G +G + + Q + Q S +G TS + Sbjct: 64 RNLNQHLSTLAGQFY-HQPGDALRLVGVTGTNGKTTTTQLLAQWSQ----ALGDTSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADD + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLSQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G++G ++ V N + L G F V N LVA + Sbjct: 237 MEGNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGL---LDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + R EA+ +AI + DV+++AGKGHE +V N Sbjct: 413 HAQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGN 452 >gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-3C] Length = 487 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 163/486 (33%), Positives = 260/486 (53%), Gaps = 39/486 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ V DSR + A +FVA G + +GH+FI AI +GA +V +D Sbjct: 22 KEVQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGATVVVC------EDLPGLTH 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + +VV N+++ L + A+ + HP +++ VTGT+GK++V S + + ++G S Sbjct: 76 AEVTYVVVPNSQEALGVMAANWF-DHPSKKLSLIGVTGTNGKTTVTSLLYALFTKAGYPS 134 Query: 145 FQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G STI A + TTP + L + S+G++H +E SSHG+ Q R+ Sbjct: 135 ---GLISTIKILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVSSHGIAQMRIK 191 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+ FTNL +DH+DYH+T Y + K LF+ L + A++ +DD K + Sbjct: 192 GLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGL-STTAFALVNSDD---KNGLFML 247 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N + +S G +G + K + N+ Q + I + + L G+F YN L Sbjct: 248 QNTKAKKMSYGLKG--VADFKAQILENQFSGQLLKIDQQ----EVWTTLLGQFNAYNILA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +G+++ VL+H+ L V GRF++ + ++ I VDYAHT ++L+ IL+ I Sbjct: 302 IYATATLLGLNTLEVLQHISTLENVAGRFQYFISKNQITAI-VDYAHTPDALDNILETIG 360 Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + ++I V GCGGDRDQGKRP+MG IA + +D I+T DNPRSE P I ++ G Sbjct: 361 QIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVILTSDNPRSETPIAILEQMEAG 420 Query: 436 I-PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + P I+K NR +AI+TA M +D++++AGKGHE + G K D +I++ Sbjct: 421 VSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKGHEKYQDI-KGVKTPFDDYEIVK 479 Query: 491 EILGLI 496 L L+ Sbjct: 480 NHLDLL 485 >gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 198-1] Length = 471 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLSDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G + +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLSDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b] Length = 495 Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 240/482 (49%), Gaps = 20/482 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++ DSR AG +F+A+ G+ DG FIPQAIAQG A++ + D Sbjct: 20 RPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEAIDGDIREI 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + P L + G +G + + Q I Q + L Sbjct: 80 HGVPVIYLAQLPQRLSALAGRFY-QQPAEKLKLIGVTGTNGKTTTTQLIAQWANLLGETG 138 Query: 148 GPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 T+ + A +N TT S + + L L QG T ++E SSHGL QHR+ Sbjct: 139 AVMGTVGNGLYGQLVATEN--TTGSAVDVQHVLHDLVGQGATLAAMEVSSHGLVQHRVAA 196 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + A FTNL RDH+DYH Q+Y AK LF E + AII ADD + + + Sbjct: 197 LPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE--HQVGAAIINADDEVGRRWLAKLP 254 Query: 262 NAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +A L G G+++ V + S D +F L G F V N L+ Sbjct: 255 DAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGEFDSRLMGAFNVSNLLL 314 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +++ ++ +L V GR E + + VDYAHT ++LE L+ R Sbjct: 315 ALATLLSLDYPLDALVSSATQLLPVTGRMEVFSAPDKP-TVVVDYAHTPDALEKALEAAR 373 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G++ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP+ I +I+ G+ Sbjct: 374 LHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPQAIVNDILTGLL 433 Query: 437 -PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 PG R +A+ AI +D+++VAGKGHE IV N S D D + +LG Sbjct: 434 DPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKGHEDYQIVGNRRLDYS-DRDTVARLLG 492 Query: 495 LI 496 ++ Sbjct: 493 VM 494 >gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter marianensis DSM 12885] Length = 503 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 176/473 (37%), Positives = 247/473 (52%), Gaps = 37/473 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I ++ DSR ++ G++FVAI G + DGH FI +A+A+GA A+V A +++ Sbjct: 21 DRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQEAVARGAAAVVGERAPAVE------ 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 P + V ++R L L AS YG HP L + G +G + + V+ + + +G Sbjct: 75 --GVPYVQVPSSRTALGLLASAFYG-HPSARLVLVGVTGTNGKTTTTHLVRWVLEAAGHP 131 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + I + TTP L K L+ + G+THV +E SSH L R+ G Sbjct: 132 TGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVMEVSSHALTLQRVAGC 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYADDAYS 253 G FTNL +DH+D+H + + Y AK RLF L E P A+I ADD + Sbjct: 192 AFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGTVKPGPKAAVINADDPWG 251 Query: 254 KEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R+ V++ G Q + + V + + + L G F V Sbjct: 252 TFMADRSS---APVITYGIRQAADVTARDVVVEPGGVRFVLGTRDGEVPVRLRLTGRFNV 308 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLE 370 YNAL AAG +A+GID A V LE L VPGR E + RG + VDYAHT + LE Sbjct: 309 YNALAAAGAGLALGIDPATVARGLESLPAVPGRLERI---DRGQPFTVLVDYAHTPDGLE 365 Query: 371 MILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L +R + GR++ VFGCGGDRD+GKRP MG IA LAD ++T DNPRSEDPE I Sbjct: 366 NVLSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAARLADYTVLTSDNPRSEDPEAII 425 Query: 430 AEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +I G +PG + R AIR +E+ DV+V+AGKGHE I + Sbjct: 426 DDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVVIAGKGHEDYQIFAD 478 >gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arsenophonus nasoniae] Length = 475 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 245/475 (51%), Gaps = 39/475 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E++ DSR + AG +F+A+ G+++DG +I QAIAQG AI+ + + + Sbjct: 2 LREMTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHG 61 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ +++ LSL A Y +HP L + G +G + + Q I Q + +G Sbjct: 62 VPVIYINDLNNQLSLLAGEFY-QHPAAKLRLIGVTGTNGKTTTTQLIAQWAK----GLGE 116 Query: 150 TSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S + + L TT S + + L L + T V++E SSHGL Q R+ Sbjct: 117 VSAVMGTVGNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAA 176 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I A FTNL RDH+DYH Q Y AK LF K II DD + +++ Sbjct: 177 IPFTAAVFTNLSRDHLDYHGDMQNYAAAKWLLFST--HKSDKQIINVDDETGLQWLEKLP 234 Query: 262 NAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVY 313 A C V + +QG ++ +++V ++ + TI S GK PL G F V Sbjct: 235 QA-CAVSMENRIPTDWQGAWMLVEQVD--YHDRGATIHFNSTWGKG-SLKSPLMGAFNVN 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N ++A + +G V++ + V GR E + R + VDYAHT ++LE L Sbjct: 291 NVMLAMATLLMMGYPFEAVIKSSHAIQPVCGRMEVFTSPGRP-TVVVDYAHTPDALEKAL 349 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R GR+ VFGCGGDRD+GKR +MG +A ADI +VTDDNPRSE+P+ I +I Sbjct: 350 SALRLHCRGRLWCVFGCGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDI- 408 Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + GF++ G R+EA+ +AI N DV+++AGKGHE I+ G++++ Sbjct: 409 --LSGFLDAGRAMPIVGRVEAVTSAIMQANADDVILIAGKGHEDYQII--GDRRL 459 >gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter heparinus DSM 2366] gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM 2366] Length = 485 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 158/509 (31%), Positives = 261/509 (51%), Gaps = 38/509 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+LQD++Y + +Q+ + RK++ + DSR + F AI G DGH +I Sbjct: 1 MQLQDILYG--VTITDQIGV-----TNRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 ++ GA ++ + A I + + V N+ L A+ YG E + Sbjct: 54 AATVSAGAGVVIC------EVLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLT 107 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 +TGT+GK+++A+ + ++ + G +++G ST+ + D + TTP P+ L L Sbjct: 108 GITGTNGKTTIATLLFKLFRALG---YKVGLISTVENHINDEVIPATHTTPDPLALNALL 164 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G + +E SSH + QHR++G+ G F+N+ DH+D+H+T Y AK F Sbjct: 165 QDMVDAGCDYCFMEVSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFF 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L P + A+ DD + VM + A + ++ F K I N + + Sbjct: 225 DAL-PASAFALTNLDDK-NGMVMLQNTRAAKKTYALKQLADF----KAKVIENSFK-GLH 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ D D F L G F YN L G + +G + VL L L GRF+++ T+S+ Sbjct: 278 LDIDDADVFFKLVGSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYI-TSSQ 336 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 VDYAHT ++++ +L I+ I G ++I + GCGGDRD+ KRPIM ++A D +D Sbjct: 337 HIIGIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPIMAQVACDWSDK 396 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGK 467 I+T DNPR+E+P+ I E+ G+ ++ +R EAI+TA + D++++AGK Sbjct: 397 VILTSDNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGK 456 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496 GHE + NG + D +I+ E L LI Sbjct: 457 GHEKYQEI-NGVRYHFDDKEILTEQLNLI 484 >gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus Q1] gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 491 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466 >gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552] Length = 454 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 242/477 (50%), Gaps = 45/477 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTP 91 + +DSR ++ G F+AI DGH +I QAIA GA I+ YS++ Sbjct: 5 LKTDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEHGNYSVE----------- 53 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V+NTRK+L+ + + Y ++I + VTGT+GK++ + Q+ +G Sbjct: 54 TVIVENTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGT 113 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + ++ TTP L L + GV + +E SSH L + R+ G++ + Sbjct: 114 VGFYYGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVA 173 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH+T + Y NAK +LFE+ AII DD + + M +N Sbjct: 174 FTNLTQDHLDYHKTLENYANAKRKLFEKT-RNNKIAIINGDDIHHQHFMLEGNNN----- 227 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAA 319 I + + I N V S G +FDF + + G + +YN L A Sbjct: 228 --------IVIDRDVKIEN---VDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTAL 276 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L +G +L EKL GR E + N+ I+VDYAHT +++E +LK+ + Sbjct: 277 LLVNKLGFKIEDILLLNEKLKAPAGRMELIKYNTNS--IFVDYAHTPDAVENVLKSAQEF 334 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 G+II + GCGG+RD KRPIMGKIA+D +D I T DNPR E+PE I +I + Sbjct: 335 KKGKIITIIGCGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISD 394 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 F R +AI ++ML++ D+L++ GKGHE +G++ S ++++ I G Sbjct: 395 NFEIIVERQDAIYKGVKMLDENDILMILGKGHENYQETKDGKRHFSDQEEVLKCIDG 451 >gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Congregibacter litoralis KT71] Length = 495 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 250/466 (53%), Gaps = 21/466 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR++Q G +FVA+ G DG ++ QA A GA A +V +D P +V+ Sbjct: 38 DSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALV------EDELPGEEPPLPCVVI 91 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 R L A R Y + P ++ AVTGT+GK++V+ Q+ + +G IG + Sbjct: 92 PGLRHKLCEIAGRYY-RDPSRQMHVAAVTGTNGKTTVSQLFAQLLRSAGYDCGVIGTLGA 150 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++++ QD+ TTP I + + L+ + Q V VS+E SSH LDQ R++G+ + + FTN Sbjct: 151 SLTAGVQDSVHTTPDSIAMQEILASWAGQAVPFVSMEVSSHALDQGRVNGLDIDSAIFTN 210 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH ++Y AK RLF AI+ +DD +S +V+ + G VL G Sbjct: 211 LTRDHLDYHGDMESYGAAKARLFA--FESLRTAILNSDDPFS-DVLAGRMSLGVAVLRYG 267 Query: 272 YQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + L + Q+ + + PL G+F N L A + G+ Sbjct: 268 LNDASADVRLSNLRLHSAGMQMRLESPWGNGTLNCPLLGKFNAVNLLAALTAALQAGVPF 327 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 V+ E L VPGR E + ++ G + VDYAHT ++L +L +R GR+I VFG Sbjct: 328 DAVMTAAESLQPVPGRMEPI-HSAAGPLVVVDYAHTPDALRHVLIALREQCKGRLIAVFG 386 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEA 448 CGGDRD+GKRP+M + +AD A++T DNPRSEDP I A+I + G + +R +A Sbjct: 387 CGGDRDKGKRPLMAEAVAAIADRAVITSDNPRSEDPLAIIADIEAAMAGEYHVCADRGDA 446 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493 I AIE +D +++AGKGHE I+ G+++ + D + +++L Sbjct: 447 IAMAIESAAPEDCVLIAGKGHEDYQII--GDQRFTFSDSAVAQQVL 490 >gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 491 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466 >gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 145-7] Length = 471 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 119-7] gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 117-3] Length = 471 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 491 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + S + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G I K + T+ + + Sbjct: 237 VLNNDDAVTPEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ V++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++ G G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466 >gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95] Length = 500 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 151/482 (31%), Positives = 258/482 (53%), Gaps = 30/482 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ +S +++ IF+A G++ DGH FI A +GA I+ QD I +N Sbjct: 28 IADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGASLIIA------QD-EEKIPTN 80 Query: 90 TPI--LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++V++ +K + + +L+ P++ IL VTGT+GKS+ S V I Q+S S Sbjct: 81 DSLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVSLVHHILQKSDKDST 140 Query: 146 QIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 I ST+ +D + TTPS + L+K L + +++E SSH + Q R++ Sbjct: 141 LI---STVEIKIKDEVVKEPYNTTPSILELSKILKNSKENNIEFINMEVSSHAIHQRRIE 197 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+K SFTN+ RDH+DYH+ + Y + K+ L L E +I D + +K Sbjct: 198 GVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMN-YLKDEGKIVINLDRLNKDDFVK-- 254 Query: 261 HNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 +G V++ G++ F+ + + + E K ++ L G+F VYN A Sbjct: 255 --SGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRSHLIGKFNVYNITNA 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + G++ ++ + V GRF+ V G+ S G +D+AHT ++L +LK Sbjct: 313 FVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDFAHTPDALNEVLKTAS 372 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +IT GRII VFG GG+ D+GKR +MG++ + +D+ ++T+D+P+ EDP++I ++ GI Sbjct: 373 SITEGRIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTNDDPKDEDPDQIIEDVSKGID 432 Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 FI +R AI TA+ NK D++++AG+GHE + NG+K D ++ ++++ Sbjct: 433 QDKHFIVIPDRETAIDTALRFANKGDIVIIAGRGHEKYQLFANGKKVKFNDYEVTKKLID 492 Query: 495 LI 496 I Sbjct: 493 KI 494 >gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp. PRwf-1] gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter sp. PRwf-1] Length = 569 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 210/386 (54%), Gaps = 33/386 (8%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSP 167 ++AVTGT+GK++++ + Q+CQ S ++ Q S + A + RL TT Sbjct: 155 QVIAVTGTNGKTTISQLMAQLCQFSEVAQLQ---NSAVMGTAGNGRLDSLVQASHTTGDA 211 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + + L + +GV +++EASSHGLDQ RL G+ + +TNL RDH+DYH Q Y Sbjct: 212 LAVQGFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYA 271 Query: 228 NAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CA 284 AK RLF++ P+ + A+I ADD ++ +++ A N+G V QG FI + A Sbjct: 272 QAKARLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNA 331 Query: 285 IHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + S++G + PL G F V N L A IA+GI+ + Sbjct: 332 YFIAKTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPAL 391 Query: 336 LEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 +++LH GR + V + +G G VDYAHT ++L +L ++++ SG + +FGC Sbjct: 392 VKQLHGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGC 451 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNR 445 GGDRD+GKRP+M + L AD ++T DNPRSEDP+ I ++ G+ +R Sbjct: 452 GGDRDKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIADR 511 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHET 471 +AI A+E D++V+AGKGHET Sbjct: 512 KQAIEYAVEHAAADDIVVIAGKGHET 537 >gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 495 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 166/478 (34%), Positives = 247/478 (51%), Gaps = 53/478 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ V DSR I+ G +F+ I G DGH F +A+ GA A+VV + Sbjct: 22 EVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVERRLDV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P ++V TR ++LFA+ YG H I+ VTGT+GK++ ++QI + G + Sbjct: 73 NVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTYLIEQILRDQGFITGL 132 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G I S TT + + K L+ + + + +E SSH LD R+ GI Sbjct: 133 MGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVSSHALDFGRVKGIPFR 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMK 258 +G FTNL +DH+DYH+T Y AK +LF + + S AI+ DD S E + Sbjct: 193 SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQRSYAILNVDDEAS-ETFQ 251 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGE 309 R +A V++ G ++K C + + I+ EG +F + L G+ Sbjct: 252 RLTSA--EVITYG-------IEKECDVR-ASNIRITAEGTEFTLTTFEGTENIRMKLVGK 301 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYNAL A +A GI + + L ++ VPGR E V + + + VDYAHT + L Sbjct: 302 FNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV-SEGQDYLVLVDYAHTPDGL 360 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L ++ G + VFGCGGDRD+ KRP+MGK+ +D VT DNPR+EDP I Sbjct: 361 ENALSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYSDHLFVTSDNPRTEDPAAIL 420 Query: 430 AEIIHGIPGFIEKG---NRIE-------AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +I +PG +E G +R E AI+ AIE+ + +DV+++AGKGHET + N Sbjct: 421 EDI---VPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVLIAGKGHETYQDIMN 475 >gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium wasabiae WPP163] gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae WPP163] Length = 495 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 167/488 (34%), Positives = 247/488 (50%), Gaps = 30/488 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + E++ DSR AG +FVAIVG+K DG +IPQAIAQG AIV + D + Sbjct: 19 ELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGVAAIVAEAEGETADGTVRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A R Y + P L + G +G + + Q + Q S Sbjct: 79 MHGVPVIYLSNLNQRLSALAGRFY-QQPAEKLQLIGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + + LS L QG T ++E SSHGL Q+R Sbjct: 134 LGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQNR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH ++Y AK LF E + II ADD + Sbjct: 194 VAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAE--HRVGQMIINADDEVGLRWLA 251 Query: 259 RAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A ++ G +G+++ ++ N + + L G F V N Sbjct: 252 KLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A +++G ++ +L V GR E + + VDYAHT ++LE L+ Sbjct: 312 MLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALE 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I +I+ Sbjct: 371 AARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVTDILS 430 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G R EA+ +AI + DV+++AGKGHE +V N S + Sbjct: 431 GL---LDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKGHEDYQLVGNQRLDYSDRITV 487 Query: 489 IREILGLI 496 R +LG+I Sbjct: 488 AR-LLGVI 494 >gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Teredinibacter turnerae T7901] Length = 509 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 238/474 (50%), Gaps = 16/474 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S DSR I G +F A+ G+ DG FI AI++GA A+V ++ DFS ++ + Sbjct: 32 EITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDF-DFS-SVPN 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+++V N + LSL A Y HP ++ VTGT+GK++ + Q+ + G + Sbjct: 90 DIPLVLVKNLGRTLSLIAGNFY-DHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAA 148 Query: 146 QIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG S QD LTTP I + L+ L + G T V++E SSH L+Q R+D + Sbjct: 149 SIGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGATFVAMEVSSHALEQGRVDAVN 208 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTN+ RDH+DYH T + Y AK RLF A+I DD+ S+ + + Sbjct: 209 FEGAVFTNISRDHLDYHGTFEHYIAAKSRLF--TFDALRFAVINGDDSASRALSAASTAE 266 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L G + K + IS + + L G F + N L Sbjct: 267 S-SFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANIQSCLIGNFNILNLLAVITTAC 325 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G V E ++ L GR + + + + VDYAHT ++LE L +R + Sbjct: 326 AAGYSLPAVAEQVQHLQPARGRMQRIVVDGGDVTVCVDYAHTPDALEKALLALRAQAAND 385 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442 + VVFGCGGDRD+GKR MG+IA + AD +VT DNPR+E P I +++ GIP ++ Sbjct: 386 VWVVFGCGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRTETPACIIDDVLSGIPASDKRV 445 Query: 443 ---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI AI D +++AGKGHE IV ++ DC++ + L Sbjct: 446 TNFEDRSAAIEFAILQAKSGDTVLIAGKGHEDYQIVGTAKRHFD-DCEVSSQCL 498 >gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus curdlanolyticus YK9] Length = 495 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 175/493 (35%), Positives = 253/493 (51%), Gaps = 57/493 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +++DSR +Q G +F + G K DGH F A + GA A+VV + Sbjct: 22 QITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGAAALVVERKLDVA-------- 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L+V ++R +++ + R Y HP ++ VTGT+GK++ +++I +G S+ Sbjct: 74 -IPQLIVKDSRLAMAIISDRYY-DHPSQKLRLIGVTGTNGKTTTTYLIERILSDAGQSAG 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG TI + N L TTP + L + L+ ++ GV ++E SSH LDQ R G Sbjct: 132 VIG---TIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAMEVSSHALDQGRTWG 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254 + G FTNL +DH+DYH T + Y AK LF L + S A++ ADD+ S Sbjct: 189 CRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAERSYAVLNADDSASD 248 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFP 305 A+ A +L+ G + A + I+ G F D Sbjct: 249 LF---ANAAAVEILTYGIDRE--------ADVRASDIRITSRGTTFRLETFRGGADISIR 297 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G+F VYNAL A + + GI + + LE L VPGR E V I VDYAHT Sbjct: 298 MVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQPYAVI-VDYAHT 356 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE +L+ ++ GRII VFGCGGDRD+ KRPIMG+IA ADI ++T DNPRSE+P Sbjct: 357 PDGLENVLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSDNPRSENP 416 Query: 426 EKIRAEI-----IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I ++ GIP ++ +R AI A+EM + DV+++AGKGHET I+ G Sbjct: 417 HAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAGKGHETYQII--G 474 Query: 479 EKKMSVDCDIIRE 491 K D ++ E Sbjct: 475 PKTFDFDDRLVAE 487 >gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 508 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 170/489 (34%), Positives = 247/489 (50%), Gaps = 52/489 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 E++SDSR I G +FVA G++ DG +I AI +GA+A++ +A D + Sbjct: 24 ELASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEWDVAH--- 80 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L +D+ ++ A+ Y HP+ +A+TGT+GK+S A ++ R G + IG Sbjct: 81 -LAIDDLKEHAGEIAAAYY-AHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIG 138 Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 T + F TTP + L ++L +S+ G T +++EASS GL Q RL G Sbjct: 139 -TLGVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTN RDH+DYH AY AK LF+ P A+I DDA +++R Sbjct: 198 MHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFD--WPGLQHAVINLDDAMGVRLVQRLQ 255 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEGK--DFDFLFPLPGEF 310 + R VG G + KK+ I N+ +E + L G+F Sbjct: 256 S---RQADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQF 312 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSN 367 V N L G+ +A GI + +E L VPGR + +G GG + +DYAHT + Sbjct: 313 NVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQLG----GGEAPLVVIDYAHTPD 368 Query: 368 SLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R++ + G + VFGCGGDRD GKRP MGK+++ AD +VT DNPR+E+ Sbjct: 369 ALEKTLATLRSVANDRGGELWCVFGCGGDRDPGKRPQMGKVSM-AADHIVVTTDNPRNEE 427 Query: 425 PEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P I +I+ GI P IE +R AI A +QDV+++AGKGHE V G Sbjct: 428 PANIIGDIVAGITAPKNAPQIIE--DRASAILWAGRHAARQDVILLAGKGHEAYQEV-KG 484 Query: 479 EKKMSVDCD 487 K +D D Sbjct: 485 RKLPFLDAD 493 >gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus H3081.97] gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 491 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVVD----GGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466 >gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis ATCC BAA-548] Length = 491 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 158/475 (33%), Positives = 243/475 (51%), Gaps = 28/475 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V +DSR + G IFVAI G DGH FI +A A GA+ IV L D+ + T Sbjct: 26 QVRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIV--HERELTDY---LEKPTY 80 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I V D++R + L R + P+ ++ VTGT+GK++ A V+ I + +G Sbjct: 81 IRVTDSSRAYARLV--REFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAG------E 132 Query: 149 PTSTISSFA-QDNRLTTPSPIYLAKA------LSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P IS+ +D ++T P+ +A L+ + G+ ++E SSH L Q R++G Sbjct: 133 PCGLISTVEYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQGRING 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL DH+DYH + Y+ AK F LL + A+I DD + K + + Sbjct: 193 ARFRTAIFTNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLARDIS 252 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + ++ + V + ++ E + FD L G ++N A Sbjct: 253 GRQQVTFGMTPAADWV-ISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILA 311 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + G+ + L + VPGR E + G YVDYAHT ++L+ +L+ +R IT Sbjct: 312 ALDYGLKPEAISHALNRPIRVPGRLEPFRASPEGPVFYVDYAHTDDALKNVLEILRKITK 371 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 G++I VFG GGDRD+ KRP MGK A AD I+T DNPRSE+P+KI EI GIP Sbjct: 372 GKLIAVFGAGGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGTS 431 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 F + +R +A+R A+ + DV+++AGKGHE + G ++ D +I+ ++ Sbjct: 432 FETEPDRAQALRRAVAVARPGDVVLIAGKGHENYQEI-QGVRRSLDDRKLIKTLI 485 >gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lentisphaera araneosa HTCC2155] Length = 472 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 252/486 (51%), Gaps = 58/486 (11%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 DF E++ +L+ I SSDSR I+ G+ F + G ++DG +I +A+A+GA Sbjct: 6 DFLEMLEELNPRLSGVLPELIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEALAKGAR 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 ++ ++F + P + +D+ RK +L A + EN I+AVTGT+GKS Sbjct: 66 LLLC------EEF---LDVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNGKS 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S A +Q + G S+ IG + + + LTTP L + ++ G +V Sbjct: 117 STAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEYVV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +EASSHGLDQ RL G+ A FTNL DH+ YH + + YF+AK LF++ K I+ Sbjct: 177 LEASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSK--IKIV 234 Query: 247 YADDAYSK-------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 +DDAY K +V + ++ C+VL Q ++ +EG Sbjct: 235 NSDDAYGKRLRDSQTKVFSQDPDSDCQVL---------------------QNSVKLEGT- 272 Query: 300 FDFLFP-LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGG 356 + L P L GE+ +YNA A L I S + + +EK +PGR E N+ G Sbjct: 273 -ECLLPQLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNN-GA 330 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 ++ VD+AH +LE ++ +R ++ +VFGCGGDRD +R MG+ A DLAD I+T Sbjct: 331 QVIVDFAHAQEALEKVICELRKNCREKLSIVFGCGGDRDPARRYGMGE-ASDLADEVILT 389 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKGHET 471 +DNPRSEDP+ +II+ I +K R+ +AIR A E L D L++AGKGHE Sbjct: 390 NDNPRSEDPQ----QIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKGHEE 445 Query: 472 VHIVTN 477 I + Sbjct: 446 KQIFKD 451 >gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 491 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 249/477 (52%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 + I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERS---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466 >gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 492 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 247/462 (53%), Gaps = 33/462 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + I+ ++ +S+ ++ +F A+ G K DGH FI +AI +GA+A+V + + F + Sbjct: 19 KNIDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGH----FMPSEY 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ + V+++R LS +S+ YG E I+ +TGT+GK++ + +++I +R + Sbjct: 75 ADVTWIGVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKKTG 134 Query: 146 QIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + + + TTP + L + +GV +V E SSH L R+D K Sbjct: 135 VIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKRVDYTKF 194 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKE 255 FTNL RDH+D+H+ + YFNAK RLF ELL E A+I DD Y +K+ Sbjct: 195 DIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRLAEQLNTKK 254 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + N + Y+ F + I ++++ + L +P +YN Sbjct: 255 ITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTH------LLGIP---NIYNV 305 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A + +A+ I ++ + H GRFE V + ++VDYAH+ ++LE +L + Sbjct: 306 ISAVSVAVALNIPFDIIESAISDAHSPDGRFERVD-EGQDFLVFVDYAHSPDALERLLIS 364 Query: 376 IRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +R + +G+I+ VFGCGG+RD+GKRP MGKIA +L+D I+T DNPR E+P +I Sbjct: 365 VRKLKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSDYVILTSDNPRWEEPREIIK 424 Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EI GI +I +R ++ ++ K D+L+VAGKGHE Sbjct: 425 EIEEGILKDNYIVVPDRTMSLYIGTKICKKGDILIVAGKGHE 466 >gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum DSM 5476] Length = 479 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 168/505 (33%), Positives = 248/505 (49%), Gaps = 59/505 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ KD + + + I +VS DSR + +F I G + DGH F Sbjct: 1 MKLSELL-KDIE--------YTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFA 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+A+G I+ L N +LV D F + A+ YG + + + Sbjct: 52 QAALAKGVPCILCERDLGL---------NNQLLVQDTHFAFAKMCAN-FYGNPAKKLKLV 101 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKAL 174 VTGT+GK++V S ++++ +GL ++G TI + D + TTP K L Sbjct: 102 GVTGTNGKTTVTSIIKRV--LAGLGC-KVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKIL 158 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S + G +V +E SSH LDQ RL +FTNL +DH+DYH+ + YF AK +LF Sbjct: 159 SDMVEAGCEYVIIEVSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLF 218 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 +I DD+Y + + AH C + + + C N + + Sbjct: 219 HMC----DKGVICIDDSYGRRLALEAH---CSLRTFSAEDA----SASCFARN---IEMD 264 Query: 295 VEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + G F+ + F PG F V NAL AA +C+ +GI V+ + + GR Sbjct: 265 ITGVRFEMVTGAVISRMQFGTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKGR 324 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGK 404 E + T R + DYAHT + L IL +I GR + VFGCGGDRD+ KRPIMG+ Sbjct: 325 SEIIPTG-RDFTVLCDYAHTPDGLVNILSSINEYKGKGRAVAVFGCGGDRDRKKRPIMGE 383 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQD 460 + AD+ IVT DNPR+EDP+ I EI+ GI F+ NR EAI A++ D Sbjct: 384 VVARNADLLIVTSDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGD 443 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVD 485 ++++AGKGHE ++ G +K+ D Sbjct: 444 IILLAGKGHEDYQVL--GTQKVHFD 466 >gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus DSM 14838] Length = 483 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 247/474 (52%), Gaps = 45/474 (9%) Query: 19 SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 +I P+Q E +I V+ DSR +QAG +F+A+ G + DGH++IP AI +GA A++ Sbjct: 9 AIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGAVAVLC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +D + + V ++ + A+ Y ++ VTGT+GK+++A+ + Sbjct: 67 ----EDVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP PI L L ++ G +V +E Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQMADSGCKYVFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH +DQ R+ G++ G FTNL RDH+DYH+T + Y AK + F++ +PK + ++ D Sbjct: 180 SSHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKNAFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ + + R LS ++GK + H + + N ++ + G+ Sbjct: 239 DKNGLVMTQNTRSKVYTYSLRSLS-DFKGKILESHFEGMLLDFNNHELAVHFIGR----- 292 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 F N L G + +G VL L L V GRF+ V + +G VDYA Sbjct: 293 ------FNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAV-RSPKGITAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + G++I V G GG+RD+GKRPIM K A +D I+T DNPR Sbjct: 346 HTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 406 FEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKGHE 459 >gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri 2930-71] Length = 471 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 164/460 (35%), Positives = 238/460 (51%), Gaps = 29/460 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + R EA+ A+ + DV++VAGKGHE IV N Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 452 >gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella dysenteriae 155-74] Length = 471 Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 200-1] Length = 471 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 168/476 (35%), Positives = 245/476 (51%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS++ Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSSVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ G+ + Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 7P49H1] Length = 488 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ V TGT+GK+ Sbjct: 59 AVVSETELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +L+ G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Serratia odorifera 4Rx13] Length = 471 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 241/479 (50%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG A++ + +D + T P++ + Sbjct: 4 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P L + G +G + + Q + Q S L +G T + Sbjct: 64 SQLNQRLSALAGRFY-HQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----LGETGAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L +G T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH Y AK LF + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMANYEAAKWSLFAG--HEVGQAIINADDEVGQRWLSKLPDAVAVT 236 Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L +G G+++ V N V S D + L G F V N L+A + Sbjct: 237 MQDNLQLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G ++E +L V GR E + + VDYAHT ++LE L+ R G+ Sbjct: 297 SLGYPLDKLVETGNQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALEAARLHCQGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA AD +VTDDNPR+E+P+ I A+I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADI---LTGLLDAG 412 Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ +AI +QDV++VAGKGHE +V N S D + +LG+I Sbjct: 413 RALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470 >gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrio angustum S14] Length = 505 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 243/473 (51%), Gaps = 25/473 (5%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P++ E +I+ ++ DSR + AG +F A+ G+ DG FI AI GA AI+ + Sbjct: 23 LPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIAN 82 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQIC 137 + ++ I+ + + LS A R + HP+ LA VTGT+GK++++ + Q Sbjct: 83 EGDIALKDGVYIIYLQDLNHKLSAIAGRFF-DHPDQKLALYAVTGTNGKTTISQLLAQWA 141 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +G T + + TT S I + + L+ L QG ++E SSHGL Q Sbjct: 142 NLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGLVQ 201 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + A FTNL RDH+DYH Q Y +AK LF E + AII ADDA Sbjct: 202 GRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTE--HQSGIAIINADDAVGASW 259 Query: 257 MKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLP 307 + NA + V + G + L + Q VTI + GK F PL Sbjct: 260 LIDIPNAVAVAIDPQAVVNHTG--LKLWATDVQFSTQGVTIEFDSSWGQGK---FTAPLV 314 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F N L+A +A A +LE KL V GR E V ++ + VDYAHT + Sbjct: 315 GSFNATNLLLALATLLATNHPMADLLEKAPKLQAVIGRME-VFQDTDKAMMVVDYAHTPD 373 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L+ +R G++ +FGCGGDRD GKRP+M ++A LAD I+TDDNPRSEDP+ Sbjct: 374 ALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIILTDDNPRSEDPKD 433 Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I +++ G+ I +R A R A+ + QD+++VAGKGHE I+ + Sbjct: 434 IVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKGHEDYQILAD 486 >gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum UW551] gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum IPO1609] Length = 514 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 241/485 (49%), Gaps = 32/485 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI GA A++ + + A +R Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ Y G + VTGT+GK+S + ++ Q R G Sbjct: 92 ----ILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + TTP I L ++L+ L G V++E SSHGL+Q R DG Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258 + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLTGLRA 264 Query: 259 --RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314 A G + +G L+ ++ T V+G P+ G F V N Sbjct: 265 DIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSN 324 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L+ Sbjct: 325 QLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTLR 383 Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I Sbjct: 384 ALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDM 443 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G+ ++ +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 444 IADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEH 502 Query: 489 IREIL 493 +R L Sbjct: 503 VRLAL 507 >gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM 17393] Length = 482 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 246/474 (51%), Gaps = 45/474 (9%) Query: 19 SIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 +I P+Q E +I V+ DSR +QAG +F+A+ G + DGH +IP AI +GA A++ Sbjct: 9 AIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGAVAVLC-- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133 +D + + V ++ + + A+ Y ++ VTGT+GK+++A+ + Sbjct: 67 ----EDVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIATLL 122 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G +++G ST+ ++ D + TTP PI L + L ++ G +V +E Sbjct: 123 YNTFRYFG---YKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEV 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH + Q R+ G++ G FTNL RDH+DYH+T + Y AK + F++ +PK + ++ D Sbjct: 180 SSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-MPKGAFSLTNLD 238 Query: 250 D----AYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFL 303 D ++ + + R LS ++GK + H + + N ++ + Sbjct: 239 DKNGLVMTQNTRSKVYTYSLRSLS-DFKGKILESHFEGMLLDFNNHELAVH--------- 288 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G F N L G + +G VL L L V GRF+ V + +G VDYA Sbjct: 289 --FIGRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAV-RSPKGITAIVDYA 345 Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 HT ++L +L I + G+II V G GG+RD+GKRPIM K A +D I+T DNPR Sbjct: 346 HTPDALINVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPR 405 Query: 422 SEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +++ G+ I +R EAI+TA + DV++VAGKGHE Sbjct: 406 FEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459 >gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 21-1] Length = 471 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 168/479 (35%), Positives = 244/479 (50%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLAELLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia solanacearum GMI1000] gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (udp-murnac-tripeptide synthetase) protein [Ralstonia solanacearum GMI1000] Length = 514 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 237/486 (48%), Gaps = 34/486 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI G A++ + + A R Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEAHGYVVPADAPAR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ Y G ++ VTGT+GK+S + ++ Q R G Sbjct: 92 ----ILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + TTP I L +L+ L G V++E SSHGL+Q R DG Sbjct: 148 AVVGTLGTGFVDALVATG-FTTPDAIQLQHSLADLHRAGARAVAMEVSSHGLEQGRADGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGGRLLA-GLR 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVY 313 AG + G G+ + V G FD P+ G F V Sbjct: 264 AGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVS 323 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G+ + G+ L LEKL V GR E G G + VDYAHT ++LE L Sbjct: 324 NQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I Sbjct: 383 RALAPITGARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQLILD 442 Query: 431 EIIHGI--PGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I G+ P I+ +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 443 MIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAGKGHESTQEIA-GRKRPFSDQE 501 Query: 488 IIREIL 493 +R L Sbjct: 502 HVRLAL 507 >gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 107-1] Length = 471 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTALGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gemmatimonas aurantiaca T-27] Length = 514 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 172/473 (36%), Positives = 247/473 (52%), Gaps = 41/473 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + +G F+A+ G +DGH ++P+A GA +V +D +A + Sbjct: 27 IVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIV------EDEAAARVID 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VV + R+ +L A+ + I AVTGT+GK++ ++ + +G + I Sbjct: 81 MPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRAASI 140 Query: 148 GPTSTISSFAQDN-----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + A + LTTP P+ L + L L+ +GVT V++E SSH L QHR+DG+ Sbjct: 141 GTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAMETSSHALHQHRVDGV 200 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A FTNL RDH+DYH T +AY +AK+ L L P + A DD + + Sbjct: 201 HFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAP-DGVACFNIDDVTWQHTVAEMDV 259 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-------------LFPLPGE 309 +G + S + F L+ A V G F+ PL G+ Sbjct: 260 SGSQA-SAPRRTTFSALQD--ADVTAHDVVYDATGSRFELRVRTAQGTTQHQVTLPLIGD 316 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V NAL AA +A+GI V + L + VPGR E + T + DYAHT ++L Sbjct: 317 FNVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEP---TVLRDYAHTPDAL 373 Query: 370 EMILKNIRTIT------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 E L +R T R+IVVFGCGGDRD+GKRP+MG IA LAD+ IVT DNPR+E Sbjct: 374 ERALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAERLADVTIVTSDNPRTE 433 Query: 424 DPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DPE+I +I G+ + +R +AI A+ M + DV+V+AGKGHET I Sbjct: 434 DPERILDDIEAGMTRRDHQRIVDRRDAIAAALRMASAHDVVVLAGKGHETYQI 486 >gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM 18228] Length = 488 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 156/493 (31%), Positives = 253/493 (51%), Gaps = 57/493 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ + DSR I+ G +FVA+ G + DGH +I +AI +GA A+V + T+ Sbjct: 20 DKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKGATAVVCET------LPETL 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V+++ + A+ YG +++ VTGT+GK+++A+ + + ++ G Sbjct: 74 SETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTIATLLYNMFRKFG--- 130 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ G ST+ ++ + TTP PI L + L ++ +G + +E SSH + Q R+ Sbjct: 131 YKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFMEVSSHAVAQKRIG 190 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+K G FTNL RDH+DYH+T + Y AK F+ LL K + A+ ADD + VM + Sbjct: 191 GLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGLL-KTAFALTNADD-RNGLVMTQN 248 Query: 261 HNAGC-------------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 A +VL G++G + + N ++V + Sbjct: 249 TKAKVATYSLRSLADFKGKVLEDGFEGMLLDI-------NNREVNVQ-----------FI 290 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F N L +G VL L L V GRF+ + +++G VDYAHT + Sbjct: 291 GRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSL-RSTKGYTAIVDYAHTPD 349 Query: 368 SLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L I + +GR +I V G GG+RD+GKRPIM + A+ L+D I+T DNPR E+P Sbjct: 350 ALTNVLNTIHEVLNGRGKVITVVGAGGNRDKGKRPIMAQEAVRLSDRVIITSDNPRFEEP 409 Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + I +++ G+ + +R EAIRTA + DV++VAGKGHE + G K Sbjct: 410 QDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKGHENYQDI-KGVK 468 Query: 481 KMSVDCDIIREIL 493 D +++ EI Sbjct: 469 HHFDDKEVLSEIF 481 >gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 485 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 162/470 (34%), Positives = 245/470 (52%), Gaps = 24/470 (5%) Query: 13 ELINQL-SIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ L I P++ + I + DSR ++ G +F I G DGH F QA+ +GA Sbjct: 3 ELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 A+V +L + P+++V +T++ ++ AS YG+ + ++ VTGT+GK+ Sbjct: 63 AVVAERPLAL---------DVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV + + + +G + IG T I + R TTP + L + + + ++ V Sbjct: 114 SVTHILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAV 173 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244 +E SSH L R+ G FTNL DHIDYH+T + Y AK LF +L A Sbjct: 174 MEVSSHALHLGRVRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTA 233 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 +I +DD S +++ V++ G + + ++ + + + T+ V G+ D Sbjct: 234 VINSDDPASDRLIQMT---TADVVTYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F VYNAL AA G+ + + LEK+ V GRFE V + + VDYA Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPVD-EGQDFTVIVDYA 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SLE +L+ ++ I VV GCGGDRD KRP+MG+IA+ AD I T DNPR+E Sbjct: 350 HTPDSLENVLQTVQDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTE 409 Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DP+ I A+I G+ + +R AI AI N D++V+AGKGHET Sbjct: 410 DPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAANTGDIVVIAGKGHET 459 >gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CMR15] Length = 514 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 168/488 (34%), Positives = 237/488 (48%), Gaps = 38/488 (7%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI G A++ + + Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEA------HGYVVP 85 Query: 88 SNTP--ILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +N P IL VD + A++ Y G ++ VTGT+GK+S + ++ Q R G Sbjct: 86 ANAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGE 145 Query: 143 SSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +G T + + TTP I L +L+ L G +++E SSHGL+Q R D Sbjct: 146 RCAVVGTLGTGFVDALVATG-FTTPDAIQLQHSLADLHRAGARAIAMEVSSHGLEQGRAD 204 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 205 GTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGGRLLA-G 261 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQ 311 AG + G G+ + V G FD P+ G F Sbjct: 262 LRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRATVHSPMVGLFN 321 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L G+ + G+ L LEKL V GR E G G + VDYAHT ++LE Sbjct: 322 VSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQ 380 Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I Sbjct: 381 TLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQLI 440 Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I G+ ++ +R AI A+ + DV+VVAGKGHE+ + G K+ D Sbjct: 441 LDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAGKGHESTQEIA-GRKRPFSD 499 Query: 486 CDIIREIL 493 + +R L Sbjct: 500 QEHVRLAL 507 >gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittHH] Length = 488 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 240/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK LF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3] Length = 489 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 173/492 (35%), Positives = 254/492 (51%), Gaps = 50/492 (10%) Query: 13 ELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+ LS P W N + DSR + G +F + G DGH F +A+A+ A Sbjct: 2 KLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARKA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126 AIV S+ + P+++V ++R+ +++ A YG+ H +++ VTGT+GK Sbjct: 62 AAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 ++ S ++QI +++G + IG S+ N TTP + L + + +GV Sbjct: 113 TTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAAN--TTPESLILQRTFKQMVDEGVE 170 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPK 240 V++E SSH L Q R+ G FTNL +DH+DYH T + Y NAK LF +L + Sbjct: 171 FVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDE 230 Query: 241 ESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P A++ DD S+ H +++ G + K V A +Q+ I+ G Sbjct: 231 RRPKFAVLNHDDPVSQYY---KHMTAAPIVTYGMREK----SDVMA----EQIRITAGGM 279 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F P L G F VYN L AA C+A G + L + VPGRFE V Sbjct: 280 AFRLCTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV 339 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + I VDYAHT +SLE LK +R + + VV GCGGDRD+ KRP+M ++A+ Sbjct: 340 -DEGQNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRY 398 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVA 465 AD+AI T DNPRSEDP++I ++ G+ I K +R EAIR AI + DV+++A Sbjct: 399 ADVAIFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIA 458 Query: 466 GKGHETVHIVTN 477 GKGHET I+ N Sbjct: 459 GKGHETYQIIGN 470 >gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella boydii 3594-74] Length = 471 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 169/479 (35%), Positives = 246/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ + V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTVPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 769 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 164/510 (32%), Positives = 266/510 (52%), Gaps = 50/510 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ E +I + DSR + +G +FV VG K DGHL++ +A +GA Sbjct: 245 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRGAV 304 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGK 126 A+V S +++ +++V++T L A+ YG HP +AV GT+GK Sbjct: 305 AVVASKEIDIEETLGC----KALVIVEDTSLVLPALAAAFYG-HPSKNMAVIGIVGTNGK 359 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQG 181 ++ A ++ + + GL + G ST++ + N+L TTP + + K ++ + G Sbjct: 360 TTTAYLIRAMYEAMGL---RTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNG 416 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PK 240 V +EASSHGL R + + FTNL RDH+D+H++++ Y NAK +LF ++ P Sbjct: 417 TEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPD 476 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGK 298 I+ DD + + + N V++ + K +H K + QV + Sbjct: 477 RHRKIVNIDDPNAPFFIAQG-NPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKG 535 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + L G +YN L A + IA+G ++ +E++ VPGR E + G I Sbjct: 536 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVI 595 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT ++L +L ++R + + RII VFGC G+ D+GKRPIM KIA D +D+ I+T D Sbjct: 596 -VDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSD 654 Query: 419 NPRSEDPEKIRAEIIHGIPGF----------------IEKGNRI-------EAIRTAIEM 455 NP++EDP I +++ G+ G+ + G+R+ A+R A+ M Sbjct: 655 NPKNEDPLDILDDMLAGV-GWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAM 713 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + D++VVAGKGHET I G+KK D Sbjct: 714 GEEGDIVVVAGKGHETYQI--EGDKKEFFD 741 >gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate ligase [Haemophilus influenzae 10810] Length = 488 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 158/483 (32%), Positives = 240/483 (49%), Gaps = 38/483 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +++ + Q + G + +G + + + TT S + + +LS G S Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL +I Sbjct: 179 IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304 ADD + + +A ++V F KV + + + I K D F Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288 Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ IV Sbjct: 349 -TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467 Query: 473 HIV 475 I+ Sbjct: 468 QII 470 >gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia ruckeri ATCC 29473] Length = 490 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 165/488 (33%), Positives = 242/488 (49%), Gaps = 32/488 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG A++ + D S T Sbjct: 15 RALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGIAADASITAM 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + N + LS A + Y + P L + G +G + + Q + Q S + Sbjct: 75 HGVPVIYLSNLNQHLSRLAGQFY-QQPGAALRLIGVTGTNGKTTTTQLLAQWSQ----AL 129 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + + L L QG T ++E SSHGL Q+R+ Sbjct: 130 GETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGLVQNRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 190 AALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFST--HQSEHKIINADDDVGLRWLSQ 247 Query: 260 AHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A + G+ G ++ V N + L G F V N Sbjct: 248 LPQAVAVSMENKVPQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAFNVSNL 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 LVA +++ A +L +L V GR E + + VDYAHT ++LE L Sbjct: 308 LVALSTLLSLDYPLADLLAAAPQLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAA 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G Sbjct: 367 ARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVADILGG 426 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDI 488 + ++ G R EA+ +AI + DV++VAGKGHE +V G +++ D Sbjct: 427 L---MDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKGHEDYQLV--GHRRLDYSDRIT 481 Query: 489 IREILGLI 496 + +LG++ Sbjct: 482 VARLLGVV 489 >gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 16-3] gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli RN587/1] gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 60-1] Length = 471 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 168/476 (35%), Positives = 244/476 (51%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ G+ + Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 481 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 154/495 (31%), Positives = 259/495 (52%), Gaps = 38/495 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +N S+F ++ ++ ++ +++D+R ++ G +FV I G DGH F A GA AIV Sbjct: 1 MNIKSLFNVE-QDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCE 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 Y L++ + P ++V +T L A ++ K E N+ +TGT+GK++ A Sbjct: 60 --YELENIA------IPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYI 111 Query: 133 VQQICQRSGLSSFQ--IGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + L+ F+ +G T ++ + + TTP P+ L + + +GV V+ Sbjct: 112 LEHL-----LTGFEGHVGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVA 166 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L+ HR+D + FTNL +H+D+H T YF AK +LFE L P + I+ Sbjct: 167 IEVSSHALELHRVDYCQFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTP-DGHGIV 225 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 DD Y ++++ R + V + G ++ + IH+ ++ + Sbjct: 226 NLDDEYGEKLVNRLKESQTAVYTYGIESDADFKAEDIHMTSFGT-----SFKLTCPEGIY 280 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + PL G F VYNAL A + + ++ ++ L V GR E + + + V Sbjct: 281 EVQTPLLGRFNVYNALGAMASAYSASMPMEQIIALIKTLSPVDGRMEII-NEGQDFTVIV 339 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + +E +L+ + I + VV GC GDRD+ KRP++ K+++D AD I T D+P Sbjct: 340 DYAHTPDGVEKVLEFVTGIKQNGVKVVIGCPGDRDRTKRPVIAKLSVDYADDVIFTTDDP 399 Query: 421 RSEDPEKIRAEIIHGI-PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 SEDP I E++ GI P E +RIEAI TAI K D++++AG+GHE + +G Sbjct: 400 HSEDPVDILNEMVSGIKPMNYEVIVDRIEAIETAINKAQKNDIVLIAGRGHEQIQYWKSG 459 Query: 479 EKKMSVDCDIIREIL 493 ++ D ++ +E+L Sbjct: 460 NIRLD-DREVAKEVL 473 >gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae Rd KW20] gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae Rd KW20] gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae RdAW] Length = 488 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 40/484 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ LS A Y N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 +++ + Q + G + +G F Q + + TT S + + +LS G Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFT 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL + Sbjct: 178 SIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 I ADD + + +A ++V F KV + + + I K D F Sbjct: 236 INADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFE 287 Query: 305 ----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 288 SSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNK 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ I Sbjct: 348 P-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKII 406 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VT DNPR+E +I +I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 407 VTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEH 466 Query: 472 VHIV 475 I+ Sbjct: 467 YQII 470 >gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis SP1PR4] Length = 506 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 164/501 (32%), Positives = 254/501 (50%), Gaps = 29/501 (5%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F E++ ++ ++ + V DSR G +FVA+ G DG+ ++ A+ GA A Sbjct: 3 FEEIVRGVTTLAVRLAPVDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGAVA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKS 127 ++ S +D T RS+ + +V+ R+ L+ ++ +G HPE +L AVTGT+GK+ Sbjct: 63 VLTDSPTVFEDL--TSRSDIGVALVEYGRRALAEVSANFFG-HPEQVLKLCAVTGTNGKT 119 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + A ++ + + S +G T + + + TTP + + + G T Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPA 244 +E SSH L Q R+ G+ L FTNL +DH+DYH T Y AK +F + LP A Sbjct: 180 MEMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRI-A 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +I ADD + +++ A +GC V + Y+ + V + +F + Sbjct: 239 VINADDPSAGMMVEAA--SGCEVWT--YRVGAREFDENAYEFVADDVKLGAGWTEFALVT 294 Query: 305 P---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 P L G VYN + A +A G+ + +L VPGRFE VG N G Sbjct: 295 PMGERVVRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGRFETVG-NDLG 353 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++L ++ R + GR+I +FGCGGDRD+ KRP MG+ A D +D+ I Sbjct: 354 ITVVVDYAHTDDALRNLIGLARELVGEGRVITMFGCGGDRDRTKRPKMGRAAGDGSDLVI 413 Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPRSEDP I A+++ G+ +E + NR AIR AI + D++++AGKGHE Sbjct: 414 VTSDNPRSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLAGKGHE 473 Query: 471 TVHIVTNGEKKMSVDCDIIRE 491 + G +SV D + E Sbjct: 474 REQVSRQGSILVSVPFDDVME 494 >gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708] Length = 494 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 165/475 (34%), Positives = 243/475 (51%), Gaps = 35/475 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + ++S AG +F+ I G + DG F A+A GA A +VS ++ Sbjct: 22 EVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASGAVAAIVSPE--------AVQK 73 Query: 89 NTP-----ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 N P ++ N K + ++ YG + + L VTGT+GK++ ++ + Sbjct: 74 NPPTPESLVISASNMNKACAQISAAFYGYPGQQLRMLGVTGTNGKTTTTHLIEYFLTKVN 133 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L + +G T F+Q TTP + L + L+ G +E SSH L Q R+ Sbjct: 134 LPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVMEVSSHALAQDRVF 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVMK 258 G FTNL +DH+DYHQ + YF AK LF P + AII ADD Y + ++ Sbjct: 194 GCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFS---PDYLQGRAIINADDEYGQRLIT 250 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS----VEGKDFDFLFPLPGEFQVYN 314 SV + + + N Q + +S D F PL G++ + N Sbjct: 251 GLSKERVWTYSVNNHHADLRMSDL----NYQPIGVSGILHTPKGDVAFSSPLVGQYNLEN 306 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMIL 373 L A + +G+D LV + K VPGR E V ++++ + VDYAHT +SL +L Sbjct: 307 LLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVSVIVDYAHTPDSLGNLL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K++R GRII VFGCGGDRD+ KRP MGKIA +LADIA+VT DNPR+EDPE+I +I+ Sbjct: 367 KSVRAFIPGRIICVFGCGGDRDRTKRPKMGKIAAELADIAVVTSDNPRTEDPERIIEDIL 426 Query: 434 HGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 GIP ++ +R AIR AI D +++AGKGHE I+ G +K+ D Sbjct: 427 AGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKGHEDYQIL--GTEKIHFD 479 >gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Herminiimonas arsenicoxydans] gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Herminiimonas arsenicoxydans] Length = 508 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 242/483 (50%), Gaps = 46/483 (9%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR I G +F+A G++ DG +I AI +GA+AI+ +A D N P L Sbjct: 27 SDSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDE----EWNVPHLA 82 Query: 95 VDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +DN R A+ YG HP++ + AVTGT+GK+S + ++ R G + IG T Sbjct: 83 IDNLRACAGFIAAAYYG-HPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIG-TL 140 Query: 152 TISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + F TTP + L + L + G T +++EASS GL Q RL G+ Sbjct: 141 GVGIFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHF 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTN RDH+DYH AY AK LF+ P A++ DDA +++R Sbjct: 201 DMALFTNFTRDHLDYHGDMAAYEAAKTMLFD--WPGLRHAVVNLDDALGVRLVERLKR-- 256 Query: 265 CRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFL---------FPLPGEFQVY 313 R +G G + + V I + + + G F L GEF V Sbjct: 257 -RQSGIGITGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVS 315 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G+ +A GI + V+ +E L VPGR + +G + + +DYAHT ++LE L Sbjct: 316 NVLGIIGILLAKGIALSNVVAAIEALTSVPGRMQQLG-GAEAPLVVIDYAHTPDALEKTL 374 Query: 374 KNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +R + + G + VFGCGGDRD GKRP MGK A+ AD IVT DNPR E+P I A Sbjct: 375 ATLREVANERGGALWCVFGCGGDRDAGKRPQMGKAAM-AADHIIVTSDNPRHEEPASIIA 433 Query: 431 EIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +I+ G+ P +E +R +AI A KQDV+++AGKGHE + G K+ + Sbjct: 434 QIVAGMDVAKNAPHIME--DRAKAILYAGRHAAKQDVILLAGKGHEAYQEI-KGRKQPFL 490 Query: 485 DCD 487 D D Sbjct: 491 DAD 493 >gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Solibacter usitatus Ellin6076] Length = 494 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 245/481 (50%), Gaps = 35/481 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR + G +F A G+K DG F A+A+GA A V+S + + D +A Sbjct: 24 EVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALARGAVA-VISESLAPPDLAARW-- 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V++ R L+L A +G+ E + +TGT+GK++ A + + +G + Sbjct: 81 ----IQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKTTTAYLTDSVLRAAGGVTAM 136 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TI L TTP + L + S L G THV++E SSH L R+ G+ Sbjct: 137 IG---TIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVTMEVSSHALALGRVHGL 193 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259 FTNL RDH+D+H + YF AK LFE +P A++ DD YS+ + R Sbjct: 194 NFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEG--AGGNPPRFAVLNTDDEYSRRL--R 249 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 H R+ + + + + + + + F PL G+ VYN L A Sbjct: 250 LHARTERLWYGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESPLIGKINVYNILAAC 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + G+ +V + L VPGRFE V + + VDYAHT ++L ++ R + Sbjct: 310 ATGFSYGLAPEVVARGIASLKAVPGRFERV-DEGQPFVVVVDYAHTDDALRNVIAVARGL 368 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 R+I +FGCGGDRD+ KRP+MGK A + +D ++T DNPRSEDP I + + GI Sbjct: 369 NPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTSDNPRSEDPLTIMNDALVGIRRT 428 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---IIREI 492 + + +R AIR AI+ + D++++AGKGHET ++ K ++D D + RE+ Sbjct: 429 DVAHVVEPDREAAIRRAIKEAREGDIVILAGKGHETYQVL----KDKTIDFDDRAVAREV 484 Query: 493 L 493 L Sbjct: 485 L 485 >gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis Nb-231] Length = 502 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 162/486 (33%), Positives = 245/486 (50%), Gaps = 29/486 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER I+ V+ DSR ++ G++F+A+ G G F +A++QGA AI+ D + + Sbjct: 25 ERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAAAILWQPTPGFDDQALSA 84 Query: 87 RSN---TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 R P + V + + + A+R YG N ++ VTGT GK+SV+ F+ G Sbjct: 85 RCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTDGKTSVSQFIAHAL---G 141 Query: 142 LSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 ++ G T+ + LTTP PI L L+ L ++ V +E SSH LDQ Sbjct: 142 RKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHAQAVVIEVSSHALDQ 201 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 RL G+ TNL RDH+DYH +Q AY AK LF+ P+ ++ DD + + + Sbjct: 202 QRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR--PELHTVVVNVDDDFGRSL 259 Query: 257 MKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +A RV+ G + + ++ A + ++ + G L G F Sbjct: 260 RASVRHA--RVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRAAVRVGLLGRFNAA 317 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A G +A+ + L+ L L V GR E G+ R + +DYAHT L+ L Sbjct: 318 NVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRP-TVVIDYAHTPAGLQAAL 376 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R +GRI VFGCGGDRD+GKRP+MG +A AD I+T+DNPR+E+P +I AEI Sbjct: 377 AAMREHFAGRIWCVFGCGGDRDRGKRPLMGALARASADRIIITNDNPRTENPRRIIAEIQ 436 Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G IE +R EA+ +I +D ++VAGKGHE ++ + S D + Sbjct: 437 AGAGADSRVRVIE--DRREAVIHSIRAAAPEDAILVAGKGHEEYQLIGTRQLPYS-DRET 493 Query: 489 IREILG 494 +++ LG Sbjct: 494 VKQALG 499 >gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plautia stali symbiont] Length = 495 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 165/480 (34%), Positives = 243/480 (50%), Gaps = 16/480 (3%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++ DSR AG +F+A+ G+ DG FIPQAIAQG A++ + D Sbjct: 20 RPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGVAAVIAEAEGEASDGDIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + P + L + G +G + + Q I Q + L Sbjct: 80 HGVPVIYLAQLPQRLSALAGRFY-QQPADKLKLIGVTGTNGKTTTTQLIAQWANLLGETG 138 Query: 148 GPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 T+ + + Q + TT S + + L L QG T ++E SSHGL QHR+ + Sbjct: 139 AVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLVGQGATVAAMEVSSHGLVQHRVAALP 198 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A FTNL RDH+DYH Q Y +AK LF E E AII ADD + +++ +A Sbjct: 199 FAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQVGE--AIINADDEVGRRWLEKLPDA 256 Query: 264 GCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 LS G +G+++ + V S + +F L G F V N L+A Sbjct: 257 VAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFSSSWGNGEFDSRLMGAFNVSNLLLAL 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + + ++ +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 317 ATLLTLDYPLDTLVASASQLQPVCGRME-VFTAVHKPTVVVDYAHTPDALEKALEAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 G++ VFGCGGDRD+GKRP+MG IA ADI ++TDDNPRSE+P I +I+ G+ P Sbjct: 376 CKGQLWCVFGCGGDRDKGKRPLMGAIAEQFADIVVITDDNPRSEEPTAIINDILTGLLDP 435 Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 G R +A+ A+ + D+++VAGKGHE I+ N S D D + +LG++ Sbjct: 436 GRACVIAGRAQAVTHAVMQASADDIVLVAGKGHEDYQIIGNRRLDYS-DRDTVARLLGVM 494 >gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 491 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 160/477 (33%), Positives = 248/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD + E M+ + V++ G + K + T+ + + Sbjct: 237 VLNNDDVVTAEYMR---STAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++HG G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHETYQII 466 >gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei 53G] Length = 492 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 32/489 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + + IR Sbjct: 15 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAKDEATDGEIR 74 Query: 88 S--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y P + L + G +G + + Q + Q S L Sbjct: 75 EMHGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL--- 130 Query: 146 QIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G TS + + L TT S + + L+ L QG T ++E SSHGL QH Sbjct: 131 -LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQH 189 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + Sbjct: 190 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWL 247 Query: 258 KRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +A + + G+++ V + + S D + L G F V Sbjct: 248 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L Sbjct: 308 NLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKAL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 367 QAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI- 425 Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S Sbjct: 426 --LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVT 483 Query: 488 IIREILGLI 496 + R +LG+I Sbjct: 484 VAR-LLGVI 491 >gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K] Length = 496 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 245/489 (50%), Gaps = 36/489 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR + G +F A+ G + DGH F +A +GA A+V + Sbjct: 21 EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAP 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + F A RL + AVTGT+GK++V +++ + C R+ ++ +G Sbjct: 81 SARRAMALAAASFHGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 131 Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TIS F +R TTP + L+ + + G +E SSH L Q R+ GI+ Sbjct: 132 VLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGIRF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH+ AYF AK RLF E L A+I A D + + + G Sbjct: 192 QAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 250 Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 RV G + G + +V T PL G+ + N L AAGL + Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAGLAL 310 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ V+ L H PGR E + + RG ++VDYAHT ++L ++ +R ++ R Sbjct: 311 GLGLPPDAVVRGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 368 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +I VFGCGGDRD+GKRP+MG A AD+AIVT DNPR+EDP I A+++ G+ Sbjct: 369 LICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPA 427 Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G++ + +R AI A+E + D ++VAGKGHE V EK+ D Sbjct: 428 LGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAEKRPFSDR 486 Query: 487 DIIREILGL 495 D R+ LG+ Sbjct: 487 DEARKALGI 495 >gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 463 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 242/461 (52%), Gaps = 33/461 (7%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F M +K N ++ +S+ + +F AI G +DGH FI +AI +GA +V + Sbjct: 1 MFTMNLDCKKYN-ITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPF-- 57 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 +DF I+VV++++K + E+ ++ VTGT+GK+S + I Sbjct: 58 KDFKN-------IIVVEDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAIL 110 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + ++ G T+ + N + TTP LS +G+ V+ E SSH Sbjct: 111 SQK----YKGGIIGTMY-YKLGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSH 165 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 LDQ R+ K A FTNL +DH+DYH+T + YFNAK RLF++ + ++ DD Y Sbjct: 166 ALDQLRVYPTKFFATVFTNLTQDHLDYHKTMENYFNAKRRLFKDY--EYEVCVLNIDDDY 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + + + ++ GY HLK + + K ++ L G+FQ Sbjct: 224 GSMLYEEFKD---KAITYGYSEN-AHLKIDYFDQENKVFGFYYKNKHYEIKTNLKGDFQA 279 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN + L +G D + + L +PGRFE + N G ++ +DYAHT ++LE + Sbjct: 280 YNMGASILLGFYMGFDIEEIQRGILSLSSIPGRFETIELN--GVKVVIDYAHTPDALEKL 337 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK + IT R+I VFG GG+RD+ KRP MGKIA +L+DI+I+T DNPR E+ I +I Sbjct: 338 LKTAKAITKNRLICVFGAGGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDI 397 Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + GI G + + +R +AI A+++ DV+V+AGKGHE Sbjct: 398 LEGIDPSKGPMVEEDRKKAIALALDIALDGDVVVIAGKGHE 438 >gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Algoriphagus sp. PR1] Length = 487 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 163/485 (33%), Positives = 252/485 (51%), Gaps = 42/485 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR ++ G +FVA+ G + DGH FI +A+A GA+A++ + + + Sbjct: 21 EVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAKAVI------FEKLPSEL 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + V N+ K + + A + E ++AVTGT+GK++ + + Q+ R G S+ Sbjct: 75 QKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVTLLHQLFMRMGYST 134 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G ST+ + + + TTP + + L + G TH +EASSH + Q R+ Sbjct: 135 ---GLLSTVENKINEEVIPATHTTPDSVSIQALLKQMLEAGCTHCFMEASSHAIVQERIA 191 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G+KL FTN+ DH+DYH T Y AK +LF+E LPK + A++ DD K M Sbjct: 192 GLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDE-LPKAAFALVNGDD---KRGMVML 247 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNA 315 N + G K A + ++ ++EG + D F + G F YN Sbjct: 248 QNCKGSHQTFGL--------KTPAEFKAKIISNTLEGLELDINGTLIWFMMIGAFNAYNL 299 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + +G + VL L + GRF+ + G VDYAHT ++L+ +LK Sbjct: 300 LGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISIG--GVTAIVDYAHTPDALDNVLKT 357 Query: 376 IRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 I + +G ++I + GCGG+RD+ KRPIM KIA+ +D I+T DNPR EDP I ++ Sbjct: 358 INGVRTGVEQLITIVGCGGNRDKTKRPIMAKIAVQESDKVILTSDNPRFEDPMDILKDMQ 417 Query: 434 HGIP-GFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 GI I K +R EAI+TA + NK D++++AGKGHE + G K D +I Sbjct: 418 TGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKGHEDYQEI-KGVKHHFDDAEI 476 Query: 489 IREIL 493 + E L Sbjct: 477 VTEYL 481 >gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 86-028NP] gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2846] Length = 488 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 158/483 (32%), Positives = 240/483 (49%), Gaps = 38/483 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +++ + Q + G + +G + + + TT S + + +LS G S Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF EL +I Sbjct: 179 IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304 ADD + + +A ++V F KV + + + I K D F Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288 Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ IV Sbjct: 349 -IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467 Query: 473 HIV 475 I+ Sbjct: 468 QII 470 >gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.1-21] gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittII] gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R2866] Length = 488 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 239/483 (49%), Gaps = 38/483 (7%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PEL N + + M DSR ++AG +FVAI G++ DG+ FI A+ GA Sbjct: 9 NLPELKNDIELHNMVL----------DSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGAS 58 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A+V + S + + N P++ + LS A Y +N+ + VTGT+GK+ Sbjct: 59 AVVSETELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 +++ + Q + G + +G + + + TT S + + +LS G S Sbjct: 119 TISQLLAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTS 178 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGL QHR++ + FTNL RDH+DYHQ+ + Y AK RLF EL +I Sbjct: 179 IEVSSHGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTEL--DTQIKVI 236 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-- 304 ADD + + +A ++V F KV + + + I K D F Sbjct: 237 NADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIHYHFKGADITFES 288 Query: 305 ---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 PL G F V N L+ ++ G +L + L V GR E + ++ Sbjct: 289 SWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP 348 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M ++A A+ IV Sbjct: 349 -TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIV 407 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+E +I A+I+ G + G +R +AI+ AIE + DV+++AGKGHE Sbjct: 408 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHY 467 Query: 473 HIV 475 I+ Sbjct: 468 QII 470 >gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 69-1] Length = 471 Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 167/479 (34%), Positives = 245/479 (51%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ +V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I + G ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI---LAGMLDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 413 HAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens] Length = 483 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 167/493 (33%), Positives = 250/493 (50%), Gaps = 45/493 (9%) Query: 25 WRERKI-----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 W +R I +++ +DSR ++ G +F A G DG L+I +A+A GA A+V Sbjct: 10 WIKRDIIDGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYIEKAVASGAAAVVYEPNNLP 69 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQI 136 Q T+ + P + + + L A R + +P L VTGT+GK+++A + Q Sbjct: 70 QGI--TLPTAIPCIAIPQLAEKLGEIAKRFFN-NPSQFLGLTGVTGTNGKTTIAYQLAQA 126 Query: 137 CQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G S IG TI D TTP + L + + +G+ V +E SSH Sbjct: 127 HDLLGQHSAYIG---TIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSH 183 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L QHR+D ++ FTNL DH+DYHQT QAY AK RLFE + AII DD Sbjct: 184 ALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFER--SELQWAIINQDDD- 240 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307 +++M + ++ G + + C + Q + + G + + P Sbjct: 241 CQDLMSNVLKTHVKKVTYG-------MHQNCDV-KAIQWNMDITGTEIEVKSPWGHHLLK 292 Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G+F +YN+L +A G + V++ + +L PGR E V ++ + VDYA Sbjct: 293 IKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGRMEIV---AQSPYVLVDYA 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L ++ I GR+ VVFGCGGDRD+ KRPIMGK A AD ++T DNPRSE Sbjct: 350 HTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVITSDNPRSE 409 Query: 424 DPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DPE I EI G+P NR EAI A+ D++++AGKGHE+ + N + Sbjct: 410 DPEIILNEIACGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESYQQIGNTKH 469 Query: 481 KMSVDCDIIREIL 493 S D +++R ++ Sbjct: 470 VFS-DQEVVRRLM 481 >gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702] Length = 484 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 229/464 (49%), Gaps = 42/464 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ ++ ++ G IFV + G + DGH + +++GA IV D + Sbjct: 23 VTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTD-----HDIKCGKQ-- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 LV DNTR L+ + YGK E + LAVTGT+GK++ A FV+ I G + Sbjct: 76 ---LVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCGCV 132 Query: 148 GPTSTISSF-----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + +Q T P L L + S G + +EASS LDQ+R+ Sbjct: 133 GTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQALDQYRIGDE 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 ++ FTNL RDH+DYH T + YF AK R+F A+I DD Y K + + + Sbjct: 193 RIAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTMC----KTAVINIDDEYGKRLAQEFSD 248 Query: 263 AGCRVLSVG---YQGKFIHLKKV-CA---IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + G Y +FI + C+ ++ +++ V+ + G + V N+ Sbjct: 249 IAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVD-------MNMTGLYNVQNS 301 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILK 374 L A + A+G D + L L V GR V RG + DYAHT ++L +L Sbjct: 302 LCAIAMVTALGFDMTECAKALSDLDGVDGRMNVV---YRGDFTVITDYAHTDDALIKVLS 358 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ +T GR+I VFG GDRD+ KRP+M K A D ADI ++T DNP E+P++I E++ Sbjct: 359 TLKPLTKGRLICVFGAAGDRDKEKRPMMAKAAEDNADILVITSDNPAHENPDEIIREVMT 418 Query: 435 GIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GI G +R EAI A++ K DV+ + GKGHET I+ Sbjct: 419 GISGKKPCRCITDRREAIAYALDTARKDDVIALCGKGHETYQII 462 >gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shigella sonnei Ss046] gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046] Length = 497 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 32/489 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + + IR Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAKDEATDGEIR 79 Query: 88 S--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y P + L + G +G + + Q + Q S L Sbjct: 80 EMHGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL--- 135 Query: 146 QIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G TS + + L TT S + + L+ L QG T ++E SSHGL QH Sbjct: 136 -LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQH 194 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ +K A FTNL RDH+DYH + Y AK L+ E + AII ADD + + Sbjct: 195 RVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWL 252 Query: 258 KRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +A + + G+++ V + + S D + L G F V Sbjct: 253 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 312 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L Sbjct: 313 NLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKAL 371 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I Sbjct: 372 QAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDI- 430 Query: 434 HGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S Sbjct: 431 --LAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVT 488 Query: 488 IIREILGLI 496 + R +LG+I Sbjct: 489 VAR-LLGVI 496 >gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 501 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 236/460 (51%), Gaps = 38/460 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S S+ IQ IFVA G DGH FI AI GA IV + ++I Sbjct: 26 IERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGAHTIVC------EKIPSSIHKK 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++V ++ L + +S Y HP ++ +TGT+GK+SVA+ + Q+ + G + Sbjct: 80 ITYVLVPDSMNALGIISSNFYD-HPTKKIKLIGITGTNGKTSVATILHQLFSKMGEKNIL 138 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 I I S TTP+ I + K L+ +G + +E SSHG+ Q R+ G+ Sbjct: 139 ISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEVSSHGIHQKRIAGLLFQ 198 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTN+ DH+DYH++ Y + K FE L K++ A+I +DD S +++K Sbjct: 199 GGVFTNITHDHLDYHESFDHYLSTKKFFFENL-SKKAFALINSDDENSYKIIKD------ 251 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAG 320 +LS Y F LKK A Q + S+ G L G F VYN L Sbjct: 252 -ILSKTY---FYGLKK-NANFKIQILKESIHGSQLLIDGHKIFTKLIGTFNVYNLLAGYA 306 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +G +L+ ++ + + GRFE +NS G R+ VDYAH + L+ +L ++ I Sbjct: 307 TAILLGKKKDNILKKIKNIKPIRGRFEQFISNS-GIRVIVDYAHNPDGLKTVLNTLKKIK 365 Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------RAE 431 + G++I V GCGG+RD KR +MGKI + D++I T DNPR ED EKI ++ Sbjct: 366 NDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDVSIFTSDNPREEDREKILVDMKNFKSS 425 Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I + NR +AI TAI++ K+D++++AGKGHET Sbjct: 426 IYKDKESILTFVNRKKAIETAIQIAKKKDIILIAGKGHET 465 >gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mucilaginibacter paludis DSM 18603] Length = 484 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 158/479 (32%), Positives = 246/479 (51%), Gaps = 41/479 (8%) Query: 11 FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E++N + +Q + +I+ + DSR + G +FVA+ G DGH +I QAI GA Sbjct: 4 LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 AIV +D A ++V ++ L A+ Y HP + ++ VTGT+GK Sbjct: 64 AIVC------EDLPAHTIGEVAFMMVADSAVALGQIAANFY-DHPSDKLKLVGVTGTNGK 116 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 ++VA+ + Q+ G ++ G ST+ + + TTP + L L+ + +QG Sbjct: 117 TTVATLLYQLFHDLG---YKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGC 173 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +E SSH + QHR++G++ G FTNL DH+DYH+T Y AK F+ LPK + Sbjct: 174 DYCFMEVSSHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDA-LPKSA 232 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGK 298 A+ DD N + + Q K LK + I Q + ++ Sbjct: 233 FALTNIDD----------RNGNIMLQNTRAQRKTYALKSLADYKAKILENQFGGLLLDID 282 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + F + G F YN L G +G D VL L KL GRF+++ + ++ I Sbjct: 283 NEEVWFKMVGSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFDYIISPNKVIGI 342 Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++++ +L I I G ++I + GCGGDRD+ KRPIM K+A +D I+T Sbjct: 343 -VDYAHTPDAVQNVLSTIHDIRKGTEKVITIIGCGGDRDKTKRPIMAKVACQWSDKVILT 401 Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPRSE PE+I ++ G+ I +R EAI+TA + + D++++AGKGHE Sbjct: 402 SDNPRSEVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHE 460 >gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia 3_1_6] Length = 482 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 154/489 (31%), Positives = 251/489 (51%), Gaps = 23/489 (4%) Query: 20 IFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 ++P+ E ++ E+ DSR G +FVA+ G+ DG FI A+A+GA +V Sbjct: 1 MYPLSLLESRVAAQGMELCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRP 60 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFV 133 SA ++ + R+ L L A YG P ++ VTGT+GK++ + Sbjct: 61 E------SAGNCGEAEVVDCADPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLL 114 Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + +G + +G S +D +TTP + + L+ + + GV +E SSH Sbjct: 115 DHLFASAGKKTGVLGTVSYRWPGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSH 174 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---D 249 LDQ+R+ G+ F+NL +DH+DYH + YF AK +LF + K + A D Sbjct: 175 ALDQNRVAGVGFGGAVFSNLTQDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTD 234 Query: 250 DAYSKEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + + A A G + + G G+++ K + + ++ EG++++F PL G Sbjct: 235 NPWGARLAGMAPEAIGFGLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVG 294 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + N L + + G+D E VPGR E + N + ++VDYAHT ++ Sbjct: 295 NYNAENLLAVQAVALGFGLDPE-AFRCFETFCGVPGRLERI-LNPQNLDVFVDYAHTPDA 352 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +L +R RI+ VFGCGG+RD+ KRP+MG+ L+D+A++T DNPR E+PE I Sbjct: 353 LINVLNALRGAGFKRIVTVFGCGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAI 412 Query: 429 RAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+++ G+ G E +R AI +E+L+ D L++AGKGHE+ + + + S D Sbjct: 413 MADVMPGLSGAAEVFADPDRRRAIEKGLELLHPGDALLIAGKGHESTQQIGDVKHPFS-D 471 Query: 486 CDIIREILG 494 +REILG Sbjct: 472 QQTVREILG 480 >gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 57-2] Length = 471 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 168/476 (35%), Positives = 244/476 (51%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ G+ + Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 416 VMEGRAEAVTCAVIQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida GB-1] gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1] Length = 496 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 167/484 (34%), Positives = 248/484 (51%), Gaps = 40/484 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ AY Sbjct: 9 LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAV----AYEE 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 Q + + P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 65 QGATVLPLTEVPLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L L QG V++E SSH Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ ++ TNL RDH+DYH + +AY AK +LF P ++ DDA+ Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDAF 238 Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304 + + + R+LS + L ++ + + TI + Sbjct: 239 GRRLAADFARRPSVDHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRS 298 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F + N + A + + +D AL +L+ +LH GR + +G + + VDY Sbjct: 299 QLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLHGPVGRMQRLGGGDKP-LVVVDY 355 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+ Sbjct: 356 AHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRT 415 Query: 423 EDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP++I +I PGF R EAI I DV+V+AGKGHE + Sbjct: 416 EDPQRIFDDI---RPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKGHEDYQEI- 471 Query: 477 NGEK 480 NGE+ Sbjct: 472 NGER 475 >gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya sp. PCC 8106] Length = 508 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 166/497 (33%), Positives = 250/497 (50%), Gaps = 22/497 (4%) Query: 1 MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL++L+ K + LS F P E+ + ++++S Q G +F+ + G + DG F Sbjct: 1 MKLKELLAK-----VADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI 117 P AIA GA A +VS + + + S V+ N + A+ YG + + Sbjct: 56 WPSAIANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQL 115 Query: 118 LAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKAL 174 V T + ++ + + S + G T +Q TTP + L + L Sbjct: 116 KLVGVTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKL 175 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G + +E SSH L Q R+ FTNL +DH+DYHQT + YF AK LF Sbjct: 176 AEAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLF 235 Query: 235 EELLPK--ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 P+ + AII ADD+Y K +++R S+ + ++ N + Sbjct: 236 S---PQYLQGRAIINADDSYGKRLIERLEADRVWSYSINDSTADLWAAQLSYEPNGVKGV 292 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + F PL G++ + N L A G +++G+D A ++ L + VPGR E V + Sbjct: 293 LHTPQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQIS 352 Query: 353 SRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 S+ + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DLAD Sbjct: 353 SQQDVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLAD 412 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468 + +VT DNPR+EDP +I +I+ GI I+ +R AI+ AI D +++AGKG Sbjct: 413 VVVVTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKG 472 Query: 469 HETVHIVTNGEKKMSVD 485 HE I+ G +K+ D Sbjct: 473 HEDYQIL--GTEKVHFD 487 >gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina ymp] Length = 487 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 166/479 (34%), Positives = 254/479 (53%), Gaps = 27/479 (5%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL P I E++ DSR ++ G +F+A+ G ++DG + I A+A+GA A Sbjct: 1 MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAA 58 Query: 71 IVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127 + + + +A + + + +LV V LS A R YG+ +++ VTGT+GK+ Sbjct: 59 VAFEA-----EGAAPMHAESAVLVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV+ + Q G +G T + + TTP P+ + L+ L G V+ Sbjct: 114 SVSQLLAQALDLLGERCGIVGTLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVA 173 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGLDQ R+ ++ FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 174 MEVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVI 231 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFP 305 DDA+ +E+ ++AH++ S+ F++ + H + ++ G+ Sbjct: 232 NLDDAFGRELAQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGV-LRSN 290 Query: 306 LPGEFQVYN--ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F + N A+V A L + G+D +L+ L +L GR + +G + + VDYA Sbjct: 291 LLGRFNLSNLLAVVGALLGMDYGLDE--ILKVLPQLQGPAGRMQRLGGGDKP-LVVVDYA 347 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M +A LAD+ VTDDNPRSE Sbjct: 348 HTPDALEKVLEAMRPHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSE 407 Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DP +I A+I G FI R +AI I DVLV+AGKGHE +T Sbjct: 408 DPAQIVADIRAGFCAPEQVQFIH--GRGDAIARLIAQAEAADVLVLAGKGHEDYQEITG 464 >gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa 2192] Length = 487 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+A+ Sbjct: 1 MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 55 GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCCIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + ++ S+ F++ ++ + + + PL Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N L A G + +G +L L +L GR + +G + + VDYAHT + Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411 Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A+I G F+ +R EAI I DV+++AGKGHE Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457 >gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Serratia odorifera DSM 4582] Length = 471 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 243/477 (50%), Gaps = 26/477 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG A++ + D P++ + Sbjct: 4 DSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P L + G +G + + Q + Q S L +G T+ + Sbjct: 64 SQLNQRLSALAGRFY-LQPAERLRLVGVTGTNGKTTTTQLLAQWSQL----LGETAAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L+ G T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMASYEAAKWSLFAG--HEVGQAIINADDDVGQRWLAQLPDAVAVT 236 Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L G +G+++ V N V S D + L G F V N L+A + Sbjct: 237 MQGNLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L+ +L V GR E V T + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAALLKSGSQLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALAAARLHCQGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG--F 439 + VFGCGGDRD+GKRP+MG IA AD +VTDDNPR+E+P+ I A+I+ G+ PG Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDPGRAL 415 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + G R EA+ +A+ +QDV++VAGKGHE +V N S D + +LG+I Sbjct: 416 VIHG-RAEAVTSAVMQAKQQDVVLVAGKGHEDYQLVGNRRLDYS-DRTTVARLLGVI 470 >gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia kristensenii ATCC 33638] Length = 471 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 162/479 (33%), Positives = 236/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG A+V + D S P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + LS A + Y + P L + G +G + + Q + Q + + +G TS + Sbjct: 64 RDLNQHLSNLAGQFY-QQPGAALRLVGVTGTNGKTTTTQLLAQWAQM----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L QG T ++E SSHGL Q+R+ + A Sbjct: 119 TVGNGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH +Y AK LF + II ADD + + + A Sbjct: 179 VFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDDVGRRWLGQLPQAVAVS 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G+ G ++ +V N + L G F V N LVA + Sbjct: 237 MEENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++G A +L L V GR E + + VDYAHT ++LE L R G+ Sbjct: 297 SLGYPLAELLASAPNLQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCKGQ 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDAG 412 Query: 444 N------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + R EA+ +AI DV+++AGKGHE +V N S + R +LG++ Sbjct: 413 HAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 470 >gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Marinobacter sp. ELB17] Length = 494 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 237/455 (52%), Gaps = 27/455 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++ G FVA+ G +I AI GA I++ S Q + RS Sbjct: 24 IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESE---QAGECSERSG 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG----- 141 I+ V + L A R + ++P ++ VTGT+GK+SV ++ Q+ Q +G Sbjct: 81 ALIVPVPELKVRLGKLADRFF-EYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCGV 139 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L + G T+ Q TTP + + L+ + + G ++E SSH LDQ R+D Sbjct: 140 LGTLGYGMPETL----QPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRIDR 195 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259 + L A FTNL RDH+DYH + AY AK +LF EEL +I DD + +++ + Sbjct: 196 LTLTAAVFTNLTRDHLDYHGSMAAYGEAKAKLFSREEL----RFVVINVDDPFGRKLYHQ 251 Query: 260 AHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R+ S+ + LK+ CA+ N + + +F PL G F N L A Sbjct: 252 LEGKCDRLRFSLHEPQAELWLKEFCALDNGFRAVLDGRWGEFTIEAPLMGRFNASNVLAA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A+G+D V + +L GR + V T G R VDYAHT ++L L +R Sbjct: 312 VATVMALGVDVTQVQHGVRRLVPPAGRLQ-VFTAGDGARAVVDYAHTPDALNNALAALRP 370 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 SGR+I VFGCGGDRD GKRP M + A + AD+ IVTDDNPR+E P I A+I+ G Sbjct: 371 HVSGRLICVFGCGGDRDSGKRPEMAQQAENGADLVIVTDDNPRTETPSAITADIMAGFIA 430 Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 P I+ +R +AI A+ + D+++VAGKGHE Sbjct: 431 PEKIQLIHSRAQAIAAALALAGPDDLVLVAGKGHE 465 >gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 495 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 238/469 (50%), Gaps = 29/469 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E+ DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 19 ERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y + P + L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFYNE-PSDQLRLVGVTGTNGKTTTTQLMAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + L TT S + + ++ L+ QG T ++E SSHGL QHR Sbjct: 134 LGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFAAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + +K A FTNL RDH+DYH + Y AK LF AII ADD + + Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS--THHYGQAIINADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A + + G+++ +V + + + + + L G F V N Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFASSWGEGEIESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A +A+G A +L E+L V GR E + + VDYAHT ++LE L+ Sbjct: 312 LLLALATLLALGYPMAELLNTAERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALE 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I Sbjct: 371 AARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI-- 428 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G R EA+ AI + DV+++AGKGHE IV N Sbjct: 429 -LAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 476 >gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gloeobacter violaceus PCC 7421] gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Gloeobacter violaceus PCC 7421] Length = 489 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 233/463 (50%), Gaps = 21/463 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S+DSR +Q G +F+ + G + DG F PQAIA GA +V+S + + + + Sbjct: 25 IAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIAGGAAGLVIS------ENARGVEAA 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 P++ V + + AS Y P L + G +G + + ++ + Q + Sbjct: 79 VPVIRVPDVVGTCARLASAYY-DFPARKLTLAGVTGTNGKTTTTHLIENLLQAQAPTGLV 137 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 S +Q+ R TTP + + K L+ + G + +E SSH L Q R+ G + A Sbjct: 138 GTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVMEVSSHALAQQRVAGCRFEA 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H ++YF AK LF + A+I ADD + R A + Sbjct: 198 AVFTNLTQDHLDFHPDMESYFQAKATLFSPEY-RSGRAVINADDPWGV----RLAAAYDQ 252 Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + +Q G I+ + + T+ F PL G+F + N L A G +A+ Sbjct: 253 VWTYSFQPGADIYPEDAVFTPEGIRGTLVTPVGRAAFTSPLVGQFNLANLLAAVGATLAL 312 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GID + L VPGR E V + + VDYAHT + L +L+ R GR+I Sbjct: 313 GIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAVIVDYAHTPDGLRKLLEATRPFVRGRLI 372 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-- 443 VFGCGGDRD+ KRP MG+IA +L+D+ +VT DNPR+E+PE I +I+ GIP + Sbjct: 373 CVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSDNPRTENPEAILDDILAGIPVGVSPTVE 432 Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R AI A+ D +V+AGKGHE I+ G K+ D Sbjct: 433 VDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL--GTTKIHFD 473 >gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 487 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+A+ Sbjct: 1 MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 55 GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + ++ S+ F++ ++ + + + PL Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N L A G + +G +L L +L GR + +G + + VDYAHT + Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAA 411 Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A+I G F+ +R EAI I DV+++AGKGHE Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457 >gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermaerobacter subterraneus DSM 13965] Length = 500 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 178/480 (37%), Positives = 255/480 (53%), Gaps = 53/480 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I ++ DSR ++ G++FVAI G + DGH FI +A+A+GA A+V +L+ Sbjct: 22 RPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVARGAAAVVGERPLALE------- 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144 P + V ++R L L AS YG HP L + G +G + + ++ + + G + Sbjct: 75 -GVPYVQVPSSRLALGLLASAFYG-HPSASLVMVGVTGTNGKTTTTHLIRWVLEAGGHPT 132 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + I+ + TTP L K L+ + +G+TH +E SSH L R+ G Sbjct: 133 GLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHAVMEVSSHALALQRVAGCA 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYADDAYSK 254 G FTNL +DH+D+H + + Y AK RLF L E P A+I ADD + + Sbjct: 193 FDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGTTKPGPKAAVINADDPWGE 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305 + R++ V++ G L + I +QV + G F + P Sbjct: 253 FMAARSN---APVVTYG-------LNRPADI-TARQVEVEPGGIRFILVSPKGEAPVRLR 301 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYA 363 L G F VYNAL AAG +A+G+D A V LE L VPGR E + RG + VDYA Sbjct: 302 LTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERI---DRGQPFAVIVDYA 358 Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 HT + L+ +L+++R + GR+I VFGCGGDRD+GKRP MG I+ LAD ++T DNPRS Sbjct: 359 HTPDGLDNVLRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISARLADYTVLTSDNPRS 418 Query: 423 EDPEKIRAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EDPE I +I G +PG + +R AIR A+E+ DV+V+AGKGHE I + Sbjct: 419 EDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVVIAGKGHEDYQIFAD 478 >gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Trichodesmium erythraeum IMS101] Length = 509 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 165/492 (33%), Positives = 255/492 (51%), Gaps = 18/492 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL++L+ K ++ +S+ Q E +I ++++S Q G +F+ + G + DG F Sbjct: 11 MKLRELLAK-----VSSISLTNNYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDF 65 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENIL 118 AIA GA +VS + + + + ++ I V D ++ + A+ Y ++ Sbjct: 66 WKSAIANGAVGAIVSVSAATKHPA---KNECVIPVADMSQTCPEIAAAFYDYPGQKMKMV 122 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ V+ I + L + G F + TT P+ L L+ Sbjct: 123 GITGTNGKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQA 182 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G + +E SSH LDQ R+ G FTNL +DH+DYH+ YF AK RLF Sbjct: 183 LAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSD 242 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K AI+ ADD Y ++++ R + S + + + + Sbjct: 243 YLK-GRAIVNADDPYGQKLIARLESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPK 301 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356 + F PL G++ + N L A G + +G+D ++V+ L VPGR E V T + Sbjct: 302 GEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDV 361 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +L+D+A+V+ Sbjct: 362 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELSDLAVVS 421 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+EDPE+I +I+ GI ++ +R EAIRTAI D +++AGKGHE Sbjct: 422 SDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKGHEDYQ 481 Query: 474 IVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 482 IL--GTEKIHFD 491 >gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 492 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 243/483 (50%), Gaps = 50/483 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D + G +F+A+ G+ E G + A+A+GA A++V SA + + V Sbjct: 31 DVGRVTPGSLFIAVPGHGEGGPGSVGPALARGAAAVLVDGGAPDLPMSA---AGVCAVSV 87 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +TR ++ ASR +G +++A+TGT+GK+SV+ V+ + + S +G T Sbjct: 88 PDTRTAAAVVASRYFGAPGRQMDMVAITGTNGKTSVSYMVESVLRLS--EGATVGVIGTA 145 Query: 154 SSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 S D LTTP L L + +G V +EA+S L HR+D + Sbjct: 146 GSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRGAGSVVLEATSMALLTHRVDCAFIDV 205 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+D H T + Y +AK+RLF+ L + A++ ADD AG + Sbjct: 206 GVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPV---------GAGIQ 253 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV---------EGKDFDFLFPLPGEFQVYNALV 317 + G + L A + ++T+ +G+ + P+PG + V NAL Sbjct: 254 AMMPGAVTTY-GLDTEAADYRATELTVDASGTRFVLHHDGRKYPAAIPVPGRYSVANALA 312 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 C A+G D ++ L+++ VPGRFE T RG + VDYAH+ +SL+ +L IR Sbjct: 313 TVAACHALGHDLGGLVAALDRMPPVPGRFERFRT-PRGTSVIVDYAHSPDSLDKVLTTIR 371 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR+I VFGCGGDRD KR MG+IA +D+ I+T DNPR+EDPE I +I P Sbjct: 372 GFAPGRVITVFGCGGDRDTTKRAEMGEIAGTHSDLCILTSDNPRNEDPEAILDQI---TP 428 Query: 438 GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDII 489 G G +R AI A+ D++++AGKG E IV GEK + D + Sbjct: 429 GLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAGKGSEPHQIV--GEKLLPFSDMATV 486 Query: 490 REI 492 RE+ Sbjct: 487 REL 489 >gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAb1] gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa C3719] gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa LESB58] gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa 39016] Length = 487 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 234/468 (50%), Gaps = 19/468 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+A+ Sbjct: 1 MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 55 GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + ++ S+ F++ ++ + + + PL Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N L A G + +G +L L +L GR + +G + + VDYAHT + Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411 Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A+I G F+ +R EAI I DV+++AGKGHE Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457 >gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anabaena variabilis ATCC 29413] gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anabaena variabilis ATCC 29413] Length = 496 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 169/497 (34%), Positives = 247/497 (49%), Gaps = 28/497 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++ + P + ++ + ++S AG +F+ + G + DG F Sbjct: 1 MKLRELLAT-----VDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPE 115 P AIA GA A +VS + N P ++ +N K + A+ YG + Sbjct: 56 PSAIASGAIAAIVSPQ--------AVEKNPPSDEAVVISSNNMTKACAAIAAAFYGYPGQ 107 Query: 116 NILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172 + V T + ++ ++ LS+ +G T F Q TTP + L + Sbjct: 108 KLKLVGVTGTNGKTTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQ 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + G +E SSH L Q R+ G G F+NL +DH+DYH + YF AK Sbjct: 168 QLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKAL 227 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF K AII ADD Y + ++K SV + + + N T Sbjct: 228 LFSPDYLKGR-AIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I D F PL G++ + N L + G + +G+D L+ + + VPGR E V N Sbjct: 287 IHTPEGDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQIN 346 Query: 353 -SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +LAD Sbjct: 347 PDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELAD 406 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468 +A VT DNPR+EDPEKI +I+ GIP ++ G+R AIRTAI D +++AGKG Sbjct: 407 LAFVTSDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466 Query: 469 HETVHIVTNGEKKMSVD 485 HE I+ G +K+ D Sbjct: 467 HEDYQIL--GTEKIHFD 481 >gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. ATCC 51142] Length = 511 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 253/493 (51%), Gaps = 19/493 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + P I+ L P ER + +S++S Q G IF+ + G + DG F Sbjct: 16 MKLHDLL-NNVPS-ISSLPNHPA--LERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFW 71 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117 A+ GA A ++S + + F T + +++VD+ + A+ Y +P N+ Sbjct: 72 QSAMEVGATAAMISPQ-AAEKFPPT--DDHCVMIVDDLITVAAEVAAAFY-HYPAQQLNM 127 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ + + IG T F Q TTP L + L+ Sbjct: 128 IGVTGTNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAE 187 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 S + +E SSH L Q R+ FTNL +DH+D+H+ + YF AK LF Sbjct: 188 AVSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTP 247 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +E AII DD Y K +++ SVG + + + N T+ Sbjct: 248 DYLQEK-AIINLDDPYGKRLIESLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTP 306 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +F PL G+F + N L A + +G+D ++E L VPGR E V N + Sbjct: 307 LGTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQD 366 Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE LK R G++I VFGCGGDRD+ KRP+MG+ + +LAD+++V Sbjct: 367 ITVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELADVSVV 426 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP +E +R EAI+TAI D +++AGKGHE Sbjct: 427 TSDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKGHEDY 486 Query: 473 HIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 487 QIL--GTEKIHFD 497 >gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 496 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 244/489 (49%), Gaps = 36/489 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR + G +F A+ G + DGH F +A +GA A+V + Sbjct: 21 EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPVECAPARLLLAP 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + F A RL + AVTGT+GK++V +++ + C R+ ++ +G Sbjct: 81 SARRAMALAAASFHGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 131 Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TIS F +R TTP + L+ + + G +E SSH L Q R+ GI+ Sbjct: 132 VLGTISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEVSSHALAQERVAGIRF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH+ AYF AK RLF E L A+I A D + + + G Sbjct: 192 QAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 250 Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 RV G + G + +V T PL G+ + N L AAGL + Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 310 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ V L H PGR E + + RG ++VDYAHT ++L ++ +R ++ R Sbjct: 311 GLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 368 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 +I VFGCGGDRD+GKRP+MG A AD+AIVT DNPR+EDP I A+++ G+ Sbjct: 369 LICVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPS 427 Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G++ + +R AI A+E + D ++VAGKGHE V EK+ D Sbjct: 428 LGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAEKRPFSDR 486 Query: 487 DIIREILGL 495 D R+ LG+ Sbjct: 487 DEARKALGI 495 >gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 495 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 240/462 (51%), Gaps = 21/462 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ ++ + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256 Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V G+ G+++ + V + + D + L G F V N L+A Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 317 ATLLALGYPLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 433 LDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. PCC 7002] gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp. PCC 7002] Length = 499 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 246/485 (50%), Gaps = 30/485 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I L+ PM ++ + ++S+S+ + G +F+ + G + DG F Q + V Sbjct: 14 IESLADHPM--LQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFW-QGAIEAGAIAAVV 70 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVAS 131 S +L+ F AT + I V D + + L+ + P ++ VTGT+GK++ + Sbjct: 71 SPEALEKFPAT-KGECVIPVADPVIACAEI--ANLFYEKPTASLKLVGVTGTNGKTTTSH 127 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 ++ Q + + IG T + + TTP I L K + G TH +E S Sbjct: 128 LIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNTHAVMEVS 187 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH L Q+R+ G + FTNL +DH+DYH T + YF AK LF E A++ D+ Sbjct: 188 SHALHQNRVKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEY-CHGRAVVNLDN 246 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLF 304 Y + AH G + Q L I+ VEG+ +F Sbjct: 247 PYGDRL---AHKLGEKAWGYSLQDAAADLYMDRLIYT----ATGVEGRLKTPMGTVEFTS 299 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYA 363 PL G+F + N + A G +A+G+D ++ L + VPGR E + + + VDYA Sbjct: 300 PLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVIVDYA 359 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT +SLE +LK R + ++I VFGCGGDRD+ KRP+MGKIA +D A+VT DNPR+E Sbjct: 360 HTPDSLENLLKASRPFIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVTSDNPRTE 419 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP++I A+++ GIP F+ + +R AI+ AI D +++AGKGHE I+ G + Sbjct: 420 DPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQIL--GTE 477 Query: 481 KMSVD 485 K+ D Sbjct: 478 KIHFD 482 >gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae SCF1] Length = 495 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 239/469 (50%), Gaps = 29/469 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVA++G++ DG +IPQAIAQG AI+ + D Sbjct: 19 ERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HQPSGRLRLVGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + LS L+ QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLAAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + ++ A FTNL RDH+DYH + Y AK L+ + AII ADD + + Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIINADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A + + G+++ V + + + + + L G F V N Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFASSWGNGEIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A +A+G A +L +L V GR E + + VDYAHT ++LE L+ Sbjct: 312 LLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFAAPGKP-TVVVDYAHTPDALEKALQ 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P I +I Sbjct: 371 AARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIITDI-- 428 Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ AI + DV++VAGKGHE IV N Sbjct: 429 -LAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella drancourtii LLAP12] Length = 483 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 233/463 (50%), Gaps = 45/463 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIR 87 I + +DSR IQ G +FVA G+ DG LFI A+ A V+ Y +F + Sbjct: 20 ITGMQNDSRLIQPGDLFVAYPGSAADGRLFI----AKAVSAGAVAVVYEPANFPIDGVLP 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ P + V + L+ A Y PEN I +TGT+GK+++A + Q G + Sbjct: 76 TSIPCIAVPDLATKLAYIAKAFYDD-PENSLTITGITGTNGKTTIAYQLAQAHHLLGQGA 134 Query: 145 FQIGP--TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG ++ DN TTP + L K L QG+ V +E SSH L QHR+D Sbjct: 135 AYIGTIGQGNVNELQPLDN--TTPDSLRLQKLLHQYKEQGLKQVCMEVSSHALAQHRVDA 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKR 259 + FTNL DH+DYH + Y AK LF E L AII DD Y ++VM Sbjct: 193 LTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGESL----QWAIINQDDEY-QQVMAA 247 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEF 310 A + L+ G L++ C + + + G + D P G F Sbjct: 248 ALKPHVKKLTYG-------LREDCDV-KAVNWRMDINGTEIDVHSPWGQHHLRIKALGAF 299 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +YN+L +A G V+ + +L PGR E V + + VDYAHT ++LE Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVAS---APYVLVDYAHTPDALE 356 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L + I GR+ VVFGCGGDRD+ KRP+MGKIA AD I+T DNPR+EDP+ I Sbjct: 357 NALVTLGQIKKGRLWVVFGCGGDRDKSKRPMMGKIASLNADKIIITSDNPRTEDPQTIIE 416 Query: 431 EIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EIIHGI P ++ NR EAI A+E N D++++AGKGHE Sbjct: 417 EIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKGHE 459 >gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 491 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR ++ G +FV + G D H F QA AQGA AIV Sbjct: 6 LLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + GV +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DDA + E M+ + V++ G I K + T+ + + Sbjct: 237 VLNNDDAVTAEYMR---STAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ V++ +++L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV----DGGQNYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +LK + G + + GCGGDRD+ KRPIM +A A AI T DNP Sbjct: 350 DYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSE+P I +++ G G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHETYQII 466 >gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Ralstonia solanacearum CFBP2957] Length = 514 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 237/486 (48%), Gaps = 34/486 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI GA A++ + + A +R Sbjct: 32 DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYVVPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 +L VD + A++ Y G ++ VTGT+GK+S + ++ Q R G Sbjct: 92 ----VLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + TTP I L ++L L G V++E SSHGL+Q R DG Sbjct: 148 AVVGTLGTGFVDTLVATG-FTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +DH+DYH T Y AK RLF P A+I DDA ++ Sbjct: 207 RFDIALFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLT-GLR 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313 A + G G+ + V G FD P+ G F V Sbjct: 264 ADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVS 323 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G+ + G+ + LEKL V GR E G G + VDYAHT ++LE L Sbjct: 324 NQLGVLGVLLMAGVSWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP++I Sbjct: 383 CALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILD 442 Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I G+ ++ +R AI A+ + DV+VVAGKGHE+ T G K+ D + Sbjct: 443 MIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQ-ETAGRKRPFSDQE 501 Query: 488 IIREIL 493 +R L Sbjct: 502 HVRLAL 507 >gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 185-1] gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 45-1] gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Escherichia coli MS 153-1] Length = 471 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 167/476 (35%), Positives = 243/476 (51%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q S L +G S + Sbjct: 64 SQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----LGEPSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AII ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQ--AIINADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G+++ V + + S D + L G F V N L+A + Sbjct: 237 MEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLADLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ G+ + Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAK 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV N S + R +LG+I Sbjct: 416 VMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 470 >gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pedobacter saltans DSM 12145] Length = 486 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 158/487 (32%), Positives = 250/487 (51%), Gaps = 39/487 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I+++ DSR + G +FVAI G + DGH F+ GA+A +V + I Sbjct: 21 EIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAKAAIVET------LPEVI 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + V N+ L + AS Y +P + ++ VTGT+GK++V + + ++ ++ G Sbjct: 75 AEGVTYIKVANSATALGVVASNFY-HNPSSKLKLVGVTGTNGKTTVCTLLYKLFKKLG-- 131 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + +G ST+ ++ D + TTP I L + L+ + G + +E SSH + QHR+ Sbjct: 132 -YNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVDAGCEYCFMEVSSHSVVQHRI 190 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK- 258 DG++ G FTN+ DH+D+H+T Y AK F+ L K + A+ DD +++ Sbjct: 191 DGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSK-AFALTNVDDRNGNVMLQN 249 Query: 259 -RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 RAH + +V ++ K I +H + ++G + F L G F YN L Sbjct: 250 TRAHKKTYALNAVADFKAKIIE-NLFSGLH------LDIDG--MEVYFRLVGSFNAYNLL 300 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + + D VL L L GRF+++ ++ I VDYAHT ++L IL I Sbjct: 301 AVYGTALLLEQDRTKVLTVLSMLTGAEGRFDYIIAPNKVIGI-VDYAHTPDALRNILSTI 359 Query: 377 RTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I+SG II V GCGGDRD+ KRPIM + A D + I+T DNPR+E PE I +++ Sbjct: 360 ENISSGTESIITVVGCGGDRDREKRPIMAQTACDWSHKVILTSDNPRTEKPEDILNDMLA 419 Query: 435 GIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ +K +R EAI+ A + D++++AGKGHE + NG + D I+ Sbjct: 420 GVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKGHEKYQEI-NGVRTDFDDKQIL 478 Query: 490 REILGLI 496 E L+ Sbjct: 479 TEQFNLL 485 >gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Anaeromyxobacter dehalogenans 2CP-C] Length = 504 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 243/489 (49%), Gaps = 36/489 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR + G +F A+ G + DGH F +A +GA A+V + Sbjct: 29 EITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPVECAPARLLLAP 88 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + F A RL + AVTGT+GK++V +++ + C R+ ++ +G Sbjct: 89 SARRAMALAAASFCGRPAERL------RMAAVTGTNGKTTV-TYLVEACARA--AAVPVG 139 Query: 149 PTSTIS-SFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TIS F R TTP + L+ + G +E SSH L Q R+ GI+ Sbjct: 140 VLGTISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEVSSHALAQERVAGIRF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH+ +AYF AK RLF E L A+I A D + + + G Sbjct: 200 QAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL-GPG 258 Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 RV G + G + +V T PL G+ + N L AAGL + Sbjct: 259 PRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 318 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ V L H PGR E + + RG ++VDYAHT ++L ++ +R ++ R Sbjct: 319 GLGLPPEAVARGLAASHGAPGRLERI--DGRGLSVFVDYAHTDDALARMIAALRGLSPRR 376 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436 ++ VFGCGGDRD+GKRP+MG A AD+AIVT DNPR+EDP I A+++ G+ Sbjct: 377 LVCVFGCGGDRDRGKRPLMGAAAA-AADLAIVTSDNPRTEDPLAIIADVLPGLDRAGKPA 435 Query: 437 ----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 G++ + +R AI A+E + D ++VAGKGHE V E++ D Sbjct: 436 IGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKGHEDYQQV-GAERRPFSDR 494 Query: 487 DIIREILGL 495 D R+ LG+ Sbjct: 495 DEARKALGI 503 >gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens DSM 2638] Length = 486 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 148/477 (31%), Positives = 250/477 (52%), Gaps = 36/477 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G +FVAI G DG F+PQA+ +GA IV ++ SA + S+ Sbjct: 24 VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEK--EVETGSAELISHP-- 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150 + R+ L A + I V T + ++Q+ +G+ ++G Sbjct: 80 ----SPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGM---KVGVL 132 Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+S + Q+ LTTP L + L+ + GV +E SSH L Q+R+ G+K A Sbjct: 133 GTVSYRWPGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDA 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ +DH+DYH + YF AK LF+ II DD + + +++ C Sbjct: 193 AVITNVTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLE------CY 246 Query: 267 VLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++GY K + + V + ++ ++ +G+ ++ L G+F N L A Sbjct: 247 SPAIGYGMDASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAA 306 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + +G+ + + ++ VPGR E V N +G I+VDYAHT ++L+ +L+ ++ Sbjct: 307 QAIGLHMGL-TPKQMNVFKEFDGVPGRLERV-RNDQGLNIFVDYAHTPDALDNVLRTLKD 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + ++I VFGCGGDRD+ KRP+M + A +D+A++T DNPR+EDP +I + G+ G Sbjct: 365 LDFNKVITVFGCGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKG 424 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 IE+ +R +AIR A+ + + DVL++AGKGHET I+ ++ S ++++ I Sbjct: 425 CDHVIEEVDRADAIRKAVAEMTEDDVLLIAGKGHETYQIIGTEKRDFSDSEEVLKAI 481 >gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 168/487 (34%), Positives = 246/487 (50%), Gaps = 30/487 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E + DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 19 RALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREX 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q S L + Sbjct: 79 HGVPVIYLSQLNERLSALAGRFY-HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQL----L 133 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G S + + L TT S + + L+ L QG T + E SSHGL QHR+ Sbjct: 134 GEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAXEVSSHGLVQHRV 193 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y A L+ E + AII ADD + + + Sbjct: 194 AALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQ--AIINADDEVGRRWLAK 251 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A ++ G+++ +V + + S D + L G F V N Sbjct: 252 LPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLXGAFNVSNL 311 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G A +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 312 LLALATLLALGYPLADLLKTAARLQPVCGRXE-VFTAPGKPTVVVDYAHTPDALEKALQA 370 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+ G IA + AD+A+VTDDNPR+E+P I +I Sbjct: 371 ARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAVVTDDNPRTEEPRAIINDI--- 427 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N S + Sbjct: 428 LAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVA 487 Query: 490 REILGLI 496 R +LG+I Sbjct: 488 R-LLGVI 493 >gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202] gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella tarda FL6-60] Length = 469 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 171/483 (35%), Positives = 243/483 (50%), Gaps = 38/483 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG+ DG FIPQAIAQG A++ + +D S P++ + Sbjct: 2 DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + LS A R YG+ P L + G +G + + Q + Q + L +G T + Sbjct: 62 SHLNERLSALAGRFYGQ-PGADLRLVGVTGTNGKTTTTQLLAQWAQL----LGETGAVMG 116 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L+ G T V++E SSHGL Q+R+ + A Sbjct: 117 TVGNGLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAAS 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL RDH+DYH + Y AK RLF E II ADD + + + +A Sbjct: 177 AFTNLSRDHLDYHGDMEHYAQAKWRLFSTHHSGEK--IINADDETGRRWLDKLPDAVAVT 234 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LPGEFQVYNAL 316 +S G+ G+++ + V ++ TI+ FD + L GEF V N L Sbjct: 235 VSGALPAGWAGRWLAARSVA--YHDGGATIA-----FDSCWGAGTLNSRLMGEFNVSNLL 287 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA +A+G A + +L V GR E + + VDYAHT ++LE L Sbjct: 288 VALATLLALGYPLAALCAASGQLQPVCGRMEVFQAPGKP-TVVVDYAHTPDALEKALLAA 346 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R G + +FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+P I EI+ G+ Sbjct: 347 RLHCQGLLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGM 406 Query: 437 --PGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 PG + R EA+ A+ QDV++VAGKGHE +V N S + R +L Sbjct: 407 LDPGLAMAIPGRAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LL 465 Query: 494 GLI 496 G++ Sbjct: 466 GVV 468 >gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Porphyromonas gingivalis ATCC 33277] Length = 487 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 237/463 (51%), Gaps = 41/463 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+++++++SDSR G +FVA+ G DGH +IPQA QG A VV +D Sbjct: 20 EQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVV------EDLPDEK 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 + V +T + L+ AS YG HP ++ VTGT+GK++VA+ + ++ ++ G Sbjct: 74 PEGCCFVQVSDTAEALASLASAYYG-HPSRHLTLVGVTGTNGKTTVATLLYRLFRKMG-- 130 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ G ST+ ++ D TTP P+ L ++ G + +E SSH Q R+ Sbjct: 131 -YKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQKRI 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + G FTNL RDH+DYH + Y AK F+ L ++ A++ ADD K + Sbjct: 190 GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDG-LGAQAFALVNADD---KNGLVM 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYN 314 N RV + + + K+ H ++G D + L G+F YN Sbjct: 246 VQNTRARVCTYALKSMANYRAKIVERH--------IDGMDMYMDDREVFVRLVGDFNAYN 297 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G +G D VL L +L V GRF+ T+ G VDYAHT ++L +L Sbjct: 298 LLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYVAIVDYAHTPDALVNVLD 356 Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 IR + S ++I V G GG+RD+GKRPIM K A ++ I+T DNPR E+P++I E+ Sbjct: 357 TIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEIIQEMA 416 Query: 434 HGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ K +R EAIRTA + K D +++AGKGHET Sbjct: 417 IGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459 >gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 464 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 238/457 (52%), Gaps = 25/457 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNK--EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 N S+D+R ++ IF + G+K +DG F + I + +L S Sbjct: 11 NNCSADTRTLRKSEIFFDL-GSKSNKDGDYFFKALKKKPLFIITQNQKRNL--------S 61 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++V N F S + K P+ +AVTGT+GK+SVA F +I G+ ++G Sbjct: 62 GKNFIIVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGI---KVG 118 Query: 149 PTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ F + LTTP K L++ + + H +EASSHGL Q+RL+ I Sbjct: 119 SIGTLGVFENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINF 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FTNL DH+DYH+T + Y N+K+ LF++L+ K + ++ + K + N Sbjct: 179 DCGIFTNLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKK 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +LS G +G I + + + N Q ++ I++ GK L G FQ+ N L A C Sbjct: 239 LNLLSYGRKGNIIKI--ISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLAC 296 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + GI + ++ PGR + ++ + +DYAHT ++LE + I+ + Sbjct: 297 YSSGISFEKIFRICSRIDNPPGRLQLFKKQNKT--VIIDYAHTPDALEKTIIEIQKFFNK 354 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 +I +VFGCGGDRD KR MGKIA L + +TDDNPR E+ KIR +I G P I Sbjct: 355 KINIVFGCGGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVV 414 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +R +AI+++I MLN +++L++AGKGHE ++ N + Sbjct: 415 PSRKQAIKSSISMLN-EEILLIAGKGHEEFQLIKNKK 450 >gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chromohalobacter salexigens DSM 3043] Length = 509 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 165/484 (34%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 24 QWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +WR +R+ V+ DSR G +FVA+ G DG F+ QA+ G EA V+ A +L Sbjct: 27 EWRPQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEA-VLCEAEALP-- 83 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141 ++ +L V R L ++ ++ VTGT+GKSSV ++ + + G Sbjct: 84 TSVPEQEARVLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAALSEALG 143 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG + RLTTP P+ L AL LS++GV V++E SSH L+Q R+ Sbjct: 144 TPAAVIGTLGVGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVT 203 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G + A +TNL RDH+DYH + AY AK RLF+ + + A++ DD S +M Sbjct: 204 GCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHR--ELALAVVNGDDRLSP-LMLAG 260 Query: 261 HNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G RVL+ G Q + + Q+ I+ + + L G F + N L+A Sbjct: 261 LAKGVRVLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAI 320 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTS----NSLEMILK 374 +G + + +L VPGR + V N+ + VDYAHT N+LE + Sbjct: 321 ATLYGMGAELNALFSAAARLAPVPGRMQRLVAENAP--TVVVDYAHTPDALRNALEALRA 378 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ + ++ VFGCGGDRD+GKRP+M + A LAD +++DDNPR E IR EI Sbjct: 379 HLPSSDGAKLWCVFGCGGDRDRGKRPLMAQAAEALADRLVISDDNPRGEPAAAIRDEIAA 438 Query: 435 GIP--GFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ G G R EAI ++ + D++++AGKGHET + GE+ D DI Sbjct: 439 GLSTDGRARAECMGGRREAIEWTLDAAGEHDIVLIAGKGHETYQEIA-GERHPFSDIDIA 497 Query: 490 REIL 493 RE L Sbjct: 498 REAL 501 >gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135] Length = 485 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 154/482 (31%), Positives = 249/482 (51%), Gaps = 39/482 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N + DSR ++ G++FVA+ G + DGH +I +AI GA IV + I S Sbjct: 22 EVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENGATVIVC------EQLPVQIES 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N + + +T + + A+ YG + + VTGT+GK+++A+ + + + L ++ Sbjct: 76 NVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTIATLLYNMFR---LFGYK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G ST+ ++ + TTP PI L + L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 AGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFMEVSSHSVVQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTN+ RDH+DYH+T + Y AK F+ LPK++ A+ DD + VM + Sbjct: 193 TFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDN-LPKQAFALTNLDDK-NGTVMTQNTQ 250 Query: 263 AGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A S+ ++GK + + + + + ++ + F G F N L Sbjct: 251 AKVAAYSLHSLCDFKGKVLE-------DSFDGMLLDINNREVNVQF--IGRFNASNLLAV 301 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +G +L L L V GRF+ + +G VDYAHT ++L +L+ I Sbjct: 302 YGAACLLGKRPEDILVKLSMLRPVSGRFD-AKRSPKGYTAIVDYAHTPDALVNVLEAIHE 360 Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + GR +I V G GG+RD+GKRP+M K + +D I+T DNPR E+P+ I +++ G+ Sbjct: 361 VLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVIITSDNPRFEEPQDIINDMLAGL 420 Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I +R EAIRTA + QDV+++AGKGHET V G K D +++ E Sbjct: 421 SKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKGHETYQDV-KGVKSHFDDKEVLDE 479 Query: 492 IL 493 I Sbjct: 480 IF 481 >gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [gamma proteobacterium NOR5-3] Length = 491 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 163/461 (35%), Positives = 242/461 (52%), Gaps = 34/461 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F+A+ G+ +DG F+ QA A GA A +V L+ S P++V+ Sbjct: 34 DSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLR------LSPLPMVVI 87 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 N R L A R + + P +I AVTGT+GK++V+ ++ + G IG + Sbjct: 88 PNLRHRLCEIAGRFF-REPSREMHIAAVTGTNGKTTVSQLFARLVRSVGYDCGVIGTLGA 146 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ + TTP I L + L+ + Q V VS+E SSH L Q R++ + + FTN Sbjct: 147 SLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHALHQGRVNTLDIDTAIFTN 206 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH Q+Y AK RLF AI+ ADD +S+ + +R G VL G Sbjct: 207 LTRDHLDYHGDMQSYGEAKARLFA--FESLRTAILNADDPFSRHLAQRVPT-GVSVLRYG 263 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVAAGLC 322 + ++ + +S G F F PL G+F N L A Sbjct: 264 IEDSTAEVRL-------SHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAVNLLAALTAA 316 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + G+ V+E +E L VPGR E + G + +DYAHT ++L +L +R G Sbjct: 317 LQAGLPFKAVMEAVESLASVPGRMEPLRVAG-GPLVVIDYAHTPDALRQVLLTLREQCQG 375 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIE 441 +I VFGCGGDRD+GKRP+M + AD A++T DNPRSE+P I A+I + G ++ Sbjct: 376 SLIAVFGCGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIADIQASMKGDYLV 435 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +R EAIR AIE +D +++AGKGHE IV G++++ Sbjct: 436 CADRAEAIRLAIESAGAKDCVLIAGKGHEDYQIV--GQERL 474 >gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 552 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 162/503 (32%), Positives = 250/503 (49%), Gaps = 66/503 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSAT 85 R+++ V++DSR +FVA+ G + DGH +I A+A+G I+ + Q + Sbjct: 25 REVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGL 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 L +TR+ L + L G HP ++ +TGT+GK++ A ++ + G Sbjct: 85 AGEAVLCLSTPDTREALGWLCAALQG-HPARSLLLIGITGTNGKTTCAYLLEALIASGG- 142 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 Q G T++ + + TTP P L L+ + GVTHV +E SSH L Q R Sbjct: 143 --GQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRR 200 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 + G++ FTNL R+H+DYH ++YF AK RLFE+ L P + + A+ A + + Sbjct: 201 VAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQ 260 Query: 258 KRAHN-AGC----------------------------RVLSVGYQGKFIHLKKVCAIHNK 288 KRA + AGC R+ G+ + L + N Sbjct: 261 KRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNG 320 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347 + ++ +++ PL G+F + N L A +A+ + + L PGR E Sbjct: 321 IKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLALEMSPEAIAAALAVAPPPPGRLER 380 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 FV + RG +++VDYAHT +LE +L+ +R S R+IV+FGCGGDRD+GKR MG+IA Sbjct: 381 FV--DRRGMKVFVDYAHTPAALEQVLRTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAG 437 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML------ 456 LADI ++T DNPR+E+P I A I G+ G + R+EA+ R ++L Sbjct: 438 RLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRA 497 Query: 457 --------NKQDVLVVAGKGHET 471 + DV+V+ GKGHET Sbjct: 498 IAETIFFADAGDVIVLCGKGHET 520 >gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halorhodospira halophila SL1] gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Halorhodospira halophila SL1] Length = 503 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 238/458 (51%), Gaps = 27/458 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD------- 81 I ++ D+R ++ G +F+A+ G+++ G ++P A+ GA A+V + QD Sbjct: 27 SIQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVV----WDPQDEVDPGAA 82 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 +AT +S P++ V R+ L A RLYG ++AVTGT GK+SV+ F+ Q+ Sbjct: 83 RTATEQSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLL-- 140 Query: 140 SGLSSFQIGPTSTIS-SFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 SG + G T+ D R LTTP L KAL+ + G T V++EASSH L+ Sbjct: 141 SGPEA-PWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALE 199 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q RL G + T+LGRDH+DYH + +AY +AK RLFE P ++ DDA + Sbjct: 200 QGRLAGTAVDLAVLTHLGRDHLDYHGSVEAYADAKSRLFE--FPSLRAQVLNLDDALGRR 257 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + RA A S + + V + Q+T+ V G PL G F V N Sbjct: 258 LHDRAAGAAF-TYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANV 316 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A +A+G VL L L VPGR E F S + VDYAHT +LE L Sbjct: 317 LAAVAAALALGRPMDGVLARLPTLRPVPGRMEQFHADGSP--LVVVDYAHTPGALEQALT 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEII 433 +R T+GR+ VVFGCGG+RD GKRP+MG++A LAD ++TDDNPR ED A Sbjct: 375 ALRAHTTGRLCVVFGCGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAVIRAAVAA 434 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G R AI AI DV+++AGKGHET Sbjct: 435 GAGEGAEVVAGRGVAIGGAIAWGAPGDVVLIAGKGHET 472 >gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Salinibacter ruber DSM 13855] Length = 522 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 167/481 (34%), Positives = 239/481 (49%), Gaps = 36/481 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + G FVAI G DGH FI A+ GA +V + R Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEA------LPTRARER 115 Query: 90 TPILV---VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG--- 141 P +V V +TR L+ A+ L+G + + + VTGT+GK++VA V + + G Sbjct: 116 FPGVVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETA 175 Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 LS+ ++ ++ A LTTP P+ L + L + +G T ++E SSH LDQ R+ Sbjct: 176 GLLSTIKVQAGGETTALA----LTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRV 231 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G+ FT L DH+DYH T Y AK LF+ L P ++ A+ ADD ++ Sbjct: 232 HGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNADDEAGPTMVA- 289 Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + RV+S G + I + A + Q+V + +D L G F N A Sbjct: 290 --DTEARVVSFGLDRDADIEATVLEARLDGQRVRLDGHERDTQ----LAGRFNASNMAAA 343 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G A+G V + L VPGR E + G + VDYAHT ++LE +L+ +R Sbjct: 344 YGTGTALGHAPEAVADALADAPPVPGRVEPLRFGD-GTTVIVDYAHTPDALENVLRTVRD 402 Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 T + + VFGCGGDRD GKRP MG+IA LAD IVT DNPR+E P I +I G+ Sbjct: 403 TTPAKAALWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDICDGV 462 Query: 437 --PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R EAI+ A + DV+V+AGKGHET + + D ++ R Sbjct: 463 ERPESMRWIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTRPFD-DREVARRYF 521 Query: 494 G 494 G Sbjct: 522 G 522 >gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola 5H-3-7-4] Length = 487 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 248/484 (51%), Gaps = 57/484 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +SR + +FVAI G+ DGH +I AI QGA A+V + T++ +VV Sbjct: 30 NSRSVAVNDLFVAIKGSVVDGHDYIENAIKQGAIAVVC------EYLPKTLKEGISYIVV 83 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +++ L++ AS YG N+ + VTGT+GK+++AS + Q+ +++G +++G ST+ Sbjct: 84 EDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTTIASLLFQLFKKAG---YKVGLLSTV 140 Query: 154 SSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 DN+ TTP + + + LS ++++GV +E SSHG+ Q R G+ G Sbjct: 141 V-IKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFMEVSSHGIHQKRTQGLDFAGGI 199 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS------------KEV 256 FTNL DH+DYH+T Y + K F+ L + A+ ADD K Sbjct: 200 FTNLSHDHLDYHETFAEYRDVKKSFFDN-LSSSAFALTNADDKNGAIMLQNTKAKQYKYG 258 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +K N ++L + G + + D D L G F N L Sbjct: 259 LKNYANYKAQILENSFSGMLLKI------------------NDSDVWTRLIGGFNASNVL 300 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +G++ +L + +L V GRF+++ + I VDYAHT ++L+ +L+ I Sbjct: 301 AIYATAELLGLEKTEILRLISELESVSGRFQYLISEENITAI-VDYAHTPDALKNVLETI 359 Query: 377 RTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +I + +I V GCGGDRD KRP MG IA L+ AI T DNPR+E PE I +I Sbjct: 360 NSIRTKNEELITVIGCGGDRDATKRPKMGHIASALSTKAIFTSDNPRTEVPELIIEDIEK 419 Query: 435 GI-PGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ P +K +R +AI+TA ++ N D++++AGKGHET + NGE+ D I+ Sbjct: 420 GVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKGHETYQEI-NGERTDFDDFKIV 478 Query: 490 REIL 493 + +L Sbjct: 479 KNLL 482 >gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderiales bacterium 1_1_47] Length = 488 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 238/470 (50%), Gaps = 25/470 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +F A+ G DG FI +A GA +V D + P++ + Sbjct: 24 DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG----DIGP---CSVPVIEI 76 Query: 96 DNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152 DN + L A+ YG ++ AVTGT+GK++ A+++ + R G IG T Sbjct: 77 DNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCT 136 Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ + +TTP P+ L + L S+G ++EASS GL+Q RLDG ++ FTN Sbjct: 137 LNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTN 196 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV- 270 L RDH+DYH T + Y AK LF P + A+I ++++MK A AG +L+V Sbjct: 197 LTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTVS 254 Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G Q ++ + + + + +G F G F V N L G I++G + Sbjct: 255 AKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFE 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385 VL+ + KL GR + V + G VDY+HT +++ +K + + GRI Sbjct: 315 IETVLKEVAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIW 373 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 +V G GGDRD GKRP+MG+ A AD ++T DNPRSED ++I +I G P + + Sbjct: 374 IVVGAGGDRDHGKRPLMGQAAC-AADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE- 431 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI A E DV++VAGKGHE V G K D + RE L Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEV-KGVKHHFSDVEETREAL 480 >gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri A1501] gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas stutzeri A1501] Length = 487 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 19/468 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +N L P + I E++ DSR ++ G +F+A+ G + DG + Sbjct: 1 MPMPLNHL--LPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGR----DHVQDAIAR 54 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128 + AY + + ++ V + LS A R YG+ N+ + VTGT+GK+S Sbjct: 55 GAAAVAYESEGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ + Q R G IG T + R TTP I + L+ L +G V++ Sbjct: 115 VSQLIAQALDRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ ++ FTNL RDH+DYH T +AY AK RLF +P S +I Sbjct: 175 EVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + + S+ +++ + + + + PL Sbjct: 233 LDDGFGRALAGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N L A G + + +L L +L GR + +G R + VDYAHT + Sbjct: 293 GRFNVSNVLAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRP-LVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L +R GR++ +FGCGGDRD GKRP+M ++A LAD +VTDDNPR+E PE+ Sbjct: 352 ALEKVLTALRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPER 411 Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I ++ G F++ R +AI I N DV+V+AGKGHE Sbjct: 412 ILEDVRSGFVNPEAVTFVQ--GRAQAIARLIAAANASDVVVLAGKGHE 457 >gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 495 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 243/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QGVT ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanobacter sp. RED65] gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Oceanobacter sp. RED65] Length = 490 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 238/472 (50%), Gaps = 23/472 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + +N + DSR ++ G + + D +I QA+ + A ++ YS ++ Sbjct: 25 QTLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEKRAVLVIGEIEYSAHNYCR--- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 V + F + + G + +++ VTGT+GKSS+ +V Q+ S Sbjct: 82 -------VSDVMTFAASVLNHELGSPSQHMDVIGVTGTNGKSSIVFYVAQLLTELRHSCA 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIK 203 +G F D + T + + L + L+ + +++E SSHGL Q RL G+ Sbjct: 135 VMGTLGY--GFWNDLKPTGMTTLPLPRLHQALADVKKDCKAIAMEVSSHGLHQKRLSGVA 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH T AYF+AK LF+E P A+I DD Y K+++ Sbjct: 193 FNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKE--PGLQWAVINQDDDYGKKLLSEP--V 248 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G K +H QQ+ + G++ + PL GEF YNA + Sbjct: 249 SYSSYSYGTDEKSDLHFCITRTTDTGQQLALRFHGQEQEVFLPLLGEFNAYNAAASVLSV 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 IA+G D + + + L V GR E + +N + VDYAHT +++E +LK+ R G Sbjct: 309 IAMGFDFSSACKAVTALRPVSGRMELIDSNDSQPNVLVDYAHTPDAVEQVLKSARKHCKG 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-E 441 ++ + GCGGDRD+GKRP+M + A++ AD ++T DNPRSE PE+I A+++ G+ + Sbjct: 369 NLVCLVGCGGDRDRGKRPLMAQAAINFADSVLLTSDNPRSESPEQILADMVQGLKKEVPS 428 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI++AI D++V+ GKGHE + +G K D + RE L Sbjct: 429 ELDRKQAIQSAILNAKSDDLIVIVGKGHEDYQEI-HGVKYPFSDQETAREAL 479 >gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas gingivalis W83] gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas gingivalis W83] Length = 487 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 237/463 (51%), Gaps = 41/463 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+++++++SDSR G +FVA+ G DGH +IPQA QG A VV +D Sbjct: 20 EQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVV------EDLPDEK 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 + V +T + L+ AS YG HP ++ VTGT+GK++VA+ + ++ ++ G Sbjct: 74 PEGCCFVQVSDTAEALASLASAYYG-HPSRHLTLVGVTGTNGKTTVATLLYRLFRKMG-- 130 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ G ST+ ++ D TTP P+ L ++ G + +E SSH Q R+ Sbjct: 131 -YKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQKRI 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + G FTNL RDH+DYH + Y AK F+ L ++ A++ ADD K + Sbjct: 190 GALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDG-LGAQAFALVNADD---KNGLVM 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYN 314 N RV + + + K+ H ++G D + L G+F YN Sbjct: 246 VQNTRARVCTYALKSMANYRAKIVERH--------IDGMDMYMDDREVFVRLVGDFNAYN 297 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G +G D VL L +L V GRF+ T+ G VDYAHT ++L +L Sbjct: 298 LLCVYGASCELGQDREEVLRILSELTSVDGRFQTF-TSKDGYVAIVDYAHTPDALINVLD 356 Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 IR + S ++I V G GG+RD+GKRPIM K A ++ I+T DNPR E+P++I E+ Sbjct: 357 TIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEIIQEMA 416 Query: 434 HGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ K +R EAIRTA + K D +++AGKGHET Sbjct: 417 IGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459 >gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii SDF] gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii] Length = 499 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ + S DSR ++ G IF+A+ E F A+A GA A++ + + + Sbjct: 16 QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304 A++ ++K A N + + Y L + A + ++ S+ G F+ + Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463 >gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Azotobacter vinelandii DJ] gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii DJ] Length = 487 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 245/473 (51%), Gaps = 29/473 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL P I E++ DSR ++ G +F+A+ G ++DG IP A+A+GA A Sbjct: 1 MPMPLNQL--LPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAA 58 Query: 71 IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 + +A S D P++ + LS A R YG+ + + VTGT+GK Sbjct: 59 VAYEAAGAPSFAD------GGVPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGK 112 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV+ + Q G IG Q R TTP PI + AL+ L G V Sbjct: 113 TSVSQLLAQALDLLGERCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAV 172 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSH L Q R+ + FTNL RDH+DYH + AY AK RLF P + Sbjct: 173 SMEVSSHALAQGRVSALDFDVAIFTNLSRDHLDYHGSMDAYGAAKARLFA--WPGLRCRV 230 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304 + DD + + + A+ + S+ + +H ++ A ++Q V V + L Sbjct: 231 LNLDDPFGRLLAGEANASRLIGYSLESRSAQVHCRR--AHFDEQGVRAEVATPQGEGLLH 288 Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F + N L G + G+D AL +L + +L GR + +G ++ + VD Sbjct: 289 SPLLGRFNLSNLLAVVGALL--GLDYALDEILRVVPQLQAPAGRMQRLGGGAKP-LVVVD 345 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M +A LAD ++TDDNPR Sbjct: 346 YAHTPDALEKVLEALRPHVRGRLLCLFGCGGDRDRGKRPLMAAVAERLADALLITDDNPR 405 Query: 422 SEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 SE PE+I A+I GI G EK R +AI I + DVL++AGKGHE Sbjct: 406 SESPEQIFADIRSGI-GVPEKVTCLHGRGQAIARLIAGADASDVLLLAGKGHE 457 >gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium MLMS-1] Length = 556 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 162/503 (32%), Positives = 250/503 (49%), Gaps = 66/503 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSAT 85 R+++ V++DSR +FVA+ G + DGH +I A+A+G I+ + Q + Sbjct: 25 REVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVARGCRLILTQRGRRVDQQKLAGL 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 L +TR+ L + L G HP ++ +TGT+GK++ A ++ + G Sbjct: 85 AGEAVLCLSTPDTREALGWLCAALQG-HPARSLLLIGITGTNGKTTCAYLLEALIASGG- 142 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 Q G T++ + + TTP P L L+ + GVTHV +E SSH L Q R Sbjct: 143 --GQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAGVTHVVMEVSSHALVQRR 200 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 + G++ FTNL R+H+DYH ++YF AK RLFE+ L P + + A+ A + + Sbjct: 201 VAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQ 260 Query: 258 KRAHN-AGC----------------------------RVLSVGYQGKFIHLKKVCAIHNK 288 KRA + AGC R+ G+ + L + N Sbjct: 261 KRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNG 320 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347 + ++ +++ PL G+F + N L A +A+ + + L PGR E Sbjct: 321 IKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLALEMSPEAIAAALAVAPPPPGRLER 380 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 FV + RG +++VDYAHT +LE +L+ +R S R+IV+FGCGGDRD+GKR MG+IA Sbjct: 381 FV--DRRGMKVFVDYAHTPAALEQVLRTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAG 437 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI-----RTAIEML------ 456 LADI ++T DNPR+E+P I A I G+ G + R+EA+ R ++L Sbjct: 438 RLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRA 497 Query: 457 --------NKQDVLVVAGKGHET 471 + DV+V+ GKGHET Sbjct: 498 IAETIFFADAGDVIVLCGKGHET 520 >gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ACICU] gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase [Acinetobacter baumannii ATCC 17978] gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2] gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii TCDC-AB0715] gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6014059] Length = 499 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ + S DSR ++ G IF+A+ E F A+A GA A++ + + + Sbjct: 16 QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304 A++ ++K A N + + Y L + A + ++ S+ G F+ + Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463 >gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 495 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 239/462 (51%), Gaps = 21/462 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256 Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V G+ G+++ + V + + D + L G F V N L+A Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 495 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 172/470 (36%), Positives = 243/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+V + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIVEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 495 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 165/462 (35%), Positives = 239/462 (51%), Gaps = 21/462 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256 Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V G+ G+++ + V + + D + L G F V N L+A Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLAL 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL N1-067] Length = 491 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 153/484 (31%), Positives = 240/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + ++++++ DSR + G +F+ I G DGH F +A GA A+ Sbjct: 5 ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAVAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + I P++ V +T++ +++ A+ YG + ++ +TGT+GK++V Sbjct: 65 IAEKP---------IEVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + SG + IG I + + TTP + L + + +GV+ +E Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y AK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD +E ++ V++ G K A + I+ G FD Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KENADFRATNIEITSHGSTFDLT 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I + +E + V GRFE V + Sbjct: 285 TPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDY+HT + L +L+ I + R+ VV GCGGDRD+GKRP M KIA+ A + Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPV 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AI+ AI DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHEN 463 Query: 472 VHIV 475 I+ Sbjct: 464 YQII 467 >gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB056] gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB058] gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AB059] gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter baumannii AYE] gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii AB0057] Length = 499 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ + S DSR ++ G IF+A+ E F A+A GA A++ + + + Sbjct: 16 QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304 A++ ++K A N + + Y L + A + ++ S+ G F+ + Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463 >gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 161/501 (32%), Positives = 255/501 (50%), Gaps = 18/501 (3%) Query: 7 IYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 I + P L+ + I Q I + DSR IQ G FVA+ G+ DG FI A+A Sbjct: 3 ITQGLPTLLAPWMKIDDPQLNSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALA 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA ++ + + + + PI+ + + + LS A R Y H ++AVTGT+G Sbjct: 63 RGANLVLAQADEQRPHGTVSDIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAVTGTNG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++++ + Q + G + +G T + Q TT + + + L L+ QG + Sbjct: 123 KTTISQLITQWLELMGERAAVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARY 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++E SSHGL Q R+ + IAG F+NL RDH+DYH T Q Y AK LF E ++ A Sbjct: 183 TAMEVSSHGLVQGRIKALPFIAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQ--A 240 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIH--LKKVCAIHNKQQVTISVEGKD-- 299 I+ DD + A + R++ V YQ L +++Q + ++ +G Sbjct: 241 ILNVDDPVGAQ---WATHQWPRLVGVSLYQQPETERCLWATSVSYSEQGIHLAFDGSWGV 297 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L GEF N L++ +++G +L+ +L V GR E + ++ Sbjct: 298 GHLHVALIGEFNASNLLLSLATLLSLGFSKPALLDTAAQLTPVLGRMELFSVPGK-AKVV 356 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L +R G++ V+FGCGGDRD GKRP+M IA AD I TDDN Sbjct: 357 VDYAHTPDALEKALCALRVHCLGQLWVIFGCGGDRDTGKRPMMAAIAEQFADKIIFTDDN 416 Query: 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PRSE I +++ G+ +E NR +A++ A+ N D++++AGKGHE ++ Sbjct: 417 PRSESAHAIVQDMLAGLSHRQAHVEH-NRYQALQYALAHANADDIILLAGKGHEDYQVLA 475 Query: 477 NGEKKMSVDCDIIREILGLIL 497 + S D + +++LGL + Sbjct: 476 DQTVHYS-DRESAQQLLGLTV 495 >gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM 17244] Length = 481 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 252/491 (51%), Gaps = 32/491 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+D++ + +P +N IN + DSR + G +FV IVG + DGH +I Sbjct: 1 MKLKDIL-EGYPHSLNG----NKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYI 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ G + I S L+ + + + + +NTR L+ FA+R Y +N+ + Sbjct: 56 DSALKLGVKVICHSE--ELEGY----KDDITYIKCENTRNALAYFANRFYSFPSKNLKLI 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 V+GT+GK+S + + G + IG ++ + + TTP L K S + Sbjct: 110 GVSGTNGKTSFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V + +E SSHGL R+ + G F+NL DH+D+H+T + Y+ AK +L+ + Sbjct: 170 VKNDVDYCFLEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLYYMV 229 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTIS 294 + ++I DD Y + V+S G + + I +K++ +K T++ Sbjct: 230 ---DRFSVINIDDDYGHRLYNELKEDKKDVISFGEKEQSDYKITIKELSL--SKSSFTLT 284 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +DF+ G+F +YN A + + GI + E + + H GR E V + Sbjct: 285 KGNNKYDFVINSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERVAED-- 342 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I++DYAHT +++E ILK IR ++S +I +VFGCGG+RD GKRPIMG ++ AD I Sbjct: 343 ---IFIDYAHTPDAMEKILKLIREVSSKKITLVFGCGGNRDHGKRPIMGSVSEKYADNII 399 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +T DNPR E E I +I++GI + +R EAI A+ ++++V GKGHET Sbjct: 400 LTMDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKGHET 459 Query: 472 VHIVTNGEKKM 482 + G+KK+ Sbjct: 460 YQEL--GDKKI 468 >gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pectobacterium atrosepticum SCRI1043] Length = 495 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 170/480 (35%), Positives = 247/480 (51%), Gaps = 20/480 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E+ DSR AG +FVAIVG+K DG +IPQAIAQG AIV + D + Sbjct: 22 LREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEADGEAADGTVREMHG 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + + LS A R Y + E ++ VTGT+GK++ + Q Q G S + Sbjct: 82 VPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTTTQLLAQWSQALGEMSAVM 141 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + A TT S + + + LS L QG T ++E SSHGL Q+R+ + A Sbjct: 142 GTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQNRVAALPFTA 201 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH ++Y AK LF E + II ADD + + +A Sbjct: 202 AVFTNLSRDHLDYHGDMESYEAAKWLLFAE--HRVGQMIINADDEVGLRWLAKLPDAVAV 259 Query: 267 V----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 L G +G+++ ++ N + + L G F V N L+A Sbjct: 260 TMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGQGEIESRLMGAFNVSNMLLALATL 319 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +++G ++ +L V GR E + + VDYAHT ++LE L+ R G Sbjct: 320 LSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKP-TVVVDYAHTPDALEKALEAARLHCQG 378 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ ++ Sbjct: 379 KLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGL---LDA 435 Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 G R EA+ +AI + DV++VAGKGHE +V N S + R +LG+I Sbjct: 436 GRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVAR-LLGVI 494 >gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Pantoea vagans C9-1] Length = 495 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 235/467 (50%), Gaps = 27/467 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++ DSR +G +FVA+ G++ DG FIPQAIAQG A+V + D Sbjct: 20 RPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGVAAVVAEAEGEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + P + G +G + + Q + Q + L + Sbjct: 80 HGVPVIYLAQLHQRLSALAGRFY-QQPGEKQTLIGVTGTNGKTTTTQLLAQWATL----L 134 Query: 148 GPTSTISS----------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G TS + A +N TT S + + L L+ +G T ++E SSHGL QH Sbjct: 135 GETSAVMGTVGNGLVGHLVAAEN--TTGSAVDVQHMLHELAEKGATLTAMEVSSHGLVQH 192 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ + A FTNL RDH+DYH +Y +AK LF E + AI+ ADD + + Sbjct: 193 RVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSE--HQVGQAILNADDEVGRRWL 250 Query: 258 KRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 R +A L G G+++ V N + S + + PL G F V Sbjct: 251 ARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEIDSPLMGAFNVS 310 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A +++ A ++ +L V GR E + + VDYAHT ++LE L Sbjct: 311 NLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGKP-TVVVDYAHTPDALEKAL 369 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R G++ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP+ I +I+ Sbjct: 370 EAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPQAIVKDIL 429 Query: 434 HGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ PG R +A+ AI D+++VAGKGHE I+ N Sbjct: 430 TGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKGHEDYQIIGN 476 >gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris aestuarii DSM 271] Length = 499 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 163/512 (31%), Positives = 255/512 (49%), Gaps = 38/512 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DLI L++ L + ++++ +++DSR G + A+ G DGH FI Sbjct: 2 MTLEDLI-----GLLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 A+++G +V ++ ++ + V + R L+ A+ +G HP + + Sbjct: 57 SDALSKGVGVVVC------EEIPVSVDERCCYIRVADCRTALAAAAAEWFG-HPASSLRV 109 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK++ A ++ + RSG+ + IG T + D + TTP + L Sbjct: 110 IGVTGTNGKTTTARLIRTMLDRSGVKTGYIG---TGQALIGDESIVLERTTPEAMDLHAL 166 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + + G V +E SSH L HR +GI FTNL +H+D+H T Y +AK L Sbjct: 167 FRKMVNCGCEAVVMEVSSHALVLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQIL 226 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQ------GKFIHLKKVCAI 285 F ++ P + I+ ADDA+ M +G R+ +VG Q G + + + A Sbjct: 227 FRQVAP-DGFGIVNADDAWGS--MMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEAR 283 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + VT+ + G+ F LPG F V N L +A+G+ + + V GR Sbjct: 284 MDGSSVTVQMNGRACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGR 343 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403 E V + VDYAHT ++LE ++ + + +IVVFGCGGDRD+ KRP+MG Sbjct: 344 MEPVSDDGGLFSAIVDYAHTPDALEKVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMG 403 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDV 461 IA AD I+T DNPRSEDPE+I I GI F+ +R +AI ++ML D+ Sbjct: 404 GIAAAGADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDL 463 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L++AGKGHE + G K D +++ L Sbjct: 464 LLIAGKGHECYQ-ESGGRKSYFSDREVVARAL 494 >gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2] Length = 485 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 154/464 (33%), Positives = 233/464 (50%), Gaps = 19/464 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQL FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+A+ + Sbjct: 3 LNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK----GAAA 56 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY + S+ P++ V LS A R YG+ +++ VTGT+GK+SV+ Sbjct: 57 VAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 116 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T + R TTP P+ + L+ L G V++E SS Sbjct: 117 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 176 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I DD Sbjct: 177 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVINLDDD 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + + ++ S+ F++ ++ + + + PL G F Sbjct: 235 FGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFN 294 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G + +G +L L +L GR + +G + + VDYAHT ++LE Sbjct: 295 LSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPDALEK 353 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E I A+ Sbjct: 354 VLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIAD 413 Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I G F+ +R EAI I DV+++AGKGHE Sbjct: 414 IRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 455 >gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii DSM 2075] Length = 511 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 41/475 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V DSR G +FVA+VG+ DGH A ++ + + + Sbjct: 23 ELTGVCCDSRQAGPGMVFVAVVGHSADGHA---------YVAAAAAAGATAAVVQRPVEA 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI-CQRSGLSSF 145 + +VV ++R LS A G+ + ++ VTGT+GK+++ + I QR + Sbjct: 74 DIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQR--WPTG 131 Query: 146 QIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T FAQ R +TTP + L K L+ + + GV ++E SSH LDQHR D Sbjct: 132 MIGTVETC--FAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADHC 189 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------KESPAIIYADDAYSKEV 256 + G FTNL RDH+DYH YF AK LF ELLP K ++I DD + + + Sbjct: 190 RFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRVL 249 Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A G +L+ G G + + + + V I G +F L G + + N Sbjct: 250 ADQARGTGLALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQNI 309 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + AA + +A+G+ + LE + VPGR + V R ++VDYAH+ ++ L Sbjct: 310 VGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAALAV 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R + +GR+I VFG GGDRD+GKRP+MG+ A AD ++T DNPR+EDP I + G Sbjct: 370 LRPLCAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVEAG 429 Query: 436 I----------PGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + P ++ +E AI AI+ DV+++AGKGHE I+ Sbjct: 430 LVESEARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHEDYQII 484 >gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC 29799] Length = 486 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 229/467 (49%), Gaps = 55/467 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ +S D+R I+ G +FVA+ G K DGH F+ +A+ +GA A++ A Sbjct: 22 EISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICHKAPE---------E 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+ +TR L+ ++ +G+ + + + T + G+ ++G Sbjct: 73 PGPWLIAADTRAALAAVSANWFGRPADELTVIGVTGTNGKTTTTYLLKAMLEGVLGAKVG 132 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T + + + TTP + K L ++ G THV +E SSH L HR+DGI Sbjct: 133 LMGTNQNMIGEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEVSSHALALHRVDGIAF 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FTNL RDH+D+H T + Y K LF + A++ DD + Sbjct: 193 QVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQ----TGTAVLNLDDEAGR---------- 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFL---------FPLPG 308 Y + + NK Q ++ + +F+ L P+PG Sbjct: 239 -------YYASIVTCPALTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPG 291 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F +YNAL +A+ + V L + V GR E V T + + +DYAHT ++ Sbjct: 292 GFTIYNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTDYA-VIIDYAHTPDA 350 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE IL +R T GR+I +FGCGGDRD+ KRP+MG IA +LAD+ ++T DNPR+EDPE I Sbjct: 351 LENILTTVRDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLTSDNPRTEDPEAI 410 Query: 429 RAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 A+I G+ G + +R EAIR A++ D +V+AGKGHET Sbjct: 411 LADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKGHET 457 >gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID332] gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID332] Length = 492 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 GL A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IGLLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio brasiliensis LMG 20546] Length = 494 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 239/449 (53%), Gaps = 13/449 (2%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-TPILV 94 DSR + G FVAI G+ DG FI AI GA AI+ + A L RS+ I+ Sbjct: 33 DSRKVTQGTTFVAIKGHAVDGRRFINSAIELGANAII-AEACELHPHGKVERSSGVSIVY 91 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153 +D + LS AS LY ++ VTGT+GK+++ + Q G + +G T Sbjct: 92 LDQLAQHLSALASLLYPLSDNKLIGVTGTNGKTTITQIMAQWLDLIGHKAAVMGTTGNGF 151 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + Q TT + I + + L L QG + ++E SSHGL Q R+ + G F+NL Sbjct: 152 LADLQPAANTTGNAIEIQQTLHQLQQQGAQYTALEVSSHGLVQGRVKTLPFEVGVFSNLS 211 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 RDH+DYH T + Y AK LF++ K A+I DD +KR +A L+ Sbjct: 212 RDHLDYHGTMEEYAEAKFSLFDQHTCK--TAVINIDDQVGASWVKRLDSAIAVSLNPTDH 269 Query: 274 GKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + V +++ +++ ++G +F L GEF N L+A +A+G+D Sbjct: 270 PRAVWAESVS--YSEAGISLVIDGLFGRGEFTIALIGEFNASNVLLALTALLALGVDKQQ 327 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L+ L V GR E T S ++ VDYAHT ++LE LK +R G++ +FGCG Sbjct: 328 LLDTASSLKPVLGRMELF-TASDKAKVVVDYAHTPDALEKALKALRVHCHGKLWGIFGCG 386 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-IEKGNRIEA 448 GDRD GKRP+M I +LAD I+TDDNPRSE P I +++ G+ P I + NR +A Sbjct: 387 GDRDTGKRPMMAAIGEELADKVILTDDNPRSESPAAIVEDMLKGMNEPELAIVEHNRFDA 446 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++ A+ +QD++++AGKGHE ++ + Sbjct: 447 LKYALAHSGEQDIILLAGKGHEDYQVMAD 475 >gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Parasutterella excrementihominis YIT 11859] Length = 488 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 237/470 (50%), Gaps = 25/470 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G +F A+ G DG FI +A GA +V D + P++ + Sbjct: 24 DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG----DIGP---CSVPVIEI 76 Query: 96 DNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152 DN + L A+ YG ++ AVTGT+GK++ A+++ + R G IG T Sbjct: 77 DNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCT 136 Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ + +TTP P+ L + L S+G ++EASS GL+Q RLDG ++ FTN Sbjct: 137 LNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTN 196 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV- 270 L RDH+DYH T + Y AK LF P + A+I ++++MK A AG +L+V Sbjct: 197 LTRDHLDYHGTMENYLRAKEILFR--WPTVASAVINQSGEPAQQIMKTAEGAGKAILTVS 254 Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G Q ++ + + + + +G F G F V N L G I++G + Sbjct: 255 AKGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFE 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRII 385 VL+ KL GR + V + G VDY+HT +++ +K + + GRI Sbjct: 315 IETVLKEAAKLMPPAGRMQIV-RDDHGPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIW 373 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443 +V G GGDRD GKRP+MG+ A AD ++T DNPRSED ++I +I G P + + Sbjct: 374 IVVGAGGDRDHGKRPLMGQAAC-AADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE- 431 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R +AI A E DV++VAGKGHE V G K D + RE L Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKGHEDYQEV-KGVKHHFSDVEETREAL 480 >gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium retbaense DSM 5692] Length = 488 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 159/451 (35%), Positives = 240/451 (53%), Gaps = 28/451 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FVA+ G+ G F PQA+ +GA A+V + AT+ S +V Sbjct: 27 DSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAVVAAPGT----LPATL-SQQNCVVH 81 Query: 96 DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 D+ R+ L A +G + ++ VTGT+GK++V ++ QR G ++G TI Sbjct: 82 DDPREALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGR---RVGVIGTI 138 Query: 154 SS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ + LTTP L LS +++ GV V +E SSH L Q R G++ A Sbjct: 139 ANRWPGHEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVL 198 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 TN+ +DH+DYH+ ++YF AK LF L + +I ADD Y + + A G + Sbjct: 199 TNVSQDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSL 258 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S Q + V + K +++ +G+ + PL G N + A +A+G Sbjct: 259 HSEKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALG 318 Query: 327 I---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 D+A+ L VPGR E V N+ G I+VDYAHT ++LE +L+ + + R Sbjct: 319 FGPADAAV----LSDAPPVPGRLERV-ENAAGLDIFVDYAHTPDALENVLQAMTALDGNR 373 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440 ++VVFGCGGDRD+ KR MG+ AD+AI+T DNPR EDPE I A++ G+ P + Sbjct: 374 LLVVFGCGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRVV 433 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 E+ +R AI A++ + D+LVV GKGHET Sbjct: 434 EESDRKAAIALALQEMVPGDILVVTGKGHET 464 >gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani ATCC 19707] gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosococcus oceani ATCC 19707] gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus oceani AFC27] Length = 519 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/486 (32%), Positives = 249/486 (51%), Gaps = 28/486 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +ER+I+ +S DSR + G +F A G + GH I A+ QGA AIV + S Sbjct: 36 QERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIVYDPVIPV---SPA 92 Query: 86 IRS-----NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 I++ N P++ + + + + A R Y + + L VTGT+GK+SV+ F+ Q Sbjct: 93 IQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTSVSHFLAQALH 152 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 R G+ +G + Q + LTTP + + + L+ +++ + + +E SSH L+Q Sbjct: 153 RQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVLEVSSHALEQG 212 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R++G+ FTNL R+H+DYH Y AK RLF + P+ A+I DD + + Sbjct: 213 RVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQ--PELRHAVINIDDVAGRAFL 270 Query: 258 KRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N V ++ Y Q + C + S G+ L G F Sbjct: 271 A---NLPSEVAAISYGITNPQANLWASELHCDRYGIAMTVQSAWGEG-QLTCSLLGRFNA 326 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L A G + +G+ L+ L ++ V GR E G + VDYAHT ++LE + Sbjct: 327 YNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPLLVVDYAHTPDALEQV 386 Query: 373 LKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L +++ GR+ VFGCGGDRD+GKRP+MG A LAD I+TDDNPR EDP +I Sbjct: 387 LCSLQMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVILTDDNPRDEDPIQIII 446 Query: 431 EIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I+ GI P + + +R EAI A ++ +D++++AGKGHE + ++ S D + Sbjct: 447 DILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHEEYQQIGAEQRPFS-DRE 505 Query: 488 IIREIL 493 ++E L Sbjct: 506 QVQEAL 511 >gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas stutzeri DSM 4166] Length = 487 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 226/459 (49%), Gaps = 17/459 (3%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + I E++ DSR ++ G +F+A+ G + DG + + AY Sbjct: 8 LLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGR----DHVQDAIARGAAAVAYES 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 + + ++ V + LS A R YG+ N+ + VTGT+GK+SV+ + Q Sbjct: 64 EGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQAL 123 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 R G IG T + R TTP I + L+ L +G V++E SSHGLDQ Sbjct: 124 DRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ ++ FTNL RDH+DYH T +AY AK RLF +P S +I DD + + + Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFG--VPGLSCRVINLDDGFGRAL 241 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + S+ +++ + + + + PL G F V N L Sbjct: 242 AGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G + + +L L +L GR + +G R + VDYAHT ++LE +L + Sbjct: 302 AAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRP-LVVVDYAHTPDALEKVLTAL 360 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R GR++ +FGCGGDRD GKRP+M ++A LAD +VTDDNPR+E PE+I ++ G Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSGF 420 Query: 437 PG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 F++ R +AI I N DV+V+AGKGHE Sbjct: 421 VNPEAVTFVQ--GRAQAIARLIAAANASDVVVLAGKGHE 457 >gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Amoebophilus asiaticus 5a2] gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus 5a2] Length = 487 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 160/501 (31%), Positives = 263/501 (52%), Gaps = 37/501 (7%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+N++S+ + I + DSR + +F+A+ G++ DGH +I AIA G++AI Sbjct: 6 ELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSKAI 65 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSS 128 + + + + ++ + V N + L AS Y K+P ++AVTGTSGK+S Sbjct: 66 IC------EKYPEHLATHVTYIQVSNVTQALGTIASNFY-KNPSTKLKLVAVTGTSGKTS 118 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTH 184 + ++ ++ G + +G STI + D + LTTP+ I + KAL+ + + G Sbjct: 119 TVHLLYRLFRQLG---YSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQF 175 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +EASSH + Q+RL G++L F N+ DH+DYH T AY AK +LF+EL + Sbjct: 176 CFMEASSHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDEL--TANAF 233 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 ++Y D ++M + A +++ F +V A + Q + + + G+ + F Sbjct: 234 VLYNIDDKRGKIMIQNTRATTYSMAIQRPADFT--AQVLA-NTWQGLELRIGGQ--NVWF 288 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F N L A +G S +L L + + GRF+ + T + I +DYAH Sbjct: 289 QLLGTFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKKPDVI-IDYAH 347 Query: 365 TSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +LE IL +I+ I G+II + GCGG+RD KRP+M +IA L+D I+T DN Sbjct: 348 KPEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLSDQLILTSDN 407 Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 PR EDP+ I E+ G+ I +R EAI+ A +M D++++AGKGHE Sbjct: 408 PRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKGHENYQE 467 Query: 475 VTNGEKKMSVDCDIIREILGL 495 + + +S D +I+ +++ + Sbjct: 468 IAGIKYPLS-DEEIVSKLMAV 487 >gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter bemidjiensis Bem] Length = 505 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 244/488 (50%), Gaps = 48/488 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + G +F A+ G K DG F+ A+ GA AIV + + Sbjct: 22 EIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVADRPCACPGVT----- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 ++VV + R +SL A+ YG I V T + V+ I +++G+ + Sbjct: 77 ---VVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTTTYLVEGIMEQAGVPAAV 133 Query: 147 IGPTSTIS-SFAQDN---RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TIS F + N TTP + L L L G +E SSH L+QHR+DG Sbjct: 134 LG---TISYRFGETNIPAPNTTPESVDLQAILRELVDHGARGAVMEVSSHALEQHRVDGC 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVM 257 F+NL RDH+DYH ++YF +K+RLF +LL E P A++ DD + + Sbjct: 191 LFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFGPRI- 249 Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A A VL+ GK I + + + + ++ + L G F +YN L Sbjct: 250 --AEKAAAPVLTYSMTGKADISVAEAEFSVDGIRCRLNTPVGEISLASELLGRFNLYNIL 307 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A G +A+G + +E VPGR E V T G + VDYAHT ++LE +L + Sbjct: 308 SAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVETE-EGITVLVDYAHTGDALENVLSTV 366 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + RII +FGCGGDRD+GKRP+MG+IA +D+A++T DNPR+EDP+ I ++ GI Sbjct: 367 SELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEDPQAILEDVRAGI 426 Query: 437 --------------PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 GF EKG +R AIR A+ + D++++AGKGHE IV Sbjct: 427 LPLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAAHPGDIVLLAGKGHEDYQIV-- 484 Query: 478 GEKKMSVD 485 G +K D Sbjct: 485 GTEKFHFD 492 >gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter koseri ATCC BAA-895] gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 241/469 (51%), Gaps = 33/469 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 19 ERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P + + G +G + + Q + Q S L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HEPSEHMRLVGVTGTNGKTTTTQLLAQWSQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L+ L QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + +K A FTNL RDH+DYH + Y AK L+ E AI+ ADD + + Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYSTHHYGE--AIVNADDEVGRRWLV 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312 R +A + + G++ LK V ++ TI + + + L G F V Sbjct: 252 RLPDAVAVSMEDHINPNCHGRW--LKAVEVKYHDSGATIRFDSSWGEGEIESRLMGAFNV 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE Sbjct: 310 SNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKA 368 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R +G++ VFGCGGDRD+GKRP+MG IA + AD+ +VTDDNPR+E+P I +I Sbjct: 369 LQAARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFADVVVVTDDNPRTEEPRAIINDI 428 Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G ++ G+ R EA+ AI + DV++VAGKGHE IV Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKGHEDYQIV 474 >gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Polaribacter sp. MED152] Length = 481 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 247/461 (53%), Gaps = 40/461 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N++ DSR + G +F+A G DGHL++ +AI GA+AI+ + FS + Sbjct: 16 EVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIIC------EGFSFDRKE 69 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V + + L++ AS Y ++P ++ VTGT+GK+++AS + Q+ ++G + Sbjct: 70 GITYIRVADANEALAIMASNFY-ENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAG---Y 125 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G ST+ + TTP + + + L + GV + +E SSHG+ Q R +G Sbjct: 126 KVGLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTEG 185 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--- 258 ++ G FTNL DH+DYH+ Y N K + F++ LPK + A+ DD +++ Sbjct: 186 LQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDD-LPKSAFALTNIDDKNGNYMLQNTK 244 Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + ++ + L+ ++ K + KQ + + + L G F +YN Sbjct: 245 AKKYSYALKTLA-DFKAKILE---------KQLSGTLISIDNTEVWTKLIGVFNIYNLTA 294 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +G++ +L + +L V GRFE+V + G VDYAHT ++L+ +L+ I Sbjct: 295 IIATAELLGLEKLDILTIVSQLESVNGRFEYV-VSEDGVTAIVDYAHTPDALKNVLETIN 353 Query: 378 TITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + ++I V GCGGDRD+ KRP M IA L++ AI T DNPR+EDP+ I E+ G Sbjct: 354 DIRTNNEKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEAG 413 Query: 436 I-PGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I P K NR +AI+TA ++ + D++++AGKGHE+ Sbjct: 414 ISPEHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHES 454 >gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas aeruginosa PA7] Length = 487 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 233/468 (49%), Gaps = 19/468 (4%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL FP R+ I E++ DSR ++ G +F+A+ G ++DG I A+A+ Sbjct: 1 MPMSLNQL--FPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAK---- 54 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 55 GAAAVAYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P ++ Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPGLRCRVVN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + + S+ F++ ++ + + + PL Sbjct: 233 LDDDFGRRLAGEEQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N L A G + +G +L L +L GR + +G + + VDYAHT + Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKP-LVVVDYAHTPD 351 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +L+ +R + R++ +FGCGGDRD GKRP+M IA LAD +VTDDNPR+E Sbjct: 352 ALEKVLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAA 411 Query: 428 IRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A+I G F+ +R EAI I DV+++AGKGHE Sbjct: 412 IIADIRKGFAAADKVTFLP--SRGEAIAHLIASAAVDDVVLLAGKGHE 457 >gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aggregatibacter aphrophilus NJ8700] Length = 488 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 238/468 (50%), Gaps = 15/468 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +AG +F+AI G++ DG +IPQA+ GA A++ + + Q N P++ Sbjct: 24 DSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADSAQQHLQIHYEQNVPLIAF 83 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A Y + P L + G +G + + Q + Q + L TI + Sbjct: 84 YQLSENLSRLADVFY-QSPSKRLTLVGVTGTNGKTTTTQLLAQWTQLLGHTSAVMGTIGN 142 Query: 156 --FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 F Q + TT S + + +L+ +QG ++E SSHGL QHR++G+ A FTN Sbjct: 143 GLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGLVQHRVEGVHFSAAVFTN 202 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH + + Y AK RLF EL + II ADD ++ NA + Sbjct: 203 LSRDHLDYHHSMENYAAAKKRLFTELDSRNQ--IIDADDPIGAAWLRELPNAVAVSTNPD 260 Query: 272 YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + K +H + + + D + L G F V N L+ + +G Sbjct: 261 FSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVSNLLLVTATLLTLGYS 320 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + ++ + KL V GR E + T + + VDYAHT ++LE L+ R G++ +F Sbjct: 321 LSELVNSVNKLTGVCGRMEML-TATHKPTVIVDYAHTPDALEKALQAARLHCHGKLWCIF 379 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNR 445 GCGGDRD+GKRP+M IA L+D I TDDNPR+ED +I A+I+ G P ++ R Sbjct: 380 GCGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTEDHTQIMADILKGFINPQAVQVIHQR 439 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 EAI TAI+ + DV+++AGKGHE I+ + S D ++ R L Sbjct: 440 EEAIATAIKSAVENDVILIAGKGHEDYQIIGKTKHHFS-DQEVARHYL 486 >gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ilyobacter polytropus DSM 2926] Length = 478 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 236/465 (50%), Gaps = 42/465 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G IFVA+ G DGH FI A+ GA A++ S + + +VV Sbjct: 27 DSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAVIGSK-------EIEVNHDITYIVV 79 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI-----CQRSGLSSFQI 147 N R+ L + AS Y K P+ L + G +G + + ++QI R G +++ Sbjct: 80 KNLRQKLGVIASNFY-KWPQKKLEIVGITGTNGKTTTTYLLEQILGEDKVSRIGTVEYKV 138 Query: 148 G----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G P TTP + L K +G+ ++ +E SSH L+ R++ I Sbjct: 139 GNEIIPAPN----------TTPESLDLIKICRKSVDRGIKYLIMEVSSHALEMGRVEMID 188 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNL +H+DYH+ + YF+AK +LF + KE+ + DD Y K + Sbjct: 189 FDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKEN-TVFNTDDFYGKRLFDEFGG- 246 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +S G + ++ + Q++ +S + L G+F VYN L A G+ I Sbjct: 247 ----ISYGIESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQGKFNVYNLLTAVGVAI 302 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+ + + LEKL PGRFE + + + VDYAHT+++LE IL + I + Sbjct: 303 RLGLSLEEITDRLEKLESAPGRFECIEA-GQNFMVVVDYAHTADALENILSALNEIKIEK 361 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-- 441 II VFGCGGDRD KR M + A L+DI IVT DNPR+EDP KI E+ G+ + Sbjct: 362 IITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTEDPVKILDEVSKGLSSLKDSL 421 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R +AI A+ M K D++++AGKGHE I+ G+ K+ D Sbjct: 422 LEIDREKAIEKAVGMAKKNDIVLIAGKGHEDYQII--GKDKIHFD 464 >gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 495 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 162/462 (35%), Positives = 238/462 (51%), Gaps = 21/462 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEARDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD + + +A Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA- 256 Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V G+ G+++ + V + + + + L G F V N L+A Sbjct: 257 VAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLAL 316 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G +L+ +L V GR E + + VDYAHT ++LE L+ R Sbjct: 317 ATLLALGYPLTDLLKTAARLQPVCGRMEVFSAAGKA-TVVVDYAHTPDALEKALQAARLH 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G Sbjct: 376 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 432 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 433 LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. NATL2A] Length = 509 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 240/468 (51%), Gaps = 23/468 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S+DSR I+ G +F+ + G K DG F +AI +GA A ++S SL + Sbjct: 24 EIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGACAAIISKKASL--LNPPTNE 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +++ + F+ A+ +GK I + +TGT+GK++ + ++ + G S Sbjct: 82 DPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTTSFLIEFLTTSLGHPSAL 141 Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + + + ++ TT + L L GV + ++E SSH L Q+R+ G Sbjct: 142 FGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGAMEVSSHALSQNRVAGCDFN 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSKEVMKRAHNA 263 FTNL RDH+DYH + ++YF AK LF L+ P ++I DD + ++ K N Sbjct: 202 GAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRSVINIDDKWGAKLAKEL-NK 260 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALV 317 C S+ + K I N Q + +GK +F+ PL GEF + N L Sbjct: 261 KCWTCSLKENSQ-TREKADLYISNLQIMQDGYKGKLHTPFGVENFISPLIGEFNLMNMLQ 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRGGR--IYVDYAHTSNSLEMI 372 A G+ + G+ +L L K VPGR + + G + G + VDYAHT + L+ Sbjct: 320 AVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVKEGYPLVIVDYAHTPDGLQNA 379 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L R++T R+I VFGCGGDRD+GKR MG++A AD +VT DNPR EDP +I +I Sbjct: 380 LIASRSLTKRRLICVFGCGGDRDKGKRSKMGEVAAKFADYIVVTSDNPRQEDPIEIIKDI 439 Query: 433 IHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 GI E + R AI+ AI K DV+++AGKGHE I+ + Sbjct: 440 GKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLIAGKGHEDYQILKD 487 >gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Edwardsiella ictaluri 93-146] Length = 469 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 167/476 (35%), Positives = 237/476 (49%), Gaps = 24/476 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG+ DG FIPQAIAQG A++ + +D S P++ + Sbjct: 2 DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + LS A R YG+ P L + G +G + + Q + Q + L +G T + Sbjct: 62 NRLNERLSALAGRFYGQ-PGADLRLVGVTGTNGKTTTTQLLAQWAQL----LGETGAVMG 116 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L L+ G T V++E SSHGL Q+R+ + A Sbjct: 117 TVGNGLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAAS 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-- 265 +FTNL RDH+DYH + Y AK RLF E I+ ADD + + +A Sbjct: 177 AFTNLSRDHLDYHGDMEHYAQAKWRLFSTHHSGEK--IVNADDEMGLLWLDKLPDAVAVT 234 Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 VL G+ G+++ V + + L GEF V N LVA + Sbjct: 235 VTGVLPEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLL 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G A + +L V GR E ++ + VDYAHT ++LE L R G+ Sbjct: 295 ALGYPLAALCAASVQLQPVCGRMEVFQAPAKP-TVVVDYAHTPDALEKALLAARLHCQGQ 353 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-I 440 + +FGCGGDRD GKRP+MG IA AD +VTDDNPRSE+P I EI+ G+ PG + Sbjct: 354 LWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAM 413 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ QDV++VAGKGHE +V N S + R +LG++ Sbjct: 414 AIPGRAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDYSDRVTVAR-LLGVV 468 >gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral taxon 171 str. F0337] Length = 528 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 158/466 (33%), Positives = 235/466 (50%), Gaps = 44/466 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--- 89 VS DS G +FV + G G F +A+A GA A++ S D + + + Sbjct: 50 VSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDS-----DGAQIVHESAPG 104 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQI-------CQR 139 TP+LV + R + ++ Y HP L AVTGT+GK++ A F+ I C Sbjct: 105 TPVLVHGDPRAIVGPLSAEAY-HHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCMV 163 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G ++G S S R T +P+ L + ++ V S+EASSH + HRL Sbjct: 164 AGTVELRVGEHSVESP-----RTTVEAPV-LQRMMALAVEDRVGAASLEASSHAIVLHRL 217 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DGI + FTNL RDH+D+H+T + Y AK RLF + ++ DD + + Sbjct: 218 DGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARR--GVVCVDDQWGAALAAD 275 Query: 260 AHNAGCRVLSVGYQGK-----FIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVY 313 A RV + Y G ++ V + T+ +G+ + PLPG V Sbjct: 276 APIEIDRVRA--YPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQ 333 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMI 372 NA +A + I G+ +A L H +PGR + + + R G VD+AHT ++E+ Sbjct: 334 NAALALVMAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELA 393 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK +R IT GR+IVVFG GDRDQGKRP++G++ LAD+ ++TD+NPRSEDP+ IR I Sbjct: 394 LKAVRPITPGRLIVVFGSDGDRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDAI 453 Query: 433 IHGIPGFIEKGNRIE--------AIRTAIEMLNKQDVLVVAGKGHE 470 + G+ G +E A+R +E+ D ++V GKGHE Sbjct: 454 LDGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHE 499 >gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 495 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 243/465 (52%), Gaps = 27/465 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKF---IH---LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316 ++V +G H LK ++ + VTI + + L G F V N L Sbjct: 254 PDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 314 LALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAA 372 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + Sbjct: 373 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---L 429 Query: 437 PGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 430 AGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Prevotella tannerae ATCC 51259] Length = 487 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 168/519 (32%), Positives = 264/519 (50%), Gaps = 59/519 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER---KINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL DL+ K I P++ R IN V+ DSR ++ G +FVA+ G + DGH Sbjct: 2 MKLSDLLQK----------ISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGH 51 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115 FI AI +GA AI+VS + A ++ + V +T + A+ YG + Sbjct: 52 AFIAGAIEKGASAILVS-----EPIPAETPTDVTFVRVADTEDAIGKVATTFYGDPTQRL 106 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLA 171 ++ VTGT+GK+++A+ + + G F+ G ST+ ++ A TTP P+ L Sbjct: 107 KLVGVTGTNGKTTIATVLYHLFTELG---FKCGLCSTVCNYIGTHAVPTEHTTPDPVTLN 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 K L ++ +G + +E SSH + Q R+ G+ FTNL RDH+DYH+T + Y +AK Sbjct: 164 KLLGEMADEGCEYAFMECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKK 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHN 287 F+ L K++ AI ADD + +M + A + S Y+GK + + Sbjct: 224 AFFDG-LSKQAFAITNADDK-NGPIMVQNTKARIKTYSTRAAADYKGKILE-------ES 274 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + + + + G++ F G F V N L G I +G+ L L LH V GRFE Sbjct: 275 LEGMLLEINGREVSVRF--VGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFE 332 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKI 405 + + +G +DYAHT ++L +L +I I G+ +I V G GG+RD+GKRP+M + Sbjct: 333 AI-RSPKGVSAIIDYAHTPDALANVLSSIDEIVHGKAQVITVCGAGGNRDKGKRPLMAQE 391 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456 A + +D I+T DNPR E+P+ I +++ G +++ R + I R A M Sbjct: 392 AANRSDRVIITSDNPRFEEPQAIVDDMLAG----LDETQRAKTIAIVDRREAIRAAAAMA 447 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 DV+++AGKGHE + G K D + +R+ GL Sbjct: 448 QAGDVILIAGKGHEPYQEI-KGVKHHFDDHEEVRKAFGL 485 >gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nostoc punctiforme PCC 73102] gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC 73102] Length = 500 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 160/492 (32%), Positives = 251/492 (51%), Gaps = 16/492 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ + + QL+ P + ++ + ++S G +F+ + G + DG F Sbjct: 1 MKLRELLTA--VDSVEQLASHPT-LEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFW 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AIA GA A +VS + ++ + ++ N + + AS YG + + V Sbjct: 58 QSAIASGAVAAIVSPEAAQKNPPT---NEAVVISASNITQACAQIASAFYGYPGQKLKLV 114 Query: 121 TGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 T + ++ + ++ L++ +G T + F Q TTP + L + L+ Sbjct: 115 GVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G +E SSH L Q R+ G + F+NL +DH+DYH+ + YF AK LF Sbjct: 175 VNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPD 234 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K AII ADD+Y K ++ + SV + + + N + Sbjct: 235 YLK-GRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPK 293 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356 D F PL G++ + N L A G + +G+D LV + + VPGR E V NS + Sbjct: 294 GDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDI 353 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRPIMG+IA +LAD+A+VT Sbjct: 354 SVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVT 413 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR+E+PE+I +++ GI ++ +R AIRTAI D +++AGKGHE Sbjct: 414 SDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQ 473 Query: 474 IVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 474 IL--GTEKIHFD 483 >gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 495 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESCLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 495 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum Pei191] Length = 479 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 246/465 (52%), Gaps = 39/465 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ E++ +S+ + G IF AI G K DG+ FI A+++GA A+V + A Sbjct: 12 EVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGAVAVVSTE-------PAKK 64 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + P VD+ ++ A + Y K+P + + +TGT GK+S++ ++ I +G+ Sbjct: 65 KYPVPYFQVDDIDLAMAKAAVKFY-KNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIP 123 Query: 144 SFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG + FA+ TTP+ +YL + + S G V +E SSH L+ R+ Sbjct: 124 CSVIGTINYRINGEVFAKAPN-TTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVF 182 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVM 257 G+ FTNL RDH+D+H+ + YF AK +LF+ L+ PA I+ DD Y Sbjct: 183 GLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQY----- 237 Query: 258 KRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVY 313 G R+ + + I + V A + K+ VT S +G+ L G+ +Y Sbjct: 238 ------GLRLADKIKAKTTLIPVSLVEAENVKESLNGVTFSYKGESASI--NLLGKHNLY 289 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A +A G+D L+ + KL +PGR + V + ++VD+A+T+ SL Sbjct: 290 NAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRV-NKGQPFYVFVDFAYTTESLMKAY 348 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + +G II VFGCGGDRD+ KRP+MG A + ++T+DNPR+ED ++I +I+ Sbjct: 349 ETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHVLLTNDNPRTEDQQQIFNDIL 408 Query: 434 HGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +G+ G+ +R AI+T I + + D+L++AGKGHE I+ Sbjct: 409 NGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKGHEDYQIL 453 >gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 499 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/480 (32%), Positives = 245/480 (51%), Gaps = 32/480 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + DSR + G IFVA+ G DG +IP+A+A G IV + Sbjct: 33 QVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRP-----ESASD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L V +T K +++ AS Y + PE I+ VTGT+GK++ A+ Q+ G+ + Sbjct: 88 EVVWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAA 146 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+ D TTP + L + + + G ++ +E SSH L Q R+ G Sbjct: 147 LF---STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYG 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH T QAY AK LF+ L P ++ A++ ADD + VM Sbjct: 204 LPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTP-DAYALVNADDR-NGSVM--VQ 259 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N + + + ++ ++ + T+ ++ ++ + L G + YN G+ Sbjct: 260 NCAAHLHTYAMRSHADYMAQLLGQYVDGS-TLLLDNEEVEI--KLVGSYNAYNVTAVYGV 316 Query: 322 C--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +D +L+L + L V GRF+ + + RG + VDYAHT ++LE +LK + + Sbjct: 317 ARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAHTPDALENLLKTVSEL 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 + ++ VV G GGDRD GKRP MG+IA ++ D +T DNPRSEDP+ I +++ GIP Sbjct: 376 NASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEGIPQA 435 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R +AI A + D++V+AGKGHET + G + D +++REI Sbjct: 436 ERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-EGVRHHFDDKEVVREIFA 494 >gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 495 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINSNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas mossii DSM 22836] Length = 483 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 168/509 (33%), Positives = 257/509 (50%), Gaps = 42/509 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKLQDL+ D E+ + I + V +DSR G +F+A+ G + DGHL+ Sbjct: 1 MKLQDLLKNIDVIEIKGEQDI--------NVTGVFTDSRKATPGSVFIALKGVQVDGHLY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I A+ GA+ I+ + T + V ++ A+ YG N+ Sbjct: 53 IKNALELGAKVILHENKID------TSNEGITYIKVKDSADAAGKIATHWYGDPSNNLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAK 172 + VTGT+GK++ A+ + ++ ++ G +++G ST++++ D ++ TTP PI L + Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKLG---YKVGLLSTVANYI-DGKVYHATHTTPDPISLNE 162 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + G + +E SSH + Q R+ G+K G FTNL +DH+DYH+T Y AK Sbjct: 163 MLKNMVDAGCEYAFMEVSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKA 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F++ LP + A+ DD + VM + A SV F K + Sbjct: 223 FFDQ-LPDTAFALTNIDDK-NGLVMLQNTKAKTSTYSVHSLADF---KARIIEKHFDGTA 277 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + GK+ F G F VYN L G + +G S L L L V GRFE + + Sbjct: 278 IEINGKELQVQF--VGVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETI-RS 334 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S+G VDYAHT ++L +L+ I + +GR+I V GCGG+RD+ KRPIM + A+ L+ Sbjct: 335 SQGFTAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLS 394 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR E+P+ I ++ G+ K R +AI+TA + DV+++A Sbjct: 395 DQVILTSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIA 454 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKGHE V G K D +I++ I G Sbjct: 455 GKGHEDYQDV-KGVKHHFDDKEIVKNIFG 482 >gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM 14365] Length = 1035 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 246/494 (49%), Gaps = 34/494 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL LI +D EL ++ + R I V DSR + G +FVA+ G + DGH ++ Sbjct: 1 MKLATLI-QDLAELA---AVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYL 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 P I GA A+VV A +A + T ++V + R L + A+R+ G+ E ++ Sbjct: 57 PAVIDAGAAAVVVERAIEDPALAARV---TQVIVPEGARA-LGVLAARMAGRPGERMRLV 112 Query: 119 AVTGTSGKSSVASFVQQI-------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 +TGT+GK++ + ++ I C G S++ G + + TTP+ + L Sbjct: 113 GITGTNGKTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPY------TTPTALILQ 166 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +AL + + TH +E SS L RL G + +FTN +DH+D H + AY AK Sbjct: 167 EALGEMVAASCTHAVLEVSSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKE 226 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHN 287 RLF + L + A+I DD + ++ A RV+ V G ++ + A Sbjct: 227 RLFRDHLAENGVAVIDVDDKAAPHMIAAAGER--RVVRVSARPGATAADAEVRVLAAETT 284 Query: 288 KQQVTISVEGKDFDFLFPLP---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +T F P G + V N VA +C A+ + A + +E + VPG Sbjct: 285 IAGITAEFATPRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPG 344 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V N G I VDYAHT ++L +L +R +T R++ VFGCGGDRD KRP MG Sbjct: 345 RVERV-ANDAGLDILVDYAHTPDALASVLAALRPLTQRRLLCVFGCGGDRDADKRPKMGA 403 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLV 463 A AD+ +VT DNPRSE P I +I+ G+P F +R I A+ D+++ Sbjct: 404 AAAAGADLVVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVL 463 Query: 464 VAGKGHETVHIVTN 477 +AGKGHET I+ + Sbjct: 464 IAGKGHETYQILGD 477 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G ++VAI G + DGH F QA GA A++V + +D + ++ V Sbjct: 527 DGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGACALMVERGRAPRDAAGNA-LKLAVIEV 585 Query: 96 DNTRKFLSLFA 106 D+TR L A Sbjct: 586 DDTRLALGSVA 596 >gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces urogenitalis DSM 15434] gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Actinomyces urogenitalis DSM 15434] Length = 549 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/495 (32%), Positives = 246/495 (49%), Gaps = 45/495 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS DS + G +FVA+ G + G F G V++ A A++ Sbjct: 46 IHGVSVDSGDVAPGELFVALPGFRRHGAEFA-AQAVAGGAVAVLTDADGATRLGASL-GQ 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI-------CQR 139 P+L + R + A+ +Y HP L T +G + + F+Q I C Sbjct: 104 VPVLTHPDPRAVVGPLAAEVY-HHPATHLTTTAVTGTNGKTTTTYFLQSILAAHLGQCMI 162 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G +G S S R T +P+ L + ++ +GV S+EASSH + HRL Sbjct: 163 AGTVELSVGTQSVESP-----RTTVEAPV-LQRMMALAVEEGVKAASLEASSHAIVLHRL 216 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G + FTNL RDH+D+H T + Y AK RLF + A+I DD + + +R Sbjct: 217 GGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFTPEHARR--AVICVDDRWGAALAER 274 Query: 260 AHNAGC----RVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFP 305 + G RV + Q G + +V A + T ++ G D + L P Sbjct: 275 VADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMTQAATTFTLHGPDGEQIEALCP 334 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAH 364 LPG V NA +A + + G+ ++ L H +PGR + + + R G VD+AH Sbjct: 335 LPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPGRMQRISQRDGRRGTCIVDFAH 394 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++++ LK +R IT GR+IVVFG GDRDQGKRP++G++A LAD+ +VTD+NPRSED Sbjct: 395 TPEAMDLALKAVREITPGRLIVVFGSDGDRDQGKRPLLGQVAARLADVLVVTDENPRSED 454 Query: 425 PEKIRAEIIHGI----PGF--IEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 P+ IR ++ G+ PG +E+ R +A+R +E+ QD ++V GKGHE + Sbjct: 455 PQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGVELCGPQDTVIVTGKGHEPF-LEM 513 Query: 477 NGEKKMSVDCDIIRE 491 GE D ++RE Sbjct: 514 AGEFIRYNDAPVMRE 528 >gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2] Length = 486 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 245/468 (52%), Gaps = 40/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +D+R + G +FV I G DGH F A +GA A++ L Sbjct: 22 EITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKKGAAAVIAQRELDL--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P++VV NT++ +++ A YG+ + +++ +TGT+GK++ + +++I +G + Sbjct: 73 DIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTTSHLIEKILADAGRKTGL 132 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T I+ + + TTP + L ++ GV +E SSH LD+ R+ G Sbjct: 133 IGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVMEVSSHALDEGRIHGCDFN 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260 FTNL +DH+DYH+T Y AK LF +L E P AI+ +DD S E K Sbjct: 193 IAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEPKYAILNSDDPASAEYEK-- 250 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 + V+S G + L+ + + ++ G +FD + P + G+F Sbjct: 251 -STAAHVISYGIDQE-ADLRAI-------NIQMTSGGTEFDLISPFGKHKVSLKMIGKFS 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +YN L + G IA GI + +++ E++ V GRFE V + + VDY+HT +SL+ Sbjct: 302 IYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG-QDFSVIVDYSHTPDSLKN 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ ++ RI + GCGGDRD+ KRP+M +IA + I T DNPRSEDP +I + Sbjct: 361 ALETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYSTDPIFTSDNPRSEDPIQILRD 420 Query: 432 IIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G+ G K +R EAI A++ +K DV+++AGKGHET V N Sbjct: 421 MEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKGHETYQQVGN 468 >gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 491 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 165/509 (32%), Positives = 253/509 (49%), Gaps = 34/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DLI + ++ R V+ D+ + G +F A+ G+ G + Sbjct: 1 MKLSDLIAGQ-----DHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAV 55 Query: 61 PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117 A+A+GA A++V A +L + +L V + RK ++ ASR +G+ ++ Sbjct: 56 APAVARGAVAVLVDEQAPTLP----AAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYL 170 +A+TGT+GK+SV+ + + + + ++G T S D + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQ 289 +RLF+ L + A++ ADD + K A V + G + A+ + Sbjct: 230 LRLFQGLCRR---AVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLAVDASGS 283 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + T+ +G+ + P PG F V NAL C +G A +++ LE++ +PGRFE + Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA Sbjct: 344 QIPG-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +D+ ++T DNPR EDPE I +I GI F +R AI A+ DV+++A Sbjct: 403 SDLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIA 462 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKG E H GE D +RE++G Sbjct: 463 GKGSEP-HQSVRGELLPFSDMATVRELIG 490 >gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 492 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 231/480 (48%), Gaps = 26/480 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AIA GA + F+ P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDD---GKFTWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEEATHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQVTIS 294 AII DD Y E++ R C L+V GY + I + A + + Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKK-DCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQ 288 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F N L A G VLE L K+ GR + + NS Sbjct: 289 TPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSG 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ AD Sbjct: 348 KPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADK 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +VT DNPR E+P+ I +I+ +P + +R AIR A+E D++++AGKGHE Sbjct: 408 VVVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHEN 467 >gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus Rock3-44] Length = 491 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 247/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR + G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + ++ + G + IG + I + + TTP + L + + + V +E Sbjct: 117 HIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH LD R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNNDDPVAEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNESINIT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ +++ ++KL VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVVD----GGQDYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A A AI+T DNP Sbjct: 350 DYAHTPDSLENVLITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYATHAILTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I +++ G G + +R EAI AI +D++++AGKGHET I+ Sbjct: 410 RSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKGHETYQII 466 >gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium cellulolyticum H10] Length = 486 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 247/477 (51%), Gaps = 40/477 (8%) Query: 13 ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ L+I + + +++ ++ DSR + G +FV I G DGH +I AI G +A Sbjct: 5 ELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIENGTKAF 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 +V + + TI +D+TR L+ + +G HP N++ +TGT GK++ Sbjct: 65 LVQKHVVVPEGITTIE-------IDDTRFGLAAVSDAFFG-HPSSKFNLIGITGTKGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ I + +G + +G + I S TTP L S + + V + Sbjct: 117 TTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVM 176 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAI 245 E SS GL+ HR+ G FTN RDHI H T + YFNAK +LF+ A+ Sbjct: 177 EVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC----RKAV 232 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I D + + K A A C+V + G K I + T++ D Sbjct: 233 INIDSEHGR---KMAELAKCKVFTYGLSDKADIWASDIVKKTGHTYFTLNSPWGSIDIET 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGR--I 358 L GEF +YNAL A G C I + LEH L K+ VPGR E V T GG + Sbjct: 290 DLQGEFNIYNALAAIGSCCLI---PGITLEHVRLGLTKV-TVPGRMESVKT---GGNYSV 342 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAHT +SLE +LK ++ GR++ +FGCGGDRD+GKRP MG+I+ ++AD I+T D Sbjct: 343 LIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITSD 402 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPR+E+PE+I +I GI +I+ +R +AI+ A+E D++++AGKGHET Sbjct: 403 NPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKGHET 459 >gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 495 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 495 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEAADGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESCLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes OXCC13] Length = 503 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 239/477 (50%), Gaps = 39/477 (8%) Query: 35 SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 SDSR I + +F A G+ DG +I +AI GA+A+V Y DF Sbjct: 25 SDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVV----YESSDFEWNPDWKVDH 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V + A YG + I+AVTGT+GK+S ++ Q R G + IG T Sbjct: 81 LGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSRLGRKTAVIG-T 139 Query: 151 STISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +S F +++ TTP + L + L+ L S+ V V++EASS G+DQ RL+G+ Sbjct: 140 LGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGIDQGRLNGLT 199 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTN RDH+DYH +Y AK RLF K A++ DDA E+ A Sbjct: 200 IDIALFTNFTRDHLDYHHDMASYKAAKRRLFGWKGLKH--AVVNLDDAMGIEL---ASEL 254 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 ++ GY + + N + G +F P L G F V N Sbjct: 255 KSKMALTGYS--INGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFNVSN 312 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L G+ +A GID ++ L L PGR + +G + +D+AHT ++LE L Sbjct: 313 VLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMG-GKEAPLVVIDFAHTPDALEKGLS 371 Query: 375 NIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +R + +G++ +FGCGGDRD GKRP MG+ A + AD+ IVT DNPRSEDP+KI E Sbjct: 372 TLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKA-ESADVIIVTSDNPRSEDPKKIMEE 430 Query: 432 IIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I+ G+ I+ +R AI TA++ +K DV+ VAGKGHE V G K+ D D Sbjct: 431 IVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKGHEAYQEV-KGVKRPFADAD 486 >gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 495 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 171/470 (36%), Positives = 242/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12D] gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D] Length = 514 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 239/486 (49%), Gaps = 34/486 (6%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI GA A++ + A +R Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ YG PE ++ VTGT+GK+S + ++ Q + G Sbjct: 92 ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + A TTP I L ++L+ L G +++E SSHGL+Q R+DG Sbjct: 148 AVVGTLGTGFVDGLAVTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T Y AK RLF P A+I DDA +++ A Sbjct: 207 CFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WPGLRAAVINRDDAAGVRLLQNA-R 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVY 313 A + G G+ V G FD P G F V Sbjct: 264 ADIETIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVS 323 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L G +A G+ + HLEKL V GR E G G + VDYAHT ++LE L Sbjct: 324 NLLAVLGALLAAGVPWPDAIAHLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQTL 382 Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + IT R + VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I Sbjct: 383 RALAPITEARGGNLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 EI G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D + Sbjct: 443 EIADGMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKGHESTQEIA-GRKRPFSDQE 501 Query: 488 IIREIL 493 +R L Sbjct: 502 HVRLAL 507 >gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 499 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/495 (31%), Positives = 250/495 (50%), Gaps = 32/495 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L++Q + + + + DSR G IFVA+ G DG +IP+A+A G IV Sbjct: 18 LLSQAYTGEVSTEQCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVT 77 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVA 130 ++ L V +T K +++ AS Y + PE I+ VTGT+GK++ A Sbjct: 78 E-----HPRPESLSDEVAWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTA 131 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 + Q+ G+ + ST+ D TTP + L + + + G ++ Sbjct: 132 TLCYQLWNWLGMRAALF---STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLF 188 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R+ G+ FTNL RDH+DYH T QAY AK LF+ L P ++ A++ Sbjct: 189 MEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSP-DAYALV 247 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 ADD +++ N + + + ++ ++ + T+ ++ ++ + L Sbjct: 248 NADDRNGSVMVQ---NCAAHLHTYAMRSHADYMAQLLGQYVDGS-TLLLDNEEVEI--KL 301 Query: 307 PGEFQVYNALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 G + YN G+ + +D +L+L + L V GRF+ + + RG + VDYAH Sbjct: 302 VGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE +LK + + + ++ VV G GGDRD GKRP MG+IA ++ D +T DNPRSED Sbjct: 361 TPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSED 420 Query: 425 PEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 P+ I +++ GIP +R +AI A + D++V+AGKGHET + G Sbjct: 421 PQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-EGV 479 Query: 480 KKMSVDCDIIREILG 494 + D +++REI Sbjct: 480 RHHFDDKEVVREIFA 494 >gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 534 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 154/483 (31%), Positives = 259/483 (53%), Gaps = 24/483 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIR 87 +I+ +S DSR + G +F I G K+DGH ++ +++G A+V S + + Sbjct: 53 EISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVSAVVAQYDCLSSEQKKLLTQ 112 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQ 146 + P+++V ++RK ++ AS+ Y +P + L VTG +G + V I + S + Sbjct: 113 IDIPVILVTDSRKAFAILASKYYN-YPGDSLRVTGVTGTKGKTTTVNLIDKLLSEGKEVK 171 Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G TI++ D TTP P+ L + L + + G +HV++E SSH + Q R+ G+ Sbjct: 172 TGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASHVTLEVSSHAISQLRIAGV 231 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESP----AIIYADDAYSKEV 256 L +TNL +H+DYH Y K R+F + L P+++ A+I DD Y+ + Sbjct: 232 DLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEKNDKPKLAVINLDDKYASYM 291 Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +++ +VL+ G+ + + K + ++ I+ +F PL G+F YN Sbjct: 292 LEQP---AVQVLTHGFDENAHVKGKIINTAETFTELKITSPWGNFTVKTPLIGKFNCYNL 348 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI ++ + LE+ +PGRFE + + VD+AHT++SL+ +L++ Sbjct: 349 LAAITVALFEGIPASKIQTILEQPINIPGRFERIDLGQEF-TVVVDFAHTTDSLQEVLQS 407 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R + SG+I VVFGCGG+RD+ KRP MG+ A DL D +T DNPR+EDP+KI +I+ G Sbjct: 408 LRQMVSGKIGVVFGCGGERDKSKRPKMGRAASDLGDKIFITSDNPRAEDPQKIVQDILSG 467 Query: 436 IPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + +R +AI ++ + D +++AGKGHE + NG+ D +I R Sbjct: 468 CDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLIAGKGHEATQEI-NGKVINFDDREIAR 526 Query: 491 EIL 493 E L Sbjct: 527 EKL 529 >gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa SC2] Length = 495 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 242/473 (51%), Gaps = 55/473 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR +Q G +F+ + G DGH + QA+A GA A+VV + P Sbjct: 26 IGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAAALVVERELDVP---------VPQ 76 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LVV + R +++ A ++ + + +TGT+GK+++ +++I Q +G+++ IG T Sbjct: 77 LVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITYLIEKIMQDAGVNTGLIG-T 135 Query: 151 STISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + Q + TTP + L + L ++ QGV +E SSH L+Q R+ G Sbjct: 136 IQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFRTAI 195 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH T + Y AK LF L A++ ADD S + + Sbjct: 196 FTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNSKYAVLNADDPASSYLQAQT- 254 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEFQV 312 +V++ G ++K + ++TIS +G F D + G+F V Sbjct: 255 --AAQVITYG-------VEKDSDVQ-ASRITISAKGTSFHVSTFKGETDIELRMVGKFNV 304 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YNAL A + GI + LE + V GR E V + VDYAHT + LE + Sbjct: 305 YNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFA-VIVDYAHTPDGLENV 363 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ ++ +G++ VFGCGGDRD+ KRP+MGKIA +D + +T DNPR+EDP I +I Sbjct: 364 LRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPIVILKDI 423 Query: 433 IHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G+ I++G +R AI A+EM + DV+++AGKGHET ++ Sbjct: 424 EQGL---IDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAGKGHETYQLI 473 >gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM 17241] Length = 483 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 239/483 (49%), Gaps = 37/483 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ +I V+SDSR ++ G +FV I G + DGH + +A GA AI+ A L++ Sbjct: 17 RDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAGAAAILCERAIGLENE--- 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 +V +T + YG + + VTGT+GK++V+ V+ I + +G Sbjct: 74 -------IVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTVSYMVKHILESAGHQ 126 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG + I + TTP P+ L L+ ++ G +V +E SSH LDQ RL G+ Sbjct: 127 TGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVMECSSHALDQQRLAGL 186 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-H 261 + + FTNL +DH+DYH ++Y++AK +LF A + DDAY + + H Sbjct: 187 RFASVGFTNLTQDHLDYHGDMESYYHAKKKLFSMC----DAAAVNMDDAYGERLAAEVRH 242 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 S K + + + I +G P+PG+F V NA+ AA + Sbjct: 243 ICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLPIPGDFSVANAMTAAVM 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT 378 C+A+G+ + L V GR E + T G YV DYAH+ + LE I+ ++ Sbjct: 303 CMALGLTLEQAAQGLNTCQGVVGRIEVLPT----GTDYVVIRDYAHSPDGLEKIITTMKK 358 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 GR++ +FGC G+RD+ KR M +I L+D I+T DNPR ED +I I PG Sbjct: 359 FARGRVVTLFGCAGNRDRTKRKKMAEIVARLSDFVILTSDNPRDEDEMQI---IEDAKPG 415 Query: 439 FIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +E +R AI A+ K DVL++AGKGHE ++ +GE + I+ Sbjct: 416 LLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKGHEDYQVL-HGETICFDERQIVL 474 Query: 491 EIL 493 E+L Sbjct: 475 ELL 477 >gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia billingiae Eb661] Length = 471 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 159/479 (33%), Positives = 239/479 (49%), Gaps = 30/479 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +FVAI G+ DG FIPQAIAQG A++ + +D T P++ + Sbjct: 4 DSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y + P + L + G +G + + Q + Q L +G T + Sbjct: 64 AQLSQRLSALAGRFY-QQPGDKLRLIGVTGTNGKTTTTQLLAQWGQL----LGETGAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + TT S + + + L L QG T ++E SSHGL QHR+ + A Sbjct: 119 TVGNGLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL RDH+DYH Y AK LF E + I+ ADD + +++ +A Sbjct: 179 AFTNLSRDHLDYHGDMARYEAAKWLLFSE--HQVGQIIVNADDEVGRRWLQKLPDAVAVT 236 Query: 268 LS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G G+++ +V N ++ + + L G F V N LVA G + Sbjct: 237 MEDNIDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G ++ +L V GR E + + VDYAHT ++LE L+ R +G+ Sbjct: 297 ALGYPLDSLIATGNQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAARLHCTGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + VFGCGGDRD+GKRP+MG IA +D+ ++TDDNPRSEDP I A+I+ G+ ++ G Sbjct: 356 LWCVFGCGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGL---LDAG 412 Query: 444 ------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R +A+ + + D+++VAGKGHE IV N S + R +LG+I Sbjct: 413 RARVMPGRAQAVTNTVMQAQEGDIVLVAGKGHEDYQIVGNRRLDYSDRITVAR-LLGVI 470 >gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 471 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 236/467 (50%), Gaps = 43/467 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y + P + L + G +G + + Q + Q + L +G T + Sbjct: 64 SQLNERLSALAGRFYNE-PSDQLKLVGVTGTNGKTTTTQLMAQWAQL----LGETGAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + + L+ L+ QG T ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---- 263 FTNL RDH+DYH + Y AK L+ AII ADD + +++ +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYS--THHHGQAIINADDEVGRRWLEKLPDAVAVS 236 Query: 264 -------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 CR G+++ +V + + + + + L G F V N L Sbjct: 237 MEDRINPNCR-------GRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLL 289 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A +A+G A +L+ E+L V GR E + + VDYAHT ++LE L+ Sbjct: 290 LALATLLALGYPMADLLKTSERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAA 348 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +G++ VFGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I + Sbjct: 349 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDI---L 405 Query: 437 PGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G ++ G R EA+ AI + DV+++AGKGHE IV N Sbjct: 406 AGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 452 >gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cellvibrio japonicus Ueda107] Length = 521 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 238/469 (50%), Gaps = 36/469 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G IF+A+VG + DG FI A+ QGA A+ V + Q P++ + Sbjct: 31 DSRQVKQGDIFIALVGTRADGRQFIANAVEQGAAAVFVEADKEWQGVHWI--GEVPVIAL 88 Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS----SFQIG 148 + LS A R Y HP ++ +TGT+GK++ + + Q+ +G+S S IG Sbjct: 89 EQLTARLSELAGRYYA-HPSRELRLVGITGTNGKTTCSLLLAQLL--AGVSGQGCSAVIG 145 Query: 149 -------------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 P + S LTTP P+ L + L L + G + ++E SSH L Sbjct: 146 TLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVALQRILRQLRTGGASSAAIEVSSHSLQ 205 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+ G+ FTNL +DH+DYH +Y AK L +P A+ DDA+ K Sbjct: 206 QKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKAKAELL--FMPGLKHALFNMDDAWVKA 263 Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + + AG + Q ++L+ + + + + +F PL G F + N Sbjct: 264 LAAKT-PAGVSAIGFSLQEPADVYLRDIHLHASGASAWLVSPWGEAEFHSPLLGLFNLSN 322 Query: 315 AL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEM 371 + V + CI G VL + L PGR + V + + ++ VDYAHT ++LE Sbjct: 323 LVAVVSAACIQ-GAPLEQVLALVPHLVAAPGRMQPVVVDADVQEIQVLVDYAHTPDALEN 381 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 LK IR + RI VFGCGGDRD+ KRP+MG+IA L+D IVT+DNPRSEDP +I A+ Sbjct: 382 TLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIAEKLSDYVIVTNDNPRSEDPARIAAD 441 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I+ G+ G + +R +AI A++ D++++AGKGHE I + Sbjct: 442 IVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVLIAGKGHEDYQIFAD 490 >gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria mucosa ATCC 25996] Length = 492 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 158/456 (34%), Positives = 225/456 (49%), Gaps = 35/456 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP AIA GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K AII DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGTIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + +H T S +G + F P L G F N Sbjct: 258 LAV-YGYGFSEHADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P + +R AIR ++E D++++AGKGHE Sbjct: 432 PAPECVEADRAAAIRYSVERAAANDIILIAGKGHEN 467 >gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia nassauensis DSM 44728] Length = 495 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 150/456 (32%), Positives = 234/456 (51%), Gaps = 33/456 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ VS S ++ G ++VA+ G + G F+ +A+ +GA A V+S ++ ++ A + Sbjct: 34 EVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVA-VLSDSWGVE---AAVEH 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L + R + +S +YG+ + +++ +TGTSGK+S A V+ + +G + Sbjct: 90 GLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTGL 149 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T I + + TTP L +Y QGVT + +E SSH L HR +GI Sbjct: 150 IGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVSSHALTLHRAEGISFA 209 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----- 260 G FT G DH+D+H T YF AK +LF+ E ++ ADDA++K ++ Sbjct: 210 VGGFTMFGLDHLDFHPTVDEYFAAKAKLFDGRCRVE---VVNADDAWAKRLVTPDTVTYS 266 Query: 261 ---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 NA V S+ G F +V + H + ++ LPG + NAL+ Sbjct: 267 LVDANATWSVDSITGSG-FDQSFEVTSPHGRHHGSVR-----------LPGRHNIANALL 314 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G A+G+ + + VPGR E V ++ + VDYAH +++ +L+ +R Sbjct: 315 AYGCLTAVGVPVETAIAGVADCAGVPGRMELVSEDNPVHGV-VDYAHKPDAITAVLEALR 373 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 ITSG +I V G GGDRD KR +MG A AD+ IVTDDNPR+EDP +RA ++ G+ Sbjct: 374 PITSGSLIAVIGAGGDRDPSKRTLMGDAAARAADLVIVTDDNPRTEDPAAVRAGVLAGVG 433 Query: 438 G--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E +R AI A+ D + + GKGHE+ Sbjct: 434 DRPHLEVADRATAIDEAVARAKPGDTIALLGKGHES 469 >gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 541 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 165/523 (31%), Positives = 249/523 (47%), Gaps = 73/523 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ V++DSR G +FVA+ G++ DGH F+ A+ QG ++ L A Sbjct: 24 ELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVVLCQPGCRLPTEKA-- 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 L +TR + L G + + + +TGT+GK++ + ++ + +R+G Sbjct: 82 -PEVLHLATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYLLEDLIRRAGGEP 140 Query: 145 FQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG + + NR+ TTP P L L ++ GV+HV +E SSH L+Q R+ Sbjct: 141 GVIGTVN----YRYRNRVLPATHTTPDPESLQPLLREMAEAGVSHVIMEVSSHALEQQRV 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDA--- 251 GI A FTNL +H+DYH ++YF K LF L + A++ + DDA Sbjct: 197 AGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRYLKPGAAAVVLSGRAEQDDASLD 256 Query: 252 -----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI------------- 293 E+ R GCR + + L + A N+ ++ Sbjct: 257 CWNQRLIDELSPRVLPPGCRRRP---KAGEVRLWRCGAAGNELRLLRRRLSLAGIEAELQ 313 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S EG + L G+F + N L AG+ +A+G+ A + L PGR E + Sbjct: 314 SSEGA-WRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAALADAAPPPGRLERF-RSR 371 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 RG + VDYAHT ++L +LK +R + +GR++VVFGCGGDRD+ KRP+MG++A LADI Sbjct: 372 RGVEVLVDYAHTPDALGHVLKALRRLATGRLVVVFGCGGDRDRAKRPLMGEVAAALADIV 431 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------------------AI 449 ++T DNPRSE P I A+I G+ + R+E AI Sbjct: 432 VLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLNRRTTCQGYDLVVSRRQAI 491 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 R I DV++V GKGHET I+ +D D RE+ Sbjct: 492 RDTIYHARSGDVVLVCGKGHETSQIIAGS----CLDFDDRREV 530 >gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216] Length = 486 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 250/479 (52%), Gaps = 29/479 (6%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ELI + ++ + +++ ++ DSR I G F A+ G + DGH +I A+ Sbjct: 2 KQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTA- 60 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 ++A Q + + +VV +T ++ A+ YG + + +TGT+G Sbjct: 61 -----GAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K++ + + + + G +++G ST+ R+ TTP I L + ++ + G Sbjct: 116 KTTTVTLLYDLFRGLG---YKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAG 172 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E SSH + Q R+ G+ G F+N+ DH+DYH+T Y AK +LF + LPKE Sbjct: 173 CEYCFMEVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAK-KLFFDNLPKE 231 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + A+I DD + VM + A + LS+ F K+ H + + ++G++ Sbjct: 232 AFALINIDDRNGR-VMVQNTRATVKTLSLQSMADF--RCKILETH-PDGMELRIDGREVW 287 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F G F YN L + +G D VL+ + LH V GRFEFV + G VD Sbjct: 288 VHFL--GRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRA-ADGTTAIVD 344 Query: 362 YAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 YAHT ++LE +L+ + I ++ V+ GCGGDRD+ KRP M +IA+ A AI+T DN Sbjct: 345 YAHTPDALEKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDN 404 Query: 420 PRSEDPEKIRAEIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 PR EDP+ I +++ G+ PG ++ +R EAIRTA + D+L++AGKGHET IV Sbjct: 405 PRHEDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKGHETYQIV 463 >gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 502 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 244/480 (50%), Gaps = 38/480 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + +DSR I+ G +FV + G DGH + QAI GA AIV S + N Sbjct: 23 ITNLDTDSREIRPGGMFVCVPGYHVDGHDYAEQAIRNGAVAIVAERELS------GLSEN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ V +TR+ L + A+ YG + ++ +TGT+GK++ V +I + + I Sbjct: 77 VTLITVPDTRRILPILANAFYGDPTQRLKLIGITGTNGKTTTTHMVDKILNDARRKTGII 136 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + A+ TTP I L + + S G + +E SSHGLD R+ G Sbjct: 137 GTLYMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGGEYGVLEVSSHGLDMGRVRGCDFQT 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE----SPAIIYADDAYSKEVMKRAHN 262 FTNL DH+D+H+T ++Y N K LF +L A++ ADD S KR Sbjct: 197 VVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNSNRDMLKKAVLNADDDASSYYAKRT-- 254 Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ G Q + H ++ CA H + S + + G +YNA Sbjct: 255 -SAQIITYGIQNQADVRATHIHHTREGCAFHAETPWGSS------EVNLKVHGAHNIYNA 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A C+ GI + E L + V GRF+ + T R G + VDYAH + L+ L++ Sbjct: 308 LAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGRRFG-VVVDYAHNPDGLKATLQS 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + ITSG++I V GC G+RD+ KRPIM IA AD + T DNP SEDPE+I AE++ G Sbjct: 367 AKAITSGKMICVMGCRGERDRSKRPIMADIASSYADYVLFTADNPFSEDPEQIMAEMLGG 426 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + E GN R EAI+ A+EM +D +++ G+GHET ++ + + S D DI+ Sbjct: 427 LTSR-ESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRGHETRYVTGSRIESFS-DEDIV 484 >gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola At-22] gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Klebsiella sp. 1_1_55] Length = 495 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 161/471 (34%), Positives = 241/471 (51%), Gaps = 33/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D Sbjct: 19 ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAEDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + LS L QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + ++ A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312 + +A + + G++ LK ++ TI + + + L G F V Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGNGEIESRLMGAFNV 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE Sbjct: 310 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKA 368 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I Sbjct: 369 LQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI 428 Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Citrobacter sp. 30_2] Length = 495 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 238/467 (50%), Gaps = 29/467 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVA++G++ DG +IPQAIAQG AI+ + D Sbjct: 19 ERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P + + G +G + + Q + Q S L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HEPSEKMRLVGVTGTNGKTTTTQLLAQWSQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L+ L++QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + +K A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + Sbjct: 194 VAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A + + G+++ V + + + D + L G F V N Sbjct: 252 KLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGEIESRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE L+ Sbjct: 312 LLLALATLLALGYPLADLLKTATQLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKALQ 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +G++ VFGCGGDRD+GKRP+MG IA AD+ +VTDDNPR+E+P I +I Sbjct: 371 AARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDI-- 428 Query: 435 GIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G ++ G R EA+ AI + DV++VAGKGHE IV Sbjct: 429 -LAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQIV 474 >gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium striatum ATCC 6940] Length = 521 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 244/478 (51%), Gaps = 35/478 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ S DS+ I AG +F A+ G + G F A A +++ LQ Sbjct: 24 VSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTEA----AAILTDEAGLQHLQEA-GER 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 PI+VV++ R L L A+ +Y +HP L V G +G S + ++ +G Sbjct: 79 RPIIVVEDIRAVLGLIAAEIY-EHPTEHLTVLGVTGTSGKTTTSYLLEAGLLHAGHKVGL 137 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T T I+ +LTTP L + + + +GVTHV +E SSH L+ R+ G + Sbjct: 138 IGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVVMEVSSHALELGRVRGTQFD 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTNL +DH+D+H T + YF AK LF+ S A+I DD + K + ++ Sbjct: 198 VGGFTNLSQDHLDFHPTMEDYFAAKAALFDGA-QAASAAVICVDDDWGKRMAQQVAGKPL 256 Query: 266 RVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++S + + K+V + Q V +S G+ + F P+PG+F + NA +A Sbjct: 257 TLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGETYSFELPMPGKFNIANAALA 316 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNI 376 AG+ A+G+D+ L +E++ VPGR E + SRG VDYAH ++ +L + Sbjct: 317 AGMAAAVGVDTETFLNGVERV-AVPGRMESI---SRGQDFVAVVDYAHKPAAIAAVLDTL 372 Query: 377 R---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R + T GR+ VV G GGDRD KRP+MG A + AD+ +VTDDNPRSEDP IRA ++ Sbjct: 373 RGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVTDDNPRSEDPAAIRAAVM 432 Query: 434 HG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G E G+R AI +E D ++V GKGHE IV G++ + D Sbjct: 433 AGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKGHEVGQIV--GDETLHFD 488 >gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus coleohominis 101-4-CHN] Length = 488 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 158/478 (33%), Positives = 245/478 (51%), Gaps = 39/478 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + K+ V+ D+R + G +F+AIVG DGH FIPQAIA+GA+ I+ Sbjct: 19 EFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKGAQMIIAQEP------- 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + + P++ V +T + ++ A + YG +++ + VTGT+GK++V ++++ G Sbjct: 72 --VETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTVTHLIEEVFHDLG 129 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG ++ TTP + K L+ + V VS+E SS L Q R+ Sbjct: 130 EGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANVKTVSMEVSSIALVQGRVW 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMK 258 GI FTN DH+ YH+T Y AK LF ++ S A++ DD +E + Sbjct: 190 GINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSGKTAVMNIDDPVGREFID 249 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFP--------LPGE 309 +L+ G + H + A H + I++ G +FD +F L GE Sbjct: 250 YT---TSNILTYGIK----HQADIYADH----IKITIHGTEFDLHVFDEVKHVKTHLIGE 298 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYN+L A G A G A +++ L ++ V GRF+ V +N+ G + VDYAHT + L Sbjct: 299 FNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNT-GVSVIVDYAHTPDGL 357 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L+ + + GCGGDRD KRP M KIA+D + AI+T+DNPR+EDP KI Sbjct: 358 LNVLETLNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDNPRTEDPHKIM 417 Query: 430 AEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ GI NR EAI+ A+ D +++AGKGHE I+ G+ K D Sbjct: 418 DDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKGHEDYQII--GKTKHHFD 473 >gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae 35/02] gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae TCDC-NG08107] Length = 492 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 169/511 (33%), Positives = 241/511 (47%), Gaps = 45/511 (8%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L DFP P+ + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETDFP---------PLPCANAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQD----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 A+A GA A+ D F+ P + + + + A+++YG ++ Sbjct: 55 AAVANGA-------AFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDDL 107 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174 + VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 108 KVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETAHTTPAPVDVQTLL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 168 YRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 K A+I DD Y E+ R C L+V G H A T S Sbjct: 228 YWHGLKH--AVINTDDGYGAELAGRLKK-DCPDLAVYSYGFSEH-----ADIRITDFTAS 279 Query: 295 VEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +G + F P L G F N L A G VL+ L K+ GR Sbjct: 280 SDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLAKIRPASGR 339 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMG 403 + + NS + VDYAHT ++LE L ++ I + VFGCGG+RD GKRP+MG Sbjct: 340 MDCI-MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMG 398 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462 A+ AD +VT DNPR E+P+ I +I+ +P + +R AIR A+E D++ Sbjct: 399 AAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVEQAAANDII 458 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKGHE V + + S D +I+ + L Sbjct: 459 LIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH 8501] Length = 501 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 161/501 (32%), Positives = 244/501 (48%), Gaps = 37/501 (7%) Query: 6 LIYKDFPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L K L+N LS P ER++ +S++S Q G IF+ + G + DG F Sbjct: 2 LTSKKLQYLLNNLSNIPSLPNHSALEREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQ 61 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 A+ GA A ++S + Q F + + +++V++ + A+ Y + + V Sbjct: 62 SAMEVGAVAAIISPQ-AAQKFPP--KDDDCVIIVEDIITVAAQIAAAFYDYPAQQLKMVG 118 Query: 122 GTSGKSS------VASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPI 168 T V F+ Q CQ+ PT+ I + F + TTP Sbjct: 119 ITGTNGKTTTTHLVEYFLNQ-CQK---------PTALIGTLYTRWPGFERTAVHTTPFAP 168 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L + L+ + + +E SSH L Q R+ FTNL +DH+D+H+ + YF Sbjct: 169 ELQEQLAEAVAANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKDMEDYFA 228 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 AK LF +E AI+ DD Y K ++ SV + + N Sbjct: 229 AKRLLFTPDYLQEK-AIVNLDDPYGKRLIDSFQTEQVWTYSVEDTKADFYTSNLTYQANG 287 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 T++ + +F PL G+F + N L A + +G+D V+E L VPGR E Sbjct: 288 VTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFLGVPGRMER 347 Query: 349 VGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V N + + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+ + Sbjct: 348 VQINDKQDISVIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKRPLMGQASA 407 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464 LAD+++VT DNPR+EDP++I +++ GIP IE +R +AI TAI N D +++ Sbjct: 408 QLADVSVVTSDNPRTEDPQRILEDVLTGIPETIEPLVISDRAKAINTAILQANPGDGVLI 467 Query: 465 AGKGHETVHIVTNGEKKMSVD 485 AGKGHE I+ G +K+ D Sbjct: 468 AGKGHEDYQIL--GTEKIHFD 486 >gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198] Length = 921 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 176/503 (34%), Positives = 261/503 (51%), Gaps = 30/503 (5%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P L + L +Q + +++ DSR +G +F+AI G++ DG +IPQAIAQG A+ Sbjct: 430 PNLSDLLGALGIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGVSAV 489 Query: 72 VVSSAYSLQDFS--ATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125 + + QD + IR + PI+ +DN LS A Y + E + + VTGT+G Sbjct: 490 LAEA----QDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNG 545 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K++ + Q Q G S +G T+ + D+ + TT S + + L L +QG Sbjct: 546 KTTTTQLLAQWAQGLGEISAVMG---TVGNGLLDHVVPAMNTTGSAVDIQLELQQLLNQG 602 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 T ++E SSHGL Q R+ + +A FTNL RDH+DYH Y AK LF E Sbjct: 603 ATLTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHHSGE 662 Query: 242 SPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II ADDA ++ + R +A L +QG+F+ ++ + S Sbjct: 663 K--IINADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSW 720 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + PL G F V N L A +A+G V+ L V GR E N+R Sbjct: 721 GEGIIESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRP-T 779 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG +A +LAD ++TD Sbjct: 780 VIVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELADKVVITD 839 Query: 418 DNPRSEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 DNPRSE+P+ I +I+ G+ PG I R EA+ I + D+++VAGKGHE + Sbjct: 840 DNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKGHEDYQL 899 Query: 475 VTNGEKKMSV-DCDIIREILGLI 496 V G +++ D + +LG+I Sbjct: 900 V--GSRRLDYSDRLTVARLLGVI 920 >gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Megasphaera genomosp. type_1 str. 28L] Length = 499 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 245/469 (52%), Gaps = 34/469 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +++DSR +Q G +FV + G DG F QA A+GA A++ + L D + I Sbjct: 24 QVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAAKGAVAVLTTEPLPLPDGTVQIIV 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V+ F + + ++ VTGT+GK++ + I + +G + +G Sbjct: 84 PDIHAAVEEMVPFFYDYPGKKM-----RMIGVTGTNGKTTTTHIIAHILRTAG---YHVG 135 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI + D L TTP + L + L+ + ++G+THV +E SSH L R+ GI+ Sbjct: 136 VLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVVMEVSSHALALQRVAGIEY 195 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKR 259 FTNL +DH+D+H+T + Y AK +LF L + K A++ DD +S V+ R Sbjct: 196 DTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVKKGKTAVLNRDDPWS--VLMR 253 Query: 260 AHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 VL+ G + + HL+ V H+ VT D + G F VYN Sbjct: 254 KACGTAEVLTYGTEREASLRGTHLQ-VALKHSAFDVTGPF--GDMHLQMNITGLFNVYNT 310 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G A G+D + + ++ H VPGRFE V I VDY+HT +SLE L Sbjct: 311 LAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELVEAGQDFA-IVVDYSHTPDSLEKALTT 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R + +IIVVFGCGGDRD+ KRPIMG+IA ADI +VT DNPRSE+PE I AE+ G Sbjct: 370 ARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDNPRSENPEAIVAEVAAG 429 Query: 436 IPGFIEKGNRIEAIR-------TAIEMLNKQDVLVVAGKGHETVHIVTN 477 + ++ G + E + A+ + N D++++AGKGHET I+ + Sbjct: 430 VKEALQPGQQYEVLTDRRRAIRRAVALANTGDMVLIAGKGHETYQILKD 478 >gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrobacter xylanophilus DSM 9941] Length = 512 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 241/486 (49%), Gaps = 50/486 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ DSR ++ G+ FVA+ G K DG F+P+A+ +GA +V Sbjct: 43 RVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVP---------- 92 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+ VV + R L+ A +G HP + VTGT+GK++ + + Sbjct: 93 EAPVAVVPDARAALAALACAFHG-HPSRRMEVYGVTGTNGKTTTCYALHAVLA-GAFGEE 150 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G +T A R TTP + AL+ + +GV V++E SSHG+ R++G Sbjct: 151 RCGLMTTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEG 210 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I+ FTNL RDH+D H T + Y+ K RLF L P + ADDA+ + + Sbjct: 211 IRFAGAVFTNLSRDHLDLHGTMEEYYRTKRRLF---LWARGPKLSNADDAWGRRLAGEVE 267 Query: 262 NAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +VG + ++ A + + + + +E PL G++ V NA Sbjct: 268 GVRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIE-------VPLFGDYNVQNAAG 320 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AA L + +G+ V L + VPGRFE VG G + VDYAHT LE +L+ R Sbjct: 321 AAALALELGVPGETVARALRGMPQVPGRFERVGGP--GFEVIVDYAHTDVGLEAVLRVAR 378 Query: 378 TIT----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + GR+I VFG G+RD KRP+MG++A LAD I+T D+ SEDPEKI E+ Sbjct: 379 EVARRGRPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYSEDPEKIAREVA 438 Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G +E G +R EAIR A+ + DV+VVAGKGHE V + G+ D Sbjct: 439 AG----VEDGRLEIVLDRREAIRRALSEAGEGDVVVVAGKGHERVQHLPWGDVPFH-DAT 493 Query: 488 IIREIL 493 +IREIL Sbjct: 494 VIREIL 499 >gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18] Length = 505 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 171/495 (34%), Positives = 240/495 (48%), Gaps = 62/495 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR ++ G +F A+ G K DG F+ A+ GA A+V D + Sbjct: 22 EITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGGAVAVVA-------DRPCAVAG 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 T I V D R+ +SL A+ YG I V T + ++ I +++G+ + Sbjct: 75 VTCIEVPD-PRRAMSLMAALFYGVPTAGIPLVGITGTNGKTTTTYLMEGIMEQAGIPTAV 133 Query: 147 IGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S +S N TTP + L + L L QG +E SSH L+Q R DG Sbjct: 134 LGTISYRFGATSIPAPN--TTPESVDLQQILRDLVDQGAKGAVMEVSSHSLEQRRADGCL 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVMK 258 FTNL RDH+DYH ++Y+ +K+RLF +LL E P A++ DD Y + Sbjct: 192 FDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPLRRAVVNLDDPYGARIAA 251 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGE 309 A VL+ G A +V SV G + D L G Sbjct: 252 EAAAP---VLTYAAAGP--------ADLTVAEVEFSVHGIRCRLNSPVGEIDIDSDLLGR 300 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F +YN L A G +A+GI + + VPGR E V N +G + VDYAHT ++L Sbjct: 301 FNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERV-PNDQGIIVLVDYAHTGDAL 359 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L I + + RII +FGCGGDRD+GKRP+MG+IA +D+AIVT DNPR+E+P+ I Sbjct: 360 ENVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAIVTSDNPRTEEPKAIL 419 Query: 430 AEIIHGIP--------------GFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I GI G EKG +R A+R AI D++++AGKGHE Sbjct: 420 DDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAIMAARPGDIVLLAGKGHE 479 Query: 471 TVHIVTNGEKKMSVD 485 IV G +K D Sbjct: 480 DYQIV--GTEKFHFD 492 >gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2] Length = 495 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 235/478 (49%), Gaps = 53/478 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I + +DSR + G +F+ + G+ DGH + PQA A+GA A VV L Sbjct: 20 DTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKGAVAFVVERELEL------- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 + P L+V ++R +++ A YG HP N L + G +G + + ++QI + + Sbjct: 73 --DAPQLIVKDSRLAMAVLADHFYG-HPSNALHLIGVTGTNGKTTTTYLIEQILNDNDRN 129 Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 S IG SF TTP + L + LS + +G + ++E SSH L+Q R+ Sbjct: 130 SGVIGTVEMRYAGKSFPMSG--TTPEALQLQQYLSDMRKEGTAYCAIEVSSHALEQGRVK 187 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYS 253 G + FTNL +DH+DYH T + Y AK F L + A++ DD S Sbjct: 188 GCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAEDRAYAVLNVDDPVS 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLF 304 ++ K V++ G A + IS +G F D Sbjct: 248 EQFAKLT---AAEVITYGIDNH--------ADVRASNIRISAQGTTFRVSTFRGKTDIAL 296 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 + G+F VYNAL A + G+ + LE + VPGR E V + VDYAH Sbjct: 297 QMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQAGQEFA-VVVDYAH 355 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + LE +L+ ++ + RII VFGCGGDRD+ KRPIMG IA AD +VT DNPR+ED Sbjct: 356 TPDGLENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAARYADYVLVTSDNPRTED 415 Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P+ I +I G+ + K +R AI A+EM + DV+++AGKGHET I+ Sbjct: 416 PDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVLIAGKGHETYQII 473 >gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 495 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 241/472 (51%), Gaps = 35/472 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D Sbjct: 19 ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + LS L QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + ++ A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQ 311 + +A + + G++ LK ++ TI S GK + L G F Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I + G ++ G R EA+ A+ + DV++VAGKGHE IV N Sbjct: 428 I---LAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii AB900] Length = 499 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW + + S DSR ++ G IF+A+ E F A+A GA A++ + + + Sbjct: 16 QWPRQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLY----GKHPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R G P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304 A + ++ A N + + Y L + A + ++ S+ G F+ + Sbjct: 238 AQADLMINSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSQQGSFA 292 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463 >gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii SH046] Length = 498 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 245/465 (52%), Gaps = 36/465 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 +W + DSR +QAG IF+A+ + E F A+ +GA A+V + +L + Sbjct: 16 EWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKTEQFAQIALDKGALAVVSETELALAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + N L+ ++FL L S++ P ILAVTGT+GK++++ V ++ G Sbjct: 76 --SIVVPNVRHLMGGWQKQFL-LATSQV---QPARILAVTGTNGKTTISRLVAELLMLQG 129 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 S +G T I + + TT ++L AL + QG S+EASSHGL+Q RL Sbjct: 130 KSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSHGLEQGRLA 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G ++ +++NL RDH+DYH T + Y AK RLF+ P A+I DD ++ +++ A Sbjct: 190 GSEIEIAAYSNLSRDHLDYHGTLEVYAEAKSRLFQ--FPSLKVAVINLDDEHAGVMIQAA 247 Query: 261 HN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGE 309 N A ++L+ +L K + S+ G +F PL G Sbjct: 248 QNNPAQPKILTYSTTQPADYLVK--------NIQYSLTGANFSLCTAQAEYQVQNPLLGH 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F + N + + + G D A V+ +L PGR + + ++R VDYAHT ++L Sbjct: 300 FNIENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIRDDAR--LFVVDYAHTPDAL 357 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L ++ ++ VFGCGGDRD+GKRP+M + AL+ AD+ ++T DNPR+E+PE+I Sbjct: 358 VQVLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQAALNGADVVLLTSDNPRTENPEQIF 417 Query: 430 AEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 A++ GI E +R EAI+ A++ D++V+AGKGHE Sbjct: 418 ADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHE 462 >gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus nematophila ATCC 19061] Length = 495 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 168/497 (33%), Positives = 247/497 (49%), Gaps = 22/497 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L + L+++ + E + E++ DSR AG +FVA+ G++ DG +IPQAIAQG A++ Sbjct: 6 LRDLLALWGIDIPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGVAAVIA 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + P++ +D+ LS A Y +HP N L + G +G + + Sbjct: 66 EAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTTTT 124 Query: 134 QQICQRS---GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 Q + Q S G +S +G + + TT S + + L L +Q T ++E Sbjct: 125 QLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFAAMEV 184 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R+ + A FTNL RDH+DYH Y NAK LF K+ II AD Sbjct: 185 SSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHDVKQK--IINAD 242 Query: 250 DAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DA ++ + R A L +QG+++ +V + + P Sbjct: 243 DAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSCWGSGTLNSP 302 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F V N L+A +++ +L L V GR E R + VDYAHT Sbjct: 303 LMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRP-TVVVDYAHT 361 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE L R G++ VFGCGGDRD+GKRP+MG +A AD IVTDDNPRSE+P Sbjct: 362 PDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAELGADRVIVTDDNPRSEEP 421 Query: 426 EKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I A+I+ GF++ G R+EA+ +A+ + DV++VAGKGHE +V N Sbjct: 422 HSIVADILK---GFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKGHEDYQLVGNRR 478 Query: 480 KKMSVDCDIIREILGLI 496 S + R +LG+I Sbjct: 479 LDYSDRLTVAR-LLGVI 494 >gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402] Length = 458 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 151/471 (32%), Positives = 242/471 (51%), Gaps = 34/471 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTP 91 + +DSR ++ G F+AI DGH +I QAIA GA I+ +Y ++ Sbjct: 5 LKTDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEHGSYKVE----------- 53 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V++TR++L + Y ++I + +TGT+GK++ QI + + + Sbjct: 54 TIIVESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILK---MLKKNVAY 110 Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 TI + D + TTP L L GV + +E SSH LD+ R+ G++ Sbjct: 111 MGTIGFYYGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFD 170 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 +FTNL +DH+DYH+T + Y NAK LF + + AII DD + + + ++N Sbjct: 171 EVAFTNLTQDHLDYHKTLENYANAKRILFTKT-RNDKIAIINGDDEHYQHFVLESNNN-- 227 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +G + + ++ H ++ + G + +YN L+A L + Sbjct: 228 --IIIGQHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKL 285 Query: 326 GIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G+ +L +KL GR E + GTNS I+VDYAHT +++ +LK+ +GR Sbjct: 286 GVKIEDILALNDKLKAPAGRMELLKYGTNS----IFVDYAHTPDAVINVLKSAEEFKNGR 341 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIE 441 II + GCGGDRD KRPIMGK AL+ +D I T DNPRSEDP+ I +I +G+ G F Sbjct: 342 IITIIGCGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEI 401 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R +AI ++ L D+L++ GKGHE I G+ S ++++ I Sbjct: 402 EVDRQKAIIKGMQQLKHNDILMILGKGHEDYQITKTGKHHFSDQEEVMKYI 452 >gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 492 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 158/456 (34%), Positives = 224/456 (49%), Gaps = 35/456 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP AIA GA A+ D F Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFEWNPEWEV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG ++ + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRST 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + +H T S +G + F P L G F N Sbjct: 258 LAV-YSYGFSEHADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P + +R AIR A+E D++++AGKGHE Sbjct: 432 PAPECVEADRATAIRYAVERAASSDIILIAGKGHEN 467 >gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10 bacterium 'Dutch sediment'] Length = 504 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 240/469 (51%), Gaps = 32/469 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++E+ DSR ++ G +FV I G + DGH FI A A GA A +V D + Sbjct: 22 EVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFIQAAWAAGAVAALVERT----DLTEAALQ 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 ++ V NTR+ L+ A R YG HP L++ G +G + + V+ + + +G Sbjct: 78 GGTVVKVANTRQSLAAVACRFYG-HPSRSLSMVGVTGTNGKTTTTYLVESVLRCAG---H 133 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 Q+G TI + L TTP L L ++ V +E SSH L HR+DG Sbjct: 134 QVGLIGTIGYRCNELELEAARTTPESCDLQALLERMARLRADSVVMEVSSHALALHRVDG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 + FTNL +DH+D+H T +AY +AK+ +FE L E A++ DD + Sbjct: 194 CEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTEKAAVVNLDDPAADLF 253 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + R S +G + + V + + + PL G + + N Sbjct: 254 LGATR---VRRYSYSVEGPADLSVADVKMGPDGIRCRLQTPWGTTAIRSPLLGRYNLSNI 310 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L AA + +G D + V + + LH VPGR E V T + + VDYAHT ++L +L+ Sbjct: 311 LAAAATGLHLGADLSAVADGIAALHHVPGRCERVETG-QAFSVMVDYAHTPDALRRVLRM 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R GR+IV+FGCGG+RD+GKRP+MG+ AL+LAD ++T DNPR EDP +I EI G Sbjct: 370 ARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELADFTVITSDNPRGEDPHQIIEEIETG 429 Query: 436 I-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G++ +R AIR A+ + + D++V+AGKGHET I+ + Sbjct: 430 AKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAGKGHETYQILRD 478 >gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC3088] Length = 487 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 149/457 (32%), Positives = 236/457 (51%), Gaps = 19/457 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ KI + +DSR G +F+A+ G+ G F+ A+A+GA I+ +L D Sbjct: 20 RDAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASGIIADEEMNLPD---- 75 Query: 86 IRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + ++VV + R + A R + K LAVTGT+GK+S + Q+ + Sbjct: 76 ---HIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTSTVQLLAQLLGELDQA 132 Query: 144 SFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + F+ + TTP + + + L+ ++Q V ++EASSHGL QHRL G Sbjct: 133 AATVGTLGFQLPTGFSPSSN-TTPDVVEIHRFLASAAAQNVRWAALEASSHGLVQHRLTG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + + TN+ +DH+DYH T Y AK ++ L A++ D ++ Sbjct: 192 LNITTAAITNITQDHLDYHGTMTEYIAAKAQI---LALSGLRAVVLDLDNPEVRALRPQV 248 Query: 262 NAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A +VL ++G + + T+ ++G ++ PL GEF + N L A Sbjct: 249 PANVQVLGFTLGEVADADAVVVAQYDADGTTATVRLDGFEYRLRLPLVGEFYLRNTLTAL 308 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + A G+ ++ +L VPGR E VG +S +YVDYAHT +++ +L+ +R Sbjct: 309 FMLRAEGLRFEDLVAAAGRLRGVPGRLERVGLDSDVA-VYVDYAHTPDAIARVLQVLRPT 367 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-G 438 + VVFGCGGDRD+ KRP+MG+ A + AD ++T DNPR+EDP KI +I G Sbjct: 368 VKNDLWVVFGCGGDRDKSKRPLMGRAAAEGADWVVLTSDNPRAEDPSKILDDIQVGCAHA 427 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + +R AI +AI + D LV+AGKGHET I+ Sbjct: 428 RLVIEDRAVAIESAIMAASPGDTLVIAGKGHETEQII 464 >gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4] gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella loihica PV-4] Length = 488 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 238/464 (51%), Gaps = 15/464 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR I G +FVA+ G++ DG ++ A++QGA A ++ + + + + Sbjct: 19 LSHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNG 78 Query: 90 TPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I R+ LS AS+LY G+ ++ VTGT+GK+SV + Q+ G + + Sbjct: 79 LRIYFFQLQRQ-LSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVM 137 Query: 148 GPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + Q D+ TT PI + + L QG ++E SSHGL Q R+D + Sbjct: 138 GTLGN-GLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFD 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH + AY AK RLF S +I DD ++ ++ G Sbjct: 197 VAVFTNLSRDHLDYHGSMDAYGAAKQRLFR--FSSLSHGLINLDDPVGRQWIQDKRCKGL 254 Query: 266 RVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ G +G I+ K+V T+ + PL G F + N + A G Sbjct: 255 VGFSIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYL 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G A +L + L V GR E T G + VDYAHT +++E L+ +R G++ Sbjct: 315 SGYAMAQLLTQVSSLKPVAGRMERF-TTQEGVTLVVDYAHTPDAIEQALRALRGHCRGKL 373 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF-IE 441 VFGCGGDRD+GKRP+M + A + AD +VT DN RSEDP I +++ G+ P + Sbjct: 374 WCVFGCGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPMAIIQDVLAGLNKPQIALT 433 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R +AIR + + + D++++AGKGHET + K++ D Sbjct: 434 QVDRQQAIREVVTLASNGDLILLAGKGHETYQEIAG--KRLDYD 475 >gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Symbiobacterium thermophilum IAM 14863] Length = 496 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 231/458 (50%), Gaps = 29/458 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR ++ G +FV I G D H FIP A+ +GA A+V ++ + + Sbjct: 18 VTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQRPWA-------VPTG 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 VV + R LS A R YG HP L VTGT+GK++ A V+ I + +G + Sbjct: 71 IGAAVVPDARLALSALADRFYG-HPSRALRMVGVTGTNGKTTTAFLVEAIARTAGKAMGV 129 Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + + TTP P + + L+ + +G +E SSH L+Q R D + Sbjct: 130 IGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVSSHALEQRRTDHCR 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +H+DYH + Y+ AK RLF L P + A++ DD Y + + + A Sbjct: 190 FDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAA-AVVNIDDPYGRRLAEEI-PA 247 Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGL 321 G R L+ G+ +G I + V + + + D P L G + V NA+ A G Sbjct: 248 GVRTLTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLFGTYNVSNAMAAVGA 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379 +A+G + L PGRFE + + + VDYAHT + E +L ++ I Sbjct: 308 GLALGFSLQDAVAALGTAKGAPGRFERI-DEGQDFTVVVDYAHTPDGFEKLLSDVARIKE 366 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 R+I+VFG G RD KRP MG+IA + D+ ++T+++PR+ED +I +I G+ Sbjct: 367 PGSRVIMVFGSAGQRDPSKRPDMGRIAGEYCDVLVLTEEDPRTEDAMEIARQIASGVARD 426 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IE +R+EAIR AI M D++++ GKG ET Sbjct: 427 EVEIHLIE--DRVEAIREAIRMARTGDIVLITGKGQET 462 >gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii ATCC 19606] Length = 499 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 158/473 (33%), Positives = 235/473 (49%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW + S DSR ++ G IF+A+ E F A+A GA A++ + + + Sbjct: 16 QWPRQPFYGFSLDSRKVETGQIFIALTSYSQPEKTRTFAEAALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------ 304 A++ ++K A N + + Y L + A + ++ S+ G F + Sbjct: 238 AHADLMIKSAQNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFHLVSQQGSFA 292 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 463 >gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae NTUH-K2044] gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 495 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 164/472 (34%), Positives = 241/472 (51%), Gaps = 35/472 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D Sbjct: 19 ERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + LS L QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + ++ A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQ 311 + +A + + G++ LK ++ TI S GK + L G F Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I + G ++ G R EA+ A+ + DV++VAGKGHE IV N Sbjct: 428 I---LAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia tasmaniensis Et1/99] Length = 495 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 161/486 (33%), Positives = 240/486 (49%), Gaps = 30/486 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVAI G+ DG FIPQAIAQG A++ + +D Sbjct: 19 ERALREMTLDSRVAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y + P L + G +G + + Q + Q + L Sbjct: 79 THGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAMEISSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y AK LF E + AII ADD + ++ Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDKVGRRWLE 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV +V S + D L G F V N Sbjct: 252 KLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ A + +L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLDYPLAALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALT 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP I ++I+ Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCADVVVITDDNPRSEDPAAIVSDILS 430 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G R +A+ + + D+++VAGKGHE I+ + S D D Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486 Query: 489 IREILG 494 + +LG Sbjct: 487 VARLLG 492 >gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. B100] gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris str. 8004] gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas campestris pv. campestris] Length = 495 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 156/457 (34%), Positives = 223/457 (48%), Gaps = 23/457 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ +++ + DSR ++ G FVAI G G F QA+A GA AI+ F Sbjct: 18 RDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAIL---------FEPP 68 Query: 86 IRSNTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139 ++ P+ + V R L + A +G + ++ VTGT+GK+S + Q Sbjct: 69 APADLPVPADAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQLLAQALTL 128 Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + IG + A TTP + L+ L G V++E SSH LDQ R Sbjct: 129 LGTPTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +D ++ FTNL RDH+DYH Y AK +LF + A++ DDA+ + + Sbjct: 189 VDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRA--AVVNLDDAFGRTLFA 246 Query: 259 RAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 A V S G + + + H+ Q T+ + PL G F V N L Sbjct: 247 ALDPALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLL 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AG A+ I A + E L +L + GR +G + VDYAHT ++LE L ++ Sbjct: 307 AVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALTSL 366 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R+ R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 367 RSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVADILRGF 426 Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M D++++AGKGHE Sbjct: 427 ARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHE 463 >gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase [Alistipes shahii WAL 8301] Length = 484 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 156/453 (34%), Positives = 239/453 (52%), Gaps = 32/453 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G F A+ G + DGH +IP A+ +GA AIV + A ++V Sbjct: 30 DSRAVKPGDCFFAVPGTQSDGHDYIPIAVEKGAAAIVC------ERMPADAAEGVAYVLV 83 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ ++ A+ Y +P ++ +TGT+GK++ A+ + + + G ++ G ST Sbjct: 84 GDSAGAMADMAAAFY-DYPSRELKLVGITGTNGKTTTATLLYDLVRAMG---YKAGLIST 139 Query: 153 ISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + D R TTP I L + ++ G + +E SSH + Q R G+ G Sbjct: 140 VV-YKIDGREVEATHTTPDSIRLNAMMREMADAGCAYCFMECSSHAIVQERTRGLDFAGG 198 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 F+N+ DH+DYH+T Y AK +LF + LPK + A+ ADD + VM + A Sbjct: 199 IFSNITHDHLDYHKTFAEYIRAK-KLFFDGLPKGAFALTNADDRNGR-VMVQNTAAAVSA 256 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ F K+ +H + + ++G++ L G F YN L G +G+ Sbjct: 257 YSLRAMADF--RCKIVEMH-LDGMLLRIDGQEL--WVGLLGRFNAYNLLAVYGAAALLGL 311 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR-II 385 + VL L LH V GRFE + + G VDYAHT ++LE +++ I I T G+ +I Sbjct: 312 NRGEVLRVLSMLHAVSGRFEKI-RAANGTTAIVDYAHTPDALENVIQTIEEIRTPGQQLI 370 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PG--FIEK 442 VV GCGGDRD+ KRP M IA+ A A+ T DNPR E PE I +++ G+ PG ++ Sbjct: 371 VVCGCGGDRDRTKRPEMAAIAVKYATTAVFTSDNPRHESPEAILDDMVAGLEPGARYLRI 430 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIRTA+ + D+++VAGKGHET IV Sbjct: 431 ADRAEAIRTAVMLSRPGDIILVAGKGHETYQIV 463 >gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinomonas mediterranea MMB-1] Length = 496 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 233/473 (49%), Gaps = 63/473 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V +DSR + + +FVA+ G +G ++ +G VV + Y + A+ ++ Sbjct: 26 QVKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPT-YVAKGLIASNSTDLN 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-----SFQ 146 I+ D+ LS + G P +++ VTGT+GKSSV+ ++ Q+ GLS +F Sbjct: 85 IIGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFG 144 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +G + + S Q TTP + + K L+ + GV V+ EASSH LDQ R+ GI++ Sbjct: 145 VGKLNNLESAKQ----TTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGIEIDT 200 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-------ELLPKESPAIIYADDAY------- 252 FTNL +DH+DYH T ++Y AK +LF K A+D+ Sbjct: 201 AVFTNLTQDHLDYHGTMESYATAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSKGDKSYYG 260 Query: 253 ---SKEVMKRA---HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 S + + R H+ GC L + G + SVE PL Sbjct: 261 ERPSDDFVIRDVTYHSLGCSFLLLTKSGHY-----------------SVE-------LPL 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363 GEF V NA+ A + D ++ L L PGR E V T S G + VDYA Sbjct: 297 MGEFNVDNAVAALASLWPLFDDKVALISSLTSLKGAPGRMERV-TLSEGANVPVVLVDYA 355 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L + LK + + G I VFGCGGDRD+GKRP M + ALDLAD ++T DNPRSE Sbjct: 356 HTPDALSVALKALAVHSKGPITCVFGCGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSE 415 Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +I + + G+ I +R AI AI + ++++VAGKGHET Sbjct: 416 IPSEIMQDALSGVAECERQRVILDEDRRSAIEFAIATASINEIVLVAGKGHET 468 >gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lyngbya majuscula 3L] Length = 506 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 164/498 (32%), Positives = 245/498 (49%), Gaps = 22/498 (4%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ K + N + I + + + + ++S Q G +F+ + G + DG F Sbjct: 1 MKLRELLAK----IANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118 AIA GA A ++S + + + T + V+ D+ + A+ Y +P L Sbjct: 57 ESAIASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFY-DYPAQKL 115 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYLA 171 + G +G + + I SS I PT+ + + F Q TTP + L Sbjct: 116 RLIGVTGTNGKTTTTHLIEFLLAHSSSPI-PTALLGTLYARWPGFEQTASYTTPFAVQLQ 174 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + L G +E SSH L Q R+ G FTNL +DH+DYHQ YF+AK Sbjct: 175 QQLQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKA 234 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +LF K AII ADD+Y + ++++ S+ K + + Sbjct: 235 KLFSSDYLKGR-AIINADDSYGERLIQQLPTEQVWSYSIQNPSADFWTKDLSYEPTGVRG 293 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + F PL G++ + N L A G + +G+D LV L + VPGR E V Sbjct: 294 IMHTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQI 353 Query: 352 NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT +SLE +L+ R G++I VFGCGGDRD+ KRP MGKIA LA Sbjct: 354 QPEQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKRPKMGKIAAQLA 413 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGK 467 D+A+VT DNPR+E+PE I +++ GIP +E +R AIRTAI D +++AGK Sbjct: 414 DVAVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLIAGK 473 Query: 468 GHETVHIVTNGEKKMSVD 485 GHE I+ G +K+ D Sbjct: 474 GHEDYQIL--GTEKIHFD 489 >gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212] Length = 508 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 159/486 (32%), Positives = 240/486 (49%), Gaps = 31/486 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR I+ G F+A G+ DG+ FIPQAIA GA A++ Y ++F Sbjct: 22 EIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVL----YDPRNFVWKSEW 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L VD+ + L AS +Y HP ++ +TGT+GK+S + + Q G + Sbjct: 78 RIPALAVDDLKMKAGLIASYVY-DHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTA 136 Query: 146 QIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G S Q TTP L ++ +G +V +E SSHGL Q R G Sbjct: 137 VLGTLGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TNL RDH+DYHQ AY AK LF P A++ DD E+ ++ Sbjct: 197 SVALLTNLSRDHLDYHQDMDAYAAAKSSLF--FWPGLKYAVVNMDDVLGVELSRQLVTKP 254 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315 +++ G++ K + + + + G +FD F L G+F N Sbjct: 255 IKMMGYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNL 314 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILK 374 L +A GI + L+ + +PGR E + G N I VDYAHT ++LE +L Sbjct: 315 LAVVAALLASGIRLPDAVGSLQSVQSIPGRMEKYYGINQ--STIIVDYAHTPDALEKVLC 372 Query: 375 NIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +R + + R+ V GCGGDRD+GKR ++G++A LAD I T DNPRSEDP +I Sbjct: 373 TLRELLRIEGRNARLFCVVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRII 432 Query: 430 AEIIHG-IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I G + G + + +R AI AI D++++AGKGHE + G+K D + Sbjct: 433 EDIAAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKGHEKFQEI-KGQKISFSDAE 491 Query: 488 IIREIL 493 +++++L Sbjct: 492 VVQQVL 497 >gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Laribacter hongkongensis HLHK9] gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9] Length = 491 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 157/458 (34%), Positives = 230/458 (50%), Gaps = 34/458 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V+SDSR + G +F+A G DG +I AI++GA A+ A F Sbjct: 22 RPDRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPA---DGFEWQPGW 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + R + AS L G+ E ++ VTGT+GK+S+ +++ Q G + Sbjct: 79 TVPNLPVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAAL 138 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG D TTP P+ + + L+ QG V++E SSHGLDQ R++G+ Sbjct: 139 IGTVGNGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFG 198 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH + AY K RLF + A+I DD + +E+ R AG Sbjct: 199 TAVFTNLTRDHLDYHGSMAAYGATKERLFHWQGLQH--AVINVDDQFGRELASRC-TAG- 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYNAL 316 +V++ G + + + A+H S+EG + P G F N L Sbjct: 255 QVITYGLEHGDV---RPMAVH------ASLEGLAMELATPWGHGRIESAFLGRFNASNLL 305 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + G+ L ++ GR + VG +R + +DYAHT ++LE L + Sbjct: 306 ACLAVLCVNGVPLTQACRVLGQIQPARGRMQRVG-GTREPLVVIDYAHTPDALEKALSTL 364 Query: 377 RTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I GR+ VFGCGGDRD+GKRP+MG IA AD+ +VT DNPR+E P+ I +I+ Sbjct: 365 ADIKPAGGRLFAVFGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILA 424 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ P +E +R AI A+ DV++VAGKGHE Sbjct: 425 GMRQPTQVEP-DRRAAIHWAVAQARVGDVVLVAGKGHE 461 >gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas sp. SN2] Length = 530 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 167/505 (33%), Positives = 246/505 (48%), Gaps = 57/505 (11%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + +I ++ DSR + FVA+ G++ DG FIPQAI+ GA I+ + Sbjct: 14 LAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDD 73 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135 S +R ++ I+ + LS A+ Y ++ AVTGT+GK+S + Q Sbjct: 74 SQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQ 133 Query: 136 ICQRSGLSSFQIGP----------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 + G S +G T +++ A + TTP+ I L L+ V H Sbjct: 134 LKDALGTRSASVGTLGSSVYEGENTQWVTTAAAN---TTPNAIRLQYVLAEFVQCEVRHT 190 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LL 238 + EASSH L Q RL +K FTNL RDH+DYH T + Y AK L ++ L Sbjct: 191 AFEASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLN 250 Query: 239 PKESPAIIYAD--------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +S + +AD D S+E+ + RV V + G F V A H + Q Sbjct: 251 VNDSESQNWADYLDANAAKDGSSEEIAI----SKPRVTRV-WTG-FEPTDDVLATHKQPQ 304 Query: 291 --------VTISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 V+ G FD + L G F V N L A +A G V+ Sbjct: 305 DRHCFATNVSYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVV 364 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + L VPGR E + VDYAHT ++LE +LK+ +T T+G++ VFGCGGD Sbjct: 365 RVVNGLQPVPGRMEVFPVGGSAS-VIVDYAHTPDALEQVLKSAKTHTAGKVWCVFGCGGD 423 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIR 450 RD+GKRP+MG A AD+ ++T DN RSE PE I ++I G+ +E+ +R AIR Sbjct: 424 RDKGKRPLMGAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRESAIR 483 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIV 475 ++ ++ D+++VAGKGHE I+ Sbjct: 484 YCLDSADENDIIIVAGKGHEDYQII 508 >gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 495 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 170/470 (36%), Positives = 241/470 (51%), Gaps = 37/470 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQ 311 ++V +G H+ C H + +VE G F L G F Sbjct: 254 PDAVAVSMEG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+G +L+ +L V GR E V T + VDYAHT ++LE Sbjct: 309 VSNLLLALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I + Sbjct: 368 ALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIIND 427 Query: 432 IIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I + G ++ G R EA+ I DV+++AGKGHE IV Sbjct: 428 I---LAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIV 474 >gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Dialister invisus DSM 15470] Length = 499 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 246/494 (49%), Gaps = 43/494 (8%) Query: 13 ELINQLSIFPMQWRER----KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +LI+ L P++ E +I +V++DSR ++ G +F + G DGH F A GA Sbjct: 3 QLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAENGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGK 126 AI+ + S+ I+ V +TRK + Y ++A+TGT+GK Sbjct: 63 AAIIAEKKID-------VASDVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGK 115 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 ++ + I G ++ G T+ + D + TTP I L + L + + V Sbjct: 116 TTTTHVISHILHHVG---YKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENV 172 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE- 241 THV +E SSH L R+ G + FTNL DH+DYH+T Y AK LF+ + K+ Sbjct: 173 THVCMEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQ 232 Query: 242 ----SPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIH---NKQQVT 292 A I +DD Y+ VM A + C+V + G+ G K +H Sbjct: 233 IKDGKSAWINSDDPYAA-VMSNAISDPDFCQVSTYGFNGN--PDLKASDVHFSGKSSSFK 289 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + K + L G F VYN + A G ++ G+D + L V GRFE + Sbjct: 290 IQLGEKRYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELI-EE 348 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + + VDYAHT + LE IL + I GR+I FGCGGDRD+ KRPIMG+IA + +D+ Sbjct: 349 GQSFSVVVDYAHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANYSDV 408 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGN--------RIEAIRTAIEMLNKQDVLV 463 ++T DNPR+EDPE+I EI G+ + K N R AI+ A+ + + QD+++ Sbjct: 409 VVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQDIVL 468 Query: 464 VAGKGHETVHIVTN 477 +AGKGHE I+ + Sbjct: 469 IAGKGHEDYQILKD 482 >gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock3-17] Length = 491 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 244/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR + G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + Q V +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH L R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ + L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD----GGQDYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A AI+T DNP Sbjct: 350 DYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I +++ G G + +R EAI + +D++++AGKGHET I+ Sbjct: 410 RSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKGHETYQII 466 >gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus mycoides Rock1-4] gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus pseudomycoides DSM 12442] Length = 491 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 244/477 (51%), Gaps = 31/477 (6%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR + G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V NT + L++ A YG+ H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + +I + G + IG + I + + TTP + L + + Q V +E Sbjct: 117 HIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVMEV 176 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPA 244 SSH L R+ G FTNL +DH+DYH+T + Y +AK LF +L +E A Sbjct: 177 SSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKYA 236 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL 303 ++ +DD ++E M+ + V++ G I K + T+ + + Sbjct: 237 VLNSDDPVTEEYMR---STAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 L G+F VYN L A + G+ ++ + L VPGRFE V GG+ Y V Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVVD----GGQDYTVIV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A AI+T DNP Sbjct: 350 DYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 RSEDP+ I +++ G G + +R EAI + +D++++AGKGHET I+ Sbjct: 410 RSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKGHETYQII 466 >gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Porphyromonas uenonis 60-3] Length = 499 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 160/490 (32%), Positives = 242/490 (49%), Gaps = 52/490 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + DSR G IFVA+ G DG +IP+A+A G IV ++ Sbjct: 33 QVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTE-----HPRPESLSD 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L V +T K +++ AS Y + PE I+ VTGT+GK++ A+ Q+ G+ + Sbjct: 88 EVAWLTVTDTAKAIAVLASVYYDR-PERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAA 146 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+ D TTP + L + + + G ++ +E SSH L Q R+ G Sbjct: 147 LF---STVCIRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYG 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH T QAY AK LF+ L P ++ A++ ADD Sbjct: 204 LPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDNLSP-DAYALVNADD----------- 251 Query: 262 NAGCRVLSVGYQGKFIHLKKVC----AIHNKQQVTISVEGKDF-----DFLFPLPGEFQV 312 R SV Q HL A + Q + V+G + L G + Sbjct: 252 ----RNGSVMVQNCAAHLHTYAMRSHADYMSQLLGQYVDGSTLLLDNEEVEIKLVGSYNA 307 Query: 313 YNALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 YN G+ + +D +L+L + L V GRF+ + + RG + VDYAHT ++LE Sbjct: 308 YNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLAS-PRGYHVVVDYAHTPDALE 366 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +LK + + + ++ VV G GGDRD GKRP MG+IA ++ + +T DNPRSEDP+ I Sbjct: 367 NLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSEDPQTIID 426 Query: 431 EIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +++ GIP +E+ +R +AI A + D++V+AGKGHET + G K Sbjct: 427 QMLEGIPQ-VERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEI-KGIKHHFD 484 Query: 485 DCDIIREILG 494 D ++ +EI Sbjct: 485 DKEVAQEIFA 494 >gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Paenibacillus polymyxa E681] Length = 495 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 237/465 (50%), Gaps = 39/465 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR +Q G +F+ + G DGH + QAIA GA A+VV + P Sbjct: 26 IGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAAALVVERELDVP---------VPQ 76 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LVV + R +++ A ++ + + +TGT+GK+++ +++I + +G+++ IG T Sbjct: 77 LVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITYLIEKIMKDAGVNTGLIG-T 135 Query: 151 STISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + Q + TTP + L + L ++ QGV +E SSH L+Q R+ G Sbjct: 136 IQMRYGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEVSSHALEQGRVKGTDFRTAI 195 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH T + Y AK LF L A++ ADD S + + Sbjct: 196 FTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDSKYAVLNADDPASSYLQAQT- 254 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +V++ G + + + + +S D D + G+F VYNAL A Sbjct: 255 --AAQVITYGVEKESDVQASSITIGSKGTSFHVSTFKGDTDIELRMVGKFNVYNALAAIT 312 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + GI + LE + V GR E V + VDYAHT + LE +L+ ++ Sbjct: 313 AALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFA-VIVDYAHTPDGLENVLRTVKEFA 371 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 G++ VFGCGGDRD+ KRP+MGKIA +D + +T DNPR+EDP+ I +I G+ I Sbjct: 372 VGKVWCVFGCGGDRDRTKRPLMGKIAARYSDHSFITSDNPRTEDPKVILKDIEQGL---I 428 Query: 441 EKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++G +R AI A+EM + DV+++AGKGHET ++ Sbjct: 429 DEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAGKGHETYQLI 473 >gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus chthonoplastes PCC 7420] Length = 501 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 165/503 (32%), Positives = 245/503 (48%), Gaps = 34/503 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + P ++ ++ P + +I + ++S Q G +F+ + G + DG F Sbjct: 1 MKLHDLL-RAIPNVV-EMPNHPA--LDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFW 56 Query: 61 PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 AIA GA A ++S A + P ++ A+ + +P L Sbjct: 57 QSAIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQ 116 Query: 120 VTGTSGKSS------VASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPS 166 + G +G + + F+ QR PT+ + F+Q TTP Sbjct: 117 LVGVTGTNGKTTTTHLIEFILTQAQR---------PTALFGTLYARWQGFSQTAVHTTPF 167 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 P+ L + L + G +E SSH L Q R+ G + FTNL +DH+D+H+ + Y Sbjct: 168 PVELQQQLHSAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDY 227 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 F AK LF AII ADD Y K ++++ SV ++ + Sbjct: 228 FAAKALLFNSDY-LHGKAIINADDPYGKRLIEKVGRDRTWSYSVQNPSADLYTSNLTYTL 286 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T+ D F PL G++ + N L A G + +G+D V+ L + VPGR Sbjct: 287 IGVKGTLHTPVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRM 346 Query: 347 EFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKI Sbjct: 347 ERVQLKPDQDISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKRPKMGKI 406 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVL 462 +LAD+A+VT DNPR+EDPE+I +I+ GIP +E +R AIRTAI D + Sbjct: 407 GAELADVAVVTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGV 466 Query: 463 VVAGKGHETVHIVTNGEKKMSVD 485 ++AGKGHE I+ G +K+ D Sbjct: 467 LIAGKGHEDYQIL--GTEKIHFD 487 >gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M0579] gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240149] gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis NZ-05/33] Length = 492 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC 35316] gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter cancerogenus ATCC 35316] Length = 471 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 160/462 (34%), Positives = 237/462 (51%), Gaps = 33/462 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +FVA+VG++ DG +IPQAIAQG A++ + D P++ + Sbjct: 4 DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P + L + G +G + + Q + Q + L +G T + Sbjct: 64 SQLNERLSALAGRFY-HEPSDQLRLVGVTGTNGKTTTTQLMAQWAQL----LGETGAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L+ QG + ++E SSHGL QHR+ +K A Sbjct: 119 TVGNGLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ E AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHHGE--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGL 321 + + G++ LK V ++ + TI V + + L G F V N L+A Sbjct: 237 MEDHINPNCHGRW--LKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALAT 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A+G A +L+ E+L V GR E + + VDYAHT ++LE L+ R + Sbjct: 295 LLALGYPMAELLKTAERLQPVCGRMEVFSAPGKP-TVVVDYAHTPDALEKALEAARLHCA 353 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 G++ VFGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I + G ++ Sbjct: 354 GKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI---LAGMLD 410 Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G R EA+ AI + DV+++AGKGHE IV N Sbjct: 411 AGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGN 452 >gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 506 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 250/476 (52%), Gaps = 26/476 (5%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S + +WRE + ++ DSR I+ +FVA+ G+ DG FIP AI GA A V++ A S Sbjct: 21 SDWQEKWREHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATA-VLAEADS 79 Query: 79 LQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 + + + + +++ ++LS A+R Y + P+ +LAVTGT+GK++++ + Sbjct: 80 IANHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQ-PDTRLKLLAVTGTNGKTTISQLLA 138 Query: 135 QICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G ++ +G T ++S TT + I + L L QG ++E SSH Sbjct: 139 QWANLIGYNAGVMGTTGNGLLNSLIPAVN-TTGNAIEIPHVLHDLVEQGADFAAMEISSH 197 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL Q R+ ++ +A FTNL RDH+DYH Y +AK LF E + +I ADD Sbjct: 198 GLVQGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDI 255 Query: 253 SKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFP 305 + NA V L GYQG+ + L V ++ Q V IS + F P Sbjct: 256 GLSWLADLPNAVAVVTDKARLGEGYQGQALWLTDVA--YSTQGVNISFDSSWGAGQFTAP 313 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F V N L+A +A+G ++ +L V GR E V S + VDYAHT Sbjct: 314 LVGSFNVSNLLLALATLLALGHSIDKLIAAAPRLTAVIGRME-VFQRSDKPMVVVDYAHT 372 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE L+ +R G++ +FGCGGDRD GKRP+M +I+ LAD I+TDDNPR+E P Sbjct: 373 PDALEKALQALRVHCQGKLWCIFGCGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAP 432 Query: 426 EKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I ++++ G+ ++ +R A AIE D++++AGKGHE ++ + Sbjct: 433 AGIVSDMLQGLT-LPQQAQVIHDRKLACTYAIEHARANDIILLAGKGHEDYQVLAD 487 >gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 503 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 163/480 (33%), Positives = 242/480 (50%), Gaps = 38/480 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + +DSR I+ G +FV + G DGH + QAI GA AIV S + N Sbjct: 23 ITNLETDSREIRPGGVFVCVPGFHVDGHDYAEQAIRNGAVAIVAERELS------GLPGN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V +TR+ L + A+ +G + + +TGT+GK++ V QI + + I Sbjct: 77 VTHITVPDTRRILPILANAFFGDPTRQLKLIGITGTNGKTTTTHMVDQILNDARRKTGII 136 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + + TTP I L + + S G + +E SSHGLD R+ G Sbjct: 137 GTLYMKIGNHVEKTLNTTPDTIQLMRYFHTIISHGGEYGVLEVSSHGLDMGRVRGCDFQT 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRAHN 262 FTNL DH+D+HQT ++Y N K LF +L + A++ ADDA S KR Sbjct: 197 VVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNRDMQKKAVLNADDAASSYYAKRT-- 254 Query: 263 AGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ G Q + H ++ C H + S D + G +YNA Sbjct: 255 -SAQIITYGIQNQADVRATQIHHSREGCVFHAETPWGSS------DVNLKVHGAHNIYNA 307 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A C+ GI + LE+ V GRF+ + T R G + VDYAH + L+ L++ Sbjct: 308 LAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGRRFG-VVVDYAHNPDGLKATLQS 366 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + ITSG++I V GC G+RD+ KRPIM IA +D + T DNP SEDPE+I AE++ G Sbjct: 367 AKAITSGKMICVMGCRGERDRSKRPIMADIAASYSDYVLFTADNPFSEDPEQIMAEMLGG 426 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + E GN R EAI+ A+EM +D +++ G+GHET ++ + + S D DI+ Sbjct: 427 LTSR-ESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRGHETRYVAGSRIESFS-DEDIV 484 >gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acidobacterium capsulatum ATCC 51196] Length = 502 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 162/494 (32%), Positives = 259/494 (52%), Gaps = 49/494 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V DSR + G +FVA+ G DG+ +I AI +GA AI+ SA ++ +S +R+ Sbjct: 21 ELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGAILTDSAEAMATWS--LRT 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 + I V + R+ ++L A+ +G HPE LAV+G +G + + ++ + Q + + Sbjct: 79 DVAIAQVPHGRQAMALVAANFFG-HPERQLAVSGVTGTNGKTTTTFLLESLLQHAQRKTA 137 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV----THVSVEASSHGLDQHRLDG 201 +G TI L +P ++ L L QGV T +E SSH L Q R+ G Sbjct: 138 LVG---TIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAVMEVSSHALAQGRVYG 194 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMK 258 I FTNL RDH+D+H + Q YF AK LF+ L P+ S ++ +D + E+ Sbjct: 195 IPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVS--VLNLEDPHGAELAL 252 Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308 A G + S G+ G+F + V +S G F + P L G Sbjct: 253 TAREHGSEIYSYGFNTGEF----------RAEDVQLSGGGMRFHWHTPFGHAPVTTRLIG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 VYN L A+ +A G+ V+E + LH VPGRF+ + + + VDYAHT ++ Sbjct: 303 RVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGRFQTI-DEGQPFTVVVDYAHTDDA 361 Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 L ++ R + GR+I +FGCGGDRD+ KRP+MG+ A + +D+ ++T DNPRSEDP Sbjct: 362 LRNLIALARDLVHKHKGRVITLFGCGGDRDRTKRPLMGQAAAEGSDVVVLTSDNPRSEDP 421 Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE-- 479 E I A+++ G+ ++ + +R IR A+E+ D++++AGKGHE + +G Sbjct: 422 EAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKGHEKTQTLRHGTIP 481 Query: 480 -KKMSVDCDIIREI 492 ++V ++RE+ Sbjct: 482 FDDVAVAAAVLREM 495 >gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 515 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 165/496 (33%), Positives = 244/496 (49%), Gaps = 39/496 (7%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + +I ++ DSR + F+AI G++ DG FIPQAI+ GA I+ + Sbjct: 14 LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDD 73 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 S +R ++ I+ + + LS A+ Y + + +AVTGT+GK+S + Q Sbjct: 74 SEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSV 187 + G S IG + S F D TTP I + L+ V H + Sbjct: 134 LKDALGTRSASIGTLGS-SVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAF 192 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSH L Q RL +K FTNL RDH+DYH T + Y AK L + P ++ Sbjct: 193 EASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQ--PGLKAVVLN 250 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--------VTISVEGKD 299 A+D S + A NA R+ + + L + HN Q + G Sbjct: 251 ANDDESNKWDNVADNAITRIWTGIDESADGALFRA---HNNPQSRHCFATNASYHSGGCS 307 Query: 300 FDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 F+ + PL G+F + N L A G +A G V++ + + VPGR E Sbjct: 308 FELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFP 367 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + VDYAHT ++LE +L + + T+G++ VFGCGGDRD GKRP+MG+ A A Sbjct: 368 VPG-AANLVVDYAHTPDALEKVLLSAKFHTAGKVWCVFGCGGDRDTGKRPLMGQAAEAGA 426 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 D ++T DN RSEDPE I +II G+ + +R +AIR + +K D+++VAGK Sbjct: 427 DAIVITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSDIIIVAGK 486 Query: 468 GHETVHIVTNGEKKMS 483 GHE I+ G+KK + Sbjct: 487 GHEDYQII--GDKKTN 500 >gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus moniliformis DSM 12112] Length = 476 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 249/475 (52%), Gaps = 46/475 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++S +S+ I+ G IFVA++GN DGH +IP AI GA+ I+ D+ Sbjct: 20 EDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENGAKMIIAER----DDYPYP- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + +++V N R L +S Y P+N I+AVTGT+GK++ ++ I + S Sbjct: 75 -KDITVVLVKNLRDNLGYISSNFYN-FPQNKLKIIAVTGTNGKTTTTYILESIFKNSA-- 130 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +IG T I + + TTP + L K + + V + +E SSH L Q R+ + Sbjct: 131 --RIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEVSSHALCQGRVKML 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + + FTNL +DH+D+H+T + YF AK + L P + II DD Y Sbjct: 189 EFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPN-ARLIINKDDKYCN-------- 239 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNK--------QQVTISVEGKDFDFLFPLPGEFQVYN 314 R+L+V LK+V I+ + +V IS + K + F L GE+ + N Sbjct: 240 ---RLLNVS---DSFSLKEVATINGEVLEYTLKGMKVRISKDDKKYIFTTKLMGEYNLQN 293 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A +GID ++ ++ ++ + GRFE + N + + VDYAHT++ LE ILK Sbjct: 294 LLGAILSAYNLGIDLDEIINSIQNINSIAGRFEIID-NDKDVMVVVDYAHTADGLENILK 352 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + + R++ +FG GGDRD+ KR M + A +D+ +T DNPR+EDPE I ++ Sbjct: 353 TLSIMKKNRLVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNPRTEDPEMILNDVEK 412 Query: 435 G----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G IP F + +R AI+ +I+ L K D+L++AGKGHE I+ G +K+ D Sbjct: 413 GMNSSIPYF-KICDREMAIKNSIQTLQKNDILLIAGKGHEDYQII--GREKIHFD 464 >gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nodularia spumigena CCY9414] Length = 496 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 235/466 (50%), Gaps = 13/466 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I + ++S G +F+ + G + DG F AIA GA A +VS A +LQ T Sbjct: 20 DAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASGALAAIVSPA-ALQKNPPT- 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 +L + + + A+ YG + + V T + ++ + ++ LS+ Sbjct: 78 -GEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNGKTTTTHLIEFLLTKANLST 136 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T F Q TTP + L + L+ + G ++E SSH L Q R+ G + Sbjct: 137 ALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEAVNAGCEFGAMEVSSHALAQGRVLGCE 196 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 F+NL +DH+DYH + YF AK LF K AII ADD Y + ++ + Sbjct: 197 FEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGR-AIINADDDYGQRLIASLSSE 255 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 SV + + + N + + F PL G++ + N L A G + Sbjct: 256 RVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPKGNVAFRSPLVGQYNLENLLAAVGAVL 315 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSG 382 +G+D LV + + VPGR E V N + VDYAHT +SLE +LK R G Sbjct: 316 HLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEISVIVDYAHTPDSLENLLKAARPFIPG 375 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++I VFGCGGDRD+ KRP MGKIA +LAD+A++T DNPR+EDPE+I +++ GIP ++ Sbjct: 376 KMICVFGCGGDRDRTKRPKMGKIAAELADVAVLTSDNPRTEDPERILQDVLAGIPDTVKP 435 Query: 443 G---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R AIRTAI D +++AGKGHE I+ G +K+ D Sbjct: 436 TVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQIL--GTEKIHFD 479 >gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M04-240196] Length = 492 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrospira platensis str. Paraca] Length = 498 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 169/498 (33%), Positives = 250/498 (50%), Gaps = 27/498 (5%) Query: 1 MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL+DL+ + PE L + +I ++++S + G +F+ + G + DG Sbjct: 1 MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117 F P AIA GA A +VS + + T P ++ + K + A+ Y HP Sbjct: 53 FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFY-NHPAQT 111 Query: 118 LAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 L + G +G + + ++ + + +G T F + TTP + L Sbjct: 112 LKLVGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQ 171 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ G +E SSH L Q R+ G FTNL +DH+DYH T YF AK L Sbjct: 172 LADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALL 231 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--QV 291 F + + AII ADD Y K++M R G RV S + ++ Q Sbjct: 232 FSDDY-LQGKAIINADDDYGKKLMARL--GGDRVWSYSVSDPSTDIWADSLVYQPTGIQG 288 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + F PL G++ + N L A G +A+G+D + +++ L VPGR E V Sbjct: 289 VLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKI 348 Query: 352 NSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DL+ Sbjct: 349 SPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLS 408 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGK 467 D+A+VT DNPR+EDP++I +++ GIP ++ G+R +AIRTAI D +++AGK Sbjct: 409 DLAVVTSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGK 468 Query: 468 GHETVHIVTNGEKKMSVD 485 GHE I+ G +K+ D Sbjct: 469 GHEDYQIL--GTEKVHFD 484 >gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli 95/1000] Length = 507 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 155/480 (32%), Positives = 244/480 (50%), Gaps = 14/480 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATI 86 +I ++ +S+ ++ +IFVAI G K+DGH +I AI A I+ +S+ S + Sbjct: 27 EIKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADKSFINSLKEK 86 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 N + N R+ L+ +++LY + + + +A+TGT+GK++ + ++ + + Sbjct: 87 YKNVCFVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKAALESAKNKI 146 Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + ++ LTTP + L + V+H+ +EASS L R D I Sbjct: 147 ALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYKKNVSHIVMEASSQALAMDRCDYIN 206 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRA 260 A FTNL DH+DYH + Y AK++LF L AII Y KE+ Sbjct: 207 YDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTDYFKEIKNYI 266 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFL-FPLPGEFQVYNALVA 318 ++++ G K + K+ +++K + +GK + L GEF V N+L Sbjct: 267 KKLDLKMVTYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGEFNVVNSLSV 326 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +D V++ + K+ V GRFE V + VDY+HT +SLE IL R Sbjct: 327 LAYAYEYKLDIEKVIKAIRKVQV-SGRFEIVSGEKCPFIVAVDYSHTPDSLENILVESRK 385 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 + R+IVVFGCGGDRD+ KRPIM IA ADI+I+T DN R+E E+I ++I +G Sbjct: 386 LKPNRVIVVFGCGGDRDRKKRPIMASIAEKYADISILTTDNQRTESIEQIMSDIENGFTH 445 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + + +R EAI AI+ + D++++AGKGHET I + D ++ RE L I Sbjct: 446 SNYKKIIDRKEAIFEAIKEAKENDIVIIAGKGHETYQIFPDKTIHFD-DTEVAREALSNI 504 >gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH 391-98] Length = 491 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 249/479 (51%), Gaps = 35/479 (7%) Query: 14 LINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ L FP+ +E +I + +DSR + G +FV + G D H F QA AQGA AIV Sbjct: 6 LVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQAAAQGAAAIV 65 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVA 130 I + P+++V +T + L++ A Y + H +++ +TGT+GK++ + Sbjct: 66 AERP---------IDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTTS 116 Query: 131 SFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + +I + G + IG + +FA N TTP + L +A + + V + Sbjct: 117 HIIDEIMRAHGHKTGLIGTINMKIGDETFAVKN--TTPDALTLQQAFHRMVEENVNSAVM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKES 242 E SSH LD+ R+ G FTNL +DH+DYH+T + Y +AK LF +L +E Sbjct: 175 EVSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREK 234 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301 A++ DDA ++ ++ + V++ G + K + T+ + Sbjct: 235 YAVLNNDDAATEAYIR---STAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLVTPHESKK 291 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-- 359 L G+F VYNAL A + G+ +++ LE L V GRFE V GG+ Y Sbjct: 292 ITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVVD----GGQDYTV 347 Query: 360 -VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT +SLE +L + G + + GCGGDRD+ KRPIM +A + A AI+T D Sbjct: 348 IVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAILTSD 407 Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP+ I +++ G+ G + +R +AI AI +DV+++AGKGHET I+ Sbjct: 408 NPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKGHETYQII 466 >gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Marinomonas sp. MED121] gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Marinomonas sp. MED121] Length = 499 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 246/479 (51%), Gaps = 32/479 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR++ +F A+ G +G ++ AQG +VV L + + + Sbjct: 33 LATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCRVVVVPEVVKLDE-----TLDLAV 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-----FQI 147 + V +T ++ F ++ +P +I AVTGT+GKSS++ + QI + LSS F + Sbjct: 88 IRVPDTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVGTFGV 147 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G + Q TTP + + +SQGV H++ EASSH LDQ R++G+ + Sbjct: 148 GLLDDLKPSEQ----TTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRIEGLPIETA 203 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 ++NL RDH+DYH + AY AK +LF P+ A+I DD YS ++M A A C V Sbjct: 204 IYSNLSRDHLDYHGSMAAYAEAKAKLFR--FPQLKRAVICIDDEYS-DIMLDA--AACPV 258 Query: 268 LSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S Q + + + ++ + + V GK + PL GEF V NA+ A Sbjct: 259 YSYSLQHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQ 318 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 D A ++ L L PGR + V S + +DYAHT +++E+ LK +R GR+ Sbjct: 319 VEDKAQLISALSLLSGAPGRMQMVNLQS-APLVVIDYAHTPSAIEVALKALRLHNKGRLT 377 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEK 442 ++GCGGDRD+GKRP+M + AL +DIA +T DNPR+E +I + ++ +E+ Sbjct: 378 CIYGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESVAQILDDALIMLENKDALVEQ 437 Query: 443 G------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 G +R AI I DV+++AGKGHE + +G K D ++ E L L Sbjct: 438 GSLHILPDRRAAIFDVIAKAQSDDVILIAGKGHENYQDI-DGVKHHFDDAEVALEALTL 495 >gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria subflava NJ9703] Length = 492 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 167/503 (33%), Positives = 240/503 (47%), Gaps = 29/503 (5%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AIA GA + F+ N P + + + + A+++YG ++ + Sbjct: 55 AAIANGATFVFWDDD---GKFTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDSLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGTLEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQVTIS 294 AII DD Y E+ R C L+V GY + I + A + + Sbjct: 230 HGLQHAIINVDDEYGAELAGRLKK-DCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQ 288 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + L G F N L A G VLE L K+ GR + + NS Sbjct: 289 TPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMDCI-MNSG 347 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L ++ I + VFGCGG+RD GKRP+MG A+ AD Sbjct: 348 KPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADK 407 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DNPR E+P+ I +I+ + P +E +R AIR A+E D++++AGKGHE Sbjct: 408 VVVTSDNPRLENPQDIINDILPAVSNPERVEV-DRAVAIRYAVEQAAANDIILIAGKGHE 466 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V G K D +I + L Sbjct: 467 NYQDV-QGVKHHFSDFEIAEKAL 488 >gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 410 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/400 (36%), Positives = 224/400 (56%), Gaps = 24/400 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86 +I V+ + + I+ G++FV + E ++I Q ++ GA+AI+ S + + S I Sbjct: 18 EIKGVTCNPKKIKEGYLFVCV---SERDRIYIDQILSCGAKAIIASDCIT-EALSLGIIP 73 Query: 87 -RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 R + N ++ S SR Y K P+ + AVTGT+GK+SV F +QI Q SG ++ Sbjct: 74 TRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQNSGYNA 133 Query: 145 FQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T + + N LTTP L L +S V H+ +E+SSHG+DQ+R+ G Sbjct: 134 ASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGIS---VEHLVLESSSHGIDQYRIHG 190 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +KL A +FTN +DH+DYH++ Y K RLF E+LP+ AI+ AD ++K A Sbjct: 191 LKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGALLKIAE 250 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +V++ G +G I L + + N Q +T+ ++ + ++ FP+ G+FQ YN L A G+ Sbjct: 251 KRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGI 310 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G++ + +EKL PGR E V + +VDYAHT ++L+ L +++ + Sbjct: 311 S---GLNYREIC--VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHIN 360 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +II+VFGCGG+RDQ KR MGKIA AD I+T N + Sbjct: 361 KKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITQANSK 400 >gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 491 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 151/484 (31%), Positives = 240/484 (49%), Gaps = 42/484 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + ++++++ DSR + G +F+ I G DGH F +A GA A+ Sbjct: 5 ELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELGAVAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 V + P++ V ++++ +++ A+ YG + ++ +TGT+GK++V Sbjct: 65 VAEKPVDV---------TIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + SG + IG I + + TTP + L + + +GV+ +E Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y AK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADD +E ++ V++ G K A + I+ G F+ Sbjct: 236 AVLNADD---EESVRMQTATAAHVITFGI--------KENADFRATNIEITSHGSTFNLT 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I + +E + V GRFE V + Sbjct: 285 TPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQ 343 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDY+HT + L +L+ I + R+ VV GCGGDRD+GKRP M KIA+ A + Sbjct: 344 DFPVIVDYSHTPDGLLNVLQTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPV 403 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSE+P I ++I G+P ++ NR +AI+ AI DV+++AGKGHE Sbjct: 404 FTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHED 463 Query: 472 VHIV 475 I+ Sbjct: 464 YQII 467 >gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 495 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/448 (34%), Positives = 222/448 (49%), Gaps = 25/448 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--- 92 DSR + G FVAI G G F+ QA A GA A++ F + P+ Sbjct: 28 DSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL---------FEPPAPNGMPVPAD 78 Query: 93 -LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V R L + A + +G+ H ++ VTGT+GK+S + Q G + +G Sbjct: 79 AIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPTGTLGT 138 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 139 LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAV 198 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH Y AK +LF K A++ DDA+ + + A R + Sbjct: 199 FTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDAFGRTLFASLDPA-LRAI 255 Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + + + + + HN ++++G+ PL G F V N L AG A+ Sbjct: 256 GVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWAL 315 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 I A + L +L + GR +G + VDYAHT ++LE L ++R+ R+I Sbjct: 316 EIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLI 375 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEK 442 VFGCGG+RD GKRP M IA AD+AIVTDDNPRSED + I A+I+ G I + Sbjct: 376 CVFGCGGERDTGKRPQMAVIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAIVQ 435 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AI AI M + D++++AGKGHE Sbjct: 436 RDRAAAIHQAIGMASASDIVLIAGKGHE 463 >gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Arthrospira platensis NIES-39] Length = 498 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 171/501 (34%), Positives = 252/501 (50%), Gaps = 33/501 (6%) Query: 1 MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL+DL+ + PE L + +I ++++S + G +F+ + G + DG Sbjct: 1 MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117 F P AIA GA A +VS + + T P ++ + K + A+ Y HP Sbjct: 53 FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFY-NHPAQT 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYL 170 L + G +G + + I L + PT+ + + F + TTP + L Sbjct: 112 LKLVGVTGTNGKTTTTHLI---EFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVEL 168 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L+ G +E SSH L Q R+ G FTNL +DH+DYH T YF AK Sbjct: 169 QHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAK 228 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ- 289 LF + + AII ADD Y K++M R G RV S + ++ Sbjct: 229 ALLFSDDY-LQGKAIINADDDYGKKLMARL--GGDRVWSYSVSDPSADIWADSLVYQPTG 285 Query: 290 -QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q + F PL G++ + N L A G +A+G+D + +++ L VPGR E Sbjct: 286 IQGVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFGGVPGRMER 345 Query: 349 VGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA Sbjct: 346 VQISPEQNITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAA 405 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464 DL+D+A+VT DNPR+EDP++I +++ GIP ++ G+R +AIRTAI+ D +++ Sbjct: 406 DLSDLAVVTSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLI 465 Query: 465 AGKGHETVHIVTNGEKKMSVD 485 AGKGHE I+ G +K+ D Sbjct: 466 AGKGHEDYQIL--GTEKVHFD 484 >gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium MS024-2A] Length = 486 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/513 (31%), Positives = 259/513 (50%), Gaps = 56/513 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQD++Y E I + P++ V DSR+++ +++VA G + DGH FI Sbjct: 4 LQDILYGVSIEAIVGATTIPVKG-------VVFDSRNVKIDFVYVAQKGVQVDGHDFISH 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AI+ GA+ IV + A + + V+N+ K L + AS Y ++ V Sbjct: 57 AISNGAKVIVC------EFIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179 TGT+GK+++AS + + G + + I Q +N TTP I + K L + Sbjct: 111 TGTNGKTTIASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVE 170 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 GVTH +E SSHG+ Q+R++G+ G F+NL DH+DYH + Y + K + F+ LP Sbjct: 171 SGVTHCFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDS-LP 229 Query: 240 KESPAIIYADDAYSKEVM------------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 K + A+ DD ++ K+ + ++L + G + ++ Sbjct: 230 KTAFALTNVDDKNGTYMLQNTVAKKYTYAIKQHADFKAQILECQFSGMLLKIQ------- 282 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 Q+V S L G F N L + + + S +L+ + +L V GRF+ Sbjct: 283 SQEVWTS-----------LIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQ 331 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKI 405 + T ++ + VDYAHT ++LE +L+ I TI + +I V GCGG+RDQ KRP+M K Sbjct: 332 TLQTPNK-VTVVVDYAHTPDALENVLQTIATIRTRNETLITVIGCGGNRDQEKRPLMAKA 390 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEMLNKQD 460 A++ +D I T DNPR+EDP I ++++ G+P K R EAI A ++ + D Sbjct: 391 AVNFSDKVIFTSDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGD 450 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++++AGKGHET + NGE+ D DI +EI Sbjct: 451 IVLIAGKGHETYQEI-NGERFPFSDMDIAKEIF 482 >gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaribacter irgensii 23-P] Length = 488 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 231/457 (50%), Gaps = 33/457 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR F+A+ G DGHLFI +AI GA +V +DF + + V Sbjct: 30 DSRKAACNTAFIALKGVAIDGHLFIDKAINLGAIVVVC------EDFPKEQKEGVTYIQV 83 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +T+ L++ AS Y I + VTGT+GK++VAS + Q+ +++G +++G ST+ Sbjct: 84 SDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTTVASLLYQLFKKAG---YKVGLLSTV 140 Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TTP + + L + GV +E SSHG+ Q R +G+ G F Sbjct: 141 KVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFMEVSSHGIHQKRTEGLTFAGGVF 200 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL DH+DYH T AY N K F+ LPK + + DD + +++ + + + Sbjct: 201 TNLSHDHLDYHDTFAAYRNVKKHFFDT-LPKSAFVLANIDDKNGRFMLQNS-----KAIK 254 Query: 270 VGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 Y K KV + + T I+++G + L G F +YN +G++ Sbjct: 255 KTYALKTAADYKVKILEKQLSGTLIALDGT--EVWIKLIGVFNIYNVTAVIATAELLGLE 312 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386 +L L L V GRFE+V + G VDYAHT ++L+ +L+ I I G ++I Sbjct: 313 KLEILTILSALESVSGRFEYV-ISQDGVTAIVDYAHTPDALKNVLETINDIKIGAEKVIT 371 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--- 443 V GCGGDRD+ KRP M IA L++ I T DNPR+E+P+ I ++ GI K Sbjct: 372 VLGCGGDRDKTKRPKMAHIASQLSNQVIFTSDNPRTENPQTILEDMEAGIALQNYKKTLT 431 Query: 444 --NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +R +AIRTA + D+L++AGKGHE TNG Sbjct: 432 ILDRKQAIRTACKFSEPGDILLIAGKGHENYQ-ETNG 467 >gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR] gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR] Length = 495 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 166/485 (34%), Positives = 248/485 (51%), Gaps = 37/485 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ DSR +Q G+ F+ I G K DGHLF A+ GA I+ ++ + Sbjct: 23 QIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVENGATVIIAEKPVTVPSSVTVVTV 82 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++TR+ L+ + Y +P NI+ VTGT+GK++ ++ I ++G Sbjct: 83 -------EDTREALAYMGAAFY-DYPGDKLNIIGVTGTNGKTTTTHLIENILVKAGK--- 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + D L TTP + L L+ + GV + +E SSH L+ +R+ G Sbjct: 132 KVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMVDAGVDYAVMEVSSHALELNRVAG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 + FTN+ +DH+D+H+T Y AK +LF L + II DD+ + Sbjct: 192 CEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSRNKYGIINIDDSKGQSF 251 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ H +V++ G Q + +K+ + T D L G F VYN+ Sbjct: 252 LEVTHG---QVITYGIQSAADVRAEKIDLRSDGVSFTAVTPRGSVDLKLNLTGLFNVYNS 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + I ++ E LE++ VPGR E V + VDYAHT + LE +L Sbjct: 309 LAAVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFA-VLVDYAHTPDGLENVLSA 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R T GR+I VFGCGGDRD+ KRPIMG+++ L+D ++T DNPRSE P +I +I G Sbjct: 368 AREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDFTVLTSDNPRSESPAEILRDIEEG 427 Query: 436 IPGFI--EK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC-DI 488 + I EK +R EAIR A+ M DV+V+AGKGHET IV G K + D ++ Sbjct: 428 VKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAGKGHETYQIV--GTKVLPFDDREV 485 Query: 489 IREIL 493 EIL Sbjct: 486 AMEIL 490 >gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA6140] Length = 492 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter baumannii AB307-0294] gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013150] gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Acinetobacter baumannii 6013113] Length = 500 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 237/474 (50%), Gaps = 52/474 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSLQ 80 QW ++ + S DSR ++ G IF+A+ + F A+A GA A++ + + Sbjct: 16 QWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTFFAEAALANGALAVISETELGVA 75 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV--- 133 + V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 NE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAEL 125 Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 QQ C G + I P T S+ TT + L AL + QG T S+EA Sbjct: 126 ISSQQQRCAVMGTTGNGILPNLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 179 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I D Sbjct: 180 SSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQ--FNSLKVAVINLD 237 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304 DA++ +++ A N + + Y L + A + + S+ G F+ + Sbjct: 238 DAHADLMIESAQNNPAQPKILTYS-----LTQNTADYYITDLNYSLAGATFNLVSQQGSF 292 Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G F V N + A G D ++ + KL PGR + + + R V Sbjct: 293 AVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVV 350 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNP Sbjct: 351 DYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNP 410 Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 R+EDPE+I A++ GI E +R EAI+ E D++V+AGKGHE Sbjct: 411 RTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHE 464 >gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter tundripaludum SV96] Length = 538 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 156/500 (31%), Positives = 248/500 (49%), Gaps = 53/500 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT----P 91 DSR + G +FVA+ G K+ G + QA+ GA A++ A + + + R ++ P Sbjct: 39 DSRELVCGDVFVALAGAKQHGLAHVEQAVNNGACAVIFDPAGNGRQLAEAFRCDSSTPVP 98 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V+N L A+R Y + ++ +TGT+GK+S + F+ Q+ G+ IG Sbjct: 99 MIAVENLGLKLGELAARFYCDPSQFMTVIGITGTNGKTSCSQFLSQMLDDCGI----IG- 153 Query: 150 TSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + + N+ TTP + + K L+ L V++E SSHGL+Q R++G+ Sbjct: 154 TLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVAMEVSSHGLEQGRVNGVTFKGA 213 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTN+ RDH+DYH T AY AK+ L ++ P + A + DD YS+ V+ A ++ Sbjct: 214 VFTNISRDHLDYHGTMDAYVQAKLALLKQ--PGLAFAAVNLDDGYSERVIA-AVPESVQL 270 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVA 318 +GK + + N + +G +FD F PL G+F V N L Sbjct: 271 WQFSVKGKTADSGECVSAEN---ILHKTDGIEFDVRFRDELQRVQVPLFGDFNVENVLAV 327 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +A+ + ++ L + V GR E G + I+VDYAHT ++L+ +L ++R Sbjct: 328 LTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETDP-MIFVDYAHTPDALDKVLSSLRK 386 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + VVFGCGG+RD GKRP MGKIA AD ++TDDNPR E+ I +I+ G Sbjct: 387 HCKQALWVVFGCGGNRDTGKRPQMGKIAEQWADHVVITDDNPRYENGLDIVNDILAGCSS 446 Query: 439 FIEKG-------------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVH-----I 474 + G NR +AI+ + K D +V+AGKGHE Sbjct: 447 TAKDGGSVATDMEPVRPAKVEVIQNREQAIQKVVASAAKNDCIVIAGKGHEQYQESNGVC 506 Query: 475 VTNGEKKMSVDCDIIREILG 494 V ++++ +D R++LG Sbjct: 507 VPFSDRQVVIDALDRRKVLG 526 >gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacter sp. M21] gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21] Length = 505 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 162/487 (33%), Positives = 238/487 (48%), Gaps = 46/487 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + G +F A+ G K DG F+ A+ GA AIV + + Sbjct: 22 EIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGGAVAIVADRPCACPGVT----- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 ++VV + R +SL A+ YG I V T + V+ I +++G+ S Sbjct: 77 ---VVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTTTYLVEGIMEQAGVPSAV 133 Query: 147 IGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S + N TTP + L + L L G +E SSH L+Q R+DG Sbjct: 134 LGTISYRFAATEIPAPN--TTPESVDLQRILRELVDLGARGAVMEVSSHSLEQRRVDGCL 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP---AIIYADDAYSKEVMK 258 FTNL RDH+DYH ++YF +K+RLF +LL E P A++ DD + + Sbjct: 192 FDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPLRRAVVNLDDPFGPRI-- 249 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A A VL+ GK I + + + + + + + L G F +YN L Sbjct: 250 -AEKASAPVLTYSMTGKADISVAEAEFTVDGIRCRLDTPVGEISLVSELLGRFNLYNILS 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G +A+G + +E VPGR E V + G + VDYAHT ++LE +L + Sbjct: 309 AVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-ESEEGITVLVDYAHTGDALENVLSTVS 367 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 + + RII +FGCGGDRD+GKRP+MG+IA +D+A++T DNPR+E+P I ++ GI Sbjct: 368 ELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAVITSDNPRTEEPSAILDDVRAGIL 427 Query: 437 -------------PGFIEKG-NRIEAIRTAIEMLNKQ----DVLVVAGKGHETVHIVTNG 478 GF EKG IE+ R AI D++++AGKGHE IV G Sbjct: 428 PLGLREYGLEELAAGFHEKGFATIESRRAAIRAALLAARPGDIVILAGKGHEDYQIV--G 485 Query: 479 EKKMSVD 485 +K D Sbjct: 486 TEKFHFD 492 >gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 495 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 172/492 (34%), Positives = 252/492 (51%), Gaps = 40/492 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVAI G++ DG +IPQAIAQG A++ + + + + I Sbjct: 20 RELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGVAAVIAEAQGEVDNGTVQIM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ V++ LS A Y HP + L + G +G + + Q + Q S + Sbjct: 80 HGVPVVYVNDLNNKLSQLAGEFY-CHPGDKLHLIGVTGTNGKTTTTQLLAQWS----HGL 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L L Q T ++E SSHGL Q R+ Sbjct: 135 GETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFAAMEVSSHGLVQGRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH + Y AK LF K+ II ADD + + R Sbjct: 195 AALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQ--IINADDEIGLKWLSR 252 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQ 311 A L +QG+++ +++ H+K V+I+ E G D L G F Sbjct: 253 LPQAVAVTMENRLPENWQGRWLAAREI-KYHDKG-VSITFESSWGGGTIDS--SLMGAFN 308 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A +A+ +LE L V GR E T + + VDYAHT ++LE Sbjct: 309 VSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKP-VVVVDYAHTPDALEK 367 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L R G++ VFGCGGDRD+GKRP+MG +A LAD IVTDDNPR+E+P+ I A+ Sbjct: 368 ALMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADYVIVTDDNPRNEEPQAIIAD 427 Query: 432 IIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV- 484 I + GF++ G R+EA+ AI DV+++AGKGHE +V G +++ Sbjct: 428 I---LTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKGHEDYQLV--GHRRLDYS 482 Query: 485 DCDIIREILGLI 496 D + +LG+I Sbjct: 483 DRLTVARLLGVI 494 >gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 780 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 155/510 (30%), Positives = 265/510 (51%), Gaps = 49/510 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ E +I + DSR + AG +FV VG + DGHL++ +A +GA Sbjct: 247 ELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADKRGAV 306 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGK 126 A+V S +++ +++V++T L ++ Y K+P +AV +GT+GK Sbjct: 307 AVVASKEIDIEETLGC----KALVIVEDTNAVLPALSAAFY-KYPSKNMAVIGISGTNGK 361 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQG 181 ++ A ++ + + GL + G ST++ + DN+L TTP + + ++ + G Sbjct: 362 TTTAYLIKGMYEAMGLRT---GMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNG 418 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELL-P 239 V +EASSHGL R D + FTNL DH+D +H T++ Y +AK +LF ++ P Sbjct: 419 TEAVVMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFARMVDP 478 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297 + I+ DD+ + + + N V++ + K +H K + QV ++ Sbjct: 479 ERHRKIVNIDDSNASFFIAQG-NPDVPVVTFAIENKSADVHPLKFELSLFETQVLVNTPH 537 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G +YN L A + IA+G ++ +E++ VPGR E + G Sbjct: 538 GILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGV 597 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 I VDYAHT + L ++L ++R + RII V GC G+ D+GKRP+M K+A D +++ ++T Sbjct: 598 I-VDYAHTPDGLSILLDSVRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVTMLTS 656 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---------------KGNRI-------EAIRTAIEM 455 DNP++EDP I +++ G+ ++ G+R+ A+R A+ M Sbjct: 657 DNPKNEDPLDILDDMLAGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRCAVAM 716 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + D++V+AGKGHET I G+KK D Sbjct: 717 GEEGDMVVIAGKGHETYQI--EGDKKEFFD 744 >gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas gardneri ATCC 19865] Length = 491 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 226/451 (50%), Gaps = 17/451 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR ++AG FVAI G G F+ QA A GA A++ + + Sbjct: 17 QVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPAELPAPADAI 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L R L A + +G+ + ++ VTGT+GK+S + Q G+ + Sbjct: 77 AVPGL-----RARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQLLAQALTLLGMPTGT 131 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 132 LGTLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFD 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH Y AK +LF K A++ DD + + + A + Sbjct: 192 VAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDDFGRTLFA-ALDPAL 248 Query: 266 RVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R + V + + + + A+ HN +++ G+ PL G F V N L AG Sbjct: 249 RAIGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFNVDNLLAVAGAL 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A+ I A + E L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 309 YALDIAPAQIAEVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALASLRSHAQD 368 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 369 RLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVADILRGFARPDAA 428 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 429 IVQRDRAAAIHQAISMASASDIVLIAGKGHE 459 >gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylobacillus flagellatus KT] Length = 474 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 166/481 (34%), Positives = 237/481 (49%), Gaps = 40/481 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++SDSR AG +F+A G + DG FI QAIA GA ++ + + F Sbjct: 14 MTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVI----WEQEGFDWNPAWTVDH 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V R S A + YG HP ++ VTGT+GK+S + ++ Q + IG Sbjct: 70 QPVTGLRGQASAIAGQFYG-HPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIGT 128 Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 A + TTP PI L L+ G ++E SSHGLDQ R++GI Sbjct: 129 LGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKVAV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH +Y +AK +LF AI+ DDA+ + ++ G VL Sbjct: 189 LTNLTRDHLDYHGDMASYADAKRKLFH--FGGVQAAILNQDDAFGRALLSELKAKGKHVL 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA------AGLC 322 S G G VC + EG P GE V+ LV Sbjct: 247 SYGLSGG-----DVCG----HDLHFDAEGLHMQVHTP-QGEAMVHAKLVGRFNASNLLAV 296 Query: 323 IAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNI 376 +A + S + LE L + PGR + +G GG+ + VDYAH+ ++LE L + Sbjct: 297 LATLLASEVALEDAVRVLADIRPAPGRMQQLGG---GGQPLVVVDYAHSPDALEKALNAL 353 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +I VFGCGGDRD+GKRP+M ++A LAD IVT DNPR+EDP++I AE++ G+ Sbjct: 354 REQAKANLICVFGCGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGL 413 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 P +E +R +AI AI DV+++AGKGHE V+ G + D ++ ++LG Sbjct: 414 HGPAQVEP-DREQAITQAIRAAQAGDVVLIAGKGHEDYQEVS-GVRYPFNDAEVAAKVLG 471 Query: 495 L 495 + Sbjct: 472 V 472 >gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 503 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 171/486 (35%), Positives = 254/486 (52%), Gaps = 46/486 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL---QDFSATIRSNTPI 92 DSR+I G +FVA+ G+K DG L+I AI +GA A+++ S + + +S + + P+ Sbjct: 30 DSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHL-NKIPV 88 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V+ ++LS A Y HP +++ VTGT+GK+++ + + Q G S +G Sbjct: 89 VHVNYLPRYLSDIAGSFY-NHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSAVMGT 147 Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +++ N TT S I K LS +T V++E SSHGL+Q+R+D + A Sbjct: 148 LGNGMLNNMCLSNN-TTCSSIDAQKILSQFVKDKITFVAMEVSSHGLNQYRVDALYFKAA 206 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-- 265 FTNL DH+DYH Y +K RLF+EL ++ II ADD + A Sbjct: 207 IFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEK--YIINADDPVGCRWLYYLPQAIAVT 264 Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYN 314 R L ++GK+I CA+ +V + G D F L GEF V N Sbjct: 265 ITRNLPFFWKGKWI-----CAL----KVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A G + +G +L++ +L V GR E ++ I VDYAHT ++LE +L Sbjct: 316 LLLALGTLLILGYPLSLLVHTSSQLQPVAGRMEVFRSHGYPTVI-VDYAHTPDALEKVLI 374 Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +IR G++ VFGCGGDRD KR +MG I AD I+T+DNPR+E+P+ I +I Sbjct: 375 SIRQFYYWGQLWCVFGCGGDRDPSKRALMGCIVSRYADYIIITNDNPRTEEPQSIINDIT 434 Query: 434 HGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 GI I+ NR AI+TAI + +DV++++GKGHE I+ N S D D Sbjct: 435 RGITHRKKIIKIIQ--NRCCAIQTAILKASLEDVILISGKGHEKYQIIGNNRIYHS-DKD 491 Query: 488 IIREIL 493 I+ L Sbjct: 492 IVENFL 497 >gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Deferribacter desulfuricans SSM1] Length = 480 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 234/454 (51%), Gaps = 19/454 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ ++S D+R I+ IFVA G D H I + I ++V+ ++F Sbjct: 21 EYEVADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLVTE----KEF---- 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P +VV N R+ LS+ + + K+ E N + VTGT+GK++ A + I + +G + Sbjct: 73 --DFPTIVVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTA 130 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + G + I + TTPS K L V +E SSH LDQ R+ GI Sbjct: 131 RFGTINYKIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEVSSHALDQDRVYGINF 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +TNL DH+DYH+ YFN+K +LF E L I+ DD Y K+++ + Sbjct: 191 NYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL--NGCGIVNIDDEYGKKLLYLIKDNE 248 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S ++ +K + +++ G+ F L G+ +YN + A Sbjct: 249 ILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHH 308 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +GID + ++ VPGR E + N+ I++DYAHT ++LE +L ++R RI Sbjct: 309 LGIDHDRITRAIKTFSNVPGRLEKLIYNNI--YIFIDYAHTDDALENVLSSLRPFRKRRI 366 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441 I +FGCGGDRD+ KRP M K+A +D+ +VT DNPR+EDPEKI I+ G + Sbjct: 367 ITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSDNPRNEDPEKIIDGILKGFGDKSKVVV 426 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + +R EAI+ A++ +D++++AGKGHE ++ Sbjct: 427 EPDRREAIKLALKEAEPEDIVLIAGKGHEDYQLI 460 >gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. A1055] Length = 492 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 230/465 (49%), Gaps = 32/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 IR G+II VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 368 IREFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKG 427 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++E AI AI M + D++++AGKGHET I+ Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472 >gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 499 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 241/475 (50%), Gaps = 53/475 (11%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +QW ++ + S DSR +++G IF+A+ E +F A+A GA AI+ + L+ Sbjct: 15 VQWSKQPFHGFSLDSRKVESGQIFIALTSYSQPEKTRIFAESALANGALAIISETELGLE 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV--- 133 + V N R+ + + R + P I+AVTGT+GK++++ + Sbjct: 75 NE----------WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLIAEL 124 Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 QQ C G + I P T S+ TT + L AL + QG T S+EA Sbjct: 125 ISSQQQQCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYTKQGATFASLEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL+G + ++NL RDH+DYH T +AY AK LF A+I D Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLD 236 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304 D Y+ ++ A + + Y L + A + ++ S+ G F+ + Sbjct: 237 DEYAALMINAAKQNPAQPKILTYS-----LTQNTADYYISDLSYSLAGATFNLVSQQGSF 291 Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G F V N + A G D ++ + +L PGR + + G R++V Sbjct: 292 AVQSPLLGHFNVENLIAALIAAEQAGFDLEALVAFVPQLIGAPGRMQVI---RDGERLFV 348 Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 DYAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DN Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 PR+EDPE+I A++ GI + + I R AI+ + +Q D++V+AGKGHE Sbjct: 409 PRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463 >gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata DSM 43183] Length = 515 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 231/465 (49%), Gaps = 43/465 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G ++VA+ G + G F QA A GA AI A + + + Sbjct: 33 VTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAAAAGAVAIWTDPAGRHRAAA----TG 88 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LV D+ R L AS +YG ++ + VTGTSGK++ ++ + +G+ + I Sbjct: 89 LPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGKTTTVYLLEAGLRAAGVDTAVI 148 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ D RL TTP L + + GV ++E SSH L Q R+ G Sbjct: 149 G---TVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAMEVSSHALAQGRVGGTC 205 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH T YF AK +LF + ++ DD Y +E+ Sbjct: 206 YDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVG--VVNVDDGYGREL------- 256 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVY 313 R+ V F A + V + +G F + P LPG F V Sbjct: 257 -TRIAQVPLT-TFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQLPGPFNVA 314 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A + G+ + + L VPGR E + + VDY+H ++E +L Sbjct: 315 NALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPI-DEGQDFTALVDYSHKPGAVEAVL 373 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++R +T+GR+IVV GCGGDRD+GKRP+MG+ A LAD+A++TDDNPRSEDP I A ++ Sbjct: 374 TSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPLAILAAMV 433 Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ + + +R AI A+ + DV+V+AGKGHE Sbjct: 434 EGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHE 478 >gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis JLW8] Length = 487 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 156/447 (34%), Positives = 238/447 (53%), Gaps = 17/447 (3%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR + G +F+A G DG +I QA+A GA A++ S QDF Sbjct: 14 VTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDS----QDFVWNAAIKVSN 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + ++ A+ Y ++P +++ VTGT+GK+SV+ ++ Q Q G + IG Sbjct: 70 LGVRELKSQVAQIAAEFY-QYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIGT 128 Query: 150 TSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + + A N L TTP I L K L+ ++QG V +E SSHGLDQ R++ I+ Sbjct: 129 IGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRVNAIEF 188 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL RDH+DYH T AY +AK +LF+ P AI+ ADD + K++ + Sbjct: 189 DFAVFTNLTRDHLDYHVTMDAYASAKQKLFD--WPSLRTAIVNADDDFGKKMAESLRVNN 246 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +L+ G + ++ + + +S + G F YN L +A Sbjct: 247 KSLLTYGLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVLATLLA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + + + ++ V GR + G N + + VDYAHT ++LE +L ++R T G++ Sbjct: 307 RQVPLNEAIAAIAQIKPVAGRMQQFGGNDKP-LVVVDYAHTPDALENVLVSLREQTQGKL 365 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 + VFGCGGDRD GKRP+MG IA A +VT DNPRSE+P +I +++G+ Sbjct: 366 VCVFGCGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHVVNGMTVLPSVAP 425 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AI+ AI+ NK DV+++AGKGHE Sbjct: 426 DRAIAIQQAIKFANKDDVVLLAGKGHE 452 >gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 491 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 158/508 (31%), Positives = 256/508 (50%), Gaps = 36/508 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+Y ++++ P+ + D+ + G ++VA+ G++ G + Sbjct: 1 MKLSELLYGHDHQVLHGDQDTPIT------SGPCLDADRVTPGSLYVALPGHRAGGPEAL 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 +A+A+GA A++V A + ++ V + R +L ++R +G+ +++ Sbjct: 55 GEALARGAAAVLVEGPDPAGHRPAD--TGACVVRVPDARIATALVSARYHGEPGRAMDVV 112 Query: 119 AVTGTSGKSSVASFVQQICQRS--------GLSSFQIG--PTSTISSFAQDNRLTTPSPI 168 AVTGT+GK+SV+S + + S G S ++G P S L+TP Sbjct: 113 AVTGTNGKTSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSV-----LSTPESP 167 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L L+ + +G V +EA+S GL HR+DG + G FTNL +DH+D H T ++Y Sbjct: 168 DLQYLLACMRDRGGDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTR 227 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 AKM LF+ + + A++ ADD + A +V + + + Sbjct: 228 AKMLLFQGMCRR---AVVNADDPVGAAIPALMPGA-VTTYAVDADADY-RATDLVVDSSG 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + +G+ + P+PG F V NAL A C +G D +++ L+++ +PGRFE Sbjct: 283 TRFVLHHDGRKYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEH 342 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 GT G + VDYAH+ +SL+ +L IR R++ VFGCGGDRD KR MG+IA Sbjct: 343 FGT-PEGVSVIVDYAHSPDSLDKVLCTIRGFAPRRVLTVFGCGGDRDTTKRARMGEIAAT 401 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464 +D+ ++T DNPR EDPE I ++ GI F G+R AI A+ DV++V Sbjct: 402 YSDLCVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLV 461 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREI 492 AGKG ET H G+ D ++R + Sbjct: 462 AGKGSET-HQSVGGDLVPFDDMTVVRGL 488 >gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID18] gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID18] Length = 492 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21] Length = 496 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 241/472 (51%), Gaps = 38/472 (8%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + + I +++ DSR G +F+ +VG DGH +I +A + GAEA++V Sbjct: 22 KNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLGAEAVLVEKDVPPVPGLVM 81 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 IR V +T++ ++ A Y +P + + G +G + + + + Sbjct: 82 IR-------VKSTQETMTELAPWFY-DYPAQKMRMIGITGTNGKTTTTNILRTLLTNTGH 133 Query: 146 QIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI+ D + TTP + L + L ++ G +V +E SSH L +R+ G Sbjct: 134 KVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVMEVSSHALALNRVAG 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMK 258 I+ + TN+ +DH+D+H+T + Y AK LF L K AI DDA S +M Sbjct: 194 IEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKTAIFNMDDASSPLIMN 253 Query: 259 RAHNAGCRVLSVG-------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 R +V++ G Y +F V A H ++++ + D + GEF Sbjct: 254 RVKT---KVMTYGKARTNDVYPIRF----HVGAKH--MELSLHTPEGNMDLRLHITGEFN 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN + A +A G+ ++ L+ VPGRF+ + + + VDYAHT + L+ Sbjct: 305 VYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDA-GQPFTVIVDYAHTPDGLDN 363 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ R IT GR+ VFGCGGDRD KRPIMGK+AL+LADI +VT DNPRSEDP+ I + Sbjct: 364 VLRTARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPRSEDPDTIIRD 423 Query: 432 IIHGI---PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I G P E +R EAI+ AI +DV+++AGKGHE I+ + Sbjct: 424 IETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQILKD 475 >gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinibacter ruber M8] Length = 522 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 165/481 (34%), Positives = 238/481 (49%), Gaps = 36/481 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + G FVAI G DGH FI A+ GA +V + R Sbjct: 62 IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCEA------LPTRARER 115 Query: 90 TPILV---VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG--- 141 P +V V +TR L+ A+ L+G + ++ VTGT+GK++VA V + + G Sbjct: 116 FPGVVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETA 175 Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 LS+ ++ ++ A LTTP P+ L + L + +G T ++E SSH LDQ R+ Sbjct: 176 GLLSTIEVRAGGETTAPA----LTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRV 231 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G+ FT L DH+DYH T Y AK LF+ L P ++ A+ DD ++ Sbjct: 232 HGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGP-DATALYNTDDEAGPTMVA- 289 Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + RV+S G + I + A + Q+V + +D L G F N A Sbjct: 290 --DTEARVVSFGLDRDADIEATVLEARLDGQRVRLDGHERDTQ----LAGRFNASNMAAA 343 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G A+G V + L VPGR E + G + +DYAHT ++LE +L+ +R Sbjct: 344 YGTGTALGHVPEAVADALADAPPVPGRVEPLRFED-GTTVIIDYAHTPDALENVLRTVRD 402 Query: 379 ITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 T + + VFGCGGDRD GKRP MG+IA LAD IVT DNPR+E P I +I G+ Sbjct: 403 TTPAKAALWCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDIRDGV 462 Query: 437 --PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R EAI+ A + DV+V+AGKGHET + + D ++ R Sbjct: 463 ERPESMRWIVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTRPFD-DREVARRYF 521 Query: 494 G 494 G Sbjct: 522 G 522 >gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA19] Length = 492 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 458 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 149/471 (31%), Positives = 242/471 (51%), Gaps = 34/471 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTP 91 + ++SR ++ G F+AI DGH +I +AIA GA I+ +Y ++ Sbjct: 5 LKTNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEHGSYKVE----------- 53 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V++TR++L + Y ++I + +TGT+GK++ QI + + + Sbjct: 54 TIIVESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILK---MLKKNVAY 110 Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 TI + D + TTP L L GV + +E SSH LD+ R+ G++ Sbjct: 111 MGTIGFYYGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFD 170 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 +FTNL +DH+DYH+T + Y NAK LF + + AII DD + + + ++N Sbjct: 171 EVAFTNLTQDHLDYHKTLENYANAKRILFTKT-RNDKIAIINGDDEHYQHFVLESNNN-- 227 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +G + + ++ H ++ + G + +YN L+A L + Sbjct: 228 --IIIGQHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKL 285 Query: 326 GIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G+ +L +KL GR E + GTNS I+VDYAHT +++ +LK+ +GR Sbjct: 286 GVKIEDILALNDKLKAPAGRMELLKYGTNS----IFVDYAHTPDAVINVLKSAEEFKNGR 341 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIE 441 II + GCGGDRD KRPIMGK AL+ +D I T DNPRSEDP+ I +I +G+ G F Sbjct: 342 IITIIGCGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEI 401 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + +R +AI ++ L D+L++ GKGHE I G+ S ++++ I Sbjct: 402 EVDRQKAIIKGMQQLKHNDILMILGKGHEDYQITKTGKHHFSDQEEVMKYI 452 >gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI2] Length = 492 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae FA 1090] gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria gonorrhoeae F62] Length = 492 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nostoc sp. PCC 7120] gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Nostoc sp. PCC 7120] Length = 496 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 165/497 (33%), Positives = 246/497 (49%), Gaps = 28/497 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ ++ + P + ++ + ++S AG +F+ + G + DG F Sbjct: 1 MKLRELLAT-----VDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-----ILVVDNTRKFLSLFASRLYGKHPE 115 P AIA GA A +VS + N P ++ +N K + A+ YG + Sbjct: 56 PSAIASGAIAAIVSPQ--------AVEKNPPHDEAVVISSNNMTKACAAIAAAFYGYPGQ 107 Query: 116 NILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172 + V T + ++ ++ LS+ +G T F Q TTP + L + Sbjct: 108 KLKLVGVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQ 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L+ + G +E SSH L Q R+ G G F+NL +DH+DYH + YF AK Sbjct: 168 QLAQAVNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKAL 227 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF K AII ADD Y + ++K SV + + + N T Sbjct: 228 LFSPEYLKGR-AIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGT 286 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + F PL G++ + N L A G + +G++ L+ + + VPGR E V N Sbjct: 287 IHTPEGNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQIN 346 Query: 353 -SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKI +LAD Sbjct: 347 PDQDISVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELAD 406 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468 +A VT DNPR+EDP++I +I+ GIP ++ G+R AIRTAI D +++AGKG Sbjct: 407 LAFVTSDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466 Query: 469 HETVHIVTNGEKKMSVD 485 HE I+ G +K+ D Sbjct: 467 HEDYQIL--GTEKIHFD 481 >gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella pneumoniae 342] Length = 495 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 240/471 (50%), Gaps = 33/471 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR + +F+A+ G++ DG +IPQAIAQG AI+ + +D Sbjct: 19 ERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAEDGEIRE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLSQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + LS L QG T ++E SSHGL QHR Sbjct: 134 LGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + ++ A FTNL RDH+DYH + Y AK L+ + AI+ ADD + + Sbjct: 194 VAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLA 251 Query: 259 RAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312 + +A + + G++ LK ++ TI + + + L G F V Sbjct: 252 KLPDAVAVSMEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGNGEIESRLMGAFNV 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE Sbjct: 310 SNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKA 368 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I Sbjct: 369 LQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI 428 Query: 433 IHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G ++ G+ R EA+ A+ + DV++VAGKGHE IV N Sbjct: 429 ---LAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 476 >gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis L2TR] Length = 487 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 152/473 (32%), Positives = 240/473 (50%), Gaps = 19/473 (4%) Query: 13 ELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 +L L++ P + + ++ + DSR + G +FVAI G + DG +I +A Sbjct: 2 KLAELLTMLPTSFSVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYI----DAAIDA 57 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKS 127 + + R ++ R+ LS A +G HP N++ VTGT+GK+ Sbjct: 58 GAAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFG-HPSEKMNLVGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV + Q+ + G+ + IG T S + R TTP + + + L+ L ++G V+ Sbjct: 117 SVTHIMAQLAKALGMEAAVIGTTGSGLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVA 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R++ + A + TN+ RDH+DYH T + Y AK RLF + + ++ Sbjct: 177 MEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNR--VV 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFP 305 ADD + L+ + V H + V +++ +G+ P Sbjct: 235 NADDDTLSHWQQDDLADLWVSLNASPNEPCLQATGV-QFHEQGSVFSLNWQGESCVVETP 293 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYN L A + + + A + + +L VPGR E N++ + VDYAHT Sbjct: 294 LLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAF-HNNQSPLVVVDYAHT 352 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L +R GR+ VFGCGGDRD+GKRP MGK+A D AD+ +VTDDNPR+E Sbjct: 353 PDALHQVLSALRLHCKGRLWCVFGCGGDRDRGKRPQMGKVAADYADVVVVTDDNPRTEPA 412 Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E+I +I+ GI + R EA+ A++ K DV+++AGKGHE ++ Sbjct: 413 EQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKGHEDYQVI 465 >gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae TMO] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 163/514 (31%), Positives = 264/514 (51%), Gaps = 59/514 (11%) Query: 6 LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 ++ ++ E I+++++ + I +++ S ++ G++F+ G++ D H + I Sbjct: 1 MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVT 121 +GA +VV S+ DF P +VV ++R S+ S LY P N L +T Sbjct: 61 KKGASFLVVEHPISV-DF--------PHVVVSDSRLAESIL-SALYYDDPFNKLLTIGIT 110 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-------SSFAQDNRLTTPSPIYLAKAL 174 GT+GK++ A + + G + +G TI F DN TTP I + KA+ Sbjct: 111 GTNGKTTAAHLFHHVLKTLGSNGSMLG---TIYYDILGEQKFHHDN--TTPDAIEILKAM 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + H +E SSH L R++ +K + TN+ RDH+D+HQT Y K+ +F Sbjct: 166 KNTVDRSGKHFVMEVSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIF 225 Query: 235 EELLPKESPAIIYADDAYSKEVMKR--------AHNAGCRVLS--VGYQGKFIHLKKVCA 284 + LL + A++ D + V KR + N+ R+LS + G LK Sbjct: 226 D-LLKEFGIAVV--SDEFEHIVNKRVKKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFG 282 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-LVAAGLCIAIGIDSALVLEHLEKLHVVP 343 H + +I++ PG YNA LV A LC +G D ++E ++ V Sbjct: 283 EH---KCSINI-----------PGIHNAYNATLVIASLC-ELGYDIESIIEAIKSFEGVE 327 Query: 344 GRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GRF+F+ + G I VD+AH+ ++LE L R I SGRII VFG GG D+GKRP+M Sbjct: 328 GRFQFIREGTLVGIDIVVDFAHSPDALEKTLITARKIASGRIITVFGAGGQADKGKRPMM 387 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 ++ +D++I+T D+PR EDPE+I E+ G+P ++ +R EAI TA+ + N+ Sbjct: 388 AEVVCRYSDVSIITTDDPRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRG 447 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D+++VAG+GHE I ++ K D ++IR+IL Sbjct: 448 DMVIVAGRGHEEYQIFSDERKIPFKDAEVIRKIL 481 >gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha14] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + I T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M13399] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 471 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 233/454 (51%), Gaps = 21/454 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYL 63 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S +G Sbjct: 64 SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH Y AK L+ AI+ ADD + + +A V G+ Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA-VAVSMEGH 240 Query: 273 -----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+++ + V + + D + L G F V N L+A +A+G Sbjct: 241 INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +L+ +L V GR E V T + VDYAHT ++LE L+ R +G++ V Sbjct: 301 PLTNLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444 FGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G ++ G Sbjct: 360 FGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGMLDAGQVRV 416 Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R EA+ AI DV+++AGKGHE IV Sbjct: 417 MEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 450 >gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 471 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 163/454 (35%), Positives = 233/454 (51%), Gaps = 21/454 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S +G Sbjct: 64 SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH Y AK L+ AI+ ADD + + +A V G+ Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADDEVGRRWLASLPDA-VAVSMEGH 240 Query: 273 -----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+++ + V + + D + L G F V N L+A +A+G Sbjct: 241 INPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGY 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +L+ +L V GR E V T + VDYAHT ++LE L+ R +G++ V Sbjct: 301 PLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCV 359 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN--- 444 FGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G ++ G Sbjct: 360 FGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGMLDAGQVRV 416 Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R EA+ AI DV+++AGKGHE IV Sbjct: 417 MEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 450 >gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria cinerea ATCC 14685] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 225/460 (48%), Gaps = 35/460 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +I AIA GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYISAAIANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K AII DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCSD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + +H T S +G + F P L G F N Sbjct: 258 LAV-YSYGFSGNADIRIVH----FTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPFDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P + +R AIR A+E D++++AGKGHE V Sbjct: 432 PTPECVEADRAAAIRYAVERATANDIILIAGKGHENYQDV 471 >gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 486 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 246/466 (52%), Gaps = 41/466 (8%) Query: 25 WRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 W+E R+ +V SDSR + G IFVA+ G K G+ FIP+A+ +GA A VV+S + Sbjct: 4 WKEIINEARQGRQVRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGA-AFVVASEPAG 62 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQIC 137 QD +L +N L A +G + ++ VTGT+GK++ + ++ I Sbjct: 63 QDR---------VLHHENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIF 113 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G ++ G T++ L TTP + L + L+ + + GV V +EASSH Sbjct: 114 TSIG---YKTGVLGTVNYRWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHA 170 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAY 252 LDQ RL GI + FT L RDH+DYH + YF AK +LF P+ ++I DD + Sbjct: 171 LDQKRLAGIDIHVAVFTGLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPH 230 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +++ A RV+ G Q F HL + A + + S +G+ + LP Sbjct: 231 GRDLAGEAP----RVMGYGLQKNFSPELQGHLVQSTA--SGLVMECSHQGRSWTISCSLP 284 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G N L A G I +G++ + L+ L +PGR E V G IYVDYAHT + Sbjct: 285 GIHNAQNLLAAQGAGICLGLEPEH-FDCLKDLGPIPGRLEKV-PAPEGINIYVDYAHTPD 342 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE + ++ ++ R+ V+FGCGGDRD+GKRP M + AD +T DNPR E+P + Sbjct: 343 ALENVCLALKELSFSRLAVLFGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGE 402 Query: 428 IRAEIIHGIPGF--IE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I +I+ G+ G +E + +R +AI+ A+ +L + L+VAGKGHE Sbjct: 403 IIKDILPGLAGHPCVEVEPDRRQAIQKAVSLLAPGEALLVAGKGHE 448 >gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella equigenitalis MCE9] Length = 909 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 240/478 (50%), Gaps = 49/478 (10%) Query: 23 MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W ++ ++ + DSR IQ G +FVA G+K DG F+ AI GA AI++ Sbjct: 5 LNWLKQHVDLDAHLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILI------ 58 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 +D + TP+LVV N R+ L A YG I +A+TGT+GK+S A ++ + Sbjct: 59 EDNLDIVVLQTPVLVVKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKAL 118 Query: 138 QRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + IG TI ++ LTTP + + + L+ L ++G+ V++EASS G++ Sbjct: 119 NSINIPCATIGTLGTILPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIE 178 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 Q RLD +++ FTNL DH+DYH++ Q Y AK LF L AI DD Sbjct: 179 QGRLDSVQIKIAGFTNLTLDHLDYHKSMQEYEEAKTSLF--LRDGLECAIFNLDDMAGVR 236 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305 E K + N G +LS A+ ++ G F+ P Sbjct: 237 MYEKSKASRNLGYSILS-----------NSKAVITASELEFHDYGLSFNIQLPEGKSQVI 285 Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSR---GG 356 L G +YN L+ AG+ + + ++E + + VPGR + V ++SR Sbjct: 286 TRLAGRHNIYNLLLVAGVLSHLNVSVEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLP 345 Query: 357 RIYVDYAHTSNSLEMILKN---IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 +YVDY+HT ++L +K ++ I G++ VFGCGGDRD+ KRP+M K+A + AD Sbjct: 346 HVYVDYSHTPDALANAIKALEVVKNIRGGKMACVFGCGGDRDKTKRPVMAKVASECADDI 405 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR+E+ I +I+ G + +R I AI +K D +++AGKGHE Sbjct: 406 YITSDNPRTENASDILNDILKGAKKYSFSHIDRAYTILHAILNASKNDTILIAGKGHE 463 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 47/371 (12%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++++DSR +++ IF+AI G DGH F+ GA +VS + A +R Sbjct: 492 KINTDSRTLKSDEIFLAIKGENFDGHDFLETIDCIGA---IVSKP----NPKAKVRQ--- 541 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-SGLSSFQIGPT 150 +VD+T + A + ++AV G++GK++ + I + +G ++ Sbjct: 542 -FIVDDTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAY----- 595 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 FA L + I + K+L L+ V +H + L G+ K Sbjct: 596 -----FATRGNLN--NHIGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVV 648 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKRAHN 262 TN R+H ++ ++ +A +F+ L P+ SP Y D S+ Sbjct: 649 TNAQREHQEFMKSVEAVARENGSVFQSLDADGVAIYPRSSP-YSYIWDEQSRH------- 700 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 C+ ++ G G ++ + T+ VE + + + G+ + NAL A Sbjct: 701 --CKSITFGEAGS-VNATNISYDSEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATT 757 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTIT 380 ++ GID + L + V GR + + G + +D + +N +I + ++T+ Sbjct: 758 LSAGIDKKYIESGLAEFKAVKGRLQ--KHILKDGTVILDDTYNANPDSVIAAIDILKTLA 815 Query: 381 SGRIIVVFGCG 391 + R +V+ G Sbjct: 816 TPRTLVLGDMG 826 >gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria lactamica ATCC 23970] Length = 492 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHDLQHAVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L V Y F + T S +G + F P L G F N Sbjct: 258 LVV-YSYGFSEQADI----RITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAV 431 Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P + +R AIR A+E D++++AGKGHE V Sbjct: 432 PNPERVEADRAAAIRYAVERAAASDIILIAGKGHENYQDV 471 >gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 485 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 145/472 (30%), Positives = 244/472 (51%), Gaps = 56/472 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E I ++ +S+ I G +F AI G DGH FI +AI + A IV + T Sbjct: 20 EEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKKARVIVCQQLPEILPKEVT 79 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 + V D+T + A+ Y HP ++ VTGT+GK+++A+ + + + + Sbjct: 80 F-----LKVADSTIAMAQIAAN--YFDHPSQKLKLVGVTGTNGKTTIATLLYHLFRNT-- 130 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++G STI+ + + ++ TTP I L + + + +GVTH +E SSHG+ HR Sbjct: 131 -KHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFMEVSSHGIAMHR 189 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G+ G FTNL +DH+D+H+T Y N K + F+ L K++ A+ DD +++ Sbjct: 190 IEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDT-LKKDAFALTNIDDKNGNFMLQ 248 Query: 259 --RAH--NAGCR--------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 +AH N R +L + G + + +Q++ L Sbjct: 249 NTQAHKYNYALRTYADFKANILENAFSGLVLRI-------GQQEIWTH-----------L 290 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F YN L + +G+D V + + +L V GRF++ ++ + VDYAHT Sbjct: 291 IGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYF-ISAGNITVIVDYAHTP 349 Query: 367 NSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++L+ +L+ I++I S ++ + GCGG+RD+GKRPIM IA ++D I T DNPR ED Sbjct: 350 DALQNVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNPREED 409 Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P+ I E+ G+ ++ +R +AI+ A + + D++++AGKGHET Sbjct: 410 PQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHET 461 >gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624] Length = 499 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 238/473 (50%), Gaps = 51/473 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ + + DSR ++AG IF+A+ E F A+ GA A++ + + + Sbjct: 16 QWPQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKTRTFAEAALTNGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFV---- 133 V + R+ + + R + P I+AVTGT+GK++++ + Sbjct: 76 E----------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLIAELI 125 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 QQ C G + I P T S+ TT + L L + G T S+EAS Sbjct: 126 SSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNELHAYAKHGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK RLF+ A+I DD Sbjct: 180 SHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFK--FNSLKVAVINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL------- 303 A++ ++K A N + + Y L + A + ++ S+ G F+ + Sbjct: 238 AHADLMIKSAKNNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVGQQGSFA 292 Query: 304 --FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N + A G D ++ + KL PGR + + + R VD Sbjct: 293 VESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVD 350 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR Sbjct: 351 YAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPR 410 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 +EDPE+I A++ GI + + I R AI+ + +Q D++V+AGKGHE Sbjct: 411 TEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKGHE 463 >gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus opacus B4] Length = 524 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 157/454 (34%), Positives = 236/454 (51%), Gaps = 26/454 (5%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 ++ I G +F A+ G + G F A+ +GA AI+ A L SA + ++ P+LV D Sbjct: 47 AQGIVEGDLFAALPGARAHGAEFAADALDRGATAILTDEA-GLALVSA-LGTDAPVLVHD 104 Query: 97 NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153 + R L ++ +YG+ E ++ +TGTSGK++ + V+ +G ++ +G T + Sbjct: 105 DPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRM 164 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 S + LTTP L + + QG+ V +E SSH L R+DG++ G+FTNL Sbjct: 165 SGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLS 224 Query: 214 RDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSK---EVMKRAHNAGCRVLS 269 +DH+D+H+ + YF AK RLF E A+I DD + + EV + AH+ V + Sbjct: 225 QDHLDFHRDFEDYFAAKARLFAAESSVHAQHAVICVDDVWGRRMAEVARGAHSIVTTVAT 284 Query: 270 VGYQGKFIHLK---KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + V A +++ + EG D LPG++ V NA +A LC +G Sbjct: 285 TPETGGAVWTAGPATVSASGSQKFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLG 344 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRI 384 +D + + + V PGR + + RG VDYAH ++E ++ +R GR+ Sbjct: 345 VDPRDAVAGIAGVDV-PGRVQRI---DRGQDFLAVVDYAHKPAAVEAVIATLREQARGRV 400 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-- 442 VV G GGDRD GKRP+MG A AD+ I+TDDNPR+EDP IRA I G G E Sbjct: 401 AVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESER 460 Query: 443 ------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R +AI A+ DV++VAGKGHE Sbjct: 461 GQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHE 494 >gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria sicca ATCC 29256] Length = 492 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 230/473 (48%), Gaps = 26/473 (5%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP AIA GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG ++ + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGVELAGRLKK-DCPD 257 Query: 268 LSV-GY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L+V GY + I + A + + + L G F N L Sbjct: 258 LTVYGYGFSEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLC 317 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--S 381 A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ I Sbjct: 318 ANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQG 376 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440 + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ +P Sbjct: 377 AALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPEC 436 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AIR A+E D++++AGKGHE V G K D +I + L Sbjct: 437 VEADRAAAIRYAVERAASSDIILIAGKGHENYQDV-QGVKHHFSDFEIAEKAL 488 >gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Alteromonas macleodii ATCC 27126] Length = 521 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 163/502 (32%), Positives = 247/502 (49%), Gaps = 46/502 (9%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + +I ++ DSR + F+AI G++ DG FIPQAI+ GA I+ + Sbjct: 14 LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTED 73 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 S +R ++ I+ + + LS A+ Y + + +AVTGT+GK+S + Q Sbjct: 74 SSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSV 187 + G S IG + S F D TTP I + L+ V H + Sbjct: 134 LKDALGTRSASIGTLGS-SVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRHTAF 192 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASSH L Q RL +K FTNL RDH+DYH T + Y AK L ++ P ++ Sbjct: 193 EASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQ--PGLKAVVLN 250 Query: 248 ADDAYSKEVMKRAHNAGCRVLS------VGYQGKFIHLKKVCAIHNKQQ--------VTI 293 +D SK+ A + R+ + + G+ L++ HN Q + Sbjct: 251 VNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLRE----HNNPQSRHCFATNASY 306 Query: 294 SVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 G F+ + PL G+F + N L A G +A G V+ + + VPG Sbjct: 307 HAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPG 366 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + VDYAHT ++LE +L + + T+G++ VFGCGGDRD+GKRP+MG+ Sbjct: 367 RMEVFPVTG-AANLVVDYAHTPDALEKVLLSAKFHTTGKVWCVFGCGGDRDKGKRPLMGQ 425 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461 A AD ++T DN RSE PE I +II G+ + +R +AIR +E ++ D+ Sbjct: 426 AAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLEHAHESDI 485 Query: 462 LVVAGKGHETVHIVTNGEKKMS 483 ++VAGKGHE I+ G+KK + Sbjct: 486 IIVAGKGHEDYQII--GDKKTN 505 >gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. Fw109-5] Length = 534 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 165/488 (33%), Positives = 251/488 (51%), Gaps = 39/488 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + G +F A+ G DGH F QA A+GA AIV + + + Sbjct: 62 VTGDSREVVPGALFFALPGAVRDGHDFAAQAAARGAVAIVAERPVAC--------APAAL 113 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+V ++R+ +++ A+ +G+ + + VTGT+GK++V +++ + C R+ + +G Sbjct: 114 LLVPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTV-TYLVEACARA--ADLPVGVL 170 Query: 151 STISS-FAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T++ F R TTP L L+ + + G V +E SSH L Q R+ G++ A Sbjct: 171 GTVTQRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLEVSSHALAQERVGGMRFAA 230 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH AYF AK RLF E L + A++ A D Y + + G R Sbjct: 231 AGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVNARDPYGARLAAQL-GPGRR 289 Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V G + + + V T + PL G + N L AAGL +A+ Sbjct: 290 VWRYGTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSPLVGAHNLENLLCAAGLALAL 349 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI V L PGR E + + RG I+VDYAHT ++L L+ +R + R++ Sbjct: 350 GIAPDAVGRGLSASAGAPGRLERI--DGRGVSIFVDYAHTDDALGRALEALRALAPRRLL 407 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437 VFGCGGDRD+GKRP+MG++A AD+ +VT DNPR+E PE I A+++ G+ Sbjct: 408 CVFGCGGDRDRGKRPLMGEVAARGADLVVVTSDNPRTEAPEAIIADVLPGLERAGAARLS 467 Query: 438 ---------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 GF+ + +R AI A+ + + D ++VAGKGHE +V + S D + Sbjct: 468 ARAAADGARGFLVEADRRAAIALAVSLAHPGDAVLVAGKGHEDYQLVGTTKHPFS-DREE 526 Query: 489 IREILGLI 496 R+ LG + Sbjct: 527 ARKALGFV 534 >gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria meningitidis ATCC 13091] Length = 492 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103] gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103] Length = 499 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 230/465 (49%), Gaps = 23/465 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +++ DSR AG +FVAI G++ DG FIPQAIAQG A++ + D Sbjct: 24 RPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREM 83 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + P + G +G + + Q + Q + L + Sbjct: 84 HGVPVIYLAQLHQRLSALAGRFY-QQPGEKQKLIGVTGTNGKTTTTQLLAQWASL----L 138 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + + TT S + + L L +G + ++E SSHGL QHR+ Sbjct: 139 GETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRV 198 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH Q Y +AK LF E + AII ADD + + Sbjct: 199 AALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLAN 256 Query: 260 AHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A L G G+++ V N + + + L G F V N Sbjct: 257 LPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNL 316 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+G +L +L V GR E + + VDYAHT ++LE L+ Sbjct: 317 LLALATLLALGYALDDLLRVAARLQPVNGRMEVFSATGKP-TVVVDYAHTPDALEKALEA 375 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ +FGCGGDRD+GKRP+MG IA ADI +VTDDNPRSEDP+ I +I+ G Sbjct: 376 ARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSG 435 Query: 436 I--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + PG R +A+ + I D+++VAGKGHE I+ N Sbjct: 436 LLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGN 480 >gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas mendocina NK-01] Length = 487 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 248/472 (52%), Gaps = 27/472 (5%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P +NQL P I E++ DSR ++ G +F+A+ G ++DG + I AIA+GA A Sbjct: 1 MPMPLNQL--LPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAA 58 Query: 71 IVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 + + + +A++ +++ +LV V LS A R YG+ + + VTGT+GK+ Sbjct: 59 VAFEA-----EGAASMHADSAVLVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 SV+ + Q G +G + + TTP P+ + L+ L G V+ Sbjct: 114 SVSQLLAQALDLLGQPCGIVGTLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVA 173 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSHGLDQ R+ ++ FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 174 MEVSSHGLDQGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFA--WPNLRCRVI 231 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFP 305 DDA+ +E+ + H + S+ F++ + H + ++ G+ Sbjct: 232 NLDDAFGRELAAQTHESRLIGYSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGV-LRSN 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F + N L G + G+D AL +L+ L +L GR + +G + + VDYA Sbjct: 291 LLGRFNLSNLLAVVGALL--GLDYALDEILKVLPQLQGPAGRMQRLGGGDKP-LVVVDYA 347 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M +A LAD+ VTDDNPR+E Sbjct: 348 HTPDALEKVLEAMRPHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTE 407 Query: 424 DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P +I A+I G FI R +AI + DVLV+AGKGHE Sbjct: 408 EPAQIVADIRAGFAAPERVQFIH--GRGDAIARLVAQAEAADVLVLAGKGHE 457 >gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Simonsiella muelleri ATCC 29453] Length = 810 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 155/474 (32%), Positives = 229/474 (48%), Gaps = 19/474 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR IQ IF+A G DG L+I AI GA + + Q SN PI Sbjct: 26 LHADSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWAVSNQPI 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-ICQRSGLSSFQIGP 149 + ++ + A+ +Y + NI VTGT+GK+S+ ++ Q I S I Sbjct: 86 ---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKKSCAIIG 142 Query: 150 TSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T F Q+ TTP P+ + L G H+++E SSHGL Q+R++G+ Sbjct: 143 TVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNGVPFKTA 202 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAG 264 FTNL RDH+DYH + Y K RLF AII +DD + ++ +K+ + Sbjct: 203 IFTNLTRDHLDYHNSMAEYGATKARLFH--WQGLENAIINSDDEFGSKLILQLKQQYADN 260 Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S G+ + I + + A ++ + + L G F N A G Sbjct: 261 LNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAIGALC 320 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 A G + L L ++ GR + + N + VDYAHT ++LE L +R I S Sbjct: 321 ASGFEFQAALNALSQIRPATGRMDCI-INENKPLVVVDYAHTPDALEKALTTLREIQSPE 379 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFI 440 ++ VFGCGG+RD GKRP+MG +A +D IVT DNPR EDP+ I A+I+ +P + Sbjct: 380 SKLWCVFGCGGNRDSGKRPLMGAVAAQHSDRPIVTSDNPRMEDPQAIIADILPAVPNAAL 439 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + +R AI I QD++++AGKGHET V G K D ++ LG Sbjct: 440 VQVDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV-QGVKHHFSDFEVAENALG 492 >gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium papyrosolvens DSM 2782] Length = 487 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 162/479 (33%), Positives = 247/479 (51%), Gaps = 40/479 (8%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+ L+I + E +++ ++ DSR + G +FV + G DGH +I AI G + Sbjct: 3 LKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENGTK 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGK 126 A +V + + TI + D+TR L+ + +G HP N++ +TGT GK Sbjct: 63 AFLVQKHVDVPEGITTIET-------DDTRFGLAAVSDAFFG-HPSSKLNLIGITGTKGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 ++ V+ I + +G +G T+++ + L TTP L + + V Sbjct: 115 TTTTYMVKAILEAAG---HNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKV 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPK 240 +E SS GL+ HR+ G FTN RDHI H T + YFNAK +LF+ Sbjct: 172 DSAVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMC--- 228 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299 + A+I D + + K A A +VL+ G + I V ++ Sbjct: 229 -NKAVINIDSEHGR---KMAELAEGKVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGS 284 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGG 356 D L GEF +YNAL A G C I + LEH++K VPGR E V T+ Sbjct: 285 IDIETDLQGEFNIYNALAAIGSCCLI---PGITLEHVKKGLTKVTVPGRMESVKTDGNYS 341 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAHT +SLE +LK ++ GR++ +FGCGGDRD+GKRP MG+I+ ++AD I+T Sbjct: 342 -VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIIT 400 Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR+E+PE+I +I GI +I+ +R +AI+ A+E D++++AGKGHET Sbjct: 401 SDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKGHET 459 >gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Bacteroides sp. D2] Length = 482 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 255/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG + + VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ + Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNIRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis 8013] Length = 492 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 161/474 (33%), Positives = 230/474 (48%), Gaps = 28/474 (5%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR I+ G IFVA G DG +IP AIA GA + F+ N P Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDD---GKFTWNPEWNVPNQG 84 Query: 95 VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 85 IKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGN 144 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + FTN Sbjct: 145 GFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTN 204 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH T +AY K RLF K A+I DD Y E++ R C L+V Sbjct: 205 LTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPDLAVY 261 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLC 322 G H A T S +G F P L G F N L Sbjct: 262 SYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALL 316 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ I Sbjct: 317 CANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQEIKPQ 375 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439 + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ +P Sbjct: 376 GAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPE 435 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 436 CVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586] Length = 494 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 176/490 (35%), Positives = 252/490 (51%), Gaps = 33/490 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG+K DG +IPQAIAQG A+V + + D + T Sbjct: 19 ERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVAQADDATPDGTLTE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + + LS A R Y + P L + G +G + + Q + Q S Sbjct: 79 MHGVPVIYLAHLNQRLSALAGRFY-RQPSTALQLIGVTGTNGKTTTTQLLAQWSQ----A 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + + LS L QG ++E SSHGL QHR Sbjct: 134 LGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVSSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + A FTNL RDH+DYH Y AK RLF E + +I ADD + + Sbjct: 194 VEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAE--HQVGQKVINADDEVGRRWLS 251 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP-------LPGEF 310 R +A +SV + + A H + +V+ FD + L GEF Sbjct: 252 RLPDA--VAVSVAGSVDSSRARWLKATHIDYHDSGFTVQ---FDSSWGAGAINSRLMGEF 306 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L+A +++G ++E L V GR E + R + VDYAHT ++LE Sbjct: 307 NVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGR-PTVVVDYAHTPDALE 365 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L R G + VFGCGGDRD+GKRP+MG IA LAD IVTDDNPRSEDP+ I Sbjct: 366 KALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVT 425 Query: 431 EIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +I+ G+ G ++ R EA+ +A+ DV++VAGKGHE +V N E+ D Sbjct: 426 DILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGN-ERLDYSDRI 484 Query: 488 IIREILGLIL 497 + +LG+I+ Sbjct: 485 TVARLLGVIV 494 >gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 500 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 170/524 (32%), Positives = 261/524 (49%), Gaps = 56/524 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL +L++ +FPEL +L P I + SDSR IF Sbjct: 3 MKLTNLLH-EFPEL--KLGSLPSGKNPDSVPIEYIQSDSRKTNPEDIFC----------- 48 Query: 59 FIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKH 113 +P++I + ++ S L S+ I ++ +V++ + + AS L G H Sbjct: 49 -VPESIGTKKGEFISNTKASVILLHRSSNISIDSSKIVLECEEDPEQLQGRIASFLLG-H 106 Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169 P I+AVTGT+GK+S+ + + + + G IG + D TTP Sbjct: 107 PSKTLEIVAVTGTNGKTSLTNILFALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASS 166 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L L + +GVT V +EASSHGL R+ GI L AG FTNL +DH+D+H + YF + Sbjct: 167 LNLILKQMKDEGVTTVFMEASSHGLKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFES 226 Query: 230 KMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K RLFE L +SP A++ E+ ++ N + +K + I + Sbjct: 227 KFRLFEILDVSKSPFAVLDYSSPGGNELHRKIRN----------NLPDLPIKALDGIGGE 276 Query: 289 QQVT---ISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 +V+ ++++G + P L G F V N +A + +G+D + Sbjct: 277 YKVSNPFLTLQGTSYVLSLPGNRSQTISTNLLGSFNVRNTALAFLTGLGLGLDPKGMFSS 336 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 L+++ +PGRF+ V + R VDYAHT ++LE I++++R R+I +FGCGGDRD Sbjct: 337 LKEIPQIPGRFQIVYSKDRSRMAVVDYAHTPDALENIIRSVRNSRPKRLITLFGCGGDRD 396 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGF---IEKGNRIEAIRT 451 + KRP M +IA +L+D I+T DNPRSE PE I EI G PGF + + +R AI Sbjct: 397 KTKRPKMARIAEELSDQVILTSDNPRSEKPEAILDEIQSGFSPGFTPLLREVDRARAISE 456 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + +L + L+VAGKGHE I+ EK+ D + +R+ GL Sbjct: 457 GVGILPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVRKAFGL 499 >gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16] Length = 489 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 170/500 (34%), Positives = 249/500 (49%), Gaps = 57/500 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56 MKLQ L LS P W R N + DSRH+ G +F + G DG Sbjct: 1 MKLQTL-----------LSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDG 49 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114 H F QA+ +GA AIV S+ + ++R+ +++ A YG+ H Sbjct: 50 HDFAEQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHR 100 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 +++ VTGT+GK++ ++Q+ +++G + IG T I + TTP + L + Sbjct: 101 LHLIGVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRT 160 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NAK L Sbjct: 161 FKQMVDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLL 220 Query: 234 FEEL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F +L + P A++ DD S+ H +++ G + K V A Sbjct: 221 FAQLGNRYDERRPKFAVLNHDDPVSQYY---KHMTAAPIITYGIKEK----SDVMA---- 269 Query: 289 QQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 +Q+ ++ G F P L G F VYN L A C+A G A + E L + Sbjct: 270 EQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANV 329 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGRFE V + + VDYAHT +S+E LK +R + VV GCGGDRD+ KR Sbjct: 330 SPVPGRFETV-DEGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKR 388 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455 P+M + A+ AD+A+ T DNPRSEDP +I ++ G+ ++ +R EAIR AI Sbjct: 389 PLMAQAAVRYADVAVFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQ 448 Query: 456 LNKQDVLVVAGKGHETVHIV 475 + DV+++AGKGHET I+ Sbjct: 449 AQEGDVVLIAGKGHETYQII 468 >gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 495 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR + G FVAI G G F+ QA A GA A++ F Sbjct: 21 QVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71 Query: 89 NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+ V V R L + A + +G+ H ++ VTGT+GK+S + Q G Sbjct: 72 GLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L +G V++E SSH LDQ R+D Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF P A++ DD + + + + Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SR 248 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN ++++G+ PL G F V N L Sbjct: 249 DPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFAR 428 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 429 PDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463 >gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 499 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 235/468 (50%), Gaps = 38/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G +D H F+ A+ GA A++V +++ Sbjct: 29 KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH+T Y + K LF L S A++ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLSTIDKKIAVLNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVNLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431 Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF++ N ++E AI AI M + D++++AGKGHET I+ Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479 >gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia pickettii 12J] gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J] Length = 514 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 171/488 (35%), Positives = 244/488 (50%), Gaps = 38/488 (7%) Query: 32 EVSSDSRHIQAGWIFVA-IVGN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++SD+R ++ G +FVA ++GN + DG IPQAI GA A++ + A +R Sbjct: 32 DLTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVR 91 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 IL VD + A++ YG PE ++ VTGT+GK+S + ++ Q + G Sbjct: 92 ----ILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + + A TTP I L ++L+ L G +++E SSHGL+Q R+DG Sbjct: 148 AVVGTLGTGFVDALATTG-FTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGT 206 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +DH+DYH T Y AK RLF A+I DDA +++ N Sbjct: 207 RFDIAVFTNLTQDHLDYHGTMAEYELAKARLFG--WQGLRAAVINRDDAAGVRLLQ---N 261 Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311 A V ++ Y G L+ ++ T V+G G F Sbjct: 262 ARADVETIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFN 321 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L G +A G+ + LEKL V GR E G G + VDYAHT ++LE Sbjct: 322 VSNLLAVLGALLAAGVSWQDAIARLEKLQPVSGRMERFGGED-GPLVVVDYAHTPDALEQ 380 Query: 372 ILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ + IT G++ VFGCGGDRD GKRP MG IA LA ++T DNPRSEDP+ I Sbjct: 381 TLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHI 440 Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI G+ + +R AI A+ + DV+VVAGKGHE+ + G K+ D Sbjct: 441 LDEIADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSD 499 Query: 486 CDIIREIL 493 + +R L Sbjct: 500 QEHVRLAL 507 >gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Neisseria mucosa C102] Length = 492 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 163/489 (33%), Positives = 231/489 (47%), Gaps = 36/489 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L +FP L+ + + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 AIA GA + F+ P + + + + A+++YG + + Sbjct: 55 AAIANGATFVFWDDD---GKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 AII DD Y E+ R C L+V G H A T S +G Sbjct: 230 HGLQHAIINVDDGYGAELAGRLKK-DCLDLAVYSYGFSEH-----ADIRITNFTASSDGM 283 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + F P L G F N L A G VL L K+ GR + + Sbjct: 284 EAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLAVLAKIRPASGRMDCI 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407 NS + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAV 402 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466 AD +VT DNPR E+P+ I +I+ +P + +R AIR A+E D++++AG Sbjct: 403 QGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEVDRAVAIRYAVEQAAANDIILIAG 462 Query: 467 KGHETVHIV 475 KGHE V Sbjct: 463 KGHENYQDV 471 >gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 492 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L V Y F + T S +G + F P L G F N Sbjct: 258 LVV-YSYGFSEQADI----RITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAV 431 Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P + +R AIR A+E D++++AGKGHE V Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV 471 >gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9301] gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9301] Length = 511 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 144/493 (29%), Positives = 250/493 (50%), Gaps = 39/493 (7%) Query: 13 ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L+N + I P + +++IN +S +S+ +Q G +F+ + G DG F +AI GAEA Sbjct: 8 KLLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 ++ SA ++ + +++ DN + + + + + VTGT+GK+++ Sbjct: 68 IIGSAA--KEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + ++SG + G + F++ TT L K L+ +E Sbjct: 126 TFLLEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246 SSH + Q R+ G + FTNL +DH+DYH ++YF K +LF L+ K+ +++ Sbjct: 186 VSSHSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVL 245 Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVT 292 DD + S ++ KR+ ++ ++ KF C H K+++ Sbjct: 246 NHDDPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKIQ 305 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-T 351 + V PL GEF + NA+ A + + + + + PGR E + Sbjct: 306 LFV---------PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEID 356 Query: 352 NSRGGR----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 N R + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD GKRP+MG IA Sbjct: 357 NDDVARSLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAE 416 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + +D +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++ Sbjct: 417 EFSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLI 476 Query: 465 AGKGHETVHIVTN 477 AGKGHE I+ + Sbjct: 477 AGKGHEDYQILND 489 >gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fluviicola taffensis DSM 16823] Length = 486 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 155/481 (32%), Positives = 245/481 (50%), Gaps = 31/481 (6%) Query: 24 QW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 QW + ++ + SDSR AG +F+A+ G + D H FI Q I +G IV + Sbjct: 15 QWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEKGCRVIVAERVIEVP 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + + +LVV N+ L A Y +P L + G +G + + + Sbjct: 75 E-------HVTVLVVPNSALALGELAHAFY-DYPSRSLELVGVTGTNGKTTTTTLLHDLY 126 Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +++G ST+ + + TTP I L L+ + QG +H +E SSH + Q Sbjct: 127 TELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSHCFMEVSSHAISQ 186 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+ G+ G+FTN+ DH+DYH T + Y AK F+E L K++ A++ ADD K Sbjct: 187 HRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDE-LKKDAFALVNADD---KNG 242 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M N +V + G + KV ++ + +++ G + L G+F YN Sbjct: 243 MVMVQNTKAKVSTFGLKTHADFKAKVLE-NSFSGLLLTING--IELWTRLIGDFNAYNIA 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G+ +G DS VL L KL V GRF+F + + + VDYAHT ++LE +LK I Sbjct: 300 TVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSETDITAV-VDYAHTPDALENVLKTI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I + ++I V GCGGDRD KRP M +IA +L++ I+T DNPR+EDP +I ++ Sbjct: 359 ENIRTRNEQVITVVGCGGDRDALKRPEMARIACELSNKVILTSDNPRTEDPAEILKQMEA 418 Query: 435 GIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ + +R +AI+TA+ + +D++++AGKGHE + NG K D D++ Sbjct: 419 GVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKGHEKYQDI-NGVKHPFDDFDVV 477 Query: 490 R 490 + Sbjct: 478 K 478 >gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium kroppenstedtii DSM 44385] Length = 526 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 153/470 (32%), Positives = 228/470 (48%), Gaps = 56/470 (11%) Query: 55 DGHLF--IPQAIAQGAE-AIVVSSAYSLQDFSAT---IRSNTPILVVDNTRKFLSLFASR 108 +G LF +P GA+ A S+A L D R + PI+VVD+ R L +S Sbjct: 37 EGGLFAGVPGLHVHGAQFADSSSAAAVLTDHDGVEKVTREDLPIIVVDDVRAVLGEVSSA 96 Query: 109 LYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTT 164 +Y HP ++ +TGT+GK++ + V+ G+S+ IG T T I+ + LTT Sbjct: 97 VY-DHPSRDLTVIGITGTAGKTTTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTT 155 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 P L + + +GVTHV +E SSH + R+ G FTNL +DH+D+H T + Sbjct: 156 PEAPNLQALFAMMKKRGVTHVVMEVSSHAIALGRVLGTHFSVAGFTNLSQDHLDFHPTME 215 Query: 225 AYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV- 282 YF K RLF+E P + +++ DDA+ + + + +V + H + Sbjct: 216 DYFQTKARLFKEDSPLHAETSVVCIDDAWGQRLATMLPHP----FTVSTEAASEHDASLQ 271 Query: 283 -------CAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + T + G + P+PG F V NA++A GL + G+ + Sbjct: 272 PDVWAGPSSVMDNGVQTAELYGFGANEMTLHIPMPGRFNVANAMLAMGLLVKTGMKAEDA 331 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 +E L + VPGR E + + VDYAH ++ +L +R GRI +V G GG Sbjct: 332 IEGLSTV-TVPGRLERIDCG-QDFMAVVDYAHKPGAIAAVLDTLRAHVRGRIAIVVGAGG 389 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------------- 436 DRD KRPIMG+ A +D+ IVTDDNPRSEDP IR +++ G Sbjct: 390 DRDHSKRPIMGREAALRSDLVIVTDDNPRSEDPASIRQQVVAGAKEVADHVDVDRADEPR 449 Query: 437 -----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P E G+R EAIR AI+ D ++VAGKGHET ++ Sbjct: 450 NKVKTEGSEHRPTIREIGDRREAIRAAIQWTQPGDAVIVAGKGHETGQLI 499 >gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0205] Length = 503 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 240/478 (50%), Gaps = 35/478 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR + G +FV + G DG F P+A+ GA V+ S + + Sbjct: 25 VQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAALAVIGR--SAAEARPPADGD 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V D ++ L A+ + + + ++ VTGT+GK++ ++ + G + Sbjct: 83 AVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGKTTTTYLLEHLASACGYPAALF 142 Query: 148 G------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G P +I++ + TT L L+ + G ++E SSH LDQ R+ G Sbjct: 143 GTLINRWPGHSITA-----QHTTAFADELQAQLALAAESGARIAAMEVSSHALDQQRISG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + FTNL +DH+DYH + +AYF AK +LF LL E+ A++ DD + K++ +R Sbjct: 198 CRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARAVVNVDDPWGKQLAERL 257 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNAL 316 G R + ++ A+ Q I+ G+ F PL G+F + N L Sbjct: 258 ---GDRCWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGA-FSSPLLGKFNLMNLL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT------NSRGGRIYVDYAHTSNSLE 370 A G+ + G+ +LE L VPGR E V ++ + VDYAHT + LE Sbjct: 314 EAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAVLVDYAHTPDGLE 373 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 LK R G++I VFGCGGDRD+ KRP M IA LAD +VT DNPR+EDPE+I Sbjct: 374 SALKACRPFVEGQLICVFGCGGDRDRTKRPQMAAIAARLADQVLVTSDNPRTEDPEQILK 433 Query: 431 EIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ GIP +R ++I AI M +D++++AGKGHE I+ G KK+ D Sbjct: 434 DVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKGHEDYQIL--GTKKVHFD 489 >gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945] gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae 1291] gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae] Length = 492 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+ GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDV-QGVKHRFSDLEIVGQAL 488 >gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus AH820] Length = 493 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 148/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L + A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDLSTTDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVALVEGIPLTNISDSLSTLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAITKDIEKG 427 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++E AI AI M + D++++AGKGHET I+ Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472 >gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima CS-328] Length = 498 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 170/499 (34%), Positives = 249/499 (49%), Gaps = 29/499 (5%) Query: 1 MKLQDLIYKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL+DL+ + PE L + +I ++++S + G +F+ + G + DG Sbjct: 1 MKLKDLLNPNLLPPEYHPALDM--------EITGLATNSHACKPGDLFLGMPGTRVDGGD 52 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENI 117 F P AIA GA A +VS + + T P ++ + + A+ Y HP Sbjct: 53 FWPSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTTACAEIATAFY-NHPAQT 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------FAQDNRLTTPSPIYL 170 L + G +G + + I L S PT+ + + F + TTP + L Sbjct: 112 LKLVGVTGTNGKTTTTHLI---EFLLSNLDQPTALLGTLYTRWPGFQEVAVHTTPFAVEL 168 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L+ G +E SSH L Q R+ G FTNL +DH+DYH T YF AK Sbjct: 169 QHQLADAVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPTMDDYFEAK 228 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 LF + + AII ADD Y K++M R + SV I + + Sbjct: 229 ALLFSDDY-LQGKAIINADDDYGKKLMARLGSDRFWSYSVSDPSADIWADSLVYQPTGIK 287 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + F PL G++ + N L A G +A+G+D + +++ L VPGR E V Sbjct: 288 GVLHTPMGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVQ 347 Query: 351 TNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA DL Sbjct: 348 LSPEQDITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADL 407 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAG 466 +D+A+VT DNPR+EDP++I +I+ GIP ++ G+R +AIRTAI+ D +++AG Sbjct: 408 SDLAVVTSDNPRTEDPDRILQDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAG 467 Query: 467 KGHETVHIVTNGEKKMSVD 485 KGHE I+ G +K+ D Sbjct: 468 KGHEDYQII--GTEKVHFD 484 >gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacteroides sp. 3_1_23] Length = 482 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG + + VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 4342] Length = 499 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 233/468 (49%), Gaps = 38/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 29 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + L G F VYNA Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQIEVSLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431 Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF++ N ++E AI AI M + D++++AGKGHET I+ Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479 >gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gordonia neofelifaecis NRRL B-59395] Length = 689 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 231/460 (50%), Gaps = 20/460 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R ++ + ++ AG++F A+ G++ G + QA A GA ++ A Sbjct: 39 DRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAAGVLTDPAGLALIREDPE 98 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ +LV R+ L ++R+YG ++ +TGTSGK++ A + + +G Sbjct: 99 AADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALRAAGRVV 158 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + + LTTP L + + ++ +GV V +E SSH L R+DG Sbjct: 159 GLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALGRVDGCH 218 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHN 262 G FTNL +DH+DYH+T YF AK RLFE P + A + DD + + A Sbjct: 219 FAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRAADVAAQ 278 Query: 263 AGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAA 319 ++V G + ++ V Q V I+ +G + + PLPG + V NAL+A Sbjct: 279 GAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVANALLAV 338 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377 + +A G D + L + VPGR E V RG VDYAH ++E +L + Sbjct: 339 AMTVAAGTDVDTAVAGLAHV-AVPGRLEKV---ERGQEFLAVVDYAHKPAAVEAVLATLG 394 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-- 435 T GR+ VV G GGDRD KRP+MG A AD+ IVTDDNPRSE P IRA ++ G Sbjct: 395 AQTRGRLAVVLGAGGDRDTEKRPLMGAAAARGADLVIVTDDNPRSEPPADIRAAVLAGAR 454 Query: 436 ----IPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G I E G+R +AI A++ DV+++AGKGHE Sbjct: 455 SVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAGKGHE 494 >gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 492 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 149/468 (31%), Positives = 235/468 (50%), Gaps = 38/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P +VV + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIVVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L + A++ ADD S E Sbjct: 192 CNFKIAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + + K + + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I ++G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I Sbjct: 368 ISEFSTGKVITVFGCGGDRDTKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 424 Query: 436 IPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF++ N ++E AI AI M + D++++AGKGHET I+ Sbjct: 425 EKGFLQNNNLNYKVEVDRELAITHAINMASSNDIVLIAGKGHETYQIL 472 >gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens NRL30031/H210] Length = 492 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 167/507 (32%), Positives = 237/507 (46%), Gaps = 37/507 (7%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L DFP P+ + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETDFP---------PLPCENAAGRLLHSDSRQIKQGDIFVACPGEYADGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119 A+A GA I F+ P + + + + A+++YG + + Sbjct: 55 AAVANGAAFIFWDDD---GKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALKETTHTTPAPVDVQTLLYRFR 171 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYGAIKSRLF--YW 229 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+I DD Y E++ R C L+V G H A T S +G Sbjct: 230 QGLQHAVINIDDGYGAELVCRLKK-DCPDLAVYSYGFSEHADIRIA-----DFTASSDGI 283 Query: 299 DFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F P L G F N L A G VL+ L K+ GR + + Sbjct: 284 AAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLGKICPASGRMDCI 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIAL 407 NS + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ Sbjct: 344 -MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGTALWCVFGCGGNRDRGKRPLMGAAAV 402 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + AD ++T DNPR E+P+ I +I+ +P + +R AIR A+E D++++AG Sbjct: 403 EGADKVVITSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAG 462 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KGHE V G K D +I + L Sbjct: 463 KGHENYQDV-QGVKHHFSDFEIAEKAL 488 >gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacteroides ovatus SD CMC 3f] Length = 482 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG + + VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 495 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 154/448 (34%), Positives = 222/448 (49%), Gaps = 25/448 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI--- 92 DSR + G FVAI G G F+ QA A GA A++ F + P+ Sbjct: 28 DSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVL---------FEPPAPNGMPVPAD 78 Query: 93 -LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V R L + A + +G+ H ++ VTGT+GK+S + Q G + +G Sbjct: 79 AIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLGT 138 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + A TTP + L+ L +G V++E SSH LDQ R+D + Sbjct: 139 LGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVAV 198 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH Y AK +LF K A++ DDA+ + + A R + Sbjct: 199 FTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDAFGRTLFASLDPA-LRAI 255 Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + + + + + HN ++++G+ PL G F V N L AG A+ Sbjct: 256 GVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALWAL 315 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 I A + L +L + GR +G + VDYAHT ++LE L ++R+ R+I Sbjct: 316 EIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDRLI 375 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEK 442 VFGCGG+RD GKRP M IA AD+AIVTDDNPRSED + I A+I+ G I + Sbjct: 376 CVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAIVQ 435 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AI AI M + D++++AGKGHE Sbjct: 436 RDRAAAIHQAIGMASASDIVLIAGKGHE 463 >gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis N1568] Length = 492 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVCRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + I T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEQADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9211] gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9211] Length = 505 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 158/496 (31%), Positives = 250/496 (50%), Gaps = 57/496 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P+ ++ +I +SSDSR ++ G +F + G K++G F +A GA A VV S +D Sbjct: 17 PIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGAVAAVVGD--SARD 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQ 138 + N ++V D +++ AS +GK P +A+ G +G + + ++ + + Sbjct: 75 CIPHDKKNLVVVVPDPVSQWMGEIASVFWGK-PSLEMALIGVTGTNGKTTTTHLIEHLSK 133 Query: 139 RSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 SG ++ +G + +++ + TT L LS + + G + ++E SSH L Q Sbjct: 134 SSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCAMEVSSHALSQR 193 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKE 255 R+ G+ FTNL +DH+DYH++ +AYF AK LF+ L K ++ A++ DD + Sbjct: 194 RVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQARAVVNIDDQWGFR 253 Query: 256 VMKRAHN---------------------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + KR G ++ + G +G FIH T Sbjct: 254 LAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEG-FIH-------------TPF 299 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 EG F+ PL G F + N L + G+ + G +L VPGR E V + Sbjct: 300 GEGP---FMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVK 356 Query: 355 GGR-----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + VDYAHT + L+ LK +R SG++I VFGCGGDRD+ KR MG+IA ++ Sbjct: 357 SDSLPMPIVLVDYAHTPDGLKNALKAVRPFVSGKLICVFGCGGDRDKSKRSYMGEIAAEI 416 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466 +DI IVT DNPR+EDP I +I+ GIP E + +R +AI +I D++++AG Sbjct: 417 SDIVIVTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAG 476 Query: 467 KGHETVHIVTNGEKKM 482 KGHE I+ G+KK+ Sbjct: 477 KGHEDYQIL--GDKKI 490 >gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paludibacter propionicigenes WB4] Length = 481 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 153/466 (32%), Positives = 241/466 (51%), Gaps = 56/466 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++A +FVA G DGH +I AI GA AIV ++ + I N + V Sbjct: 29 DSRKVEAENVFVATRGTASDGHQYIATAIENGAVAIVC------EELPSEINPNITYVKV 82 Query: 96 DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +++ L AS Y ++ VTGT+GK+++A+ + Q+ + G S G ST+ Sbjct: 83 EDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIATLLYQLFRELGHKS---GLLSTV 139 Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ D + TTP + L L+ + G + +E SSH +DQHR+ G++ F Sbjct: 140 CNYVNDLAVEATHTTPDALALNALLAQMVDAGCEYAFMEVSSHSIDQHRISGLEFDGAIF 199 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-------- 261 TN+ RDHIDYH T + Y AK + F+ L ++ A+ ADD +++ + Sbjct: 200 TNITRDHIDYHLTFENYLKAKKQFFDN-LSTDAFALTNADDKNGLVMLQNSKAKKYTYSL 258 Query: 262 ----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + R+L G++G + + N ++V +S GK F N Sbjct: 259 RGMADFKTRILEHGFEGMLLDM-------NDKEVNVSFIGK-----------FNASNLSA 300 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G + +G D VL + LH V GRFE + + + G VDYAHT ++L ++ I Sbjct: 301 VFGAAVLLGQDELEVLRIISSLHSVSGRFETLHSPA-GYTAIVDYAHTPDALVNVIGTIN 359 Query: 378 TIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I +GR+I V GCGG+RD+GKRP+M + A++ + AI+T DNPR E+P++I +++ G Sbjct: 360 QILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWKAILTSDNPRFEEPQEILNDMLAG 419 Query: 436 IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + +EK +R EAI+TA + DV++VAGKGHE I+ Sbjct: 420 LD-VVEKAKSLTIVDRREAIKTACALAQAGDVVLVAGKGHEDYQII 464 >gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-tripeptide synthetase); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match, murE/murF-like) [Candidatus Cloacamonas acidaminovorans] Length = 956 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 145/446 (32%), Positives = 229/446 (51%), Gaps = 18/446 (4%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V +D+R I+ G IFV I G DGH FI A+ +GA AI+V + +D P Sbjct: 37 KVQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGA-AIIVCREINKRDI--------P 87 Query: 92 ILVVDNTRKFLSLFASR--LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + V +TRK ++ A L K P ++ +TGT+GK++ + + + + G IG Sbjct: 88 YIKVKDTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGT 147 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I A + TTP I L + + V +V +E SSH L R+ G+K Sbjct: 148 LGYYIEGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRIYGVKFDYCL 207 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 F+NLGRDH+D+HQT + Y AKM FE+ S ++I DA+ ++ +V Sbjct: 208 FSNLGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVY 267 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 S+G + N + E + L G F + N + A+G Sbjct: 268 SLGGNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFS 327 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L+ + V GR E V N G I++DYAHT +++ +LK + + RI+ + Sbjct: 328 PEAIHNSLKDIPPVQGRLERVENNFNIG-IFIDYAHTPEAIDNVLKAVEDLPHKRILCLI 386 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG----IPGFIEKGN 444 G GGDRD+GKRP+M K AL+ +D+ I++DDNPRSE+PE+I +I+ +P +I + N Sbjct: 387 GAGGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFLPWWIIR-N 445 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470 R +AI + I + ++D++++ GKG E Sbjct: 446 RQQAISSIIRLAQEEDIVLICGKGSE 471 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 19/209 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N +S DSR I+ G +F+AI G K DGH ++ + + Y L FS Sbjct: 537 NYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFS----EEN 592 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V+N + + L + P +A+TG++GK++ + Q+ Q S Sbjct: 593 SYYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSA--------- 643 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGSF 209 + + A +N + I L K + + + + ++H G D G Sbjct: 644 PVLKTLANENNI-----IGLCKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGII 698 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 N+G H++Y ++ F K+ LF+ L Sbjct: 699 LNIGPSHLEYFGDEEGVFREKITLFKRPL 727 >gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1] Length = 499 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 160/494 (32%), Positives = 242/494 (48%), Gaps = 49/494 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ + DSR + G +F A+ G + DG FI +A+ +GA AIV Q A Sbjct: 22 DRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVT------QKMPAHP 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC---QRS 140 ++ V + R L+ A R Y K P+ ++ VTGT+GK++V ++ QR Sbjct: 76 PGKVTVIQVADARATLARVAQRYY-KFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV 134 Query: 141 GLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 GL ++ +G T+ ++ TTP + + ++ + G +E SSHG+DQ Sbjct: 135 GLLGTINYDLG-ARTVPAYR-----TTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQ 188 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSK 254 R+ G++ A FTNL RDH+DYH+T AYF K RLF PK A++ DD Y Sbjct: 189 RVAGLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKV--AVVNFDDPYGV 246 Query: 255 EV---MKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + +KR H + V L + + +HL + G + PL Sbjct: 247 TLAASLKREHQSAKLVTFGENLQADVRAENVHLN-----FTNSTFRLVWPGGTMEIESPL 301 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G + V N L A +G D + L L VPGR E + + + VDYAHT Sbjct: 302 IGRYNVSNLLAAIAAAWGLGRDPFVFLARLRAFKGVPGRMERI-DEGQPYNVLVDYAHTD 360 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L L +R IT GR+ VVFGCGG+RD+ KRP+M K + AD A T DNPR+E Sbjct: 361 DALRNALGMLRAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLP 420 Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I ++ G+ +IE +R AI A++ D L++AGKGHE+ + Sbjct: 421 QIFDDMKAGVLAPEKITWIE--DRRRAISLALDAAKAGDCLLIAGKGHESYQEFADTVIP 478 Query: 482 MSVDCDIIREILGL 495 D ++RE++G+ Sbjct: 479 FD-DRQVVRELIGI 491 >gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase [Hippea maritima DSM 10411] Length = 459 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 238/469 (50%), Gaps = 37/469 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G++F AI G K D + F+P +A+ +VVS F + + V Sbjct: 18 DSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSE----NGFD-----DERCIKV 68 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI----GPTS 151 D+ RK + L A + HP L V G +G + + + RS + +I G T Sbjct: 69 DDVRKCMGLAADHFFN-HPSKKLKVVGITGTNGKTTTTYLL--RSIFDNSEIIGTTGWTL 125 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 F +N TTP + L + L+ ++ + E SSH L +R++G+ FTN Sbjct: 126 KDERFKLNN--TTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTN 183 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + +DH+D++ + Y K+ FE L PK ++ ADD+Y + ++ A +S G Sbjct: 184 ISQDHLDFYDNLENYAKTKLSFFERLKPK----VVNADDSYGRMLIDAA------TISYG 233 Query: 272 YQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + F +K + ++ + ++V + PL G++ +YN + A G+ + G+D Sbjct: 234 FS-DFAFIKPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDF 292 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 A + E + K PGR EF + G VDYAHT +++ +L+ + I GRII VFG Sbjct: 293 ARIEEGIAKSKGAPGRLEFFQKD--GAYAVVDYAHTDDAMRNVLEALNKIKKGRIITVFG 350 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446 GGDRD+ KRP MG IA L+D+ +VT DNPRSE+P I +I+ GI I + +R Sbjct: 351 AGGDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPDRF 410 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 EAI+ A+ M K D++ + GKGHE I+ + D +++R + L Sbjct: 411 EAIKKALGMAEKGDLVTILGKGHEDYQILKDKTIHFD-DREVVRRLWNL 458 >gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter sp. 1501(2011)] Length = 577 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 143/432 (33%), Positives = 226/432 (52%), Gaps = 55/432 (12%) Query: 91 PILVVDNTRKFL------SLF----------ASRLYGKHPENILAVTGTSGKSSVASFVQ 134 PI+ V N R L SL +S L + P+ ++AVTGT+GK++++ + Sbjct: 123 PIIFVANLRDILGSLIQISLLPPASLSSLTHSSDLQQQLPQ-VIAVTGTNGKTTISQLIA 181 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVS 186 Q+CQ S ++ Q S + A + RL TT + + + L + +GV+ ++ Sbjct: 182 QLCQFSNVAQLQ---NSAVMGTAGNGRLDSLVQASHTTGDALAVQRFLRQMHDEGVSILA 238 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAI 245 +EASSHGLDQ RL + + +TNL RDH+DYH + Y AK RLF+ P+ + A+ Sbjct: 239 LEASSHGLDQQRLQAVLVTVAVYTNLSRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAV 298 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNK-----QQVTISVE 296 I ADD ++ + + A +G +V + + + ++ + NK + V I VE Sbjct: 299 INADDEFASLMAETARRSGAKVWLYSLRSEQGTINEIANDAYFVANKIEPSLEGVKIEVE 358 Query: 297 GKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + PL G F V N L A +A+GI+ + + KL GR + V N+ Sbjct: 359 TSFGPLILHSPLLGRFNVANLLAAVAGVMALGIELEDLPALVTKLQGASGRMQRVNVNND 418 Query: 355 G----------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 G VDYAHT ++L +L ++++ SG + +FGCGGDRD+GKRP+M + Sbjct: 419 AIDDQGTVLNQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGCGGDRDKGKRPLMAQ 478 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQ 459 L +AD ++T DNPRSEDP +I ++ G+ + +R +AI+ A+E Q Sbjct: 479 AGLAVADKVVLTSDNPRSEDPAQILEDMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQ 538 Query: 460 DVLVVAGKGHET 471 D++V+AGKGHET Sbjct: 539 DIVVIAGKGHET 550 >gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 492 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 153/484 (31%), Positives = 252/484 (52%), Gaps = 32/484 (6%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P ++ + I ++D+R ++ G +F AI G G + A+A GA A++ + D Sbjct: 20 PAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDT-----D 74 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR 139 + + ++ P++++ + + + A+ +YG + + AVTGT+GK++ A + I Sbjct: 75 GADFVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDHILNT 134 Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G ++ IG + I+ +LTTP P L L+ L +G T + +E SSH + Q R Sbjct: 135 LGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAIAQGR 194 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ I FTNL +DH+DYH T YF AK LF E + AI D + +E++K Sbjct: 195 IESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAIT--DTPWGEELVK 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNA 315 R + RV ++ Q + + T+++ G+++ + LPG+F + NA Sbjct: 253 RGNE---RVAALASQPDQPAGWRFT---GQADGTLTLRGENWGTITTSTNLPGDFNIANA 306 Query: 316 -----LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +VA A I +AL+ + V PGR E V + RI VD+AH ++L Sbjct: 307 ALAIAMVAKAGYSAEAISAALLASNGVNPQV-PGRMEVV---AEAPRIVVDFAHNEDALT 362 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 ++ +R T G +IV+ G GDRD KRP+M K + AD+ ++TDD+P SEDP IRA Sbjct: 363 KAIEALRPSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPHSEDPAHIRA 422 Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 ++I GIP +IE +R EAI + +D +++AG+GHET+ + NG D + Sbjct: 423 DLIAGIPTDTNWIEIADRREAITAMVTDACAEDTILIAGRGHETIQDM-NGTLVNLDDRE 481 Query: 488 IIRE 491 + RE Sbjct: 482 VARE 485 >gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483] Length = 482 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 43/484 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ DSR ++AG +F+A+ G + DGH +IP AIA+GA AI+ +D + Sbjct: 22 EITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAIAILC------EDMPEEPVA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V ++ + A+ YG + + VTGT+GK+++A+ + + G ++ Sbjct: 76 GITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIATLLYNTFRYFG---YK 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G ST+ ++ D + TTP PI L L ++ +G +V +E SSH + Q R+ G+ Sbjct: 133 VGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVSSHSIAQKRISGL 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMK 258 K G FTNL RDH+DYH+T + Y AK + F++ LPK + ++ DD ++ Sbjct: 193 KFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD-LPKNAFSLTNLDDKNGLVMTQNTRS 251 Query: 259 RAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + R LS ++G+ + H + + N ++ + GK F N L Sbjct: 252 KVYTYSLRSLS-DFKGRVLESHFEGMLLDFNNHELAVQFIGK-----------FNASNLL 299 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 G + +G VL L LH V GRF+ V + +G VDYAHT ++L +L I Sbjct: 300 AVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAV-RSPQGITAIVDYAHTPDALINVLNAI 358 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I V G GG+RD+GKRPIM K A +D I+T DNPR E+P+ I +++ Sbjct: 359 HGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQDIINDMLA 418 Query: 435 GIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ K +R EAIRTA + K DV++VAGKGHE + G K D +++ Sbjct: 419 GLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEI-KGVKHHFDDKEVL 477 Query: 490 REIL 493 +EI Sbjct: 478 KEIF 481 >gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 516 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 172/502 (34%), Positives = 253/502 (50%), Gaps = 52/502 (10%) Query: 32 EVSSDSRHIQAGWIFVAIV---GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +V +DSR IQ+G IF A GN DG FI A+ GA A+V + L+D + + Sbjct: 25 KVCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVV----FDLKDMDSQLT 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V N S+ YG HP NI+ VTGT+GK+S+ ++ Q S + Sbjct: 81 DHPQCFAVKNLAAQAGQLCSQWYG-HPSKELNIIGVTGTNGKTSITQWLAQALDASNHRT 139 Query: 145 FQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T + Q TTP L L+ L + G V++E SSH L Q R+ G Sbjct: 140 AVLGTLGTGFPGALVQTG-YTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGT 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAH 261 + +FTNL +DH+DYH + Y AK +LF++ K A+I DDA+ +E+ M Sbjct: 199 DIQCAAFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKH--AVINLDDAFGRELAMNLLA 256 Query: 262 NAGCRVLSV--------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------- 304 G +V + G++ L+++ A ++ T+S G D F++ Sbjct: 257 KDGMKVWAYALSPSAFEGFEKFGDRLQRIYA----KETTLSGAGYDSIFVYGKVGSAQLH 312 Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIY-- 359 PL GEF V NAL ++ G+ + + + +L+ V GR E + G + G + Sbjct: 313 IPLLGEFNVSNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAV 372 Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++LE L+ +R + G+I VFGCGGDRD GKR +MG +A AD ++T Sbjct: 373 VDYAHTPDALEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKRALMGAVAERNADHILIT 432 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSEDP+ I I GI + +R AI AI + +D+++VAGKGHET Sbjct: 433 SDNPRSEDPQAIMQMIRGGIQAESQNIQMIADRAAAIMAAIRHADARDIVLVAGKGHETT 492 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + NG+K D + IR G Sbjct: 493 QEI-NGKKFDFSDQEHIRLAAG 513 >gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter radioresistens SH164] Length = 499 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 246/482 (51%), Gaps = 57/482 (11%) Query: 20 IFP----MQWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVV 73 I+P ++W + + DSR +QAG IF+A+ + + +F A++QGA I+ Sbjct: 8 IYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSHSNKTRIFAENALSQGALGIIS 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSV 129 S + T V R+++ + + L P N ILAVTGT+GK+++ Sbjct: 68 ESDLGV----------TTAWVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTI 117 Query: 130 A-------SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + SF +Q C G + I P S+ TT + L AL SSQG Sbjct: 118 SRLIAELISFQKQPCAVMGTTGNGILPHLVASTH------TTLDALQLQNALHDFSSQGA 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V++EASSHGL+Q RLDG ++ ++NL RDH+DYH T AY +AK LF+ Sbjct: 172 NFVALEASSHGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFK--FATLR 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I DD Y+ +++ A R + Y L+ A + + S+EG F Sbjct: 230 SAVINLDDDYAPVMLETAQANPARPKILTYS-----LQHPEADYRVSDIHYSLEGAKFKL 284 Query: 303 LFP---------LPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P L G+F + N LVA+ + + G + +L + +L PGR + + Sbjct: 285 IAPTGEYVVQSPLLGQFNIEN-LVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDV 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 R VDYAHT ++L +L ++ ++ +FGCGGDRD+GKRP+M + AL+ AD Sbjct: 344 ER--LFVVDYAHTPDALTQVLVTLKRHVQNQLWAIFGCGGDRDRGKRPLMTQAALNDADP 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T DNPR+E PE+I A++ +G+ E +R EAI+ A++ D++V+AGKG Sbjct: 402 VILTSDNPRTESPEQIFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461 Query: 469 HE 470 HE Sbjct: 462 HE 463 >gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pelobacter propionicus DSM 2379] Length = 536 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 166/495 (33%), Positives = 243/495 (49%), Gaps = 73/495 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ DSR I +F A+ G DGH FIP A+ + A L+D S + Sbjct: 45 EIKALTCDSRGIVPDSLFFALRGAAMDGHDFIPAAVQA------GAVAVVLEDESRAP-A 97 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 P + V + R ++ A+ +G +P + L + G +G + + ++ I + +G+ + Sbjct: 98 AIPWVRVRDGRSAMAWMAAEFHG-NPTSRLPLIGITGTNGKTTTTYLIEAILRAAGIPAA 156 Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +G TIS D +T TP L A + L++ G +E SSH L+Q R+DG Sbjct: 157 VLG---TISYRFGDTVITASHTTPESTELQAAFTQLAAAGAKAFVMEVSSHALEQKRVDG 213 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 G F+NL RDH+DYH T ++Y AK+RLF ELL + A I DD V Sbjct: 214 CHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPLRRAAINMDDEQGATV 273 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFP---------L 306 RA C V+ G +C + +++++SV+G + P L Sbjct: 274 AARA---ACPVIGYG----------ICRGDVRAEELSLSVDGIRARLVTPKGSIDVSSRL 320 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F + N L A IA+ + + +E VPGR E V N G + VDYAHT Sbjct: 321 LGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERV-DNRCGITLLVDYAHTG 379 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE +L ++ + GRII VFGCGGDRD GKRPIMG+IA ++D+AIVT DNPR+EDP Sbjct: 380 DALENVLTTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDLAIVTSDNPRTEDPF 439 Query: 427 KIRAEIIHGI--------------------------PGFIEKGNRIEAIRTAIEMLNKQD 460 I +I GI GF+ NR EAI A+ + D Sbjct: 440 SILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRREAISLAVRLARPGD 499 Query: 461 VLVVAGKGHETVHIV 475 ++++AGKGHE I+ Sbjct: 500 IVLLAGKGHEDYQII 514 >gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus clausii KSM-K16] Length = 488 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 155/467 (33%), Positives = 244/467 (52%), Gaps = 35/467 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++++S+ ++ G +F+AI G DGH FI QAIA GA+A++ Q + Sbjct: 23 ITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAKAVIGEKEIGKQ--------S 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V ++RK L+L A R Y K+ +N ++ +TGT+GK++ + ++ I + G + Sbjct: 75 VPYIKVTDSRKALALAAKRFY-KNEQNKAIMIGITGTNGKTTTSYMLKHILETCGHTCSL 133 Query: 147 IGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G I + A N TT + L K L+ + Q V +E +SH L QHR+ GI Sbjct: 134 FGSVQNIVNGQVLPATTN--TTMDALELQKQLAASNDQVVI---MEVTSHALMQHRVYGI 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL +DH+DYH + +AYF AK+RLFE+L P A+I A + + + Sbjct: 189 EFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPA-GKAVIQAQGEWGEAFLASLKQ 247 Query: 263 AGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + ++G + L V I Q T++ + K +D PL GE VYNA +A Sbjct: 248 RDVPYIYTLGGAEATLQLSNV-RIERPMQATLAEDHKAYDLKVPLLGEHNVYNAAIAFLT 306 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +G+++ +L LEK VPGRFE + + +G I +DYAHT ++ LK +++ Sbjct: 307 ARLLGLNARKILAALEKFPGVPGRFELI-HHPKGANIVIDYAHTEDAFYHCLKTAEELSA 365 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 RII VFG G+RD KR M ++ +D I+T D+ E E++R ++ + G E Sbjct: 366 RRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILTMDDLNGESFERMRKKLENYQLG--E 423 Query: 442 KG----NRIEAIRTAIEMLNKQDVLVVAGKGHE----TVHIVTNGEK 480 G +R AI A E+ D + + GKGHE + H+ T +K Sbjct: 424 NGVVIPDRTSAIAHAWELAENGDWVFITGKGHEAYRQSYHLPTQSDK 470 >gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR + G FVAI G G F+ QA A GA A++ F Sbjct: 21 QVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71 Query: 89 NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+ V V R L + A + +G+ H ++ VTGT+GK+S + Q G Sbjct: 72 GLPVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L +G V++E SSH LDQ R+D Sbjct: 132 PTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF P A++ DD + + + + Sbjct: 192 VHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTR--PGLKAAVVNLDDGFGRTLFA-SR 248 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN ++++G+ PL G F V N L Sbjct: 249 DPVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAV 308 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 309 AGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFAR 428 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 429 PDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463 >gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis M01-240355] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M6190] gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis ES14902] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica ST-640] gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica 020-06] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 223/460 (48%), Gaps = 35/460 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLF--YWHGLQHAVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEQADI----RITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P + +R AIR A+E D++++AGKGHE V Sbjct: 432 PNPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDV 471 >gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Citrobacter rodentium ICC168] Length = 495 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/468 (34%), Positives = 236/468 (50%), Gaps = 33/468 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR +G +FVA+ G++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y + EN+ V T + + Q + Q S L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTG-TNGKTTTTQLLAQWSQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT S + + L+ L +QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFGAMEVSSHGLIQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK LF AI+ ADD + + Sbjct: 195 AALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFST--HHYGQAIVNADDEVGRRWLTN 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVY 313 +A + + G++ LK V ++ TI + + + L G F V Sbjct: 253 LPDAVAVSMEDHINPNCHGRW--LKAVAVDYHDSGATIRFTSSWGEGEIESRLMGAFNVS 310 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L+A +A+G A +L+ +L V GR E + + VDYAHT ++LE L Sbjct: 311 NLLLALATLLALGYPLADLLKTATRLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKAL 369 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R G++ VFGCGGDRD+GKRP+MG IA AD+ +VTDDNPR+E+P I +I Sbjct: 370 QAARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYADVVVVTDDNPRTEEPRAIIDDI- 428 Query: 434 HGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G ++ G R EA+ AI + DV++VAGKGHE I+ Sbjct: 429 --LAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKGHEDYQII 474 >gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 529 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/470 (32%), Positives = 240/470 (51%), Gaps = 31/470 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P +I +V DSR + G ++V + G + G F QA A GA A++ + + Sbjct: 35 LPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHGANFAAQAAALGAVALLTDA----E 90 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ 138 + PI+V + R ++ A+R++G ++L +TGT+GK++ A ++ Sbjct: 91 GAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCAFLIEGALI 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +G ++G TI + L TTP L + + G + +E SS Sbjct: 151 AAG---HRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIVMEVSS 207 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H L R++G+ +FTNLGRDH+D+H+TQ+AYF AK +LF + S A+I DD Sbjct: 208 HALALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRPTM--TSRAVINGDDP 265 Query: 252 YSKEVMKRAHNAGC-RVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + + +++RA AG V++ G+ + + L I + + ++ G+ F LPG Sbjct: 266 WGRILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAFDIALPG 325 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 ++ V NA + G++ + LEK +VPGR + V R+YVD+AHT + Sbjct: 326 QYNVANAATTIAVLAQAGVNLDRAVPGLEKA-LVPGRMQRVDLGPDSPRVYVDFAHTPQA 384 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +E L + GR +VV G GGDRD+ KR MG A AD+ +VTDDNPR+EDP I Sbjct: 385 VESALSAL----PGRTLVVLGAGGDRDEAKRGPMGVAAARHADVVVVTDDNPRTEDPATI 440 Query: 429 RAEIIHG---IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 RAE++ G +P I+ +R AI A+ M + D + + GKGHET Sbjct: 441 RAEVLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAVAILGKGHETTQ 490 >gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-3-3Ab] Length = 529 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 157/493 (31%), Positives = 245/493 (49%), Gaps = 29/493 (5%) Query: 13 ELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+NQ I P ++ + +DSR +QAG +F+ + G++ DG F+ +A+ +GA Sbjct: 18 QLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTRGA 77 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGK 126 A +++ + + PILV+ + + L+ A+ YG + V T Sbjct: 78 VAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVTGTN 137 Query: 127 SSVAS--FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 + ++ + Q +G + +G + + TT P+ L ++L G Sbjct: 138 GKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAGAE 197 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKES 242 +E SSH L Q R G A +TNL +DH+D+H + + Y+ AK LF+ E L + Sbjct: 198 VAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEYL--QG 255 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--------NKQQVTIS 294 A++ ADD + +++ A + Q L+ + A+ N Q T+ Sbjct: 256 RAVVNADDEGGRRLLETI-PASLEPWAYSLQ----PLEGIPALWPGDVQVHPNGLQATLH 310 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PL G F + N L A G+ + +GI L+ L VPGR E V + Sbjct: 311 TPLGTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLPGQ 370 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT + LE +LK +R GR+I VFGCGGDRD+GKRP MG+IA AD + Sbjct: 371 DITVIVDYAHTPDGLENLLKALRPQVQGRLICVFGCGGDRDRGKRPQMGRIAATWADRVV 430 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 VT DNPR+EDP++I +I+ GIPG + + +R +AIR AI D +V+AGKGHE Sbjct: 431 VTSDNPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDY 490 Query: 473 HIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 491 QIL--GREKIHFD 501 >gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 506 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 149/463 (32%), Positives = 230/463 (49%), Gaps = 40/463 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I G FVA+ G G +IP A+ +GA+ +V + S +D A + Sbjct: 33 VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAPA--SARDLVAPAVEKRAL 90 Query: 93 LVV-DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V DN L L A + ++ + +TGT+GK++ + ++ + +G+ ++G Sbjct: 91 AVYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGI---KVGV 147 Query: 150 TSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T++ F D LTTP + + L + V +E SSH LDQ+R+ G+ Sbjct: 148 LGTVNYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFD 207 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----- 260 A TN+ +DH+DYH + YF AK RLF L +I +D Y + ++ Sbjct: 208 AAVLTNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIG 267 Query: 261 ----------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 H G + + QG+ + L Q+ S +GK + PL G F Sbjct: 268 YGIGDSSLVTHEVGDKPM---VQGRILSLTG-----QGMQIETSYKGKSWVVESPLIGAF 319 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 N L A + + +G++ + L+ VPGR E V N +G I+VDYAHT ++LE Sbjct: 320 NAMNLLAAQAVGLQLGLNCKDMCV-LKDFPGVPGRLERV-INDQGLDIFVDYAHTPDALE 377 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + ++++ R+I VFGCGGDRD+ KRP+M K AD+A++T DNPRSE PE I Sbjct: 378 NVQHTLKSLDFKRLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMD 437 Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + G+ +E +R AI A+ + DVL++AGKGHE Sbjct: 438 DARPGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKGHE 480 >gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 493 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/465 (32%), Positives = 231/465 (49%), Gaps = 32/465 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E +I+ + ++S+ I G +F+A G K DG +IP+AI GA AIV + + Sbjct: 19 KEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHGATAIVTDI------YDPS 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 + T I + N + F++ Y + I+ +TGT+GK++ + V+ + ++ L Sbjct: 73 FKEITQI-ICKNVAEVEGRFSANFYQMPSQELFIVGITGTNGKTTTSFLVKYLLEQLNLP 131 Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG I + TTP L + QG +E +SH LDQ R++ I Sbjct: 132 CGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVMEVTSHALDQKRVEHI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LP-KESPAIIYADDAYSKEVMKR 259 +TNL +DH+DYHQ + Y AK +LF +L +P K+S II D E + + Sbjct: 192 DYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQIIANLDCPWFETILK 251 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + C + + +G+ + FPL G F +YN L Sbjct: 252 GIKTPIFTFGIDSPADL----RACPTSFGPTGTHIDLHYQGRSYSTFFPLIGRFNIYNCL 307 Query: 317 VAAGLCIAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 A IA+G+ + LE L ++ PGR E + N ++VD+AHT ++L Sbjct: 308 AA----IAVGLTRKITLEKLISLAQQFPPPPGRLEPI-QNDLDLNLFVDFAHTEDALYKA 362 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ + + G+II VFGCGGDRD+ KRP M + + +D+ IVT DNPRSEDP KI EI Sbjct: 363 LECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIVTSDNPRSEDPLKIIQEI 422 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 G +I + +R AI AIE N D+++VAGKGHET I Sbjct: 423 AEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKGHETTQI 467 >gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase; meso-diaminopimelate-adding enzyme; UDP-MurNAc-tripeptide synthetase) [Neisseria meningitidis WUE 2594] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 232/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ LEK+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 VALLCANGYPLDKVLDVLEKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis Z2491] gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis Z2491] gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis M01-240013] Length = 492 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + I T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEQADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium sp. P08] Length = 529 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 229/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A GA A++ + + Sbjct: 46 ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDE----HGAKLAVEAG 101 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+++VD+ R +++ A+R++G HP + + +TGT+GK++ A V+ + +G Sbjct: 102 VPVVIVDDPRAAMAVAAARIFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLRTAG---HH 157 Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G TI + L TTP L + + +G + V +E SSH L R+ Sbjct: 158 VGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRV 217 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H+T YF AK RLF L + +I DD +++++R Sbjct: 218 DGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVG--VINVDDPRGRQLIER 275 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G R ++ YQ H AI + ++ + LPGEF V Sbjct: 276 MQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFD-----VNTPSGERTLELSLPGEFNVR 330 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + G+ V + L V PGR E V + VD+AHT ++ L Sbjct: 331 NAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQAIASAL 389 Query: 374 KNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R++ SGR+I V G GGDRD KR MG++A + ADI ++TDDNPR+EDP IRA + Sbjct: 390 DAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAV 449 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G ++ G R EAI A+ M DV+ V GKGHET Sbjct: 450 LEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHET 495 >gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae MS11] gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae MS11] Length = 492 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 228/478 (47%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+ GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V G K D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDV-QGVKHRFSDLEIVGQAL 488 >gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 492 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 239/467 (51%), Gaps = 38/467 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S +SR + +F+ I G DGH F+ +A+ GA IV +L AT+ Sbjct: 23 ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNLDTNKATL--- 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++V +T K ++ A+ Y KHP + I VTGT+GK++V + + + + LS+ Sbjct: 80 ---IIVPDTNKAIATLAATFY-KHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNELSTAL 135 Query: 147 IGPTS--------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG + S+ + LT +Y AK +QGVTHV++E SSHGL+Q R Sbjct: 136 IGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAK------NQGVTHVAMEVSSHGLEQGR 189 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKE 255 L GI +FTNL +H+DYH + + Y K++LF L K+ A++ DD + + Sbjct: 190 LWGIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYEY 249 Query: 256 VMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 KR +++S G Y+ + ++ + F L GEF VYN Sbjct: 250 FQKR---TPVQIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNVYN 306 Query: 315 ALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMI 372 L A A + + I +++ +E PGR E + S G R IY+DYAHT ++L Sbjct: 307 VLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKL--ESSGNRHIYIDYAHTPDALTKA 364 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + ++ ++IVV G GGDRD+ RP++ K A +AD I+T ++PR EDP I ++ Sbjct: 365 INSLLPFKQNKLIVVVGTGGDRDKSIRPLLAK-AASVADYVILTINDPRHEDPNNILQDL 423 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +G+ + NR EAIR AI + D++++AGKG E I+ N Sbjct: 424 ENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKGKEPYQIIKN 470 >gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharophagus degradans 2-40] Length = 518 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 156/495 (31%), Positives = 244/495 (49%), Gaps = 46/495 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ VS D+R + AG +F+A+ G+K DG FI + A A +++ A + F + Sbjct: 30 KVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKC--DSATAAILAEADT---FGVDLTG 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + ++ +S A+ YG HP I+ +TGT+GK++ A + Q+ + S Sbjct: 85 AVPVVHIPQLKQKISRVAANFYG-HPSRSLTIIGITGTNGKTTCAYLLAQLLSKLQFSCG 143 Query: 146 QIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G T + F + D LTTPS + K L+ L Q V V++E SSHGL Q Sbjct: 144 MVG-TLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQ-VGAVAMEVSSHGLAQG 201 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKE 255 R+ + FTNL RDH+DYH + + Y K LF EEL S +I ADDA Sbjct: 202 RVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAREEL----SFVVINADDAVGVN 257 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------FDF 302 ++ G ++ Y + + A V S+E + Sbjct: 258 ILTN----GVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQTVAQLHTPWGAAEL 313 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G + + N L A+G V+ ++ L PGR + V ++ + ++VDY Sbjct: 314 ATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQPLAVFVDY 373 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE +L + T G++ VV GCGG+RD GKRP+M ++A LA+ ++T DNPR Sbjct: 374 AHTPDALEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAEVAERLANCVVLTSDNPRD 433 Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E+PE I +++ G+ + +R AI A+ + D +V+AGKGHE +V GE Sbjct: 434 ENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIAGKGHENYQLV-KGE 492 Query: 480 KKMSVDCDIIREILG 494 K D I +E L Sbjct: 493 KLPFDDALIAKEFLA 507 >gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA2] gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL044PA1] gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA3] Length = 499 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 229/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A GA A++ + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDE----HGAKLAVEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+++VD+ R +++ A+R++G HP + + +TGT+GK++ A V+ + +G Sbjct: 72 VPVVIVDDPRAAMAVAAARIFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLRTAG---HH 127 Query: 147 IGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G TI + L TTP L + + +G + V +E SSH L R+ Sbjct: 128 VGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H+T YF AK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVG--VINVDDPRGRQLIER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G R ++ YQ H AI + ++ + LPGEF V Sbjct: 246 MQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFD-----VNTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + G+ V + L V PGR E V + VD+AHT ++ L Sbjct: 301 NAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R++ SGR+I V G GGDRD KR MG++A + ADI ++TDDNPR+EDP IRA + Sbjct: 360 DAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G ++ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae DGI18] gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID1] gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae PID24-1] gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae PID1] Length = 492 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+ GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + N + + A+++Y + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K AII DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AIINVDDEYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Geobacillus thermodenitrificans NG80-2] Length = 489 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 170/500 (34%), Positives = 248/500 (49%), Gaps = 57/500 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56 MKLQ L LS P W R N + DSRH+ G +F + G DG Sbjct: 1 MKLQTL-----------LSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDG 49 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114 H F QA+ +GA AIV S+ + ++R+ +++ A YG+ H Sbjct: 50 HDFAEQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHR 100 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 +++ VTGT+GK++ ++Q+ +++G IG T I + TTP + L + Sbjct: 101 LHLIGVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRT 160 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + +GV V++E SSH L Q R+ G FTNL +DH+DYH T + Y NAK L Sbjct: 161 FKQMVDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLL 220 Query: 234 FEEL---LPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 F +L + P A++ DD S+ H +++ G + K V A Sbjct: 221 FAQLGNRYDERRPKFAVLNHDDPVSQYY---KHMTAAPIITYGIKEK----SDVMA---- 269 Query: 289 QQVTISVEGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 +Q+ ++ G F P L G F VYN L A C+A G A + E L + Sbjct: 270 EQIEMTPGGMAFQLCTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANV 329 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGRFE V + + VDYAHT +S+E LK +R + VV GCGGDRD+ KR Sbjct: 330 SPVPGRFETV-DEGQNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKR 388 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455 P+M + A+ AD+A+ T DNPRSEDP +I ++ G+ ++ +R EAIR AI Sbjct: 389 PLMAQAAVRYADVAVFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQ 448 Query: 456 LNKQDVLVVAGKGHETVHIV 475 + DV+++AGKGHET I+ Sbjct: 449 AQEGDVVLIAGKGHETYQII 468 >gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7425] gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425] Length = 501 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 162/495 (32%), Positives = 252/495 (50%), Gaps = 21/495 (4%) Query: 1 MKLQDLIYKDFPE--LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL++L+ E LI L P +R+I +S++S Q G +F+ + G + DG Sbjct: 1 MKLRELLTAVQSEITLIGDLPCHPA--LDREITSLSTNSWACQPGSLFIGMPGTRVDGGN 58 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F AI+ GA A +VS+A L D + ++ V + + A+ LY +P L Sbjct: 59 FWASAISAGAVAALVSAAVPLPDPAEAC-----VIPVQDVSRACGAIAAALY-NYPTQRL 112 Query: 119 AVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKAL 174 + G +G + + ++ + ++G + +G T Q+ + TTP + L L Sbjct: 113 KLVGVTGTNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQL 172 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + G +E SSH L Q R+ G G FTNL +DH+D+H+ + YF+AK LF Sbjct: 173 ASAVKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLF 232 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII DD Y + ++++ A S + + + + N + + Sbjct: 233 SPGY-LSGKAIINQDDPYGQRLIQQLEPAQVWTYSTSDSTADFYTRDLNYLANGVEGILH 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNS 353 + F PL G+F V N L A G +++G++ + L + VPGR + V S Sbjct: 292 TPEGEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPS 351 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + + VDYAHT +SLE +L+ R R+I VFGCGGDRD+ KRP MG IA LAD Sbjct: 352 QDISVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKRPKMGGIAAQLADQV 411 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +VT DNPR+EDP++I +I+ G+P I +G+R +AI+TAI D +++AGKGHE Sbjct: 412 VVTSDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHE 471 Query: 471 TVHIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 472 DYQIL--GTEKVHFD 484 >gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia sp. Ejp617] Length = 495 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 159/488 (32%), Positives = 239/488 (48%), Gaps = 30/488 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR + +FVAI G+ DG FIPQAIAQG A++ + +D Sbjct: 19 ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y + P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAAMEISSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y AK LF E + AII ADD + ++ Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV +V S + D L G F V N Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ + +L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP I +I+ Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 430 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G R +A+ + + D+++VAGKGHE I+ + S D D Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486 Query: 489 IREILGLI 496 + +LG++ Sbjct: 487 VARLLGVL 494 >gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus G9241] Length = 499 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 230/467 (49%), Gaps = 32/467 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 29 EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I G+II VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 375 ISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKG 434 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++E AI AI M + D++++AGKGHET I+ + Sbjct: 435 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 481 >gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis CO72] Length = 520 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 237/463 (51%), Gaps = 28/463 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA-----IAQGAEAIVVSSAYSLQDFS 83 + ++ DSR I A FV + + +D + A + + A V+S Sbjct: 40 QFDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDSAAFVISELDLAGLDL 99 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQR 139 I+ PI+ V N R +L L A+RL H I+AVTGT+GK++V+ + Q+CQ Sbjct: 100 DDIQ--IPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQA 157 Query: 140 SGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 SG+SS +G + Q TT + + ++ +GV +++EASSHGLDQ+ Sbjct: 158 SGISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQY 216 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256 RL G+ +I +TNL RDH+DYH +Y +AK +LF++ L P ++ DD + Sbjct: 217 RLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPA 273 Query: 257 MKRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A R++ Q + K V + ++ + + + PL G F V N Sbjct: 274 LFDYEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDN 333 Query: 315 ALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 L + A+ A L +L +L GR + +S+ G +DYAHT ++L+ +L Sbjct: 334 LLASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVL 391 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ Sbjct: 392 SSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQ 451 Query: 434 HGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ I + +R AI A++ K D++V+AGKGHET Sbjct: 452 KGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494 >gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [cyanobacterium UCYN-A] Length = 497 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 152/470 (32%), Positives = 237/470 (50%), Gaps = 23/470 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +S++S + IF+ + G + DG F AI GA A+V+S +++ I Sbjct: 25 EEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQSAIKAGAVAVVISPQAAIK---FPIN 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VASFVQQICQRSG 141 +++V++ S A+ Y E+I + T + F+ + + + Sbjct: 82 DLHCVIIVEDVILTASEIATAFYSYPSEDIKMIGVTGTNGKTTTTHLIEYFLTECKKNTA 141 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L IG S + F Q + TTP L LS + +E SSH L Q R+ Sbjct: 142 L----IGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAVIDKNEYCVIEVSSHALVQGRVK 197 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKR 259 G FTNL +DH+D+H+ + YF AK LF E L + A++ DD+Y + +++ Sbjct: 198 GCGFNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEYL--QGKAVVNIDDSYGERLIQY 255 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 S+ H + H++ + + G +F+F PL G+F + N L A Sbjct: 256 LGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGGNFEFQSPLVGKFNLSNLLAAI 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRT 378 + ID V+ L + VPGR E + + + + VDYAHT +SLE +LK R Sbjct: 316 ATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDISVIVDYAHTPDSLENLLKATRP 375 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 SG++I VFGCGGDRD+ KR IMGKI LADI+++T DNPR+E+PE+I ++I+ G+P Sbjct: 376 FISGKVICVFGCGGDRDRSKRSIMGKICAKLADISVLTSDNPRTEEPEQILSDILEGVPK 435 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 F NR EAI+TAI + D +++ GKGHE I+ G +K+ D Sbjct: 436 NANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQIL--GTEKIYFD 483 >gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Xenorhabdus bovienii SS-2004] Length = 495 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 164/488 (33%), Positives = 237/488 (48%), Gaps = 30/488 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + E++ DSR AG +FVA+ G++ DG +IPQAIAQG A++ + + + Sbjct: 19 ELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAVIAEAKGKTDNGTIQA 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ +D+ LS A Y +HP N L + G +G + + Q + Q S Sbjct: 79 MHGVPVIYLDDLNNKLSKLAGEFY-QHPGNKLKLVGVTGTNGKTTTTQLLAQWSQ----G 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G S + + L TT S + + L L +Q T ++E SSHGL Q R Sbjct: 134 LGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFAAMEVSSHGLVQGR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH + Y AK LF K+ II ADD ++ + Sbjct: 194 VAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQK--IINADDDVGQKWLT 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 R L + G+++ + +T + PL G F V N Sbjct: 252 RLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLNSPLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L+A +++ +LE L V GR E R + VDYAHT ++LE L Sbjct: 312 LLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRP-TVVVDYAHTPDALEKALS 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R G++ VFGCGGDRD+GKR +MG IA AD IVTDDNPRSE+P I +I Sbjct: 371 AARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQGADRVIVTDDNPRSEEPHSIVEDI-- 428 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + GFI+ G R+EA+ +AI ++DV++VAGKGHE +V N S + Sbjct: 429 -LTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKGHEDYQLVGNRRLDYSDRLTV 487 Query: 489 IREILGLI 496 R +LG+I Sbjct: 488 AR-LLGVI 494 >gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster bacterium] Length = 495 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 237/459 (51%), Gaps = 40/459 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN + ++ + Q G +F+A+ G G I +AI +G A++V S D I Sbjct: 51 EINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEKGCVAVLVDS----HDLECAI-- 104 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ ++N +++L AS Y + + ++ VTGT+GK+SV F+ Q+ G+ + I Sbjct: 105 --PVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNGKTSVGYFISQMLSELGIKNGFI 162 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G T IS+ + TTP L KAL + +E SSHGLDQ+R+ G+ Sbjct: 163 G-TLGISNSDVASANTTPDIFTLYKALHQYHLDNINTAVLEVSSHGLDQNRVAGLNFKQA 221 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +DH+DYHQT Y K++LF II DDAY ++ + + Sbjct: 222 IFTNLTQDHLDYHQTLDEYRQVKLKLFS--FDSIQSVIINQDDAYHQDFLDAS------- 272 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGLC 322 +GK + +I + +++TI+ +G +F F PL G+F + N L A Sbjct: 273 -----KGK---KQTTYSIKDFEKITINEQGFLCQLDNFVFEIPLLGKFNLSNVLAAFNSV 324 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381 +G ++ L +L GR + + + +VDYAHT ++L + ++ Sbjct: 325 EQLGFSREGIIPLLSRLFPPLGRMQKI----KKALAWVDYAHTPDALANAITTLKEHHPE 380 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 +I +VFGCGG+RD+ KR MGKIA LAD ++T+DNPR EDP+ I +I+ GI E Sbjct: 381 HKIRIVFGCGGNRDKSKRAKMGKIASKLADTIVLTNDNPRKEDPQAIINDILSGIDDSFE 440 Query: 442 KG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +R AI TAI LN+ + L++AGKGHE+ N Sbjct: 441 LDITLDRQLAIETAITTLNEGECLLIAGKGHESTQEFKN 479 >gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus m1293] Length = 499 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 234/470 (49%), Gaps = 38/470 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 29 EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEGAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G ++S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L ++ A++ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + + K + + +S + + L G F VYNA Sbjct: 258 FKKITSA--EVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEIEISLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + I GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVAIVEGIPLTNICDSLSNLKCIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 431 Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 GF++ N R AI AI M + D++++AGKGHET I+ + Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 481 >gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase MurE [Pantoea ananatis AJ13355] Length = 471 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 157/457 (34%), Positives = 225/457 (49%), Gaps = 23/457 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVAI G++ DG FIPQAIAQG A++ + D P++ + Sbjct: 4 DSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y + P + G +G + + Q + Q + L +G TS + Sbjct: 64 AQLHQRLSALAGRFY-QQPGEKQKLIGVTGTNGKTTTTQLLAQWASL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + TT S + + L L +G + ++E SSHGL QHR+ + A Sbjct: 119 TVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH Q Y +AK LF E + AII ADD + + +A Sbjct: 179 VFTNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLANLPDAVAVT 236 Query: 268 ----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L G G+++ V N + + + L G F V N L+A + Sbjct: 237 MENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+G +L +L V GR E + + VDYAHT ++LE L+ R G+ Sbjct: 297 ALGYALDDLLRAAARLQPVNGRMEVFSATGKP-TVVVDYAHTPDALEKALEAARLHCKGK 355 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + +FGCGGDRD+GKRP+MG IA ADI +VTDDNPRSEDP+ I +I+ G+ PG Sbjct: 356 LWCLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLDPGRAR 415 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R +A+ + I D+++VAGKGHE I+ N Sbjct: 416 VVAGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGN 452 >gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiobacillus denitrificans ATCC 25259] gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus denitrificans ATCC 25259] Length = 506 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 162/503 (32%), Positives = 246/503 (48%), Gaps = 34/503 (6%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 I + P ++ +L + P E+ +DSR G +FVA G+ DG FIPQA+AQ Sbjct: 18 IRESVPHILERLGLAP--------GELVNDSRRAAPGKVFVAYPGDARDGRDFIPQAVAQ 69 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA+ ++ + + D + I P V + + A+ +YG+ +++ VTGT+ Sbjct: 70 GADGVLWEADHYQWDPALAI----PNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTN 125 Query: 125 GKSSVASFVQQICQRSGLSSFQIG------PTSTISSFAQDNRL-TTPSPIYLAKALSYL 177 GK+SVA ++ Q G + IG P++ + A L TTP I L + L+ Sbjct: 126 GKTSVAHWIAQALSALGRKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARY 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G ++E SSHGL Q R++G + TNL RDH+DYH +Y AK RLF Sbjct: 186 RGEGAVACAMEVSSHGLAQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFN-- 243 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P A++ DDA+ + + A RV G+Q + + + + + + Sbjct: 244 WPDLEWAVLNVDDAFGQRLEGETRPA--RVAGYGFQRGAVVARGLQLSQAGMHLALQTDW 301 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D + PL G F N L A + + L ++ GR + +G + Sbjct: 302 GDAEIDAPLLGRFNAANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQTLGGEAHP-L 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDY+HT ++LE +L +R I G R+I VFGCGG+RD+GKRP+MG A AD VT Sbjct: 361 VVVDYSHTPDALEKVLATLREIAGGGRLICVFGCGGNRDKGKRPLMGAAAGRGADEIWVT 420 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRT-----AIEMLNKQDVLVVAGKGHE 470 DNPR EDP I +I G+ +G R+EA R A+ + DV+++AGKGHE Sbjct: 421 SDNPRHEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKGHE 480 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V GE+ D + R+ L Sbjct: 481 DYQEVA-GERLPFSDIAMARKAL 502 >gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured Prochlorococcus marinus clone HF10-88F10] Length = 511 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/492 (29%), Positives = 247/492 (50%), Gaps = 37/492 (7%) Query: 13 ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG F +AI GAEA Sbjct: 8 KLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 ++ SA ++ A+I +++ DN + + + I + VTGT+GK+++ Sbjct: 68 IIGSA--AKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTI 125 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + ++ G + G + F++ TT L K L+ +E Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILE 185 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246 SSH + Q R+ G + A FTN +DH+DYH ++YF K +LF L K+ ++ Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVL 245 Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293 DD + S ++ KR+ ++ ++ KF C H ++ Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--- 302 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352 PL GEF + NA+ A + + + + ++ PGR E + + Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDD 357 Query: 353 ---SRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 SR I VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + Sbjct: 358 NDVSRSLPTIIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 L+D +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++A Sbjct: 418 LSDQLFITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIA 477 Query: 466 GKGHETVHIVTN 477 GKGHE I+ + Sbjct: 478 GKGHEDYQILND 489 >gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Klebsiella sp. MS 92-3] Length = 471 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 235/463 (50%), Gaps = 35/463 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D P++ + Sbjct: 4 DSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P L + G +G + + Q + Q + L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + LS L QG T ++E SSHGL QHR+ ++ A Sbjct: 119 TVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + G++ LK ++ TI S GK + L G F V N L+A Sbjct: 237 MEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFNVSNLLLALA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A+G A +L+ +L V GR E + + VDYAHT ++LE L+ R Sbjct: 294 TLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHC 352 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G + Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGML 409 Query: 441 EKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G R EA+ A+ + DV++VAGKGHE IV N Sbjct: 410 DAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 452 >gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 471 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 235/462 (50%), Gaps = 37/462 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S +G Sbjct: 64 SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH Y AK L+ AI+ ADD EV +R + ++V Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASLPDAVAVSM 237 Query: 273 QGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFP---------LPGEFQVYNALVAA 319 +G H+ C H + +VE G F L G F V N L+A Sbjct: 238 EG---HINPNC--HGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLAL 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ R Sbjct: 293 ATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLH 351 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G Sbjct: 352 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGM 408 Query: 440 IEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++ G R EA+ I DV+++AGKGHE IV Sbjct: 409 LDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIV 450 >gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CB0101] Length = 506 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 158/483 (32%), Positives = 241/483 (49%), Gaps = 42/483 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR + G +FV + G + DG +F PQAI GA V+ A + + Sbjct: 25 VTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAVLAVIGRAAA---EACPPADQ 81 Query: 90 TPILVV-DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LVV D ++ + A+ + + + +++ VTGT+GK++ ++ + G S Sbjct: 82 DPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTTTHLIEHLAASCGTPSAL 141 Query: 147 IG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G P ++++ + TT L L+ + G ++E SSH LDQ R+ Sbjct: 142 FGTLVNRWPGHSVTA-----QHTTAFADVLQGQLAQAAEAGAQVGAMEVSSHALDQQRVS 196 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEV 256 G + FTNL +DH+DYH + QAYF AK LF E+ ++ A++ DD + +++ Sbjct: 197 GCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATAVVNVDDPWGQQL 256 Query: 257 MKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +R R L + + + + + V +S G F PL G F + N Sbjct: 257 AERLGGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSG-PFQSPLLGRFNLMNQ 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----------IYVDYAHT 365 L A G + G+ A +L+ L VPGR E VG GR + VDYAHT Sbjct: 316 LQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGV----GRAECCEGSLPAVLVDYAHT 371 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE LK R G++I VFGCGGDRD+ KRP+MG IA LAD +VT DNPR+EDP Sbjct: 372 PDGLESALKACRPFAQGQLICVFGCGGDRDRTKRPLMGSIAARLADQVVVTSDNPRTEDP 431 Query: 426 EKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 ++I +++ GIP + +R AI + D++++AGKGHE I+ G K+ Sbjct: 432 QQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKGHEDYQIL--GTTKI 489 Query: 483 SVD 485 D Sbjct: 490 HFD 492 >gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679] gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae SK-92-679] Length = 492 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACQVEYTDGRSYIPAAVANGA-------AFVFWDDDGRFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + IG Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINTDDGYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALSTLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD GKRP+MG A+ AD +VT DNPR E+P+ I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria polysaccharea ATCC 43768] Length = 492 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 160/488 (32%), Positives = 232/488 (47%), Gaps = 34/488 (6%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 KL L DFP L+ + + + SDSR I+ G IFVA G DG +IP Sbjct: 4 KLTPLAETDFPPLLCANAAGRL---------LHSDSRQIKQGDIFVACPGEYADGRSYIP 54 Query: 62 QAIAQGAEAIVVSSAYSLQD----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 A+A GA A+ D F+ P + + + + A+++YG + Sbjct: 55 AAVANGA-------AFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGL 107 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174 + VTGT+GK+S+ ++ Q G + IG ++ TTP+P+ + L Sbjct: 108 KVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEETTHTTPAPVDVQTLL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 QG T ++E SSHGLDQ R++G+ + FTNL RDH+DYH T +AY K RLF Sbjct: 168 YRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYDAIKSRLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GY---QGKFIHLKKVCAIHNKQQ 290 A+I DD Y E++ R C L+V GY + I + A + Sbjct: 228 --YWQDLQHAVINIDDEYGAELVCRLKK-DCPDLAVYGYGFSERADIRITDFTASSDGIA 284 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + L G F N L A G VL+ LEK+ GR + + Sbjct: 285 AVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLDVLEKIRPASGRMDCI- 343 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408 NS + VDYAHT ++LE L ++ I + VFGCGG+RD+GKRP+MG A+ Sbjct: 344 MNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQ 403 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGK 467 AD +VT DNPR E+P+ I +I+ +P + +R AIR A+ D++++AGK Sbjct: 404 GADKVVVTSDNPRLENPQDIINDILPAVPNPERVEADRAAAIRYAVGRAAVNDIILIAGK 463 Query: 468 GHETVHIV 475 GHE V Sbjct: 464 GHENYQDV 471 >gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus AH1271] Length = 500 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V ++Q Sbjct: 29 EITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIQ----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAIIASHFYG-YPSNKIKLIGITGTNGKTTTSYLLEKILTDHGF 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + + T P L + L + + + +E +S GL R+ G Sbjct: 139 QTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T + Y K LF L + AI+ ADD S E Sbjct: 199 CNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFSTTDKKIAILNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + Q +S + + L G F VYNA Sbjct: 258 FKKVTSA--EVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEKEINLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + I + + L + + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVALVEDIPLTNISDSLSHVKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G+II VFGCGGDRD KR IMG+IA +D +T DNPRSEDP+ I +I G Sbjct: 375 ISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGSYSDFVYITSDNPRSEDPQAIMKDIEKG 434 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + ++E AI AI M + D++++AGKGHET I+ Sbjct: 435 LSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479 >gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. CCY0110] Length = 490 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 156/470 (33%), Positives = 232/470 (49%), Gaps = 21/470 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + +S++S Q G IF+ + G + DG F A+ GA A ++S + + F Sbjct: 17 ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQ-AAEKFPPN- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +++VD+ + A+ YG HP L + G +G + + I G S Sbjct: 75 -DDQCVIIVDDLITVAAEIAAAFYG-HPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQ-- 130 Query: 147 IGPTSTISS-------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 PT+ I + F Q TTP L + L+ + + +E SSH L Q R+ Sbjct: 131 -KPTALIGTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRV 189 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 FTNL +DH+D+H+ + YF+AK LF +E AII DD Y K +++ Sbjct: 190 KQCPFKVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEK-AIINLDDPYGKRLIES 248 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 SV + + N T+ +F PL G+F + N L A Sbjct: 249 FKPEQVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAV 308 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRT 378 + G+D +E L VPGR E V N + + VDYAHT +SLE LK R Sbjct: 309 SAVLHFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARP 368 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G++I VFGCGGDRD+ KRP+MG+ + LAD+++VT DNPR+EDP++I +I+ GI Sbjct: 369 FVKGKLICVFGCGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQ 428 Query: 439 FIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +E +R EAI+TAI D +++AGKGHE I+ G +K+ D Sbjct: 429 SVEPLVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 476 >gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. DR1] Length = 499 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 244/478 (51%), Gaps = 61/478 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ + S DSR +Q+G IF+A+ E F A+A GA AI+ + + + Sbjct: 16 QWSQQPFHGFSLDSRKVQSGQIFIALTSYSQPEKTRAFAESALANGALAIISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFV--- 133 V + R+ + + R Y +H P I+AVTGT+GK++++ V Sbjct: 76 E----------WVCPDVRQRMGEWQER-YLQHIDPVTPARIVAVTGTNGKTTISRLVAEL 124 Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 QQ C G + I P T S+ TT + L AL + QG T S+EA Sbjct: 125 ISSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL+G + ++NL RDH+DYH T +AY AK LF A+I D Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FNSLKVAVINLD 236 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304 D ++ ++ A + + Y L + A + ++ S+ G F+ + Sbjct: 237 DEHAALMINAAKQNPAQPKILTYS-----LTQNTADYYISDLSYSLAGATFNLVSSQGSF 291 Query: 305 ----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G F V N + A G D ++ + KL PGR + + G R++V Sbjct: 292 AVQSPLLGHFNVENLIAALIAAEQAGFDLDALVAFVPKLIGAPGRMQVI---RDGERLFV 348 Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 DYAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DN Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNKQ----DVLVVAGKGHE 470 PR+EDPE+I A++ GI F G+R++ I R AI+ + +Q D++V+AGKGHE Sbjct: 409 PRTEDPEQIFADMKQGI-NF--SGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463 >gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella benthica KT99] Length = 492 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/464 (32%), Positives = 237/464 (51%), Gaps = 20/464 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RS 88 N +S DSR I AG +F+A+ G+ DG FI A QGA A +V S + + ++ Sbjct: 19 FNNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQGAVAALVHSDDPAEHGRLKLEQT 78 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +P ++ + LS ++ Y G H ++ VTGT+GK+S+ + Q+ G + Sbjct: 79 GSPQVLFFQLSQHLSAIGAQAYPLGAHRLKLIGVTGTNGKTSITQLMAQLVALLGKQASL 138 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + D+ TT PI ++ L + G ++E SSHGL Q R++ + Sbjct: 139 MGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGADLCAMEVSSHGLIQGRVEAVPFD 198 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T QAY +AK RLF+ +I DD ++ + +A Sbjct: 199 VAVFTNLSRDHLDYHGTMQAYGDAKKRLFK--FTSLQSGLINLDDEVGRQWLSEEQSA-- 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ---VTISV---EGKDFDFLFPLPGEFQVYNALVAA 319 + + + + + N Q VT ++ EG+ PL G F + N + A Sbjct: 255 KHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQ-AKLASPLLGYFNLSNLVAAL 313 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G IG D + + +L V GR E T++ G + VDYAHT +++E LK +R Sbjct: 314 GALYLIGYDMRAMAASVPQLKSVAGRMERFTTDN-GVTLVVDYAHTPDAIEQALKALRGH 372 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 G++ +FGCGGDRD+GKRP+M + A AD +VT DN RSE PE I EI+ G+ Sbjct: 373 CEGQLWCLFGCGGDRDKGKRPLMAQAAEAYADKVMVTSDNARSESPEVIIEEILAGLDAP 432 Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + + +R +AIR + + D++++AGKGHET + GE+ Sbjct: 433 ERVLTQVSREKAIRQVVALAKPGDLILLAGKGHETYQEIA-GER 475 >gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 496 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 170/513 (33%), Positives = 250/513 (48%), Gaps = 65/513 (12%) Query: 14 LINQLSIFPMQWRERKINEVSS-----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 L+ +L+ + M + R E S DSR +Q G +F+ + G+ DGH + QA QGA Sbjct: 2 LLKKLATYFMTSQIRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A+VV L D + P L V ++R+ +++ +G P + L V G +G + Sbjct: 62 AALVVERW--LDDVA------LPQLKVKDSRQAMAVLGGVFFGA-PSSRLKVIGVTGTNG 112 Query: 129 VAS---FVQQICQRSGLSSFQIGPTSTISSFAQDN---RLTTPSPIYLAKALSYLSSQGV 182 + +++I Q G + IG FA TTP + L + L ++ G Sbjct: 113 KTTTTYLIERILQDQGRETGLIGTIQ--RRFAGQTYPMSGTTPESLELQQYLHDMAEGGG 170 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----- 237 + +E SSH L Q R+ G + FTNL +DH+DYH+T Y AK F L Sbjct: 171 EYCVMEVSSHALAQGRVKGTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYA 230 Query: 238 -LPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 P+E S A++ DD S K+ V++ G + A ++I+ Sbjct: 231 ENPEERSYAVLNVDDPASAYFAKQT---AAEVITYGVEQD--------ADVRASNISITA 279 Query: 296 EGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 G F D + G+F VYNAL A + GI + LE + V GR Sbjct: 280 RGTSFHVDTFRGSADISLRMVGKFNVYNALAAISATLLEGIPLEQIKASLESVKGVEGRV 339 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V + + VDYAHT + LE +L+ + GR+I VFGCGGDRD+ KRPIMG+IA Sbjct: 340 EAV-DEGQDFAVIVDYAHTPDGLENVLRTVNEFAKGRVICVFGCGGDRDRKKRPIMGQIA 398 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEML 456 AD +VT DNPR+EDP+ I +I G+ +E G +R EAI AIEM Sbjct: 399 AKYADYVLVTSDNPRTEDPQAILRDIEQGL---VEDGVDQARYELIVDRREAIGKAIEMA 455 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 +++DV+++AGKGHET ++ G K + D I+ Sbjct: 456 SREDVVLIAGKGHETYQLI--GSKVLDFDDRIV 486 >gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Photobacterium profundum SS9] gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Photobacterium profundum SS9] Length = 506 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 162/494 (32%), Positives = 253/494 (51%), Gaps = 25/494 (5%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S + +WRE + ++ DSR I+A +FVA+ G+ DG FIP AI GA A++ + Sbjct: 21 SDWQEKWREHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNI 80 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ 135 + + I+ ++LS A+R Y + P+ +LAVTGT+GK++++ + Q Sbjct: 81 AKHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQ-PDTRLKLLAVTGTNGKTTISQLLAQ 139 Query: 136 ICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G ++ +G T ++S TT + I + L L QG ++E SSHG Sbjct: 140 WANLIGYNAGVMGTTGNGLLNSLTPAVN-TTGNAIEIPHVLHDLVDQGADFAAMEISSHG 198 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L Q R+ ++ +A FTNL RDH+DYH Y +AK LF E + +I ADD Sbjct: 199 LVQGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTE--HQAGIPVINADDDIG 256 Query: 254 KEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPL 306 + +A V L YQG+ + L V +++ Q V IS + F PL Sbjct: 257 FTWLADLPHAVAVVTDKARLGEHYQGQALWLTDV--MYSTQGVNISFDSSWGAGQFTAPL 314 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L+A +A+G ++ L V GR E + + + VDYAHT Sbjct: 315 VGSFNVSNLLLALATLLALGHSIDKLIATAPHLTAVIGRMEVFQSPDKP-MVVVDYAHTP 373 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++LE L+ +R G++ +FGCGGDRD GKRP+M +I+ LAD I+TDDNPR+E P Sbjct: 374 DALEKALQALRVHCQGKLWCIFGCGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPA 433 Query: 427 KIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I ++++ G+ ++ +R A AIE D++++AGKGHE ++ + Sbjct: 434 AIVSDMLQGL-ALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKGHEDYQVLADRTIHY 492 Query: 483 SVDCDIIREILGLI 496 S D + ++ + G I Sbjct: 493 S-DRETVQALFGEI 505 >gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36] gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36] Length = 503 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 159/497 (31%), Positives = 245/497 (49%), Gaps = 24/497 (4%) Query: 13 ELINQLSIFPMQ-WR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 E+ + + +Q W E +N + DSR +QAG FVAI G+ DG FI +A+ GA Sbjct: 11 EMNSSCRVLSLQAWNIDLELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGA 70 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A++ + + PI+ + LS A Y + + + VTGT+GK Sbjct: 71 TAVLKDADNEAEHGHIDYIDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGK 130 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRL--TTPSPIYLAKALSYLSSQGV 182 S++ Q I L + + G TI + FAQ + TT S + + ++ QG Sbjct: 131 STI---TQIIANWVTLLAGKAGVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGA 187 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++E SSHGL Q R++ + FTNL RDH+DYH AY +AK LF+ + + Sbjct: 188 ELCAMEVSSHGLIQGRVNALDFDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHK- 246 Query: 243 PAIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 I+ DDAY K ++ +A R + G F++ ++ + D Sbjct: 247 --ILNVDDAYGKMWAQQWSDAIQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGD 304 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L GEF N + A +A+G D +L KL V GR E + + Sbjct: 305 GTLQCSLIGEFNASNVVAACASLLALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAACV- 363 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L+ +R G++ ++GCGGDRD GKRP+M ++A AD+A++TDDN Sbjct: 364 VDYAHTPDALEKALQALRVHCEGKLWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDN 423 Query: 420 PRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PR+E I ++++G+ P +R AI+ A+E + D+++VAGKGHE I+ Sbjct: 424 PRTESAAAIVTDMLNGLAKPDAAHVIHDRRRAIQWAMEQSSADDIILVAGKGHEDYQII- 482 Query: 477 NGEKKMSVDCDIIREIL 493 EK D + I E+L Sbjct: 483 GVEKHHYSDRETITEML 499 >gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM 17836] Length = 532 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 227/451 (50%), Gaps = 19/451 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR I+ G ++ A+ G G F+ A A GA A++ A + +A + Sbjct: 67 VTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTAGL--- 123 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LVV + R L A+ +YG+ +++ L +TGT+GK++ + + + +R G ++ Sbjct: 124 -PLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPAALVG 182 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + I + +TTP L + + QGV ++E SSH L + R+DG + Sbjct: 183 TIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARYSVA 242 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H+T + YF AK LF P+ A++ DD Y + + + Sbjct: 243 GFTNLSQDHLDFHKTFEQYFAAKASLFT---PERCDLAVVNIDDKYGRRLAAQT-VVPLV 298 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +S + + H + I G+ LPG+F V NAL+A + + Sbjct: 299 TVSTTRDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDFNVANALLAVAMLRQVD 358 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + + L V PGR E G + VD+AHT +++E+ L+ R T GR+ Sbjct: 359 VPADEIAAGLRTARV-PGRMETF-LRPDGLAVIVDFAHTPDAVELALRAARGATKGRLYA 416 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FI 440 V GCGGDRD GKRP MG A AD IVTDDNPR EDP IRA + G Sbjct: 417 VVGCGGDRDPGKRPAMGAAAARAADTVIVTDDNPRGEDPATIRAAAVEGARAAVPDVELR 476 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 E G+R AIRTAIE+ D +VV GKGHET Sbjct: 477 EVGDRRAAIRTAIELAGPGDTVVVLGKGHET 507 >gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis HAW-EB3] Length = 493 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 224/456 (49%), Gaps = 20/456 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 N+++ DSR + G +F+AI G++ DG +I A+ QGA A +V + Sbjct: 19 FNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASLVHTDDPESHGKCVDDEG 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 IL R+ LS A++ Y E ++ VTGT+GK+S+ + Q+ G S + Sbjct: 79 KQILFFQLNRQ-LSALAAQAYPLSAERLKLVGVTGTNGKTSITQLMAQLVTLLGKQSAVM 137 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + D+ TT I + L +QG ++E SSHGL Q R++ + Sbjct: 138 GTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVSSHGLIQGRVEAVPFDV 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH T QAY +AK RLF P S +I DD K+ + H+ G + Sbjct: 198 AVFTNLSRDHLDYHGTMQAYGDAKKRLFN--FPSLSSGLINLDDEIGKQWLAE-HDTG-K 253 Query: 267 VLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 S G+ ++ AI H + G D PL G F + N + A Sbjct: 254 YTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLCSPLLGSFNLSNLIAA 313 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G +G D ++ + KL V GR E T I VDYAHT +++E LK +R Sbjct: 314 LGALYLLGFDMHSLVAVVPKLQAVAGRMERF-TTPDDVTIVVDYAHTPDAIEQALKALRG 372 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G + +FGCGGDRD+GKRP+M + A AD +VT DN RSE P+ I +I+ G+ Sbjct: 373 HCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADRVVVTSDNARSEQPDVIINDILEGLTA 432 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + + +R AIR + D++++AGKGHET Sbjct: 433 PDKALTQVDREVAIRQVVANAKAGDLVLLAGKGHET 468 >gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J139] gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL001PA1] gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA2] gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA3] gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA4] gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL060PA1] gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA2] gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL103PA1] Length = 499 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 159/468 (33%), Positives = 234/468 (50%), Gaps = 44/468 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ ++ A + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEAGV--- 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145 PI+VVD+ R +++ A++++G HP + + +TGT+GK++ A V+ +C + Sbjct: 73 -PIIVVDDPRAAMAVAAAKVFG-HPSDAMTMFGITGTNGKTTTAFLVEAGLCA----AGH 126 Query: 146 QIGPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +G TI F D +TTP L + ++ +G + V +E SSH L Sbjct: 127 HVGTIGTIG-FRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQ 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD ++++ Sbjct: 186 RVDGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLV 243 Query: 258 KRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +R G + ++ YQ H + AI + +S + LPGEF Sbjct: 244 ERMQANGVKAVTTSIHQPSDYQVTSWHAARAGAIFD-----VSTPSGERTLELSLPGEFN 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NA +A + A G+ V + L V PGR E V VD+AHT ++ Sbjct: 299 VRNAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIAS 357 Query: 372 ILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA Sbjct: 358 ALDAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417 Query: 431 EIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 ++ G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 492 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 239/468 (51%), Gaps = 26/468 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V+ D+R ++ G +FV I+G+ +GH +A+ +GA +V S ++ Sbjct: 24 EITKVTQDTREVEPGSLFVCIIGSLHNGHELAKEAVQKGAVLVVASEPLDVE-------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V+NT K +++ A+ Y +N ++ VTGT+GK++V + I + Sbjct: 76 -VPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGTNGKTTVTHLLDYIFHDHKEKTGV 134 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + + TTP + L K L + GV S+E SSH L Q R+ G Sbjct: 135 IGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGVQTCSMEVSSHSLVQGRVWGTDFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRA 260 FTNL +DH++YH T + Y AK LF +L ++ P AI+ DD + ++ Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQDKPKFAILNFDDPVGRSFEEKT 254 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V S G I NK + ++ E + ++ L G+F V NAL A Sbjct: 255 ---AASVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQVYEVQLQLVGKFNVSNALAAI 311 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A G++ V++ L ++ V GRFE V + VDYAHT + L +L + I Sbjct: 312 AGAYAAGLELPSVIQSLSQISGVRGRFEIV-KGEYDFAVIVDYAHTPDGLLNVLNAVNEI 370 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 +G + V GCGGDRD+ KRPIM +IA +D I T DNPR+EDP I E++ G+ Sbjct: 371 KTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSDTVIFTSDNPRTEDPNAILNEVVAGLEEE 430 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R EAI++AI+ D++++AGKGHE I+ G +K+ D Sbjct: 431 SYQLIPDRREAIQSAIKQAAPNDIVLIAGKGHENYQII--GTEKIHFD 476 >gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis alpha710] gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis OX99.30304] Length = 492 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 232/477 (48%), Gaps = 34/477 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKF-----IHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAA 319 L+V Y F I + A + T+ EGK L G F N Sbjct: 258 LAV-YSYGFSEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLL---GRFNAQNLAACI 313 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ I Sbjct: 314 ALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQEI 372 Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ +P Sbjct: 373 KPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVP 432 Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 433 APECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi 35000HP] Length = 501 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 241/472 (51%), Gaps = 24/472 (5%) Query: 25 WRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W E+ I +++ DSR + G +F+A+ G++ DG FI AI QGA AI+++ A S QD Sbjct: 14 WVEQLIPLKQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGA-AIILAEAESDQDE 72 Query: 83 ----SATIRSN-----TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131 S R N ++ V + LS A Y + + +TGT+GK++ A Sbjct: 73 IELDSQFARYNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQ 132 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q G S +G + Q+ TT S I + + L+ QG ++E S Sbjct: 133 LLAQWHNLLGGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVS 192 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL Q+R++ ++ FTNL RDH+DYH + AY AK RLF L K ++ ADD Sbjct: 193 SHGLAQYRVEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQ--VLNADD 250 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308 ++ + NA + + +K + Q I E + F L G Sbjct: 251 QVAQNWLSMLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSG 310 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTS 366 F V N L+A + +G D A ++ +L V GR + V + R + VDYAHT Sbjct: 311 AFNVTNILLALAGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTP 370 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L+ L+ R T G++ VFGCGGDRD GKRP+M IA +LAD IVT+DNPR+ED Sbjct: 371 DALQKALQAARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQH 430 Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 KI AEI+ G + +R +AI+ AI+ + D++++AGKGHE I+ Sbjct: 431 KIVAEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKGHENYQII 482 >gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Azoarcus sp. BH72] Length = 501 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 229/459 (49%), Gaps = 32/459 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR + G +F A G+ DG +I AI +GA A++ + P Sbjct: 22 ITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELPV----PG 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V R+ A +Y + + VTGT+GK++V Q + + G + G Sbjct: 78 FAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTV---TQWLARALGELGSRCGIV 134 Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+ S D TTP + L L+ L +G ++E SS GLDQ R++G++ Sbjct: 135 GTLGSGFPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDV 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH+T AY AK RLF LP S A+I DDA+ +R AG + Sbjct: 195 AVFTNLTRDHLDYHRTMDAYAEAKARLFA--LPGISRAVINLDDAFGLTQARRLVAAG-Q 251 Query: 267 VLSVGYQ-----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 V +GY + + ++ A + Q ++ G+ D + F V N Sbjct: 252 VDVIGYTCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNL 311 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G + G+ L + +L+ GR + VG I +DYAHT ++L +L+ Sbjct: 312 LAVIGALVMRGVAVEEALAVVGRLNPPEGRMQLVGGIGEP-LIVIDYAHTPDALAKVLEA 370 Query: 376 IR-TITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R T+ S GR++ VFGCGGDRD GKRP+MG++A LAD +VT DNPRSEDP KI I Sbjct: 371 VRGTVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAI 430 Query: 433 IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G + +R EAIR A+ DV+V+AGKGHE Sbjct: 431 AAGAGASADCIVDRAEAIRIAVGEAGPDDVVVLAGKGHE 469 >gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Cardiobacterium hominis ATCC 15826] gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Cardiobacterium hominis ATCC 15826] Length = 483 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 145/409 (35%), Positives = 207/409 (50%), Gaps = 30/409 (7%) Query: 102 LSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 L A+R Y HP ++ VTGT GKSS+ F+ Q + L + G + + Sbjct: 85 LGEIAARFY-DHPARALKLIGVTGTDGKSSLVHFLAQATGGAMLGTIGYGKLDALEPASH 143 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 TTP P+ + + L+ G+ V++E SSH L Q R+ ++ G FTNL RDH+D Sbjct: 144 ----TTPDPLRVQQYLARFRDAGIETVAMEVSSHALAQGRVAAVEYHIGVFTNLSRDHLD 199 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKF 276 YH+ + YF AK LF LP A+I DDA+ + ++ R H RV++V Q Sbjct: 200 YHRDMEDYFLAKASLFARPLPV---AVINIDDAHGRRLLDENRVH-PKTRVIAVSSQ-NH 254 Query: 277 IHLKKVCAIHNKQQV--------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 H + + + V T+ E + L F V N L A +A+G Sbjct: 255 AHPRAALTLRARDIVLSPDGIAYTLETEAEQVAIQSGLLARFNVDNLLNTAACLLALGTP 314 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A + L LH VPGR E +G + G +DYAHT +L IL+ +R G++ VF Sbjct: 315 FAAIPAKLAALHGVPGRAERIGLGN-GAAAIIDYAHTPAALANILQGVRAHVPGKLWCVF 373 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----N 444 GCGGDRD+GKRP+M + A AD ++TDDNPR+E+P I A+ + G+ G EK Sbjct: 374 GCGGDRDRGKRPLMAQAAEQYADAVVITDDNPRTENPADIIADSLRGM-GHREKAWIKRP 432 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R EAIR + L D +V+AGKGHE I+ + S D + +R L Sbjct: 433 REEAIRFVLPQLEAGDAVVIAGKGHEDYQILGTTKHHYS-DQETVRTWL 480 >gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium accolens ATCC 49725] gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium accolens ATCC 49725] Length = 511 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 242/477 (50%), Gaps = 38/477 (7%) Query: 32 EVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 EVS+ DS + G +F A+ G + G F+ A V++ A L D Sbjct: 23 EVSACGLDSASLPEGALFAALPGTRVHGAQFVGDTKA----GAVLTDAPGL-DHLRQANE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 PI+VVD+ R L A+ +YG HP L V G +G S + ++ ++G S Sbjct: 78 TRPIIVVDDIRAVLGPIAAEIYG-HPTRDLTVLGITGTSGKTTTSYLLEAGLLQAGHSVG 136 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T T I+ LTTP L + + + +GVTHV +E SSH L+ R+ G Sbjct: 137 LIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVMEVSSHALELGRVRGTNF 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHN 262 F+NL +DH+D+H T + YF+AK RLF E+ + A+I DD + + + + Sbjct: 197 AVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQR---AVICVDDEWGERLRGMVKD 253 Query: 263 AGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG V +V + + Q+V ++++G D+ F PLPGEF + NA +A Sbjct: 254 AGAPVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRLPLPGEFNIANAALAL 313 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377 G+ A+G D + L +E + VPGR E + RG VDYAH ++ +L +R Sbjct: 314 GMATAVGEDPQVFLTGVENV-AVPGRMERI---DRGQDFVAVVDYAHKPAAIAAVLDTLR 369 Query: 378 ---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 TSGR+ VV G GGDRD KRPIMG+ A AD+ +VTDDNPR+EDP IRA +I Sbjct: 370 LQLEGTSGRVGVVVGAGGDRDSTKRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIE 429 Query: 435 GI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G E+G+R AI ++ D ++V GKGHE +V GE+ + D Sbjct: 430 GARRAAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKGHEVGQLV--GERTLHFD 484 >gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis MC58] gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis CU385] gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis H44/76] Length = 492 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + V GT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKRP+MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R A+R A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAVRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alistipes sp. HGB5] Length = 485 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 155/455 (34%), Positives = 237/455 (52%), Gaps = 36/455 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G F A+ G + DGH FIP A+A+ ++A + ++ + V Sbjct: 30 DSRAVGPGDCFFAVRGTQNDGHDFIPAAVAK------GAAAVVCERLPEQTAADVVYVAV 83 Query: 96 DNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASF----VQQICQRSGLSS---F 145 + L+ A+ Y HP L +TGT+GK++ + V+ + ++GL S + Sbjct: 84 PDAAGALADMAAAFY-DHPSRALKLVGITGTNGKTTTVTLLYDLVRALGHKAGLISTVVY 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G + ++ TTP P+ L + ++ +G + +E SSH + Q R G+ Sbjct: 143 KVGERTVGATH------TTPDPVRLNAMMREMADEGCEYCFMECSSHAIVQERTRGLHFA 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F+N+ DH+DYH+T Y AK +LF + L KE+ A+ ADD + VM + A Sbjct: 197 GGIFSNITHDHLDYHKTFAEYIRAK-KLFFDSLSKEAFALTNADDKNGR-VMVQNTAAAI 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S+ F K+ +H + + ++G++ L G F YN L G + + Sbjct: 255 HTYSLRSMADF--RCKIVEMH-PDGMLLRIDGQEV--WVGLVGRFNAYNLLAVYGAAVLL 309 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--R 383 G D L LH V GRFE V ++ G VDYAHT ++LE +++ I I + + Sbjct: 310 GFDRGETLRAASMLHPVSGRFELV-RSANGVTAVVDYAHTPDALENVIRTIEEIRTPAQK 368 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PG--FI 440 +IVV GCGGDRD+ KRP M +IA+ AD A+ T DNPR E PE I ++ G+ PG F+ Sbjct: 369 LIVVCGCGGDRDRTKRPEMAQIAVRYADTAVFTSDNPRHESPEAILDQMAAGLEPGARFL 428 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R EAIRTA+ + D+L+VAGKGHET IV Sbjct: 429 RIADRAEAIRTAVMLSQPGDILLVAGKGHETYQIV 463 >gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacillus brevis NBRC 100599] Length = 492 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 231/463 (49%), Gaps = 27/463 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +++DSR ++ G++FV + G DGH F QA+ GA A++ S QD Sbjct: 22 EITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVL-----SEQDLDVP--- 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 I+ V +TR+ +++ A R++G + + + T + + +I + + Sbjct: 74 -ATIVKVPDTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQTGL 132 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I ++ + TTP I L ++ + + +E SSH L+ R+ G ++ Sbjct: 133 IGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEVSSHALELGRVRGCEIH 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 FTNL +DH+DYH+T + Y AK LF +L + A++ ADD S+ A Sbjct: 193 TAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASE---LYA 249 Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV++ G Q + K++ T+ L G+F VYNAL A Sbjct: 250 TVTPARVITYGIDQPADVRAKQIEITSKGTSFTVESFAGSARLNLRLMGKFNVYNALAAI 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +A GI + LE++ V GRFE V + VDY+HT +SLE L ++ Sbjct: 310 AVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAGQPFA-VLVDYSHTPDSLENALMTVKEF 368 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 G + + GCGGDRD+ KRPIM +IA AD+ ++T DNPRSE+P+ I +++ G+ Sbjct: 369 ARGNVFCIVGCGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQAILDDMLAGLSEV 428 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + +R EAI A+ + DV+++AGKGHET I+ + Sbjct: 429 APDRYTALTDRREAIAHAVSLAKPDDVILIAGKGHETYQIIKD 471 >gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton thalassium ATCC 35110] Length = 501 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 179/517 (34%), Positives = 267/517 (51%), Gaps = 37/517 (7%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 M+L+DLI + E+ +L + + + DSR + +FVAI G DGH + Sbjct: 1 MRLKDLINSIELVEIAGELH------EDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQY 54 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I QA+ A AIV ++ + S+ L V ++R+ L+ A R Y + + Sbjct: 55 INQAVEADAMAIVC------EEIPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKV 108 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175 + VTGT+GK++ ++ I + + + IG T I + + +R TTP + L + Sbjct: 109 IGVTGTNGKTTTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDR-TTPDALELHQLFH 167 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G V +E SSH L R GI+ FTNL DH+D+H + AY +AK LF+ Sbjct: 168 KMLEAGCRAVVMEVSSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFD 227 Query: 236 ELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV---GYQGKFIHL--KKVCAIHNK 288 L + + A+I ADD Y+++++K +A+ C V++ + I + K N Sbjct: 228 NL-SESAFAVINADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTING 286 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I+ + F G+F +YN + A +A G D ++ L K V GR + Sbjct: 287 TSAIIADDKNSMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQ 346 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIA 406 V + I VDY+HT ++LE L+ I + +GRII +FGCGGDRD+ KRP+MGKIA Sbjct: 347 VWSKDHRCAI-VDYSHTPDALENALQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIA 405 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 D +DI I+T DNPRSEDPEKI +I IH F +R AIR AI +L + DV + Sbjct: 406 EDNSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVAL 465 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDII----REILGLI 496 +AGKGHET + G+K D +II RE GLI Sbjct: 466 IAGKGHETYQEIA-GKKFHFDDKEIIESVFREQEGLI 501 >gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Odoribacter splanchnicus DSM 20712] Length = 487 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 164/512 (32%), Positives = 259/512 (50%), Gaps = 54/512 (10%) Query: 9 KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K EL+N +++ + +R+I + DSR I+ G +F+A G DGH FI +A+ +G Sbjct: 2 KKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPE---NILAV 120 A A+V + N P + +T + L + A Y +P ++ V Sbjct: 62 AVAVVCEQ----------LPENRPEEVTYIWTADTSEALGVMAGN-YWDNPSRELKLVGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 TGT+GK++ A+ + ++ + +G + G ST+ ++ + ++ TTP + + + L Sbjct: 111 TGTNGKTTTATLLYELVRLAGEKA---GLLSTVCNYIGEEKIPATHTTPDALSIQELLRR 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EASSH + Q R+ G+ F+N+ DH+DYH+T +AY AK F+ Sbjct: 168 MVDAGCRYCFMEASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDR 227 Query: 237 LLPKESPAIIYADDAYSKEVMK--RAH--NAGCRVLSVGYQGKFI--HLKKVCAIHNKQQ 290 LP + A+ ADD +++ RAH CR ++ + K I HL + ++ Sbjct: 228 -LPAHAFALTNADDKNGLVMLQNTRAHRYTYSCRTMA-DFTAKAIEKHLDGTLLRLDGEE 285 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V G+F YN L +G VLE++ L V GRFE + Sbjct: 286 VWTK-----------FTGDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETL- 333 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408 ++ G VDYAHT +++E +L I + ++I V G GGDRD+ KRP M A Sbjct: 334 ISTEGVMAVVDYAHTPDAVENVLSTICGLKGRDNQVITVVGAGGDRDKTKRPEMADAACR 393 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEK----GNRIEAIRTAIEMLNKQDVLV 463 +D I+T DNPRSEDPE+I +++ G+ GF + +R EAIR AI M +K D+++ Sbjct: 394 YSDHVILTSDNPRSEDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIIL 453 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 VAGKGHE V G K D ++IREI L Sbjct: 454 VAGKGHENYQEV-KGVKHHFDDKEVIREIFDL 484 >gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Rickettsiella grylli] Length = 493 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 235/458 (51%), Gaps = 23/458 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR I+ G +F A G K DG FI AI +GA AI+V ++++ ++S+ Sbjct: 20 IKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAAAILVEPD---ENYTIHLKSS 76 Query: 90 T-PILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSF 145 + PI+ + + L A+R YG +P L V TGT+GK+S F+ Q+ S Sbjct: 77 SIPIIALHHLTSQLGSLAARFYG-YPSRYLPVIGITGTNGKTSCTHFLADSLQKLQRSCG 135 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + +LTTP I L + L+ +Q V +E SSH L Q RL+G + Sbjct: 136 VIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVVMEVSSHRLAQKRLNGTEF 195 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNA 263 + TNL RDH+DYH+T AY AK FE LP ++ ADD Y++ + Sbjct: 196 SVAALTNLTRDHLDYHKTMDAYAKAKRSFFE--LPGVQHIVLNADDPYAQLWLTEFEKQL 253 Query: 264 GCRVLSVGY-QGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFP---LPGEFQVYNAL 316 S+ Q ++ H+ +V N+Q + ++ D L G F + N L Sbjct: 254 PISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDVFIENQFLMGAFNLSNLL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + + ++ A + + L +L GR + + + VDYAHT ++L+ +L+ + Sbjct: 314 LVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVKGK-AIVVVDYAHTPDALQQVLQAL 372 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R+ G++ +FGCGGDRD+GKRP+M IA + AD IVT+DNPR EDP +I +I G Sbjct: 373 RSHCRGQLYCLFGCGGDRDKGKRPLMAAIAEEGADHIIVTNDNPRYEDPFQIFQDIRQGF 432 Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G + R +AI A++ D++++AGKGHE+ Sbjct: 433 KGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKGHES 470 >gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium genitalium ATCC 33030] Length = 498 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 231/464 (49%), Gaps = 37/464 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S DS +++G +F A+ G + G F A A A A++ A D Sbjct: 27 VSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASDASAVLTDDAG--WDILRETGFE 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 P+LVV+ R L A+ +YG HP L V G +G S + ++ +G + Sbjct: 82 RPVLVVERVRDILGDVAAEIYG-HPTEHLTVIGVTGTSGKTTTTYLLESGLTAAGCAVGL 140 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T T I LTTP L + + + S+GVTHV +E SSH L R+DG K Sbjct: 141 IGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVVMEVSSHALVLGRVDGTKFA 200 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--- 262 A FTNL +DH+D+H T + YF AK LF+ + A++ DD + +++ +RAH+ Sbjct: 201 AAGFTNLSQDHLDFHPTMEDYFEAKAILFD----RAEKAVVCIDDEWGQKMTQRAHSPVT 256 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G S + + + A Q +T+ + G+D PLPG F + N +A L Sbjct: 257 VGVHNTSADCTARLDSVTESGA----QDITVRIGGQDISTRIPLPGAFNIANTALATALA 312 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI 379 ++GID + L+ L+ V PGR E V G+ +V DYAH ++ L ++R Sbjct: 313 DSVGIDPKVFLQGLDAARV-PGRMERVSV----GQPFVAVVDYAHKPAAVAAALDSLREQ 367 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 GRI VV G GGDRD KRP+MG A AD+ I+TDDNPR+EDP IRA + G Sbjct: 368 VDGRIGVVVGAGGDRDHSKRPLMGAEAATRADLVIITDDNPRTEDPAAIRAAVKQGAESV 427 Query: 440 I--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I E +R +AI + D ++V GKGHE I+ Sbjct: 428 IDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGKGHEVGQII 471 >gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rettgeri DSM 1131] Length = 471 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 165/486 (33%), Positives = 240/486 (49%), Gaps = 44/486 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +F+AI G++ DG +IPQAIAQG A++ + + P++ + Sbjct: 4 DSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ LS A Y P + + G +G + + Q I Q + +G TS + Sbjct: 64 NDLNNRLSALAGEFY-HQPSAKMKLVGVTGTNGKTTTTQLIAQWAQ----GLGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L +Q T ++E SSHGL Q R+ ++ A Sbjct: 119 TVGNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH ++Y AK LF K II ADDA + ++R A C V Sbjct: 179 VFTNLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQ--IINADDAIGLKWLQRLPQA-CAV 235 Query: 268 -----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320 + +QG + LK + ++ + TI + + DF PL G F V N LVA Sbjct: 236 TMENKIPQDWQGPW--LKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + +L L V GR E ++ + VDYAHT ++LE L R Sbjct: 294 TLLMMDYPLNKLLAATSSLSPVCGRMEVFSAPNKP-TVVVDYAHTPDALEKALAAARLHC 352 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG----- 435 G++ VFGCGGDRD+GKRP+MG A + AD ++TDDNPRSEDP I +I+ G Sbjct: 353 KGQLWCVFGCGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLDSS 412 Query: 436 ----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIR 490 IPG R EA+ I + DV+V+AGKGHE I+ G++K+ D + Sbjct: 413 RALAIPG------RPEAVTNTILQASPDDVIVIAGKGHEDYQII--GQRKLDYSDRLTVA 464 Query: 491 EILGLI 496 +LG+I Sbjct: 465 RLLGVI 470 >gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oceanobacillus iheyensis HTE831] gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase 1; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 1 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831] Length = 493 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 239/481 (49%), Gaps = 48/481 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR I +G FV I G DGH ++ QA+ GA AI S ++++ Sbjct: 23 EITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAIFTSKPL-MKEYGV---- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 PI+ V++T + L++ A + Y +P ++ VTGT+GK++V + +I + + Sbjct: 78 --PIIQVEDTNRALAMLAVKYY-DYPTKHFPLIGVTGTNGKTTVTYLLDKIFEYHQKKAG 134 Query: 146 QIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG +F N TTP+ + L K + + V +E SSH LD R+ G Sbjct: 135 VIGTIQVKIGEETFPIVN--TTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVYGC 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVM 257 FTNL +DH+DYHQ Q Y AK LF +L KE AII DD+ S ++ Sbjct: 193 DYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAIINDDDS-SSHLL 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------G 308 KR+ S KK I K + ++ G F PL G Sbjct: 252 KRSTAQHVITYSC---------KKEATIMAKD-IELTASGIRFKLHSPLGNITIQSRLMG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F VYN L A+ IA + ++ + LE + V GRFE + + + VD+AHT +S Sbjct: 302 MFNVYNMLAASAAAIASKVPLNVIQQALESIEGVNGRFEPI-VEGQNYSVIVDFAHTPDS 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ I+ + VV GCGGDRD+ KRP+M ++AL+ AD A+ T DNPR+EDP+ I Sbjct: 361 LENVLQTIKDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAI 420 Query: 429 ----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 AE+ + +R E I AI+ K D++++AGKGHET I+ G K Sbjct: 421 LDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKGHETYQII--GHTKYDF 478 Query: 485 D 485 D Sbjct: 479 D 479 >gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 491 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 223/455 (49%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR ++ G FVAI G G F+ QA A GA A++ F Sbjct: 17 QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67 Query: 89 NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 P+ + V R L + A + +G+ + ++ VTGT+GK+S + Q G Sbjct: 68 GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L +G V++E SSH LDQ R+D Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF K A++ DD + + + A Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFA-AL 244 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN ++V+G+ PL G F V N L Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAV 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459 >gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Dysgonomonas gadei ATCC BAA-286] Length = 483 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 162/508 (31%), Positives = 256/508 (50%), Gaps = 40/508 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+DL+ + I ++ E +I + +DSR AG F+A+ G + DGH + Sbjct: 1 MKLKDLL--------KGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQY 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117 I A+ GA+ ++ Q+ T R + V ++ A+ YG + Sbjct: 53 INNALDLGAKVVI------HQEKVDTSREGITYIKVKDSADAAGKIATLWYGDPSAKLKL 106 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK++ A+ + ++ ++ G ++G ST++++ TTP P+ L + Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKFG---NKVGLLSTVANYIDGTVYHATHTTPDPLSLNEM 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + G + +E SSH + Q R+ G+K G FTN+ +DH+DYH+T Y AK ++ Sbjct: 164 LAKMVDAGCEYAFMEVSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAK-KM 222 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F + LP+ + A+ ADD + VM + A SV F I K Sbjct: 223 FFDNLPETAFALTNADDK-NGAVMLQNTKAKKYTYSVKTLADF-----KAKIIEKHFDGT 276 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +VE + + G F VYN L G + +G D L L L V GRFE + + Sbjct: 277 AVEFNNKELQVQFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPE 336 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 I VDYAHT ++L +L+ I + +GR+I V GCGG+RD+ KRPIM + A+ L+D Sbjct: 337 NYTAI-VDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSD 395 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-----RIEAIRTAIEMLNKQDVLVVAG 466 I+T DNPR E+P+ I ++ G+ K R +AI+TA + + DV+++AG Sbjct: 396 QVILTSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAG 455 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494 KGHE V G K D +++R I G Sbjct: 456 KGHEDYQDV-KGVKHHFDDREVVRNIFG 482 >gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira interrogans serovar Lai str. 56601] gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira interrogans serovar Lai str. 56601] Length = 504 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 177/533 (33%), Positives = 260/533 (48%), Gaps = 68/533 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAI--VGNKEDG 56 MKL L+ K FPE+ +L FP +I + SDSR IF +G+K+ Sbjct: 1 MKLTSLLLK-FPEI--KLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKK-- 55 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115 FI A A + ++ + + L D + S+ L + + + AS L G HP Sbjct: 56 KEFISNAKA--SLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLG-HPS 112 Query: 116 ---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171 +I+AVTGT+GK+S+ + + + + G++ IG D TTP L Sbjct: 113 KDLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLN 172 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +G+T V +EASSHGL R++GI + AG FTNL +DH+D+H + YF +K Sbjct: 173 LILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKF 232 Query: 232 RLFE------------------------ELLPKESPAIIYA-DDAYSKEVMKRAHNAGCR 266 RLFE ++L + +IYA DD Y K + Sbjct: 233 RLFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISD------- 285 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +S+ QG V + Q+ IS L G F V N +A I IG Sbjct: 286 -ISLNLQGT----SYVLGLPGNQERKISTN---------LLGSFNVRNTALAFLTGIGIG 331 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +D + LEK+ +PGRF+ + + R VDYAHT ++LE I++++R +I Sbjct: 332 LDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLIT 391 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI---EK 442 +FGCGGDRD+ KRP M +IA +L+D I+T DNPR+E PE I EI G GFI + Sbjct: 392 LFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLRE 451 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R +AI I L + L+VAGKGHE I+ EK+ D + +++ GL Sbjct: 452 VDRAKAIVEGISCLPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 503 >gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 471 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 160/463 (34%), Positives = 235/463 (50%), Gaps = 35/463 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +F+A+ G++ DG +IPQAIAQG AI+ + +D P++ + Sbjct: 4 DSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + LS A R Y P L + G +G + + Q + Q + L +G TS + Sbjct: 64 SQLNERLSALAGRFY-HQPSQQLRLVGVTGTNGKTTTTQLLAQWAKL----LGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + LS L QG T ++E SSHGL QHR+ ++ A Sbjct: 119 TVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAAS 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH + Y AK L+ + AI+ ADD + + + +A Sbjct: 179 VFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVS 236 Query: 268 L----SVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + G++ LK ++ TI S GK + L G F V N L+A Sbjct: 237 MEDHINPNCHGRW--LKATAVNYHDSGATIQFDSSWGKG-EIESRLMGAFNVSNLLLALA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A+G A +L+ +L V GR E + + VDYAHT ++LE L+ R Sbjct: 294 TLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPA-VVVDYAHTPDALEKALQAARLHC 352 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 SG++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + G + Sbjct: 353 SGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---LAGML 409 Query: 441 EKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G R +A+ A+ + DV++VAGKGHE IV N Sbjct: 410 DAGQAKVMEGRAKAVTNAVMQAKENDVVLVAGKGHEDYQIVGN 452 >gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Citrobacter youngae ATCC 29220] Length = 471 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 235/474 (49%), Gaps = 20/474 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +G +FVA++G++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + E + V T + Q CQ G +S +G Sbjct: 64 SQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---- 268 RDH+DYH + Y AK L+ + AI+ ADD + + + +A + Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLYSTHHCGQ--AIVNADDEVGRRWLAKLPDAVAVSMEDHI 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + G+++ V + + + + + L G F V N L+A +A+G Sbjct: 242 NPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLALGYP 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A +L+ +L V GR E + + VDYAHT ++LE L+ R +G++ VF Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKT-TVVVDYAHTPDALEKALQAARLHCTGKLWCVF 360 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----- 443 GCGGDRD+GKRP+MG IA AD+ +VTDDNPR+E+P I +I + G ++ G Sbjct: 361 GCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDI---LAGMLDAGRAKVM 417 Query: 444 -NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ AI + DV++VAGKGHE IV + S + R +LG+I Sbjct: 418 EGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLDYSDRVTVAR-LLGVI 470 >gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9215] gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9215] Length = 514 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 142/492 (28%), Positives = 248/492 (50%), Gaps = 37/492 (7%) Query: 13 ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG F +AI GAEA Sbjct: 8 KLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 ++ SA ++ +I +++ DN + + + + + VTGT+GK+++ Sbjct: 68 IIGSAA--KERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + ++ G + G + F++ TT L K L+ +E Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246 SSH + Q R+ G + A FTNL +DH+DYH ++YF K +LF L K+ +++ Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVL 245 Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293 DD + S ++ KR+ ++ ++ KF C H ++ Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--- 302 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352 PL GEF + NA+ A + + + + ++ PGR E + + Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDD 357 Query: 353 ---SRG-GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 SR + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + Sbjct: 358 SDVSRSLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 L+D +T DNPRSE+P+KI +I+ GI + +R +AI +I+ NK+D++++A Sbjct: 418 LSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIA 477 Query: 466 GKGHETVHIVTN 477 GKGHE I+ + Sbjct: 478 GKGHEDYQILND 489 >gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii SH145] Length = 498 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 238/469 (50%), Gaps = 46/469 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W ++ DSR ++ G IF+A+ + E F +A+ QGA A++ Sbjct: 17 WMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKTVQFAQKALEQGALAVI---------- 66 Query: 83 SATIRSNTPILVVDNTRKFLSLFASR-LYGKHP---ENILAVTGTSGKSSVASFVQQICQ 138 S T +P LVV + R + + + L P ILAVTGT+GK++++ V + Sbjct: 67 SETEPDVSPNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNGKTTISRLVAEFIM 126 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G T I + + TT + L AL + G S+EASSHGL+Q Sbjct: 127 LQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEFASIEASSHGLEQG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL+G + ++NL RDH+DYH T QAY AK LF A+I DD +++ ++ Sbjct: 187 RLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFR--FESLKVAVINIDDEHAQIML 244 Query: 258 KRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PL 306 A N A ++L+ K A + Q + S+ G F PL Sbjct: 245 DAAKNNPAQPKILTYSTTQK--------ADYQVQDIQYSISGATFKLKTASAEYIVNSPL 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHT 365 G F + N + + + G + ++ + +L PGR + + G R++V DYAHT Sbjct: 297 LGHFNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVL---RDGERLFVVDYAHT 353 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ S + VFGCGGDRD+GKRP+M + ALD +DIA++T DNPR+EDP Sbjct: 354 PDALTQVLVTLKRHVSQNLWAVFGCGGDRDRGKRPLMTQAALDGSDIAVLTSDNPRTEDP 413 Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I A++ +GI + E +R EAI+ A++ D++V+AGKGHE Sbjct: 414 AQIFADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIAGKGHE 462 >gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 506 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 177/533 (33%), Positives = 260/533 (48%), Gaps = 68/533 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAI--VGNKEDG 56 MKL L+ K FPE+ +L FP +I + SDSR IF +G+K+ Sbjct: 3 MKLTSLLLK-FPEI--KLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSIGSKK-- 57 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115 FI A A + ++ + + L D + S+ L + + + AS L G HP Sbjct: 58 KEFISNAKA--SLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLG-HPS 114 Query: 116 ---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171 +I+AVTGT+GK+S+ + + + + G++ IG D TTP L Sbjct: 115 KDLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLN 174 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +G+T V +EASSHGL R++GI + AG FTNL +DH+D+H + YF +K Sbjct: 175 LILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKF 234 Query: 232 RLFE------------------------ELLPKESPAIIYA-DDAYSKEVMKRAHNAGCR 266 RLFE ++L + +IYA DD Y K + Sbjct: 235 RLFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISD------- 287 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +S+ QG V + Q+ IS L G F V N +A I IG Sbjct: 288 -ISLNLQGT----SYVLGLPGNQERKISTN---------LLGSFNVRNTALAFLTGIGIG 333 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +D + LEK+ +PGRF+ + + R VDYAHT ++LE I++++R +I Sbjct: 334 LDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLIT 393 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFI---EK 442 +FGCGGDRD+ KRP M +IA +L+D I+T DNPR+E PE I EI G GFI + Sbjct: 394 LFGCGGDRDRTKRPKMARIAEELSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLRE 453 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +R +AI I L + L+VAGKGHE I+ EK+ D + +++ GL Sbjct: 454 VDRAKAIVEGISCLPEGGCLLVAGKGHEEYQIIGK-EKRHFSDVEEVQKAFGL 505 >gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301] Length = 488 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 235/465 (50%), Gaps = 42/465 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + +++DSR +QAG +F+A G DG Q I Q +A + + + F+ Sbjct: 9 KSFTSITADSRKVQAGSLFLAYPGLHNDGR----QYIGQAVQAGAAAVVWEQEGFTWNAD 64 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144 L V + ++ + A+ Y ++P + ++ VTGT+GK+SV+ ++ Q G + Sbjct: 65 WQVSNLAVQDLKQQVGGIAAEFY-QNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKT 123 Query: 145 FQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G AQ TTP I L L+ Q V++E SSHGLDQ R++G+ Sbjct: 124 AVLGTIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVA 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMK--R 259 TNL RDH+DYH+T +AY AK +LF E L+ AI+ DDA+ K ++ Sbjct: 184 FDVAVLTNLSRDHLDYHETMEAYAAAKQKLFAWEGLIT----AIVNTDDAFGKSLVSALN 239 Query: 260 AHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYN 314 A + C + S QG + L +T+ + L P G F YN Sbjct: 240 AQDKPCLTYGLTSADVQGSDLKLHDTG-------LTMQINTPQGHALLSAPVLGRFNAYN 292 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEM 371 L +A+ + LE + K+ V GR + G GG + +DYAHT ++LE Sbjct: 293 VLAVLATLLALKVSLPDSLEAIAKIKPVLGRMQQFG----GGDLPLVVIDYAHTPDALEK 348 Query: 372 ILKNIR-----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L ++ +S ++I VFGCGGDRD GKRP+MG IA LAD VT DNPRSE+P Sbjct: 349 VLSTLKEQIDLAASSVKLICVFGCGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPA 408 Query: 427 KIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A ++ + G++ +R AIR AI+ N D+++VAGKGHE Sbjct: 409 AIIAAVVSEMKAGYVVDADRANAIRAAIQGANSGDIVLVAGKGHE 453 >gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 515 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 247/483 (51%), Gaps = 33/483 (6%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F ++ + + + DSR + F+A+ G+ DG FIPQA++ GA+ I+ Sbjct: 19 LAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAVSLGAKVIIAECDT 78 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQ 135 + ++R + I+ + LS A+ Y I+ VTGT+GK+S Q Sbjct: 79 QQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTGTNGKTSTVQLTSQ 138 Query: 136 IC----QRSG----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + +R+ L S I T +SF + TTP I + K ++ + V V++ Sbjct: 139 LAALLNKRAASIGTLGSGVISCTGECASFGETIN-TTPDAITMHKLMAQFAQDNVKQVAL 197 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L Q R+ +K+ TNL RDH+DYH T QAY AK + + P+ A++ Sbjct: 198 EVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILTQ--PELKFAVLN 255 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL- 303 ++ SK+ + + N V+ G + + L +KVC ++V S +G F + Sbjct: 256 GNEIESKQWLAQLPNTVTPVV-YGIDDESLLLGNAQKVCL---AKEVEYSSQGCRFTLVS 311 Query: 304 --------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 L G F ++NAL A + +G + + ++L V GR E ++ + Sbjct: 312 SWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF-SDEKS 370 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT ++L+ L +R + GR+ V+FGCGGDRD+GKR +MG+ A AD+ ++ Sbjct: 371 PTVVVDYAHTPDALKQALLALRQHSEGRLFVIFGCGGDRDKGKRSLMGEAAETCADVVMI 430 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T+DN RSEDP I ++I+ G P I+ + +R AI A+ +D+++VAGKGHE Sbjct: 431 TNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATPKDIILVAGKGHEDY 490 Query: 473 HIV 475 I+ Sbjct: 491 QII 493 >gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Thermodesulfobium narugense DSM 14796] Length = 487 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 155/490 (31%), Positives = 239/490 (48%), Gaps = 42/490 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P ++ ++ +S +S+ I+ G++F AI GN+ DGH FI +A A VV Sbjct: 21 YPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFIQEAFKNKAIGAVVEKDV--- 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQIC 137 D+ TI+ + + + T S ++ +P L +VTGT+GKS++ + Sbjct: 78 DYVNTIKVRSTLQALRET--------SLVFYDYPFKKLFLGSVTGTNGKSTITWILSHAV 129 Query: 138 QRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + SF +G + + + TTP + + L + + +E SSH L Sbjct: 130 NKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQLDMKYGFLEVSSHALK 189 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSK 254 RL GI+ A FTNL RDH+D+H + + YF K LF KE+ +I DD Y Sbjct: 190 LGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLKENAFVVINIDDLYGI 249 Query: 255 EVMK-----RAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPG 308 + R + + GKF + + VC + Q+V P+ G Sbjct: 250 NLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLLVEGQKV-----------FAPIYG 298 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F N L A +GI+ + + L GR E V T + +I++DYAHT + Sbjct: 299 RFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGRLECVQT--KPFKIWIDYAHTPDG 356 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +LK++R + +II+VFG GG+RD+GKRPIMG+IA +D I+T DNPR EDP I Sbjct: 357 LEKVLKSLRDMVEKKIILVFGAGGNRDKGKRPIMGRIAAQFSDYTIITSDNPRYEDPMSI 416 Query: 429 RAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 EI G F +R EAI+ AIE+ D +++AGKGHE + NG K Sbjct: 417 IDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIIIAGKGHEDYQEI-NGVKYPF 475 Query: 484 VDCDIIREIL 493 D ++++E++ Sbjct: 476 SDKEVVKELI 485 >gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [gamma proteobacterium IMCC1989] Length = 556 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/510 (31%), Positives = 253/510 (49%), Gaps = 69/510 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N +S DSR I G +FVA+ G G +FIP AI +GA AI+ SA + D R Sbjct: 35 VNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAIL--SATTASDVFVEYRDE 92 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + ++LS A Y HP ++ +TGT+GK+S A Q+ +G + Sbjct: 93 IPVIFIPHLEQYLSEIAGNFY-HHPTKKVPVIGITGTNGKTSCAQIYAQLSAFNGSAVGV 151 Query: 147 IGPT---------------------------STISSFAQDNR--------------LTTP 165 IG S+ +S A +R +TTP Sbjct: 152 IGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQSRAGQPGYSLSLVSTGMTTP 211 Query: 166 SPIY-------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 I L + + ++ G+ V +E SSHGL+Q R+ + + + FTNL DH+D Sbjct: 212 DAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHDHLD 271 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKF 276 YH AY NAK +LFE +P + AI+ DD +S E+ + + RV+S + Sbjct: 272 YHGDMVAYGNAKAKLFE--MPTINLAIVNLDDEFSHELTTKIAST-VRVISYSIDNANAD 328 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 ++L + H++ + + + PL G F + N L+A + + + V+ Sbjct: 329 LYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSN-LLAVLSVFSQQQNFSQVVASA 387 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 + L + GR E V N G ++ VD+AHT ++L+ +L+ + G + VFGCGGDRDQ Sbjct: 388 QYLQPISGRMESV-ENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGGDRDQ 446 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP+M +A AD +VT+DNPRSE+P I +++ G IE+ R EAIR A Sbjct: 447 SKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFSSNNHCVIEE--REEAIRFA 504 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I D++V+AGKGHE+ ++ G++K+ Sbjct: 505 IHHAKIGDMVVIAGKGHESYQLI--GDQKI 532 >gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 499 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 231/468 (49%), Gaps = 38/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 29 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 258 FKKITSA--EVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 316 LAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTLDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNP SEDP+ I +I Sbjct: 375 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPCSEDPQAIMKDI--- 431 Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF++ N R AI AI M + D++++AGKGHET I+ Sbjct: 432 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 479 >gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 169/496 (34%), Positives = 249/496 (50%), Gaps = 48/496 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+ G++ DG +IPQAIAQG A+V + ++ Sbjct: 20 RVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIAQGVAAVVAQAEGEAEEGEIREL 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + ++ LS A R Y + P + L +TG +G + + + Q + L + Sbjct: 80 HGVPVIYLHRLQERLSALAGRFY-QQPLHALRLTGVTGTNGKTTTTHLLAQWAQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TS + + L TT SPI + + L L QG T ++E SSHGL QHR+ Sbjct: 135 GETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + A FTNL RDH+DYH Y AK RLF EL + II ADDA + +++ Sbjct: 195 SILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELDVGQR--IINADDATGRRWLQK 252 Query: 260 AHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKDFDFL---------FPLP 307 A ++V G ++ +CA +V G D F L Sbjct: 253 LPQA----IAVAVSGTLPPERQGDWLCA----GEVRYHARGADIPFRSSWGEGIVHCQLI 304 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GEF V N L+A +A+G +L+ +L + GR E R + VDYAHT + Sbjct: 305 GEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICGRMEVFHAEDRP-TVLVDYAHTPD 363 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L R G++ VFGCGGDRD+GKRP+MG IA AD I+TDDNPR E + Sbjct: 364 ALEKALTAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIITDDNPRGEAAQD 423 Query: 428 IRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I +I G+ ++ G R EA+ +AI D+++VAGKGHE I+ G+++ Sbjct: 424 IINDIKSGL---LDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKGHEDYQII--GKQR 478 Query: 482 MSV-DCDIIREILGLI 496 + D + +LG++ Sbjct: 479 LDYSDRTTVARLLGVM 494 >gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterobacter sp. 638] gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638] Length = 495 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 235/466 (50%), Gaps = 29/466 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E+ DSR +G +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDDATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + + LS A R Y P + L + G +G + + Q + Q + L + Sbjct: 80 HGVPVIYLSQLNERLSALAGRFY-HEPSDQLRLVGVTGTNGKTTTTQLMAQWAQL----L 134 Query: 148 GPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G T + + L TT S + + LS L+ QG T ++E SSHGL QHR+ Sbjct: 135 GETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFAAMEVSSHGLVQHRV 194 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K A FTNL RDH+DYH + Y AK L+ + AII ADD + + + Sbjct: 195 SALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYSTHHCGQ--AIINADDEVGRRWLAK 252 Query: 260 AHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +A + + G+++ V + + + + + L G F V N Sbjct: 253 LPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFASSWGEGEIESRLMGAFNVSNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+A +A+ + ++ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 313 LLALATLLALDYPLSELVNTGARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQA 371 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R +G++ VFGCGGDRD+GKRP+MG IA ADI +VTDDNPR+E+P I +I Sbjct: 372 ARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDI--- 428 Query: 436 IPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G ++ G+ R EA+ AI + DV+++AGKGHE IV Sbjct: 429 LAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKGHEDYQIV 474 >gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium 2_1_46FAA] Length = 494 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 246/485 (50%), Gaps = 40/485 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I +V+ DSR ++ +FV I G+ DG L++ +A+ +GA AI L D + Sbjct: 20 EPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVEKGAVAI-------LADRRIEV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLS 143 ++V+N R+ L+ AS YG+ P + V G +G A + I ++SG Sbjct: 73 PREVTFILVENVRETLAKIASVFYGE-PSKEMTVIGITGTKGKTTTAYMIYHILEQSG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +++G TI + R+ T+P + + + L + Q +E SS GL HR Sbjct: 130 -YKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEMVLQKCDIAVMEVSSQGLKLHRT 188 Query: 200 DGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 D I+ G FTNLG+DHI H+ + Y N K +LF + I D Y +E+ Sbjct: 189 DEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLF----SQSDFGIANMDSPYWREMF 244 Query: 258 KRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVY 313 RA+ C V +VG+ + + + V + + + GKD D + + G F +Y Sbjct: 245 LRAN---CDVETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKDRGDIVLSMAGRFNIY 301 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N+L A +C +G+ + + L K V GR E + TN +G I +DYAH + SL+ IL Sbjct: 302 NSLCAIAVCRRLGVSFENIRQSLCKTQV-KGRVEQISTN-KGTIILIDYAHNAMSLQSIL 359 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + + + RII +FGCGG+R + +R MGK++ LAD I+T DNPR E+P +I +EI Sbjct: 360 EMVHSYRPHRIICIFGCGGNRAKERRYEMGKVSGALADFTIITSDNPRYENPLQIMSEIR 419 Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS---VDC 486 G+ ++E NR EAIR I+ D++V+AGKGHE + M+ V C Sbjct: 420 EGVEDGNGNYLEICNREEAIRYGIKYAGAADIIVIAGKGHEEYQEIEGIRYHMTDREVVC 479 Query: 487 DIIRE 491 II E Sbjct: 480 HIIDE 484 >gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae DSM 12163] Length = 495 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 158/486 (32%), Positives = 237/486 (48%), Gaps = 30/486 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR + +FVAI G+ DG FIPQAIAQG A++ + +D Sbjct: 19 ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y + P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 134 LGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y AK LF E + AII ADD + ++ Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV +V S + + L G F V N Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ + +L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP I +I+ Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 430 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G R +A+ + + D+++VAGKGHE I+ + S D D Sbjct: 431 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 486 Query: 489 IREILG 494 + +LG Sbjct: 487 VARLLG 492 >gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Erwinia pyrifoliae Ep1/96] Length = 490 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 158/486 (32%), Positives = 237/486 (48%), Gaps = 30/486 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR + +FVAI G+ DG FIPQAIAQG A++ + +D Sbjct: 14 ERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGQIVE 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R Y + P L + G +G + + Q + Q + L Sbjct: 74 MHGVPVIYLAQLSQRLSALAGRFY-QQPGEKLKLIGVTGTNGKTTTTQLLAQWAQL---- 128 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 129 LGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLVQHR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y AK LF E + AII ADD + ++ Sbjct: 189 VAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAE--HQVGQAIINADDEVGRRWLE 246 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV +V S + + L G F V N Sbjct: 247 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNVSN 306 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ + +L V GR E + + VDYAHT ++LE L Sbjct: 307 LLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 365 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPRSEDP I +I+ Sbjct: 366 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAIVRDILS 425 Query: 435 GIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++ G R +A+ + + D+++VAGKGHE I+ + S D D Sbjct: 426 GL---LDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-DRDT 481 Query: 489 IREILG 494 + +LG Sbjct: 482 VARLLG 487 >gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 242/477 (50%), Gaps = 29/477 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTP 91 V+ D+ + G +F A+ G+ G + A+A+GA A++V A +L + Sbjct: 28 VTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAVAVLVDQQAPTLP----AAMGDVC 83 Query: 92 ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +L V + RK ++ ASR +G+ +++A+TGT+GK+SV+ + + + + ++G Sbjct: 84 VLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGKTSVSYMTESVLRLA--ERARVGV 141 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 T S D + L+TP L L ++ + V +EA+S GL HRLD Sbjct: 142 IGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRACGSVVLEATSMGLLTHRLDRT 201 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL +DH+D H T + Y +AK+RLF+ L + A++ ADD + K Sbjct: 202 FIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPVGAGIRKLMPG 258 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A V + G + + + + T+ +G+ + P PG F V NAL Sbjct: 259 A---VTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYPAAIPSPGRFSVSNALATVAA 315 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 C +G A ++ LE++ +PGRFE + S G + VDYAH+ +SL +L IR Sbjct: 316 CHLLGHGLAGLVHALERMPQIPGRFERLQI-SGGTSVIVDYAHSPDSLNKVLTTIRGFAR 374 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----P 437 GR+I VFGCGGDRD KR MG IA +D+ ++T DNPR EDPE I +I GI Sbjct: 375 GRVITVFGCGGDRDTTKRADMGAIAGTHSDVCVLTSDNPRYEDPEGILDQIAKGIVSTGT 434 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 F +R AI A+ D++++AGKG E H GE D +RE++G Sbjct: 435 PFERLTDRRSAIAAALAEAGPDDIVLIAGKGSEP-HQSVRGELLPFSDMATVRELIG 490 >gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus ATCC 10987] Length = 492 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 152/478 (31%), Positives = 231/478 (48%), Gaps = 58/478 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----MPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L + A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL---------- 303 K+ +A V++ G IHN+ V I++ K FL Sbjct: 251 FKKITSA--EVITYG-------------IHNRADVQAKNITLSPKGIRFLVSSFNGEIEV 295 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F VYNAL A + + GI + + L L + GR E + N + + VDY Sbjct: 296 NLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDY 354 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE +L I + G++I VFGCGGDRD KR IMG IA +D +T DNPRS Sbjct: 355 AHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGGIAGSYSDFVFITSDNPRS 414 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I +I G ++E AI AI M + D++++AGKGHET I+ Sbjct: 415 EDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIVLIAGKGHETYQIL 472 >gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Ruminococcus flavefaciens FD-1] Length = 479 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/516 (31%), Positives = 249/516 (48%), Gaps = 59/516 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL+ + + + +I ++ D+R + G +FV + G DGH Sbjct: 1 MKLYDLLENNAETKLGNI----------EITSITDDTRKVAEGCLFVCVKGGSFDGHTAA 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117 + + +GA A+V L D ++ DN+R+ + S +G HPE ++ Sbjct: 51 AEMLEKGAAAVVCEHDLGLGDRQ---------ILTDNSRRLYGMMCSAWFG-HPEKKLHM 100 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+++ + ++ I ++G + G TI + D + TTP L Sbjct: 101 IGVTGTNGKTTITNVIKHILMKNG---HKTGLVGTIQNEIGDEIVHTENTTPMAYDLMAL 157 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + G +V +E SS GL Q+R+ FTNL +DH+DYH+ + Y+ AK L Sbjct: 158 LDRMVKAGCEYVVMEVSSFGLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKML 217 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F+ A++ DD Y K + GC S +G CA + + I Sbjct: 218 FDIC----DCALVNIDDEYGKRLYGEI---GCEKQSFSVKG--------CADYTADGIKI 262 Query: 294 SVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 G F F +PG F V N A +C+ G+ ++ +E+ + V G Sbjct: 263 KSTGSSFWFCKGGKSHLVKCRMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKG 322 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + T R + DYAHT ++LE IL+++R T R+I +FGCGG+RD KRP M Sbjct: 323 RCEVIPT-GRDFTVICDYAHTPDALENILRSVREYTDNRLICLFGCGGNRDAAKRPKMAA 381 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460 A AD IVT DNPR+EDPE I EI+ G+ + +R EAI A+++ K D Sbjct: 382 AAAKFADRLIVTSDNPRNEDPELIIKEILTGLEDSDIPYDVVVDRREAIYHALKIAEKGD 441 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 ++V+AGKGHE I+ E + +I+ E L L+ Sbjct: 442 IIVLAGKGHEDYQILAGMEHIHFDEREIVAEGLKLL 477 >gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas perforans 91-118] Length = 491 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 150/455 (32%), Positives = 223/455 (49%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR ++ G FVAI G G F+ QA A GA A++ F Sbjct: 17 QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67 Query: 89 NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 P+ + V R L + A + +G+ + ++ VTGT+GK+S + Q G Sbjct: 68 GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L +G V++E SSH LDQ R+D Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF K A++ DD + + + A Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFA-AL 244 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN ++++G+ PL G F V N L Sbjct: 245 DPALRAIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAV 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459 >gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora ATCC BAA-2158] Length = 495 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 158/491 (32%), Positives = 238/491 (48%), Gaps = 36/491 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVAI G+ DG FIPQAIAQG A++ + + D Sbjct: 19 ERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R + + P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLAQLSQRLSALAGRFH-QQPGAKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAMEISSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y +AK LF E + AII ADD + ++ Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINADDEVGRRWLQ 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV V + D L G F V N Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ + + +L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++TDDNPR E+P I +I+ Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRGEEPAAIVGDILS 430 Query: 435 G---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G IPG R +A+ + + D+++VAGKGHE I+ + S D Sbjct: 431 GLLDAGRARVIPG------RAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-D 483 Query: 486 CDIIREILGLI 496 D + +LG++ Sbjct: 484 RDTVARLLGVL 494 >gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha275] Length = 492 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + I T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8802] gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802] Length = 501 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 157/493 (31%), Positives = 251/493 (50%), Gaps = 19/493 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KLQDL+ K P + I P +R++ + ++S Q G +F+ + G + DG F Sbjct: 2 VKLQDLLAK-VPTI---QEIPPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFW 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ GA A +++ + F T + +++ ++ + A+ Y + + + Sbjct: 58 TSALEAGAVAAIITPEAAAH-FPPT--PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMI 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ +S + +G T F Q TTP + L + L+ Sbjct: 115 GVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-E 236 G + +E SSH L Q R+ G + F+NL +DH+DYH+ + YF+AK LF + Sbjct: 175 VDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPD 234 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L K AII DDAY + +++ SV + + T+ Sbjct: 235 YLAKR--AIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355 F PL G+F + N L A + +G+D V+ L + VPGR E V ++ + Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQE 352 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+I+ LAD+++V Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP + +R AI AI+ D +++AGKGHE Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDY 472 Query: 473 HIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 473 QIL--GTEKIHFD 483 >gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella kingae ATCC 23330] Length = 491 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 224/452 (49%), Gaps = 19/452 (4%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR IQ +F+A G DG +I AI +GA A V A DF P Sbjct: 28 SDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGA-AFVYWDADG--DFVWNENWQIPNQP 84 Query: 95 VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQIGP 149 + R+ + A+ +YG NI+ VTGT+GK+S+ ++ Q I + + IG Sbjct: 85 IAELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAI-IGT 143 Query: 150 TSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 A Q+ TTP P+ + L G +H+++E SSHGL Q R++G+ Sbjct: 144 VGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTAI 203 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH + + Y AK RLF AII +DD + +++ + V Sbjct: 204 FTNLTRDHLDYHNSMEEYGEAKARLFH--WQGLQNAIINSDDEFGAKLVAELKQSSLHVY 261 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S G+ + +K + N Q + I ++ + L G F N A G A G Sbjct: 262 SYGFN-EHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEG 320 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRI 384 L+ L ++ GR + + ++ + VDYAHT ++LE L +R I ++ Sbjct: 321 YAFQAALKALAQIRAATGRMDCIIRENK-PLVVVDYAHTPDALEKALSTLREIQQPESQL 379 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKG 443 VFGCGG+RD+GKRP+MG +A AD +VT DNPR EDP I A+I+ +P + + Sbjct: 380 WCVFGCGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALVQV 439 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R AI I QD++++AGKGHET V Sbjct: 440 DRQTAIEQTIAQAAPQDIVLIAGKGHETYQDV 471 >gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 495 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 152/454 (33%), Positives = 219/454 (48%), Gaps = 23/454 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR + G FVAI G G F+ QA A GA A++ F Sbjct: 21 QVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVL---------FEPPAPD 71 Query: 89 NTPILV----VDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+ V V R L + A + +G+ H ++ VTGT+GK+S + Q G Sbjct: 72 GLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L +G V++E SSH LDQ R+D Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDA 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF K A++ DD + + + Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKA--AVVNLDDGFGRTLFASLD 249 Query: 262 NA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V S + + + + HN +++ G+ PL G F V N L A Sbjct: 250 PVLRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAVA 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G A+ I A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 310 GALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSH 369 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 370 AQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARP 429 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 430 DAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 463 >gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7] Length = 477 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 162/517 (31%), Positives = 248/517 (47%), Gaps = 65/517 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59 MKL +LI KD E + P + +I ++SD+R + G IFV I G DGH Sbjct: 1 MKLYELI-KDVAE-----TSLP----DMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDA 50 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 Q + +G A+V L+ ++V +TR + S +G HPE Sbjct: 51 AQQMLDKGCAAVVCERDLGLE----------RQIIVTDTRAAFPMLCSAWFG-HPERELE 99 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+++ + ++++ G F++G T + D + TTP P L + Sbjct: 100 LIGVTGTNGKTTITTVIKKVLSGFG---FKVGLIGTCQNEIGDKIIPTARTTPEPYDLFE 156 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++ +G + +E SS GL+Q R+ G AG FTNL +DH+D H T + Y+ AK Sbjct: 157 LFRKMADEGCKYTVMEVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKM 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LF+ AII DD Y + + C + GK A + V Sbjct: 217 LFDIC----DTAIINTDDEYGRRYVTEIP---CPYKTYSVNGK--------ADFRAEDVM 261 Query: 293 ISVEGKDFDFL---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + G + F F +PG F V N+L +G ++ EK+ V Sbjct: 262 LGTTGVKYVFCDGKVKKNVSFNMPGLFNVSNSLAVIACMEVLGFTPCNTIKEFEKIQGVR 321 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E + T R + DYAHT ++L +L I+ + G++ +FGCGG+RD+ KR M Sbjct: 322 GRAEIIPT-GRDFTVICDYAHTPDALINVLSAIKEGSKGKVKCLFGCGGNRDRTKRAPMA 380 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459 A + AD IVT DNPR EDP+ I +++ G+ G ++ +R EAI AI+ K Sbjct: 381 AAAAEHADFLIVTSDNPRDEDPDDIINDVLKGLEGKDTPYVRMTDRREAIHWAIKNAEKD 440 Query: 460 DVLVVAGKGHETVHIVTNGEK----KMSVDCDIIREI 492 D++V+AGKGHE I+ G K + V D ++EI Sbjct: 441 DIIVLAGKGHEDYQILAGGVKIHFDEREVVADALKEI 477 >gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidothermus cellulolyticus 11B] Length = 522 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 232/471 (49%), Gaps = 46/471 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR +Q G +F A+ G G ++ A+ GA A++ A + + I Sbjct: 39 ICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA-----SLINRE 93 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+ + RK L A+ +YG HP L VTGT+GK++ F+ + +G + Sbjct: 94 VPLLICADPRKTLGPVAAAIYG-HPARALVTLGVTGTNGKTTTVFFLDAGLRAAGHRTGL 152 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T + + TTP + L+ + G+T ++E SSH L HR+DG Sbjct: 153 LGTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRVDGTGFA 212 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL DH+D+H + YF AK RLF + PK A+I DD Y + + A A Sbjct: 213 CVGFTNLSHDHLDFHGDMENYFAAKARLFRPDFAPK---AVIVVDDEYGRRLADTAPIA- 268 Query: 265 CRVLSVGYQGKFIHLKK----------------VCAIHNKQQV-TISVEGKDFDFLFPLP 307 R +S G+ HL V QV T++ + + LP Sbjct: 269 VRTVS----GRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLP 324 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + NAL+A + + +GI + L VPGR E V + VDYAHT Sbjct: 325 GRFNLTNALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQPFA-VLVDYAHTPE 383 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ + + +R GR+I+V GCGGDRD KRP MG A +LAD+AI T DNPRSEDPE+ Sbjct: 384 AVATVAREVRP-DRGRLIIVIGCGGDRDPSKRPAMGAAAAELADLAIFTSDNPRSEDPEE 442 Query: 428 IRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I A ++ G+P +R EAI+ AI+ DV+++AGKGHE Sbjct: 443 IVAAMLTGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKGHE 493 >gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Veillonella atypica ACS-134-V-Col7a] Length = 494 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 150/489 (30%), Positives = 242/489 (49%), Gaps = 34/489 (6%) Query: 9 KDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K ++I+ L + +Q + I ++++DSR ++ +F+A+ G DGH +I +A+A G Sbjct: 2 KTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVAAG 61 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++VS T+ ++ ++ V +TR+ + + +P N + + G +G + Sbjct: 62 AVAVIVSKP-------VTVPNDVCVITVSDTRQAMMACVPYFF-DYPANRMRMVGVTGTN 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + I ++G T+ D TTP + L L + + V Sbjct: 114 GKTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVE 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + +E SSH L R+ G++ FTNL +DH+D+H+T + Y AK +LFE++ Sbjct: 174 YCVMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQE 233 Query: 244 -----AIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISV 295 A+I DD+Y VM++ ++G +H+ Q T++ Sbjct: 234 KDNKGAVINIDDSYGHRVMEKTTAPTITYSTLGKGTLNASDVHMST-----KNSQYTVNY 288 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +G+ + G F VYN L A G C+ GI + L+ VPGRFE + + Sbjct: 289 KGESYPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELI-EEGQD 347 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT + L+ IL+ + I RII+VFGCGGDRD KRPIMG+IA + D V Sbjct: 348 FAVVVDYAHTPDGLQNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYV 407 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKG 468 T DNPR+EDP +I ++ G+ + G +R EAI AI D++++AGKG Sbjct: 408 TSDNPRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIAGKG 467 Query: 469 HETVHIVTN 477 HE I+ N Sbjct: 468 HENYQILKN 476 >gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus DSM 44985] Length = 506 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 238/483 (49%), Gaps = 40/483 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ ++ ++ G +FVA+ G + G FI A +GA A++ A A Sbjct: 34 RVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAAAVLTDEA------GAACLG 87 Query: 89 NT---PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLS 143 T +LV R L + +YG + V T + ++ + + +G + Sbjct: 88 GTDAMAVLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFRAAGRA 147 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T I S + + TTP L+ ++ GV V +E SSH LD R+DG Sbjct: 148 TGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEVSSHALDFGRVDGT 207 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAYSKEVMK 258 + AG FTNL DH+D+H ++YF AK +LF+ P S A+I DD++ + M Sbjct: 208 RFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQ---PGSSVAARRAVICVDDSWGQR-MS 263 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317 R V + + L++ QQV + + F F L G NA++ Sbjct: 264 RVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLGLLGRHNAANAVL 323 Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371 A GL A G+ V E L + VPGR E V + G+ + VDYAH SL Sbjct: 324 AVGLAEATGVR---VTEELVRGWADIAVPGRLERV----QAGQDFLAVVDYAHKPESLAK 376 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ +R T+GRI VV G GGDRDQGKRP+MG+++ A++ +VTDDNPRSEDP IRA+ Sbjct: 377 VLQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSEDPAAIRAQ 436 Query: 432 IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 ++ G G E +R EAI A+ D ++VAGKGHET V NG K D Sbjct: 437 VLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQEV-NGVKSHFDDR 495 Query: 487 DII 489 +I+ Sbjct: 496 EIL 498 >gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 493 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/465 (31%), Positives = 230/465 (49%), Gaps = 32/465 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 EITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS Y +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFY-DYPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q V + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L + A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLSTTDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + + K + + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVALVEGIPLTNISDSLSTLKRIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAITKDIEKG 427 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++E AI AI M + D++++AGKGHET I+ Sbjct: 428 FSQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472 >gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 484 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 150/485 (30%), Positives = 248/485 (51%), Gaps = 41/485 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +KL+D+++ E++ QL + ++ + DSR G +FVA+ G DGHLF Sbjct: 2 IKLKDILHAIPVQEVVGQLDV--------EVTSLCFDSRQANEGSLFVAVRGVHTDGHLF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + +AI QG I+V ++ A ++V +T L + A YG + Sbjct: 54 VEKAIQQGCTLIMV------EEMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+++A+ + + G + +G ST+ + + + TTP P+ L Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALG---YHVGLLSTVQNQIGERIIPATHTTPDPVALNAL 164 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +G + +E SSH + Q R+ G++ G F+N+ DH+D+H+T Y AK + Sbjct: 165 LRDMVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKF 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F++L + + A+ D+ +++ N + G +G K+ H + + Sbjct: 225 FDDL-DRFAFALTNGDEKNGSVMLQ---NTFAHKKTYGLKGVADFKAKIIESHFDGML-L 279 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++EG + L GEF YN L G I + ++ VL L ++ GRFE + S Sbjct: 280 NIEGHEV--WVKLVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI--TS 335 Query: 354 RGGRI-YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G I VDYAHT +++ +L I + +II V GCGGDRD+ KRP M ++A ++ Sbjct: 336 KNGVIGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMS 395 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR+EDP +I ++ GIP +K +R EAIR A + D+++VA Sbjct: 396 DKVIITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVA 455 Query: 466 GKGHE 470 GKGHE Sbjct: 456 GKGHE 460 >gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis C231] gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis 1002] gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium pseudotuberculosis I19] Length = 503 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 34/465 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E+S DS+ + G +F A+ G + G + + Q A + ++ + S R Sbjct: 30 IEEISLDSQELPQGGLFAALPGTRSHGAKYAQET--QAAAILTDAAGAEILRESGDTR-- 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P LVV+N R L ++ +YG+ ++ I+ +TGTSGK++ + ++ +G S I Sbjct: 86 -PRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTTTSYMLEAGLINAGKSVGLI 144 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T T I+ +LTTP L K + + +QGVTHV +E SSH L R+ A Sbjct: 145 GTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVMEVSSHALSLGRVSATHFAA 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAYSKEVMKRAHN 262 FTNL +DH+D+H T + YF AK LF+ P S +I D+ + ++++R+ Sbjct: 205 AGFTNLSQDHLDFHPTMEEYFEAKALLFD---PASSVHTKKTVICIDEPWGLQMLERS-- 259 Query: 263 AGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G LSV Q F+ Q+ ++ E + P+PG F V NA +A Sbjct: 260 -GAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVDLPIPGAFNVANAALA 318 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNI 376 GL ++GID + L + V PGR E V +RG VDYAH ++ +L+ + Sbjct: 319 IGLASSVGIDLDRFVAGLTAVSV-PGRMERV---NRGQDFLAIVDYAHKPAAVAAVLEAV 374 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R +GR+ +V G GGDRD+ KR IMGK + AD+ IVTDDNPRSEDP IR I+ G Sbjct: 375 RRQAAGRVAIVVGAGGDRDRSKRAIMGKESALRADLVIVTDDNPRSEDPALIREAILTGA 434 Query: 436 -----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E G+R EAI+ A+ D +++AGKGHE ++ Sbjct: 435 QKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKGHEVGQLI 479 >gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas vesicatoria ATCC 35937] Length = 491 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 220/458 (48%), Gaps = 25/458 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ +++ + DSR ++ G FVAI G G F+ QA A GA A++ F Sbjct: 14 RDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVL---------FEPP 64 Query: 86 IRSNTPI----LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ 138 + P+ + V R L A + +G HP L VTGT+GK+S + Q Sbjct: 65 APAELPVPADAIAVPGLRARLGSMADQFHG-HPSRALRMVGVTGTNGKTSTVQLLAQALT 123 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G S+ +G + A TTP + L+ L +G ++E SSH LDQ Sbjct: 124 LLGTSTGTLGTLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQG 183 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH Y AK +LF A++ DDA+ + + Sbjct: 184 RVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRA--GLQAAVVNLDDAFGRTLF 241 Query: 258 KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A V S G G + + HN + ++ PL G F V N Sbjct: 242 ASLDPALRAIGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNL 301 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L AG A+ A + + L +L + GR +G + VDYAHT ++LE L + Sbjct: 302 LAVAGALHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALAS 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R+ R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 362 LRSHAQDRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRG 421 Query: 436 IP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 422 FARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKGHE 459 >gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein [UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ( MurF); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (MurE) ] [Thiomonas sp. 3As] Length = 975 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 230/469 (49%), Gaps = 34/469 (7%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S+DSR +Q G +FVA G D F+ QA+A A + A +Q F T + IL Sbjct: 27 SADSRSLQPGEVFVAWPGAARDPRQFVTQALAA-GAAAALVEAEGVQHFGFT---DPRIL 82 Query: 94 VVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 VD + A+ YG HP + LAVTGT+GK+S A + Q +G IG Sbjct: 83 AVDGLKALAGPLAAAWYG-HPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTL 141 Query: 151 STISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 A Q TTP P+ L L+ L QG ++EASS GLD+HRL G + A +F Sbjct: 142 GAGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAF 201 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH AY AK LF + P A++ DD Y+ V+ A CR Sbjct: 202 TNLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLL----ADCRSRG 255 Query: 270 VGYQ-GKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + Q I CA Q++T+ P+ G F + N LV A L Sbjct: 256 LQVQTTALIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLH 315 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITS- 381 G+D A + L + VPGR + +G G + V DYAHT ++L+ L+ +R +T+ Sbjct: 316 TTGLDDAAIAAALRTVRAVPGRMQMLG--GIGAPLAVIDYAHTPDALDKALQALRPVTAK 373 Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 G++ VFG GGDRD KRP+M + AD ++T DNPRSE P I +++ G+ P Sbjct: 374 RKGKLWCVFGAGGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQP 433 Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 IE +R AI + DV+++AGKGHE + ++ S Sbjct: 434 AQALLIE--DRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIAGHKQAFS 480 Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 23/138 (16%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ + +DSR + G +FVA+ G + D H F+PQA A GA A++ Sbjct: 517 EVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQGVGA------- 569 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + +T + L L A + ++AVTG++GK++V + I L+++Q Sbjct: 570 -CGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASI-----LAAWQ 623 Query: 147 IGPTSTISSFAQDNRLTT 164 QD RL T Sbjct: 624 ----------GQDRRLAT 631 >gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus DSM 3776] Length = 551 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 160/482 (33%), Positives = 245/482 (50%), Gaps = 43/482 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N+V+ DSR + +FVA G G F+ +AI++GA +V S + N Sbjct: 31 NDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ----------VLPNC 80 Query: 91 PI--LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+ VV N R + + LYG HP + ++ VTGT+GK++V+ + + +SG + Sbjct: 81 PLPQCVVANPRAAYAYLSQSLYG-HPASRLRMMGVTGTNGKTTVSWMTRALMAKSGYRTG 139 Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + A+ + LTTP +A + S+G TH+++E SSH LDQ R + L Sbjct: 140 LLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAAALPL 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+ DH+DYH +Y AK R+ + + P + A+ D + + A Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAAS--LASLVPAE 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNA 315 CR++ G V A + Q ++ S+ G F + + G + NA Sbjct: 258 CRLIRYGV--------NVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENA 309 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +A + + E LE+ VPGR E T I+VDYAHT ++L L + Sbjct: 310 LAALAAGLAWKVPFLSMAEALEEFRPVPGRMERC-TWGEPFDIFVDYAHTPDALSRALCS 368 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +T GR+I VFG GGDRD KRP++G+ A AD+AIVT DNPRSE+PEKI +I G Sbjct: 369 LRGLTRGRLICVFGAGGDRDATKRPLLGRAA-SQADVAIVTSDNPRSENPEKIIQQICDG 427 Query: 436 IPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +P + + +R AI+ AIE D++++AGKGHE+ I+ D ++RE Sbjct: 428 VPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASHLPFD-DRRVVRE 486 Query: 492 IL 493 +L Sbjct: 487 LL 488 >gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis 053442] gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis 053442] Length = 492 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELVGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V Y F + I T S +G F P L G F N Sbjct: 258 LAV-YSYGFSEHADIRII----DFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPERVEADRAAAIRYAVERAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 164/509 (32%), Positives = 251/509 (49%), Gaps = 34/509 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DLI + ++ R V+ D+ + G +F A+ G+ G + Sbjct: 1 MKLSDLIAGQ-----DHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAV 55 Query: 61 PQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117 A+A+GA A++V A +L + +L V + RK ++ ASR +G+ ++ Sbjct: 56 APAVARGAVAVLVDQQAPTLP----AAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYL 170 +A+TGT+GK+SV+ + + + + ++G T S D + L+TP L Sbjct: 112 IAITGTNGKTSVSYMTESVLRLA--ERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDL 169 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 L ++ + V +EA+S GL HRLD + G FTNL +DH+D H T + Y +AK Sbjct: 170 QYLLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAK 229 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQ 289 +RLF+ L A++ ADD + K A V + G + + + Sbjct: 230 LRLFQGLC---RCAVVNADDPVGAGIRKLMPGA---VTTYALDGDADYRASDLTVDASGS 283 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + T+ +G+ + P PG F V NAL C +G A ++ LE++ +PGRFE + Sbjct: 284 RFTLHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERL 343 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 S G + VDYAH+ +SL +L IR GR+I VFGCGGDRD KR MG IA Sbjct: 344 QI-SGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTH 402 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +D+ ++T DNPR EDPE I +I GI F +R AI A+ D++++A Sbjct: 403 SDLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIA 462 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494 GKG E H GE D +RE++G Sbjct: 463 GKGSEP-HQSVRGELLPFSDMATVRELIG 490 >gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Photorhabdus asymbiotica] Length = 495 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 246/493 (49%), Gaps = 40/493 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + E++ DSR AG +FVAI G++ DG +IPQAIAQG A++ + + + Sbjct: 19 ECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAVIAEAQGEADSGTVQV 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V + LS A + Y HP L + G +G + + Q + Q + Sbjct: 79 IHGVPVVYVSDLNNKLSQLAGQFY-HHPGGQLRLIGVTGTNGKTTTTQLLAQWA----HG 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G S + + L TT S + + L L +G T ++E SSHGL Q R Sbjct: 134 LGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFAAMEVSSHGLVQGR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + FTNL RDH+DYH + Y AK LF K+ II ADD ++ + Sbjct: 194 VAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQ--IINADDDVGQKWLS 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEF 310 R A L +QG+++ ++ H+K V+++ E G D PL G F Sbjct: 252 RLPQAVAVTMENRLPENWQGRWLSASEI-KYHDKG-VSVTFESSWGGGTIDS--PLMGAF 307 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V N L+A +A+G +LE L V GR E + + VDYAHT ++LE Sbjct: 308 NVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVFNAPDKP-TVVVDYAHTPDALE 366 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L R GR+ VFGCGGDRD+GKR +MG +A AD I TDDNPRSE+P+ I Sbjct: 367 KALLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWADYVITTDDNPRSEEPQAIVD 426 Query: 431 EIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +I + GFI+ G R+EA+ +AI + DV++VAGKGHE +V G +++ Sbjct: 427 DI---LTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKGHEDYQLV--GHRRLDY 481 Query: 485 -DCDIIREILGLI 496 D + +LG+I Sbjct: 482 SDRLTVARLLGVI 494 >gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32] gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32] Length = 508 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 169/485 (34%), Positives = 244/485 (50%), Gaps = 57/485 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G +F A+ G DG+ FI A+ GA A+V+ + D A +R V Sbjct: 29 DSRKVQPGGLFFALKGVASDGYAFIEVAVKAGAVAVVIEDDRTPADI-AWVR-------V 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTS-T 152 + R +SL A+ Y + V T + ++ I ++ GL + +G + Sbjct: 81 ADGRLAMSLMAAAFYANPAAGLPVVGITGTNGKTTTTFLLESIFEKGGLPAAVLGTVNYR 140 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TTP + L + L L G + +E SSH L Q R+DG G FTNL Sbjct: 141 FGDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIVMEVSSHALQQRRIDGCSFNVGVFTNL 200 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELL-PKESP----AIIYADDAYSKEVMKRAHNAGCRV 267 RDH+DYH ++Y +K RLF ELL P E A+I DD Y + + A A C V Sbjct: 201 TRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPERHAVINTDDEYGRRI---AQAAACPV 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 ++ G ++K I N + V SV G P L G F +YN + A Sbjct: 258 VTYG-------IEKSADI-NAENVEFSVSGISCTLATPKGRIELRSMLVGRFNLYNIMAA 309 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG +A+G+ + E LE VPGR E V N+ G + VDYAHT ++LE +L + Sbjct: 310 AGAGVALGLPLESIKEGLEHHGQVPGRLERV-ENALGVTVLVDYAHTGDALENVLLTMTE 368 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 + GRII +FGCGGDRD+GKRPIMG+IA +D++I+T DNPR+E+P +I A++ GI Sbjct: 369 LKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDLSIITSDNPRTENPAEIMAQVREGIVR 428 Query: 437 ----------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 GF+ R +AIR A++ D++++AGKGHE I+ G++ Sbjct: 429 LGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVKAARPGDIVLLAGKGHEDYQII--GKE 486 Query: 481 KMSVD 485 K D Sbjct: 487 KFHFD 491 >gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 7169] gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 12P80B1] Length = 520 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 239/467 (51%), Gaps = 36/467 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ DSR I FV + +++D + A + ++ S+A+ + +F Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98 Query: 89 ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140 PI+ V N R +L L A+RL H I+AVTGT+GK++V+ + Q+CQ S Sbjct: 99 LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158 Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G+SS +G + Q TT + + ++ +GV +++EASSHGLDQ+R Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 L G+ +I +TNL RDH+DYH +Y +AK +LF++ L P ++ DD + + Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274 Query: 258 KRAHNAGCRVLSVGYQ-------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 A +++ Q K + L C ++ + + + PL G F Sbjct: 275 FDYETADFQIIGYSQQKPNADFYAKAVRLSLDCV-----EIEVQTPQGEMTAISPLLGLF 329 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V N L + A+ A L +L +L GR + +S+ G +DYAHT ++L Sbjct: 330 NVDNLLASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDAL 387 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + +L ++R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I Sbjct: 388 KQVLSSLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447 Query: 430 AEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 A++ G+ I + +R AI A++ K D++V+AGKGHET Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494 >gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA1] gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA1] gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA4] gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA1] gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL050PA3] gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL067PA1] gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA1] gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL059PA2] gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA1] gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA3] gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA2] gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA1] gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA2] Length = 499 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 15998] gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces roseosporus NRRL 11379] gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus NRRL 15998] Length = 491 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 241/481 (50%), Gaps = 37/481 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-----AYSLQDFSATIR 87 V+ D+ + G +F A+ G+ G + A+A+GA A++V +L D A Sbjct: 28 VTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVARGAVAVLVDEQAPPLPRALGDVCA--- 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + V + RK ++ ASR +G+ +++A+TGT+GK+SV+ + + + + Sbjct: 85 -----VRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGKTSVSYMTESVLRLA--EQA 137 Query: 146 QIGPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++G T S D + L+TP L L ++ + V +EA+S GL HR Sbjct: 138 RVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRACGSVVLEATSMGLLTHR 197 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LD + G FTNL +DH+D H T + Y +AK+RLF+ L + A++ ADD + K Sbjct: 198 LDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQGLCRR---AVVNADDPLGAGIRK 254 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A V + G + + + + T+ +G+ + P PG F V NAL Sbjct: 255 LMAGA---VTTYALDGDADYRASDLTVDASGSRFTLHHDGRKYPAAIPSPGRFSVSNALA 311 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 C +G A +++ LE++ +PGRFE + G + VDYAH+ +SL +L IR Sbjct: 312 TVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPG-GTSVIVDYAHSPDSLNKVLTTIR 370 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GR+I VFGCGGDRD KR MG IA +D+ ++T DNPR EDPE I +I GI Sbjct: 371 GFARGRVITVFGCGGDRDTTKRAEMGAIAGTHSDLCVLTSDNPRYEDPEAILDQIAEGIA 430 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 F +R AI A+ D++++AGKG E H GE D +RE++ Sbjct: 431 STGTPFERLTDRRPAIAAALAEAGPDDIVLIAGKGSEP-HQSIRGELLPFSDMATVRELI 489 Query: 494 G 494 G Sbjct: 490 G 490 >gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 491 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 221/455 (48%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR ++ G FVAI G G F+ QA A GA A++ F Sbjct: 17 QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 67 Query: 89 NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 P+ + V R L + A + +G+ + ++ VTGT+GK+S + Q G Sbjct: 68 GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 127 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L G V++E SSH LDQ R+D Sbjct: 128 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGRVDA 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF K A++ DDA+ + A Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKA--AVVNLDDAFGHTLFA-AL 244 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN +++ G+ PL G F V N L Sbjct: 245 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 305 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 364 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 365 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 424 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 425 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 459 >gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA1] Length = 499 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARV--GVINVDDPRGRQLVER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pyramidobacter piscolens W5455] Length = 499 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 227/469 (48%), Gaps = 45/469 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + SDSR + G IF +VG DGH FI Q + G +++ S P Sbjct: 34 LKSDSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLLIQRPVSGLPI--------PW 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP- 149 + V + R + A+ L + E + AVTGT GKS+ + V+ I Q G+ +G Sbjct: 86 IQVTDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVRSILQNCGVKCGLLGTI 145 Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 S D TTP + + L + G S+E SSHG+ Q RL G Sbjct: 146 VYDDGSKSVLADR--TTPEGSEIQQFLKNMVDNGCQACSMECSSHGIAQGRLSGCLYDGA 203 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL +H+D+H T + Y+ AK LF + L P A +A S+ H R Sbjct: 204 VFTNLTPEHLDFHGTMENYYEAKAALFRKYL---KPGAAVAPNAASE------HG---RR 251 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALV 317 L+ + + A V + ++G +FD +F PL G V NAL Sbjct: 252 LAAEFPQAMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRHNVENALG 311 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AA +C+A G D V+ L + VPGR E + ++ G R+ +DYAHT++SL+ +L+ +R Sbjct: 312 AAAVCLAEGCDEKKVVAGLALMPQVPGRMERLNLDN-GVRVVIDYAHTADSLKALLETLR 370 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +T GR++ +FG GGDR G R ++G+ A AD VT DNPR+EDP KI +I+ GI Sbjct: 371 PLTEGRLVSLFGHGGDRFAGHRSLLGRAAAQKADRIFVTMDNPRTEDPLKIAEQIVAGIE 430 Query: 438 GFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 G R AI A++ + D+LV++GKG E ++ NG K Sbjct: 431 EVRADGCWSIELPRDAAICKALDWCRRGDLLVLSGKGPEP-YLEINGVK 478 >gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 515 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 236/455 (51%), Gaps = 25/455 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+ + G +F+A+ G+ E G + A+A+GA A+VV + T + ++ V Sbjct: 31 DADRVVPGSLFIAVPGHLEGGPGAVAPALARGAAAVVVEDGCVVP----TAAGDVCVVQV 86 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + R+ ++ ASR +G+ +++A+TGT+GK+SV+ V+ + S + G T Sbjct: 87 PDARRTAAVAASRYFGEPGRRMDMVAITGTNGKTSVSYMVESALRIS--EGARAGVIGTA 144 Query: 154 SSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 S D + L+TP L L Y+ +GV V +EA+S GL HR+D + Sbjct: 145 GSRIGDELIPMPRSVLSTPESPDLQYLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+D H T + Y +AK+RLF+ L A++ ADD + A Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCEH---AVVNADDPVGARIGAMMPGA-VT 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ + F + A + + T+ +G+ + P PG F V NAL A C +G Sbjct: 261 TYALDAEADF-RATDLTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLG 319 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D A ++ L ++ +PGRFE + T G + VDYAH+ +SLE +L +R ++ Sbjct: 320 HDLAGLVSALGRMPQIPGRFERL-TTVGGTSVIVDYAHSPDSLEKVLGAVRGFARSAVVT 378 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD KR MG+IA +D+ ++T DNPR+EDPE I +++ GI R Sbjct: 379 VFGCGGDRDTTKRTDMGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERF 438 Query: 447 EAIRTAIEM----LNKQDVLVVAGKGHETVHIVTN 477 RTAIE D++++AGKG E IV + Sbjct: 439 TDRRTAIEFALSAAGPDDIVLIAGKGSEPYQIVGD 473 >gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Neisseria meningitidis FAM18] gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis FAM18] Length = 492 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 230/478 (48%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E++ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDGYGAELIGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G + F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANDYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 495 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 151/455 (33%), Positives = 221/455 (48%), Gaps = 25/455 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + DSR ++ G FVAI G G F+ QA A GA A++ F Sbjct: 21 QVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVL---------FEPPAPD 71 Query: 89 NTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142 P+ + V R L + A + +G+ + ++ VTGT+GK+S + Q G Sbjct: 72 GLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGT 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + A TTP + L+ L G V++E SSH LDQ R+D Sbjct: 132 PTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGRVDA 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTNL RDH+DYH Y AK +LF K A++ DDA+ + A Sbjct: 192 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKA--AVVNLDDAFGHTLFA-AL 248 Query: 262 NAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + R + V + + + + HN +++ G+ PL G F V N L Sbjct: 249 DPALRAIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAV 308 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A+ A + L +L + GR +G + VDYAHT ++LE L ++R+ Sbjct: 309 AGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRS 368 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 R+I VFGCGG+RD GKRP M IA AD+AIVTDDNPR ED + I A+I+ G Sbjct: 369 HAQDRLICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFAR 428 Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AI M + D++++AGKGHE Sbjct: 429 PDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKGHE 463 >gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 492 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 160/468 (34%), Positives = 242/468 (51%), Gaps = 34/468 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVAI G+ DG FI +AI GA AI+ A L +F ++ P+ +V Sbjct: 26 DSREVTPGDVFVAIKGHTLDGGQFIAKAIENGAIAII---ADRLCEFESSFE---PLYLV 79 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 K L ASR Y + + +++ VTGT+GKS+ + + + Q S IG T+ Sbjct: 80 SELDKKLPELASRFYSQPSQTLDLIGVTGTNGKSTTTAMIAHLAQFCSTESAIIG---TL 136 Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 DN + TTPS + L LS L+SQ V++E SSHGL Q R+ + A F Sbjct: 137 GYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAMEVSSHGLVQQRVAKCQFKAAVF 196 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGC-- 265 TNL RDH+DYH +Y +AK+ LF + P+ ++ DD +++ +++ +N C Sbjct: 197 TNLSRDHLDYHGDMASYGDAKLMLFRDFEPQV--VVLNQDDFQAEQWLEKYDFNNLICYG 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R ++++ V +S D PL GEF +YN A + + Sbjct: 255 RKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIKSPLFGEFNLYNLTAALATLLGL 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGR 383 G ++ +L V GR + S+ G VDYAHT ++L + L+ ++ G Sbjct: 315 GYPLEQLVAGCAQLQPVAGRMQAF---SQAGMPTCVVDYAHTPDALALALQALQLHVPGG 371 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439 + VFGCGGDRD+GKR +M + A A+ I+T DNPRSE+P+ I A++ G+ Sbjct: 372 VSCVFGCGGDRDKGKRALMAQAAEQNANKIIITSDNPRSENPDDIIADVAGGLTHPQNAH 431 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +E +R AIR AIE DV+++AGKGHE I+ G+K++ CD Sbjct: 432 LE-ADRATAIRFAIENATADDVILIAGKGHEDYQII--GDKRIDF-CD 475 >gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Intrasporangium calvum DSM 43043] Length = 563 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 170/540 (31%), Positives = 249/540 (46%), Gaps = 91/540 (16%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSA 84 ++ S DSR + G ++ A+ G G F A+ GA A++ +A + Q SA Sbjct: 32 RVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLTDAAGAAVIRGQAGSA 91 Query: 85 -------------------TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 + P+LVVD+ R L A+ +YG ++ + +TGT Sbjct: 92 DSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIYGDPGADLTMVGITGT 151 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK++ A ++ + G S+ IG T + D+ TTP + L+ + +G Sbjct: 152 NGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEATDVHALLAVMRERGA 211 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +E SSH LDQHR+DG+ FTNL +DH+DYH + + YF AK RLF P+ S Sbjct: 212 DTCVMEVSSHALDQHRVDGVVYDVALFTNLSQDHLDYHGSMEDYFAAKARLFT---PERS 268 Query: 243 -PAIIYADDAYSKEVMKRAHNA-------------------GCRV-LSV---------GY 272 ++ DD + + ++ RA G V SV G Sbjct: 269 LSGVVCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVDWSVVPRRGAAVDGA 328 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G+ HL +H ++S+ LPG+F V N +AA +++G + A V Sbjct: 329 SGQPFHL-----VHRSGDRSLSLASH-------LPGDFNVANTAIAAVALLSLGHEPARV 376 Query: 333 LEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 L VPGR E V + R VD+AHT +++++ L +R T GR+I V G G Sbjct: 377 EAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDVALAALRPSTRGRLIAVLGAG 436 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----------FI 440 GDRD+GKR MG+ A ADI +VTDDNPRSEDP +IR ++ G I Sbjct: 437 GDRDRGKREAMGRAAARHADIVVVTDDNPRSEDPAEIRRTVLAGARSAVTDGSAVAREII 496 Query: 441 EKGNRIEAIRTAIEML-------NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + G R AI +AI M + D +VV GKGHE V NG K D + +R L Sbjct: 497 DGGARSRAISSAIAMALRGSSGSDGADTVVVLGKGHEKGQEV-NGVKHPFDDREAVRTAL 555 >gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter radioresistens SK82] Length = 499 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/482 (32%), Positives = 244/482 (50%), Gaps = 57/482 (11%) Query: 20 IFP----MQWRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVV 73 I+P ++W + + DSR +QAG IF+A+ + + +F A++QGA I+ Sbjct: 8 IYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKTRIFAENALSQGALGIIS 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSV 129 S + T V R+++ + + L P N ILAVTGT+GK+++ Sbjct: 68 ESDLGV----------TTAWVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGKTTI 117 Query: 130 A-------SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + SF +Q C G + I P S+ TT + L AL SSQG Sbjct: 118 SRLIAELISFQKQPCAVMGTTGNGILPHLVASTH------TTLDALQLQNALHDFSSQGA 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 V++EASSHGL+Q RL+G ++ ++NL RDH+DYH T AY +AK LF+ Sbjct: 172 NFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFK--FATLR 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A+I DD Y+ +++ A R + Y L+ A + + S++G F Sbjct: 230 SAVINLDDDYAPVMLETAQANPARPKILTYS-----LQHPEADYRVSDIHYSLKGAKFKL 284 Query: 303 LFP---------LPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P L G+F + N LVA+ + + G + +L + +L PGR + + Sbjct: 285 IAPTGEYVVQSPLLGQFNIEN-LVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDA 343 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 R VDYAHT ++L +L ++ ++ +FGCGGDRD+GKRP+M + AL+ AD Sbjct: 344 ER--LFVVDYAHTPDALTQVLVTLKRHVQHQLWAIFGCGGDRDRGKRPLMTQAALNDADP 401 Query: 413 AIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I+T DNPR+E PE+I ++ H G E +R EAI+ A++ D++V+AGKG Sbjct: 402 VILTSDNPRTESPEQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461 Query: 469 HE 470 HE Sbjct: 462 HE 463 >gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Frankia sp. CcI3] gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Frankia sp. CcI3] Length = 544 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 143/397 (36%), Positives = 214/397 (53%), Gaps = 32/397 (8%) Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LV D+ R+ L+ A+R+YG +L VTGT+GK++ A + + +G ++ IG Sbjct: 135 LVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGLIG-- 192 Query: 151 STISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 TI + D RL TTP L L+ + +GV ++E SSH L HR D + Sbjct: 193 -TIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADALHFAG 251 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+D+H + + YF AK LF+ + + A+I D + + + +R A Sbjct: 252 AVFTNLSQDHLDFHSSMEDYFAAKASLFDPA--RTAVAVIGVADRWGRRLAERHPGA--- 306 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCI 323 ++ +G + + + + EG D D PLPG F V N L A L + Sbjct: 307 -ITFAVEGPADWTARDVS-YGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTLGALALLV 364 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTIT 380 AIG+ A + L VPGR E V G+ + VD+AHT +++ +L+ +R + Sbjct: 365 AIGVPPATAAAGIGSLPGVPGRMERV----DAGQPFLALVDFAHTPDAVTTLLETVRPLV 420 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439 GR+IVV GCGGDRD+GKRP+MG A LAD+AI+T+DNPRSEDP +I A+++ G+ Sbjct: 421 KGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTALS 480 Query: 440 -----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + + +R AI A+ QD +VVAGKGHE+ Sbjct: 481 ASATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHES 517 >gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 8801] gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801] Length = 501 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 156/493 (31%), Positives = 251/493 (50%), Gaps = 19/493 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KLQDL+ K P + I P +R++ + ++S Q G +F+ + G + DG F Sbjct: 2 VKLQDLLAK-VPTI---QEIPPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFW 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ GA A +++ + F T + +++ ++ + A+ Y + + + Sbjct: 58 TSALEAGAVAAIITPEAAAH-FPPT--PDVCVIIAEDMISVSAQLATAFYNYPTQQLKMI 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT+GK++ ++ +S + +G T F Q TTP + L + L+ Sbjct: 115 GVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-E 236 G + +E SSH L Q R+ G + F+NL +DH+DYH+ + YF+AK LF + Sbjct: 175 VDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPD 234 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L K AII DDAY + +++ SV + + T+ Sbjct: 235 YLAKR--AIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355 F PL G+F + N L A + +G+D ++ L + VPGR E V ++ + Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQE 352 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R G++I VFGCGGDRD+ KRP+MG+I+ LAD+++V Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP + +R AI AI+ D +++AGKGHE Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDY 472 Query: 473 HIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 473 QIL--GTEKIHFD 483 >gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase [Blastopirellula marina DSM 3645] Length = 496 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 238/456 (52%), Gaps = 39/456 (8%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +FVA+VG +DGH F+ +AIA GA AI+ A + + P+ +V+NT+ + Sbjct: 30 LFVAMVGAHQDGHDFVEEAIANGASAILSERA---------LPTTRPVCIVENTQSAYAQ 80 Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR- 161 L G + ++ VTGT+GK++V +Q I + +G + +G +S++ +R Sbjct: 81 ICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIMETAGAT---VGMSSSLGYDNGYDRQ 137 Query: 162 ---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 TTP+ LA LS + G TH VEASS L + RLDGI+L A + TNL +DH+D Sbjct: 138 PWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRDRLDGIELDAVAITNLRQDHLD 197 Query: 219 YHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H + Y AK ++ L +E+ A++ ADD+ +++ + LSV G Sbjct: 198 VHGSVTNYHRAKKKILGRL--RETGFAVVNADDSACNKLLSQIETPA---LSVALHGAAE 252 Query: 278 HLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 V H +Q + G + + G+ VYN LVAA + + G+D V+ L Sbjct: 253 ITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYNCLVAAAVGLVYGVDLKTVVRGL 312 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E++ +PGR + + G ++VD AHT ++L M LK +R +T GR+I V+G G D Sbjct: 313 ERVDSIPGRMQRIECGQPFG-VFVDLAHTHDALAMALKALRRVTHGRVICVYGADGLGDP 371 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAI 449 KRP++G++A AD++++T NP E P E+IH I E+ NR AI Sbjct: 372 SKRPLLGRVAERGADLSLITSANPGDESP----LEVIHDILDGYERPARAHVMPNRAAAI 427 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+ D +++AG+G T ++ T E+++ +D Sbjct: 428 EWALSEAQTGDTVLIAGRG--TPNLQTLREEELPLD 461 >gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus anthracis CI] gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bacillus cereus biovar anthracis str. CI] Length = 492 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 147/468 (31%), Positives = 230/468 (49%), Gaps = 38/468 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 KITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS Y +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFY-DYPSNKMKLIGITGTNGKTTTSYLLEKIFSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + ++ + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L ++ A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVAMVEGIPLTNICDSFSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I Sbjct: 368 ISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDI--- 424 Query: 436 IPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF++ N R AI AI M + D++++AGKGHET I+ Sbjct: 425 EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 472 >gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Janibacter sp. HTCC2649] Length = 515 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 242/468 (51%), Gaps = 41/468 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G ++ A+ G++ G F +A A V++ A ++ A + Sbjct: 36 VTGVTLDSRAVRPGDLYAALPGSRAHGADFA-AQVADAGAAAVLTDADGVERLRAA-GVD 93 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS----VASFVQQICQRSGLS 143 P++VV+ R L A+R+YG ++ + +TGT+GK++ VAS + + QR+GL Sbjct: 94 LPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGKTTTAYLVASALDALGQRTGL- 152 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG T+ + D R+ TTP L L+ + + +E SSH L QHR+ Sbjct: 153 ---IG---TVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTCVMEVSSHALSQHRV 206 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK 258 DG+ FTNL +DH+D+H + YF+AK +LF P+ S +I DD + + + Sbjct: 207 DGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLF---TPERSTRGLICVDDIWGRRL-- 261 Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A G V ++ +G+ + + G + D LPG+F V N + Sbjct: 262 -AEECGIPVTTLTTIEGQTADWVVTVDATEPARFALRGTGIELDLRSALPGDFNVANTAM 320 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRI-YVDYAHTSNSLEMI 372 AA + +G D+ V + VPGR E V T+ G + VDYAHT +++E Sbjct: 321 AAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVVDYAHTPDAVEAA 380 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L +R T+GR++VV G GGDRD+GKR MG+ A LAD+ +VTDDNPRSEDP +IR + Sbjct: 381 LAALRPTTTGRLVVVLGAGGDRDRGKRHGMGRAAAGLADVVVVTDDNPRSEDPAQIRTAV 440 Query: 433 IHGIPG------FIEKGNRIEAIRTAIEMLNK---QDVLVVAGKGHET 471 + G +E G+R +AIR + + + VL V GKGHET Sbjct: 441 VEGARSIDTTALLVEVGDRRKAIREGVRLAREGGSGSVLAVVGKGHET 488 >gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida W619] gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619] Length = 496 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 159/483 (32%), Positives = 239/483 (49%), Gaps = 38/483 (7%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR ++AG +F+A+ G K DG I+ + AY Sbjct: 9 LFAHASRDPLIRELTLDSRAVRAGDLFLAVPGAKVDGR----DHISDALARGAAAVAYEQ 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 Q ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 65 QGTHVLPITDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L L G V++E SSH Sbjct: 125 DALGQRCGL----IGTLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ ++ TNL RDH+DYH + +AY AK +LF P ++ DD + Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPGLRCQVVNLDDGF 238 Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFL 303 + + + R+LS + L A + + + ++ +G + Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQG-ERTLR 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G F + N L A +A+ +L+ +L GR + +G + + VDYA Sbjct: 298 SQLLGRFNLSNMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQRLGGGEK-PLVVVDYA 356 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR+E Sbjct: 357 HTPDALEKVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTE 416 Query: 424 DPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DP+ I +I PGF + R EAI I DV+V+AGKGHE + N Sbjct: 417 DPQAIFNDI---RPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKGHEDYQEI-N 472 Query: 478 GEK 480 G++ Sbjct: 473 GQR 475 >gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311] Length = 503 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 246/485 (50%), Gaps = 34/485 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + I ++ DSR + G +F+ + G + DG F P+A+ GA A+++ SA + Sbjct: 17 PQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIGSAAA--- 73 Query: 82 FSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ 135 AT+ +S+ ++V D ++ A+ + HP ++ VTGT+GK++ ++ Sbjct: 74 --ATLPPEQSDAVLVVPDPVARWAGELAAAFW-NHPSERIGLIGVTGTNGKTTTTHLIEH 130 Query: 136 ICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + G S G P ++++ TT L L+ + G ++E Sbjct: 131 LSSACGRPSALFGTLLNRWPGHSVTATH-----TTAVADRLQAQLAEAYAAGAQLTAMEV 185 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIY 247 SSH LDQHR+ G + FTNL +DH+DYH+T +YF AK RLF L + A ++ Sbjct: 186 SSHALDQHRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVVN 245 Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD + K + +R + R LS G + + + + + + + F PL Sbjct: 246 IDDPWGKHLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQSPL 305 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYA 363 G F V N L A G+ + G+ +LE + VPGR E V + +GG + VDYA Sbjct: 306 LGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVDYA 365 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT + L L R G++I VFGCGGDRD+GKR M IA +LAD +VT DNPR+E Sbjct: 366 HTPDGLSSALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSDNPRTE 425 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP++I +++ GIP +R EAI AI+ D++++AGKGHE I+ G + Sbjct: 426 DPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQIL--GTQ 483 Query: 481 KMSVD 485 K+ D Sbjct: 484 KVHFD 488 >gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax sp. DG881] Length = 490 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 226/466 (48%), Gaps = 22/466 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR++ G +F+A+ G DG FI +Q A V+ + F P + + Sbjct: 28 DSRNVAPGDLFLAVPGVASDGRQFI----SQAVAAGAVAVLADAETFEIQQDQAVPCVAL 83 Query: 96 DNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-T 152 + + A+R YG+ N++ VTGT+GK+S+ F++ G +G Sbjct: 84 PELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTSITWFLRDALNALGHRCALVGTLGLG 143 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + Q TTP PI L L+ + G V++E SSH LDQHRL + F+NL Sbjct: 144 LKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAMEVSSHALDQHRLGSTPVPVAVFSNL 203 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH +AY AK LF K A+I DD + ++ + G R ++ G Sbjct: 204 SRDHLDYHGDMEAYLAAKSVLFTRDGVKL--AVINCDDPAAYSLIGCLAD-GVRCVTFGD 260 Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 Q G + V + + ++V G PL G F + N + AG+ GI +A Sbjct: 261 QPGATVRCAAVTFTADGMRAELTVGGDPLTVTLPLFGRFNLSNVMAVAGILHGQGISTAS 320 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L + VPGR E V + VDYAHT + LE L+ R GR+ + GCG Sbjct: 321 LGGALAAVTAVPGRMEPV-QQPGCPTVIVDYAHTPDGLEKALQACRAHFHGRLFCIVGCG 379 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNR 445 GDRD GKRP M +A AD ++T DNPRSEDP++I ++ G + +E R Sbjct: 380 GDRDTGKRPQMAAVAERGADRVVLTSDNPRSEDPQQIIDDMRAGLADAASVQAIVE---R 436 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +A+ ++ + DV+++AGKGHE V +G + S D D+ R+ Sbjct: 437 AQAVMDTVQAASDGDVILLAGKGHEDYQEV-DGVRYPSDDRDLARK 481 >gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Planctomyces maris DSM 8797] Length = 505 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 240/467 (51%), Gaps = 46/467 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRS 88 + + SDSR Q G +F + G KE ++P+AI +GA+AI+ + LQ Sbjct: 34 VTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTGLQ-------- 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P +V + RK +L S L G+ ++ VTGT+GK++V+ ++ I Q SG + Sbjct: 86 -VPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTGL 144 Query: 147 IGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G S + + LTTP L++ L+ + + TH +E SSH LDQ+RL GI L Sbjct: 145 SGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRLAGIDLS 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+ +DH DYHQ Y K R+ +++ P E ++ DD + ++ Sbjct: 205 VGVITNVTQDHFDYHQNFGNYAACKARMIQQVKP-EGTLVLNWDDPTCRSFAAEVKSSQ- 262 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNAL 316 +L+ G+ A Q + S G +F+ LF L G + N L Sbjct: 263 TLLTYAIDGQ--------ADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCL 314 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA C+++G+ + + +E+L VPGR E V T + + +DYAHT ++L ++++ Sbjct: 315 AAAAACLSLGVSLSEIALGIERLVTVPGRMERV-TCGQSFTVLIDYAHTDDALSHVIRSA 373 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + S R+ VFG GGDRD GKR ++G +A AD I+T DNPRSEDP A+II + Sbjct: 374 KRLCSQRVFCVFGAGGDRDTGKRSLLG-MAASEADRVIITSDNPRSEDP----AQIIRAV 428 Query: 437 P-GFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G + KG +R EAI A+ + D++++AGKGHE I+ Sbjct: 429 AEGCLNKGVSPEQIIDRREAIHYALSEARRGDLVLIAGKGHENNQII 475 >gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum indicum S5] gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum indicum S5] Length = 464 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 163/468 (34%), Positives = 229/468 (48%), Gaps = 47/468 (10%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + + +S D+R I +F+AI G++ D HL +P+ ++ G ++ A Sbjct: 13 PHPQVDVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGK----IAGALCQHP 68 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139 NT LV+ + + + A YG ++ VTGT+GKSS S+++Q+ Q Sbjct: 69 VDG---PNT--LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQA 123 Query: 140 SGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG L TTP L L V +V +E SSH + Sbjct: 124 LGHRTATIGTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIALG 183 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ GI+ FTNL DH+D+H T Y K+RLF +PA YA + Sbjct: 184 RVQGIRFHGAIFTNLTPDHLDFHGTMDDYLQTKLRLF-------TPAPPYAIIHTRRIPR 236 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQV 312 K G VLS G G+ + +QQV S EG F + PL G + Sbjct: 237 KLPPLPG--VLSFG-PGEDADIPT-----TEQQV--SPEGIRFCLQGQIYRSPLRGRGNL 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N A C G + V + L + GRF + N R G +DYAHT ++LE + Sbjct: 287 ENVQAVAAFCHHEGQERQQVARAIAALRPIEGRFMPISHNGRHG--IIDYAHTPDALEQL 344 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK+ R I GR+IVVFGCGGDRD+ KRP+MG IA +LADI IVTDDNPR+EDP+ I ++I Sbjct: 345 LKSTREICHGRLIVVFGCGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQI 404 Query: 433 IHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I ++ G R+ AI A E+ N D++V+AGKGHE I Sbjct: 405 I----AAMDMGRTTVIHERLRAITCARELANGDDLVVIAGKGHEKYQI 448 >gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes KPA171202] gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK187] gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA1] gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL110PA2] gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL025PA1] gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL086PA1] gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL082PA1] gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA2] gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA1] gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL092PA1] Length = 499 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 7942] Length = 497 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 163/465 (35%), Positives = 239/465 (51%), Gaps = 17/465 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRS 88 I + +DSR Q G +F+ + G + DG F P+AIA GA A++V+ +A + + SA + Sbjct: 26 ITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAIAAGAVAVIVTPTALAQRPLSANPEA 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++ D A+ Y + + + + VTGT+GK++ V+ + + Sbjct: 86 C--LILSDQMPVTAGAIAAAFYNQPAQTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTAL 143 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + +++ + TTP L L+ G +E SSH LDQ R++G Sbjct: 144 LGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFD 203 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH T +AYF AK RLF + A+I ADDAY + ++ C Sbjct: 204 VAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYLRGK-AVINADDAYGQRLITMTPPGQC 262 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCI 323 SV F + TI F F PL G+F + N L +AAG + Sbjct: 263 LTYSVVGTADFCTTDLQYGPTGVEG-TIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTL 321 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + I++ L + + VPGR E V + VDYAHT +SLE +LK R G Sbjct: 322 GLPIETMLAV--VPDFVGVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGE 379 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440 +I VFGCGGDRD+ KRP+MG+IA LAD I+T DNPR+EDP +I A+I+ GIP + Sbjct: 380 LICVFGCGGDRDRTKRPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVV 439 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R AIR AI D +++AGKGHE I+ G K+ D Sbjct: 440 VEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQIL--GTTKIHFD 482 >gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase [Synechococcus elongatus PCC 6301] Length = 502 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 163/465 (35%), Positives = 239/465 (51%), Gaps = 17/465 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRS 88 I + +DSR Q G +F+ + G + DG F P+AIA GA A++V+ +A + + SA + Sbjct: 31 ITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAIAAGAVAVIVTPTALAQRPLSANPEA 90 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++ D A+ Y + + + + VTGT+GK++ V+ + + Sbjct: 91 C--LILSDQMPVTAGAIAAAFYNQPAQTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTAL 148 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + +++ + TTP L L+ G +E SSH LDQ R++G Sbjct: 149 LGTLYNRWPGYSEVAQHTTPFATDLQAQLATAVDAGCQAAVMEVSSHALDQGRVNGCGFD 208 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH T +AYF AK RLF + A+I ADDAY + ++ C Sbjct: 209 VAVFTNLTQDHLDYHGTMEAYFAAKARLFAPPYLRGK-AVINADDAYGQRLITMTPPGQC 267 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCI 323 SV F + TI F F PL G+F + N L +AAG + Sbjct: 268 LTYSVVGTADFCTTDLQYGPTGVEG-TIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTL 326 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + I++ L + + VPGR E V + VDYAHT +SLE +LK R G Sbjct: 327 GLPIETMLAV--VPDFVGVPGRMERVVGQDSDPTVIVDYAHTPDSLENLLKAARPFIQGE 384 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440 +I VFGCGGDRD+ KRP+MG+IA LAD I+T DNPR+EDP +I A+I+ GIP + Sbjct: 385 LICVFGCGGDRDRTKRPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVV 444 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + +R AIR AI D +++AGKGHE I+ G K+ D Sbjct: 445 VEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQIL--GTTKIHFD 487 >gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 473 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%) Query: 100 KFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISS 155 K L A++++ K P + L A+TGT+GK++ A + + + G + +G + I Sbjct: 72 KAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGRKTALLGTIKNKIGD 131 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 + LTTP + L + S ++G T + +EASSH L Q R+ GI+ +G F+NL +D Sbjct: 132 KSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAGIRFRSGLFSNLTQD 191 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+DYH+T AYF AK LF + L + A+I DDA+ +++ + CR ++V GK Sbjct: 192 HLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLF---NALDCRKVAVSRLGK 248 Query: 276 ----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 ++ + + + T+ + D F PL G+F V N L+ A+ + Sbjct: 249 AKADVKPFGEIKSTEDGLEFTLPMIATD-KFETPLCGDFNVDNLLLVLAWAHALCVPEDA 307 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + + + V PGRFE V + G + VDYAHT ++LE +L R++ G++ VFGCG Sbjct: 308 MRKAITTVRV-PGRFEKVWSKD-GKHVIVDYAHTPDALERVLNVARSLCRGKLSTVFGCG 365 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAI 449 GDRD+ KRPIMG IA +AD A +T DNPR+E P I A++ G+ F NR EAI Sbjct: 366 GDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIADVRAGMTTDKFEVVENREEAI 425 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475 A L D LV+AGKGHE I+ Sbjct: 426 NRACAELKSGDWLVIAGKGHEDYQII 451 >gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella frigidimarina NCIMB 400] gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella frigidimarina NCIMB 400] Length = 496 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 157/487 (32%), Positives = 245/487 (50%), Gaps = 29/487 (5%) Query: 14 LINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L+N L + R+ +N ++ DSR ++ G +FVA+ G+K DG FIPQAI GA AI+ Sbjct: 2 LLNDLLAPWFHYSGRESVNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGATAIL 61 Query: 73 VSS----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 + + + + D ++ P++ + LS A++ Y + +++ + +TGT+GK Sbjct: 62 IHTDNPDEHGIVD---RLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +SV+ + QI G + +G + D+ TT I + + LS +++G Sbjct: 119 TSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELC 178 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSHGL Q R++ FTNL RDH+DYH +Y AK RLF+ P + Sbjct: 179 AMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFK--FPSIKHGV 236 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---- 301 I DDA + + + + S+ H+ VT ++ + D Sbjct: 237 INIDDAVGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAG-VTATLHFVEIDSEKS 295 Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGG 356 PL G F + N + A + G A +L L L V GR E F N+ Sbjct: 296 VSVQLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERFSSVNN--A 353 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT +++E LK +R G + VFGCGGDRD+GKRP+M + A AD ++T Sbjct: 354 TLVVDYAHTPDAIEQALKALRLHCKGTLWCVFGCGGDRDKGKRPLMAQAAERYADKVMIT 413 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DN RSEDP+ I +I+ GI + + +RIEAI + + D++++AGKGHET Sbjct: 414 SDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGKGHETYQ 473 Query: 474 IVTNGEK 480 V GE+ Sbjct: 474 EVA-GER 479 >gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL030PA2] Length = 499 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 72 VPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes J165] gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes SK137] gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL074PA1] gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL087PA2] gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL083PA1] gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL046PA2] gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA1] gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA2] gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA1] gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL063PA2] gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL007PA1] gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL056PA1] gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL036PA3] gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA2] gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL037PA1] gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL053PA1] gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL045PA1] gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA2] gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA1] gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA2] gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL005PA3] gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL078PA1] gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL027PA2] gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL002PA3] gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL072PA1] gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL038PA1] gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA2] gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL097PA1] gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL096PA3] gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL013PA2] gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA2] gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL043PA1] gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes HL020PA1] gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Propionibacterium acnes HL099PA1] Length = 499 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 16 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 72 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 128 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 129 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 188 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVG--VINVDDPRGRQLVER 245 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 246 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 301 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 359 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 360 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 419 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 420 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 465 >gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HIMB114] gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [alpha proteobacterium HIMB114] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 24/461 (5%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 M+ +E +DSR ++ +F + N + + F+ I + I S + ++ Sbjct: 1 MKIKEIINRNFCTDSRLLKRNDVFFDFLSNSKKINPFLKSIIKKKPSLIFSSIKVNYRN- 59 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + I N L +LSL + I AVTGT+GK+SVA+F Q+ + Sbjct: 60 -SVISKNIRNL-------YLSLIKKKYKKIPKN-IFAVTGTNGKTSVANFFYQLHILNKK 110 Query: 143 SSFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 IG T+ F + N LTTPS + + L++++ + + V +EASSHGLDQ R Sbjct: 111 PCANIG---TLGYFYNKKRKKNNLTTPSNLDIYNFLNFINKKKIRTVILEASSHGLDQDR 167 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L+G+K FTN +DH+DYH++ +AY N+K++LF + L K+ + + K Sbjct: 168 LNGLKFKGVVFTNFSQDHLDYHKSMKAYLNSKLKLFRQNLKKKGNIVCNDNIKKILIKNK 227 Query: 259 RAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + VL + Y K I++KK ++K + ++ + + F L G+FQ+ N Sbjct: 228 ISKISFKYVLDNKIKYPVKIINVKKN---NSKTLIKLNFKNNIYTFNINLIGQFQIENLY 284 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + L ++ G+ + + LEK+ + GR + ++ I +DYAHT + L+ +L+ + Sbjct: 285 QSIILALSSGLKIKEIFKVLEKVKPIEGRLNIIK--NKKKTICIDYAHTPDGLKKVLETL 342 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + ++ +VFGCGG+RD KR MG+IA L + I+T+DNPR EDP+ I +I + Sbjct: 343 KNHYNKKVNIVFGCGGNRDTDKRKKMGQIANKLCNKVILTNDNPREEDPKNITKQIFKSV 402 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 NR AI+ AI++ +++VL++AGKGHE I N Sbjct: 403 KKAEVIHNRKLAIKKAIKITKEKEVLLIAGKGHENYQIFKN 443 >gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Sphingobacterium spiritivorum ATCC 33300] Length = 484 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 149/485 (30%), Positives = 248/485 (51%), Gaps = 41/485 (8%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +KL+D+++ E++ QL + ++ + DSR G +FVA+ G DGHLF Sbjct: 2 IKLKDILHAIPVQEVVGQLDV--------EVTSLCFDSRKANEGSLFVAVRGVHTDGHLF 53 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 + +AI QG I+V ++ + ++V +T L + A YG + Sbjct: 54 VEKAIEQGCTLIMV------EEMPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKL 107 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + VTGT+GK+++A+ + + G + +G ST+ + + + TTP P+ L Sbjct: 108 VGVTGTNGKTTIATLLFNLFTALG---YHVGLLSTVQNQIGERIIPATHTTPDPVALNAL 164 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L + +G + +E SSH + Q R+ G++ G F+N+ DH+D+H+T Y AK + Sbjct: 165 LRDMVDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKF 224 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F++L + + A+ D+ +++ N + G +G K+ H + + Sbjct: 225 FDDL-DRFAFALTNGDEKNGSVMLQ---NTFAHKKTYGLKGVADFKAKIIESHFDGML-L 279 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++EG + L GEF YN L G I + ++ VL L ++ GRFE + S Sbjct: 280 NIEGHEV--WVKLVGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAI--TS 335 Query: 354 RGGRI-YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G I VDYAHT +++ +L I + +II V GCGGDRD+ KRP M ++A ++ Sbjct: 336 KNGVIGIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMS 395 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465 D I+T DNPR+EDP +I ++ GIP +K +R EAIR A + D+++VA Sbjct: 396 DKVIITSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVA 455 Query: 466 GKGHE 470 GKGHE Sbjct: 456 GKGHE 460 >gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Protochlamydia amoebophila UWE25] Length = 492 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 235/472 (49%), Gaps = 52/472 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++++S+ + G +F+A G DG+ +I +AI GA AI L D Sbjct: 26 LTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSGACAI-------LTDLFDPCLKKVVQ 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ N + S+ A Y E + V TGT+GK++++ ++ + L F GP Sbjct: 79 IIHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTISFIIKYL-----LDLFH-GPC 132 Query: 151 STISSFA--------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 I + Q R TTP I K L +S G +E +SH L Q R++ I Sbjct: 133 GLIGTIEYIVGSHRYQATR-TTPDVIENHKMLYEMSLSGTKSAVMEVTSHALIQKRVEYI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------ESPAIIYADDAYSKEV 256 F+NL DH+DYH T + Y AK LFE L + E AI+ DD + +++ Sbjct: 192 DFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRNEKWAIVNIDDPWCEQI 251 Query: 257 MKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +K GC+ + Y Q I L + ++ +G+ + +PL G Sbjct: 252 VK-----GCQAHRLTYGIDKPADLQASHIKLSS-----QGTSINLTYQGQTIECFWPLLG 301 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F +YN L A G+ + I ++E + + V GR E V N+ IY+D+AHT ++ Sbjct: 302 RFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKV-LNNLELDIYIDFAHTDDA 360 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +LK + I GR++ +FGCGGDRD KRP M + +D++IVT DNPRSE+P I Sbjct: 361 LSNVLKTLSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYSDLSIVTSDNPRSENPISI 420 Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 EI+ G FI + +R AI+ AIE+ + D++++AGKGHET I+++ Sbjct: 421 CQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKGHETYQILSH 472 >gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus SK60] Length = 520 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 164/505 (32%), Positives = 250/505 (49%), Gaps = 67/505 (13%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 PE + QL + P+ + + DSR + G +FV + L + + +A Sbjct: 13 LPESVRQL-LNPVM--NQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDL-EKVAGYLAQ 68 Query: 71 IVVSSAYSLQDFSAT-IRSN--TPILVVDNTRKFL-SLFASRLYGKHPEN---ILAVTGT 123 + +A+ L + + I+S PI+ + R FL SL + L +HP ++AVTGT Sbjct: 69 VSDKAAFVLSEIDVSAIQSQFMLPIIYLPTIRDFLGSLIQTSLQQQHPTQLPAVIAVTGT 128 Query: 124 SGKSSVASFVQQICQRSGLSSFQIG-------PTSTISSFAQDNRLTTPSPIYLAKALSY 176 +GK++V+ V Q+ +SG+ + +G P T S+ TT L A+ Sbjct: 129 NGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTH------TTLEVFNLQHAIDD 182 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + QGV +++EASSHGL Q RL G+ + FTNL RDH+DYH Y AK RLF++ Sbjct: 183 FAKQGVQALAIEASSHGLHQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARLFDK 242 Query: 237 L-LPKESPAIIYADDAYSKEVMKRAHNAG-----------------CRVLSVGYQGKFIH 278 P + AII DD +S E+M A NA + + QG + Sbjct: 243 AHFPTLTHAIINLDDEFS-ELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGGDLT 301 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + A+ + ++T++ PL G F V N L + A+ +A+ L + Sbjct: 302 IALSKAVTPQGELTVNS---------PLLGRFNVANLLASIAGAFALSQSAAMGLSVAQI 352 Query: 339 LHVVP------GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 VP GR + V + S VDYAHT ++LE +L ++++ +G + VFGCGG Sbjct: 353 QAAVPTLRGATGRMDRVPSTSSC--FIVDYAHTPDALEQVLTSLKSHCTGELWAVFGCGG 410 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRI 446 DRD+GKRP+M + L LAD I+T DNPRSEDP I ++ G+ IE +R Sbjct: 411 DRDKGKRPLMAQAGLRLADKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEP-DRQ 469 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHET 471 +AI A++ D++V+AGKGHET Sbjct: 470 KAIEYAVQHAKPSDIVVIAGKGHET 494 >gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M23] gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23] gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 491 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 162/468 (34%), Positives = 231/468 (49%), Gaps = 41/468 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79 Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ S+ Sbjct: 12 QARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSV 71 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136 D + + V R L A R +G HP ++ VTGT+GK+S + Q Sbjct: 72 PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 121 Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 R G+ S G T + + Q TTP + L + L L G V++E SSH L Sbjct: 122 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD + Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDLFGL 238 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305 ++ N G R + V G A Q ++++++G FD + P Sbjct: 239 RLLHGLAN-GVRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADRAPVRSP 291 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F V N L AG+ A+ + + L L + GR +G + VDYAHT Sbjct: 292 LMGRFNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 351 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED Sbjct: 352 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDG 411 Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + I A+I+ G P ++ + +R AI AI + + DV+++AGKGHE Sbjct: 412 DGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 459 >gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9202] Length = 511 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 144/479 (30%), Positives = 244/479 (50%), Gaps = 40/479 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ IN +S +S+ +Q G +F+ + G DG F +AI GAEA ++ A + Q + Sbjct: 23 DQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPA-AKQKIGSID 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 R ILV+D+ ++ + P ++ VTGT+GK+++ ++ + ++ G Sbjct: 82 RKR--ILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGKTTITFLLEYLLKKLGKK 139 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G + F++ TT L K L+ +E SSH + Q R+ G Sbjct: 140 TALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSSHSIAQKRISGC 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAY----SKEV 256 + A FTNL +DH+DYH ++YF K +LF L K+ +++ DD + S ++ Sbjct: 200 EFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGISVLNHDDPWISKLSSDL 259 Query: 257 MKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPL 306 KR+ ++ ++ KF C H K+++ + V PL Sbjct: 260 EKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKEKIQLFV---------PL 310 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRG-GRIYVD 361 GEF + NA+ A + + + + + PGR E + + SR + VD Sbjct: 311 VGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSRSLPTVIVD 370 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + L+ +L++I+ + G++I VFGCGGDRD GKRP+MG IA + +D +T DNPR Sbjct: 371 YAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQLFITSDNPR 430 Query: 422 SEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 SE+P+KI +I+ GI + + +R +AI +I+ NK+D++++AGKGHE I+ + Sbjct: 431 SEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKGHEDYQILND 489 >gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Propionibacterium acnes 266] Length = 529 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 40/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++ G ++V + G G F A+ GA A++ + + + Sbjct: 46 ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 101 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 PI+VVD+ R +++ A++++G+ + + +TGT+GK++ A V+ + +G + Sbjct: 102 VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAG---HHV 158 Query: 148 GPTSTISSFAQDNR--------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G TI F D +TTP L + ++ +G + V +E SSH L R+ Sbjct: 159 GTIGTIG-FRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRV 217 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG +FTNLGRDH+D+H T YFNAK RLF L + +I DD +++++R Sbjct: 218 DGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARV--GVINVDDPRGRQLVER 275 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G + ++ YQ + AI + +S + LPGEF V Sbjct: 276 MQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFD-----VSTPSGERTLELSLPGEFNVR 330 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA +A + A G+ V + L V PGR E V VD+AHT ++ L Sbjct: 331 NAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASAL 389 Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 R+ + GR+I V G GGDRD KR MG+IA + ADI IVTDDNPR+EDP IRA + Sbjct: 390 DAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAV 449 Query: 433 IHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G I+ G R EAI A+ M DV+ V GKGHET Sbjct: 450 LEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHET 495 >gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis 961-5945] gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Neisseria meningitidis G2136] Length = 492 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDKVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Weeksella virosa DSM 16922] Length = 488 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 244/481 (50%), Gaps = 41/481 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E+ DSR + G +FVAI G + DGH +I Q G IV +Q + N Sbjct: 25 VGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQVTEIGVSVIVCEVLPEIQ------KEN 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQI 147 ++V++ L + AS Y +N+ V T S + ++ + G +S + Sbjct: 79 IVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTNGKTTTTSLLYELFTKLGYASVLV 138 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 STI + + TTP + L + +G + +E SSHG+ Q+R+ G+ Sbjct: 139 ---STIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCEYAFMEVSSHGIVQNRIAGLY 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTN+ DH+DYH T Q Y AK + F+E LP + A++ DD + VM + A Sbjct: 196 FRVAAFTNITHDHLDYHITFQNYIQAKKKFFDE-LPASTKALVNLDDRNGR-VMLQNTVA 253 Query: 264 GCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++ ++GK + + + N Q +F L G+F YN L+ Sbjct: 254 SKHFFTLKGDAEFKGKILESRFDGMLLNFNQQ---------EFWTNLIGQFNAYNLLLVY 304 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRT 378 G+ +G + VL L L V GRF+ T +G R I VDYAHT ++LE +L I Sbjct: 305 GIAHLLGQEDTEVLTILSVLGSVEGRFQTFHT--QGDRVIIVDYAHTPDALENVLDTIGG 362 Query: 379 ITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + ++I V GCGGDRD+ KRP M IA +D+AI T DNPR+E+PE I A++ G+ Sbjct: 363 IRTKNEQLITVVGCGGDRDKTKRPEMADIAARKSDLAIFTSDNPRTENPEAILADMEAGV 422 Query: 437 -PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 P F +K +R EAI+TA++M K D++++AGKGHET + NG + D ++ +E Sbjct: 423 EPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKGHETYQEI-NGVRNHFSDVEVAKE 481 Query: 492 I 492 + Sbjct: 482 L 482 >gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205] Length = 499 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 150/466 (32%), Positives = 233/466 (50%), Gaps = 39/466 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + N DSR + +G IF+A+ E F +A+ GA A++ SA L++ Sbjct: 17 WVSQPFNGFCLDSRKVASGQIFIALNSYSQPEKTIEFAQKALDSGALAVISESALGLKNE 76 Query: 83 SATIRSNTPILVVDNTRKFLSLFASR-LYGKHPENIL---AVTGTSGKSSVASFVQQICQ 138 V R + + + L P L AVTGT+GK++++ V ++ Sbjct: 77 ----------WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAELIS 126 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 GL +G T I + TT + L AL + QG V++EASSHGL+Q Sbjct: 127 SQGLGCAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL+G + ++NL RDH+DYH T AY AK LF+ K +I DD Y+ ++ Sbjct: 187 RLNGCDIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKA--VVINLDDQYASIML 244 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPG 308 K A N + + Y L + A ++ + + G F + P L G Sbjct: 245 KAAKNNPSQPKILTYS-----LTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLG 299 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F V N L + G D A +++ + +L PGR + + + R VDYAHT ++ Sbjct: 300 QFNVENLLASLIAAEYAGFDLADLVKFVPELKGAPGRMQVIQDHER--LFVVDYAHTPDA 357 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +L ++ +G++ VFGCGGDRD+GKRP+M + ALD A+ ++T DNPR+E+PE+I Sbjct: 358 LIQVLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQI 417 Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 A++ HG+ E +R EAI+ ++ D++V+AGKGHE Sbjct: 418 FADMKHGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKGHE 463 >gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Neisseria meningitidis alpha153] Length = 492 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 229/478 (47%), Gaps = 36/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FSATIRSNT 90 SDSR I+ G IFVA G DG +IP A+A GA A+ D F+ Sbjct: 28 SDSRQIKQGDIFVACPGEYADGRSYIPAAVANGA-------AFVFWDDDGKFAWNPEWKV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + + + + A+++YG + + VTGT+GK+S+ ++ Q G + +G Sbjct: 81 PNQGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVG 140 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++ TTP+P+ + L QG T ++E SSHGLDQ R++G+ + Sbjct: 141 TVGNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSA 200 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY K RLF K A+I DD Y E+ R C Sbjct: 201 IFTNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKH--AVINVDDEYGAELAGRLKK-DCPD 257 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L+V G H A T S +G F P L G F N Sbjct: 258 LAVYSYGFSEH-----ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAAC 312 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L A G VL+ L K+ GR + + NS + VDYAHT ++LE L ++ Sbjct: 313 IALLCANGYPLDNVLDVLAKIRPASGRMDCI-MNSGKPLVVVDYAHTPDALEKALATLQE 371 Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 I + VFGCGG+RD+GKR +MG A+ AD +VT DNPR E+P I +I+ + Sbjct: 372 IKPQGAALWCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAV 431 Query: 437 PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 P + +R AIR A+E D++++AGKGHE V + + S D +I+ + L Sbjct: 432 PAPECVEADRAAAIRYAVEQAAANDIILIAGKGHENYQDVQGVKHRFS-DLEIVGQAL 488 >gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa Temecula1] Length = 495 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 162/468 (34%), Positives = 231/468 (49%), Gaps = 41/468 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79 Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ S+ Sbjct: 16 QARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSV 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136 D + + V R L A R +G HP ++ VTGT+GK+S + Q Sbjct: 76 PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125 Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 R G+ S G T + + Q TTP + L + L L G V++E SSH L Sbjct: 126 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD + Sbjct: 185 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAH--QDVQAAVINVDDLFGL 242 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305 ++ N G R + V G A Q ++++++G FD + P Sbjct: 243 RLLHGLAN-GVRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADRAPVRSP 295 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F V N L AG+ A+ + + L L + GR +G + VDYAHT Sbjct: 296 LMGRFNVDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 355 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR ED Sbjct: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDG 415 Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + I A+I+ G P ++ + +R AI AI + + DV+++AGKGHE Sbjct: 416 DGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 463 >gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Moraxella catarrhalis RH4] Length = 520 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ DSR I FV + +++D + A + ++ S+A+ + +F Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98 Query: 89 ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140 PI+ V N R +L L A+RL H I+AVTGT+GK++V+ + Q+CQ S Sbjct: 99 LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158 Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G+SS +G + Q TT + + ++ +GV +++EASSHGLDQ+R Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 L G+ +I +TNL RDH+DYH +Y +AK +LF++ L P ++ DD + + Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274 Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A +++ Q + K V + ++ + + + PL G F V N Sbjct: 275 FDYETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNL 334 Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L + A+ A L +L +L GR + +S+ G +DYAHT ++L+ +L Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ I + +R AI A++ K D++V+AGKGHET Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494 >gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erwinia amylovora ATCC 49946] gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Erwinia amylovora ATCC 49946] gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Erwinia amylovora CFBP1430] Length = 495 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 157/491 (31%), Positives = 238/491 (48%), Gaps = 36/491 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR +G +FVAI G+ DG FIPQAIAQG A++ + + D Sbjct: 19 ERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGAANDGQIVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + + LS A R + + P L + G +G + + Q + Q + L Sbjct: 79 MHGVPVIYLAQLSQRLSALAGRFH-QQPGAKLKLIGVTGTNGKTTTTQLLAQWAQL---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + TT S + + L+ L +G + ++E SSHGL QHR Sbjct: 134 LGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLAAMEISSHGLVQHR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A +FTNL RDH+DYH Y +AK LF E + AII ADD + ++ Sbjct: 194 VAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTE--HQVGQAIINADDEVGRRWLQ 251 Query: 259 RAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A L G G+++ KV V + D L G F V N Sbjct: 252 KLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHIDSRLMGAFNVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 LVA +++ + + +L V GR E + + VDYAHT ++LE L Sbjct: 312 LLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKP-TVVVDYAHTPDALEKALA 370 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R GR+ +FGCGGDRD+GKRP+MG IA AD+ ++T+DNPR E+P I +I+ Sbjct: 371 AARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITNDNPRGEEPAAIVGDILS 430 Query: 435 G---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G IPG R +A+ + + D+++VAGKGHE I+ + S D Sbjct: 431 GLLDAGRARVIPG------RAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDYS-D 483 Query: 486 CDIIREILGLI 496 D + +LG++ Sbjct: 484 RDTVARLLGVL 494 >gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa M12] gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Dixon] gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Xylella fastidiosa M12] Length = 491 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 232/472 (49%), Gaps = 49/472 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79 Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ S+ Sbjct: 12 QARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 71 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136 D + + V R L A R +G HP ++ VTGT+GK+S + Q Sbjct: 72 PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 121 Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 R G+ S G T + + Q TTP + L + L L G V++E SSH L Sbjct: 122 WHRLGVRSATCG-TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSSHAL 180 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD + Sbjct: 181 DQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDLFGL 238 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDFLF------ 304 ++ H V VG VC + Q ++++++G FD + Sbjct: 239 RLL---HGLAKGVRRVGV--------SVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAP 287 Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL G F V N L AG+ A+ + + L L + GR +G + VD Sbjct: 288 VRSPLMGRFNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVD 347 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++L +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR Sbjct: 348 YAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPR 407 Query: 422 SEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ED + I A+I+ G P ++ + +R AI A+ + + +DV+++AGKGHE Sbjct: 408 GEDGDGIVADILAGFVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKGHE 459 >gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale ART12/1] Length = 340 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 188/355 (52%), Gaps = 43/355 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172 ++ VTGT+GK+S ++ I +++G +++G TI +D + TTP I L + Sbjct: 3 MIGVTGTNGKTSSTYMLRDILRKAG---YKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQE 59 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + Q + +V +E SSH LD +R+ G + FTNL +DH+DYH+T + Y AK + Sbjct: 60 ILDKMYKQNIDYVVMEVSSHALDMNRIAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAK 119 Query: 233 LFE-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 LF+ L+ A+I DD + + M + C +++ G + A+ Sbjct: 120 LFDSLSAPNLVKSNKNAVINLDDEFGSKTM--IEHTKCNLITYGIKND--------AVLK 169 Query: 288 KQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + V I G FD F + G F VYN L G+ +A I ++ E LE Sbjct: 170 AENVEIKASGASFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEA 229 Query: 339 LHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 V GRFE V R G+ + VDYAHT + LE +LK R I R+IVVFGCGGDRD Sbjct: 230 FEAVAGRFELV----RQGQDFSVIVDYAHTPDGLENVLKTAREIAKKRLIVVFGCGGDRD 285 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNR 445 + KRPIMG+IA LAD+ I T DNPR+EDPE I +E+ G+ F EK +R Sbjct: 286 RTKRPIMGRIAAQLADVVIATSDNPRTEDPEFILSEVEAGVLPALHGNFHEKNHR 340 >gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662] gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp. 3_2_56FAA] Length = 486 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 247/483 (51%), Gaps = 36/483 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I+ + DSR ++ +FV I G DGH FI Q I +GA+ IVV QD A Sbjct: 20 DTEISTLVYDSRKVEENSVFVCISGAAFDGHKFIGQVIEKGAKVIVVQ-----QDVEAP- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 ++ D+TRK L+ ++ +G E ++ + T K +Q + + +G + Sbjct: 74 -KGVTVIRFDDTRKALAEMSAAYFGYPAEELMTIGITGTKGKTTITYMIQSVLEHAGQKT 132 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG TI + D R+ TTP + ++ ++ G +V +E SS GL HR+ Sbjct: 133 GLIG---TIETVIGDERIPSVNTTPESYVIQESFRKMADAGCKNVVMEVSSQGLMLHRVS 189 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G G FTNL DHI + H+ Y K LF++ I+ DD Y + ++K Sbjct: 190 GFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQQC----RQGIVNGDDDYVERIIK 245 Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYN 314 H C + + G + G ++ + I + +S + K +++ +PG+F VYN Sbjct: 246 -GHT--CSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGKEEYNVHVDIPGDFTVYN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A LC +GI VL+ L + V GR E + T + +DYAH + SLE +L Sbjct: 303 SLAAISLCRHMGIQKKDVLDALNTIQV-KGRLEIIKTPGEY-TLMIDYAHNAMSLESLLT 360 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 IR +I +FGCGG+R + +R MG+++ LAD+ +VT DNPR+E+P I +I+ Sbjct: 361 TIRKYDPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDILV 420 Query: 435 GI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ PG ++ +R EAIR +E K D++++AGKGHE + G K + D+IR Sbjct: 421 GVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKGHEDYQEI-RGVKHHMDERDLIR 479 Query: 491 EIL 493 EI+ Sbjct: 480 EII 482 >gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC8] Length = 520 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ DSR I FV + +++D + A + ++ S+A+ + +F Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98 Query: 89 ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140 PI+ V N R +L L A+RL H I+AVTGT+GK++V+ + Q+CQ S Sbjct: 99 LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158 Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G+SS +G + Q TT + + ++ +GV +++EASSHGLDQ+R Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 L G+ +I +TNL RDH+DYH +Y +AK +LF++ L P ++ DD + + Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274 Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A +++ Q + K V + ++ + + + PL G F V N Sbjct: 275 FDYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNL 334 Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L + A+ A L +L +L GR + +S+ G +DYAHT ++L+ +L Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ I + +R AI A++ K D++V+AGKGHET Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494 >gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 502 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 30/484 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRS 88 I ++ S + G +FVAIVG++ DG +IPQA++QGA AI+ + + D S Sbjct: 30 IKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQIQ 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG------- 141 PI+ + N ++LS A Y HP + L + G +G + + Q + Q + Sbjct: 90 GVPIVYLFNLNQYLSQLAGEFY-HHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEVSA 148 Query: 142 -LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L + G +SS N+ TT S I + + LS + + T ++E SSH L QHR+ Sbjct: 149 VLGTLGNGLLRQLSS----NQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVA 204 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKR 259 + A F+NL RDH+DYH Y AK LF L ES II DD + + Sbjct: 205 ALPFAASVFSNLSRDHLDYHGDMANYEIAKKSLF---LDHESKNHIINVDDEVGQRWLPE 261 Query: 260 AHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 NA + G QG ++ +K+ N + + PL G F V N Sbjct: 262 LPNAVAVSTSHQIPSGLQGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNI 321 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L+ +A+ +L+ KL +PGR E R + VDYAHT ++L+ L Sbjct: 322 LLTLATLLALKYPLDALLKAASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAA 380 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R G++ +FGCGGDRD+GKRP+MGKIA LAD ++TDDNPR+E P+ I A+I+ G Sbjct: 381 SRMHCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITADILKG 440 Query: 436 I-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + I+ +R EAI + +DV+++AGKGHE + + + S + R Sbjct: 441 VLKTDRASVIQ--DRTEAITHILNQAMPEDVILIAGKGHEVYQFIEHQKLDYSDRATVAR 498 Query: 491 EILG 494 + G Sbjct: 499 LMEG 502 >gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 511 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 142/496 (28%), Positives = 252/496 (50%), Gaps = 47/496 (9%) Query: 14 LINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L++ + I P + +++IN +S +S+ +Q G +F+ + G DG + +AI GAEA + Sbjct: 9 LLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAAI 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + SA + +I +++ DN S + + + + VTGT+GK+++ Sbjct: 69 IGSAAKQK--IGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTIT 126 Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ + ++ G + G + F++ TT L K L+ +E Sbjct: 127 FLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILEV 186 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIY 247 SSH + Q+R+ G + A FTNL +DH+DYH ++YF K +LF L K+ +++ Sbjct: 187 SSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVLN 246 Query: 248 ADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHN-KQQVTI 293 DD + S ++ KR+ ++ ++ +F C H K+++ + Sbjct: 247 HDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEKIKL 306 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TN 352 V PL GEF + NA+ A + + + + ++ PGR E + N Sbjct: 307 FV---------PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDN 357 Query: 353 SRGGR----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + R + +DYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + Sbjct: 358 NDVSRSLPIVIIDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDRSKRPLMGSIAEE 417 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDV 461 +D +T DNPRSE+P++I +I+ G IEK +R +AI +I+ NK+D+ Sbjct: 418 FSDHVFITSDNPRSEEPQQIVNDILMG----IEKREKITFDIDRFKAINESIKFANKEDI 473 Query: 462 LVVAGKGHETVHIVTN 477 +++AGKGHE I+ + Sbjct: 474 VLIAGKGHEDYQILND 489 >gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 103P14B1] gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 46P47B1] gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC1] gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis BC7] gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis O35E] gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis 101P30B1] Length = 520 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 150/462 (32%), Positives = 239/462 (51%), Gaps = 26/462 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ DSR I FV + +++D + A + ++ S+A+ + +F Sbjct: 40 QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNA-NRYLMSVKDSAAFVISEFDLVGLD 98 Query: 89 ----NTPILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRS 140 PI+ V N R +L L A+RL H I+AVTGT+GK++V+ + Q+CQ S Sbjct: 99 LDGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQAS 158 Query: 141 GLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G+SS +G + Q TT + + ++ +GV +++EASSHGLDQ+R Sbjct: 159 GISSAVMGTAGNGRLGQLIQSAN-TTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYR 217 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVM 257 L G+ +I +TNL RDH+DYH +Y +AK +LF++ L P ++ DD + + Sbjct: 218 LQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDD---EPAL 274 Query: 258 KRAHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A +++ Q + K V + ++ + + + PL G F V N Sbjct: 275 FDYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNL 334 Query: 316 LVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L + A+ A L +L +L GR + +S+ G +DYAHT ++L+ +L Sbjct: 335 LASMAAFTALNPARAADLPNLITQLQGARGRMQ--RASSQTGAFIIDYAHTPDALKQVLS 392 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++R +GR+I VFGCGGDRD+GKRP M + L AD I+T DNPRSE P I A++ Sbjct: 393 SLRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQK 452 Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ I + +R AI A++ K D++V+AGKGHET Sbjct: 453 GLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHET 494 >gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 484 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 242/484 (50%), Gaps = 60/484 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + +++ DSR+I+ F A G D H F + A G VV+ + ++ Sbjct: 22 ETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYASGKVPFVVAE-HKIE------ 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P +VV++ RK L+ +GK E + +AVTGT+GK++ + +I + +G S Sbjct: 75 --GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNGKTTTTYIINEILKTAGRKS 132 Query: 145 FQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +G T D++ TTP K L G + +E SSH L QHR+ Sbjct: 133 VLVGTTGV----KYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDTLVMEVSSHALHQHRI 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK 258 +G+ FTNL DH+DYH+T YF AK LF P+ S +I D + + ++K Sbjct: 189 NGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILF---TPEYSRVGVIGKDSEFGERLLK 245 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFP-------- 305 A V V Y I NK ++T + G F++P Sbjct: 246 EAE-----VDRVSY-----------GITNKSEITAEEIWFGLSGLRAKFVYPAGSIEMES 289 Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G + N + A CI +GID+ + +E+L VPGR E S G I+VD+AH Sbjct: 290 SLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKF-EKSNGAYIFVDFAH 348 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++L+ +L+ + + R+I VFGCGGDRD+ KRP M K A +D+ IVT DNPR+ED Sbjct: 349 TDDALKNVLEALGSFKENRVITVFGCGGDRDRSKRPRMAKTAELDSDVVIVTSDNPRTED 408 Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+++ +I+ G I +R +AI+ A+EM +D++++AGKGHE I+ G +K Sbjct: 409 PQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKGHEDYMIL--GTEK 466 Query: 482 MSVD 485 + D Sbjct: 467 IHFD 470 >gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas haloplanktis TAC125] Length = 492 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 243/477 (50%), Gaps = 36/477 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ + DSR + G +FVAI G++ DG FI +AI GA AI+ A L +F + Sbjct: 18 QQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVAII---ADRLCEFETSFE 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+ +V K L ASR Y + H +++ VTGT+GKS+ + + + Q S Sbjct: 75 ---PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKSTTTAMIAHLAQFCNSQSA 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T+ DN TTPS + L + L+ L Q V++E SSHGL Q R+ Sbjct: 132 IIG---TLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAMEVSSHGLVQQRVAQ 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRA 260 + A FTNL RDH+DYH Y +AK+ LF++ P+ ++ DD + + + K + Sbjct: 189 CQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPEL--VVLNQDDGQTDQWLEKYS 246 Query: 261 HNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 N+ ++ G + +F++ V ++ D PL GEF +YN Sbjct: 247 FNS---LVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIKSPLFGEFNLYN 303 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A + +G A ++ +L V GR + + I VDYAHT +L + L+ Sbjct: 304 LTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTCI-VDYAHTPEALALALQ 362 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ G + VFGCGGDRD+GKR +M + A AD I+T DNPRSE+P+ I A++ Sbjct: 363 ALQQHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNADKVIITSDNPRSENPDAIIADVAQ 422 Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ ++E +R AI AI +V+++AGKGHE I+ G++++ CD Sbjct: 423 GLAQPTKAYLE-ADRATAISYAISNAKADEVILIAGKGHEDYQII--GDQRIDF-CD 475 >gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822] Length = 496 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 164/493 (33%), Positives = 254/493 (51%), Gaps = 19/493 (3%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL++L+ I Q+ P E+++ +S++S Q G +F+ + G + DG F Sbjct: 1 MKLRELL--TLIPTITQIPEHPA--LEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117 AI GA A ++S A +LQ + T + ++ V++ + A+ YG +P + Sbjct: 57 SSAIEAGAIAAIISPAAALQ-YPPT--GDAYVIQVEDVVSVCAEIAAAFYG-YPARQMKM 112 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ + + +G T + + Q TTP L + L+ Sbjct: 113 IGVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQ 172 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G + +E SSH L Q R+ FTNL +DH+D+HQ + YF AK +LF Sbjct: 173 ALKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSA 232 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 K AII DD Y K ++ SV + + +C N + Sbjct: 233 EYLK-GKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTP 291 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F PL G++ + N L A G +++G+D ++++L VPGR E V + + Sbjct: 292 IGEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQD 351 Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP MGKIA +LAD+A+V Sbjct: 352 ISVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVV 411 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPR+EDP++I +I+ GIP ++ +R AI AI D +++AGKGHE Sbjct: 412 TSDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDY 471 Query: 473 HIVTNGEKKMSVD 485 I+ G +K+ D Sbjct: 472 QIL--GTEKIHFD 482 >gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita akajimensis DSM 45221] Length = 533 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 237/463 (51%), Gaps = 37/463 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ + +DSR + G +F AI G + DG+ +I +A+ +GA AI+ QD Sbjct: 59 DREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVDRGAVAIITE-----QDLG--- 110 Query: 87 RSNTPI--LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS-- 140 S+ PI + V++ R L++ A YG+ E + VTGT+GK++V+ VQ + Sbjct: 111 -SHFPIDYIQVEDVRMALAVVAREFYGRPDERLGLTGVTGTNGKTTVSMLVQHLIGGDDK 169 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + IGP T+ SF TTP + + LS + G +E SSHG+DQ Sbjct: 170 VGLIGTIRYDIGP-RTLPSFR-----TTPESVDVYALLSQMEDGGCKDAVMEVSSHGVDQ 223 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADDAYS 253 R+ G+ + F NL +DHIDYH++ +AY+ AK LF +P A++ D AY Sbjct: 224 KRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVPHS--AVVNMDCAYG 281 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++ R L+ G + +KV + + + + G + PL G + V Sbjct: 282 RRLLTEL-PGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQATVVSPLLGRYNV 340 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A A G + +++ + VPGR E + + + VDYAHT ++L+ Sbjct: 341 SNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELI-HEKQPYNVLVDYAHTDDALKNA 399 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R IT G++IVVFGCGGDRD+ KR +M K L+ AD T DNPRSE E+I ++ Sbjct: 400 TGMLREITPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNPRSESVEQIFEDM 459 Query: 433 IHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471 G +++ IE AI A++ D +++AGKGHE+ Sbjct: 460 RLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKGHES 502 >gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni CNB-2] Length = 501 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 240/472 (50%), Gaps = 47/472 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R ++ +DSR ++AG FVA G DG ++ +A+ QGA A++V A LQ F Sbjct: 19 RSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVE-ADGLQAFDL- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136 S I + + L A + + HP ++LAVTGT+GK++ A ++ + Sbjct: 77 --SGDSIAALKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133 Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 R+G + + +G + S +TTP P+ L +A + QG+ ++EASS G Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +HRLDG K+ FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAVVNIDDAHG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R V SV QG + K + T+ G L G++ V Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307 Query: 313 YNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNS 368 N L +A C+ + ++ A ++ L VPGR + + + G+ + VDYAHT ++ Sbjct: 308 SNLLGVLATLRCLGLTLEQA--VQACADLEPVPGRMQQI---VKPGQPLVAVDYAHTPDA 362 Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 LE L+ ++ G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE P Sbjct: 363 LEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVP 422 Query: 426 EKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470 E I +I+ G ++ G + AI AI + +DV+++AGKGHE Sbjct: 423 ESIIDQILAG----MQAGQALHVQADRAAAIAQAIARADARDVVLIAGKGHE 470 >gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9515] gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9515] Length = 511 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 141/492 (28%), Positives = 245/492 (49%), Gaps = 37/492 (7%) Query: 13 ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L++ + I P + + KIN +S +S+ +Q G +F+ + G DG + +AI GAEA Sbjct: 8 KLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 ++ SA + +I +++ DN + + + + + VTGT+GK+++ Sbjct: 68 IIGSAAKQK--IGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + ++ G + G + F++ TT L K L+ +E Sbjct: 126 TFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246 SSH + Q+R+ G + A FTNL +DH+DYH ++YF K +LF L K+ +++ Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVL 245 Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293 DD + S ++ K + ++ ++ KF C H ++ Sbjct: 246 NIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPRE--- 302 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---- 349 PL GEF + NA+ A + + + + ++ PGR E + Sbjct: 303 -----KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDN 357 Query: 350 -GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +S + VDYAHT + L+ +LK+I+ + G++I VFGCGGDRD KRP+MG IA + Sbjct: 358 DDVSSLLPTLIVDYAHTPDGLKKVLKSIKKLCEGKLITVFGCGGDRDCSKRPLMGSIAAE 417 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVA 465 +D +T DNPRSEDP+KI +I+ GI + + +R +AI +I+ NK+D++++A Sbjct: 418 FSDHLFITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIA 477 Query: 466 GKGHETVHIVTN 477 GKGHE I+ + Sbjct: 478 GKGHEDYQILND 489 >gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Comamonas testosteroni S44] Length = 501 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 239/472 (50%), Gaps = 47/472 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R ++ +DSR ++AG FVA G DG ++ +A+ QGA A++V A LQ F Sbjct: 19 RSRVQGDLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVE-ADGLQAFDL- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136 S I + + L A + + HP ++LAVTGT+GK++ A ++ + Sbjct: 77 --SGDSIAALKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133 Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 R+G + + +G + S +TTP P+ L +A + QG+ ++EASS G Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +HRLDG K+ FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPAAVVNIDDAHG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R V SV QG + K + T+ G L G++ V Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307 Query: 313 YNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNS 368 N L +A C+ + ++ A ++ L VPGR + + + G+ + VDYAHT ++ Sbjct: 308 SNLLGVLATLRCLGLTLEQA--VQACADLEPVPGRMQQI---VKPGQPLVAVDYAHTPDA 362 Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 LE L+ ++ G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE P Sbjct: 363 LEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVP 422 Query: 426 EKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470 E I +I+ G ++ G + AI AI +DV+++AGKGHE Sbjct: 423 ESIIDQILAG----MQAGQALHVQADRAAAIAQAIARAEARDVVLIAGKGHE 470 >gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 517 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 239/463 (51%), Gaps = 35/463 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S + G +F A+ G + G F A EA + + + P+LVV Sbjct: 32 NSAALPPGGLFAALPGTRVHGARF-----AADTEAAAILTDAEGKRILNDAGEKRPLLVV 86 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ R L ++ +Y HP IL VTGTSGK++ + ++ +G S IG T T Sbjct: 87 EDIRAILGAVSAEIY-SHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVGLIGTTGT 145 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I+ LTTP L + + + S+GVTHV +E SSH L R+ G + G FTN Sbjct: 146 RINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGTRFDVGGFTN 205 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSV 270 L +DH+D+H T + YF AK LF+ P+ + ++I DD + + + +RA +S Sbjct: 206 LSQDHLDFHPTMEDYFEAKALLFDG--PQAADRSVICVDDEWGRRMAQRAAARPVIRVST 263 Query: 271 GYQGKFIHL---KKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323 QG + + + QQV +++ + F+F P+PG F + NA +A G+ Sbjct: 264 TPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAALATGMAA 323 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 +IGI+ + LE +EK+ VPGR E V RG VDYAH ++ +L+ +RT Sbjct: 324 SIGIEPQVFLEGVEKV-AVPGRMERV---DRGQDFVAVVDYAHKPAAIAAVLETLRTQLE 379 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 ++GRI +V G GGDRD KRP+MG A AD+ +VTDDNPR+EDP IRA ++ G Sbjct: 380 GSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRAAVLAGAQE 439 Query: 437 --PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P E G+R +AI + D ++V GKGHE ++ Sbjct: 440 ANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLI 482 >gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Aminomonas paucivorans DSM 12260] Length = 507 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 240/496 (48%), Gaps = 52/496 (10%) Query: 1 MKLQDLIYK-----DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55 M L DL+ + P+L++ P W I+ V S ++ G +F + G K D Sbjct: 1 MYLNDLLARLHEDPSSPKLLSPRGDNP--W----IDRVVHHSGNVAPGSLFACVSGGKAD 54 Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH F A+ +GA A+ V A L + R+F+ A+ LYG+ + Sbjct: 55 GHRFAASALDRGAVALCVERALDLPVPQVVVPD---------VRRFMGRLAAVLYGEPAQ 105 Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169 + + +TGT+GKS+ ++ + Q +G+ + +G TI D L TTP Sbjct: 106 RLTHVGITGTNGKSTTTYMLRSVLQSAGVKTGLLG---TIVYHDGDKELEADRTTPENTD 162 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + L+ + S G +E SSHGL+Q R++G + G FTNL +H+DYH T++AYF A Sbjct: 163 IQSFLARMVSNGCGACVMETSSHGLEQGRIEGCRFDRGGFTNLSPEHLDYHGTEEAYFQA 222 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--------RVLSVGYQGKFIHLKK 281 K LFEE + DDAY + +++ A+ R +G K L Sbjct: 223 KKLLFEEYMKPSWKGASNRDDAYGRRLLE-AYPENLVGYTREEPRPGDLGATLKSFDLTG 281 Query: 282 VCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 +C +T+ +G+ + PL G + V NAL A L + ID + L + Sbjct: 282 MCL-----DLTLP-DGRVLPEVHLPLIGTYNVENALACAALARTLDIDGETIRRGLASMP 335 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 VPGR E G +DYAHT + LE +L +R + G++ VFG GG+R R Sbjct: 336 QVPGRLERYSLPG-GVTCVIDYAHTPDGLEKVLSTLRHVCRGQLWSVFGHGGERTTSHRK 394 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454 +G+ A LAD +VT DNPRSEDP I +I+ GI G + + +R EAIR A++ Sbjct: 395 ALGEHAGRLADRVVVTMDNPRSEDPGAIAEQIVGGIQGSGAATPWEVRLDRGEAIRFALD 454 Query: 455 MLNKQDVLVVAGKGHE 470 DV++V+GKG E Sbjct: 455 GAQPGDVVLVSGKGPE 470 >gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Corynebacterium aurimucosum ATCC 700975] Length = 500 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 240/465 (51%), Gaps = 35/465 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S + G +F A+ G + G F A EA + + + P+LVV Sbjct: 15 NSAALPPGGLFAALPGTRVHGARF-----AADTEAAAILTDAEGKRILNDAGEKRPLLVV 69 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++ R L ++ +Y HP IL VTGTSGK++ + ++ +G S IG T T Sbjct: 70 EDIRAILGAVSAEIY-SHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYSVGLIGTTGT 128 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I+ LTTP L + + + S+GVTHV +E SSH L R+ G + G FTN Sbjct: 129 RINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGTRFDVGGFTN 188 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSV 270 L +DH+D+H T + YF AK LF+ P+ + ++I DD + + + +RA +S Sbjct: 189 LSQDHLDFHPTMEDYFEAKALLFDG--PQAADRSVICVDDEWGRRMAQRAAARPVIRVST 246 Query: 271 GYQGKFIHL---KKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCI 323 QG + + + QQV +++ + F+F P+PG F + NA +A G+ Sbjct: 247 TPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIANAALATGMAA 306 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379 +IGI+ + LE +EK+ VPGR E V RG VDYAH ++ +L+ +RT Sbjct: 307 SIGIEPQVFLEGVEKV-AVPGRMERV---DRGQDFVAVVDYAHKPAAIAAVLETLRTQLE 362 Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 ++GRI +V G GGDRD KRP+MG A AD+ +VTDDNPR+EDP IRA ++ G Sbjct: 363 GSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRAAVLAGAQE 422 Query: 437 --PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 P E G+R +AI + D ++V GKGHE ++ + Sbjct: 423 ANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLIGD 467 >gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 498 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 148/490 (30%), Positives = 254/490 (51%), Gaps = 52/490 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + + SDSR ++ +F+ I G D HL + +GA A+V + ++D + Sbjct: 26 EFDHIESDSRGLKERNLFICIKGTNFDSHLIARELQRKGAVALV--AEMPIEDEEVVV-- 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSF 145 PI+ V ++R +L Y HP L VTGT+GK+++ + + + LSSF Sbjct: 82 --PIVYVKSSRLVEALLTMEEYC-HPYRKLTTIGVTGTNGKTTITTLIYHV-----LSSF 133 Query: 146 Q-----IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + IG + + + + TTP P+ LAK L + + +E SSH L +R Sbjct: 134 ERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLLQLSTKLKSEYFIMEVSSHSLSMNR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G++ G +N+ RDH+D+H T Y+ +KM+LF LL A++ D ++ Sbjct: 194 VEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLFS-LLKTNGIAVVNGDKINIADI-- 250 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPG 308 H + R+ + G+ + + + + + IS G DF P L G Sbjct: 251 --HISRNRITTYGFGDE--------SDYRIENLDISRTGMDFTIQTPYGSSHRIYSRLIG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367 E YN A ++ D + + + VPGRFEFV ++ G + VD+AHT + Sbjct: 301 EHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVVDFAHTPD 360 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE +LK R +T GR+I+VFG GG D+GKRP+M +++ +D+ I+T D+P+ +DP + Sbjct: 361 ALEKLLKTARRLTPGRLILVFGAGGSADKGKRPLMSEVSSKYSDVVILTSDDPKLDDPAE 420 Query: 428 IRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I ++ G+ F + +R EAI A+ + N+QD++++AG+GHE I+ GEK++ Sbjct: 421 ILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAGRGHEDFQIL--GEKRIPF 478 Query: 485 -DCDIIREIL 493 D ++++IL Sbjct: 479 NDKQVVKDIL 488 >gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM 245] Length = 520 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 166/514 (32%), Positives = 246/514 (47%), Gaps = 59/514 (11%) Query: 14 LINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 ++ +L + M + ER I +++DSR + G +FVAI G DGH +I +A+ GA A Sbjct: 19 IVRELDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAA 78 Query: 71 IVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSS 128 ++ + A IR + + AS R++ ++ VTGT+GK++ Sbjct: 79 VICEALPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIF------LIGVTGTNGKTT 132 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVS 186 A + + G+ + IG T+ +D L TTP L + G Sbjct: 133 TARLIADMLNSCGIPAGYIG-TNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAV 191 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+ G++ FTNL +H+D+HQT Y +AK LF++L P E A+ Sbjct: 192 MEVSSHALVLDRVSGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDP-EGFAVF 250 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300 DD Y+ ++ R V +F C + ++++T+ G+ F Sbjct: 251 NIDDPYASQMASR----------VAADKRF-----CCTLKPQRELTLRC-GRSFSAAVSS 294 Query: 301 --------DFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + FP LPG + V N L AA + +GI V L K V Sbjct: 295 RTLGSASVELHFPDAVHTVQTELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVE 354 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPI 401 GR E + + +VDYAHT ++LE L + + S R++VVFGCGG+RD+ KRP Sbjct: 355 GRMERIWDTEKSRCAFVDYAHTPDALEKALSALGELKSSDARLVVVFGCGGNRDRLKRPE 414 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459 MG+IA + AD +T DNPR E+PE I EI G+ G + R EAIR A L Sbjct: 415 MGRIASEKADFVFLTSDNPRDENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPG 474 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D+L+VAGKGHET + G K D +I+RE L Sbjct: 475 DILLVAGKGHETYQEIA-GIKHFFSDQEILRECL 507 >gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dyadobacter fermentans DSM 18053] gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans DSM 18053] Length = 491 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 244/481 (50%), Gaps = 49/481 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G + DGH FI A GA AI+ ++ +R + + V Sbjct: 33 DSRKVLPGSLFVALRGTQVDGHQFITTAADLGAVAILC------EELPEHVREDITYIQV 86 Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +++ + A+ YG HP ++ VTGT+GK+SVA+F+ Q+ + G S G ST Sbjct: 87 EDSAAAMGHIAAAFYG-HPSKKVKLVGVTGTNGKTSVATFLFQLFRALGYRS---GLLST 142 Query: 153 ISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + +D + TTP + L L+ ++++ +HV +E SSH + QHR+ G+ G Sbjct: 143 VQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVSSHSVAQHRITGLHFAGGI 202 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK----RAHNAG 264 FTN+ DH+D+H+T Y AK F+ LPK + A++ DD +++ R Sbjct: 203 FTNITHDHLDFHKTFDNYIKAKKGFFDA-LPKSAFALVNIDDRRGTVMVQNTKARVETYS 261 Query: 265 CRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + L+ ++GK I + +H N Q+V F + G F YN L G Sbjct: 262 LQTLAT-FKGKIIS-DTLAGMHMDINSQEV-----------WFRVIGRFNAYNLLAVYGA 308 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G VL L L PGRFE F + G VDYAHT ++LE +L+ I + Sbjct: 309 AVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVG--IVDYAHTPDALENVLETITHLR 366 Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +G +++ V GCGG+RD KRP M +IA ++ I+T DNPR EDP I ++ G+P Sbjct: 367 NGNEQVVTVVGCGGNRDAEKRPKMAEIACRYSNRVILTSDNPRFEDPMDILDQMRKGVPP 426 Query: 439 FIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 K +R EAI A D++++AGKGHE V G K D +++ E+ Sbjct: 427 LDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKGHENYQDV-KGVKHHFDDKEVLMEVF 485 Query: 494 G 494 Sbjct: 486 A 486 >gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acidithiobacillus caldus ATCC 51756] gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Acidithiobacillus caldus ATCC 51756] Length = 478 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 152/476 (31%), Positives = 233/476 (48%), Gaps = 31/476 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + SDSR ++ G +FV + DG F+ QA+A GA A ++ +D T+ Sbjct: 21 RVCGIESDSRRVRPGQLFVGLHSRHGDGARFLAQALAAGAAAALLQGPELRRD---TV-D 76 Query: 89 NTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+ V + L R Y G+ P ++ VTGT+GKSSV + Q+ + + Sbjct: 77 GQPVWVHPEAPRLLGEALRRWYHWQGRAP-GLIGVTGTNGKSSVTWLIAQLAGAEVIGTL 135 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 GP + + A TTP+ + L L + +++E SSH L R+ G+ Sbjct: 136 GAGPLTALQPLAN----TTPAAVELWSLLGAARQRRAQWLAMEVSSHALALERVAGVPFT 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTNL RDH+D+H + AY AK +LF P A++ ADD +S E+ H Sbjct: 192 AAVFTNLSRDHLDFHGSMAAYGAAKAKLFTN--PALQLAVLNADDPFSAELRTHLH-PDV 248 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R++ G+ +++ + I PL G N L A + Sbjct: 249 RIVGYGFGAGDYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAALAAVEGL 308 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G+D + + L L + PGR++ + + + + VDYAHT ++L +L+++RT+ GRI Sbjct: 309 GMD--VDPQVLAALRLPPGRYQRLSPRTPQQPDVLVDYAHTPDALRQVLEDLRTVAKGRI 366 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 VVFGCGGDRD+GKRP MG +A LAD ++TDDNPRSEDP I AEI+ G+P Sbjct: 367 TVVFGCGGDRDRGKRPEMGAVAAALADRVLLTDDNPRSEDPAAIVAEILAGMP-----AG 421 Query: 445 RIEAIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R E + + D +++AGKGHE + G K+ D ++ L Sbjct: 422 RAEVCHDRAAAIARAIGEAEHGDWVLIAGKGHEQTQ-ESAGAKRPCDDVELATRAL 476 >gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147] Length = 501 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 160/489 (32%), Positives = 243/489 (49%), Gaps = 46/489 (9%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR IQ G +F+A G DG +I AI +GA + + Q + R P Sbjct: 28 ADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQ-WQPEWR--VPNQG 84 Query: 95 VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + + + + A++ YG + I+ VTGT+GK+S+ ++ Q + + + P+ Sbjct: 85 ISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQ-----AIDNLEQAPSCA 139 Query: 153 I-----SSF---AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 I + F Q TTP P+ + + QG +++E SSHGL Q+R++G+ Sbjct: 140 IIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYRVNGVPF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHN 262 FTNL RDH+DYH + Y AK RLF AII +DDA+ + + H+ Sbjct: 200 HTAVFTNLTRDHLDYHGSMAEYGAAKERLF--YWQGLQNAIINSDDAFGAALAAELKQHS 257 Query: 263 A-----GC---RVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGE 309 GC + + G+ + + C N++ ++IS+ EG L G Sbjct: 258 GSLKTEGCNEVKTYTYGFNEQ-ADICITCFAANREGMSISLATPWGEGSAQTRLL---GR 313 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F N A G A G D L L ++ GR + + + + VDYAHT ++L Sbjct: 314 FNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMDCIIQPDKP-LVVVDYAHTPDAL 372 Query: 370 EMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 E L +R I R+ VFGCGGDRD+GKRP+MG++A LAD A+VT DNPR+EDP+ Sbjct: 373 EKALTTLREIQQPESRLWCVFGCGGDRDRGKRPLMGEVAARLADKAVVTSDNPRTEDPQA 432 Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I A+I+ + P +E +R AI I QD++++AGKGHET V G K D Sbjct: 433 IIADILPAVPHPALVE-ADRKAAIEQTIAQAQAQDIVLIAGKGHETYQDV-QGVKHHFSD 490 Query: 486 CDIIREILG 494 ++ ++ LG Sbjct: 491 FEVAQDALG 499 >gi|187479354|ref|YP_787379.1| putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Bordetella avium 197N] gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bordetella avium 197N] Length = 939 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 152/451 (33%), Positives = 233/451 (51%), Gaps = 24/451 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F+A G + DG +I A+ GA ++ Y + ++ +++ +L V Sbjct: 33 DSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVL----YDSDALTQSVVADSRVLPV 88 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L A YG+ + +LAVTGT+GK+S ++ + R G IG T+ Sbjct: 89 AGLRGMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIG---TL 145 Query: 154 SSFAQDN-----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 D LTTP I L + ++ + G V++EASS GL+Q R+D ++LIA Sbjct: 146 GGLLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAG 205 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 +TNL RDH+DYH T + Y AK LF P A+I ADDA + ++ + Sbjct: 206 YTNLTRDHLDYHGTMEQYEAAKALLFN--WPGLQAAVINADDAAGRRLLAKLPVGLASAY 263 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 ++ + + + A + Q T++ + L G V N L+ AGL + +G Sbjct: 264 AIDHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGWP 323 Query: 329 SALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--- 383 A V + V GR + V +++G + VDYAHT ++LE L +R + R Sbjct: 324 LAAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVDYAHTPDALERALLALRPVAQARNGA 383 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFI 440 ++ +FGCGGDRD GKRP MG+IA +LAD IV+ DNPRSE P+ I +++ G+ Sbjct: 384 LVCLFGCGGDRDPGKRPEMGRIAGELADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLALR 443 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + +R AI AI +DV+++AGKGHET Sbjct: 444 AESDRALAILHAIWDSWPEDVVLLAGKGHET 474 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 99/393 (25%), Positives = 169/393 (43%), Gaps = 36/393 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R + A IFVAI G DGH ++ QA A A A+ + D S+ P Sbjct: 503 VSTDTRSVAADEIFVAISGENFDGHRYLAQAQAA--GACAAVVAHRVSD------SSLPQ 554 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LV+ TR L A+ + ++AVTG++GK++ + I L+++Q Sbjct: 555 LVLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAI-----LAAWQGEAHRL 609 Query: 153 ISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +S +N + P + + + + G+ H A + Q + L+ Sbjct: 610 ATSGNFNNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQAS---VALV----N 662 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N R+H ++ +A + LP++ A+ DD Y+ + A RVL Sbjct: 663 NAQREHQEFLHGVEAVARENGAVLSA-LPEDGVAVYPGDDVYTPIWDELA--GARRVLRF 719 Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G Q G ++ +K+ + + D + P+PGE + NAL A +A G Sbjct: 720 GLQPGLDVYAQKIRPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPL 779 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387 A + LE V GR + T++ G I +D + +N S+ + ++ + + R++V+ Sbjct: 780 ASAVRALEGFSAVKGRMQRKETSN--GTILIDDTYNANPDSVRVAIEVLAQLPGPRVLVL 837 Query: 388 FGCGGDRDQGKRPIM----GKIALDLADIAIVT 416 G D+G P M G A D A+VT Sbjct: 838 GDMGEVGDEG--PAMHREVGGYARDQGIDAMVT 868 >gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella halifaxensis HAW-EB4] gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis HAW-EB4] Length = 488 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 230/459 (50%), Gaps = 12/459 (2%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +E++ DSR +Q+G +FVAI G + DG FI A +GA A++V + + + Sbjct: 18 EFSELTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVLVHTDSPEEHGKLVHEA 77 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 IL R+ +S A++ Y + I+ VTGT+GK+SV + Q+ G + Sbjct: 78 GLQILFFQLNRQ-ISALAAQAYPLSQVRPQIIGVTGTNGKTSVTQLIAQLQLLQGKQTAV 136 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + D+ TT PI L K L +G ++E SSHGL Q R++ + Sbjct: 137 MGTLGNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEVSSHGLVQGRVEAVPFD 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T AY AK RLF+ +I DDA +E + + Sbjct: 197 VAVFTNLSRDHLDYHHTMDAYGAAKKRLFQ--FATLRAGLINCDDALGREWLTDLASDKV 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ K K C H+ T+ + PL G+F + N L A G Sbjct: 255 IGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPTGEAKLNSPLLGDFNLSNLLAALGALYL 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G D ++ EKL V GR E T + VDYAHT +++E LK +R G++ Sbjct: 315 LGEDMHALVALAEKLEPVAGRMERFTTKDEV-TLVVDYAHTPDAIEQALKALRVHCKGKL 373 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441 VFGCGGDRD+GKRP+M A AD +VT DN RSEDP I A+I+ G+ + Sbjct: 374 WCVFGCGGDRDRGKRPMMAASAEQFADRVMVTSDNSRSEDPNAIIADILAGLQHPKNALT 433 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + +R AI+ + D++++AGKGHET + NGE+ Sbjct: 434 QVDRQTAIKDVVAQAVAGDMVLLAGKGHETYQEI-NGER 471 >gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 460 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 236/463 (50%), Gaps = 53/463 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ V DSR I+ G +F+ I G DGH F +A+ GA A+VV + Sbjct: 22 EVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAVALVVERRLDV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P ++V TR ++LFA+ YG H I+ VTGT+GK++ ++QI + G + Sbjct: 73 NVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTYLIEQILRDQGFITGL 132 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G I S TT + + K L+ + + + +E SSH LD R+ GI Sbjct: 133 MGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVSSHALDFGRVKGIPFR 192 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMK 258 +G FTNL +DH+DYH+T Y AK +LF + + S AI+ DD S E + Sbjct: 193 SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQRSYAILNVDDEAS-ETFQ 251 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGE 309 R +A V++ G ++K C + + I+ EG +F + L G+ Sbjct: 252 RLTSA--EVITYG-------IEKECDVR-ASNIRITAEGTEFTLTTFEGTENIRMKLVGK 301 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYNAL A +A GI + + L ++ VPGR E V + + + VDYAHT + L Sbjct: 302 FNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV-SEGQDYLVLVDYAHTPDGL 360 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L ++ G + VFGCGGDRD+ KRP+MGK+ +D VT DNPR+EDP I Sbjct: 361 ENTLSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYSDHLFVTSDNPRTEDPAAIL 420 Query: 430 AEIIHGIPGFIEKG---NRIE-------AIRTAIEMLNKQDVL 462 +I +PG +E G +R E AI+ AIE+ + +DV+ Sbjct: 421 EDI---VPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460 >gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sanguinis PC909] Length = 485 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 241/468 (51%), Gaps = 29/468 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + ++ ++I + DSR + G +F AI G DGH +I A+ GA A+V Sbjct: 8 MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 67 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + + V NT+K L++ +S+ YG+ +N ++ V GT+GK+++ Sbjct: 68 ES---------LNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 118 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVE 188 +Q + + G+ S IG + + TTP L+ L+ L +GV H V +E Sbjct: 119 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTP----LSPDLNELLQEGVRHNLPYVVME 174 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246 SSHG+ ++R+D + FTN+ +H+DYH+T + Y KMR F + + AII Sbjct: 175 VSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD ++ + ++ ++L+ G Q K I K + + ++ V+G+ Sbjct: 235 NCDDEHASSFISVTNS---KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTI 291 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G++ VYN L ++G ++ +E + V+ GRFE++ S G + +DYAH Sbjct: 292 PLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS-GVTVVIDYAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +++ +L + I++G II V G GG+RD+ KR IMG+ A L+D T DNPR+ED Sbjct: 351 NPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNED 410 Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 P I +++ G + +R +AI A++ D +V+ GKGHE Sbjct: 411 PLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHE 458 >gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T] Length = 498 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 231/456 (50%), Gaps = 23/456 (5%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 +++++DSR G +F A G + DG F+ A+ GA A++ F A + Sbjct: 18 DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDG---DGFCAPALA-V 73 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P V R+ A L+G+ +++ VTGT+GK++V+ + + G +G Sbjct: 74 PGFGVRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVG 133 Query: 149 PTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 A + L TTP + L + + +QG ++E SS GLDQ R++G + Sbjct: 134 TLGCGFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH T +AY AK RLFE P+ S +I DD + + +R G V Sbjct: 194 IFTNLSRDHLDYHGTMEAYAAAKARLFER--PELSACVINIDDPWGLALARRLVVEGRAV 251 Query: 268 LSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++ + + ++ A + T+ EG++ + + F V N + Sbjct: 252 IACTLYAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAV 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377 AG +A GI + L +L GR + VG + +DYAH+ ++L +L+ +R Sbjct: 312 AGALLARGIAFDELPPVLGRLAPPQGRMQLVGGVCEP-LVVIDYAHSPDALAKVLEALRG 370 Query: 378 TITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 T+ S GR++ VFGCGGDRD GKRP+MG+IA +AD ++T DNPRSEDP++I I G Sbjct: 371 TVHSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAG 430 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E +R +AI A+ DV+++AGKGHE Sbjct: 431 AGAAAECVVDRAQAITRAVGEARADDVVLIAGKGHE 466 >gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardioides sp. JS614] Length = 504 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 246/478 (51%), Gaps = 30/478 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +S S+ I+ G ++ A+ G++ G F A+A GA A+ A + + + Sbjct: 35 EVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRGPA----- 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 P LVVD R L ++R+YG+ ++ V T + + ++ Q++G+ + Sbjct: 90 GAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAAV 149 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T I+ + LTTP L + + + V ++E SSH L R+DG+ Sbjct: 150 VGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVFD 209 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264 F NLGRDH+D+H+ + Y+ AK LF P+ + A++ DDA+ + + + A Sbjct: 210 VAVFLNLGRDHLDFHRDLEDYYAAKASLF---TPERARFALVNVDDAHGRRLAEEA-TVP 265 Query: 265 CRVLSVG---------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 R S+G ++ + L+ + V ++ +G+ LPG+F V N Sbjct: 266 VRTFSMGRGDDAQRADWRAVDVRLRAT----GSEFVVVAPDGRRIPAGCALPGDFNVANT 321 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+D A+V + VPGR E V + + VDYAH +++E ++ Sbjct: 322 LAAVAAAAEAGLDPAVVAAGIAAAGGVPGRLERVDAG-QDFLVVVDYAHKPDAVEAAIRT 380 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +T GR+IVV G GGDRD GKRPIM IA LAD+ +VTDDNPR+EDP IRA ++ G Sbjct: 381 LRPLTEGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAG 440 Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + IE G R AIR A+ D++++AGKGHET V +G D +++RE Sbjct: 441 VVTGQAIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEV-DGVVHPFDDREVVRE 497 >gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Turicibacter sp. HGF1] Length = 483 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 241/468 (51%), Gaps = 29/468 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +++L + ++ ++I + DSR + G +F AI G DGH +I A+ GA A+V Sbjct: 6 MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 65 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132 + + V NT+K L++ +S+ YG+ +N ++ V GT+GK+++ Sbjct: 66 ES---------LNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 116 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVE 188 +Q + + G+ S IG + + TTP L+ L+ L +GV H V +E Sbjct: 117 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTP----LSPDLNELLQEGVRHNLPYVVME 172 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246 SSHG+ ++R+D + FTN+ +H+DYH+T + Y KMR F + + AII Sbjct: 173 VSSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAII 232 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD ++ + ++ ++L+ G Q K I K + + ++ V+G+ Sbjct: 233 NCDDEHASSFISVTNS---KILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTI 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G++ VYN L ++G ++ +E + V+ GRFE++ S G + +DYAH Sbjct: 290 PLFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPS-GVTVVIDYAH 348 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +++ +L + I++G II V G GG+RD+ KR IMG+ A L+D T DNPR+ED Sbjct: 349 NPDAIFQVLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNED 408 Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 P I +++ G + +R +AI A++ D +V+ GKGHE Sbjct: 409 PLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHE 456 >gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 502 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 152/463 (32%), Positives = 231/463 (49%), Gaps = 31/463 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR I+ G +FV + G DGH +I AI GA AI+ + Sbjct: 22 EITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNGAVAIMAEKEL------PELPG 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N + V +TR+ L + A+ +G E + + +TGT+GK++ V ++ S + Sbjct: 76 NITRITVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTTTHMVDKVLNDSNRKTGI 135 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + TTP I L + + + G T+ +E SSHGLD R+ G Sbjct: 136 IGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLEVSSHGLDMGRVRGCDFQ 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESPAIIYADDAYSKEVMKRAH 261 FTNL DH+D+HQ ++Y N K LF +L + ++ ADDA S KR Sbjct: 196 TVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKVVLNADDAASSYYGKRT- 254 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++++ G V A+H + + + DF + G VYNAL Sbjct: 255 --SAQIVTYGIHNP----ADVRALHIQNTGDGCRFIVETPWGSSDFTMKVYGVHNVYNAL 308 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A C+ GI + L+ V GRF+ + T+ R R+ VDYAH + L+ L + Sbjct: 309 AAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKTD-RSFRVVVDYAHNPDGLKATLLSA 367 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + ITSG++I V GC G+RD+ KRPIM IA +D + T DNP SEDPE+I AE++ G+ Sbjct: 368 KEITSGKMICVMGCRGERDRLKRPIMADIAASYSDYVLFTTDNPFSEDPEQIIAEMLGGL 427 Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 + NR +AI+ A+EM QD +++ G+GHET ++ Sbjct: 428 SSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITGRGHETRYV 470 >gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024] Length = 499 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 240/475 (50%), Gaps = 55/475 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 QW ++ S DSR + +G IF+A+ E F A+A GA AI+ S L Sbjct: 16 QWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKTRAFAESALANGALAII--SETELGV 73 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFV--- 133 + +RS+ R+ + + R Y +H P I+AVTGT+GK++++ V Sbjct: 74 ANEWVRSDV--------RQRMGEWQER-YLQHIDPVVPVRIIAVTGTNGKTTISRLVAEL 124 Query: 134 ----QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 QQ C G + I P T S+ TT + L AL + QG T S+EA Sbjct: 125 ISSQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEA 178 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL+Q RL+G + ++NL RDH+DYH T +AY AK LF A+I D Sbjct: 179 SSHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAVINLD 236 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---- 305 D ++ ++ A + + Y L + A + ++ S+ G F+ + P Sbjct: 237 DEHAALMINAAKQNPAQPKILTYS-----LTQNTADYYITDLSYSLAGATFNLVSPQGSF 291 Query: 306 -----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G F V N + A G + ++ + +L PGR + + G R++V Sbjct: 292 AVQSPLLGHFNVENLVAALIATEQAGFNLKALVAFVPELIGAPGRMQVI---RDGERLFV 348 Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 DYAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DN Sbjct: 349 VDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDN 408 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 PR+EDPE+I A++ GI + + I R AI+ + +Q D++V+AGKGHE Sbjct: 409 PRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463 >gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Heliobacterium modesticaldum Ice1] Length = 544 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 162/497 (32%), Positives = 231/497 (46%), Gaps = 82/497 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ ++ DSR +Q G++F + G K DGH F A+ +GA A+VV + Sbjct: 56 QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVERYVDVDALQ---- 111 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSF 145 + V +TRK ++ A YG +L V T + V+ I G Sbjct: 112 -----IRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVG 166 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + A + TTP + L L+ ++ +G V +E SSH LDQ R+ G+ Sbjct: 167 LIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVLGVDF 226 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----------PKESP---------- 243 FTNL +DH+DYH+T + Y +AK LF L P +P Sbjct: 227 DLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPK 286 Query: 244 -AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300 AII ADD NAG FI I + ++G+D+ Sbjct: 287 RAIINADDP----------NAGF----------FIAASAAPVITYGIEADAMIKGRDWAV 326 Query: 301 -------DFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 D L+P L G F + NAL A A+GID + L + V G Sbjct: 327 TPHGLTCDVLYPGGEVRLNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAG 386 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 RFE + + + VDYAHT + LE +L R + GR+I VFGCGGDRD+ KRP MG Sbjct: 387 RFERIDLG-QPFSVIVDYAHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGA 445 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNK 458 + L+D+AIVT DNPR+EDP +I +I +PG + G +R AI A+ + Sbjct: 446 VVARLSDVAIVTSDNPRTEDPRRIIEDI---LPGLADAGDVHVEPDRSSAIALALSLAQP 502 Query: 459 QDVLVVAGKGHETVHIV 475 D++++AGKGHE+ IV Sbjct: 503 GDLVMIAGKGHESYQIV 519 >gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Acinetobacter calcoaceticus PHEA-2] Length = 499 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 155/474 (32%), Positives = 237/474 (50%), Gaps = 53/474 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 +W ++ S DSR + +G IF+A+ E F A+A GA A++ + + + Sbjct: 16 KWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKTRAFAESALANGALAVISETELGVAN 75 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVA------- 130 V + R+ + + R + P I+AVTGT+GK++++ Sbjct: 76 E----------WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLVAELI 125 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 SF QQ C G + I P T S+ TT + L AL + QG T S+EAS Sbjct: 126 SFQQQRCAVMGTTGNGILPDLTPSTH------TTLDALQLQNALHDYAKQGATFASLEAS 179 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL+Q RL+G + ++NL RDH+DYH T +AY AK LF AII DD Sbjct: 180 SHGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFR--FSSLKVAIINLDD 237 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----- 305 ++ ++ A + + Y L + A + ++ S+ G F+ + P Sbjct: 238 EHAALMINAAKQNPAQPKILTYS-----LTQNTADYYITDLSYSLVGATFNLVSPQGSFA 292 Query: 306 ----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360 L G F V N + A G D ++ + +L PGR + + G R++V Sbjct: 293 VQSPLLGHFNVENLVAALIATEQAGFDLKALVAFVPELIGAPGRMQVI---RDGERLFVV 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++L +LK ++ S ++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNP Sbjct: 350 DYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNP 409 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 R+EDPE+I A++ GI + + I R AI+ + +Q D++V+AGKGHE Sbjct: 410 RTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHE 463 >gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Planococcus donghaensis MPA1U2] Length = 486 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 237/464 (51%), Gaps = 36/464 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR I+A F+ I G DGH F QA QGA I+ ++ N Sbjct: 23 IEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQGATLIITEKPMTI--------DN 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVA----SFVQQICQRSGL 142 ++ V++T + L L A++ Y +P +L VTGT+GK+SVA S + ++ ++S L Sbjct: 75 ATVVEVESTSRTLGLLAAKFY-DYPSKLLHMIGVTGTNGKTSVAGILHSMLMELGEKSAL 133 Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + F + S+ ++ LTT I A+ + +H+++E SSHGL RL Sbjct: 134 TGTIGFNLNGQLHPSANTTNDVLTTQQMIARAR------DEDCSHMTMEVSSHGLVLGRL 187 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G++ FTNL DH+D+H T + Y +AK LF +L L + AI+ ADD +SKE+ Sbjct: 188 AGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAILNADDPWSKEL 247 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K + V + G Q K + +H T++ +F L GEF V NA Sbjct: 248 AKMTPHP---VYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLLGEFNVSNA 304 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L + A G +L+ L K+ V GR + V + I++DYAHT +++E + Sbjct: 305 LASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAP-ISIFIDYAHTPDAIEKAIDA 363 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ RII + G GG+RD+ KRPIM A +AD ++T D+PR E + I ++ G Sbjct: 364 VQDFKKSRIIFLVGTGGNRDKTKRPIMAAKA-SIADYVVLTTDDPRDEAYDSILGDLEVG 422 Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + F G+R +A+ A+E D++++AGKGHE I+ N Sbjct: 423 MTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKGHEDYQIIGN 466 >gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase; AltName: Full=D-lysine-adding enzyme; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga maritima MSB8] Length = 490 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 242/483 (50%), Gaps = 45/483 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+ S ++ G +F+ G K D H IP+ + +GA A+VV L DF Sbjct: 24 EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEREIDL-DF------ 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V ++R F + AS + +++L T + + + L Sbjct: 77 --PYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSV 134 Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 T+ + +S+ D +TTP I + A+ G ++E SSH L Q R++G++ Sbjct: 135 LTTAVKRILGNSYYDD--ITTPDAITILSAMKENREGGGKFFALEVSSHALVQQRVEGVR 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN+ RDH+D+H T + Y AK+ LF+ LL + A++ E + A N Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGVAVL-------NESLADAFNR 244 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 R ++ G A + + +S EG F P G+F YN Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVSWEGTQFVLETPDGLLKVFTRAIGDFNAYN 296 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373 A A +G D + LE V GRFE V G G + VD+AH+ ++LE +L Sbjct: 297 AAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T D+PR EDPE+I ++I Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLI 416 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GI ++ +R EAI TA+ + N+ D +V+AG+GHE I+ +K D +++ Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVE 476 Query: 491 EIL 493 EI+ Sbjct: 477 EII 479 >gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Proteus mirabilis HI4320] gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Proteus mirabilis ATCC 29906] Length = 495 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 159/501 (31%), Positives = 245/501 (48%), Gaps = 26/501 (5%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P L + L +Q + +++ DSR +G +FVAI G++ DG +IPQAIAQG A+ Sbjct: 4 PNLSDLLGALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 + + P++ ++N LS A Y P N L + G +G + + Sbjct: 64 LAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFY-HQPANKLKLIGVTGTNGKTT 122 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVT 183 Q + Q + +G S + + L TT S + + L L +QG T Sbjct: 123 TTQLLAQWAQ----GLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGAT 178 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 ++E SSHGL Q R+ + +A FTNL RDH+DYH Y AK LF E Sbjct: 179 FTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEK- 237 Query: 244 AIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 II ADDA + + +A L +QG+++ ++ + + + Sbjct: 238 -IINADDAVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGE 296 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + PL G F V N L A +A+ V++ L V GR E ++R + Sbjct: 297 GEIESPLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRP-TVI 355 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L+ R +G++ +FGCGGDRD+GKRP+MG +A AD ++TDDN Sbjct: 356 VDYAHTPDALEKALQAARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFADKVVITDDN 415 Query: 420 PRSEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 PRSE+P+ I +I+ G+ PG + R EA+ + + D+++VAGKGHE IV Sbjct: 416 PRSEEPQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKGHEDYQIV- 474 Query: 477 NGEKKMSV-DCDIIREILGLI 496 G +++ D + +LG+I Sbjct: 475 -GTRRLDYSDRLTVARLLGVI 494 >gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola CNS-205] Length = 515 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 233/465 (50%), Gaps = 42/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V+ S+ ++ G ++ A+ G + G F+P A GA A++ A + SAT Sbjct: 39 EPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVPAAARAGAVAVLTDPAGA----SATA 94 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ P+LVV + R L AS +YG ++ VTGT+GK+S A V+ + +G + Sbjct: 95 QAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTAGKTSTAYLVESGLRAAGHVT 154 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T + A D+ TTP L L+ +GVT V +E SSH L R+ G++ Sbjct: 155 GLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVR 214 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAI--IY--ADDAYSK 254 G +TN G DH+D+H YF AK +LF+ E+L + PA+ +Y A YS Sbjct: 215 FTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDGRCEVEVLNHDDPALRPLYRQATVTYSA 274 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + A V GY +F +H + + LPG V N Sbjct: 275 AGDRSATWWADAVGGEGYAQRFT-------LHGPDGLALPAG-------VALPGRHNVAN 320 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMI 372 AL+A + +A G+D+ + VPGR E V RG VDYAH ++++ Sbjct: 321 ALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVRAPGPVRG---VVDYAHKTDAIVAA 377 Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L +R +GR +I + G GGDRD+GKRP+MG A + AD+ +VTDDNPR+E+P +IRAE Sbjct: 378 LAALREFGAGRRLICLLGAGGDRDRGKRPLMGIAAAEGADVVVVTDDNPRTEEPAEIRAE 437 Query: 432 IIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ G +E R AI A+ + DV+ + GKGHE Sbjct: 438 VLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLGKGHE 482 >gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9312] Length = 511 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/492 (27%), Positives = 246/492 (50%), Gaps = 37/492 (7%) Query: 13 ELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L++ + I P + + +IN +S +S+ +Q G +F+ + G DG + +AI GAEA Sbjct: 8 KLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAEAA 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129 ++ SA ++ +I +++ DN + + + + + VTGT+GK+++ Sbjct: 68 IIGSAA--KEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ + ++ G + G + F++ TT L K L+ +E Sbjct: 126 TFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILE 185 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAII 246 SSH + Q+R+ G + A FTNL +DH+DYH ++YF K +LF L K+ ++ Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVL 245 Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTI 293 DD + S ++ KR+ ++ ++ KF + C H ++ Sbjct: 246 NHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPRE--- 302 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 PL GEF + NA+ A + + + + ++ PGR E + ++ Sbjct: 303 -----KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDN 357 Query: 354 RG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + VDYAHT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA + Sbjct: 358 NDVSRSLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEE 417 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +D +T DNPRSE+P+KI +I+ GI + +R +AI +I+ K+D++++A Sbjct: 418 FSDQLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIA 477 Query: 466 GKGHETVHIVTN 477 GKGHE I+ + Sbjct: 478 GKGHEDYQILND 489 >gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 522 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/460 (33%), Positives = 230/460 (50%), Gaps = 25/460 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFS 83 R + + ++H++ G +F A+ G + G F A+ GA A++ A L D Sbjct: 25 RPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHP 84 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 +LV D+ R L A+++YG+ + IL VTGTSGK++ ++ +G Sbjct: 85 EVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAG 144 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ +G T I+ D+ TTP L L+ + GVTHV +E SSH L R+ Sbjct: 145 FTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVS 204 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G + G FTNL +DH+D+H+ YF AK LF+ E ++ D + ++++K Sbjct: 205 GTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK-- 259 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319 G +S + +Q+ T G LPG F + NAL+A Sbjct: 260 --PGTITVSTTGDASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAI 317 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ A + + + L ++ V PGR E V + VDY+H ++ +L R Sbjct: 318 GILHAAEVPTWAIERGLAEVDV-PGRMERVALGQDFTAV-VDYSHKPGAVSAVLDAARAQ 375 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---I 436 GR+IVV GCGGDRD KRP+MG+ A + + IVTDDNPRSEDP IRA ++ G + Sbjct: 376 AEGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAV 435 Query: 437 PG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P IE+G+R EAI A+ + D++VVAGKGHET Sbjct: 436 PAAERGEVIERGDRREAIAEAVARASSGDIVVVAGKGHET 475 >gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanothece sp. PCC 7424] gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424] Length = 496 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 178/333 (53%), Gaps = 19/333 (5%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP L + L+ G + +E SSH L Q R+ G FTNL +DH+D+H+ Sbjct: 159 TTPFATELQEQLAQAVKAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKD 218 Query: 223 QQAYFNAKMRLFEELLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 + YFNAK LF SP AII DD Y + ++ SV Sbjct: 219 MEDYFNAKALLF-------SPDYLTGRAIINLDDPYGQRLINSLSGEKVWSYSVNNPDAN 271 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + K + N + + +F PL G++ + N L A G + +G+D ++E L Sbjct: 272 FYTKDLTYEANGVSGILHTPIGEVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESL 331 Query: 337 EKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 VPGR E V + + + VDYAHT +SLE +LK R G++I VFGCGGDRD Sbjct: 332 PLFSAVPGRMERVKISDKQDISVIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRD 391 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTA 452 + KRP MGKIA +LAD+A+VT DNPR+E+PE+I +I+ GIP ++ +R EAIRTA Sbjct: 392 RTKRPKMGKIAAELADLAVVTSDNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTA 451 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I D +++AGKGHE I+ G +K+ D Sbjct: 452 IMDAKPGDGVLIAGKGHEDYQIL--GTEKIHFD 482 >gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylophilales bacterium HTCC2181] Length = 477 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/446 (30%), Positives = 232/446 (52%), Gaps = 15/446 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++ +S+ ++ G IF+AIVG + DG +I +AI A A++ SA ++S N P Sbjct: 14 DLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESA----NYSKNKAWNVP 69 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++N + ++ A L+ ++P ++ VTGT+GK+SV ++QQ S+ IG Sbjct: 70 SFGIENLNQKIAEIA-ELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIG 128 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + TTP I L + L+ +G+ + ++E SSH + Q+R+ I Sbjct: 129 TLGSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCR 266 TN+ RDH+DYH+T Y K + F + K I+ DD +E++ Sbjct: 189 LTNVTRDHLDYHKTLANYQKIKKQFFSDGECKN--FILNIDDCIGQELLMEVDWSEKNLT 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ Q I + + K + + K ++ + G VYN L G + Sbjct: 247 TYAIDVQADLIA-QNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQ 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRII 385 +++ +E L +PGR E + + G R+ +DYAHT ++L+ +L+++R I+ II Sbjct: 306 FSIDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDALKNVLQSLRAISDNEII 365 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGN 444 ++FGCGG+RD+GKR M +A + AD IVT DNPR EDP +I +I I + + Sbjct: 366 LLFGCGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHVVIES 425 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470 R +AI+ AI M+ + +L++AGKGHE Sbjct: 426 REQAIKKAIGMMEENSILLIAGKGHE 451 >gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas tunicata D2] Length = 489 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 242/472 (51%), Gaps = 27/472 (5%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 L+ F + + + DSR I+ G F+AI G+ +DG LF+ A+A GA +V Sbjct: 9 LARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIALVD--- 65 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135 + T S+ I V +K L+ +++ YGK E + + VTGT+GKS++ S + Sbjct: 66 --EQCECTFASDKIIRVAQLDKK-LAQLSAQFYGKPSEELALIGVTGTNGKSTITSMIAY 122 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + Q G S IG + ++L TTPS + L L L V++E S Sbjct: 123 LAQVCGSKSAVIGTLG----WGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEVS 178 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHGL Q R+ + A F+NL RDH+DYH Q+Y +AK+ LF E P+ S +I DD Sbjct: 179 SHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEIS--VINQDD 236 Query: 251 AYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 +K + + V G + G+++ V + + + PL Sbjct: 237 EVAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKCPL 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+F +YN A +A+G L+ + + KL V GR + ++ + VDYAHT Sbjct: 297 YGQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTCV-VDYAHTP 355 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L + L+ ++ G++ VFGCGG+RD+GKR +M + A A+ IVT DNPR+EDP+ Sbjct: 356 DALALALQALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFANKIIVTSDNPRNEDPK 415 Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I A+I+ G + + +R +AI+ AIE ++V+++AGKGHE ++ Sbjct: 416 AIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKGHEDYQLI 467 >gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium abscessus ATCC 19977] gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium abscessus] Length = 515 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 232/458 (50%), Gaps = 24/458 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ ++ + G +F A+ G G F +A++ GA A++ +A + + A + Sbjct: 37 VGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSAGAAAVLTDAAGA--ELVAGQGLD 94 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQI 147 +LV R L A+ +YG+ ++ V T + V+ + +G I Sbjct: 95 IAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGKTTTTYLVEAGLRAAGKRVGLI 154 Query: 148 GPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G T + +D + LTTP L + L+ + +GV V +E SSH L +R+DG + Sbjct: 155 G-TVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTVVMEVSSHALALNRVDGTRFA 213 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAG 264 G+FTNL RDH+D+H Q YF K RLF P+ + +++ DD + + + A AG Sbjct: 214 VGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCIDDDAGRAMAELAREAG 273 Query: 265 CRVLSVGYQGKFI---HLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 V +V + V H+ Q+ + +D + LPG + V N LVA Sbjct: 274 PDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTIALPGHYNVANCLVAIA 333 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIR 377 + +G+ +A + V PGR E V G+ + VDYAH +L +L+++R Sbjct: 334 ILDVLGVSAATAAPGIATAGV-PGRMEAVAA----GQPFLAVVDYAHKPGALRAVLESLR 388 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + GR+ VVFG GG+RD+GKR MGK+A +LAD+ +VTDDNPR+E+P IR EII G Sbjct: 389 SHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEEPAAIRTEIISGTT 448 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G IE G+R AI A D ++VAGKGHE+ Sbjct: 449 GSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGKGHES 486 >gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Koribacter versatilis Ellin345] Length = 509 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 250/496 (50%), Gaps = 50/496 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 DF +LI+ I I+ V DSR ++ G+ F+A+ G+ DG+ +I +AI GA Sbjct: 2 DFFQLIDGAEILSCSGNA-GIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAV 60 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 AIV SA + R + + R+ LS ++ Y KHP LA+TG +G + Sbjct: 61 AIVTDSATEIP------RPGVAWAICAHGRRALSRLSANFY-KHPAEKLAITGVTGTNGK 113 Query: 130 AS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182 + + + + +G + IG T+ D + TTP P+ L + ++G Sbjct: 114 TTTTYILDSLLRHAGRKTAMIG---TVEYHIADRVIPAPHTTPEPLELNQIFREALNEGA 170 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 T +E SSH L Q R+ GI FTNL RDH+D+H T ++YF +K LF+ E Sbjct: 171 TEAVMEVSSHALAQERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGC-GTEP 229 Query: 243 P--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 P II DD ++++ MK A+ +V + G+ H + ++ G F Sbjct: 230 PRVGIINRDDEWAEKFMKVANKHCDKVYTYGFAAGDFH---------AENAEMTSTGTRF 280 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE---HLEKL-----HVV--PGRFEFVG 350 D + P G +++ L+ + + +A +E HL+ L H+V PGRFE V Sbjct: 281 DLVTP-EGRVPIFSPLIGKVNVLNLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERV- 338 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGKIA 406 + + + VDYAHT ++L + K R GR+I +FGCGGDRD+ KRP+MGK A Sbjct: 339 SAGQPFTVIVDYAHTDDALRNVTKLARDFVQQAGGGRVITLFGCGGDRDKTKRPLMGKAA 398 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 + +D+ ++T DNPRSEDP+ I +++ G+ FI + +R +AI A+ DV+ Sbjct: 399 GEGSDLVVLTSDNPRSEDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVV 458 Query: 463 VVAGKGHETVHIVTNG 478 ++AGKGHE G Sbjct: 459 ILAGKGHEKTQTTREG 474 >gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 503 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 149/461 (32%), Positives = 239/461 (51%), Gaps = 20/461 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S DSRHI G +F + G K DG +F +A+A GA A V+ + +D + + Sbjct: 25 IDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAVAAVIGEEAAQKDPPSN--ED 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +V D ++ AS ++ K P +++ VTGT+GK++ ++ +C++SG++S Sbjct: 83 MVFVVSDPVAHWMGEMAS-VFWKRPSSQIDLIGVTGTNGKTTTTYLIEHLCKQSGITSAL 141 Query: 147 IGPTSTISSFAQDNRL---TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + + + + + + TT L L+ + G +E SSH LDQ R+ G Sbjct: 142 FG--TLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGVMEISSHALDQRRVAGCS 199 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAY----SKEVM 257 FTNL +DH+DYH++ +AYF +K LF+ L KES +++ DD + SK++ Sbjct: 200 FSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCSVVNIDDPWGLRLSKQLN 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 K A + + L + + + + F+ L G F + N L Sbjct: 260 KSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQGPFVSSLIGRFNLMNMLE 319 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G+ I G+ +L ++ VPGR E + + VDYAHT + L+ L +R Sbjct: 320 AVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKVEGDLPVVLVDYAHTPDGLKNALIALR 379 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + SGR+ VFGCGGDRD+ KRP+MG IA AD +T DNPR+EDP++I +++ GI Sbjct: 380 SFGSGRLFCVFGCGGDRDRSKRPLMGAIASKFADHVTLTSDNPRTEDPQQILNDVLPGIA 439 Query: 438 GFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E + +R AI+ AI D++++AGKGHE I+ Sbjct: 440 TETELIIEIDRANAIQMAIMKALPGDIVLIAGKGHENYQIL 480 >gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. syringae FF5] Length = 435 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 144/406 (35%), Positives = 206/406 (50%), Gaps = 22/406 (5%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ P++ V LS A R YG N++ VTGT+GK+SV V Q G Sbjct: 20 TDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCG 79 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G T Q R TTP PI + L+ L G V++E SSHGLDQ R + Sbjct: 80 IVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSHGLDQGRAAALAF 139 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TNL RDH+DYH T +AY AK +LF P +I DD + +E+ + Sbjct: 140 DVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDLKCRVINLDDDFGRELAAVKQESR 197 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S +++ + + + T ++ +G+ F L G F + N L A G + Sbjct: 198 LITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGALL 256 Query: 324 AIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G+D AL +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R Sbjct: 257 --GLDYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAK 313 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I PGF+ Sbjct: 314 GRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVA 370 Query: 442 KG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 371 ADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQ 415 >gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of Datisca glomerata] gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of Datisca glomerata] Length = 571 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 147/425 (34%), Positives = 222/425 (52%), Gaps = 39/425 (9%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+LV + R L A+R+YG +L VTGT+GK++VA ++ + +G ++ IG Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T ++ + TTP L L+ ++ +GVT ++E SSH + HR+ GI+ Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTNL +DH+D+H + + YF AK LF + ++I D + +++ A Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTP--ERTGVSVIDTDTPWGRQLAAAVPGA---- 325 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G H + V T + G D LPG F V NALVA L +A Sbjct: 326 ITCGTAAD-AHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVA 384 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITS 381 G+ + + L L VPGR E V G+ + VDYAHT ++++ +L+ +R + S Sbjct: 385 TGVPAPVAAAGLASLPGVPGRMERVDA----GQPFLGLVDYAHTPDAVQTLLRTVRPLVS 440 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-- 439 GR+IVV GCGGDRD+ KRP+MG A AD+AI T DNPRSEDPE I A++ G+ Sbjct: 441 GRVIVVLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTLPP 500 Query: 440 ------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-----DCDI 488 + + +R AIR A+ D +V+AGKGHET G+++ V D D+ Sbjct: 501 SARGRVMVEPDRAAAIRRAVGFARPGDAVVLAGKGHET------GQEQAGVVTPFDDRDV 554 Query: 489 IREIL 493 +R L Sbjct: 555 LRAEL 559 >gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea] gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Shewanella violacea DSS12] Length = 492 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 236/466 (50%), Gaps = 27/466 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 N +S DSR I G +F+A+ G+ DG FI A QGA A +V + L + Sbjct: 17 ESFNGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAVAALVHTDEPTEHGQVLSE 76 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139 SA+++ ++ + LS ++ Y P+ ++ VTGT+GK+S+ + Q+ Sbjct: 77 ASASLQ-----ILFFQLNQELSAIGAQAYPLAPQRLKLIGVTGTNGKTSITQLMAQLVAL 131 Query: 140 SGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +G + ++ TT PI +A L G ++E SSHGL Q+R Sbjct: 132 QGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADLCAMEVSSHGLIQNR 191 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM- 257 + + FTNL RDH+DYH T QAY +AK RLF+ ++I DD ++ + Sbjct: 192 VAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFK--FSSLQSSLINLDDEVGRQWLS 249 Query: 258 --KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVY 313 + A + G + S I+ + +H++ + + V EG+ PL G F + Sbjct: 250 EEQEAKHLGFSICSAHADAASIYTQD-NHLHHQGVMAMLVWPEGRA-KLASPLLGSFNLS 307 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N + A G IG D ++ + L V GR E T + G I VDYAH+ +++E L Sbjct: 308 NLVAALGALYLIGYDMQALVASVPLLTPVAGRMERF-TTANGVTIVVDYAHSPDAIEQAL 366 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K +R G++ +FGCGGDRD+GKRP+M + A AD ++T DN RSE PE I +I+ Sbjct: 367 KALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKVMITSDNVRSESPEAIIEDIL 426 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 G+ + + NR +AIR + + D++++AGKGHET V Sbjct: 427 VGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKGHETYQEVA 472 >gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Marinithermus hydrothermalis DSM 14884] Length = 482 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 151/486 (31%), Positives = 238/486 (48%), Gaps = 45/486 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR +Q G+++VA+ G + DGH FIP A+ +GA AIV + Sbjct: 23 VKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDAVQRGAVAIVGEE---------PLEPG 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + R+ LS A+ YG P ++ VTGT GK++ + V + R+G + Sbjct: 74 VPYLRVPDARRALSRLAAAFYG-FPSTRLFVIGVTGTDGKTTTSCLVHHLLTRTGRGA-- 130 Query: 147 IGPTSTIS-SFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G ST+ + ++ RL TTP + AL+ + +G+TH +E SSH L QHR+ Sbjct: 131 -GLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGLTHAVLETSSHALAQHRVA 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +TNL +H+D+H + +AYF AK L + +I+ A Y+ + R Sbjct: 190 DVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVN----RAGFSILNAGCPYAMRLTHRP 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 H + G Q +V + + T+ G + P+ G + V NAL A Sbjct: 246 HT------TYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGEAFLPMIGRYNVENALAALA 299 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 G+ L L + VPGR + + + R VD+AHT +L L +R T Sbjct: 300 AAHRAGVPLEEALPALARFSGVPGRMQILQAHPI--RAVVDFAHTPKALAKALTALRPTT 357 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI------IH 434 GR+IVV G G+RD KR +G+ A+ LAD A+ T+++ RSED I E+ Sbjct: 358 PGRLIVVIGAAGERDPAKRAPLGRTAVTLADFAVFTEEDARSEDVHAILQEMERGAREAG 417 Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIRE 491 G+ G + K +R +AIR A+ + D +V AGKGHE + ++ + D + +R+ Sbjct: 418 GVRGTHYALKPDRRDAIRYALSLARPGDTVVFAGKGHE--RTLERADETLPWDEAEEVRK 475 Query: 492 ILGLIL 497 LG+ + Sbjct: 476 ALGIAI 481 >gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cupriavidus metallidurans CH34] gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Cupriavidus metallidurans CH34] Length = 515 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 237/493 (48%), Gaps = 44/493 (8%) Query: 32 EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ D+R +Q G +F A ++GN+ DG I +AIA GA AIV Y +F+ Sbjct: 31 QLTGDTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIV----YEADNFAWPHD 86 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L V + + A+ YG N I VTGT+GK+S + ++ ++ Q +G Sbjct: 87 DRVPHLAVSHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCA 146 Query: 146 QIGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG S F +LT TP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 147 TIGTLG--SGFPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGT 204 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TNL +DH+DYH T Y AK RLF K A+I DD + ++ A N Sbjct: 205 GFAVAVLTNLTQDHLDYHGTMAEYEAAKARLFAWDGLKA--AVINRDDGMGQRLL--ASN 260 Query: 263 A----GCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 A +V+ G GK ++ V A + D P+ G Sbjct: 261 AVAVSAPQVIEYGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGA 320 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F V N L G +A G+ ++ L +L V GR E G + VDYAHT ++L Sbjct: 321 FNVSNLLAVLGAALAQGVTWDAAIDALRRLTPVDGRMELFGGHD-APLAVVDYAHTPDAL 379 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L +R + G++ VFGCGGDRD KRP+MG +A LAD ++T DNPRSEDP Sbjct: 380 VQTLTALRPVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLADEVVLTSDNPRSEDPR 439 Query: 427 KIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +I I G+ IE +R AI AI+ DV++VAGKGHE + G K+ Sbjct: 440 EILEAIADGMSDRARAALIE--DRAAAILYAIKHAAPADVVLVAGKGHEATQEI-QGRKR 496 Query: 482 MSVDCDIIREILG 494 D + +R LG Sbjct: 497 PFSDREHVRLTLG 509 >gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2] Length = 490 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 242/483 (50%), Gaps = 45/483 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+ S ++ G +F+ G K D H IP+ + +GA A+VV L DF Sbjct: 24 EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDL-DF------ 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V ++R F + AS + +++L T + + + L Sbjct: 77 --PHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGERGSV 134 Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 T+ + SS+ D +TTP I + A+ G ++E SSH L Q R++G++ Sbjct: 135 LTTAVKRILGSSYYDD--ITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN+ RDH+D+H T + Y AK+ LF+ LL + A++ E + A N Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGVAVL-------NESLADAFNR 244 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 R ++ G A + + ++ EG F P G+F YN Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIGDFNAYN 296 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373 A A +G D + LE V GRFE V G G + VD+AH+ ++LE +L Sbjct: 297 AAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LA++ I+T D+PR EDPE+I ++I Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLANVVILTTDDPRGEDPEQIMEDLI 416 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GI ++ +R EAI TA+ + N+ D +V+AG+GHE I+ +K D +++ Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFKDREVVE 476 Query: 491 EIL 493 EIL Sbjct: 477 EIL 479 >gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RCC307] gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. RCC307] Length = 494 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 237/476 (49%), Gaps = 24/476 (5%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P Q + + + S DSR I+ G +FV + G + DG F A+ QGA A V+ + Q+ Sbjct: 20 PQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVIGPDAAQQE 79 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 A P+LVV + + + + HP + L++ G +G + + I Sbjct: 80 PPAP---GDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLI---EH 133 Query: 142 LSSFQIGPTSTISSFAQDNRL---------TTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 L+ PT+ + + A NR TTP L L+ + G + ++E SSH Sbjct: 134 LALACGSPTALMGTLA--NRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSH 191 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 LDQ R+ G + FTNL +DH+DYH T + YF AK +LF K A++ +DD + Sbjct: 192 ALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQ-AVVNSDDLH 250 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ +R + C S+ + + + + + D F PL G F + Sbjct: 251 GRQLAQRLGDQ-CWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNL 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G+ + G+ +L+ LE + VPGR E V S + VDYAHT + L+ Sbjct: 310 MNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHTPDGLDNA 369 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R G++I VFGCGGDRD+ KRP MG IA LAD +VT DNPR+EDP++I ++ Sbjct: 370 LQAARPFAEGKLICVFGCGGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDDV 429 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + GIP + +R AI AI D++++AGKGHE I+ G K+ D Sbjct: 430 VAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKGHEDYQIL--GTTKVHFD 483 >gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella woodyi ATCC 51908] gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC 51908] Length = 502 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 149/457 (32%), Positives = 231/457 (50%), Gaps = 22/457 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++S DSR + G +FVA+ G++ DG +I A GA+ +V + ++ Sbjct: 19 VNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSLVHTDNPEMHGKVLTSNS 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 T I +R+ LS A++ Y E ++ VTGT+GK+S+ + Q+ G + Sbjct: 79 TQIFFFQLSRQ-LSALAAQAYPLPVERLKLVGVTGTNGKTSITQLMAQLLVCLGKQPAVM 137 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + D+ TT PI + L+ + G ++E SSHGL Q R+D + Sbjct: 138 GTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVSSHGLIQARVDAVPFDL 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL RDH+DYH T QAY AK RLF+ P +I DD K+ + ++ +A + Sbjct: 198 AIFTNLSRDHLDYHGTMQAYGEAKFRLFK--FPSLKSGVINLDDDLGKQWLAQSDSA--K 253 Query: 267 VLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G + + AI+ K + + EG + PL G F + N L Sbjct: 254 LIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRAKLVWPEGCG-NIDSPLLGAFNLSNLLA 312 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +G D +L + KL+ V GR E T G + VDYAHT +++E LK +R Sbjct: 313 ALAGLYQLGFDMNALLNAVPKLNAVAGRMEQF-TTENGITLVVDYAHTPDAIEQALKALR 371 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G + +FGCGGDRD+GKRP+M + A AD +VT DN RSE P++I +++ G+ Sbjct: 372 GHCEGELWCLFGCGGDRDKGKRPLMAQSAEAYADRIMVTSDNARSESPDEIINDVLAGLN 431 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + + +R AIR + D++++AGKGHET Sbjct: 432 RPERAVTQVDRELAIREVLAAAKPGDLILLAGKGHET 468 >gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii 37] gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas ingrahamii 37] Length = 509 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 238/471 (50%), Gaps = 42/471 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ ++ DSR I G++F+A+ G + DG LFI +++ GA A++ + + TI+S Sbjct: 26 RVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQVTIKS 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+ V LS A R + + + ++AVTGT+GK+++AS + G S Q Sbjct: 86 GVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGKQSAQ 145 Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G F Q + TT I + L Q + +E SSHGLDQ R+ + Sbjct: 146 MGTIGN-GLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGRVSAVPF 204 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + FTNL RDH+DYH + + Y AK LFE+ K+ II ADD + + +A Sbjct: 205 FSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQR--IINADDPIGAQWLTDFPDA- 261 Query: 265 CRVLSVGYQGKFI-----HLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYN-A 315 +S G+ K + +L+ ++ Q VT S GK P G+F V N A Sbjct: 262 ---ISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFHSSWGKGV-VSAPFYGDFNVSNLA 317 Query: 316 LVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V L + + +EH++ KL VPGR E + VDYAHT ++LE Sbjct: 318 AVLTQLLV-----ENVSIEHVQTIFPKLSTVPGRMEQYYFAEKNITFVVDYAHTPDALEK 372 Query: 372 ILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L + + +SGR+I VFGCGGDRD GKRP M IA A ++ DDNPR+E+ + I Sbjct: 373 VLLALQKHKSSGRLICVFGCGGDRDTGKRPQMANIAESYAQKVVLVDDNPRTENAQSIIE 432 Query: 431 EIIHGIPGFIEKGNRIEAI---RTAIEML----NKQDVLVVAGKGHETVHI 474 +I+ G + +R+E I R A+ L D++++AGKGHE I Sbjct: 433 DILQGFA----RPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKGHEDYQI 479 >gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Paulinella chromatophora] Length = 508 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 234/468 (50%), Gaps = 18/468 (3%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F ++ +RKI + ++S+ I G +F+ + G G F A+ GA + + Sbjct: 16 FGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGAITALGRKIAVIS 75 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC 137 D + +NT + SL A+ + + P +L VTGT+GK++V ++ + Sbjct: 76 DLP--LVANTLTNADKQIAHWTSLLATNFW-QQPSRWMILLGVTGTNGKTTVTHLIEHLS 132 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 SG S G + ++ + TTP L L+ G ++E SSH L+Q Sbjct: 133 TASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGSQIGAMEVSSHALNQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESP-AIIYADDAYSK 254 +R+ G + FTNL +DH+DYH + +AYF +K LFE LL P A+I +DD + Sbjct: 193 YRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANHGPLAVINSDDLWGA 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +R + R + + +++ + ++ G+ + F P+ G F + N Sbjct: 253 RLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY-FSSPMVGYFNLMN 311 Query: 315 ALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSL 369 L A G+ I G + +L+ ++ +PGR E + + +DYAHT + L Sbjct: 312 LLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSPSVIIDYAHTPDGL 371 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L R+ G +I VFGCGG+RD+ KRPIMG+ A LAD IVT DNPR+E+PE+I Sbjct: 372 EKALIAARSFVKGSLICVFGCGGNRDKRKRPIMGETAARLADEIIVTSDNPRTENPEEII 431 Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +I+ GIP + + +R AI +++ + D++++ GKGHE I Sbjct: 432 KDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVGKGHEDYQI 479 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 145/451 (32%), Positives = 222/451 (49%), Gaps = 34/451 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +++DSR ++ +F+A G DG +I AIA+GA ++ S Q F Sbjct: 386 VHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDS----QGFDWKPEWQ 441 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + + + + + AS+ Y E + + VTGT+GK++V ++ Q + S I Sbjct: 442 VHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVI 501 Query: 148 GPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ + A Q + TTP P+ L K L+ V V++E SSHGLDQ R++G+ Sbjct: 502 G---TLGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVA 558 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+ RDH+DYH T +AY AK +LF+ S A++ ADD + +++ Sbjct: 559 FDVAVLTNITRDHLDYHLTMEAYQAAKRKLFD--WQTLSAAVVNADDPFGLALIEDLRKQ 616 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G +VLS G + +H ++ + D G+F VYNAL Sbjct: 617 GKKVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCL 676 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI 379 + + L+ + L V GR + G GG + VDYAHT ++LE L +R+ Sbjct: 677 LVNEVALPAALQAVSGLVPVAGRMQMFG----GGDLPLVVVDYAHTPDALEKALHTLRSQ 732 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G++ VFGCGGDRD GKR MG+IA +LAD I+T+DNPRSE+P I A I G+ Sbjct: 733 ARGKLACVFGCGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGM--- 789 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 A +E + + + KGHE Sbjct: 790 --------AREATVETDRAKAIALAVSKGHE 812 >gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia vafer str. BVAF] Length = 515 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 256/512 (50%), Gaps = 35/512 (6%) Query: 8 YKDFPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 Y FP IN+L + W + I + DSR++ G +F+AI G+K DG L+I Sbjct: 8 YYIFP--INKLRELVIPWVFNELISSALVITALQLDSRNVTVGNLFIAIKGHKTDGRLYI 65 Query: 61 PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 AI GA A+++ S + Q+ + S PI+ + +S A R YG HP Sbjct: 66 KHAIKNGAVAVLLESTNNDNFLAQNIVNNVSSCVPIINFYKLNQAVSSIAGRFYG-HPSR 124 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLA 171 N++ VTGT+GK++++ + + G S +G I S N TT S I Sbjct: 125 NLNLIGVTGTNGKTTISHLLANWVELLGEKSAVMGTIGYGMIGSMCVSN-CTTFSAIDTQ 183 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + L+ G+ V++E SSHGLDQ+R+D + F+NL DH+DYH Y AK Sbjct: 184 RILNQFIQSGIKFVAMEVSSHGLDQYRVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKW 243 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHN 287 RLF EL + +I DD E + N+ L ++G++I L K Sbjct: 244 RLFSELCV--TNYVINVDDYIGYEWLSYLPNSVAVTIQDNLPKFWKGEWIKLVKANYFVY 301 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V + L GE V N L+A G + +G ++L ++L + GR E Sbjct: 302 GTDVFFHSSWGNGIIRSQLLGECNVSNLLLALGALLVLGYPLMVLLSIADQLKPICGRLE 361 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 + ++ I VDYAHT ++LE IL+ + + G++ VFGCGG+RD+ KR MG + Sbjct: 362 KFKSFNK-PTIIVDYAHTPDALEKILRFLGAQLCKKGKLWCVFGCGGNRDKLKRSRMGIV 420 Query: 406 ALDLADIAIVTDDNPRSEDPEK----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 A +D ++TDDNPR+E+ + I +I H I K NR++AI TAI + D Sbjct: 421 AERYSDYVVITDDNPRTENSQSIIDDIILKIKHSEKITIIK-NRVQAIETAICQADSNDF 479 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKGHE+ IV N K S D DI+R IL Sbjct: 480 ILIAGKGHESYQIVGNDYLKYS-DQDIVRNIL 510 >gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus MM3] Length = 500 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 229/467 (49%), Gaps = 32/467 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 29 EITGLEMDSRKITSGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS Y +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYS-YPSNEMKLIGITGTNGKTTTSYLLEKILTDYGF 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G I S + T L + L + + + +E +S GL R+ G Sbjct: 139 QTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEV 256 FTNL +DH+DYH T + Y + K LF L + AI+ ADD S E Sbjct: 199 CNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSATDKKIAILNADDP-SVEY 257 Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G G + K + Q +S + + L G F VYNA Sbjct: 258 FKKVTSA--EVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEIEINLNLVGRFNVYNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L + GI + + L + + GR E + N + + VDYAH+ ++LE +L Sbjct: 316 LAVITATLVEGIPLTNISDSLSHVKSIEGRMEIIDEN-QDFLVIVDYAHSPDALENVLST 374 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + +II VFGCGGDRD KRPIMG+IA +D +T DNPRSEDP+ I +I G Sbjct: 375 ISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGGYSDFVYITSDNPRSEDPQAIMKDIEKG 434 Query: 436 IPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++E AI AI+M + D++++AGKGHET I+ + Sbjct: 435 FSQNNNLNYKVEVDRELAINHAIQMASSNDIVLIAGKGHETYQILKD 481 >gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. AS9601] gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. AS9601] Length = 511 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 136/477 (28%), Positives = 238/477 (49%), Gaps = 36/477 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++IN +S +S+ +Q G +F+ + G DG F +AI GAEA ++ A + +I Sbjct: 23 DQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAIIGPAAKQK--IGSI 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 +++ DN + + + + + VTGT+GK+++ ++ + ++ G + Sbjct: 81 DRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFLLEYLLKKLGKKT 140 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G + F++ TT L L+ +E SSH + Q+R+ G + Sbjct: 141 ALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILEVSSHSIAQNRISGCE 200 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLPKESPAIIYADDAY----SKEVM 257 A FTNL +DH+DYH ++YF K +LF L K+ ++ DD + S ++ Sbjct: 201 FEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGICVLNHDDHWISKLSSDLK 260 Query: 258 KRAHNAGCRVLSVGYQG---------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 KR+ ++ ++ KF C H ++ PL G Sbjct: 261 KRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE--------KIQLFVPLVG 312 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRG-GRIYVDYA 363 EF + N + A + + + + ++ PGR E + + SR + VDYA Sbjct: 313 EFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRSLPTVIVDYA 372 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT + L+ +L++I+ + G++I VFGCGGDRD+ KRP+MG IA +L+D +T DNPR+E Sbjct: 373 HTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQLFITSDNPRTE 432 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +P+KI +I+ GI I + +R +AI +I+ NK+D++++AGKGHE I+ + Sbjct: 433 EPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAGKGHEDYQILND 489 >gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium kansasii ATCC 12478] Length = 528 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 234/474 (49%), Gaps = 41/474 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P +R+ +I V+ ++ +Q G +F A+ G+ G +AI +GA A V++ A + Sbjct: 36 YPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIERGAVA-VLTDADGVA 94 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQ 138 A ++ P+LV R L A+ +YG+ E + V T + V+ + Sbjct: 95 AMGAHA-ASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTSGKTTTTYLVEAGLR 153 Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + IG T I D + LTTP L L+ +S +GV V +E SSH L Sbjct: 154 AGGRVAGLIG-TIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVDTVVMEVSSHALAL 212 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKE 255 R+DG + G FTNL RDH+D+H T + YF AK LF+ + ++ DD + Sbjct: 213 GRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAGTVVVCVDDDAGRA 272 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------- 305 + +RA +A ++V + + H + V V + G++F + P Sbjct: 273 MAERAGDA----ITVSARDRAAHWRAV------DVVPMGAAGQEFTAIDPAGVQHRVRIG 322 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYA 363 LPG + V N L+A + +IG+ L + V PGR E V RG VDYA Sbjct: 323 LPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARV-PGRLEQV---DRGQDFLALVDYA 378 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H +L +L + T R+ VVFG GG+RD GKR MG +A +LAD+ +VTDDNPR E Sbjct: 379 HKPGALRAVLTTL-TSPDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRGE 437 Query: 424 DPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DP IR EI+ G +E +R +AIR A+ DV++VAGKGHET Sbjct: 438 DPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKGHET 491 >gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila RKU-10] Length = 490 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 154/481 (32%), Positives = 241/481 (50%), Gaps = 41/481 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+ S ++ G +F+ G K D H IP+ I +GA A+VV L DF Sbjct: 24 EITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEKEIDL-DF------ 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V ++R F + AS + + +++L T + V + L Sbjct: 77 --PHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTTVMIYHMLTSLGEKGSV 134 Query: 149 PTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ + ++ + +TTP I + A+ G ++E SSH L Q R++G++ Sbjct: 135 LTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVRFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTN+ RDH+D+H T + Y AK+ LF+ LL + AI+ E + N Sbjct: 195 VGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGIAIL-------NESLADTFNRKS 246 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316 R ++ G A + + ++ EG F P G+F YNA Sbjct: 247 RKITFGTSKN--------ADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYNAA 298 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKN 375 A +G D + LE V GRFE V G G + VD+AH+ ++LE +LKN Sbjct: 299 AAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLLKN 358 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T D+PR EDPE+I ++I G Sbjct: 359 VRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLIKG 418 Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I ++ +R EAI TA+ + N+ D +V+AG+GHE I+ +K D +++ EI Sbjct: 419 IDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVEEI 478 Query: 493 L 493 + Sbjct: 479 I 479 >gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Candidatus Vesicomyosocius okutanii HA] Length = 464 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 239/469 (50%), Gaps = 31/469 (6%) Query: 15 INQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I+QL I +Q + +I + +++ Q G +F+A+ G +G +I QAI +G AI+V Sbjct: 3 ISQLLINIIQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKGCVAILV 62 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132 S I P + V+N +L A+ Y + +++ VTGT+GK+SV Sbjct: 63 DSK--------EIECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVTYL 114 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + Q+ ++ G+ + IG T I+ Q TTP + L + L + Q + + +E SSH Sbjct: 115 ISQLLEKLGVKNGLIG-TLGITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIEISSH 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L Q+R+ G+ + FTNL +DH+DYH T Y K RLF L I+ DD + Sbjct: 174 ALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFT--LNCVKSVILNQDDHH 231 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K +S G + L +I QQ + V+ + F P GEF + Sbjct: 232 YKHFLK---------VSKGKKQTSYSLNDFNSIKIIQQGFL-VQLDHYVFEIPFLGEFNL 281 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A+G ++ + +L PGR + + ++DYAHT N+LE Sbjct: 282 LNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQIN----HYHAWIDYAHTPNALENA 337 Query: 373 LKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + + +I +VFGCGG+RD+ KR MG+IA LAD I+T+DNPRSE+P+ I + Sbjct: 338 ITTLQKHYPNFKIRIVFGCGGNRDRNKRSKMGRIASKLADSIILTNDNPRSENPQTIIND 397 Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I++GI E +R AI TA+ L K + L++ GKGHET + N Sbjct: 398 ILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITGKGHETTQQLFN 446 >gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase [Acinetobacter baumannii ATCC 17978] Length = 414 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 35/378 (9%) Query: 114 PENILAVTGTSGKSSVASFV-------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 P I+AVTGT+GK++++ + QQ C G + I P T S+ TT Sbjct: 17 PLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPNLTPSTH------TTLD 70 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 + L AL + QG T S+EASSHGL+Q RL+G + ++NL RDH+DYH T +AY Sbjct: 71 ALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAY 130 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 AK RLF+ A+I DDA++ ++K A N + + Y L + A + Sbjct: 131 AEAKARLFQ--FNSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYS-----LTQNTADY 183 Query: 287 NKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 ++ S+ G F+ + PL G F V N + A G D ++ + Sbjct: 184 YITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQALVNFVP 243 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL PGR + + + R VDYAHT ++L +LK ++ S ++ VFGCGGDRD+G Sbjct: 244 KLIGAPGRMQVIRDDER--LFVVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGGDRDRG 301 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI 453 KRP+M + ALD A+ I+T DNPR+EDPE+I A++ GI E +R EAI+ Sbjct: 302 KRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREAIKFVA 361 Query: 454 EMLNKQDVLVVAGKGHET 471 E D++V+AGKGHE Sbjct: 362 EQAQAGDIVVIAGKGHEN 379 >gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella capsiferriformans ES-2] Length = 503 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 236/462 (51%), Gaps = 28/462 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N + +DSR +++G +F+A G K DG FI QAI QGA A++ + + D + T+ Sbjct: 16 LNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWDAHNFVWDKAWTV--- 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + + + R A +YG+ +++ + VTGT+GK+S ++ Q +G I Sbjct: 73 -PNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCALI 131 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + + + TTP I + L+ + G ++E SSH L Q R++G++ Sbjct: 132 GTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRVNGVRFDV 191 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TNL RDH+DYH ++Y K RLF+ + A+I DDA+ E+ + + Sbjct: 192 ALLTNLSRDHLDYHGDMESYAATKRRLFD--WQSLNYAVINLDDAFGAELALQLVDKTVE 249 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFPLPGEFQVYNA 315 V+ G + + L + + V + ++ + G F V N Sbjct: 250 VIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRSSWGAAQLSTQMVGRFNVSNL 309 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A G+ + + + L + V GR + +G N + + VDYAHT ++LE +L Sbjct: 310 LGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQP-LVIVDYAHTPDALEKVLLA 368 Query: 376 I-----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + T G++I VFGCGGDRD+GKR +MG++A AD IVT DNPRSED ++I Sbjct: 369 LCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMGRVAEKFADRCIVTSDNPRSEDAQQIIG 428 Query: 431 EIIHGI-PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+I G+ G E +R +AI AI M + D++++AGKGHE Sbjct: 429 EVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIAGKGHE 470 >gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured marine microorganism HF4000_APKG2M17] Length = 492 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 162/464 (34%), Positives = 236/464 (50%), Gaps = 56/464 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + + FVA+ G DGHLFI +A+ GA AIV S ++ + I +V Sbjct: 33 DSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAV--------AGPDIALV 84 Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 ++R+ L+ AS L P + + AVTGT+GK++VA+ V + + S IG T Sbjct: 85 KDSRRALAELAS-LMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFIGTTGY 143 Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + F + R TTPS + + + L + + G +H S+E SSH +DQ R+ + FT Sbjct: 144 RDGTHFYEAVR-TTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRDVDVALFT 202 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL RDH+DYH T + YF AK +LF+E LP + A++ DD K + A + V++ Sbjct: 203 NLTRDHLDYHSTFELYFAAKKKLFDE-LPDGAVAVVNVDDPRGKGI---AADTTGSVITF 258 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNALVAAG 320 G + V+ S+EG + L F L G + N A Sbjct: 259 GSD-------------DHSDVSFSIEGNELSGLDLTIDGHRRRFQLAGTYNASNLAAAYA 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 A+G+ + ++ L V GRFE F G G + VDYAHT ++L+ +L+ + Sbjct: 306 ASRALGLSALESIDALSSSPPVEGRFERMQFEG----GTMVIVDYAHTPDALKNVLEATL 361 Query: 377 RTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ G + +FGCGGDRD GKR MG IA LA IVT DNPR+EDP+ I +I G Sbjct: 362 ESMRPGSTLWCIFGCGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDIRQG 421 Query: 436 I----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + F E R R A M++ D LV+AGKGHET ++ Sbjct: 422 LLKPEDAFWEIDRRDAISRAAASMVSG-DTLVLAGKGHETYQVI 464 >gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter arcticus 273-4] Length = 584 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 33/414 (7%) Query: 91 PILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L V N R FL SL +RL + ++AVTGT+GK++++ V Q+ Q +G+SS Sbjct: 156 PVLYVPNIRDFLGSLIQARLQYQQRVTLPTVVAVTGTNGKTTISQLVAQLTQLTGMSSAV 215 Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + + Q + TT + + + L + +G +++EASSHGLDQ RL G+ + Sbjct: 216 MGTAGNGRLGALVQASH-TTGDTLAVQQFLHQMGKEGAELLALEASSHGLDQQRLQGMPV 274 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263 +TNL RDH+DYH Y AK +LF++ P + AII DD Y++ ++ AH + Sbjct: 275 SVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEYAQIMLDTAHAS 334 Query: 264 GCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGK--DFDFLFPLPGEFQV 312 +V L F+ ++H V IS+ +GK D + PL G F V Sbjct: 335 HLKVWTYSLDPSKTATFVAADITPSLHG---VEISLCTDFGDGKVNHLDIVSPLLGRFNV 391 Query: 313 YNALVAAGLCIA----IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 N L A +A GID ++ + +L GR + V +N G VDYAHT ++ Sbjct: 392 ANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGAVGRMQRVPSND--GCFIVDYAHTPDA 449 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +L +++T G++ VFGCGGDRD GKRP+M + L AD I+T DNPR+EDP I Sbjct: 450 LSQVLASLKTHCKGQLWAVFGCGGDRDTGKRPLMAQAGLAGADKVILTADNPRTEDPNVI 509 Query: 429 RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQ----DVLVVAGKGHETVHIVTN 477 ++ G+ + IE+ R TAIE Q D++V+AGKGHET + N Sbjct: 510 LQDMQAGMSTEQYQRTHIESARQTAIEYAVSQAAADDIVVIAGKGHETYQEINN 563 >gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida F1] Length = 496 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 162/485 (33%), Positives = 245/485 (50%), Gaps = 42/485 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR+++ G +F+A+ G K DG + IA + AY Sbjct: 9 LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 Q S ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 65 QGASVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L+ L G V++E SSH Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ ++ TNL RDH+DYH + +AY AK +LF P ++ DD + Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238 Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303 + + + R+LS + L + V + + ++ +G+ Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERI-LR 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G F + N + A + + +D AL +L+ +L GR + +G + + VD Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP +I +I PGF + R EAI I DV+V+AGKGHE + Sbjct: 415 TEDPSRIFDDI---RPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471 Query: 476 TNGEK 480 NGE+ Sbjct: 472 -NGER 475 >gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Jonquetella anthropi E3_33 E1] Length = 497 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 156/489 (31%), Positives = 239/489 (48%), Gaps = 48/489 (9%) Query: 25 WRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 W + ++ + + SDSR ++ G +F + G DGH FI + + G ++ D Sbjct: 25 WNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIERPTDGLD-- 82 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + V + R + A+RL G + + +AVTGT+GKS+ + ++ + G Sbjct: 83 -------NWIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACG 135 Query: 142 LSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + + IG T+ D TTP L + + + G +E SSHGL Q Sbjct: 136 IKTGLIG---TVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQG 192 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ G FTNL +H+DYH T + YF AK LF E L + + D + +++ Sbjct: 193 RISGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLA 252 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD------FL----FPL 306 R ++ L+ G G + +K ++T+ G DFD FL P+ Sbjct: 253 ARFPSS----LTWGLGDGADVRVKA-------DRLTMKAGGSDFDLQVDGQFLGRVALPM 301 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V NAL AA LCI +G V++ LE + VPGR E + S G + VD+AHT Sbjct: 302 TGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINL-SNGVTVIVDFAHTE 360 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L +L +R + R+I VFG GG+R G RP +GKIA AD IVT DNPR+EDP Sbjct: 361 IALTNLLATLRPLAK-RLISVFGHGGERFAGARPELGKIAGQTADRVIVTMDNPRNEDPA 419 Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +I I+ G+ G F +R +A+ A++ + DV+V++GKG E ++ G K Sbjct: 420 EIARAIVAGLEGGKASFSTVLSRRDAVFAALDEAERGDVVVISGKGAEP-YLEIKGVKYP 478 Query: 483 SVDCDIIRE 491 D D++ E Sbjct: 479 YSDRDVVGE 487 >gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita DSM 44233] Length = 533 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 150/444 (33%), Positives = 220/444 (49%), Gaps = 31/444 (6%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ G++ G + QA+ +GA A++ A + + + T + +LVV+ R+ L Sbjct: 37 LFAALPGSRAHGAGYAGQALERGAAAVLTDRAGA-ELLAGTDLGSVALLVVERPREHLGA 95 Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNR 161 A +LYG ++ VTGTSGK++ ++ G S IG T I + Sbjct: 96 IARQLYGDPSRRLAVVGVTGTSGKTTTCYLLEAALAADGSRSAVIGTVQTRIDGQITPSA 155 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L L+ + +GV V++E SSH L R+ G + G+FTNL +DH+D+H Sbjct: 156 LTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFAVGAFTNLSQDHLDFHH 215 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---AHNAGCRVLSVGYQGKFIH 278 + YF AK LF+ + +I D Y + A R + + + + Sbjct: 216 DMEDYFRAKAMLFDG---RAGAHVIDVDTEYGARLAAEHPEALTVSDRPGAADWSVEMVT 272 Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 L A + Q V +S GK +PG F V NA VA A+G D + L Sbjct: 273 L----AANGVQHVVLSGPGKRQVTLDLAIPGAFNVGNAAVALACVDALGRDVQQAADALA 328 Query: 338 KLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 + VVPGR E V G+ + VDYAH ++ +L I +G +IVV G GGDR Sbjct: 329 TV-VVPGRMERVDA----GQDFLAVVDYAHKPGAVAAVLDAIGQGLAGPLIVVLGAGGDR 383 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRI 446 D GKRP+MG + AD+ IVTDDNPRSE P IRA+++ G +E G+R Sbjct: 384 DTGKRPMMGAESAARADVLIVTDDNPRSERPADIRAQVLAGAAPVADRRPCQVLEIGDRR 443 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470 AIR A+++ +V+AGKGHE Sbjct: 444 AAIRRAVQLAGTGGAVVIAGKGHE 467 >gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena XCL-2] gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thiomicrospira crunogena XCL-2] Length = 505 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 250/491 (50%), Gaps = 37/491 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT- 85 E ++ ++ DSR ++ G F+A+ G + G QAI QGA I+ A L +F+ + Sbjct: 24 EVDVSALTIDSRQVERGTAFIALQGGQSHGMAHAEQAIKQGASCILTDRA-GLVEFNHSH 82 Query: 86 ---IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 + P++ V + + L+ FA Y E N++ VTGT+GK+S + ++ Q+ + Sbjct: 83 QQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSERVNVIGVTGTNGKTSSSHYIAQML--T 140 Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 L+ ++ T+ + N TT + L L+ + + +V +E SSH ++ Sbjct: 141 ALNQ-KVALLGTLGNGWFGNLHPSINTTVDVVRLNHLLNGFAEEQADYVVMEVSSHAIEL 199 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ GI + T + RDH+D+H+T++AY AK +LF L +I ADD + + Sbjct: 200 GRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKLF--LTYSSRYQVINADDKVGQAL 257 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVC--------AIHNKQQVTISVEGKDFDFLFPLPG 308 H + V Y + VC IH T +++G F PL G Sbjct: 258 F---HELSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHG----TFTLQGGSIPFDVPLMG 310 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F + N L A + A G + + + L + V GR E + T + +DYAHT ++ Sbjct: 311 QFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELL-TQPGYPSVLIDYAHTPDA 369 Query: 369 LEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 LE ILK ++ S R + VVFGCGGDRD GKRP+MG+IA A+ ++TDDNPR+E P Sbjct: 370 LEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEIAETYANEVVLTDDNPRTELP 429 Query: 426 EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 + I A+I G+ + +R EAI AI+ + D++V+AGKGHE + MS Sbjct: 430 DAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAGKGHEDYQEIQGKRWPMS- 488 Query: 485 DCDIIREILGL 495 D I++++L + Sbjct: 489 DQKIVKDLLSM 499 >gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7] Length = 934 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 154/472 (32%), Positives = 241/472 (51%), Gaps = 33/472 (6%) Query: 23 MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W R ++ ++ D+R + AG +F A VG DG +I QA+ GA AIV+ + Sbjct: 10 ISWLSRHVSPKAQLCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQAD--- 66 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137 SAT + P+L V + L Y + E+ ++AVTGT+GK+S ++ Sbjct: 67 DRASATPAIDVPVLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAAL 126 Query: 138 QRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G IG + LTTP + + ++L+ + + G V++EASS GLD Sbjct: 127 NAEGTPCGTIGTLGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGAQVVALEASSIGLD 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q RLD ++++ +FTNL DH+DYH T Y AK LF P A++ DD K+ Sbjct: 187 QGRLDQVRIVIAAFTNLTHDHLDYHGTLDNYQRAKFSLFA--WPGLRGAVVNVDDPAGKQ 244 Query: 256 VMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ A S+ Q + IH + + N ++ +G L L GE Sbjct: 245 LVSTLPPASTLAYSISGHAEATIQAQDIHAGRYGLVFN----VVTRDGA-VQLLTRLVGE 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------GTNSRGGRIYVDYA 363 V N L+ G+ +G D + + L L V GR + V G + VDYA Sbjct: 300 HNVANLLLVTGVLQQLGWDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVDYA 359 Query: 364 HTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++L+ + L+++ + G++I VFGCGG RD+ KRP+MG+IA++LAD ++T+DNP Sbjct: 360 HTPDALKRALLALRDVARVRGGKLICVFGCGGSRDRSKRPMMGRIAVELADEVVLTNDNP 419 Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 R E+P I A+I G+ + +R AI ++I + DV+++AGKGHET Sbjct: 420 RLEEPLDIIAQIKSGMSTAARVELDRALAILSSIWAADAHDVVLLAGKGHET 471 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 149/340 (43%), Gaps = 48/340 (14%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F + W++ +S+D+R I G +FVA+ G DGH ++ A+ GA A VV + Sbjct: 490 FALSWQQGM--SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEH----K 543 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D + + P V+ +TR+ L ++ +H ++AVTG++GK++ + I ++S Sbjct: 544 DTAVAL----PQFVLGDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQS 599 Query: 141 GLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G +++++ +N + P + L+ Q V +H + L Sbjct: 600 P------GEEASLATRGNLNNDIGVPLTVL------RLNRQHRAAVFELGMNHPGEISLL 647 Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 GI + N R+H ++ T +A + ++LP + A+ DDAYS Sbjct: 648 AGIAQPTVALVNNAQREHQEFMLTVEAVARENGTVI-DMLPVDGIAVFPGDDAYSD---L 703 Query: 259 RAHNAGCR-VLSVGYQGKF------IHLK---KVCAIHNK-QQVTISVEGKDFDFLFPLP 307 A AG R VL G+ F IH + VC IH T+++ P Sbjct: 704 WAELAGTRTVLRFGFSPDFDVYADQIHAEPTHTVCCIHTPIGSATLALAS---------P 754 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 G + NAL AA A G+ +++ LE + V GR + Sbjct: 755 GVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSGRMQ 794 >gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas europaea ATCC 19718] gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas europaea ATCC 19718] Length = 521 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 160/510 (31%), Positives = 249/510 (48%), Gaps = 48/510 (9%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+NQL + K+ + +DSR ++ G F+A G + D IPQAIA+G AI+ Sbjct: 18 LLNQLDV--------KVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAII- 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA 130 + Q FS P L V R AS YG HP ++ +TGT+GK++ + Sbjct: 69 ---WEKQGFSWKPEWKIPNLGVAGLRHEAGKIASEAYG-HPSRHLWLVGITGTNGKTTCS 124 Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q G + IG + TTP +YL + ++ QG + + +EA Sbjct: 125 QWYAQAMAALGKKTAVIGTLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEA 184 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q RL G + TNL RDH+DYH + AY AK +LF A++ D Sbjct: 185 SSHGLSQDRLIGSEFAVAVLTNLTRDHLDYHDSMDAYAAAKAKLF--FWEGLQYAVLNLD 242 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303 + E+ ++ ++ G++ + +K+ N Q T + G D +F Sbjct: 243 EVLGVELSQQLAGKDLSIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQI-GFDVEFCN 301 Query: 304 ------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + G + YN L +A ID + L ++ +PGR E +G ++ Sbjct: 302 RYASLQCNVTGRYNAYNLLAVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQP-V 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKI 405 + VDYAHT ++L +L +R +G ++I V GCGGDRD+GKRP++G+I Sbjct: 361 VIVDYAHTPDALNEVLTGLRETLAGTRIKKRIRKNQAKLICVIGCGGDRDRGKRPLIGEI 420 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463 A LAD I+T DNPR+E+P I +E++ G G + +R AI AI K D+++ Sbjct: 421 ASRLADEVIITSDNPRNENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVL 480 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKG ET + G+K D +++R++L Sbjct: 481 IAGKGAETSQEI-QGKKYPYDDREVVRQVL 509 >gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Xylella fastidiosa 9a5c] Length = 495 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 240/491 (48%), Gaps = 42/491 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79 Q R+ I+ + DSR +Q G FVA+ G G FI A A+GA AI+ S+ Sbjct: 16 QARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136 D + + V R L A R +G HP ++ VTGT+GK+S + Q Sbjct: 76 PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125 Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G+ S G T + + Q TTP + L + L+ L +G V++E SSH L Sbjct: 126 WHCLGVRSATCG-TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHAL 184 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 DQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD + Sbjct: 185 DQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDPFGL 242 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------P 305 ++ G R + V G A Q ++++++G FD + P Sbjct: 243 RLLH-GLAKGMRRVGVSVCGH------TDADVMAQHLSLNLQGIGFDLVIGADHASVRSP 295 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F V N L AG+ A+ + + L L + GR +G + VDYAHT Sbjct: 296 LMGRFNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHT 355 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++L +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ VTDDNPR ED Sbjct: 356 PDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDG 415 Query: 426 EKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + I A+I+ G P ++ + +R AI AI + + +DV+++AGKGHE V G + Sbjct: 416 DGIVADILAGFARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKGHERYQEVA-GVRHP 474 Query: 483 SVDCDIIREIL 493 D ++ R +L Sbjct: 475 FDDTEVARRVL 485 >gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC 43243] Length = 502 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 232/458 (50%), Gaps = 28/458 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFS-ATIRSNT 90 ++SDSR + AG FV I+G +GH +I I +GA IVVSS Y +Q FS A I N Sbjct: 30 LTSDSRKVTAGGAFVCIMGAVSNGHTYIQDVIGRGAGLIVVSSKYDYMQHFSDAKIPENV 89 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIG 148 ++ D+TR +L ++ +G E + + T K + ++ + + G + IG Sbjct: 90 TVVETDDTRLAYALMSAAWFGYPAEKLFTIGITGTKGKTTTTYMIRNVLESCGHKTGLIG 149 Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 TI + TTP + ++ + + G V +E SS GL +R GI+ G Sbjct: 150 TIETIIGDEHKPAHNTTPESYEIQESFAKMVEAGCEAVVMEVSSQGLMLNRTAGIQFNIG 209 Query: 208 SFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN+ DHI + H + + Y + K +LF + I+ ADD + ++ NA C Sbjct: 210 VFTNIEPDHIGPNEHSSFEDYLSCKAKLFRQC----DIGIVNADDEHVDRILA---NATC 262 Query: 266 RVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGL 321 RV G+ K++ H K V G + D +PG F +YN+L A + Sbjct: 263 RVEKYGFSETADIRAADKELLYEHGKLGTKYHVSGLVNLDIELCMPGNFSIYNSLCAIAV 322 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVDYAHTSNSLEMILKNI 376 +D + + L + V GR + V + R I VDYAH + +LE +LK + Sbjct: 323 TRHFNVDEQRLKKALYDVRV-RGRIDIVDLAEVNASRRDFTIMVDYAHNAMALESLLKTL 381 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + RI+ VFGCGG+RD+ +R MG+++ L+D I+T DNPR+E+PE I A+I+ GI Sbjct: 382 KEYNPKRIVTVFGCGGNRDRDRRFEMGEVSGRLSDFTIITSDNPRNEEPEAIIADIVTGI 441 Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +E +R EAI+ A++ DV+VVAGKGHE Sbjct: 442 SRTSGRHVEIADRREAIKYAVDNAQPGDVIVVAGKGHE 479 >gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia R551-3] gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas maltophilia R551-3] Length = 502 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 151/445 (33%), Positives = 216/445 (48%), Gaps = 19/445 (4%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G FVAI G G F+ QA A GA AI+ A + + + V Sbjct: 29 DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAGAILFEPPAP-----AELPAPVDAIAV 83 Query: 96 DNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 R + A + +G P +A VTGT+GK+S + Q G S IG Sbjct: 84 PGLRARMGAMADQFHGA-PSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGA 142 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + TTP + + L+ L G V++E SSH LDQ R+D + FTN Sbjct: 143 GLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTN 202 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYH +Y AK RLF P A+I DDA+ +++ AG + + + Sbjct: 203 LTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLDDAFGRQLFA-GLPAGVQPIGLS 259 Query: 272 YQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +G + + A+ + ++++G+ PL G F V N L AG A G Sbjct: 260 SRGATDAIVRAEALQLDGRGIAFELAIDGQRAAVQSPLLGRFNVDNLLAVAGTLHAQGQP 319 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 A + E L L + GR +G + VDYAHT ++LE L ++ G + VF Sbjct: 320 LARIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALEQALDSLHGHLQGTLFCVF 379 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445 GCGG+RD GKRP M IA LA+ IVTDDNPR ED + I A+I+ G + +R Sbjct: 380 GCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSR 439 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHE 470 AI A++ N D++++AGKGHE Sbjct: 440 ARAIGLAVKRANAGDIILIAGKGHE 464 >gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1] Length = 518 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 163/479 (34%), Positives = 232/479 (48%), Gaps = 37/479 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPIL 93 +D+R + AG +F A + D H FI AI +GA A++V + FS I SNT L Sbjct: 33 ADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT--L 86 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V + AS Y +++L V TGT+GK+S + ++ G IG Sbjct: 87 AVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLG 146 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 T + TTP L ++L+ L G V++E SSH L Q R++G FT Sbjct: 147 TGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYHQT +AY AK RLF P+ A+I DDA + ++ R ++ Sbjct: 207 NLTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAY 263 Query: 271 GY---QGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALV 317 G QG + A+ V + G F + G F V N L Sbjct: 264 GLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNLLG 323 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKN 375 G +A + L L KL V GR + +G + + +DYAHT ++LE L+ Sbjct: 324 VLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEA 383 Query: 376 IRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R + + R +I +FGCGGDRD KRP+MG IA +AD ++T DNPRSEDP+ I +I Sbjct: 384 LRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVLTSDNPRSEDPQSIIEQI 443 Query: 433 IHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ K RIE AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 AAGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500 >gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio shilonii AK1] Length = 428 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/407 (35%), Positives = 217/407 (53%), Gaps = 28/407 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + DSR IQ G FVAI+G+ DG LFI +A+ GA +++ + + T Sbjct: 32 VSNLELDSRAIQQGDSFVAIIGHTVDGRLFIERAVQAGATSVLAQADSEHKHGEVTYIGE 91 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 PI+ + LS+ A+RLY ++ + ++ VTGT+GK+++ + Q G + +G Sbjct: 92 VPIIHLYQLDTLLSVIAARLY-QYQQQVIGVTGTNGKTTITQLIAQWIGLLGDKAAIMGT 150 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T ++ + TT S I + + L+ L QG + ++E SSHGL Q R+ + G Sbjct: 151 TGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQGAHYTAMEVSSHGLVQGRVAAVPFKLGI 210 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+DYH T + Y AK LF + A++ DD + + +A + Sbjct: 211 FTNLSRDHLDYHGTMEGYEAAKKLLFTGHHCEH--AVLNIDDVVGRRWLSERSDA----I 264 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF-------PLPGEFQVYNALVAAG 320 +V +G+ + + A K + IS+E FD F PL G+F N ++A Sbjct: 265 AVSVEGRQEGERGLWATTVKYSDSGISLE---FDGYFGQGNLQAPLIGQFNASNLMLAFA 321 Query: 321 LCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A+G D +EHL+ KL V GR E T S+ +I VDYAHT ++LE L + Sbjct: 322 SLLALGFD----IEHLQQTAPKLQPVLGRMELFQTTSKP-KIVVDYAHTPDALEKALLAL 376 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 R G++ V+ GCGGDRD+GKRP+M IA LAD I++DDNPRSE Sbjct: 377 RVHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLADHVILSDDNPRSE 423 >gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila RKU-1] gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermotoga petrophila RKU-1] Length = 490 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 241/483 (49%), Gaps = 45/483 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+ S ++ G +F+ G K D H IP+ + +GA A+VV L DF Sbjct: 24 EITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGAVAVVVEKEIDL-DF------ 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V ++R F + AS + +++L T + + + L Sbjct: 77 --PHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTTMMIYHMLTSLGEKGSV 134 Query: 149 PTSTI-----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 T+ + SS+ D +TTP I + A+ G ++E SSH L Q R++G++ Sbjct: 135 LTTAVKRILGSSYYDD--ITTPDAITILSAMKENKEGGGKFFALEVSSHALVQKRVEGVR 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN+ RDH+D+H T + Y AK+ LF+ LL + AI+ E + N Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGIAIL-------NESLADTFNR 244 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 R ++ G A + + ++ EG F P G+F YN Sbjct: 245 KSRKITFGTSKN--------ADYRLGNIEVNWEGTRFVLETPDGLLRVFTKAIGDFNAYN 296 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373 A A +G D + LE V GRFE V G G + VD+AH+ ++LE +L Sbjct: 297 AAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPDALEKLL 356 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 KN+R I+ GR+IVVFG GG+ D+GKRP+M ++A LAD+ I+T D+PR EDPE+I ++I Sbjct: 357 KNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILTTDDPRGEDPEQIMEDLI 416 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 GI ++ +R EAI TA+ + N+ D +V+AG+GHE I+ +K D +++ Sbjct: 417 KGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQIIDEEKKVPFQDREVVE 476 Query: 491 EIL 493 EI+ Sbjct: 477 EII 479 >gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] Length = 504 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 235/465 (50%), Gaps = 40/465 (8%) Query: 32 EVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ SDSR I A +F A G+ DG +I +AI GA+A+V + + F N Sbjct: 23 QLFSDSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVV----FEKEGFDWNPEWN 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L V + + A+ Y +P ++AVTGT+GK+S ++ Q G + Sbjct: 79 VPHLGVMGLKACAASVAAAYY-DYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAV 137 Query: 147 IGPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 IG T ++ F ++ TTP + L + L+ L + V V++EASS G+DQ RL Sbjct: 138 IG-TLGVTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRL 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +GI + G FTN RDH+DYH +Y AK +LF+ P A++ DD +E+ Sbjct: 197 NGIPIDVGLFTNFTRDHLDYHHDMASYKAAKRKLFD--WPGLKHAVLNLDDPMGREL--- 251 Query: 260 AHNAGCRVLSVGYQ----GKFIHLKKVCAI-HNKQQVTISVE--GKDFDFLFPLPGEFQV 312 A R+ GY I + K C I H + S++ L G F Sbjct: 252 ATALKTRISLTGYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNA 311 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L G+ +A GI + L L GR + +G + +D+AHT +++E Sbjct: 312 SNVLGVLGVLLAAGIHWDDAVRTLGDLLPPAGRMQQMG-GKNAPLVVIDFAHTPDAMEKG 370 Query: 373 LKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 L +R + +G++ VFGCGGDRDQGKRP MG ++ + AD IVT DNPRSEDP++I Sbjct: 371 LATLRHVANERNGKLWCVFGCGGDRDQGKRPQMGSVS-ETADFVIVTSDNPRSEDPKEIM 429 Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +II G+ P E +R AI A+ ++ DV+ +AGKGHET Sbjct: 430 KQIISGMEKEPQVYE--DRAMAILQAVRQASQNDVIFLAGKGHET 472 >gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1 [beta proteobacterium KB13] gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1 [beta proteobacterium KB13] Length = 423 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/396 (33%), Positives = 214/396 (54%), Gaps = 25/396 (6%) Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--T 163 R+YG +I VTGT+GK+S A ++ + LS + P+ I + ++D + T Sbjct: 37 RVYGNLNRHIKLYGVTGTNGKTSTAFWLNHL-----LSKLE-KPSKLIGTISKDKVVINT 90 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 TP L + + + + +E SSHG+DQ R+ + G FTNL RDH+DYH+T Sbjct: 91 TPDLFVLYSLFNKGIQKNIKNFVLEVSSHGVDQGRIHELNFEYGIFTNLSRDHLDYHKTM 150 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHL 279 YF +K R F E + KES +I D++Y + ++ + G+ K I++ Sbjct: 151 NNYFLSKERFFIENVKKES--VINIDNSYGMRLANNLIKLNKKIFTFGFSKEANVKIINI 208 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K+ + + ++ + K F + GEF +YN + A +C ID V E +++L Sbjct: 209 KQQFLTNKYSEFSLQIANKIHTFKTNVIGEFNLYNLISAICICYLKKIDIHKVTEVIKRL 268 Query: 340 HVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 V GR + N+ ++ +DYAHT + L+ +L+ I+ I G+I++VFGCGGDRD+G Sbjct: 269 PVPDGRMNVINKTINNIQKKVIIDYAHTPDGLKKLLQTIKKIYQGKILLVFGCGGDRDKG 328 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML 456 KR +MG +A AD +T+DNPR+E+P +I +I G+ + +R +AI AI+ Sbjct: 329 KRKLMGNVANHYADFVCITNDNPRNENPNQIADQICEGVSCLKKIILDRKKAIEYAIKKT 388 Query: 457 NKQDVLVVAGKGHETVHIVTN-----GEKKMSVDCD 487 N ++V+AGKGHE I+ N +KK+ +D + Sbjct: 389 N-YPIVVIAGKGHEKYQIIKNKKIDFSDKKVVMDIN 423 >gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Rhodococcus erythropolis PR4] Length = 544 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 242/472 (51%), Gaps = 28/472 (5%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKF 101 +F A+ G + G F A+ +GA AI+ A L+ A ++ + P+LV N R Sbjct: 67 LFAALPGARTHGAQFAVDALGRGATAILTDEA-GLELIEAAGKAPDRSVPVLVHPNPRDV 125 Query: 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQ 158 L ++ +YG+ E ++ +TGTSGK++ + ++ +G +G T I Sbjct: 126 LGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRV 185 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 + LTTP L + ++ QG+ V +E SSH L R+DGI+ G+FTNL +DH+D Sbjct: 186 PSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIRFDIGAFTNLSQDHLD 245 Query: 219 YHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 +H+ + YF AK RLF+ E + A++ DD + + + + A ++ Sbjct: 246 FHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAE 305 Query: 278 HLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 KV A+ + + + E G+ + LPG + V NA +A + A G+D Sbjct: 306 AEWKVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAA 365 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L + V PGR + + RG VDYAH +LE ++ +R GR+ VV G Sbjct: 366 VRALGTVDV-PGRVQRI---DRGQSFLAVVDYAHKPAALEAVIATLRNQVPGRVAVVVGA 421 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP----GFI-EK 442 GGDRD GKR +MG+ AD+ IVTDDNPR+EDP KIRA ++ G +P G I E Sbjct: 422 GGDRDAGKRTLMGEAGARGADLLIVTDDNPRTEDPAKIRASVMQGAIDVPESERGEIREV 481 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 G+R AI A+ DV++VAGKGHE + +G K D +++ E++G Sbjct: 482 GDRALAIEQAVRWAQPGDVVLVAGKGHEVGQEI-DGVKHPFDDREVLGEMIG 532 >gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis 3_1_45B] gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis 3_1_45B] Length = 510 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 165/483 (34%), Positives = 235/483 (48%), Gaps = 36/483 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G IF A+ G K DG FI A Y + P V Sbjct: 25 DSREVKPGDIFCAVPGEKVDGRTFI----RVAAARGAAGVIYEAETSQRPEHYPLPAKPV 80 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++ R+ L A+R Y + ++ +AVTGT+GK++ + + G S IG Sbjct: 81 EHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGTVGVF 140 Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + Q LTTP L L L G +EASS GLDQ R+ G G FTN Sbjct: 141 FAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVGVFTN 200 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L RDH+DYHQT +AY AK LF P A++ A DA+S++ A G + G Sbjct: 201 LSRDHLDYHQTMEAYGEAKGLLF--AWPGLKAAVLNASDAWSRKYADAAQKNGSEIWVTG 258 Query: 272 YQGK------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +G+ + K++ H + T+ + ++F G F V NAL AA Sbjct: 259 LEGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNALEAA 318 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE----MILKN 375 A G V+ LE L PGR + ++ + VD+ HT ++LE ++ N Sbjct: 319 AAAAACGHPIEKVVRALEALTPPPGRMQIFESDGMPLGV-VDFGHTPDALEKAIECLIPN 377 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R GR+ VFGCGGDRD GKRPIMG+IA L+D IVT DNPR+E+P+ I I+ G Sbjct: 378 ARA-RGGRLWTVFGCGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAIMQG 436 Query: 436 ---IPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 +PG ++ +R EAI A+ + +D+++VAGKGHE I+ +G VD ++ Sbjct: 437 VQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKGHECEQILNDGPHHF-VDGEV 495 Query: 489 IRE 491 +RE Sbjct: 496 LRE 498 >gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Hydrogenivirga sp. 128-5-R1-1] gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Hydrogenivirga sp. 128-5-R1-1] Length = 314 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 9/315 (2%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI- 245 +E SSH Q R+ G+ G FTNL +DH+DYH+ ++YF AK F+ +L K A+ Sbjct: 1 MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60 Query: 246 -IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I DD Y + + ++ N V+S G + + + + T+S +GK F+ Sbjct: 61 SINVDDFYGERLYRQLKNI-ANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYS 119 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G+F +YN A GID + E KL + GRFE V S+ + DYAH Sbjct: 120 KLRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRGRFEIV--YSKDFLVVNDYAH 177 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE ILK+I+ + GR+IVVFG GGDRD+ KRP MGKIA +LAD+ ++T DNPRSED Sbjct: 178 TPDALENILKSIQKLKRGRLIVVFGAGGDRDKTKRPKMGKIAEELADVIVLTSDNPRSED 237 Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+ I I G+ +E +R +AI+ AI+M + DV+++AGKGHET I+ + Sbjct: 238 PKDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKGHETYQIIGDNIYH 297 Query: 482 MSVDCDIIREILGLI 496 D D+ ++ L + Sbjct: 298 FD-DSDVAKKYLKMF 311 >gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcus albus 8] Length = 484 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 148/470 (31%), Positives = 225/470 (47%), Gaps = 45/470 (9%) Query: 29 KINEVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +I+ ++SD+R ++AG +FV I G DGH Q + +G +V L+ Sbjct: 25 EISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGCAVVVCERDLGLE------- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 +VV +TR + + +G HPE ++ VTGT+GK+++ + ++++ G Sbjct: 78 ---RQIVVSDTRAAFPMLCAAWFG-HPERELELIGVTGTNGKTTITTVIKKVLSGFGCKV 133 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + I TTP P L + ++ G + +E SS GL+Q R+ G Sbjct: 134 GLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAGCKYTVMEVSSQGLEQKRVQGCH 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTNL +DH+D H T + Y+ AK LF+ AII DD Y + + A Sbjct: 194 FKVGVFTNLTQDHLDVHGTMENYYQAKKMLFD----ISDSAIINIDDEYGR---RYAKEI 246 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYN 314 C S G A Q V + G + F F +PG F V N Sbjct: 247 PCPYKSYSVNGS--------ADFMAQDVMLGTAGVKYVFDDGRVKKNVSFNMPGLFNVSN 298 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L +G + EK+ V GR E V T R + DYAHT ++L +L Sbjct: 299 SLAVIACMEVLGYTPCQTIREFEKIQGVRGRAEIVPT-GRDFTVICDYAHTPDALINVLS 357 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I+ G++ +FGCGG+RD+ KR M A + AD IVT DNPR+EDP++I +++ Sbjct: 358 AIKEGAKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRNEDPDEIINDVME 417 Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 G+ G ++ +R EAI A++ K D++V+AGKGHE I+ G K Sbjct: 418 GLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKGHEDYQILAGGVK 467 >gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Delftia acidovorans SPH-1] gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans SPH-1] Length = 509 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 245/477 (51%), Gaps = 44/477 (9%) Query: 23 MQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +QW R + + +DSR ++ G F+A G DG + A+ +GA A +V + Sbjct: 17 VQWLAARLQGSGTLQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEA---- 72 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQ-- 134 Q A S I + + L A + + +HP ++LAVTGT+GK++ A ++ Sbjct: 73 QGVEAFGFSGEHIAALPGLKAATGLIADQWF-QHPSAQIDVLAVTGTNGKTTTAWWLAHA 131 Query: 135 ----QICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ +RSG + + +G I + +TTP P+ L +A + G+ ++ Sbjct: 132 LAQVKLQERSGCALVGTLGVG----IPPAMESTGMTTPDPVRLQRAFREYADAGLAACAI 187 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EASS G+ +HRLDG ++ FTN +DH+DYH + QAY++AK LF+ P A++ Sbjct: 188 EASSIGIVEHRLDGTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFD--WPGLQAAVVN 245 Query: 248 ADDAYSKEVM----KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDF 302 DDA+ + R A V S+ +G + K + T+ G Sbjct: 246 VDDAHGARLWATLQSRKQPAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRM 305 Query: 303 LFPLPGEFQVYNAL--VAAGLCIAIGIDSAL-VLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G++ V N L +AA C+ + +D A+ HLE VPGR + + + Sbjct: 306 HTRMVGQYNVSNLLGVLAALRCLGLTLDQAVAACVHLEP---VPGRMQQI-VQPGQPLVA 361 Query: 360 VDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L+ L+ +R GR+ VFGCGGDRD KRP+MG+ A AD +VT Sbjct: 362 VDYAHTPDALDKALRALRPAAEQRRGRLWCVFGCGGDRDATKRPLMGQAAQKNADCVLVT 421 Query: 417 DDNPRSEDPEKIRAEIIHGI-PG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPRSE P++I +I+ G+ PG + +R AI AI +++DV+++AGKGHE Sbjct: 422 SDNPRSEVPDRIIDQILAGMQPGENLQSQADRAAAIAQAIAHASERDVVLIAGKGHE 478 >gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium ammoniagenes DSM 20306] Length = 562 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 159/514 (30%), Positives = 249/514 (48%), Gaps = 79/514 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88 ++ ++ DSR +++ +F A+ G + G F Q A+A++ +A + + S T S Sbjct: 24 VDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQT---SAKAVLTDAAGVDILNGSDTAES 80 Query: 89 -NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + PI+VVD+ R L ++ +YG +N +L VTGTSGK++ ++ +G S+ Sbjct: 81 FDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTSGKTTTTYLLESGLLAAGYSTG 140 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T T I+ D +LTTP L + + + +GVTHV +E SSH LD R+ G+ Sbjct: 141 LIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVTHVVMEVSSHALDLGRVQGVDF 200 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--------------------------EELL 238 G FTNL +DH+D+H T + YF+AK +LF E + Sbjct: 201 AVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHAVVCINDDWGERLADQVDAEDI 260 Query: 239 P----KESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 P + AI++ D A + E+++ R + G + ++ +QQ Sbjct: 261 PLTVVSTTGAIVHTGDEGSVAEADEMLRE------RTRELLVPGTVVAWQQSVETTGEQQ 314 Query: 291 VTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 V + + + FDF PLPG+F + NA +A G+ A GID + L K Sbjct: 315 VALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMASAAGIDLDTFITALTK 374 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-------ITSGRIIVVFGCG 391 + VPGR + + + VDYAH ++E +L+ +R+ GR+ VV G G Sbjct: 375 V-AVPGRMQRI-DEGQDFVAVVDYAHKPAAIEAVLETLRSQLESAGNTAQGRLGVVVGAG 432 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------- 444 GDRD KR +MG A AD +VTDDNPR+EDP IR ++ G E+ N Sbjct: 433 GDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVMAGAREAAEESNRPVEIVE 492 Query: 445 ---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 R +AI + + D ++V GKGHE ++ Sbjct: 493 IASRADAIDAVVNWAHDGDAVIVVGKGHEVGQLI 526 >gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanobium sp. PCC 7001] gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Cyanobium sp. PCC 7001] Length = 500 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 241/478 (50%), Gaps = 32/478 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ +S DSR + G +FV + G + DG + A+ GA A VV +A + D +T Sbjct: 22 EATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSALKSGACAAVVGTAAAAADPPST- 80 Query: 87 RSNTPILVVDN-TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGL 142 P++VV+ ++ L A+ +G+ P LA+ G +G + + ++ + +G Sbjct: 81 --TDPVVVVEGPVARWAGLLAAAFWGE-PSQRLALIGVTGTNGKTTTTHLIEHLAATAGT 137 Query: 143 SSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G + +A + TT L L+ + G ++E SSH LDQ R+ G Sbjct: 138 PAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAGARIGAMEVSSHALDQQRVAG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESP-AIIYADDAYSKEVMK 258 + FTNL +DH+DYH + +AYF AK LF LL +P A++ DD + ++ Sbjct: 198 CRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLESATPNAVVNGDDPWGAQL-- 255 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQV 312 A G R + + HL+ I + + + V G+ F PL G F + Sbjct: 256 -ARQLGERCWTSSLEDPSAHLR----IDSLEMDSSGVRGRLVTPLGAGHFRSPLLGRFNL 310 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370 N L A G G+ ++LE L VPGR E V R + + VDYAHT + LE Sbjct: 311 MNLLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPAVLVDYAHTPDGLE 370 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R T GR+I VFGCGGDRD+GKRP MG IA LAD +VT DNPR+EDP++I Sbjct: 371 NALRASRPFTRGRLICVFGCGGDRDRGKRPQMGAIAARLADRVVVTSDNPRTEDPQRILD 430 Query: 431 EIIHGIPGFIEKGNRIE---AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ GIP E ++ AI AI D++++AGKGHE I+ G K+ D Sbjct: 431 DVVAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAGKGHEDYQIL--GTTKIHFD 486 >gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1] Length = 496 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 161/485 (33%), Positives = 245/485 (50%), Gaps = 42/485 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR+++ G +F+A+ G K DG + IA + AY Sbjct: 9 LFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 Q + ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 65 QGANVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L+ L G V++E SSH Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ ++ TNL RDH+DYH + +AY AK +LF P ++ DD + Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238 Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303 + + + R+LS + L + V + + ++ +G+ Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERI-LR 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G F + N + A + + +D AL +L+ +L GR + +G + + VD Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP +I +I PGF + R EAI I DV+V+AGKGHE + Sbjct: 415 TEDPLRIFDDI---RPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471 Query: 476 TNGEK 480 NGE+ Sbjct: 472 -NGER 475 >gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia K12] Length = 975 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 227/471 (48%), Gaps = 38/471 (8%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 ++DSR +Q G +FVA G D F+ A + A Q F T + IL Sbjct: 27 TADSRSLQPGEVFVAWPGAARDPRQFV-AQALAAGAAAALVEAEGAQYFGFT---DPRIL 82 Query: 94 VVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 VD + A+ YG HP + LAVTGT+GK+S A + Q +G IG Sbjct: 83 AVDGLKALAGPLAAAWYG-HPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTL 141 Query: 151 STISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 A Q TTP P+ L L+ L QG ++EASS GLD+HRL G + A +F Sbjct: 142 GAGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAF 201 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL +DH+DYH AY AK LF + P A++ DD Y+ V+ A CR S Sbjct: 202 TNLTQDHLDYHGDMAAYARAKRALF--VWPGLQHAVLDIDDPYAASVLL----ADCR--S 253 Query: 270 VGYQGKFIHL--------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G Q + L + V Q++T+ P+ G F + N LV A L Sbjct: 254 RGQQVQTTALIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAAL 313 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTIT 380 G+D A + L + VPGR + +G G + V DYAHT ++L L+ +R +T Sbjct: 314 LHTTGLDDAAIAAALRTVRAVPGRMQMLG--GIGAPLAVIDYAHTPDALYKALQALRPVT 371 Query: 381 S---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 + G++ VFG GGDRD KRP+M + A AD ++T DNPRSE P I +++ G+ Sbjct: 372 AKRKGKLWCVFGAGGDRDARKRPLMAQAAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQ 431 Query: 437 -PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 P IE +R AI + DV+++AGKGHE + ++ S Sbjct: 432 QPAQALLIE--DRAAAIAQTLSHAAVHDVVLIAGKGHENTQEIAGHKQAFS 480 Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 23/135 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + +DSR + G +FVA+ G + D H F+PQA A GA A++ + Sbjct: 520 VSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAAGARALLAEQGVAA--------CG 571 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + +T + L A + ++AVTG++GK++V + I L+++Q Sbjct: 572 LPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASI-----LAAWQ--- 623 Query: 150 TSTISSFAQDNRLTT 164 QD RL T Sbjct: 624 -------GQDRRLAT 631 >gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas putida KT2440] gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas putida KT2440] Length = 496 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 161/485 (33%), Positives = 244/485 (50%), Gaps = 42/485 (8%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR ++ G +F+A+ G K DG + IA + AY Sbjct: 9 LFAHASRDPLIRELTLDSRSVRPGDLFLAVPGAKVDGR----EHIADALARGAAAVAYEE 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ-- 135 Q + ++ P++ V LS A R YG+ N++ VTGT+GK+SV V Q Sbjct: 65 QGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQAL 124 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L+ L G V++E SSH Sbjct: 125 DLLGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSH 180 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ ++ TNL RDH+DYH + +AY AK +LF P ++ DD + Sbjct: 181 ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFA--WPSLRCQVVNLDDDF 238 Query: 253 SKEVM------KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFL 303 + + + R+LS + L + V + + ++ +G+ Sbjct: 239 GRRLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERI-LR 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G F + N + A + + +D AL +L+ +L GR + +G + + VD Sbjct: 298 SQLLGRFNLSN--MLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKP-LVVVD 354 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPR Sbjct: 355 YAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPR 414 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +EDP +I +I PGF + R EAI I DV+V+AGKGHE + Sbjct: 415 TEDPSRIFDDI---RPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI 471 Query: 476 TNGEK 480 NGE+ Sbjct: 472 -NGER 475 >gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 512 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 161/516 (31%), Positives = 256/516 (49%), Gaps = 49/516 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR A F+A+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGT 61 Query: 69 EAIVVSSAYSLQDFSAT---IRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGT 123 + +++S Q AT P I V+N ++ LS A Y K P+NI+ +TGT Sbjct: 62 K-LILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGT 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +GK+S++S++ Q+ + G S +G I Q++ TT + L + +SY + Sbjct: 121 NGKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYY--KNY 178 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++ +E SSH LDQ R +G+ F+NL DH+DYH+T YF AK +LF+ Sbjct: 179 QNLVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FRSLK 236 Query: 243 PAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A+I DD Y +++ + + + R S+ K+ ++ + ++ I +E K Sbjct: 237 KAVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKY-SIEIITVSLKSRRADIYIESK 295 Query: 299 D-------FDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEK 338 FD L GEF + N GL +A DS+ +LE++ K Sbjct: 296 SIENMQTSFDLYISQKYMGTYQTSLVGEFNLMNL----GLSLAALDDSSTREQLLENISK 351 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 L V GR E + G +I +DYAHT ++LE L+ + + +FGCGG+RD K Sbjct: 352 LKPVKGRMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTK 410 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAI 453 RPIM +IA + A ++T+DN R E E I +I G FI+ +R EAI+ I Sbjct: 411 RPIMAQIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFID--SREEAIKYTI 468 Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 E DV+++AGKGHE ++ NG K+ + D+I Sbjct: 469 ENSKANDVILLAGKGHE-CYLDKNGIKEYFDERDVI 503 >gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella piezotolerans WP3] gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans WP3] Length = 488 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 227/462 (49%), Gaps = 20/462 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 N+++ DSR ++AG +FVA+ G + DG +I A+ GA A++V + + + + Sbjct: 19 FNDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVLVHTDSPEEHGNISTDDG 78 Query: 90 TPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I R+ +S+ A++ Y K P+ I+ VTGT+GK+SV + Q+ Q + Sbjct: 79 LLISFFQLNRQ-VSVLAAQAYPLSSKRPK-IIGVTGTNGKTSVTQLIAQLQQLQSKQTAV 136 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G + D+ TT I L K L ++E SSHGL Q R++ + Sbjct: 137 MGTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVSSHGLVQGRVEAVPFD 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH T +AY AK RLF +I DDA + +A + Sbjct: 197 VAVFTNLSRDHLDYHHTMEAYGAAKQRLFT--FSSLRAGLINCDDAIGASWLAQATSTKT 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S+ K K C H+ T+ + PL G+F + N + A G Sbjct: 255 LGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPEGEAKLQSPLLGDFNLSNLVAALGALYL 314 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G D A ++ L V GR E T S + VDYAHT +++E L+ +R + Sbjct: 315 VGEDMAAIVRLASALTPVAGRMERF-TTSGNVTLVVDYAHTPDAIEQALQALRVHCKSEL 373 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441 +FGCGGDRD GKRP+M A AD +VT DN RSE+PE I A++ GF E Sbjct: 374 WCLFGCGGDRDSGKRPMMASSAEQFADHVMVTSDNARSENPEDIIADV---FSGFTEPQK 430 Query: 442 ---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + NR AIR + + D++++AGKGHET V NGEK Sbjct: 431 AQSQVNRKTAIREVVALAKPGDMVLLAGKGHETYQEV-NGEK 471 >gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 464 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 147/445 (33%), Positives = 227/445 (51%), Gaps = 34/445 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +++ Q G +F+A+ G G +I QAI +G AI+V S I P + + Sbjct: 25 NAQSTQPGDLFIALQGKLTHGADYINQAIDKGCVAILVDSK--------EIECVIPSIRI 76 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 DN ++L A+ Y + NI+++TGT+GK+SVA F+ Q+ + G+ + IG T I+ Sbjct: 77 DNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVAYFISQLLTKLGIKNGLIG-TLGIT 135 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 Q + TTP + L + L + H +E SSH L Q R+ G+ + FTNL + Sbjct: 136 HSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSSHALTQDRIAGLNIKQAIFTNLTQ 195 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+DYH T Y K +LF +L I+ DD++ K + + S+G Sbjct: 196 DHLDYHHTLDKYQATKEKLF--VLDTVESVILNQDDSHYKHFLNITKDKKRISYSLG--- 250 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 F +K + + V+ + F P GEF + N L A A+G ++ Sbjct: 251 DFDSIKTI-------EQGFLVQLDHYVFEIPFLGEFNLLNILAALNSVEALGFKRDDIIP 303 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGD 393 +L PGR + + ++DYAHT +++ + ++ + +I +VFGCGG+ Sbjct: 304 LFYQLLPPPGRMQRI----EPHLAWIDYAHTPDAIGNAITTLKKHYPNFKIRIVFGCGGN 359 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEA 448 RD+ KR MGKIA +LAD I+T+DNPRSE+P+ I I+ GI IE NR A Sbjct: 360 RDKDKRAEMGKIASNLADTIILTNDNPRSENPKTIIENILSGIDDSYKLDIIE--NRQLA 417 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVH 473 I TAI L + + L++AGKGHET+ Sbjct: 418 IETAITTLKENECLLIAGKGHETIQ 442 >gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Alteromonadales bacterium TW-7] Length = 492 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 234/465 (50%), Gaps = 28/465 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVAI G++ DG FI +AI +GA A++ A L +F S + +V Sbjct: 26 DSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGAVAVI---ADRLCEFDVAFES---LYLV 79 Query: 96 DNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 K L+ ASR Y K H +++ VTGT+GKS+ + + + Q S IG T+ Sbjct: 80 SELDKKLAELASRFYDKPSHNLDLIGVTGTNGKSTTTAMIAHLAQYCNTQSAIIG---TL 136 Query: 154 SSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 DN TTPS + L LS L V++E SSHGL QHR+ + A F Sbjct: 137 GFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAMEVSSHGLVQHRVAQCQFKAAVF 196 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGC-- 265 TNL RDH+DYH +Y +AK+ LF + P+ ++ DD + + +++ +N C Sbjct: 197 TNLSRDHLDYHGDMASYGDAKLMLFRDFDPQ--LVVLNQDDNQAGQWLEKYDFNNLICYG 254 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R ++++ V +S D PL GEF +YN A + + Sbjct: 255 RKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVKSPLFGEFNLYNLTAALATLLGL 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G ++ ++L V GR + + + VDYAHT +L + L+ ++ G + Sbjct: 315 GYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTCV-VDYAHTPEALALALQALQKHVPGGVS 373 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442 VFGCGGDRD+GKR +M + A A+ I+T DNPRSEDP I AE+ G+ + Sbjct: 374 CVFGCGGDRDKGKRVLMAQAAEKNANKVIITSDNPRSEDPNVIIAEVASGLAAPQSAHLE 433 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +R AI AI +V+++AGKGHE I+ G++++ CD Sbjct: 434 ADRASAISYAINNAASNEVVLIAGKGHEDYQII--GDERIDF-CD 475 >gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa Ann-1] Length = 496 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 162/471 (34%), Positives = 230/471 (48%), Gaps = 46/471 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSL 79 Q R+ I+ + DSR +Q G FVA+ G FI A A+GA AI+ S+ Sbjct: 16 QARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFEPPAPQGVSV 75 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI 136 D + + V R L A R +G HP ++ VTGT+GK+S + Q Sbjct: 76 PDGA---------IAVHGLRARLGAMADRFHG-HPSQAMTMVGVTGTNGKTSTVQLLAQA 125 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASS 191 R G+ S G T+ D +L TTP + L + L L G V++E SS Sbjct: 126 WHRLGVRSATCG---TLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 182 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H LDQ R+DG+ FTNL RDH+DYH + Y AK RLF A+I DD Sbjct: 183 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QGVQAAVINVDDL 240 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------- 304 + ++ H V VG V A Q ++++++G FD + Sbjct: 241 FGLRLL---HGLAKGVRRVGVSACGHTDADVMA----QHLSLNLQGIGFDLVIGADRAPV 293 Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G F V N L AG+ A+ + + L L + GR +G + VDY Sbjct: 294 RSPLMGRFNVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVVDY 353 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++L +L ++ + GR+I VFGCGG+RD+GKR M IA AD+ +VTDDNPR Sbjct: 354 AHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRG 413 Query: 423 EDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ED + I A+I+ G P ++ + +R AI AI + + DV+++AGKGHE Sbjct: 414 EDGDGIVADILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHE 464 >gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus erythropolis SK121] Length = 544 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 154/472 (32%), Positives = 246/472 (52%), Gaps = 28/472 (5%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKF 101 +F A+ G + G F A+ +GA AI+ A L+ A ++ + P+LV N R Sbjct: 67 LFAALPGARTHGAQFAVDALGRGATAILTDEA-GLELIEAADKAPDRSVPVLVHPNPRDV 125 Query: 102 LSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQ 158 L ++ +YG+ E ++ +TGTSGK++ + ++ +G +G T I Sbjct: 126 LGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRV 185 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 + LTTP L + ++ QG+ V +E SSH L R+DGI+ G+FTNL +DH+D Sbjct: 186 PSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIRFDIGAFTNLSQDHLD 245 Query: 219 YHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQ 273 +H+ + YF AK RLF+ E + A++ DD + + + + A +A V + + Sbjct: 246 FHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAE 305 Query: 274 GKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + +V ++ + +G+ + LPG + V NA +A + A G+D Sbjct: 306 AEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAA 365 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L + V PGR + + RG VDYAH +LE ++ +R GR+ VV G Sbjct: 366 VRALGTVDV-PGRVQRI---DRGQSFLAVVDYAHKPAALEAVIATLRNQVPGRVAVVVGA 421 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP----GFI-EK 442 GGDRD GKR +MG+ AD+ IVTDDNPR+EDP KIRA ++ G +P G + E Sbjct: 422 GGDRDAGKRALMGEAGARGADLLIVTDDNPRTEDPAKIRASVMQGAMDVPESERGEVREV 481 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 G+R AI A+ DV++VAGKGHE + +G K D +++ E++G Sbjct: 482 GDRAAAIEQAVRWAQPGDVVLVAGKGHEVGQEI-DGVKHPFDDREVLGEMIG 532 >gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas atlantica T6c] gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudoalteromonas atlantica T6c] Length = 530 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 240/481 (49%), Gaps = 31/481 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F +Q + I + DSR + F+A+ G+ DG FIPQAI+ GA+ I+ + Sbjct: 37 FGIQAGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAE 96 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC- 137 ++R + I+ + LS A+ YG ++I + VTGT+GK+S Q+ Sbjct: 97 HGHTSMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAA 156 Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + + + G + A N TTP I + K ++ + V V++E SS Sbjct: 157 LLNKRAASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSS 216 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H L Q R+ +K TNL RDH+DYH T QAY AK L ++ P+ A++ ++ Sbjct: 217 HALVQQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQ--PELRFAVLNGNEI 274 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DF 302 SK + + +A V+ G + + L + V S +G F D Sbjct: 275 ESKHWLAQLPSAVTPVI-YGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDI 333 Query: 303 LFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIY 359 L G F ++NAL +A+ LC+ ++ + +H L V GR E F G NS + Sbjct: 334 QLSLLGRFNIFNALAAIASQLCLGESLND--IAKHAHLLVPVTGRMERFGGDNSP--TVV 389 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L+ L +R + GR+ V+FGCGGDRD GKR +MG++A AD +T+DN Sbjct: 390 VDYAHTPDALKQALVALRQHSQGRLSVIFGCGGDRDTGKRSLMGEVAETYADDMTITNDN 449 Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 RSEDP I +I+ G P ++ +R AI A+ D+++VAGKGHE I+ Sbjct: 450 SRSEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKGHEDYQIIG 509 Query: 477 N 477 N Sbjct: 510 N 510 >gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Pseudoalteromonas sp. SM9913] Length = 492 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 160/473 (33%), Positives = 247/473 (52%), Gaps = 32/473 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +NE+ DSR ++ G +FVAI G++ DG FI +AI GA AI+ A L +F + Sbjct: 20 VNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAII---ADRLCEFESDFE-- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+ +V K L + AS+ Y + + +++ VTGT+GKS+ + + + Q + I Sbjct: 75 -PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTTTAMIAHLAQFCHTQAAII 133 Query: 148 GPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ DN + TTPS + L + LS L ++ V++E SSHGL QHR+D Sbjct: 134 G---TLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAMEVSSHGLVQHRVDQCY 190 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHN 262 A FTNL RDH+DYH Q+Y +AK+ LF + I+ DD +++ + K + N Sbjct: 191 FKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDF--DADHVILNQDDGQAEQWIEKYSFN 248 Query: 263 A----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G + L+ +F++ V ++ D PL GEF +YN A Sbjct: 249 SLICYGRKNLAPK-NAQFVYFSDVQYSATGISAQLTTSWGDVAIKSPLFGEFNLYNLTAA 307 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A+G ++ E L V GR + S + VDYAHT ++L + L+ ++ Sbjct: 308 LATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTCV-VDYAHTPDALALALQALQQ 366 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437 G + VFGCGGDRD+GKR +M + A AD I+T DNPRSEDP I ++ G+ Sbjct: 367 HVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFADKVIITSDNPRSEDPNDIINDVAAGLEH 426 Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 +E +R AI+ AI+ +V+++AGKGHE I+ G+ ++ CD Sbjct: 427 PENAHLE-ADRGAAIQFAIDNAKAGEVILIAGKGHEDYQII--GDTRIDF-CD 475 >gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus fermentans DSM 20731] Length = 497 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 161/487 (33%), Positives = 247/487 (50%), Gaps = 32/487 (6%) Query: 9 KDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 ++ ++I QL ++ +R +++++ DSR G +F+ I G DGH ++ +A AQ Sbjct: 3 RNLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQ 62 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTS 124 GA A + + D IR V +T++ + A Y ++ VTGT+ Sbjct: 63 GAVAALTEQETEVPDGMTVIR-------VPSTQEAVKTLAPWFYDWPARKMRMIGVTGTN 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ + R+G IG + I + + TTP + L K L + Sbjct: 116 GKTTTTNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHCD 175 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E SSH L R+ GI+ TN+ +DH+D+H+T + Y AK LF L P Sbjct: 176 TCVMEVSSHALALDRVAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKP 235 Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVE 296 A+ +DD S +M R ++++ G +GK + V A H ++ + Sbjct: 236 NKTAVFNSDDPSSAIIMPRVK---TKIMTYG-KGKDNDVYPLTFHVAASH--MELNLQTP 289 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + D + GEF VYN + + IA G+ ++ L+ VPGRF+ + + Sbjct: 290 VGEMDLKLHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHA-GQPF 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAHT + LE +LK R IT G++ VVFG GGDRD+ KRPIMGKIALDLADIA+VT Sbjct: 349 TVVVDYAHTPDGLENVLKTARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVT 408 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPRSEDPE I +I G+ E +R EAI + DV+++AGKGHE Sbjct: 409 SDNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHE 468 Query: 471 TVHIVTN 477 I+ + Sbjct: 469 NYQILKD 475 >gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM 12042] Length = 491 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 160/486 (32%), Positives = 233/486 (47%), Gaps = 46/486 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + IF I G DGH ++ AI GA +V S + + Sbjct: 14 EIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDIKRNN------A 67 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 N + V + L+ A+ YG +P + VTGT+GKSS+A ++ + + Sbjct: 68 NVVYIKVRDVTAALNQVAACFYG-YPSKKMVVYGVTGTNGKSSIACMIRNLLN----PVY 122 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G TIS D +L TTP + L + L ++ G+ ++E SS GL+QHR D Sbjct: 123 ACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEISSIGLEQHRTDS 182 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + FTNL DH+DYH T + YF AK RLF++L P + AI DD + M Sbjct: 183 VDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKP-DGTAITNKDDPHG---MAIVA 238 Query: 262 NAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + RV++ G Y+ K I L +K T+ +G ++ L F +YN Sbjct: 239 DCPARVVTYGVLEKADYEAKDIQLNA-----DKTIFTLVHDGSEYPVQTNLVAMFNLYNL 293 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L G+ +LE L + + GR E + + I VD+AHT + LE I K Sbjct: 294 LAVIAALHEGGLPIEQILEQLNTIPQIEGRMERI-EEGQPFNIIVDFAHTPDGLEQIFKF 352 Query: 376 IRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 IT RII VFG G RD KRP+ G++A D+ I+T+D+PR EDP +I EI Sbjct: 353 ASAITPKEKRIISVFGSAGKRDTKKRPVFGQLADKYCDLIILTEDDPRDEDPIQIAEEIA 412 Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G I+K NRI +AIR A+E+ N D +++ GKG ET G + D Sbjct: 413 AG----IQKTNRIIIESRYDAIRQAVEVANVGDTILILGKGDETFIYREFGREPWMSDPA 468 Query: 488 IIREIL 493 +R+ L Sbjct: 469 AVRDAL 474 >gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylococcus capsulatus str. Bath] Length = 479 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 234/467 (50%), Gaps = 41/467 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR ++ G F A+ G++E G + +A+ +GA +V S+ A +R+ P Sbjct: 9 LSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSS------GAGVRAPEPG 62 Query: 93 L----VVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L V + + L A+R +G HP +++AVTGT+GK+S F+ + Q Sbjct: 63 LGFAVPVRDLGRHLGSIAARFFG-HPSETLDVIAVTGTNGKTSCTHFIAEALQPDH---- 117 Query: 146 QIGPTSTISSFAQD-----NRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 PT+ I + R+ TTP I + L+ L +QG ++EASSHG Q R Sbjct: 118 ---PTAVIGTLGWGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGR 174 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G+ +T + RDH++YH T ++Y AK+ L P + DD S + + Sbjct: 175 INGVHCRGALYTRITRDHLNYHGTFESYLAAKLGLLAN--PALEFVAVTLDDP-SVDAIL 231 Query: 259 RAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQV 312 R+ AG +V+ G F L+ ++ + + V+ G+ + P+ G+F Sbjct: 232 RSVPAGVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNA 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L + + +G + + ++ VPGR E N G + VDYAHT ++L + Sbjct: 292 ENLLGTLAVLVGLGYPAEAAASRVGRVRPVPGRMERFREN--GLTVIVDYAHTPDALRNV 349 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L ++R R+ VVFGCGGDRD+GKRP MG IA +AD IVTDDNPRSE + I +I Sbjct: 350 LTSLRRHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDI 409 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G +R AIR AI D+++VAGKGHE V Sbjct: 410 LAGCGETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVAG 456 >gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium DSM 4810] Length = 525 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 164/471 (34%), Positives = 238/471 (50%), Gaps = 58/471 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE----AIVVSSAYSLQDFSATIR- 87 VS DSR ++ G ++ A+ P A A GAE A +A +L D + R Sbjct: 43 VSLDSRSVEPGDLWCAL-----------PGATAHGAEFAAQAAGRGAAMALTDPAGRERC 91 Query: 88 --SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 + P LVVD+ R +L A+ ++G+ E + + VTGT+GK+SV + + + G+ Sbjct: 92 EAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVTTAITRALLELGVP 151 Query: 144 SFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + IG TS S A D TTP L L+ ++ GV VS+E SSH L Sbjct: 152 AGAIG-TSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVEVVSMEVSSHALVL 210 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR D + FTNL +DH+D+H T +AY+ AK LF + ++ DD + + + Sbjct: 211 HRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHARRG--VVCVDDDWGRRL 268 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLF--PLP 307 + A ++ Y + + A H ++ + V+G D LP Sbjct: 269 AREA-----QIPVTTYATR----PGIDADHRAREHRADGYGSIVEVDGPDGTRTLHAALP 319 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTS 366 G V N L A L AIG V++ L + VPGR E V T RG VDY+HT Sbjct: 320 GRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRG---VVDYSHTP 376 Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE L +R + +GR++VV G GGDRD+ KRP+MG++A AD+ +VTDDNPR+EDP Sbjct: 377 DALEQALLTLRAVPGTGRLLVVMGAGGDRDRAKRPLMGEVAARYADVVLVTDDNPRTEDP 436 Query: 426 EKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IRAE++ GIP + R EAI A + + D ++VAGKG ET Sbjct: 437 AAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGKGAET 487 >gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus fusiformis ZC1] Length = 490 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 162/493 (32%), Positives = 241/493 (48%), Gaps = 43/493 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L+ KD+P + SI +I V ++ +Q G IF+ G K G F+ Sbjct: 1 MQLAELL-KDWPCSVTGGSI------RTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+A+GA AIV + SL I P + V NT FLS +++L E ++ Sbjct: 54 KEALARGAAAIVSEESISL----PIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVI 109 Query: 119 AVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 A+TGT+GK++V+ FV Q+ G F I +++ Q LTT L Sbjct: 110 AITGTNGKTTVSHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQ---LTTLQAKELH 166 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L +GVTHV +EASS GL QHRLD + G F NL DH++ H +AY AK Sbjct: 167 PILKQCVQKGVTHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKK 226 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290 RL + L K+ ++ DD + + V C S G+ +H++ V K Sbjct: 227 RLAD--LSKK--LVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSESVGKTV 279 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + + P G++ V NA+ + +G+ ++ H+ L + GR E + Sbjct: 280 LCLQTSASEHIVEIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKI- 338 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 N G +YVDYAHT+ +L+ +L+ S I +VF CGG+RD+ KR MG +A A Sbjct: 339 ENPLGIDVYVDYAHTAEALQAVLQTFD--HSKTIYLVFSCGGNRDKAKRFAMGAVASKYA 396 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464 D+ +T DNPR EDP I I I GF E+ +R AI A+ K D+++V Sbjct: 397 DVIYLTTDNPRDEDPIVINESI---IAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLV 453 Query: 465 AGKGHETVHIVTN 477 AGKGHE + N Sbjct: 454 AGKGHEQTQQIKN 466 >gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 495 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 218/454 (48%), Gaps = 17/454 (3%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ ++ + DSR ++ G FVAI G G F QA GA AI+ + + Sbjct: 18 RDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPA 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P L R L A +G H ++ VTGT+GK+S + Q GL Sbjct: 78 DAIAVPGL-----RSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLR 132 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG + + TTP + + L L G V++E SSH LDQ R+DG+ Sbjct: 133 GGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGV 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL RDH+DYH +Y AK RLF L A++ DD + + + R Sbjct: 193 HYDVAVFTNLTRDHLDYHGDMASYGEAKARLF--LREGLRSAVLNLDDEFGRVLAGRLAE 250 Query: 263 AGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G R++ V G +G + + + +S + PL G F V N L Sbjct: 251 -GVRLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVG 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ A+G A V L +L V GR +G + + VDYAHT ++LE L ++R Sbjct: 310 GVLHALGDSVACVAAILSRLQPVAGRMNRLGGDGERPLVVVDYAHTPDALEQALASLRAH 369 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437 R+ VFGCGG+RD+GKRP+M +IA AD +VTDDNPR ED + I A I+ G P Sbjct: 370 AGARLTCVFGCGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGFAAP 429 Query: 438 GFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ + +R AI AI QDV++VAGKGHE Sbjct: 430 EAVQVERDRALAIARAIARSGAQDVVLVAGKGHE 463 >gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitrosomonas eutropha C91] Length = 520 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 52/512 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+++LS+ KI +++DSR ++ G F+A G + D IPQAIA G A++ Sbjct: 17 LLDRLSV--------KIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVI- 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA 130 + Q FS P L + R AS++Y HP ++ +TGT+GK++ + Sbjct: 68 ---WEKQGFSWKPEWKIPNLGISGLRHEAGKIASQVY-DHPSRHLRLVGITGTNGKTTCS 123 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q G + IG A ++ TTP +YL + ++ G + +EA Sbjct: 124 HWYAQTMMTLGEKTAIIGTLGHGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEA 183 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q RL G + TNL RDH+DYH + AY AK +LF A++ D Sbjct: 184 SSHGLSQDRLAGSEFSIAVLTNLTRDHLDYHGSMDAYAAAKAKLF--FWEGLQHAVLNLD 241 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHN----KQQVTISVE--GK 298 + E+ ++ ++ G++ + +K+ N Q ++ VE + Sbjct: 242 EVLGVELSQQLAWKDVSIIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNR 301 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357 + G + YN L +A +D + L+++ +PGR E +G GG Sbjct: 302 RASLQCNVTGRYNAYNLLAVLATLLASNVDLDDAITALQQVQPIPGRMEKLG----GGDQ 357 Query: 358 --IYVDYAHTSNSLEMILKNIRTITSG------------RIIVVFGCGGDRDQGKRPIMG 403 + VDYAHT ++L +L +R +G +++ V GCGGDRD+GKRP++G Sbjct: 358 PIVIVDYAHTPDALNEVLTGLRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIG 417 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDV 461 +IA LAD I+T DNPR+E+P I EI+ G G + +R AI AI K D+ Sbjct: 418 EIASHLADEVIITSDNPRNENPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDI 477 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKG ET H G+K D +++R++L Sbjct: 478 VLIAGKGAET-HQEIQGKKYPFDDREVVRQVL 508 >gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena DSM 20109] Length = 520 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 147/465 (31%), Positives = 224/465 (48%), Gaps = 43/465 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ S ++ G +FVA+ G K G F A+A+GA A++ D A + + P+ Sbjct: 42 VTMSSTDVEPGDLFVAVPGLKVHGARFAADAVARGAVAVLTD-----DDGVAAVPPDVPV 96 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150 LV + R AS G ++ V T + FV + + +G Sbjct: 97 LVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGKTTTTYFVDAALRAHHARTAVLGTV 156 Query: 151 S-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 I A ++ TT L L+ +G ++ E SSH L R+ G + F Sbjct: 157 ELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTTEVSSHALALGRVLGTRFDVVGF 216 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+D+H + YF K RLF P+++ ++ DDA+ + + + A Sbjct: 217 TNLQRDHLDFHGDMEGYFRDKARLFA---PEQARRGVVVVDDAWGRRLAEEA-------- 265 Query: 269 SVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLF------------PLPGEFQVY 313 ++ + H+ + A + + ++G F+ PLPG V Sbjct: 266 AIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGARHVAHSPLPGLVNVS 325 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI 372 NA +A L A G+ A +E + H +PGR E V G + VDYAHT ++L + Sbjct: 326 NAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLCLVDYAHTPDALVLA 385 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R IT GR+++VFG GDRD+GKRPIMG+IA LAD+ +VTD+NPRSEDP +RA I Sbjct: 386 LEAVRPITPGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDENPRSEDPASVRAAI 445 Query: 433 IHGI----PGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + G+ P E +R +AIR A+ + D ++V GKGHE Sbjct: 446 LAGVRDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHE 490 >gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM 16069] Length = 533 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 169/510 (33%), Positives = 250/510 (49%), Gaps = 76/510 (14%) Query: 25 WRER---KINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI------- 71 W++ + EVS DSR I+ G +FVA G+ DG +I QA+ GA + Sbjct: 24 WKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVDGGATVVLFEQNDS 83 Query: 72 -------------VVSSAYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE 115 V +SA +L + N ++ V N +S A+R YG +P Sbjct: 84 ETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQVSHIAARFYG-NPT 142 Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-------RLTTP 165 N ++ VTGT+GK+S A + Q + F PT +S+ N TTP Sbjct: 143 NKMSVVGVTGTNGKTSCAYLMAQALE------FLQYPTLMLSTIGNGNPSKLQATENTTP 196 Query: 166 SPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 I + + A YL+ + H+++E SSHGL Q R+ ++ FTNL +DH+DYH + Sbjct: 197 DAIAIQRLAAEYLARKNY-HMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDYHSDME 255 Query: 225 AYFNAKMRLF--EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 +YF AK +LF EEL A+I ADD Y + ++ CR ++ + K L Sbjct: 256 SYFQAKRQLFIREEL----EAAVINADDEYGRRLLTD-DAVACRKIAFSCEQKNEDLNIE 310 Query: 283 CAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL-VAAGLCIAIG-IDSAL 331 I K +T ++ G + P L G F + N L VAA L G ID + Sbjct: 311 NWIVAKN-LTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDIDKWI 369 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 V L VPGR + +S+ + VDYAHT ++L+ L ++R +G + +FGCG Sbjct: 370 VA--LNAAKAVPGRMQNFTASSKA-TVVVDYAHTPDALDKTLTSLREHCAGELWCIFGCG 426 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIE 447 GDRD KRP+MG +A A+ I+TDDNPR+E E+I + I G+ +I+K R E Sbjct: 427 GDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYIQK--RKE 484 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AI A++ D+++VAGKGHE + N Sbjct: 485 AIEFALKHSTPNDIILVAGKGHEDYQQIGN 514 >gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 525 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 233/476 (48%), Gaps = 37/476 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQ 80 + R + V+SDSR + G +F A G K G F A+ GA A++ + + Sbjct: 33 EARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFAASAVEAGANAVLTDAQGRDILRR 92 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 D + P+LVVD+ R + A+ + G+ ++ AVTGT+GK++ A V+ I Sbjct: 93 DLGG---RSVPVLVVDDPRAAVGKAAALILGEPAADLDSYAVTGTNGKTTTAYMVESILG 149 Query: 139 RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G IG ++ + LTTP P L L++ G T V +E SSH L Q Sbjct: 150 ALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFHRRGGGTDVVMETSSHALVQG 209 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--- 254 R D ++ FTNL +DH+D+H T + Y+ AK LF + A++ D Y + Sbjct: 210 RSDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPERARN--AVVSVDGEYGRRLL 267 Query: 255 ---------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 EV A ++G L G G K A+ V S +G+ Sbjct: 268 AECAPRLEGEVAALAVDSGLPDLPDGVVGW-----KALAMEGSSFVLESTDGRRLATSTS 322 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYA 363 LPG+F V NA +AA + + G + L VPGR E + N+R R+ VD+A Sbjct: 323 LPGDFNVANAALAAVMVMTAGYSPDELARALPAGINPAVPGRMEVL--NARP-RVIVDFA 379 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 H + +L +K +R T GR++V+ G GDRD+GKRP MG D +TDD+P +E Sbjct: 380 HNTEALVNAMKALRPSTEGRLVVLTGSAGDRDKGKRPAMGAAVARYGDFVYITDDDPHNE 439 Query: 424 DPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DP IRA +I G GF +E +R +AI AI +++D +++AG+GHET+ V Sbjct: 440 DPAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAEASERDTILLAGRGHETIQEV 495 >gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter thermophilus DSM 20745] Length = 513 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 236/483 (48%), Gaps = 52/483 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +V DSR + G +FVA+ G DGH F+ A A+GA A +V S + + + Sbjct: 26 VTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAVAALVES------WEPDLANY 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V NTR L L A+ +G+ E I+ +TGT GK++ + V + + +G + I Sbjct: 80 PAYAAVPNTRAALPLVAATFFGRPAEALGIIGITGTDGKTTTSYLVDAMLRSAGYRTGLI 139 Query: 148 GPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + D R TTP + + + L+ + V +EA+SHGL HRLD Sbjct: 140 GTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLEATSHGLALHRLDECAF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPA--IIYADDAYSKEVMKR 259 G TN+ +H+++H T + Y AK RL E + P+ P ++ DD ++ + + Sbjct: 200 DVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYPGGVVLNRDDEGARAIAEA 259 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310 A A VL +G L+ V ++ +G F P L G + Sbjct: 260 AGTA--PVLWFSAKGAPADLQA-------DDVQLAADGTSFRLTTPRGSVPVRLNLIGAY 310 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSN 367 V NAL AAG+ +G+ + LE L VPGR V G+ Y VDYAHT + Sbjct: 311 NVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDL----GQPYTVIVDYAHTPD 366 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE L+ +R++ GR+I VFG G+RD+ KRP+ G ++ LAD ++ T ++PR EDP+ Sbjct: 367 SLEKSLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFSVFTSEDPRFEDPDA 426 Query: 428 IR---------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I A + G ++ +R AIR A++ D +++AGKGHE I+ Sbjct: 427 IIAEIAAGARDAGAVEGR-DYVCIEDRRAAIRAALDWARPGDGVLLAGKGHERC-IIYGA 484 Query: 479 EKK 481 E++ Sbjct: 485 ERR 487 >gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 461 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 160/443 (36%), Positives = 230/443 (51%), Gaps = 27/443 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A FTNL RDH+DYH Y AK L+ AI+ ADD EV +R + Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASL 253 Query: 265 CRVLSVGYQGKF---IH---LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316 ++V +G H LK ++ + VTI + + L G F V N L Sbjct: 254 PDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLL 313 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A +A+G +L+ +L V GR E V T + VDYAHT ++LE L+ Sbjct: 314 LALATLLALGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAA 372 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P I +I + Sbjct: 373 RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDI---L 429 Query: 437 PGFIEKGN------RIEAIRTAI 453 G ++ G R EA+ AI Sbjct: 430 AGMLDAGQVRVMEGRAEAVTNAI 452 >gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila DSM 44928] Length = 532 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 233/463 (50%), Gaps = 33/463 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRS 88 + +S DS+ I+ G +++A G G F P A+A GA A+V +A ++ D A Sbjct: 41 VTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAV--- 97 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSF 145 P+LV ++ R ++ +YG+ P LA VTGT+GK++ + + +R+GL + Sbjct: 98 --PVLVAEDVRGLAGRLSAFVYGE-PATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTG 154 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T+ D + TTP L L+ + V +++E SSH L R G Sbjct: 155 VIG---TVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAG 211 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I+ A +F NL +DH+D+H + YF AK +LF + A++ DD + + V++R Sbjct: 212 IRFKAAAFLNLTQDHLDFHADFEDYFEAKAKLFTPGYTER--AVVDVDDEHGRRVVERCR 269 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVA 318 G +V + +G + + T +V G D LPG+F V NAL A Sbjct: 270 ANGVQVHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAA 329 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 L GID + + +H VPGR E + + VDYAHT +++ L +R Sbjct: 330 IVLLAVTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRP 389 Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + GR+ VV GCGGDRD+ KRP+MG A+ LAD A+ TDDNPR+E I A + G Sbjct: 390 VAERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAG 449 Query: 436 IPGFI---EK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + EK +R EAIR A+ DVL+VAGKGHE Sbjct: 450 ADAELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKGHE 492 >gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 487 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 158/496 (31%), Positives = 254/496 (51%), Gaps = 34/496 (6%) Query: 14 LINQLSIFPMQWRERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 L + + Q ER + V ++DSR ++ G +FVAI G DGH + QA AQGA Sbjct: 3 LAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQGAV 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 AIV S + TI P+++V +T + ++ A + Y E + + +TGT+GK+ Sbjct: 63 AIV-----SERLLDVTI----PVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + V+ + + G + IG I +R TTP L + +GV V Sbjct: 114 TTTTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDVI 173 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP 243 +E SSHGL+ R+ G FTNL DH+D+H+T + Y AK LF +L L + Sbjct: 174 MEVSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKV 233 Query: 244 AIIYADDAYSK--EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ ADD S E+M G RVL+ G Q + K + + T+ + + Sbjct: 234 AVLNADDEISHLFEMM-----TGARVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAV 288 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + G F VYN L+A G+ ++IG + + ++ GR + + + G IYV Sbjct: 289 ELTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPID--GYNIYV 346 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + +E LK + + II + G GG+RD KRP+MG++A A ++T D+P Sbjct: 347 DYAHTPDGIEQCLKALVDVPKENIIFLIGTGGNRDVTKRPMMGQLASTYAGTVVITTDDP 406 Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 R E E I + I G+ F+E G+R EA+R A + +++++AGKGHE I+ G Sbjct: 407 RFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKGHEKYQII--G 464 Query: 479 EKKMSVDCD-IIREIL 493 ++K +D + +++E++ Sbjct: 465 DEKTPLDEEALVKEMI 480 >gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate ligase mure [Rhodococcus equi 103S] gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 547 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 232/467 (49%), Gaps = 29/467 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V ++ ++ G +F A+ G G F+ AIA GA A++ A + T S Sbjct: 51 EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVGVAIAAGASAVLTDDAGVAMLAAGTEES 110 Query: 89 --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+LV + R+ L ++ +YG HP + + G +G S + + + Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYG-HPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHT 169 Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TI + +R LTTP L + + +G+ V +E SSH L R+DG+ Sbjct: 170 IGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGV 229 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYS---KEVMK 258 + G+FTNL +DH+D+H+ YFNAK RLF + A+I DD + E+ + Sbjct: 230 RFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIAR 289 Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314 AH A +S + + Q T++ +G LPG + V N Sbjct: 290 HAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVAN 349 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372 A +AA +C + G D L + + V PGR E V RG VDYAH +LE + Sbjct: 350 AALAAAICCSAGADVDAALAGIANVDV-PGRVERV---ERGQDFLAVVDYAHKPAALEAV 405 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + +R T GRI VV G GGDRD+GKRP+MG+ AD+ +VTDDNPR+EDP IRA++ Sbjct: 406 IATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQM 465 Query: 433 IHG---IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +P E G+R EAI A+ DV++VAGKGHE+ Sbjct: 466 LAGAVAVPDAERGAVREIGDRAEAIAAAVRWARTGDVVLVAGKGHES 512 >gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phymatum STM815] gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum STM815] Length = 512 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 227/472 (48%), Gaps = 29/472 (6%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR I G +F+A + D FI AI +GA A++V + D + P L Sbjct: 33 ADSRKIAPGDVFLAYAVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALMVAVPRL- 91 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151 + AS YG + ++ VTGT+GK+S +++ G IG S Sbjct: 92 ----NELTGTIASAWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS 147 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L ++L L + G V++E SSH L Q R++G G FTN Sbjct: 148 GMPGQLVHTGFTTPDAPQLQRSLEQLRAAGAKAVAMEVSSHALHQGRVNGTAFSVGVFTN 207 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH T AY AK RLF P+ A+I ADD + ++ + N + ++ Sbjct: 208 LTQDHLDYHGTFAAYEAAKARLFS--WPELKAAVINADDEAGRRMIA-STNGHAKTIAYS 264 Query: 272 YQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 Q + I V A I+ + + D G F V N L G +A Sbjct: 265 LQPRADVQADASIVASNVRATTTGTAFHIASDWGNSDIEVNTLGAFNVSNLLGVLGALLA 324 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTIT-- 380 + + + KL V GR E +G + + +DYAHT ++LE L +R I Sbjct: 325 SDVPFDAAVAQIAKLESVNGRMERLGGRVQNDEPLVVIDYAHTPDALEQTLTALRPIADA 384 Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 G++I +FGCGGDRD KRP+MG+IA AD +VT DNPRSEDP KI +I G+ Sbjct: 385 RGGKLICMFGCGGDRDATKRPLMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAAGMKD- 443 Query: 440 IEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 K RIE AI A+ ++DV+V+AGKGHE+ + G+K+ D D Sbjct: 444 ASKARRIEDRASAILQAVRCAAREDVVVLAGKGHESTQEIM-GKKRAFSDQD 494 >gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 545 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 232/468 (49%), Gaps = 27/468 (5%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W I+ V ++R + G +F A+ G + G F ++ A+ +++ L D Sbjct: 38 WAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQFAAESPARA----ILTDREGL-DIVE 92 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141 P+LVVD+ R L ++ +YG HP ++ VTGTSGK++ +++ +G Sbjct: 93 AAGDRRPVLVVDDVRAVLGEVSAHVYG-HPSRRMTLIGVTGTSGKTTTTYLLERGLIAAG 151 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T T I LTTP L + ++++GVTHV +E SSH L R+D Sbjct: 152 AQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTHVVMEVSSHALSLGRVD 211 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKR 259 G A FTNL +DH+D+H T YF AK F+ P S +++ DD + + + + Sbjct: 212 GTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAASASVVCVDDEWGERMAEL 271 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + RV + G +G + N Q + + ++G+ +F PLPG F V NA +A Sbjct: 272 ASHP-LRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQTHEFTLPLPGAFNVANAALA 330 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKN 375 L +G D + LE VPGR E + G+ +V DYAH ++ +L+ Sbjct: 331 TALARVVGADMPQFVRGLENA-AVPGRMERIDA----GQDFVAVVDYAHKPAAIAAVLET 385 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R GRI + G GGDRD KR +MG+ A AD+ IVTDDNPR+EDP IRA ++ G Sbjct: 386 LREQVDGRIGIAVGAGGDRDTTKRAVMGQQAATRADLVIVTDDNPRTEDPAAIRAAVLRG 445 Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E G R EAI + D +VV GKGHE IV + Sbjct: 446 AREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVGKGHEVGQIVGD 493 >gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharopolyspora erythraea NRRL 2338] Length = 486 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 151/448 (33%), Positives = 224/448 (50%), Gaps = 25/448 (5%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVV 95 ++ G +F A+ G + G F A+ GA A++ A L D +LV Sbjct: 1 MRPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVH 60 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 D+ R L A+++YG+ + IL VTGTSGK++ ++ +G ++ +G T Sbjct: 61 DDPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETR 120 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 I+ D+ TTP L L+ + GVTHV +E SSH L R+ G + G FTNL Sbjct: 121 IAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNL 180 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +DH+D+H+ YF AK LF+ E ++ D + ++++K G +S Sbjct: 181 SQDHLDFHRDLDDYFQAKALLFDGRSEHE---VVCTDTDWGRKLVK----PGTITVSTTG 233 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + +Q+ T G LPG F + NAL+A G+ A + + Sbjct: 234 DASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWA 293 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + L ++ V PGR E V + VDY+H ++ +L R GR+IVV GCG Sbjct: 294 IERGLAEVDV-PGRMERVALGQDFTAV-VDYSHKPGAVSAVLDAARAQAEGRVIVVLGCG 351 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG-----FIEKG 443 GDRD KRP+MG+ A + + IVTDDNPRSEDP IRA ++ G +P IE+G Sbjct: 352 GDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERG 411 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +R EAI A+ + D++VVAGKGHET Sbjct: 412 DRREAIAEAVARASSGDIVVVAGKGHET 439 >gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella pealeana ATCC 700345] gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC 700345] Length = 488 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 234/463 (50%), Gaps = 17/463 (3%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 E++ DSR +QAG++FVAI G + DG FI A +GA A +V + + + Sbjct: 21 EITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQ 80 Query: 92 ILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 IL R+ +S A++ Y + I+ VTGT+GK+SV + Q+ + +G Sbjct: 81 ILFFQLNRQ-ISALAAQAYPLSQSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGT 139 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + D+ TT PI L K L + +G ++E SSHGL Q R++ + Sbjct: 140 LGNGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAV 199 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+D+H T + Y AK RLF+ +I DD +E + A A ++L Sbjct: 200 FTNLSRDHLDFHHTMEEYGIAKKRLFQ--FANLRGGLINIDDVVGREWL--ADLASDKLL 255 Query: 269 SVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +G I+ K T+ + PL G+F + N + A G + Sbjct: 256 GFSVKGDSTADIYTKDNHFHDGGVSCTLVWPTGEAQLNSPLLGDFNLSNLVAALGALYLL 315 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G D ++ KL V GR E T+ G + VDYAHT +++E LK +R G++ Sbjct: 316 GEDMHTLVALAPKLEPVAGRMERF-TSKDGVTLVVDYAHTPDAIEQALKALRVHCKGQLW 374 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445 +FGCGGDRD+GKRP+M A AD +VT DN RSEDP I ++I+ G+ + ++ Sbjct: 375 CLFGCGGDRDKGKRPMMAASAEQFADRVMVTSDNCRSEDPNAIISDILAGLQHPQQALSQ 434 Query: 446 IE---AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +E AI+ + D++++AGKGHET V NG KK++ D Sbjct: 435 VERQVAIKEIVAQAASGDMVLLAGKGHETYQEV-NG-KKLNYD 475 >gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oscillatoria sp. PCC 6506] gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oscillatoria sp. PCC 6506] Length = 516 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 180/327 (55%), Gaps = 7/327 (2%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TTP + L K L+ G +E SSH L Q R+ G FTNL +DH+DYH+ Sbjct: 179 TTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYHRD 238 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + YFNAK LF K AI+ ADDAY + ++ ++ S + + Sbjct: 239 MEDYFNAKALLFSSNYLKGR-AIVNADDAYGRRIIDSLNSEQVWSYSTNDSKADLWASDL 297 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 N + + + DF PL G++ + N L A G + +G++ + ++ +L + V Sbjct: 298 KYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFPGV 357 Query: 343 PGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 PGR E V + + + VDYAHT +SLE +LK R GR+I VFGCGGDRD+ KRP Sbjct: 358 PGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPK 417 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNK 458 MGKI +LAD+ +VT DNPR+EDPE+I +++ GI ++ G+R +AIRTAI Sbjct: 418 MGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQAIRTAILEAKP 477 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485 D +++AGKGHE I+ G +K+ D Sbjct: 478 GDGVLIAGKGHEDYQIL--GTEKIHFD 502 >gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus denitrificans BC] gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Alicycliphilus denitrificans K601] Length = 501 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 234/473 (49%), Gaps = 46/473 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R + +DSR + G F+A G DG + A+A+GA A +V +D Sbjct: 18 RARVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQ----EDVEPF 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143 + I + + L A++ +G+ E +LAVTGT+GK+S A ++ +GLS Sbjct: 74 GLAGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADAL--NGLS 131 Query: 144 --------------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + IG +SS +TTP P+ L +A + + +G+ ++EA Sbjct: 132 KKELPALAGCALVGTLGIGVPPGLSS----TGMTTPDPVRLQRAFAQFAQEGLGACAIEA 187 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SS GL + RL G ++ FTNL +DH+DYH AY+ AK LF+ P A++ D Sbjct: 188 SSIGLAEQRLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFD--WPGLRAAVVNID 245 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLP 307 DA+ + G + SV QG L+ +H + T++ + L Sbjct: 246 DAHGARLHAELQGGGLDLWSVSIQGP-ARLQARDIVHRGAGLAFTVAESAQALPLQTRLI 304 Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVDYA 363 G + V N L V AG+ A+G+ A L+ +L VPGR E F G + VDYA Sbjct: 305 GLYNVSNLLGVIAGM-RALGVPLAQALDACARLAPVPGRMEQLAFAGQP----LVAVDYA 359 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++L L +R + + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNP Sbjct: 360 HTPDALHQALAALRPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADRVIVTSDNP 419 Query: 421 RSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 R EDP I +I+ G I G + +R AI A+ DV+++AGKGHE Sbjct: 420 RGEDPRAIIHQILLGTIAGTSVRAEEDRAAAICLAVAEAEAADVVLIAGKGHE 472 >gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lysinibacillus sphaericus C3-41] Length = 476 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 155/465 (33%), Positives = 229/465 (49%), Gaps = 36/465 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V ++ +Q G IF+ G K G F+ +A+A+GA AIV + SL I Sbjct: 9 EITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISL----PIIDK 64 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS------ 140 P + V NT FLS +++L E +++A+TGT+GK++V+ FV Q+ Sbjct: 65 EIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAAV 124 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G F + +S+ Q LTT L L +GV+HV +EASS GL QHRL Sbjct: 125 IGTIGFYLDGEKQQTSYEQ---LTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRL 181 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + G F NL DH++ H +AY AK RL + L K+ ++ DD + + V Sbjct: 182 DHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLAD--LSKK--LVLNGDDNFCRSVGIY 237 Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 C S G+ +H++ V K + + + P G++ V N + A Sbjct: 238 DKKKSC---SFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +GI ++EH+ L + GR E + N G +YVDYAHT+ +L+ +L+ Sbjct: 295 LMAVWRLGIPIDDIIEHMWSLKLPEGRLEKI-DNPVGIDVYVDYAHTAEALQAVLQTFD- 352 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 S I +VF CGG+RD+ KR MG +A AD+ +T DNPR EDP I I I G Sbjct: 353 -RSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDPIIINESI---IAG 408 Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 F E+ +R AI A+ K D+++VAGKGHE + N Sbjct: 409 FTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQTQQIKN 453 >gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1003] gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1003] Length = 519 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 161/496 (32%), Positives = 237/496 (47%), Gaps = 43/496 (8%) Query: 23 MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W ++ + +D+R + AG F A D FI A+ +GA A++V Sbjct: 18 LDWLRARVQPGAHLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQP---- 73 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC 137 + FS + +++ +L V + AS YG +++L VTGT+GK+S + ++ Sbjct: 74 EGFSGALDASS-MLAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAAL 132 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G IG T + TTP L ++L+ L G V++E SSH L Q Sbjct: 133 TALGTRCAIIGTLGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R++G FTNL +DH+DYH+T +AY AK RLF P+ A+I DDA + + Sbjct: 193 GRVNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKARLFA--WPELRAAVINRDDAVGRRL 250 Query: 257 MK--RAHNAGCRVLSVGYQG-------------KFIHLKKVCAIHNKQQVTISV-EGKDF 300 + R H R ++ G F+ V A +S + + Sbjct: 251 LASTRGH---ARTIAYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDWGEA 307 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--I 358 D G F V N L G +A + L L KL V GR + +G + + Sbjct: 308 DVEVQTLGAFNVSNLLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDEPLV 367 Query: 359 YVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++LE L+ +R + + R +I +FGCGGDRD KRP+MG IA LAD +V Sbjct: 368 VIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKLADGVVV 427 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSEDP+ I +I G+ K RIE AI AI ++DV+V+AGKGHE Sbjct: 428 TSDNPRSEDPQSIIGQIAAGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEA 486 Query: 472 VHIVTNGEKKMSVDCD 487 + G+K+ D D Sbjct: 487 TQEIM-GKKRAFSDQD 501 >gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax sp. JS42] Length = 501 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 233/471 (49%), Gaps = 42/471 (8%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+R + +DSR IQ G F+A G DG + A+A+GA A +V ++ F+ Sbjct: 18 RQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVEC-EGVEPFA-- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI------ 136 + I + + + AS +G HP +LAVTGT+GK+S A ++ Sbjct: 75 -LAGDHIAALRGLKAATGMIASEWFG-HPTQRLQVLAVTGTNGKTSTAWWLADALNQLSK 132 Query: 137 --------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 C G + P Q +TTP P+ L +A + + G ++E Sbjct: 133 EELPALAGCALVGTLGMGVPPA------LQTTGMTTPDPVRLQRAFAQFAEAGHRACAIE 186 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASS GL +HRLDG ++ FTN +DH+DYH AY+ AK LF+ P A++ Sbjct: 187 ASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRAAVVNV 244 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL-FPL 306 DD + + + S+ QG L+ +H + ++V EG + L + Sbjct: 245 DDPQGAALHAELQGSDLDLWSISLQGP-ARLQAKHIVHTGAGLALTVAEGAHTEVLQTQV 303 Query: 307 PGEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G + V N L V AG+ A+G+ A L+ +L VPGR E + + + VDYAHT Sbjct: 304 IGLYNVSNLLGVIAGM-RALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHT 361 Query: 366 SNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++L L ++ + + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNPR Sbjct: 362 PDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRG 421 Query: 423 EDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +I+ G I G + +R AI A+ DV+++AGKGHE Sbjct: 422 EEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVVLIAGKGHE 472 >gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 510 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 239/476 (50%), Gaps = 31/476 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + +DSR +Q G +F+ + G++ DG F+ QA+A GA A ++S Sbjct: 30 QVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALAAGAVAALISQEAWESVSGEAGWG 89 Query: 89 NTPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 + P+LV+ + ++ A+ YG + V T + ++ + Q +G S+ Sbjct: 90 SQPVLVLPRASLNRAVAQVAAAFYGFPARQLTLVGVTGTNGKTTTTHLIEHLVQAAGRSA 149 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + +++ TT P L ++L G +E SSH L Q R+ G Sbjct: 150 ALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRAGAEVAVMEVSSHALAQDRVWGCS 209 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESPAIIYADDAYSKEVMKRAHN 262 A +TNL +DH+D+H + + Y+ AK LF +E L + A+I ADDA + +++ Sbjct: 210 FAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQEYL--QGRAVINADDAGGRRLLQ---- 263 Query: 263 AGCRVLSVGYQGKFIHLKKVCAI-----HNKQ------QVTISVEGKDFDFLFPLPGEFQ 311 + Q L+ + I N Q Q T+ F PL G F Sbjct: 264 ----AIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTPSGAFAVAAPLVGSFN 319 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N L A G+ + +GI ++ L VPGR E V + + VDYAHT + LE Sbjct: 320 LANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTLPGQDIAVIVDYAHTPDGLEN 379 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +LK +R+ G++I VFGCGGDRD+GKRP MG+IA AD IVT DNPR+EDP++I + Sbjct: 380 LLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRIAATWADQVIVTSDNPRTEDPQQILRD 439 Query: 432 IIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I+ GIPG + +R +AIR AI D +V+AGKGHE I+ G +K+ D Sbjct: 440 ILAGIPGSPRAVEVDRRQAIRLAILAAQPGDTVVIAGKGHEDYQIL--GTEKIHFD 493 >gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium urealyticum DSM 7109] Length = 533 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 239/474 (50%), Gaps = 48/474 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87 ++ + S +Q G +F A+ G++ G F A GA A++ + A L D Sbjct: 39 VDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGAAAVLTDAEGAEILAD------ 89 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ P+LVVD+ R+++ A+ +YG HP L + G + +S + + +R+ ++ + Sbjct: 90 ADLPLLVVDDVRRWMGPVAAAVYG-HPSRDLRIIGIT-GTSGKTTTTYLIERALMAKHSV 147 Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T I+ +LTTP + L+ + +GVTHV +E SSH L R+ GI Sbjct: 148 GIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVSSHALALGRVTGID 207 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP-AIIYADDAYSKEVMKRA 260 FTNL +DH+D+H T + YF K +LF + + E P A++ DD + + + Sbjct: 208 FDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVCVDDDWGQRLAGMI 267 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++G + L+VG + +V +H +Q++T++ EG++F + L G F V N+L Sbjct: 268 ADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYDIGLVGSFNVANSL 327 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373 +A +G D + + VPGR + V G+ + VDYAH ++ ++ Sbjct: 328 LAISCVTQLGEDPQAAAAAIADVQ-VPGRMQAV----DAGQPFLAVVDYAHKPGAVAAVV 382 Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + +GRI +V G GG+RD KRP+MG+ A +AD VTDDNPR E+P IR+ Sbjct: 383 RTLSDYLPSPTGRIGIVLGAGGNRDHDKRPMMGEEAAKVADAVFVTDDNPRDEEPAPIRS 442 Query: 431 EIIHGIPGFIEK-------------GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+ G+ E R +AIR A+ D +VVAGKGHET Sbjct: 443 MILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIVVAGKGHET 496 >gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum DSM 43021] Length = 514 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 236/467 (50%), Gaps = 47/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR +Q G ++VA+ G G F QA+A GA AI+ + +A + + Sbjct: 32 VSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALAAGASAILTDE----EGRAAAVATG 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV-TGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+LVV + R+ L ++ +YG+ +++ + + S +F+ + R+ + + G Sbjct: 88 LPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKSTTTFLLEAGLRA--AGHKAG 145 Query: 149 PTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + A + R LTTP L + + GVT ++E SSH L R+D + Sbjct: 146 LIGGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGRVDAVFY 205 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H+ YF K RLF + + ++ DDA+ +E++ Sbjct: 206 DVALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAG--VVNIDDAHGRELLG------ 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYN 314 LS F + A V + +G F + P LPG F V N Sbjct: 258 ---LSKIPMTTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVAN 314 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371 AL A + G+ + + L VPGR E V GG + VDY+H ++E Sbjct: 315 ALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMERV----PGGEDFQAIVDYSHKPGAVES 370 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+++R +T+GR+ VV GCGGDRD+GKRP+MG+ A LAD+AI+T DNPRSEDP +I AE Sbjct: 371 VLRSLREVTTGRLTVVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAE 430 Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +++G G I + +R AI AI DV+VVAGKGHE Sbjct: 431 MMNGALGVSHDERAHVIIEPDRAAAIDLAISRAGFGDVVVVAGKGHE 477 >gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella cf. novicida 3523] Length = 475 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 152/495 (30%), Positives = 252/495 (50%), Gaps = 31/495 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ +++ L I + +I +S DSR W FVA+ G DG+ +I +A+ Sbjct: 2 KNINQILKFLDIQTLSQNNFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDI 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D I + N ++ LS A Y K P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHEFED-------QKRIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + ++ Sbjct: 114 SISSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISY--HKNYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R +G+ F+NL DH+DYH++ YF AK +LF+ AII Sbjct: 172 MEVSSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQ--FKSLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 230 NIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKS---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + +FGCGG+RD KRPIM +IA + A +VT+DN R E Sbjct: 344 HTPDALEKALQTLANYNPNNLWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNNRFE 403 Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 + E I ++I G FI +R +AIR +IE N+ D++++AGKGHE ++ NG Sbjct: 404 NIENIFSDIKKGFKYPQKHTFIT--SREQAIRFSIENANQGDIILLAGKGHE-CYLDKNG 460 Query: 479 EKKMSVDCDIIREIL 493 K+ + +II+ +L Sbjct: 461 IKEYFDEREIIKNML 475 >gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 486 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 235/479 (49%), Gaps = 46/479 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +A ++ + G DGH FI IA+GA+ IV S ++ + V Sbjct: 21 DSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKPVE------HMKKGIAYIQV 74 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI------CQRSGLSSFQ 146 +N + L+ AS YG HP + VTGT+GKS++ S ++ + C G S Sbjct: 75 ENVNRTLNRVASLFYG-HPSRNMKVFGVTGTNGKSTITSIIKDVYSHFAPCGYIGTISIS 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + S LTTP I + K + + G+ V++E SSHGL+ R+ + Sbjct: 134 YGEVTLPPS------LTTPDAILIHKTMKDMVDAGMQAVALEVSSHGLELGRVQSVDFDV 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 F+NL DH+D+H T + YF AK +LF L K+ A++ ADDAY V + A R Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-LKKDGVAVLNADDAY---VDQLADATDAR 243 Query: 267 VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 V++ G YQ + I ++K + + T+ +G+ ++ + L + +YN L A Sbjct: 244 VVTYGIDHHASYQAENIRIEKTGS-----RFTLVHDGEHYEVVTNLVALYNIYNLLGAVA 298 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 GI A L +L ++ + GR E + + + VD+AHT + +E + + + IT Sbjct: 299 AMAESGIPIAKQLPYLNEIRQIEGRMERI-DEGQLFNVIVDFAHTPDGMEKVFEYAKDIT 357 Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 II VFG G RD KR + G+IA D I+T+D+PR EDP +I EI GI Sbjct: 358 EEGHSIIAVFGSAGKRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIANEIKSGISD 417 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 FIE +R AIR AIE N +D +++ GKG E G + D ++ R + Sbjct: 418 TNNIFIE--DRYAAIRQAIESANMKDTVLILGKGDEVFMYREFGREPWMGDHNVARHCI 474 >gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1001] gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1001] Length = 519 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 237/496 (47%), Gaps = 43/496 (8%) Query: 23 MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +QW ++ + +D+R + AG F A D FI A+ +GA A++V Sbjct: 18 LQWLRARVQPGAHLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQP---- 73 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC 137 + F I ++T +L V + AS YG +++L VTGT+GK+S + ++ Sbjct: 74 EGFGGAIDAST-MLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAAL 132 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G IG T + TTP L ++L+ L G V++E SSH L Q Sbjct: 133 TALGTRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R++G FTNL +DH+DYH T +AY AK RLF P+ A+I DDA + + Sbjct: 193 GRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRL 250 Query: 257 MK--RAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDF---------- 300 + R H R ++ G +G + A+ V + G F Sbjct: 251 LASTRGH---ARTIAYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDWGDA 307 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--I 358 D G F V N L G +A + L L +L V GR + +G + + Sbjct: 308 DVEVQTLGAFNVSNLLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDEPLV 367 Query: 359 YVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +DYAHT ++LE L+ +R + + R ++ +FGCGGDRD KRP+MG IA LAD +V Sbjct: 368 VIDYAHTPDALEKTLEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKLADGVVV 427 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHET 471 T DNPRSEDP+ I +I G+ K RIE AI AI ++DV+V+AGKGHE Sbjct: 428 TSDNPRSEDPQSIIEQIAAGMKD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEA 486 Query: 472 VHIVTNGEKKMSVDCD 487 + G+K+ D D Sbjct: 487 TQEIM-GKKRAFSDQD 501 >gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 547 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 234/467 (50%), Gaps = 29/467 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V ++ ++ G +F A+ G G F+ AIA GA A++ A + T S Sbjct: 51 EVTGVELRAQAVRRGDLFAALPGAHTHGAEFVSVAIAAGASAVLTDDAGVAMLAAGTEES 110 Query: 89 --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+LV + R+ L ++ +YG HP + + G +G S + + + Sbjct: 111 AASLPVLVHPDPRQVLGEASATIYG-HPSEHMQIIGITGTSGKTTTSYLVEAGLAAAGHT 169 Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TI + +R LTTP L + + +G+ V +E SSH L R+DG+ Sbjct: 170 IGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRERGIDTVVMEVSSHALALGRVDGV 229 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYS---KEVMK 258 + G+FTNL +DH+D+H+ YFNAK RLF + A+I DD + E+ + Sbjct: 230 RFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAVCAQRAVICTDDRWGVRMAEIAR 289 Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314 AH A +S + + Q T++ +G LPG + V N Sbjct: 290 HAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTLTGPDGTPRTATLRLPGHYNVAN 349 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372 A +AA +C + G D L + + V PGR E V RG VDYAH +LE + Sbjct: 350 AALAAAICCSAGADVDAALAGIANVDV-PGRVERV---ERGQDFLAVVDYAHKPAALEAV 405 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + +R T GRI VV G GGDRD+GKRP+MG+ AD+ +VTDDNPR+EDP IRA++ Sbjct: 406 IATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQM 465 Query: 433 IHG---IP----GFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +P G + E G+R +AI A+ DV++VAGKGHE+ Sbjct: 466 LAGAVAVPDAERGEVREIGDRADAIAAAVRWARTGDVVLVAGKGHES 512 >gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9] Length = 495 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 240/481 (49%), Gaps = 15/481 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL+ + Q ++ ++ + ++S G +F+ I G + DG F P A+A GA A + Sbjct: 5 ELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAVAAI 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130 +S + + + S+ ++ N K + + YG E I+ VTGT+GK++ Sbjct: 65 ISPQAASK---TSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTTTT 121 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ ++ L + +G T F+Q TTP I L L+ G +E Sbjct: 122 HLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGIMEV 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH L Q R+ G FTNL +DH+DYHQ + YF AK LF + A+I D Sbjct: 182 SSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDY-LQGRAVINID 240 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPG 308 D Y + + S+ + + H + + EG F PL G Sbjct: 241 DQYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNS-PFSSPLVG 299 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367 ++ + N L A + +G+D V++++ VPGR E + + + VDYAHT + Sbjct: 300 QYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVDYAHTPD 359 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE +LK R GRII VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P+ Sbjct: 360 SLENLLKAARPFIPGRIICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENPDA 419 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G+P + + G+R AI TAI D +++AGKGHE I+ G +K+ Sbjct: 420 ILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQIL--GTEKIHF 477 Query: 485 D 485 D Sbjct: 478 D 478 >gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans lithotrophicus ES-1] Length = 499 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 152/474 (32%), Positives = 233/474 (49%), Gaps = 53/474 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + SDSR + FVA G++ DG FI QAI +GA +++ + F Sbjct: 15 NVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVI----WEEHGFKWNPTW 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P L V + R L A +YG+ + + + +TGT+GK+S++ ++ + G S Sbjct: 71 SVPNLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSAL 130 Query: 147 IGPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + F + R T TP + + L+ QG +E SSH L Q R++G+ Sbjct: 131 IGTLG--NGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRVNGVH 188 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TNL RDH+D+H Q+Y AK RLF+ K A++ DD + E+ ++ +A Sbjct: 189 FDVALLTNLTRDHLDFHGDMQSYAAAKKRLFDWASLKY--AVLNLDDMFGAELAEQLQDA 246 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G + + + I + V S+ D L Q++ + AA LC Sbjct: 247 SVEVIGYGLNDDSLKMAERLGI---RMVYGSLTQMDAQGL-----TLQLHTSWGAAALCS 298 Query: 324 ---------------------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + ID A L+K V GR + +G + VDY Sbjct: 299 RLIGSFNASNLLGALAVLLASEVRIDDAARELGLQK--AVAGRMQTLGGKGLP-TVVVDY 355 Query: 363 AHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 AHT ++L+ +L +R +T G++I VFGCGGDRD+GKRP+MG +A LAD+ I+T DN Sbjct: 356 AHTPDALDKVLTTVREVTESAGGKVICVFGCGGDRDRGKRPMMGTVASKLADVRIITSDN 415 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSE+ +I +EI G+ G IE +R +AI AI D +++AGKGHE Sbjct: 416 PRSEEAAEIVSEIAAGMQGEYQVIE--DRAKAITLAIANARHIDTVLLAGKGHE 467 >gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 492 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 151/471 (32%), Positives = 241/471 (51%), Gaps = 29/471 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V++DSR + G +FVAI G DGH + QA+ +GA A+V + L + Sbjct: 29 VTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERGAVAVVSERSLDL---------S 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L+V ++ + + L AS Y E + +TGT+GK++ + ++ + G S+ I Sbjct: 80 VPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTTTTTILRDVLDVLGHSTGLI 139 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I+ ++ TTP L + L+ + +GVT V +E SSHGL+ R+ G Sbjct: 140 GTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDEGVTDVMMEVSSHGLELGRVIGTDFDI 199 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK--EVMKRAH 261 FTNL DH+D+H T + Y AK LF +L + A++ ADDA + E M Sbjct: 200 VGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRGKVAVLNADDAQTPLYETM---- 255 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G +V++ G + + + ++ T++ +G G F VYN L+A G Sbjct: 256 -TGAKVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAKLPVTVQFIGRFNVYNLLLATG 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +A G + + LE +H GR + + + G +Y DYAHT + +E LK++ + Sbjct: 315 CLLAAGYSLERIAKALEMIHPAKGRMQRL--DVPGYNVYADYAHTPDGIEQCLKSLVGVP 372 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438 +II + G GG+RD KRP MG++A A I+T D+PR E E I I G+ Sbjct: 373 KEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITTDDPRFEAYESITKGIAAGMTHDN 432 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 F+E G+R EA+R A + +++V+AGKGHE I+ G +K+ +D + I Sbjct: 433 FVEIGDREEAVRYAARLAKPDNIIVLAGKGHEKYQII--GNEKLPLDEEAI 481 >gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS185] gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS185] Length = 499 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 230/467 (49%), Gaps = 33/467 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83 + N+++ DSR I+ G +F+A+ G+K DG FI +A+ GA A++V + + Q S Sbjct: 18 QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHS 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138 + I V +R+ ++ A R H ++ +TGT+GK+S + + Q+ Sbjct: 78 DNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G + D+ TT I L + L +QG + ++E SSHGL Q Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH ++Y AK LF ++ DDA + Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + ++ +G + A + K +G ++P GE Q+++ L+ Sbjct: 256 TELKSVPAQMWGFSIEGH-----QAAAFYTKN-AKFDDQGVSATLVWP-EGETQIHSPLL 308 Query: 318 AAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A + G D + E ++ L V GR E T + + VDYAHT + Sbjct: 309 GAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPD 367 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E L +R +G + VFGCGGDRD+GKRP+MGK A AD +VT DN RSEDP + Sbjct: 368 AIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQ 427 Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I +II G+ + + +RI AI+ + + DV+++AGKGHET Sbjct: 428 IITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474 >gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Acidovorax ebreus TPSY] gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY] Length = 501 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 42/471 (8%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+R + +DSR IQ G F+A G DG + A+A+GA A +V ++ F+ Sbjct: 18 RQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVEC-EGVEPFA-- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI------ 136 + I + + + AS +G HP +LAVTGT+GK+S A ++ Sbjct: 75 -LAGDHIAALRGLKAATGMIASEWFG-HPTQRLQVLAVTGTNGKTSTAWWLADALNQLSK 132 Query: 137 --------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 C G + P Q +TTP P+ L +A + + G ++E Sbjct: 133 EELPALAGCALVGTLGMGVPPA------LQTTGMTTPDPVRLQRAFAQFAEAGHRACAIE 186 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASS GL +HRLDG ++ FTN +DH+DYH AY+ AK LF+ P +++ Sbjct: 187 ASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFD--WPGLRASVVNV 244 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL-FPL 306 DD + + + SV QG L+ +H + +V EG + L + Sbjct: 245 DDPQGAALHAELQGSDLDLWSVSLQGP-ARLQAKHIVHTGAGLAFTVAEGAHTEVLQTQV 303 Query: 307 PGEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G + V N L V AG+ A+G+ A L+ +L VPGR E + + + VDYAHT Sbjct: 304 IGLYNVSNLLGVIAGM-RALGVPLAQALQACARLRPVPGRMEQLAAAGQ-PLVAVDYAHT 361 Query: 366 SNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++L L ++ + + GR+ VFGCGG+RD GKRP+MG +A AD IVT DNPR Sbjct: 362 PDALHQALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRG 421 Query: 423 EDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +I+ G I G + +R AI A+ DV+++AGKGHE Sbjct: 422 EEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVVLIAGKGHE 472 >gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Kingella denitrificans ATCC 33394] Length = 848 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 152/453 (33%), Positives = 226/453 (49%), Gaps = 22/453 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR I+AG FVA G DG +I A+ GA + + F + P Sbjct: 60 LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGG---FEWRPEWDVPN 116 Query: 93 LVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ---ICQRSGLSSFQI 147 + + R+ + A+ YG +I+ VTGT+GK+SV ++ Q I ++ S + Sbjct: 117 QAIPDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIV 176 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G Q TTP P+ L L G V++E SSHGLDQ+R++G Sbjct: 177 GTVGNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRT 236 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNA 263 FTNL RDH+DYH++ + Y K RLF A+I DDA+ +++ +KR+ ++ Sbjct: 237 AVFTNLTRDHLDYHRSMEEYGAVKARLFH--WQGLQNAVINTDDAFGQQLCAELKRSESS 294 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V S G+ + I + + A + ++ L G F N A G Sbjct: 295 -LHVYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGAL 353 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 A G D L L + GR + + + + VDYAHT ++LE L +R I Sbjct: 354 CAGGYDFQAALNALSHIRPATGRMDCIIGEGKP-LVVVDYAHTPDALEKALATLREIKQP 412 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438 +G + VFGCGGDRD+GKRP+MG++A LAD +VT DNPR+EDP+ I A+I+ + P Sbjct: 413 AGCLWCVFGCGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPHPA 472 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E +R AI AI D++++AGKGHET Sbjct: 473 LVE-ADRKAAIEQAIAQAAPNDIILIAGKGHET 504 >gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia xenovorans LB400] Length = 518 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 228/478 (47%), Gaps = 35/478 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +D+R + AG F A + D FI AI +GA A++V + FS I + +L Sbjct: 33 ADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAINPSN-MLA 87 Query: 95 VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V + AS Y +++L V TGT+GK+S + ++ G IG T Sbjct: 88 VPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGTLGT 147 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L ++L+ L G V++E SSH L Q R++G FTN Sbjct: 148 GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFTN 207 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYHQT +AY AK RLF P+ A+I DDA + ++ R ++ G Sbjct: 208 LTQDHLDYHQTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAYG 264 Query: 272 Y---QGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVA 318 QG + A+ V + G F + G F V N L Sbjct: 265 LDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNVSNLLGV 324 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNI 376 G +A + L L +L V GR + +G + + +DYAHT ++LE L+ + Sbjct: 325 LGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEAL 384 Query: 377 R---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R T G +I +FGCGGDRD KRP+MG IA +AD +VT DNPRSEDP+ I +I Sbjct: 385 RPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQSIIEQIA 444 Query: 434 HGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 G+ K RIE AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 445 AGMKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500 >gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC 27755] Length = 488 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 241/485 (49%), Gaps = 44/485 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I E+ +DSR + G +FV I G DGH ++ +GA A++V + Sbjct: 22 EITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDVAERGAAAVIVEK-------DVEVPE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 ++ V+NTR L+L ++ +G E + + T K + V+ I + G + Sbjct: 75 GLTVIKVENTRYALALMSAAYFGYPAEKLKTIGITGTKGKTTTTYMVKAILEEVG---HK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + D + TTP + K + + G V +E SS GL HR GI Sbjct: 132 VGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQMVEAGCDCVVMEVSSQGLMLHRTAGI 191 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNLG DHI + H+ + Y K LF++ I DD + ++V K Sbjct: 192 MFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQC----KVGIGNVDDKWFEDVFK-- 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEG-KDFDFLFPLPGEFQVYNA 315 +A C + + G+ G+ L+ + H + V V G DFD +PGEF VYN+ Sbjct: 246 -DATCEIETFGF-GEKADLRAIDVKHISRPGYLGVWYHVTGLMDFDVEIDIPGEFSVYNS 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +C + + + L K+ V GR E V S + +DYAH + +LE +L Sbjct: 304 LTAIAVCRHFNVPVEKIKDAL-KVAKVKGRIEMVKV-SDDFTLMIDYAHNAMALESLLHT 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R GRI+ VFGCGG+R + +R MG+++ L+D I+T DNPR E+P+ I +II G Sbjct: 362 LRDYNPGRIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIITSDNPRFEEPQAIIDDIIVG 421 Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD---I 488 + +I+ +R EAIR AIE DV+V+AGKGHET + K + D D + Sbjct: 422 MKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKGHETYQEI----KGVKYDMDERVL 477 Query: 489 IREIL 493 I+E+L Sbjct: 478 IKEVL 482 >gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Rhodococcus opacus B4] Length = 496 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 151/483 (31%), Positives = 233/483 (48%), Gaps = 40/483 (8%) Query: 9 KDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + PE++ +L S + + ++ DSR ++AG ++ A+ G G F +A ++ Sbjct: 12 RPLPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASR 71 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124 GA A+ L D ++ + P +VV + R+ L AS +YG E ++ VTGT+ Sbjct: 72 GAVAM-------LSDRTSDV---LPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTN 121 Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S + + +G ++ G T ++ TTP L + L+ + Q + Sbjct: 122 GKTSTVYLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIG 181 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-S 242 V++E SSHGL HR+DG G FTNL RDH+D+H AYF AK RLF+ P+ + Sbjct: 182 AVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFD---PRHCA 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGK 298 A I DD + + + A V + + + IH V A T+ G Sbjct: 239 AAAIGIDDEFGRRLA-----ATVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGD 293 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L G QV NAL A + G+D + +E L VPGR E V + Sbjct: 294 RISVRLRLLGVHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAG-QPFFA 352 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +VDY H + + +R++T+GR+I V G G+RD GKR +G A AD +VTD+ Sbjct: 353 FVDYMHNTAGQRRLFPYLRSLTAGRVIAVVGATGERDPGKRAPLGATAARFADAVVVTDE 412 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P SED +++R ++ G GN R EAI A+ + DV+VVAG+GH+ Sbjct: 413 SPYSEDAQRLREDVARGA---RSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAGRGHD 469 Query: 471 TVH 473 V Sbjct: 470 RVQ 472 >gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas entomophila L48] gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Pseudomonas entomophila L48] Length = 487 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 236/477 (49%), Gaps = 34/477 (7%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR ++ G +F+A+ G K DG I A + AY Sbjct: 8 LFAHASRDPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHI----ADALARGAAAVAYEE 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ-- 135 Q S + P++ V LS A R YG+ + + VTGT+GK+SV + Q Sbjct: 64 QGASVLPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQAL 123 Query: 136 --ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + QR GL IG T Q RLTTP PI + L+ L G V++E SSH Sbjct: 124 DALGQRCGL----IGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSH 179 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 L+Q R+ + TNL RDH+DYH + AY AK +LF ++ DD + Sbjct: 180 ALEQGRVAALDFDIAVMTNLSRDHLDYHGSMGAYEAAKAKLFA--WSSLRARVVNLDDDF 237 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGE 309 + + AH R++S Q L A N + V ++ +G + L G Sbjct: 238 GRR-LAEAHGQ-SRLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQG-EHALRSRLLGR 294 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F + N L A +A+ +L+ +LH GR + +G + + VDYAHT ++L Sbjct: 295 FNLSNMLAAVATLLALDYPLDEILKVTPQLHGPIGRMQRLGGGDKP-LVVVDYAHTPDAL 353 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L+ +R G+++ +FGCGGDRD GKRP+M +A LAD +VTDDNPR+EDP +I Sbjct: 354 EKVLEALRPHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTEDPLRIF 413 Query: 430 AEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 +I PGF + + R EAI I DV+V+AGKGHE + NGE+ Sbjct: 414 DDI---RPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKGHEDYQEI-NGER 466 >gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806] Length = 496 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/501 (34%), Positives = 251/501 (50%), Gaps = 35/501 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEV---SSDSRHIQAGWIFVAIVGNKEDGH 57 MKLQ+L L N + P+ I E+ S++S Q G +F+ + G + DG Sbjct: 1 MKLQEL-------LANITPVSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGG 53 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115 F A+ GA A ++S A + + ++VV + + A++ Y +P Sbjct: 54 EFWRSALETGALAALISPAAAA---KFPPPEDACVIVVADLVTATAAIAAKFY-HYPALT 109 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 ++ VTGT+GK++ ++ ++G+ + G T F + TTP L + Sbjct: 110 LKLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQAS 169 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ S G +E SSH L Q R+ G FTNL RDH+DYH + YF AK +L Sbjct: 170 LAKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKL 229 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNK 288 F + AII DDAY + + SV + K +H + Sbjct: 230 FSPDY-LQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQST----GV 284 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + V ++ +G + F PL G++ + N L A + G+D V+ + + VPGR E Sbjct: 285 EGVMVTPQG-EIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMER 343 Query: 349 VG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + + VDYAHT +SLE +LK R SGR+I VFGCGGDRD+ KRP+MGKIA Sbjct: 344 VSIAPDQDISVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAA 403 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVV 464 +LAD+AIVT DNPR+E PE+I +II GIP I +R AI TAI+ D +++ Sbjct: 404 ELADLAIVTSDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVII 463 Query: 465 AGKGHETVHIVTNGEKKMSVD 485 AGKGHE I+ G +K+ D Sbjct: 464 AGKGHEDYQIL--GTEKIHFD 482 >gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 487 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 150/477 (31%), Positives = 236/477 (49%), Gaps = 50/477 (10%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS+ + +I + +DSR IQ ++ + G DGH F+ + + +GA IV A Sbjct: 2 KLSLLFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIV--HA 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV 133 ++ T+ + V+N + L++ AS+ YG HP + + VTGT+GKS++ S + Sbjct: 60 KDIE----TMHKGVAYIKVENVNRTLNMVASKFYG-HPSHQLTVFGVTGTNGKSTITSII 114 Query: 134 QQI------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + C G S G + S LTTP PI + ++ + G+ V++ Sbjct: 115 KDVYSHFKPCGYIGTISISYGDVTMPPS------LTTPDPILIHHSMKDMVDYGMQAVAL 168 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGL+ R+ + FTNL DH+D+H T + YF AK +LF + L + A+I Sbjct: 169 EVSSHGLEMGRVQSVDFDVAVFTNLTYDHLDFHGTLENYFEAKHKLFLQ-LKSDGVAVIN 227 Query: 248 ADDAYSKEVMKRAHNAGCR--VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299 DD ++K ++ AGC+ ++S G Y+G IH+ N + G+ Sbjct: 228 VDDPFAKRMV-----AGCKAHIVSYGVTADADYRGDNIHIGT-----NGSTFDLIHHGET 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L + +YN L A G+ ++ +L +L V GR E + + + Sbjct: 278 YTITTNLVAMYNIYNLLGAIAAMCESGVALKEIVPYLSELTQVDGRMERI-DEGQAFNVI 336 Query: 360 VDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VD+AHT + +E + + +IT II VFG G RD KR + G+IA D I+T+ Sbjct: 337 VDFAHTPDGMEKVFEFANSITPDGNAIIAVFGSAGKRDTKKRKVFGEIADRYCDSIILTE 396 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 D+PR E+P I EI GI FIE +R AIR AIE N D +++ GKG E Sbjct: 397 DDPRDENPRDIANEIKGGIKDTNNIFIE--DRYSAIRQAIESANVNDTVLILGKGDE 451 >gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Microcystis aeruginosa NIES-843] gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Microcystis aeruginosa NIES-843] Length = 497 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 173/500 (34%), Positives = 253/500 (50%), Gaps = 33/500 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQ+L+ P L++ +S P+ E +I +S++S Q G +F+ + G + DG F Sbjct: 1 MKLQELL-TTIP-LVSPIS-SPIAL-ETEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56 Query: 61 PQAIAQGAEAIVVSSAYSL-----QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 A+ GA A ++S A + +D S + ++ KF A L Sbjct: 57 RSALETGAVAAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTL------ 110 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174 ++ VTGT+GK++ ++ ++G+ + G T F + TTP L +L Sbjct: 111 KLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASL 170 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + S G +E SSH L Q R+ G FTNL RDH+DYH + YF AK +LF Sbjct: 171 AKAVSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLF 230 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQ 289 + AII DDAY + + SV + K +H + Q Sbjct: 231 SPDY-LQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPT----GVQ 285 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 V ++ +G + F PL G++ + N L A + G+D V+ + + VPGR E V Sbjct: 286 GVMVTPQG-EIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERV 344 Query: 350 G-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + VDYAHT +SLE +LK R SGR+I VFGCGGDRD+ KRP+MGKIA + Sbjct: 345 SIAPDQDISVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAE 404 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVA 465 LAD+AIVT DNPR+E PE+I +I+ GIP I +R AI TAI+ D +++A Sbjct: 405 LADLAIVTSDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIA 464 Query: 466 GKGHETVHIVTNGEKKMSVD 485 GKGHE I+ G +K+ D Sbjct: 465 GKGHEDYQIL--GTEKIHFD 482 >gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 494 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/466 (30%), Positives = 229/466 (49%), Gaps = 37/466 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+I ++++DSR + G +FVA G D H F + QG + IVV S + Sbjct: 20 DREITDITTDSRTAEEGSVFVATKGYTVDSHKFCQDVVNQGCKLIVVES-------EQEV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V TR+ SL +LY E + VTGT+GK+S+A+ + QI ++ G S Sbjct: 73 EGDVTQVIVPKTRRVASLIVHKLYNYPSEQLTTYGVTGTNGKTSIATMIHQIHRKLGKGS 132 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G I+ TTP + L K + G +++E SSHGL RL G++ Sbjct: 133 AYLGTNGFQINETVTKGENTTPETVTLTKKIHEAVEAGAESMTLEVSSHGLALGRLSGVE 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK LF +L L KE A++ ADD +S+ Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLRKEKFAVVNADDDFSE------ 246 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQ 311 + SV F + A +++ S+ G FDF+ P G+F Sbjct: 247 -----YLTSVTPYEVFTYGIHRPAQFKAERIQESLTGASFDFVTPDGTFHVDSPYVGKFN 301 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N + A G +++ + +L V GR E + S + +DYAHT++ +E Sbjct: 302 ISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEGRLEVLDP-SLPIDLIIDYAHTTDGIEK 360 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 ++ ++ ++I + G G+RD K P MGK A AD I T DNP ++DP+ + AE Sbjct: 361 LIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGKQA-SRADYVIFTPDNPANDDPKMLTAE 419 Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + G ++E +R E IR AI++ D +V+A KG E I+ Sbjct: 420 LAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVLASKGREPYQIM 465 >gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 499 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 240/482 (49%), Gaps = 51/482 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R + ++ D R I+AG +F A+ G DG F +A+ +GA A++ + Sbjct: 47 RATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTAGQ--------P 98 Query: 86 IRSNTPILVVDNT--RKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141 + P LVV R + A R++G +++ VTGT+GK++ S V Q+ +R G Sbjct: 99 VAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLG 158 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +G T+ S RLTTP LA+ L+ G V++E SS + R++G Sbjct: 159 EG---VGVLGTLWS-----RLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAMERIEG 210 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + G FTNL +DH+D+H + + YF AK RLFE + + +I DD + Sbjct: 211 LHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFEP--ERTAIGVINVDDPW--------- 259 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNAL 316 G R+ + +I + I G F + L GE + N L Sbjct: 260 --GARLAA-----SVRVPVVPVSISAVTDIEIDAAGIRFRRNGRWYRSRLVGEHNLRNIL 312 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A + +G D L+ L ++ GR + + RG + VDYAH+ ++L +L+ Sbjct: 313 LAVSVLEQVGFDPDLLRGVLGEVESPRGRMQRI-LGPRG-LVVVDYAHSPDALAAVLRAA 370 Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R + GR++VVFG GG+RDQ KRP+MG +A LAD+AIVT DNPRSEDP I A+I+ Sbjct: 371 RLLVGPRGRLLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAAIAAQIVA 430 Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 G G +R AI A+ M+ DVLVVAGKGHE V ++ +G D D++ Sbjct: 431 GWRDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKGHERVQVI-DGVATPFDDIDVVHA 489 Query: 492 IL 493 L Sbjct: 490 AL 491 >gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 497 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 146/493 (29%), Positives = 245/493 (49%), Gaps = 31/493 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L Y FP + N P ++K + +S DSR + + +F+AI G K+DG+ FI Sbjct: 1 MKKNNLKYILFPWIKNT----P----QKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +A+ + AI+ + + +N PIL + +S A+R+Y K P I Sbjct: 53 FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVY-KEPAKTLKI 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V + Q + G +G + + + TT S I + L Sbjct: 112 IGVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHI 171 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + V++E SSHGL Q+R+ I G FTNL +DH+DYH+ + Y +AK F + Sbjct: 172 AAKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ 231 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQ 290 K I+ A+D Y+K+ +++ + +++ Y K+I+ + N Sbjct: 232 --HKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTD 289 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FE 347 V L G F + N L++ + + + ++ +L + GR F+ Sbjct: 290 VEFESSWGQGILSTCLIGYFNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFD 349 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 G ++ +DYAHT ++L+ L I++ +I +FGCGG+RDQ KRP+MG I+ Sbjct: 350 VFGK----PKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGCGGERDQTKRPLMGSISE 405 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464 +AD I+T+DNPR+E+ KI EI+ G + NR +AI + N D++ + Sbjct: 406 KIADRVIITNDNPRNENQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANIDDIIFI 465 Query: 465 AGKGHETVHIVTN 477 +GKGHE I+ N Sbjct: 466 SGKGHENQQIIKN 478 >gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827] Length = 471 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 233/484 (48%), Gaps = 40/484 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +F+AI G++ DG +I QAIAQG A+V + + P++ + Sbjct: 4 DSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPVVYL 63 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ LS A Y +HP + + G +G + + Q I Q + +G TS + Sbjct: 64 NDLNSRLSALAGAFY-QHPVEKMKLVGVTGTNGKTTTTQLIAQWAQ----GLGETSAVMG 118 Query: 156 FAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + L TT S + + L+ L Q T ++E SSHGL Q R+ + A Sbjct: 119 TVGNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+DYH ++Y AK LF K II ADD + ++R A C V Sbjct: 179 VFTNLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQ--IINADDDVGLKWLQRLPQA-CAV 235 Query: 268 -----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + +QG ++ V + + + PL G F V N L+A Sbjct: 236 SMEQRIPEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATL 295 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + +LE L V GR E ++ + VDYAHT ++LE L R G Sbjct: 296 LTMDYSLEQLLEASSSLSPVCGRMEVFSAPNKP-TVVVDYAHTPDALEKALAAARLHCKG 354 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------- 435 ++ VFGCGGDRD+GKRP+MG A + AD ++TDDNPRSE+P I +I+ G Sbjct: 355 QLWCVFGCGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILDSSRV 414 Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREI 492 IPG R EA+ ++I N DV+V+AGKGHE I+ G +++ D + + Sbjct: 415 LAIPG------RAEAVTSSIMQANADDVIVIAGKGHEDYQII--GHRRLDYSDRLTVARL 466 Query: 493 LGLI 496 LG++ Sbjct: 467 LGVL 470 >gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum Rt17-B1] Length = 497 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 158/517 (30%), Positives = 259/517 (50%), Gaps = 56/517 (10%) Query: 1 MKLQDLIYKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MKL LI E I + + P + ++ I +S++S +++ +F+ G+K D H Sbjct: 1 MKLGKLI-----ETIEKFVVKSNIPPELIDKDIEHISNNSNNLKENTLFICRKGSKFDSH 55 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 + +G +V+ I + P + V ++R + A+ Y HP Sbjct: 56 TIAERLYNEGMVIALVTEE--------EINTKLPHVQVYDSRLAEAYLAAEFYS-HPYQH 106 Query: 118 L---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLA 171 L VTGT+GK++ A I Q+ GL+ G + ++ D TTP I + Sbjct: 107 LITFGVTGTNGKTTCAHLFHHIMQQFGLNGSLSG--TVLNDILGDKFYVHNTTPDAITIM 164 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +S G ++ S+E SSH LDQ R++ I+ TN+ RDH+DYH T + Y N+K+ Sbjct: 165 DNMSKTHKNGGSYYSMEVSSHSLDQGRVETIRFDIAGLTNITRDHLDYHPTFEHYVNSKL 224 Query: 232 RLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 LF+ LL K+ A+I ++ Y + + K+ N ++ Q K Sbjct: 225 HLFD-LLKKDGIAVI--NEEYVQLLNGKKVPNLVTFGVNENAQYKI------------SD 269 Query: 291 VTISVEGKDFDFLFP---------LPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLH 340 +T G +F P + GE+ +N LV AGL + IG + V+ ++ Sbjct: 270 ITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLAGL-VEIGYEIDEVISYISSFR 328 Query: 341 VVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 V GRFE + R G + +D+AH+ ++LE ++ + R + GR+IVV+G GG D+GKR Sbjct: 329 GVDGRFEPIPEARRLGIEVVIDFAHSPDALEKVISSARKLAKGRVIVVYGAGGQADKGKR 388 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG--NRIEAIRTAIEML 456 P+M ++ LADIAI+T D+PR E+PE+I E+ G+ P + +R EAI TAI + Sbjct: 389 PMMAEVVTRLADIAILTTDDPRGENPEEIINEVEKGVRPNSLSLTVLDRKEAIDTAITLA 448 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 N+ DV+++ G+GHE I ++ K D D+ +I+ Sbjct: 449 NRGDVVLITGRGHEPYQIFSDTLKIPFKDRDVALDII 485 >gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces bingchenggensis BCW-1] Length = 544 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 157/487 (32%), Positives = 235/487 (48%), Gaps = 41/487 (8%) Query: 13 ELINQLSI-------FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 EL +QL I P E + ++ DSR ++ G ++ A+ G + G F QA Sbjct: 37 ELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAD 96 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123 GA A++ + D +A + P+LVV+N R + A+ +YG+ ++L +TGT Sbjct: 97 LGAVAVLTDPGGA--DRAAA--TGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGITGT 152 Query: 124 SGKSSVASFVQ---QICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 SGK++ A V+ + G S G T+ S D R+ TTP L + Sbjct: 153 SGKTTTAYLVEGGLKAAAAKGDGSL-TGLIGTVESRIGDERIKSERTTPEATDLQALFAV 211 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +GV +++E SSH L R+DG FTNL +H+++H + YF AK +LF + Sbjct: 212 MRERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFTK 271 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SV 295 + A+I DD Y K ++ + + G+ V + TI Sbjct: 272 A--RSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILGP 329 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ PLPG F V N L A GID + + + VPGR E V Sbjct: 330 NGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDA---- 385 Query: 356 GRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G+ Y VDYAH ++++E +L+ +R +T GR+ V GCGGDRDQ KR MG AD Sbjct: 386 GQPYLAVVDYAHKTDAVESVLRALRKVTEGRLHAVLGCGGDRDQQKRGPMGAAVARYADT 445 Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLV 463 A++T DNPRSEDP I A ++ G +P E+G+ + +AI A+ D ++ Sbjct: 446 AVLTSDNPRSEDPLAILATMLAGAAEVPAH-ERGDVLVDADRAQAIAAAVARAEPGDTVL 504 Query: 464 VAGKGHE 470 VAGKGHE Sbjct: 505 VAGKGHE 511 >gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer DSM 44963] Length = 507 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 146/480 (30%), Positives = 240/480 (50%), Gaps = 45/480 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR G++F+A+ G DG ++ A GA VV+ L + I P Sbjct: 32 LAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGA---VVALGAPL---PSAIDLPIPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL---S 143 + V++ R L+ A YG + + VTGT GK++ ++ + + +R+G+ + Sbjct: 86 IEVEDVRTALADLACAFYGFPARELCTIGVTGTDGKTTTSNIISTLFDAAGRRTGMMTTA 145 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +F++ +A R +T + + + L + TH +E++SHGL+ R+ G Sbjct: 146 NFKLNG----QEWANATRQSTLEALEIQEFLRKMVEMQATHAVIESTSHGLELQRVRGCA 201 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-------AIIYADDAYSKEV 256 G TN+ +H+D+H+T AY AK RLFE L P++ AI+ DD+ S EV Sbjct: 202 FDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDS-SYEV 260 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVY 313 +K CRV + Y + + +H ++ + + + PL G F V Sbjct: 261 LK----PYCRVPILDYGIETDAAVRAVDLHLQASRTAFRLILPDAECQIETPLIGRFNVS 316 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A + GI ++ + L + VPGR E + + + VDYAHT++SL+ +L Sbjct: 317 NCLAAIATAYSQGIPLDVITQTLATIKGVPGRMEHID-EKQNFSVIVDYAHTADSLQKVL 375 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R +T+G+++VVFG G+RD+ KRP+MG +A ++D ++TD++PR ED E I EI Sbjct: 376 AILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAAQMSDFFVITDEDPRDEDRESILREIA 435 Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G F+ +R EAI TA D +++AGKGHE I+ G K+ D Sbjct: 436 VGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDTVLLAGKGHEQSIII--GRDKLPWD 493 >gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. B14905] Length = 513 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 159/493 (32%), Positives = 241/493 (48%), Gaps = 43/493 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L +L+ KD+P + SI +I V ++ ++ G IF+ G K G F+ Sbjct: 25 LQLAELL-KDWPCSVTGGSI------RTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFV 77 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 +A+A+GA AIV + SL I P + V NT FLS +++L E +++ Sbjct: 78 KEALARGAAAIVSEESISL----PIIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVI 133 Query: 119 AVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 A+TGT+GK++V+ FV Q+ G F + +S+ + LTT L Sbjct: 134 AITGTNGKTTVSHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEE---LTTLQAKELH 190 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L +GV+HV +EASS GL QHRLD + G F NL DH++ H +AY AK Sbjct: 191 PILKQCVRKGVSHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKK 250 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290 RL + L K+ ++ DD + + V C S G+ +H++ V K Sbjct: 251 RLAD--LSKK--LVLNGDDNFCRSVGIYDKKKSC---SFGFDNHNDLHIQIVSETVGKTV 303 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + + P G++ V N + A +G ++EH+ L + GR E + Sbjct: 304 LCLQTSASEHIIEIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKI- 362 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 N G +YVDYAHT+ +L+ +L+ S I +VF CGG+RD+ KR MG +A A Sbjct: 363 DNPVGIDVYVDYAHTAEALQAVLQTFD--RSKTIYLVFSCGGNRDKAKRFAMGAVASKYA 420 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464 D+ +T DNPR EDP I I I GF E+ +R AI A+ K D+++V Sbjct: 421 DVIYLTTDNPRDEDPIIINESI---IAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLV 477 Query: 465 AGKGHETVHIVTN 477 AGKGHE + N Sbjct: 478 AGKGHEQTQQIKN 490 >gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 499 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 227/481 (47%), Gaps = 29/481 (6%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + I+ + DSR + +G +F + G DGH F A+ GA A++ + Sbjct: 23 QLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLC------EHIP 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRS 140 ++ + PI++ + R L AS + HP +++ VTGT+GKS+ ++ I + Sbjct: 77 DGVKKDVPIILSSDARSALGAIASSFH-DHPSESLSMVGVTGTNGKSTTTYMIRSIMRGR 135 Query: 141 GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G ++G TI+ + TTP + LS + +E SSHGL Q Sbjct: 136 G----KVGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQ 191 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 RL G FTNL +H+D+H + YF K LF + + I DD Y K + Sbjct: 192 GRLSGCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKYNCKKIFNVDDPYGKRL 251 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ + S + + +++EG+ PL G + V NAL Sbjct: 252 LRECSGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLPLIGRYNVSNAL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA C +IG + LE + VPGR E RG I VDYAHT ++L +L Sbjct: 312 AAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAI-VDYAHTPDALSNLLSAA 370 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R I GR+I VFG GG+R +G R MG+IA AD ++T DNPR EDP I +I+ G+ Sbjct: 371 REICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNPRGEDPLSIVEDILEGV 430 Query: 437 PGFIEKGN-------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 GN R +AI A++M + DV+V++GKG E +I+ G+K D + I Sbjct: 431 HKV--DGNSYDVIIDRKDAIYRALDMSREGDVVVISGKGPEN-YILIKGKKTPYSDSESI 487 Query: 490 R 490 R Sbjct: 488 R 488 >gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS223] gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS223] Length = 499 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 226/460 (49%), Gaps = 19/460 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + N+++ DSR I+ G +F+A+ G+K DG FI +A+ GA A++V + + Q R Sbjct: 18 QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHR 77 Query: 88 SNTP----ILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138 N I V +R+ ++ A R H ++ +TGT+GK+S + + Q+ Sbjct: 78 DNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G + D+ TT I L + L +QG + ++E SSHGL Q Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH ++Y AK LF ++ DD + + Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDTVGESWL 255 Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + ++ G+Q + K T+ + + PL G F + N Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGVSATLVWPEGETEIHSPLLGAFNLSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G D + E ++ L V GR E T ++ + VDYAHT +++E L Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTAKNITLVVDYAHTPDAIEQALN 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R G + VFGCGGDRD+GKRP+MG+ A AD +VT DN RSEDP +I +II Sbjct: 375 ALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434 Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ + + +RI AI+ + + DV+++AGKGHET Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474 >gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Acinetobacter sp. ADP1] Length = 499 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 156/475 (32%), Positives = 237/475 (49%), Gaps = 54/475 (11%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 ++WR++ DSR+IQ +F+A+ E +F A+AQGA I+ L+ Sbjct: 16 IEWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKTRIFAETALAQGALGIISEQPLGLE 75 Query: 81 D--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV----- 133 A +R + +K + A+R I+AVTGT+GK++++ V Sbjct: 76 REWVCADVRHRMGQWQKNYLQKTEPVNAAR--------IIAVTGTNGKTTISRLVAELLT 127 Query: 134 --QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 QQ C G + I P S+ TT + L AL +G S+EASS Sbjct: 128 LQQQRCAVMGTTGNGILPHLNPSTH------TTLDALQLQSALHQYVKEGARFASLEASS 181 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGL+Q RL+G + ++NL RDH+DYH T AY AK RLF A+I DDA Sbjct: 182 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFA--FKSLKVAVINQDDA 239 Query: 252 YSKEVMKR--AHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-------D 301 Y+ E+MK A N A ++L+ A ++ +++ S+ G F + Sbjct: 240 YA-ELMKAVAAQNPAQPQILTYSL--------TQSADYSVKELQYSLSGARFILVGPKGE 290 Query: 302 FLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +L PL G F V N + A G +++ + +L PGR + + R Sbjct: 291 YLVESPLLGHFNVENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVIRDQDR--LFV 348 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++L +LK +R ++ VFGCGGDRD+GKRP+M + AL+ A+ I+T DN Sbjct: 349 VDYAHTPDALNQVLKTLRRHVQQQLWAVFGCGGDRDRGKRPLMTQAALNGANPVILTSDN 408 Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PR+E+P++I A++ GI E +R EAI+ ++ D++V+AGKGHE Sbjct: 409 PRTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVIAGKGHE 463 >gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Dermacoccus sp. Ellin185] Length = 501 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 157/498 (31%), Positives = 237/498 (47%), Gaps = 56/498 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V+ DSR + G FVAI G DG F+PQA+A GA +V +D Sbjct: 23 IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASLVVAE-----RDVE-----G 72 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VV + R L+ A+ G H + +TGT+GK++ +S+V + + Sbjct: 73 APTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTT-SSYVLHGILSAAYGEEKT 131 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G +T R TT + L+ + GV HV +E SSHG+ HR+ G + Sbjct: 132 GLLTTAEIVVGREREPAVRTTGEAPQVQGNLARMRDAGVEHVVLETSSHGIHLHRVAGTR 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A FTNL RDH+D H T + YF K RLFE + P + DDAY ++ A Sbjct: 192 YAAALFTNLTRDHLDLHGTMEDYFLTKRRLFEW---TDGPKLTNVDDAYGARIV--AEVP 246 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VEGKD----FDFLFPLPGEFQVYN 314 G V + + KV T++ ++G+D + PL G++ V+N Sbjct: 247 GTLGFGVSENADY-RITKVHPSDGGTAFTLTTPERFLDGRDAPGVIELQMPLLGDYNVHN 305 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMIL 373 A+ + + +G+ ++ + + VPGRFE V ++G + VDYAHT LE++L Sbjct: 306 VAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPAATAKGFEVVVDYAHTEVGLELVL 365 Query: 374 KNIRTIT------------SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 R + GR+I V+G G RD KRP MG+ A LAD+ I+T+D+ Sbjct: 366 DVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAKRPKMGEAASRLADVNIITNDDTY 425 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I E++ G + N R +AIR A+ D++VVAGKGHE V + Sbjct: 426 DEDPQAIADEVMAG----ADPSNTTIVLDRRDAIRQALTQARPGDIVVVAGKGHEHVQHL 481 Query: 476 TNGEKKMSVDCDIIREIL 493 G+ D ++ E+L Sbjct: 482 PGGDVDFH-DTTVVTELL 498 >gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548] Length = 484 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 149/492 (30%), Positives = 251/492 (51%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 67 -SLVLTDSHQFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + ++ Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KKYQNLV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 235 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 292 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A I+T+DN R E Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDNNRFE 408 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++AGKGHE ++ NG K Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 467 Query: 481 KMSVDCDIIREI 492 + + +II+ + Sbjct: 468 EYFDEREIIKNM 479 >gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter cryohalolentis K5] gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychrobacter cryohalolentis K5] Length = 570 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 146/413 (35%), Positives = 216/413 (52%), Gaps = 47/413 (11%) Query: 91 PILVVDNTRKFL-SLFASRLYGKHP---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L V N R FL +L +RL + P ++AVTGT+GK++++ V Q+ Q +G+SS Sbjct: 146 PVLHVPNIRDFLGTLIQARLQYQQPVTLPTVIAVTGTNGKTTISQLVAQLTQLTGMSSAV 205 Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + Q + TT + + + L + +G +++EASSHGLDQ RL G+ + Sbjct: 206 MGTAGNGRFGALVQASH-TTGDVLAVQQFLYQMGKEGAELLALEASSHGLDQQRLQGMPV 264 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263 +TNL RDH+DYH Y AK +LF++ P + AII DD +++ ++ AH + Sbjct: 265 SVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKAHFPDLTHAIINIDDEHAQIMLDTAHAS 324 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG------KDFD--------FLFPLPGE 309 V + LK + +T S+ G DFD + PL G Sbjct: 325 NLTVWTYSLDS----LKTATFV--AANITPSLRGVEISLRTDFDDGTMNHLDIVSPLLGR 378 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP------GRFEFVGTNSRGGRIYVDYA 363 F V N L A +A+GI LEH+ VVP GR + V +N G VDYA Sbjct: 379 FNVANLLAAMAAAVALGIS----LEHIAA--VVPQLQGAVGRMQRVPSND--GCFIVDYA 430 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++L +L +++T G++ VFGCGGDRD GKRP+M + L AD ++T DNPR+E Sbjct: 431 HTPDALSQVLASLKTHCKGQLWAVFGCGGDRDAGKRPLMAQAGLAGADKVVLTADNPRTE 490 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVAGKGHET 471 DP I ++ G+ + IE AI A+ D++V+AGKGHET Sbjct: 491 DPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQAAADDIVVIAGKGHET 543 >gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 229/468 (48%), Gaps = 29/468 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I +S +S Q G +F+AI G+K+DG +IP AIA+G AI+ + + Sbjct: 17 ECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAKGVAAILAEAKGQTKHGEIHK 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 + PI+ + K LS A Y + P L +TGT+GK++++ + G + Sbjct: 77 LHDVPIIYFNQLNKMLSAIAGHFY-QQPSRFLRLIGITGTNGKTTISYLLANWLSLLGET 135 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S +G I + TT S I + + L + QGV +E SSHGL Q R+ + Sbjct: 136 SAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVKFSIIEVSSHGLVQDRVSNL 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A F+NL +DH+DYH Y AK +LF EL S II DD K + Sbjct: 196 NFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSEL--NVSKRIINVDDTVGKNWLVHLPQ 253 Query: 263 A----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNAL 316 A + + G ++ +K+ IH+ V I+ + L GEF V N L Sbjct: 254 AVAVTANNSIPHNWPGYWLCARKI--IHHTSGVNINFNSYWGSGEIYSNLIGEFNVSNIL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 ++ + +G +++ KL + GR E + + VDYAHT ++L L + Sbjct: 312 LSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWP-VVIVDYAHTPDALAKALLAV 370 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + G+I +FGCGG+RD+ KRPIMG IA + AD I+T+DNPR E+P+ I +I Sbjct: 371 KMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADYIIITNDNPRWEEPQDIIEDI---K 427 Query: 437 PGFIEKGN---------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GFI GN R AI+ AI + QD++++AGKGHE I+ Sbjct: 428 CGFIN-GNHTNKTVILCRSLAIQHAIIHASPQDIILIAGKGHENYQII 474 >gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis raciborskii CS-505] Length = 495 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 240/481 (49%), Gaps = 15/481 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL+ + Q ++ ++ + ++S G +F+ I G + DG F P A+A GA A + Sbjct: 5 ELLAVIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAGAVAAI 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVA 130 +S + + S+ ++ + K + + YG E I+ VTGT+GK++ Sbjct: 65 ISPQAASK---TPPTSDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTTTT 121 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++ ++ L + +G T + F+Q TTP I L L+ G +E Sbjct: 122 HLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGIMEV 181 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH L Q R+ G FTNL +DH+DYHQ + YF AK LF + A+I D Sbjct: 182 SSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDY-LQGRAVINID 240 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPG 308 D Y + + S+ + + H + + EG F PL G Sbjct: 241 DHYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNS-PFSSPLVG 299 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSN 367 ++ + N L A + +G+D V++++ VPGR E + N + VDYAHT + Sbjct: 300 QYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVDYAHTPD 359 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 SLE +LK R GR+I VFGCGGDRD+ KRP MG+IA DLAD+ +VT DNPR+E+P+ Sbjct: 360 SLENLLKAARPFIPGRMICVFGCGGDRDKTKRPKMGRIAADLADVVVVTSDNPRTENPDA 419 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G+P + + G+R AI TAI D +++AGKGHE I+ G +K+ Sbjct: 420 ILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQIL--GTEKIHF 477 Query: 485 D 485 D Sbjct: 478 D 478 >gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis C4D1M] Length = 515 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 159/475 (33%), Positives = 227/475 (47%), Gaps = 32/475 (6%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +D+R + AG F A + D FI A+ +GA A++V + FS I ++T L Sbjct: 33 ADTRSLTAGDAFFAYAVDGADNRAFIDGALERGAAAVLVQP----EGFSGAIDAST-TLA 87 Query: 95 VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V + AS YG +++L VTGT+GK+S + ++ G IG T Sbjct: 88 VPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGKRCAIIGTLGT 147 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L ++L+ L G V++E SSH L Q R++G FTN Sbjct: 148 GLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTN 207 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH T +AY AK RLF P+ A+I DDA + ++ R ++ G Sbjct: 208 LTQDHLDYHHTFEAYEAAKARLFA--WPELRAAVINRDDAAGRRLLASTQGH-ARTIAYG 264 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAGL 321 + A V + G F + G F V N L G Sbjct: 265 LDSAQQSAPQADASLLASNVRATPTGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLGA 324 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTI 379 +A I L L KL V GR + +G + + +DYAHT ++LE L+ +R + Sbjct: 325 LLAAEIPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEALRPM 384 Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + R +I +FGCGGDRD KRP+MG IA +AD +VT DNPRSEDP+ I +I G+ Sbjct: 385 AAARGGELICMFGCGGDRDATKRPLMGAIAEKMADGVVVTSDNPRSEDPQSIIEQIAAGM 444 Query: 437 PGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 K RIE AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 445 KD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497 >gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii DSM 12563] Length = 508 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 234/457 (51%), Gaps = 19/457 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--- 89 ++ +S+ I+ +IFVAI G K+DGH +I AI A AI++ + ++F + Sbjct: 31 IAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKA-AIIIYDNSADKNFIKELEDKHTY 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V N R+ L+ +++ + + + N +A+TGT+GK++ ++ + + + + I Sbjct: 90 VYFIAVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKSVLEANKNKTALI 149 Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + I LTTP I L + V+H+ +EASS L R D + Sbjct: 150 GTIKNMIGKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQALAMDRCDYLNYDT 209 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEVMKRAH 261 FTN+ DH+DYH Q Y AK++LF L KES AI+ D K++ Sbjct: 210 AIFTNITEDHLDYHGDMQNYLKAKLKLFS--LLKESSKNKKLAIVNIDTDNFKQISNYIK 267 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFL-FPLPGEFQVYNALVAA 319 G ++++ G K + K+ ++++K + +GK + + G F + N+L Sbjct: 268 KLGIKMVTYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSMLGRFNILNSLSVL 327 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +D ++ + K+ V GRFE V VDY+HT +SLE ILK R + Sbjct: 328 AYVSEYKLDIEKSIKAMRKVQV-AGRFEIVTKEKHPFIAAVDYSHTPDSLENILKEARKL 386 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 R+IVVFGCGGDRD+ KRPIM IA +DI+I+T DN R+ED +I +I G Sbjct: 387 NPKRVIVVFGCGGDRDRKKRPIMASIAEKYSDISILTADNQRTEDINQIMNDIEKGFKNK 446 Query: 440 IEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 K +R EAI AI+ + D++++AGKGHET I Sbjct: 447 DYKKIIDRKEAIFEAIKEAKENDIVIIAGKGHETYQI 483 >gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pecorum E58] Length = 483 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 29/477 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + DSR + G IF+A G + DG+ F A+ +GA AI+ SS Y+ F + ++ Sbjct: 22 EVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERGAIAIL-SSFYN--PFLSIVQ- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +V + + A++ YG+ E + VTGT+GK++V ++ + S + Sbjct: 78 ----IVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTNGKTTVTYMIKALLDHSHKPAGL 133 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + + TTPS L K + + V++E SS GL+ +R Sbjct: 134 IGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRKAVAMEVSSIGLELNRTAQTSFD 193 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+ DH+D+H T + Y AK +LF + LPK A+I AD Y+ A + Sbjct: 194 VGILTNVTLDHLDFHGTLENYLTAKEKLFSQ-LPKNGCAVINADSPYASRFCSIASS--- 249 Query: 266 RVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGL 321 R ++ G + + + C + + T+ GK + PL G + VYN L A A + Sbjct: 250 RCVTYGIEEAAEY--RACDLQLSLLGTRYTLVHRGKSYLCKSPLIGRYNVYNTLAAIAAV 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + +L LE + GR E V + IY+DYAHT ++L+ +L ++ + S Sbjct: 308 HERSNQELPELLVALENAPLPKGRLEPVFSGP--CPIYIDYAHTPDALDNVLATLKELMS 365 Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 GR+I+VFGCGGDRD+ KR +M ++A + +IVT DNPR EDPE I EI G Sbjct: 366 CQGRVIIVFGCGGDRDRSKRKLMARVA-ERYGFSIVTTDNPRKEDPEVIIHEICEGFTSQ 424 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 + + +R +AI AI M + +DV+++AGKGHET I + S D ++ E+L Sbjct: 425 KYCVEQDRKKAILRAISMASDKDVVLIAGKGHETYQIFKHQTLYFS-DKQVVNEVLA 480 >gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium matruchotii ATCC 14266] gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium matruchotii ATCC 14266] Length = 497 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 221/457 (48%), Gaps = 20/457 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV +S + AG +F A+ G + H A A + + + L + R Sbjct: 28 ITEVGLNSAELPAGALFAAVPGTRV--HGARFAADTAAAAILTDEAGWGLLSAAGETR-- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 P+LVVD+ R L + A+ +YG P + L V G +G S + ++ +G Sbjct: 84 -PVLVVDDVRSVLGVAAAAVYGD-PSSQLTVIGITGTSGKTTTSYMLEAGLLAAGYRVGL 141 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T T I+ LTTP L + ++GVTHV +E SSH L R+ G+K Sbjct: 142 IGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRVLGVKFD 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H T YF+AK F P + + A++ DD + E M +G Sbjct: 202 VAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWG-EKMASVFGSG 260 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R L+ Q + V + Q + G PLPG F V NA +A L Sbjct: 261 VRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAVVAATVPLPGRFNVANAALALALA 320 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+D +L L + V PGR E V + VDYAH +++ +L +R +G Sbjct: 321 DTVGVDMTALLPGLAGVGV-PGRMEVVDCGQDFLAV-VDYAHKPAAIKAVLATVRGQITG 378 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 RI +V G GGDRD KRPIMG A AD +VTDDNPR+EDP IRA+++ G Sbjct: 379 RIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAE 438 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E G+R AIR + D +++AGKGHE ++ Sbjct: 439 VVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI 475 >gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii ATCC 33806] gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii ATCC 33806] Length = 497 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 223/457 (48%), Gaps = 20/457 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV +S + AG +F A+ G + H A A + + + L + R Sbjct: 28 ITEVGLNSAELPAGALFAAVPGTRV--HGARFAADTAAAAILTDEAGWGLLSAAGETR-- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 P+LVVD+ R L + A+ +YG P + L V G +G S + ++ +G Sbjct: 84 -PVLVVDDVRSVLGVAAAAVYGD-PSSQLTVIGITGTSGKTTTSYMLEAGLLAAGYRVGL 141 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T T I+ LTTP L + ++GVTHV +E SSH L R+ G+K Sbjct: 142 IGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRVLGVKFD 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D+H T YF+AK F P + + A++ DD + E M +G Sbjct: 202 VAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWG-EKMASVFGSG 260 Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLC 322 R L+ Q + V + Q+ ++ G PLPG F V NA +A L Sbjct: 261 VRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSVVAATVPLPGRFNVANAALALALA 320 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+D +L L + V PGR E V + VDYAH +++ +L +R +G Sbjct: 321 DTVGVDMTALLPGLAGVGV-PGRMEVVDCGQDFLAV-VDYAHKPAAIKAVLATVRGQITG 378 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 RI +V G GGDRD KRPIMG A AD +VTDDNPR+EDP IRA+++ G Sbjct: 379 RIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAAGSAE 438 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E G+R AIR + D +++AGKGHE ++ Sbjct: 439 VVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI 475 >gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Eubacterium eligens ATCC 27750] Length = 497 Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 145/452 (32%), Positives = 231/452 (51%), Gaps = 30/452 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++SDSR +Q G+ FV I G DGH +I Q + + +V+ Y +D A + S Sbjct: 34 ITSDSRKMQDGYAFVCIKGAVSDGHKYIDQIKDKASVIVVLDGEYEAKDCKAAVVST--- 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT 150 DNTR L+L ++ +YG + + T K + V+ + + G+ + IG Sbjct: 91 ---DNTRLALALMSAAVYGNPDRKLFTIGITGTKGKTTTTYMVKNVLEACGIKTGLIGTI 147 Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TI A TTP I + ++ + + G V +E SS GL R GI G F Sbjct: 148 ETIIGDEAIPAHNTTPESIEIHQSFAKMVDAGCKAVVMEVSSQGLKLDRTAGIMFDIGVF 207 Query: 210 TNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TNL DHI + H++ + Y N K +LF++ I+ ADD +++++++ A C+V Sbjct: 208 TNLEPDHIGPNEHESFEDYLNCKAKLFKQC----KVGIVNADDKHTQDILR---GAICKV 260 Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCI 323 S G I + + +H ++ ++ + + LPG+F VYN+L A + Sbjct: 261 ESYGIGDNADIKAENIELLHEPGKIGLTYDCTGLVNMKVELNLPGKFSVYNSLCAIAITR 320 Query: 324 AIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +D + E L+ HV V GR E V S + +DYAH + +LE IL ++ Sbjct: 321 HFDVDEEALKETLK--HVKVKGRIELVKV-SDDFTLMIDYAHNAMALESILTTLKEYHPH 377 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438 R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+PE I +I GI Sbjct: 378 RLVCLFGCGGNRSKERRYEMGEVSGKLADLTIITSDNPRFEEPEAIIEDIKTGIAKTTGK 437 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ +R EAI+ AIE D++V+AGKGHE Sbjct: 438 HVDITDRKEAIKYAIEHGEPGDIIVLAGKGHE 469 >gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Thermosipho africanus TCF52B] Length = 493 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 154/511 (30%), Positives = 241/511 (47%), Gaps = 48/511 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK++D++ + +N L + E + N +SS+S+ IQ +F+ G D H + Sbjct: 1 MKIKDILRE-----LNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIV 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118 +GA VV IR I VVD +R S+ AS Y K E ++ Sbjct: 56 DDLYKEGANVFVVERE---------IRKYPYIQVVD-SRIAESIIASMFYSKPYEKLITF 105 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL---TTPSPIYLAKALS 175 VTGT+GK++ I G+ G + ++ D TTPS I + + + Sbjct: 106 GVTGTNGKTTSVHLFHHIMHNFGIKGSISG--TVVNDIMGDKFYHPNTTPSAIEIMRNMH 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G + +E SSH L Q+R++ I+ TN+ RDH+D+H+T + Y AK + Sbjct: 164 KTLENGGKYYGMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILN 223 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L P I + +EV + N V ++ IH ++T + Sbjct: 224 LLKPN---GIAVVNHELLQEVKNKNKNIKLVSFGVDSSSDYV-------IH---EITTNW 270 Query: 296 EGKDFDFLFP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 G F P L GE+ +N + IG D V+ + V GRF Sbjct: 271 SGTFFKLDTPYGEKKVASQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRF 330 Query: 347 EFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + + G I VD+AHT ++LE ++ ++R +T GR+I VFG GG D GKRP+MG++ Sbjct: 331 EIIPEAKKLGIEIVVDFAHTPDALEKVILSLRKLTKGRLITVFGAGGQSDIGKRPMMGEV 390 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVL 462 +DI+I+T D+PR EDP KI ++ G +PG + +R EAI TAI + N+ DV+ Sbjct: 391 VSKYSDISIITTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVI 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AG+GHE + K D D+ +I+ Sbjct: 451 LIAGRGHEPYQVFDENHKVPFKDRDVAIDII 481 >gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus sp. PCC 7335] Length = 534 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 165/522 (31%), Positives = 249/522 (47%), Gaps = 48/522 (9%) Query: 1 MKLQDLI-------YKDF--PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG 51 M L+DL+ +DF PE I S W + + +S++S+ I+ G +F+ + G Sbjct: 8 MLLRDLLTGLEASELEDFKLPEAIADHS----HWT-KAVTGLSTNSQAIEPGMVFIGMPG 62 Query: 52 NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111 + DG F AI +GA A +VS + S S+ +L N K + A+ Y Sbjct: 63 TRVDGGEFWQSAIEKGAIAALVSPSVLA---SKPNTSDALVLTTSNIAKVCAELAASFYA 119 Query: 112 KHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPI 168 + + NI+ VTGT+GK++ ++ + + +G T + + TTP I Sbjct: 120 QPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTLYTRWPGYEKIAVHTTPFSI 179 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L L+ V +E SSH L QHR I FTNL +DH+DYH+ YF Sbjct: 180 DLQAELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVFTNLTQDHLDYHKDLDDYFE 239 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 AK LF K AI+ D Y +++++R + + ++ + Sbjct: 240 AKALLFSPDYLK-GHAIVNQKDPYGQKLIERIGKHKTLTYDITDRSADLYTSDLRYSPIG 298 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 TI + F PL G+F + N L A G + +G+ ++ L + VPGR E Sbjct: 299 VSGTIHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVSLDQIVVALPEFKGVPGRMER 358 Query: 349 VGTNS---------------------RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 V ++ + + VDYAHT +SLE LK R GR+I V Sbjct: 359 VQISTGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPDSLENALKAARPFIEGRLICV 418 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----G 443 FGCGGDRD+ KRP MG+IA + +D IVT DNPR+E PE+I +++ GI G +++ G Sbjct: 419 FGCGGDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTESPEQILEDVVAGIEGPLDEEQVIG 478 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R AIR+AI D +V+AGKGHE I+ G +K+ D Sbjct: 479 DRAAAIRSAILNAQPGDGIVIAGKGHEDYQIL--GTEKIHFD 518 >gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 520 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 170/521 (32%), Positives = 248/521 (47%), Gaps = 61/521 (11%) Query: 11 FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 P L +Q+ M +R+ + V+ ++ + G +F A+ G G +A Sbjct: 18 LPALADQVGAV-MAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I +GA A++ +A Q T TP L+ R L A+ +Y HP L V G Sbjct: 77 IERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGQLAAAVY-AHPSERLTVIGI 132 Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLS 178 +G S + V+ + +G ++ IG T I D + LTTP L L+ ++ Sbjct: 133 TGTSGKTTTTYLVESGLRAAGRTAGLIG-TVGIRIDGADIPSALTTPEAPALQALLAAMA 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 Q V V +E SSH L R+DG + G FTNL RDH+D+H T YF AK LF+ Sbjct: 192 EQRVDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNS 251 Query: 239 P-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P + A++ DD +E+ RA +A ++V +G+ H + V + + G Sbjct: 252 PLRAHRAVVCIDDEAGREMAARAGDA----VTVSAEGQPAHWRAV------EVAPLGTGG 301 Query: 298 KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + F + P LPG + V N LVA L A+G+ L + V PGR E Sbjct: 302 QQFTVIDPAGVQHRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRV-PGRME 360 Query: 348 FVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 + G+ + VDYAH +L +L +++ R+ VVFG GG+RD GKR MG Sbjct: 361 EIDA----GQDFLALVDYAHKPGALRAVLSSLKRPDR-RLAVVFGAGGERDPGKRAPMGA 415 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNK 458 A +LAD+ +VTDDNPR EDP IR EI+ G+ +E G+R AIR A+ Sbjct: 416 TAAELADLVVVTDDNPRGEDPAAIRREILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGP 475 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREILG 494 DV++VAGKGHET GE D + +RE +G Sbjct: 476 GDVVLVAGKGHETGQ--RTGEHTRPFDDRVELAEALREAVG 514 >gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermomicrobium roseum DSM 5159] Length = 505 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 162/493 (32%), Positives = 239/493 (48%), Gaps = 47/493 (9%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L DL+ F EL +I + V DSR G +FVA+ G DGH ++ Sbjct: 4 LHDLLSDLFAELRGDDAIM--------VTRVVYDSRQATPGSLFVALRGTHTDGHCYLAD 55 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A ++GA A VV + QD +R+ I V +TR L+ A+R YG HP + L + G Sbjct: 56 AASRGAVAAVVEE-WPSQDVPG-LRT---IARVSDTRVALAAIAARFYG-HPASDLGLIG 109 Query: 123 TSGKSSVAS---FVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSY 176 +G + + I + +G + IG + A D R TTP + + L+ Sbjct: 110 VTGTDGKTTTTFLIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLAR 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + GV VEA+SHGL+ HRLD TN+ ++H+D+H T + Y AK RL E Sbjct: 170 MRATGVAWAVVEATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLE- 228 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ P + AY + ++ A + G R L+ G + A+ + ++ Sbjct: 229 -FVRDRP-----ERAYPRGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMT 282 Query: 295 VEGKDF---------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +G F D L G + V NAL AAG I +GI V+ L++L VPGR Sbjct: 283 DKGTSFRLRYGDQAADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGR 342 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 F + + R+ VDYAHT S E +L R++ GR+IVVFG G+RD+ KR + G I Sbjct: 343 FTPIDCG-QPFRVIVDYAHTPKSFERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAI 401 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLN 457 A LA+ A+ T ++PR EDP+ I AEI G F+ +R AIR A Sbjct: 402 AARLAEFAVFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRAR 461 Query: 458 KQDVLVVAGKGHE 470 D++++ GKGHE Sbjct: 462 PGDIVLLLGKGHE 474 >gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 523 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 149/432 (34%), Positives = 215/432 (49%), Gaps = 39/432 (9%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+ VVD+ R L A+R+YG+ ++ +TGT+GK++ + V+ +G + Sbjct: 93 TGLPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTG 152 Query: 146 QIGP------------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +G T T+++ TTP L L+ ++ GV V +E SSH Sbjct: 153 LVGTVETRTRGRAADGTPTVTTLPSVR--TTPEAPALHALLARMADSGVQTVVMEVSSHA 210 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L R+ GI A FTNLGRDH+D+H + YF AK RLF+ E ++ DD Y Sbjct: 211 LVLGRVGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDGRAAVE---VVDVDDPYG 267 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEG-KDFDFLFPLPGE 309 + + + R ++V QG A T+S G + + LPG Sbjct: 268 RRLAGMLGDR--RAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLPGA 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTS 366 F V NA++A L A+G+ L L + VVPGR E V G+ +V DYAHT Sbjct: 326 FNVANAVLAVALLDAVGVPVETALTGLAET-VVPGRMEPV----DAGQPFVAVVDYAHTP 380 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +++ L +R T GR++ V GCGGDRD GKR MG+ A +D+ +VTDDNPRSEDP Sbjct: 381 DAVATALAALRAATPGRVLTVLGCGGDRDPGKRAAMGEAAARGSDLLVVTDDNPRSEDPA 440 Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 IRA ++ G+P +E G+R AI A+ D ++VAGKGHET V Sbjct: 441 AIRAAMLAGVPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKGHETGQDVAGTLHP 500 Query: 482 MSVDCDIIREIL 493 D ++RE L Sbjct: 501 FD-DRAVLREAL 511 >gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia phytofirmans PsJN] gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phytofirmans PsJN] Length = 515 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 161/476 (33%), Positives = 225/476 (47%), Gaps = 34/476 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPIL 93 +D+R + AG F A + D FI AI +GA A++V + FS I SNT L Sbjct: 33 ADTRSLAAGDAFFAYAVDGADNRPFIEGAIERGAAAVLVQP----EGFSGAIDPSNT--L 86 Query: 94 VVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-T 150 V + AS Y +++L VTGT+GK+S + ++ G IG Sbjct: 87 AVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAIIGTLG 146 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 S + TTP L ++L+ L G V++E SSH L Q R++G FT Sbjct: 147 SGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH T +AY AK RLF P A+I DDA + ++ R ++ Sbjct: 207 NLTQDHLDYHHTFEAYEAAKARLFA--WPDLRAAVINRDDAAGRRLLASTQGH-ARTIAY 263 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAG 320 G K A+ V + G F + G F V N L G Sbjct: 264 GLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLG 323 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIR- 377 +A + + L KL V GR + +G + + +DYAHT ++LE L+ +R Sbjct: 324 ALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLEALRP 383 Query: 378 --TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 T G +I +FGCGGDRD KRP+MG IA +AD +VT DNPRSEDP+ I +I G Sbjct: 384 MATARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQAIIEQIAAG 443 Query: 436 IPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + K RIE AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 444 MKD-ASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497 >gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 505 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 228/466 (48%), Gaps = 42/466 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I E+S DSR + G +F + G K G F A +GA A++ S + D + Sbjct: 30 ENEILEISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSE--RVDDLA--- 84 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144 P L+V + + L ++ LYG +L VTGT+GKS+ ++ I + Sbjct: 85 ---IPQLIVKDAGEACGLASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKC 141 Query: 145 FQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG +D TTP + L+ + +EASSHG++Q R+ G Sbjct: 142 GLIGTIVYNDGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCL 201 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +H+DYH + YF AK LF + + + A I DD Y +++ A+ Sbjct: 202 YDRAVFTNLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKI---ANEF 258 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LP--GEFQV 312 VL + K + A + + + S+ G D FP LP GE+ V Sbjct: 259 APHVLGFSLRQKADN-----AFYGSIRRS-SIRGIIMDISFPDGSTLENVTLPLLGEYNV 312 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLE 370 NAL A+ + ++ D+ ++ + LE VPGR E FV G +DYAHT ++LE Sbjct: 313 LNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFV---EDGPVCIIDYAHTPDALE 369 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L ++ + SGR+ +VFG GG+R + RPI+G IA AD +VT DNPRSEDP I Sbjct: 370 KVLSTVKPLCSGRVWLVFGHGGERFKENRPILGSIAARFADCIVVTMDNPRSEDPRDIAL 429 Query: 431 EIIHGI---PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I GI PG E +R EA+ A++ K DV++V GKG E Sbjct: 430 QIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPE 475 >gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Thermotoga neapolitana DSM 4359] Length = 490 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 149/483 (30%), Positives = 244/483 (50%), Gaps = 45/483 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ +S+ + ++ G +F+ G K D H IP+ I +GA A+VV + Sbjct: 24 EISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIEKGAVAVVVEREVNF--------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V ++R F + AS + ++ L T + + + + Sbjct: 75 DAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGTNGKTTTTLMIYHMLTSMGVKGSA 134 Query: 149 PTSTIS-----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 T+ + ++ +D +TTP I + A+ G ++E SSH L Q R++G++ Sbjct: 135 LTTVLKNVLGKTYYED--ITTPDAITVLSAMKENKDGGGRFFALEVSSHALVQKRVEGVR 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN+ RDH+D+H T + Y AK+ LF+ LL + A++ E + A + Sbjct: 193 FDVGIFTNISRDHLDFHGTFENYLKAKLHLFD-LLKDDGFAVL-------NESLSDALHR 244 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 R ++ G A + + +S EG F P G+F YN Sbjct: 245 RVRKVTFGTSRN--------ANYRLGNIEVSWEGTSFVLETPDGFLKVFTRAIGDFNAYN 296 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMIL 373 A A +G D + E LE V GRFE V + G + VD+AH+ ++LE +L Sbjct: 297 AAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVDFAHSPDALEKLL 356 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 KN+R I+ GR+IVVFG GG+ D+GKRP+M ++ +LAD+ I+T D+PR EDPE+I ++I Sbjct: 357 KNVRKISKGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDDPRGEDPEQIMEDLI 416 Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ ++ +R EAI TA+ + N+ D +VVAG+GHE I+ + +K D ++I Sbjct: 417 KGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAGRGHERYQIIDDEKKIPFHDREVIE 476 Query: 491 EIL 493 EIL Sbjct: 477 EIL 479 >gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FSC200] gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica LVS] gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. holarctica FSC022] Length = 487 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/494 (29%), Positives = 252/494 (51%), Gaps = 27/494 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K ++ + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++A KGHE ++ NG K Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREILG 494 + + +II++ G Sbjct: 463 EYFDEREIIKKYAG 476 >gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Bacillus sp. m3-13] Length = 496 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 155/486 (31%), Positives = 243/486 (50%), Gaps = 46/486 (9%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +Y DFP LS+ + + SDSR + +FV I G DGH +I AI + Sbjct: 15 VYGDFP-----LSV----------SNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEK 59 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGT 123 GA IVV QD + + V +T + L A+ + P I+ VTGT Sbjct: 60 GASVIVV------QDMPEQLVEGICYVHVRDTERALGQLANAFF-DFPSTKLRIVGVTGT 112 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYL 177 +GK++V+S + + ++ G ++ G + TI F N TT + + + L + Sbjct: 113 NGKTTVSSVINNVMRKEG---YKTGLSGTIEIDIDGEKFESKN--TTSDVLTMQRMLKDM 167 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 GVT V +E SSHGL RL G++ G FTNL +DH+D+H T + Y NAK LF +L Sbjct: 168 VEAGVTDVVMEVSSHGLVLGRLAGVEFQNGVFTNLTQDHLDFHGTMENYKNAKGLLFAQL 227 Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 + K+ AI+ DDA +K+ ++ G R+++ G + + +++ NK + Sbjct: 228 GQDMRKDKAAILNVDDAATKDYVQMT---GARIITYGIKNEADFKAREIQFFENKTSFVL 284 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +F+ P GEF VYN L + G+ +L HL + GR + + T Sbjct: 285 ETNFGEFELEIPFVGEFNVYNILSVICVLWDKGMPFERILNHLRETTPPSGRMQTLETGD 344 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + I +DYAHT +++ L +IR + +II + G GG RD+ KRP MG+IA + ++ Sbjct: 345 KRNVI-IDYAHTEDAIGKALDSIRMFSKHKIISIIGTGGGRDKDKRPKMGRIATEKSEYV 403 Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I T DNP E E+I + G F +R +AI A+E+ + DV+++AGKGHE Sbjct: 404 IFTTDNPLDEPGEEIVQGMAEGAVHENFECIPDREQAIIRAVEIAGEGDVILIAGKGHEN 463 Query: 472 VHIVTN 477 ++ N Sbjct: 464 YQLIGN 469 >gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella cf. novicida Fx1] Length = 487 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 150/494 (30%), Positives = 250/494 (50%), Gaps = 27/494 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++ S Q+F R + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 SLVLTDS----QEFEDQKR----VFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KNYRNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K ++ + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDISKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++AGKGHE ++ NG K Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREILG 494 + + +II++ G Sbjct: 463 EYFDEREIIKKYAG 476 >gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. holarctica OSU18] Length = 492 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 148/494 (29%), Positives = 252/494 (51%), Gaps = 27/494 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 67 -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + ++ Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K ++ + G+ ++ Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 292 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 408 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++A KGHE ++ NG K Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 467 Query: 481 KMSVDCDIIREILG 494 + + +II++ G Sbjct: 468 EYFDEREIIKKYAG 481 >gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brachyspira hyodysenteriae WA1] Length = 508 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 150/484 (30%), Positives = 243/484 (50%), Gaps = 20/484 (4%) Query: 9 KDFPELINQLSI-----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 K F ELI + + +I + DSR I+ ++FVAI G K+DGH +I A Sbjct: 2 KYFKELIKNYKVSKESQLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESA 61 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 I A +I++ + ++F ++ N + V N R+ L+ +++L+ + + N + Sbjct: 62 INNKA-SIIIYDNTADKEFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTI 120 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177 +TGT+GK++ ++ + + + + IG + I LTTP I L Sbjct: 121 GITGTNGKTTTTYLLKSVLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKS 180 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G++H+ +E+SS L +R D + FTN+ DH+DYH Q Y AK++LF L Sbjct: 181 LKKGISHIVMESSSQALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLL 240 Query: 238 LPKESP---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTI 293 AI+ D K++ G ++++ G K + KV ++++K + Sbjct: 241 KESSKKKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTEYEF 300 Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +GK + + G F + N+L +D ++ + K+ V GRFE V Sbjct: 301 YAKGKLISKVKLSMLGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQV-EGRFEIVTKE 359 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDY+HT +SLE IL + + R+I VFGCGGDRD+ KRPIM +IA ADI Sbjct: 360 KHPFIVAVDYSHTPDSLENILVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKYADI 419 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AI+T DN R+ED +I +I G K +R EAI A++ + D++++AGKGHE Sbjct: 420 AILTTDNQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKEAKENDIIIIAGKGHE 479 Query: 471 TVHI 474 T I Sbjct: 480 TYQI 483 >gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS183] gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica BA175] Length = 499 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 224/460 (48%), Gaps = 19/460 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83 + N+++ DSR I+ G +F+A+ G+K DG FI +A+ GA A++V + + Q S Sbjct: 18 QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLGAAAVLVHTDDADQHGKVLHS 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138 I +R+ ++ A R H ++ +TGT+GK+S + + Q+ Sbjct: 78 DNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G + D+ TT I L + L +QG + ++E SSHGL Q Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH ++Y AK LF ++ DDA + Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FNTLGHGLLNLDDAVGASWL 255 Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + ++ G+Q + K T+ + + PL G F + N Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVWPEDETEIHSPLLGAFNLSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G D + E ++ L V GR E T + + VDYAHT +++E L Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPDAIEQALN 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R +G + VFGCGGDRD+GKRP+MGK A AD +VT DN RSEDP +I +II Sbjct: 375 ALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434 Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ + + +RI AI+ + + DV+++AGKGHET Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474 >gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM 30120] Length = 495 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 157/496 (31%), Positives = 238/496 (47%), Gaps = 20/496 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L L+ F + + E++ DSR AG +F+A+ G++ DG +IPQAIAQG A++ Sbjct: 6 LCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAVIA 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + ++ P++ +++ LS A Y P + + + G +G + + Sbjct: 66 EAHGEAEEGEIRFVHGVPVIYLNDLNNRLSALAGEFY-HQPSSQMKLVGVTGTNGKTTTT 124 Query: 134 QQICQRS---GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 Q I Q + G +S +G I + TT S + + L+ L ++ T ++E Sbjct: 125 QLIAQWAKGLGETSAVMGTVGNGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEV 184 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSHGL Q R+ ++ A FTNL RDH+DYH Y AK LF K II AD Sbjct: 185 SSHGLVQGRVAALQFDAAVFTNLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQ--IINAD 242 Query: 250 DAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 D + ++R A C V + +QG ++ V + + + F Sbjct: 243 DEVGLKWLQRLPQA-CAVTMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFES 301 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G F V N L+A + + +L L V GR E + + VDYAH Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLEKLLATTNALMPVCGRMEVFSVTGKP-TVVVDYAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T ++LE L R G++ VFGCGGDRD+GKRP+MG A AD ++TDDNPRSED Sbjct: 361 TPDALEKALAAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSED 420 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P I +I+ GI + R EA+ I + DV++VAGKGHE I+ G ++ Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKGHEDYQII--GSRR 478 Query: 482 MSV-DCDIIREILGLI 496 + D + +LG++ Sbjct: 479 LDYSDRLTVARLLGVM 494 >gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 513 Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 159/514 (30%), Positives = 254/514 (49%), Gaps = 45/514 (8%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I +S DSR A F+A+ G+ DG+ +I +A+G Sbjct: 2 KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGT 61 Query: 69 EAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124 + I+ + S+ S + I V+N ++ LS A Y K P+NI+ +TGT+ Sbjct: 62 KLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S++S++ Q+ + S +G I Q++ TT + L + +S + Sbjct: 122 GKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTIS--DYENYQ 179 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 ++ +E SSH LDQ R +G+ F+NL DH+DYH+T YF AK +LF+ Sbjct: 180 NLVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKNLKK 237 Query: 244 AIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKF-IHLKKVCAIHNKQQVTI---SV 295 A+I DD Y +++ + + + R S+ K+ I + V K + I S+ Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297 Query: 296 EG--KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL---VLEHLEKLH 340 E FD L GEF + N GL +A DS+ +LE++ KL Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNL----GLSLAALDDSSTRDQLLENISKLK 353 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E + G +I +DYAHT ++LE L+ + + +FGCGG+RD KRP Sbjct: 354 PVKGRMEVIAL-VNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRP 412 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEM 455 IM +IA A+ +VT+DN R E E I +I G FI+ +R +AI+ IE Sbjct: 413 IMAQIAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFID--SREKAIKYTIEN 470 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 DV+++AGKGHE ++ NG K+ + ++I Sbjct: 471 SKANDVILLAGKGHE-CYLDKNGIKEYFDEREVI 503 >gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 508 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 152/476 (31%), Positives = 237/476 (49%), Gaps = 32/476 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSATIRS 88 + +DSR ++ +FV E ++ A +G + ++VS +L F + S Sbjct: 27 IWADSRKLKPNDVFVLPEDKAETIESYLQMAYDKGVKVVLVSKRNLKLKNLDLFPTILES 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + V AS+L G + I+ +TGT+GK+S+ + I ++ Sbjct: 87 EDALGDVHGK------MASQLLGNPSKKLKIIGITGTNGKTSLTFILFHIAKKLKKKVAL 140 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I ++ TTP L L + +GV +V +E SSHGL R+ GI++ Sbjct: 141 IGTVQIQILDRILESGYTTPDASSLNLLLREMLDEGVEYVFMEISSHGLKLGRVAGIEIT 200 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+D+H++ + YF +K ++F E+ K ++ D ++ +++R Sbjct: 201 CAGFTNLTQDHLDFHESMEDYFESKFKIFQLLEQSSVKNKFGLVAGDVSFGDRMIQRIRE 260 Query: 263 AGCR--VLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + + +G G+F + L H K++ +E + L G F V+ Sbjct: 261 SKLKTPIYILGKSGEFHYSNTKLSLLGSEYRFHKKEKNLPFIEVRSIRT--NLLGNFNVF 318 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N A + +G V+ +E++ VPGRF+ + + VDYAHT ++LE IL Sbjct: 319 NTAFAMSIAYELGFPWDEVVTAIEEIPTVPGRFQVIPYPDKTRIAVVDYAHTPDALENIL 378 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 K+ I ++I +FGCGGDRD+ KRP M KIA LAD +T DNPR+EDPE I EI Sbjct: 379 KSCVEIRPKQLICLFGCGGDRDRTKRPQMAKIAETLADFVFLTSDNPRTEDPESILDEIE 438 Query: 434 HGIP-GF--IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 G GF EK +R AI+ A+ +L K +LVVAGKGHET I+ EK VD Sbjct: 439 SGFSRGFKRYEKITDRRVAIQRAVSLLEKDGILVVAGKGHETYQII-GKEKTNFVD 493 >gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MSSA476] Length = 494 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 238/472 (50%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ C V S G + + K N Q+ S++G FDF+ P Sbjct: 246 EYLRTV--TPCEVFSYGIDEEAQFMAK-----NIQE---SLQGVSFDFVTPFGTYSVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6578] Length = 496 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 152/471 (32%), Positives = 231/471 (49%), Gaps = 45/471 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +++G +F A+ G DGH F+ A+ +GA A+V + R Sbjct: 21 LAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVVHERELP------SYREGVVY 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V N R+ LS ++ YG HP ++ VTGT GKSS F+ Q+ + SG+ I Sbjct: 75 LRVKNARRALSAASAVFYG-HPSQDLEVIGVTGTDGKSSTTYFIYQLLRASGVKVGCIS- 132 Query: 150 TSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDGIK 203 T+ S+ + R +TP ++ AL+ + G TH VEA+SHGL RL+ ++ Sbjct: 133 TALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARLEDVR 192 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G TN+ +H+++H + + Y K RLF L P+E A++ DD S + +R A Sbjct: 193 FTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGL-PEEGKAVLNLDDPSSGFLAERT-RA 250 Query: 264 GCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 G +G + +V C +H ++ + + V P PG F V N Sbjct: 251 GVWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWV---------PFPGRFNVEN 301 Query: 315 ALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 L A A + L H+ L VPGR E V + + VDYAHT + E +L Sbjct: 302 VLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAFEKLL 360 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +R GR+IVVFG G+RD+ KRP+ G++A A++ ++TD++PR ED I EI Sbjct: 361 PFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAILREIA 420 Query: 434 HGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 G G +E +R EAI A+ M + D ++ GKGHE + G Sbjct: 421 AGCEGLMEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEG 471 >gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus ATCC BAA-974] Length = 522 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 161/483 (33%), Positives = 238/483 (49%), Gaps = 32/483 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATI 86 +++ V+ ++ Q G +FVA+ G K G + P A A+GA A++ +A + L+D Sbjct: 36 RVSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVG--- 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 +L R L ++ +YG + V T + ++ + Q +G + Sbjct: 93 --EIAVLTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMT 150 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T I S + + TTP L+ ++ GV V +E SSH LD R+DG + Sbjct: 151 GVIGTVETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTR 210 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAY-------SKE 255 A FTNL +DH+D+H ++YF AK +LFE P A++ DDA+ ++E Sbjct: 211 FAAAGFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVARE 270 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314 R A V + G + + L + H Q+V + G+ F L G N Sbjct: 271 GAGRGAQAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAAN 330 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEM 371 AL+A GL A G++ L VPGR E V G+ + VDYAH +L Sbjct: 331 ALLALGLAEAAGLEVGPELLRGWASISVPGRLERVDA----GQDFLAVVDYAHKPEALVK 386 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L +R T GRI VV G GGDRDQGKRPIMG+ A++ +VTDDNPR+EDP IRA+ Sbjct: 387 VLHALREHTEGRIAVVVGAGGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQ 446 Query: 432 IIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 ++ G E G+R EAI A+ D ++VAGKGHET + NG K+ D Sbjct: 447 VLAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKGHETYQEI-NGVKQPFDDR 505 Query: 487 DII 489 +++ Sbjct: 506 EVL 508 >gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 516 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 153/459 (33%), Positives = 227/459 (49%), Gaps = 25/459 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ ++ ++ G +F A+ G+ G + +AI +GA A V++ A + + A+ S Sbjct: 38 VTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAVA-VLTDAAGVAEMGASA-SA 95 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P LV R L A+ +YG E ++ +TGTSGK++ V+ + +G ++ I Sbjct: 96 VPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTTTYLVEAGLRAAGRTAGLI 155 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + LTTP L + ++ +GV V +E SSH L R+DG Sbjct: 156 GTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVMEVSSHALALGRVDGTGFAV 215 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGC 265 G+FTNL RDH+D+H T YF AK +LF+ P + ++ DD + + RA G Sbjct: 216 GAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVVVCVDDEAGRAMAMRAMQGGA 275 Query: 266 RVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++V + H + + I +Q I G LPG + V N LVA + Sbjct: 276 AAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHRVGIRLPGHYNVANCLVALAI 335 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378 A+G+ L V PGR E + G+ + VDYAH +L +L ++ Sbjct: 336 LDAVGVSPEQAAPGLLDTRV-PGRMEEIDC----GQDFLALVDYAHKPGALRAVLTSL-A 389 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 R+ VVFG GG+RD GKR MG A +LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 390 RPGRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGAAA 449 Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R AI A+ DV++VAGKGHET Sbjct: 450 GGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKGHET 488 >gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria seeligeri FSL S4-171] Length = 440 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/405 (32%), Positives = 205/405 (50%), Gaps = 32/405 (7%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V +T++ +++ A+ YG + ++ +TGT+GK++V+ V+QI + SG + IG Sbjct: 24 PVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTVSHLVEQIVRESGEQTGLIG 83 Query: 149 PT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 I + + TTP + L + + +GV+ +E SSH L Q R+ G Sbjct: 84 TMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVMEVSSHALVQGRVYGSDYDVA 143 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRAHN 262 F NL +DH+DYH T + Y AK LF +L +P A++ ADD +E ++ Sbjct: 144 VFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKIAVLNADD---EESVRMQTA 200 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVY 313 V++ G K A + I+ G F+ P + G F VY Sbjct: 201 TAAHVITFGI--------KENADFRATNIEITSHGSTFNLTTPAGKFKLKIKMIGNFSVY 252 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A A+ I + +E + V GRFE V + + VDY+HT + L +L Sbjct: 253 NVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNA-GQDFPVIVDYSHTPDGLLNVL 311 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + I + R+ VV GCGGDRD+GKRP M KIA+ A + T DNPRSE+P I ++I Sbjct: 312 QTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATNPVFTSDNPRSENPRTIIEDMI 371 Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G+P ++ NR +AI+ AI DV+++AGKGHE I+ Sbjct: 372 KGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGHEDYQII 416 >gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758] Length = 518 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 159/522 (30%), Positives = 257/522 (49%), Gaps = 47/522 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +++K + Q+ P E +I ++ +S+ + +FV I G++ DGH +I Sbjct: 1 MKL-SVLFKRIQHAVIQM---PELEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYI 56 Query: 61 PQAIAQGAEAIVVSSAYS---LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 +A GA I++ S + F N +++V +TR+ L+ SR++ P + Sbjct: 57 EEACNLGASCILIEKLVSGGRMLKFP----ENVAVVLVKDTREALAGI-SRIWFGSPADK 111 Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173 ++ VTGT GKS+VA ++++ + G IG + + + ++ TTP + Sbjct: 112 LKVIGVTGTKGKSTVAVMIREMLESLGQKCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSY 171 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 + + G + +E SS G+ QHR+DGI FTN G DHI H + Y K Sbjct: 172 FAKMVEAGCHYAVMEVSSQGIKQHRIDGIWFEIAVFTNFGEDHIGPGEHASLGEYRYYKS 231 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQG----KFIHLKKVC 283 LFE+ I DDA + +R + CR +G + +K+ Sbjct: 232 CLFEQC----RIGIGNLDDAQCSYMFQRKCCTKYGFTCREEEGQERGFRNSHVLTAEKIS 287 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLH 340 + ++ D + LPG+F VYNAL A +G + + VL+HL Sbjct: 288 FLMEGGELKTVFYADDRKYELALPGKFNVYNALAALQTVSCLGFEREEAGDVLKHL---- 343 Query: 341 VVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 VV GR E V G N Y+DYAH + SL +LK +R RI++VFGCGG+R + Sbjct: 344 VVRGRMERVDAGENIL---CYIDYAHNAMSLAKVLKMLRIYEPERILLVFGCGGNRAGSR 400 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIE 454 R MG++A +LA++ I+T DNPR E+P KI A++ GI + +R EA+ A+E Sbjct: 401 RSGMGRVAGELANLTIITSDNPRWEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVE 460 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 M + D+L++AGKGHE + M D +++R+ + L+ Sbjct: 461 MARQGDILLIAGKGHENYQEIQGVRYPMD-DRELVRKAVRLV 501 >gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f] Length = 527 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 239/461 (51%), Gaps = 34/461 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR- 87 ++ V+ DSR + G ++ A+ G G F A+ + L D S R Sbjct: 58 RVTGVTHDSRAVIPGDLYAALPGANVHGADFA-------VGAVAAGAVAVLTDPSGAARL 110 Query: 88 ---SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141 P+LV D+ R+ L+ A+ +YG HP +L VTGT+GK++ A + + +G Sbjct: 111 AGRVAVPVLVTDDPRRDLAPVAAWVYG-HPSQALTLLGVTGTNGKTTTAFLLDAGLRAAG 169 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ +G T I + TTP L + + +GVT +E SSH L QHR+D Sbjct: 170 HTTGLLGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVD 229 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 ++ +FTNL +DH+D+H T + YF AK LFE K+ A+I DD + + + ++ Sbjct: 230 ALRFTGAAFTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKD--AVICVDDDWGRRLARQR 287 Query: 261 HNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +A R SV G + V + +G D LPG F + NAL A Sbjct: 288 PDA--RTYSVTGADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGAL 345 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376 L A G+ + E + L VPGR E V GG+ + VD+AHT +++ +L+ + Sbjct: 346 ALLAATGVPLEVAAEGISSLTGVPGRMERV----DGGQPFLAVVDFAHTPDAVVTLLEAV 401 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R + +GR+IVV GCGGDRD+GKRP+MG A LAD+A+ T+DNPRSEDP I +I+ G Sbjct: 402 RPLVTGRVIVVLGCGGDRDRGKRPLMGAAAARLADLAVFTNDNPRSEDPAVILDQIVAGA 461 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G F+ + +R AI A+ D +VVAGKGHET Sbjct: 462 REVAGAGRFVVEPDRAAAIALAVAAAGPADAVVVAGKGHET 502 >gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. MCS] gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. KMS] gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. MCS] gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. KMS] Length = 508 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 149/398 (37%), Positives = 205/398 (51%), Gaps = 26/398 (6%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQI 147 P+LV + R L AS +YG HP L V G +G S + V+ + +G + I Sbjct: 95 PVLVHPDPRAVLGAVASTVYG-HPSQHLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLI 153 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I Q + LTTP L L+ + QGV V +E SSH L R+DG+ A Sbjct: 154 GTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAA 213 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTNL RDH+D+H T + YF+AK LF+ + + A++ DD + + RA Sbjct: 214 GGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVVCVDDDAGRAMAIRA----G 269 Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321 R ++V G+ + V A+ Q ++V+ G LPG + V N ++AA L Sbjct: 270 RAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGLRIALPGHYNVANCVLAAAL 329 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379 A+ + L + VPGR E V RG VDYAH +L +L+ +R Sbjct: 330 LDAVDVSPEQAAPGL-RTATVPGRLEAV---DRGQDFLALVDYAHKPGALRAVLETLRGQ 385 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 GRI VVFG GG+RD GKR MG++A +LAD+ +VTDDNPR EDP IRA I+ G Sbjct: 386 GKGRIAVVFGAGGNRDAGKREPMGRVAAELADLVVVTDDNPRDEDPATIRAAIMAGARAA 445 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R EAI A+ DV++VAGKGHET Sbjct: 446 GGGADVVEIGDRREAIAHAVRWARPGDVVLVAGKGHET 483 >gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 490 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 234/475 (49%), Gaps = 32/475 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+ + G +F+A+ G+ E G + A+A+GA A++V + L A R + V Sbjct: 31 DADRVTPGSLFIAVPGHVEGGPGAVAPALARGAAAVMVDADCVL---PAAARDACVVRVA 87 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 D TR +L +R +G+ +++A+TGT+GK+SV+ V+ + + S + G T Sbjct: 88 D-TRTAAALVTARYFGEPGRQMDVVAITGTNGKTSVSYMVESVLRIS--EGTRAGVIGTA 144 Query: 154 SSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 S D LTTP L L + +GV V +EA+S GL HR+D + Sbjct: 145 GSRIGDEPIPMPPSVLTTPETPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDV 204 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G FTNL +DH+D H T + Y +AK+RLF+ L A++ DD + A Sbjct: 205 GVFTNLSQDHLDDHGTMENYRDAKLRLFQGLCRH---AVVNVDDPVGAGIQAMMPGA-VT 260 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ + + + + T+ EG+ + P PG F V NAL C +G Sbjct: 261 TYALDAEADY-RATDLVVDAAGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLG 319 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D ++ LE++ +PGRFE + T + G + VDYAH+ +SL +L +R GR++ Sbjct: 320 HDLTGLVAALERMPQIPGRFERL-TTAAGTSVIVDYAHSPDSLNKVLGTVRGFARGRVVT 378 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFGCGGDRD KR MG IA +D+ ++T DNPR EDPE I ++ PG G Sbjct: 379 VFGCGGDRDTTKRAEMGTIAGTHSDLCVLTSDNPRHEDPEDIMDQV---APGIAVTGTPY 435 Query: 447 EAI-------RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 E I A+ D++++AGKG E V + S D +RE+ G Sbjct: 436 ERIADRHAAIAFALSAAGPDDIILIAGKGSEPHQTVGDTLIPFS-DMATVRELTG 489 >gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Psychromonas sp. CNPT3] Length = 491 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 151/464 (32%), Positives = 235/464 (50%), Gaps = 32/464 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR I+ +FVA+ G + DG FI +AI QGA ++ + +S + + + Sbjct: 20 VQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIKMHAQ 79 Query: 90 TPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V +S A + Y K+ ++ +TGT+GK+++AS + Q + + Q+ Sbjct: 80 VAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVKNAQM 139 Query: 148 GPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G F Q + TT I + L+ QG + +E SSHGLD R+ + Sbjct: 140 GTIGN-GLFGQLKSSLNTTLDAISIFAELASYQQQGAQYTLMEVSSHGLDLGRVQALPFY 198 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 + FTNL RDH+D+H T Y AK RLF E ++ II DD + + +A Sbjct: 199 SAIFTNLTRDHLDHHGTMACYGLAKKRLFSEYSLQQR--IINIDDPTGEMWLSEFSDA-- 254 Query: 266 RVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAG 320 +S G Q ++ +K++ + KQ + + + D P G F V N ++A Sbjct: 255 --ISYGKATNQKQYFTVKEI--FYQKQGICFNFQSSWGDGQISAPFYGHFNVQN--LSAV 308 Query: 321 LC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 LC +A G + + KL+ VPGR E + + VDYAHT ++LE L+ + Sbjct: 309 LCQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDITFVVDYAHTPDALEKALQALHQ 368 Query: 379 ITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 + G +I +FGCGGDRD GKRP M K+A LA I+ DDNPR+E I +I + Sbjct: 369 HSQKGELICLFGCGGDRDTGKRPEMAKVAEKLASQVILVDDNPRTEQASVIMQDI---LA 425 Query: 438 GFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 GF +K +R EAIR A++ + D+++VAGKGHE I+ Sbjct: 426 GFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKGHEDYQII 469 >gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. CCGE1002] Length = 520 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 159/483 (32%), Positives = 229/483 (47%), Gaps = 43/483 (8%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +D+R + AG F A + D FI AI +GA A++V A++ P L Sbjct: 33 ADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGFTGKLDASVTHAVPAL- 91 Query: 95 VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + AS Y + +LAV TGT+GK+S + +V G +G T Sbjct: 92 ----NELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGTLGT 147 Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + TTP L ++L+ L G V++E SSH L Q R++G FT Sbjct: 148 GFVGQLVHTG-FTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFT 206 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVL 268 NL +DH+DYH T +AY AK RLF P+ A+I DDA + ++ R H R + Sbjct: 207 NLTQDHLDYHGTFEAYETAKARLFA--WPELRAAVINRDDAAGRRLLASTRGH---ARTI 261 Query: 269 SVGYQGK--------------FIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVY 313 + G +G+ ++ V A +S + + D G F V Sbjct: 262 AYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDWGNADVEVQTLGLFNVS 321 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371 N L G+ +A + L L KL V GR + +G + + +DYAHT ++LE Sbjct: 322 NLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 381 Query: 372 ILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L+ +R I + R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP I Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSEDPLSI 441 Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +I G+ K R+E AI AI ++DV+V+AGKGHE + G+K+ Sbjct: 442 IEQIAAGMQD-ASKARRVEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFS 499 Query: 485 DCD 487 D D Sbjct: 500 DQD 502 >gi|218671408|ref|ZP_03521078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli GR56] Length = 222 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/193 (51%), Positives = 128/193 (66%) Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 H ++V +KQ I + + F+ PL G+ QV NALVAAGL ++ G++ + + LE Sbjct: 3 HAERVEHFRHKQMAEIHIGDEIFEVDIPLAGDLQVANALVAAGLAMSTGVEPNVAMAALE 62 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 KL GR E VG G YVDYAH ++LE +L ++R T+GR++VVFGCGGDRD+G Sbjct: 63 KLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRG 122 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457 KRPIMG+IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR A+ ML Sbjct: 123 KRPIMGEIACRLADVVIVTDDNPRSEEPAAIRAEIMAAAPCASEIADRATAIREAVAMLT 182 Query: 458 KQDVLVVAGKGHE 470 D L+VAGKGHE Sbjct: 183 SGDTLIVAGKGHE 195 >gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp. tularensis FSC033] Length = 484 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 7 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 67 -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + ++ Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 234 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K ++ + G+ ++ Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFN--GRFVGEYTT 292 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 293 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 348 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 349 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 408 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++A KGHE ++ NG K Sbjct: 409 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 467 Query: 481 KMSVDCDIIREI 492 + + +II+ + Sbjct: 468 EYFDEREIIKNM 479 >gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium subsp. avium ATCC 25291] gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium avium 104] Length = 520 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 171/521 (32%), Positives = 247/521 (47%), Gaps = 61/521 (11%) Query: 11 FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 P L +Q+ M +R+ + V+ ++ + G +F A+ G G +A Sbjct: 18 LPALADQVGAV-MAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEA 76 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I +GA A++ +A Q T TP L+ R L A+ +Y HP L V G Sbjct: 77 IERGAVAVLTDAAGVAQ---LTGGRTTPTLLHPRPRSVLGELAAAVY-AHPSERLTVIGI 132 Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLS 178 +G S + V+ + +G ++ IG T I D + LTTP L L+ ++ Sbjct: 133 TGTSGKTTTTYLVESGLRAAGRTAGLIG-TVGIRIDGADIPSALTTPEAPALQALLAAMA 191 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 Q V V +E SSH L R+DG + G FTNL RDH+D+H T YF AK LF+ Sbjct: 192 EQRVDTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNS 251 Query: 239 P-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P + A++ DD +E+ RA +A ++V +G+ H + V + + G Sbjct: 252 PLRAHRAVVCIDDEAGREMAARAGDA----VTVSAEGQPAHWRAV------EVAPLGTGG 301 Query: 298 KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + F + P LPG + V N LVA L A+G+ L + V PGR E Sbjct: 302 QQFTVIDPAGVQHRAGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRV-PGRME 360 Query: 348 FVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 + G+ + VDYAH +L +L +++ R+ VVFG GG+RD GKR MG Sbjct: 361 EIDA----GQDFLALVDYAHKPGALRAVLSSLKRPDR-RLAVVFGAGGERDPGKRAPMGA 415 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNK 458 A +LAD+ +VTDDNPR EDP IR EI+ G IE G+R AIR A+ Sbjct: 416 TAAELADLVVVTDDNPRGEDPAAIRREILAGATESGCAAEVIEIGDRRAAIRHAVAWAGP 475 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD-----CDIIREILG 494 DV++VAGKGHET GE D + +RE +G Sbjct: 476 GDVVLVAGKGHETGQ--RTGEHTRPFDDRVELAEALREAVG 514 >gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni KF-1] Length = 501 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 162/473 (34%), Positives = 243/473 (51%), Gaps = 49/473 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R E+ +DSR ++AG FVA G DG ++ QA+AQGA A++V A LQ F Sbjct: 19 RSRVQGELQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVE-ADGLQAFDL- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQ------I 136 S I + + L A + + HP ++LAVTGT+GK++ A ++ + Sbjct: 77 --SGDRIASLKGLKAATGLIADQWFA-HPSGELDVLAVTGTNGKTTTAWWLAHALSKVTL 133 Query: 137 CQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 R+G + + +G + S +TTP P+ L +A + QG+ ++EASS G Sbjct: 134 NTRTGCALVGTLGVGVPPALESTG----MTTPDPVLLQRAFRSYADQGLAACAIEASSIG 189 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +HRLDG K+ FTN +DH+DYH + AY+ AK +LF+ P A++ DDA+ Sbjct: 190 IVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFD--WPGLPTAVVNIDDAHG 247 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R V SV QG + K + T+ G L G++ V Sbjct: 248 ARLWARLQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNV 307 Query: 313 YNAL--VAAGLCIAIGIDSAL-VLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 N L +AA C+ + ++ A+ HLE VPGR + + + G+ + VDYAHT + Sbjct: 308 SNLLGVLAALRCLGLTLEEAVAACAHLEP---VPGRMQQI---VKPGQPLVAVDYAHTPD 361 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L+ ++ G++ VFGCGGDRD KRP+MG+ A AD VT DNPRSE Sbjct: 362 ALEKALRALQPAARQRQGKLWCVFGCGGDRDNSKRPLMGQAAQANADGVFVTSDNPRSEV 421 Query: 425 PEKIRAEIIHGIPGFIEKGNRIE-------AIRTAIEMLNKQDVLVVAGKGHE 470 PE I +I+ G ++ G + AI AI + +DV+++AGKGHE Sbjct: 422 PESIIDQILAG----MQAGETLHVQADRAAAIAQAIARADARDVVLIAGKGHE 470 >gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis FSC198] gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. tularensis NE061598] Length = 479 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/492 (29%), Positives = 250/492 (50%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I + DSR +FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHEFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++A KGHE ++ NG K Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREI 492 + + +II+ + Sbjct: 463 EYFDEREIIKNM 474 >gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella oneidensis MR-1] Length = 491 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 223/460 (48%), Gaps = 23/460 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ +++ DSR I+ G +F+A+ G+K DG FI +A+AQGA A++V + + + Sbjct: 16 EQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDNPQEQGKVIV 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLY---GKHPENILAVTGTSGKSSVASFVQQICQR-SGL 142 + K +S A+ Y H I+ +TGT+GK+S + Q+ SG Sbjct: 76 AEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGKTSTSQLCAQLVTLLSGK 135 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ++ + + D+ TT I L + L +++GV ++E SSHGL Q R+D + Sbjct: 136 AAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTCAMEVSSHGLVQGRVDAV 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL RDH+DYH + Y AK LF ++ DD + N Sbjct: 196 PFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFR--FDSLRHGLLNLDDPIGGAWLAELKN 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYN 314 ++ G I K A + K Q T+ + D PL G F + N Sbjct: 254 VPAKIW-----GFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISSPLLGAFNLSN 308 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G+D + + L V GR E T + + VDYAHT +++E L Sbjct: 309 LLAALSALYLQGMDMRALAAKVPYLVPVAGRMERF-TTADNITLVVDYAHTPDAIEQALN 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R +G + VFGCGGDRD+GKRP+MG+ A AD +VT DN RSEDP +I +II Sbjct: 368 ALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRIMVTSDNARSEDPNQIITDIIQ 427 Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ + + +R+ AI+ + DV+++AGKGHET Sbjct: 428 GLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHET 467 >gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila caviae GPIC] Length = 483 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 158/491 (32%), Positives = 243/491 (49%), Gaps = 59/491 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR++ G IF+A G + DG+ F P AI GA AI S + S Sbjct: 22 EVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENGAIAIASSIYNPFLSVVQIVSS 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 N P L + + K+ + + +L I+ VTGT+GK++V+ ++ + S IG Sbjct: 82 NLPQLEAELSAKYYNYPSKKLC------IVGVTGTNGKTTVSHLIKTLFDGCNKPSGLIG 135 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI +NR+ TTP L K L+ + +T +E SS GL RL + Sbjct: 136 ---TIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRLTSAVMEVSSVGLVLERLAEVDF 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+ DH+D+H + + Y NAK++LF + LP A++ D +Y+ ++ Sbjct: 193 DVGVLTNITLDHLDFHGSFEEYINAKLKLFSK-LPATGLAVVNGDLSYASRFLEMT---- 247 Query: 265 CRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314 Q + I C A + + S G DFD ++ PL G+ VYN Sbjct: 248 --------QAQPITYGIECPADYRAMHLRSSPFGTDFDLVYRGESLPCRLPLIGKHNVYN 299 Query: 315 ALVAAGL----CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 L A + C D ++ + GR E V + IY+DYAHT ++LE Sbjct: 300 ILAAIAVAHQHCNG---DLQQLISLAANVESPRGRLEPVFSGP--CPIYIDYAHTPDALE 354 Query: 371 MILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + K + + G++IVVFGCGGDRDQ KR IM ++ ++ A+VT DNPR EDPE Sbjct: 355 NVCKTLHALLPEQGKLIVVFGCGGDRDQSKRQIMAEV-VERYGFAVVTSDNPRGEDPE-- 411 Query: 429 RAEIIHGI-PGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 EII I GF+++ +R +AI A+ + + +D+++VAGKGHET I + Sbjct: 412 --EIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETYQIFKHQTIAF 469 Query: 483 SVDCDIIREIL 493 D +I+RE+L Sbjct: 470 D-DKEIVREVL 479 >gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 512 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 155/494 (31%), Positives = 235/494 (47%), Gaps = 39/494 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL +L+ + E + I Q + ++N V DSR + G IF + G + DGH F Sbjct: 1 MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 A+ +GA A+ V+ + P LV + R F+ A+ LYG ++ + Sbjct: 61 RDAVDRGAVALCVARPLA--------EVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMI 112 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176 +TGT+GK++ + I + G + +G +F +R TTP + L Sbjct: 113 GITGTNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADR-TTPEGADVQWFLKR 171 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + +EASSHGL Q R++G + G FTNL +H+D+H T+ AYF+AK LF Sbjct: 172 MRDNSCQACVMEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNR 231 Query: 237 LLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + + A D ++ R H G RV+ ++ + +T Sbjct: 232 YMKEGWVGASNASDPRGAALLMEHPDRMH--GYRVIGSNESPVEGCWCGRIRSYDLEGMT 289 Query: 293 ISVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + V F PL G + NA+ L + +GI V+ L + VPGR E Sbjct: 290 LEVYDPRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLE 349 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 +R + +DYAHT + LE +L +R +T G++ VVFG GG+R RP +G +A Sbjct: 350 TYRFPNRVVGV-IDYAHTPDGLEKVLGALRGVTVGKLWVVFGHGGERTGSHRPKLGAVAA 408 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GF-----IEKGNRIEAIRTAIEML 456 LAD A+VT DNPRSEDP I A+I+ GI GF +++G EAIR A++ Sbjct: 409 SLADRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRG---EAIRYALDNA 465 Query: 457 NKQDVLVVAGKGHE 470 DV+ + GKG E Sbjct: 466 EIGDVVAITGKGPE 479 >gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Saccharomonospora viridis DSM 43017] Length = 524 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 160/466 (34%), Positives = 239/466 (51%), Gaps = 43/466 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + ++H+ G +F A+ G + G F A+A GA A++ + + A S Sbjct: 50 RVTGATLRAQHVLPGDLFAALPGARAHGADFTADAVAGGAVAVLTDEEGASR--PAVRES 107 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 P+L+ + R L A+ +YG+ P L+V G +G S + FV+ + +G + Sbjct: 108 GLPVLIHPDPRGVLGSVAAWIYGE-PSLTLSVLGITGTSGKTTTSYFVESGLRAAGYHTG 166 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T I S + TTP L + + +GVTHV++E SSH L R++G + Sbjct: 167 LIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVTHVAMEVSSHALALGRVNGTRF 226 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHNA 263 G+FTNL +DH+D+H+ + YF+AK LF+ + + I+ D A+ + V R Sbjct: 227 TVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDG---RSTHEIVVVDSAWGQALVTPRTVTV 283 Query: 264 GCRVLS-VGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGL 321 S G++ I L +Q T+ + +G+ + PLPGEF V NA++AA + Sbjct: 284 STEPDSDAGWRATDITLTP----GGEQSFTLHAPDGRKAQAVLPLPGEFNVANAVLAAAI 339 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--------VDYAHTSNSLEMIL 373 +G+D VLE L + V PGR E R+Y VDYAH ++ L Sbjct: 340 LDTVGVDLDAVLEGLATVEV-PGRME---------RVYLGQPFTAVVDYAHKPAAVTQAL 389 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R T GR+I V G GGDRD KRP+MG+ A +D+ IVTDDNPRSEDP IR I+ Sbjct: 390 RALRARTEGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTDDNPRSEDPAAIREAIL 449 Query: 434 HGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G +E G+R EAI A+E DV+ VAGKGHE+ Sbjct: 450 AGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGHES 495 >gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS155] Length = 499 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 223/460 (48%), Gaps = 19/460 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83 + N+++ DSR I+ G +F+A+ G+K DG FI + + GA A++V + + Q S Sbjct: 18 QSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDLGAAAVLVHTDDADQHGKVLHS 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138 I +R+ ++ A R H ++ +TGT+GK+S + + Q+ Sbjct: 78 DNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G + D+ TT I L + L +QG + ++E SSHGL Q Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH ++Y AK LF ++ DDA + Sbjct: 198 RVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255 Query: 258 KRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + ++ G+Q + K T+ + + PL G F + N Sbjct: 256 TELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVWPEGETEIHSPLLGAFNLSN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G D + E ++ L V GR E T + + VDYAHT +++E L Sbjct: 316 LLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPDAIEQALN 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R +G + VFGCGGDRD+GKRP+MGK A AD +VT DN RSEDP +I +II Sbjct: 375 ALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQYADRIMVTSDNARSEDPAQIITDIIQ 434 Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ + + +RI AI+ + + DV+++AGKGHET Sbjct: 435 GLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474 >gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 507 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 215/454 (47%), Gaps = 26/454 (5%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ G + G F +Q A + Y + + R P++V D+ R L Sbjct: 42 LFAAVAGTRSHGAKF--AGSSQAAAIVTDKPGYEILKTAGETR---PVIVFDDLRAHLGA 96 Query: 105 FASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDN 160 ++ + G +P + V G +G S + ++ +G + IG T T I+ Sbjct: 97 VSALVCG-NPSACMTVIGITGTSGKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPT 155 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 LTTP L + + GVTHV +E SSH + R+ G+ FTNL +DH+D+H Sbjct: 156 SLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFH 215 Query: 221 QTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 T + YF+ K +LF P + +II DD + ++ + A A V + G F+ Sbjct: 216 PTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMAT 275 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 Q T++ +GK +PG F V NA +A +D + L + Sbjct: 276 DIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANI 335 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 V PGR E + N +G VDYAH +LE +K +R GR+I VFG GGDRD GKR Sbjct: 336 QV-PGRMEKI-DNDKGVLAVVDYAHKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKR 393 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------EKGNRIE 447 PIMG A+ AD+ I+TDDNPRSEDP IR I G F+ G+R + Sbjct: 394 PIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQ 453 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 AI A+ D ++VAGKGHE +V GE + Sbjct: 454 AIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMR 486 >gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella novicida FTG] Length = 479 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/492 (29%), Positives = 250/492 (50%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ +++ L I + +I + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KNINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHQFED-------QKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYY--KKYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I +I G I +R +AIR +IE N+ D++++AGKGHE ++ NG K Sbjct: 404 SIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREI 492 + + +II+ + Sbjct: 463 EYFDEREIIKNM 474 >gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS) gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 497 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 237/481 (49%), Gaps = 18/481 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ I+ + DSR + G +F+A+ G K+DG FI QAI + A AI+ + + Sbjct: 19 KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 N ++ + +SL A+R Y K P I+ +TGT+GK++V + Q G Sbjct: 79 IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + Q TT SPI++ LS + + V++E SSHGL QHR+ + Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+ + Y +AK LF K I+ ADD Y K +K+ N Sbjct: 198 PFYIAIFTNLTQDHLDYHENLEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255 Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +++ Y K+I+ + +N +T L G F V N L Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVTNLL 315 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 ++ + +G + ++ EK+ V GR E + I +DYAHT ++L+ L I Sbjct: 316 LSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKKTLNAI 374 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + I +FGCGG+RDQ KRPIMG IA ++D I+T+DNPR+E +KI +I++G Sbjct: 375 HSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQDILNGC 434 Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R +AI A ++++AGKGHE I+ N S D I+ +L Sbjct: 435 KNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKIVLNLL 493 Query: 494 G 494 G Sbjct: 494 G 494 >gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glucuronolyticum ATCC 51867] Length = 507 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 215/454 (47%), Gaps = 26/454 (5%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ G + G F +Q A + Y + + R P++V D+ R L Sbjct: 42 LFAAVAGTRSHGAKF--AGSSQAAAIVTDKPGYEILKTAGETR---PVIVFDDLRAHLGA 96 Query: 105 FASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDN 160 ++ + G +P + V G +G S + ++ +G + IG T T I+ Sbjct: 97 VSALVCG-NPSACMTVIGITGTSGKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPT 155 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 LTTP L + + GVTHV +E SSH + R+ G+ FTNL +DH+D+H Sbjct: 156 SLTTPEAPTLQELFLTMRDAGVTHVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFH 215 Query: 221 QTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 T + YF+ K +LF P + +II DD + ++ + A A V + G F+ Sbjct: 216 PTMEDYFHTKAKLFVPGSPLRAKKSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMAT 275 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 Q T++ +GK +PG F V NA +A +D + L + Sbjct: 276 DIETEPDGTSQFTVAYKGKKQRVTLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANI 335 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 V PGR E + N +G VDYAH +LE +K +R GR+I VFG GGDRD GKR Sbjct: 336 QV-PGRMEKI-DNDKGVLAVVDYAHKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKR 393 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------EKGNRIE 447 PIMG A+ AD+ I+TDDNPRSEDP IR I G F+ G+R + Sbjct: 394 PIMGSAAVAGADVVIITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQ 453 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 AI A+ D ++VAGKGHE +V GE + Sbjct: 454 AIALAVNKSQAGDAIIVAGKGHEQGQLV-GGEMR 486 >gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis subsp. novicida GA99-3549] gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida GA99-3549] Length = 479 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 147/492 (29%), Positives = 251/492 (51%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I+ + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHQFED-------QKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L + +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYY--KKYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AII Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAII 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I ++I G I +R +AIR +IE N+ D++++AGKGHE ++ NG K Sbjct: 404 SIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREI 492 + + +II+ + Sbjct: 463 EYFDEREIIKNM 474 >gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 468 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 235/470 (50%), Gaps = 24/470 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S D+R ++ W+FV G+ DG F+ +A+ +GA ++ +Q T Sbjct: 13 RILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGA-VVLCDQMLPMQHVYYTPH 71 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V T+ L L+ L + +++ +TGT+GK+SVAS + Q+ + G QI Sbjct: 72 ------VERITQALLELYYGDLCTR--LHVIGITGTNGKTSVASIISQLLKMEGCRVLQI 123 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G S + TTP LA + +THV +E SSH +DQ+R+ + Sbjct: 124 GTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQNRISFLHFDD 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGC 265 +TN+ +DH+DYH T+ Y K +L L P+ + I+Y D +Y +E++ A +A Sbjct: 184 IVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGT--IVYNSDLSYMQELVNLAQHA-- 239 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +S+G Q L V + ++ ++G +DF L G VYN A + + Sbjct: 240 -CISIGMQAAHFPLHHVEL--SDHDLSFRLQG--YDFHARLLGMVNVYNLAEAIVVVHRL 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G + + EKL V GR E + G I++DYAHT+ ++E +L ++ GRI+ Sbjct: 295 GFSYERLRKDCEKLLPVSGRMEVMEVG--GFTIWIDYAHTAAAVEELLVFANSVKKGRIL 352 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGN 444 + GCGG+RD+ KRP M IA +D+A+ T DNPR E ++I A++ P N Sbjct: 353 TILGCGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADMKCESFPNAAVFEN 412 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R AI+ I++ D++++AGKG E I G++ D ++E L Sbjct: 413 RYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGQEYPFSDRSCVKERLA 461 >gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Providencia rustigianii DSM 4541] Length = 495 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 160/506 (31%), Positives = 240/506 (47%), Gaps = 40/506 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L L+ F + + E++ DSR AG +F+A+ G++ DG +IPQAIAQG AI+ Sbjct: 6 LCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIA 65 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + ++ + P++ + + LS A Y P + + + G +G + + Sbjct: 66 EAQGEAEEGEIRVVHGVPVIYLHDLNNRLSALAGEFY-HQPSSKMKLVGVTGTNGKTTTT 124 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHV 185 Q I Q + +G TS + + L TT S + + L+ L ++ T Sbjct: 125 QLIAQWAK----GLGETSAVMGTVGNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLT 180 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSHGL Q R+ + A FTNL RDH+DYH + Y AK LF K I Sbjct: 181 AMEVSSHGLIQGRVAALNFDAAVFTNLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQ--I 238 Query: 246 IYADDAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I ADD + + R A C V + +QG ++ V + + + Sbjct: 239 INADDDVGLKWLHRLPQA-CAVTMENRIPKNWQGSWLKATNVDYHDKGATIHFASSWGEG 297 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F PL G F V N L+A + + +L + L V GR E T + + V Sbjct: 298 SFESPLMGAFNVSNLLLAMATLLMMDYPLDKLLAATDFLMPVCGRMEVFSTEGKP-TVVV 356 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT ++LE L R G++ VFGCGGDRD+GKRP+MG A AD ++TDDNP Sbjct: 357 DYAHTPDALEKALLAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNP 416 Query: 421 RSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 RSE+P I +I+ G IPG R EA+ + I DV++VAGKGHE Sbjct: 417 RSEEPLDIINDIMAGILDSSRVLAIPG------RPEAVTSTILQAQPDDVILVAGKGHED 470 Query: 472 VHIVTNGEKKMSV-DCDIIREILGLI 496 I+ G +++ D + +LG++ Sbjct: 471 YQII--GSRRLDYSDRLTVARLLGVV 494 >gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 493 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 156/497 (31%), Positives = 240/497 (48%), Gaps = 67/497 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V D+ I G F+A GN G +I A+ +GA AIVV + + Sbjct: 21 EIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAIVVDDENYFNEADLPV-- 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 PI+ V N F++ ++++Y E ++AVTGT+GK++V F+ QI + + Sbjct: 79 --PIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFIGQILNQLDKRAMV 136 Query: 147 IGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQG----VTHVSVEASSHGLDQHR 198 IG + + LTT AK + +L + V +V +EASS GL++HR Sbjct: 137 IGTNGVFIDREKCYPEMEALTTLQ----AKNIQFLFKEAIRLDVPYVVLEASSIGLEKHR 192 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 LD + G F N+ DHI+ H + + Y +K L L K++ II +DD+ Sbjct: 193 LDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQIL--STLAKKN--IINSDDSV------ 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKK-------------------VCAIHNKQQVTISVEGKD 299 CR + + +GK I K C H K++ +++ Sbjct: 243 ------CRSIGLATKGKRIFFGKGSHVDYFFQTLVDGPASTTCCIQHKKEKHIVNI---- 292 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G++Q N L A + + + + L + GRFE V N G I Sbjct: 293 -----PLVGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFEHV-ENQLGLSIV 346 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++++MIL+ ++ T R+IV+F CGG+RD+ KRP MG IA AD I+T DN Sbjct: 347 VDYAHTPDAMKMILQTLKKHTKRRLIVMFSCGGNRDKAKRPKMGMIASIYADYIILTTDN 406 Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 R+E+P++I +I G +IE NR EAI A+ K D +V+ GKGHE + Sbjct: 407 ARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKGHEKTQQIG 466 Query: 477 NGEKKMSVDCDIIREIL 493 + +K S D +RE++ Sbjct: 467 DKQKYFS-DLVFVREMI 482 >gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e ligase [Dichelobacter nodosus VCS1703A] Length = 482 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 156/481 (32%), Positives = 237/481 (49%), Gaps = 41/481 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL+ L + ++ I+ +S DSR + +++A G + F I AI Sbjct: 6 ELLTALGLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEI--NCAAIF 63 Query: 73 VSSAYSLQDFSATIRSNTP--ILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127 Y N P + V+ + +S A Y HP I VTGT GKS Sbjct: 64 YEPPYQ----------NPPPHAITVERLSEKVSAIADLFY-DHPAQKLWITGVTGTDGKS 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S+ F+ Q + L + G + + Q TTP I + L++ +QG V++ Sbjct: 113 SLVHFIAQATGAAMLGTIGYGNLNAL----QPASHTTPDAITTQQQLAHFVAQGNQAVAM 168 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH L QHR+ + + FTNL RDH+DYH + YF AK +LF P + A+I Sbjct: 169 EISSHALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFA--FPIKH-AVIN 225 Query: 248 ADDAYSKEVMK--RAHNAGC--RVLSVGYQGKFIHLKKVCA----IH-NKQQVTISVEGK 298 DD + + ++ R +++ C V + G H VCA +H N T++++ + Sbjct: 226 IDDPHGRRLISEHRINSSACIWAVSAKGAHNAAAH-HNVCAHDYCLHQNGVTFTLAIDDE 284 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L F + N L A A G A + E L +LH V GR E + +++ I Sbjct: 285 TIAVETHLLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQALAI 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT+ ++E +L IR SG++ ++FGCGG+RD+GKR +M + A AD IVTDD Sbjct: 345 -VDYAHTAGAIESVLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIVTDD 403 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR+EDP I A+++ G + EK + R +AI A+ L+ D +++ GKGHE I Sbjct: 404 NPRTEDPAAIIADVMQGFE-YPEKIHVIQPREQAIHYALAQLHAGDAVLITGKGHEDYQI 462 Query: 475 V 475 + Sbjct: 463 I 463 >gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC 33656] Length = 495 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 160/496 (32%), Positives = 240/496 (48%), Gaps = 62/496 (12%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ L+ + D+ L I +I+ + DSR ++ +FV I G D H F Sbjct: 6 MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 57 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114 IP + +GA A+VV + TPI + VDNTR L+ ++ + Sbjct: 58 IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDNTRLALACMSAAYFDYPA 105 Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168 E I + T K + V+ I + +G+ + IG TI S D R+ TTP Sbjct: 106 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 162 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226 + + + +G+ V +E SS L HR+ G G FTNL DHI H+ + Y Sbjct: 163 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 222 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280 + K LF + I DD + + VMK H C+V + GY+ + + LK Sbjct: 223 MHCKSLLFRQC----RLGIFNGDDEHLEGVMK-GHT--CQVETYGYKSTNNLIAENVELK 275 Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H V V G DFD +PG+F VYN+L A +C +D + E L Sbjct: 276 KE---HGALGVKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 330 Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 HV V GR E V R + +DYAH + +LE +L ++ GR++ +FGCGG+R + + Sbjct: 331 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 389 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454 R MG+++ LAD+ +VT DNPR E+P I +I+ G+ ++ +R EAIR +E Sbjct: 390 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 449 Query: 455 MLNKQDVLVVAGKGHE 470 D++V+AGKGHE Sbjct: 450 NAKDGDIIVLAGKGHE 465 >gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989] Length = 480 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 228/472 (48%), Gaps = 49/472 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G I+ + G DGH FI AI GA IV S + S Sbjct: 15 ITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKEL------LNMASG 68 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI------CQRSG 141 + V++ ++ A Y K + + VTGT+GKS++ + ++ + C G Sbjct: 69 AVYIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMINDKTPCGYIG 128 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + + G Q N LTTP ++L L+ + G+ ++E SSHGL QHR+DG Sbjct: 129 TIAIKYGDIEL-----QPN-LTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHRVDG 182 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I FTNL DH+D+H T + YF AK LF+ L+ + +I+ DD E +K Sbjct: 183 ISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDE-KYEALKDCS 241 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312 A RV+S G + A + + +S +G FD ++ L G F V Sbjct: 242 KA--RVVSYGINKE--------ADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNV 291 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN L A G D ++E + V GR E + + + VD+AHT + +E + Sbjct: 292 YNLLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDC-GQPYNVIVDFAHTPDGMEKM 350 Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 ++ R+IT R+I VFG G RD KR + G++A D IVT+D+PR EDP++I Sbjct: 351 MQFGRSITMPGHRLIAVFGSAGKRDVHKRKVFGELADKYCDYIIVTEDDPRDEDPKEIAD 410 Query: 431 EIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +I GI F++ +R EAI AI + D +++ GKG E+ NG Sbjct: 411 QIKSGIQNTLHVFVQ--DRYEAIHQAISSAQEGDTVLLLGKGDESFIYRENG 460 >gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium amycolatum SK46] gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium amycolatum SK46] Length = 524 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 156/466 (33%), Positives = 231/466 (49%), Gaps = 44/466 (9%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99 + G +F A+ G + G + Q+ A V++ L+ + P+LVVD+ R Sbjct: 39 VPEGGMFAAVPGTRTHGARYAQQSAATA----VLTDEEGLKILREAGETR-PVLVVDDVR 93 Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISS 155 + A+ +Y HP + L + G +G S + ++ +G S+ IG T T I+ Sbjct: 94 AVMGHVAAEIY-DHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRING 152 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 A + LTTP L + + S+GVTHV +E SSH L R+DG+ G F NL +D Sbjct: 153 RAVPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGRVDGVSFDVGCFLNLSQD 212 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK-RAHNAGCRVLSVGYQ 273 H+D+H+T + YF AK +LF+ P +P A++ DD + + A + +V +V Q Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272 Query: 274 -------------GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319 ++ A + Q V ++ D + PLPG F V NA VA Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIR 377 + A+G L ++ V PGR E + RG VDYAH ++ +L +R Sbjct: 333 AVLDAVGHAKDAAKSGLAQVRV-PGRMERI---DRGQDFLAVVDYAHKPAAVAEVLATLR 388 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 T GR++VV G GGDRD KRPIMG A AD+ I+TDDNPRSE P +IRA ++ G Sbjct: 389 AQTEGRVLVVVGAGGDRDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAK 448 Query: 438 GFI------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + E G+R +AIR +E+ + D +VVAGKGHET Sbjct: 449 EAVASGKASSDTVVEEIGDRGQAIRRVVELAHSGDSIVVAGKGHET 494 >gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 489 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 233/478 (48%), Gaps = 31/478 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY---SLQDFSA 84 R + VS DSR ++ W+FV G DG +I A+ +GA + + Q A Sbjct: 19 RILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRKGAVVLCDKKRQWRKNGQKVEA 78 Query: 85 TI-RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 T + + ++ +G ++ ++ V+GTSGK+SVA + I ++ Sbjct: 79 TSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIGVSGTSGKTSVACIITHILRKQQ 138 Query: 142 LSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +F+IG DN+ TTP LA L QG TH+ +E SSH +D Sbjct: 139 KKTFRIGTHE-----VDDNQHIQAIPNTTPDSFTLANLLKEAIQQGFTHIVMEVSSHAID 193 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R+ + A +TN+ +DH+DYH T+ Y K +L L K+ II D Y Sbjct: 194 QNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKL-RRYLKKDGFIIINKDFPY--- 249 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314 +MK H + +++++G+ ++ +H +Q I ++ G + F+ PL G+ VYN Sbjct: 250 LMKLQHLSDAKLITIGFDAAHFTIED---MHLSEQGAIFTING--YSFVIPLLGKMNVYN 304 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A LC + I ++ + L V GR E + + + +DYAHT +++E +++ Sbjct: 305 TTEAIALCHMLNITYEQLIASCQDLPYVSGRMELM--KGKKHTVLLDYAHTPDAVEKLME 362 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R+I G++ +V GCGG+RD+ KR +M A +D+AI T DNPR E I ++ Sbjct: 363 FARSICQGKLYIVVGCGGERDRSKRKLMADAACKYSDMAIFTSDNPRHESLSTILLDMCK 422 Query: 435 GIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 E NR AI+ I++ + D++V+AGKG+E V G D D +R+ Sbjct: 423 TTYQNYEVVENRYFAIKYTIKIAKESDIIVIAGKGNEKTQDV-EGRMYPFDDADCVRK 479 >gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC 27244] gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Acinetobacter haemolyticus ATCC 19194] Length = 499 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 146/469 (31%), Positives = 232/469 (49%), Gaps = 45/469 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + S DSR ++ G IF+A+ E F A+ GA A++ + + Sbjct: 17 WYTQPFQGFSLDSRKVEKGQIFIALSSYSQPEKTRQFAQNALDAGALAVISEATLGV--- 73 Query: 83 SATIRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 T V + R ++ + + P +AVTGT+GK++++ + ++ Sbjct: 74 -------TNEWVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAELIS 126 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G +G T I + TT + L AL + G V++EASSHGL+Q Sbjct: 127 SQGKGCAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL+G L ++NL RDH+DYH T +AY AK RLF+ K +I DDAY++ ++ Sbjct: 187 RLNGCDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKA--VVINLDDAYAQLML 244 Query: 258 K--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 +A+ + ++L+ L + A ++ + + G +F L P L Sbjct: 245 DAAKANPSQPKILTYS-------LTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPL 297 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V N L + G D A ++E + +L PGR + + +R VDYAHT Sbjct: 298 LGHFNVENLLASLIAAECAGFDLADLVEFVPQLQGAPGRMQVIQDANR--LFVVDYAHTP 355 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++L +L ++ +G++ VFGCGGDRD+GKRP+M + ALD A+ I+T DNPR+ED Sbjct: 356 DALIQVLTTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQA 415 Query: 427 KIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +I A++ G+ F E +R EAI+ + D++V+AGKGHE Sbjct: 416 QIFADMKQGM-NFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHE 463 >gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine gamma proteobacterium HTCC2143] Length = 508 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 160/455 (35%), Positives = 230/455 (50%), Gaps = 21/455 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ + SDSR I AG +F+A+ G+ DG +I QA+A GA A++V A D Sbjct: 28 ELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVLVERAGHSAD--KLNYP 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N PI+ V+N LS A R Y H +I+ VTGT+GK+S QI G S Sbjct: 86 NVPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCTQLYMQIANLLGRSCGV 145 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + TTP I + K L+ + ++E SSHGL+Q R+ ++ Sbjct: 146 IGTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEVSSHGLEQGRVADVQFE 205 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL RDH+DYH + AY K RLF + P A+I DD + ++ A Sbjct: 206 LALFTNLSRDHLDYHGSMLAYGETKARLFRQ--PGLKCAVINIDDHFGCALVDEM-PATT 262 Query: 266 RVLSVGYQ--GKFIHLKKVCAIH-----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 V+ G + + H V + + + + + PL GEF + N LVA Sbjct: 263 DVIRYGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEINSPLLGEFNLSN-LVA 321 Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 C + G + + + KL VPGR E + +S + VDYAHT + LE L +R Sbjct: 322 VICCFGLQGFALSSIANVIPKLMTVPGRMERI-VSSADITVVVDYAHTPDGLEKALLAMR 380 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 T G++ VFGCGG+RD GKRP+MG + AD +VT DNPR+E +I EI+ G+ Sbjct: 381 QHTDGKLWCVFGCGGNRDHGKRPLMGALVQRHADHVVVTSDNPRNESAAEIIDEILGGVD 440 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 P +E+ +R AI+ AI D +++AGKGHE Sbjct: 441 RPSMVEE-DRGLAIQFAIANALPGDCVLIAGKGHE 474 >gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 537 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 237/458 (51%), Gaps = 34/458 (7%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTPILVV 95 ++ I G +F A+ G + G F A+A+GA AI+ A ++L + + S+ P+LV Sbjct: 60 AQGIVEGDLFAALPGARAHGAEFAADALARGATAILTDEAGFAL---VSALGSDMPVLVH 116 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 D+ R L ++ +YG+ E ++ +TGTSGK++ + V+ +G ++ +G TI Sbjct: 117 DDPRGVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEAALTAAGRTTGLVG---TI 173 Query: 154 SSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + R LTTP L + + QG+ V +E SSH L R+DG++ G+F Sbjct: 174 ETRMRGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAF 233 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL +DH+D+H+ + YF AK RLF + A+I DD + + + A A V Sbjct: 234 TNLSQDHLDFHRDFEDYFAAKARLFAADSSVHAQHAVICIDDVWGQRMADVARGAHSIVT 293 Query: 269 SVGY----QGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V +G + Q + EG D LPG++ V NA +A LC Sbjct: 294 TVATTPDSEGAVWTAGPATVSPSGSQTFALTTAEGTTLDVELRLPGQYNVANASLAVALC 353 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTIT 380 A+G+D +E + + V PGR + + RG VDYAH ++E ++ +R Sbjct: 354 AALGVDPRDAVEGIAGVDV-PGRVQRI---DRGQDFLAVVDYAHKPAAVEAVIATLREQV 409 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR+ VV G GGDRD GKRP+MG A AD+ I+TDDNPRSEDP KIRA + G G Sbjct: 410 RGRVAVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVP 469 Query: 441 EK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E +R +AI A+ DV++VAGKGHE Sbjct: 470 ESERGQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHE 507 >gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus sphaericus C3-41] Length = 493 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 143/465 (30%), Positives = 234/465 (50%), Gaps = 34/465 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR +Q +FV I G DGH + +A+ GA +V L + A + Sbjct: 27 QVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGEMIAQV-- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142 +V +T + + L A++ + ++I + VTGT+GK+SV +Q I ++S L Sbjct: 85 -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 139 Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S F + S+ + L+T I+ AK +G +++E SSHGL RL Sbjct: 140 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 193 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G+ FTNL DH+D+H T + Y +AK LF +L L K ++ ADDA+S+ Sbjct: 194 AGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 251 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314 + A V + G + + + + ++ + VE + + L GEF +YN Sbjct: 252 -RYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIYN 310 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G ++E +E+L V GR E V + +++VDYAHT +++E ++ Sbjct: 311 VLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKV-CSELPVQMFVDYAHTPDAIEKAIE 369 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I + G GG+RD+ KRP M + A A+ I+T D+PR ED I ++ Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYNSITGDLAK 428 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ F G+R EA+R AIE+ D+++ AGKGHE I+ N Sbjct: 429 GMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN 473 >gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium 3_1_46FAA] Length = 488 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 152/460 (33%), Positives = 239/460 (51%), Gaps = 35/460 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ +++DSR +++G +FV I G DGH ++ +GA AI+ +D A Sbjct: 20 ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145 ++ +NTR L+L ++ +G +P L V G +G + I RS L Sbjct: 74 -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLI--RSILEGVG 129 Query: 146 -QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI + D ++ TTP + + + + +G V +E SS GL HR Sbjct: 130 HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRTA 189 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 GI G FTNLG+DHI + H+ + Y K LF++ I DD Y +++ + Sbjct: 190 GIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYEDIFR 245 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVYN 314 A C+V + G+ K + + V + + +S V GK DFD +PG+F VYN Sbjct: 246 ---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVYN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A +C G+ S + E L+ HV GR E + S + +DYAH + SLE +L Sbjct: 303 SLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLT 360 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ R++ VFGCGG+R + +R MG+++ LAD+ I+T DNPR E+P++I +I Sbjct: 361 TLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIKV 420 Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 421 GIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460 >gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas sp. SKA14] Length = 498 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 211/456 (46%), Gaps = 41/456 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G FVAI G G F+ QA A GA AI+ + + P L Sbjct: 25 DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASAILFEPPAPAELPAPADAIAVPGL-- 82 Query: 96 DNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 R + A + +G P +A VTGT+GK+S + Q G S IG Sbjct: 83 ---RARMGAMADQFHGA-PSRAMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGA 138 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + + TTP + + L+ L G V++E SSH LDQ R+D + FTN Sbjct: 139 GLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTN 198 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-------------- 257 L RDH+DYH +Y AK RLF P A++ DDA+ +++ Sbjct: 199 LTRDHLDYHGDMASYGAAKARLFHR--PGLKAAVVNLDDAFGRQLFAGLPAGVQPIGLSS 256 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + A +A R ++ G+ I + V ++G+ PL G F V N L Sbjct: 257 RGATDASVRAEALQLDGRGIAFELV------------IDGQRAAVQSPLLGRFNVDNLLA 304 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AG A G + E L L + GR +G + VDYAHT ++L+ L ++ Sbjct: 305 VAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALKQALDSLH 364 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G + VFGCGG+RD GKRP M IA LA+ IVTDDNPR ED + I A+I+ G Sbjct: 365 GHLHGALFCVFGCGGERDTGKRPQMAAIAERLANQVIVTDDNPRGEDGDVIVADILAGFQ 424 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +R AI A++ D++++AGKGHE Sbjct: 425 NADAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHE 460 >gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 496 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 243/481 (50%), Gaps = 26/481 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N + +S+ I IF+A+ GN G FI +AI G+ I++ + L+ Sbjct: 23 KLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGIIYFIK 82 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 N PI+ N LS + + Y HP N++ +TGT+GK++++ F+ + G Sbjct: 83 NIPIIYFYNLNYSLSELSGKFY-LHPSRYMNVIGITGTNGKTTISHFIAKWLFLLGE--- 138 Query: 146 QIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +IG T+ + + ++ TT S I K L++ + + V +E SSHGL Q+R++ Sbjct: 139 KIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQNRVNN 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I + F+NL +DHIDYH+ Y +K +LF +L II DD K +K+ Sbjct: 199 INFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKL--NVYKYIINYDDVIGKNWIKKIP 256 Query: 262 NAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N+ KF +++K + + +++IS + GEF + N L+ Sbjct: 257 NSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNLLL 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + +G + + E L + GR + + R+ VDYAHT ++LE +L I+ Sbjct: 317 SFVALLTLGYNFKSLANVAENLTMPNGRMKIFYV-KKIPRVIVDYAHTPDALEKVLSAIK 375 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI 436 I +FGCGGDRD+ KR +MGKI DL I I+ T+DNPRSE KI +I GI Sbjct: 376 LHFKKNIWSIFGCGGDRDKSKRRVMGKIC-DLYSINIILTNDNPRSESETKIFNDIKIGI 434 Query: 437 PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + K N R AI+ AI+ N++D++++ GKGHE H V +K D ++ +I Sbjct: 435 KN-LNKVNIIPSREHAIKFAIDNSNEKDIVLILGKGHEE-HQVFKYKKVFFSDQILVNKI 492 Query: 493 L 493 L Sbjct: 493 L 493 >gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Stenotrophomonas maltophilia K279a] gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Stenotrophomonas maltophilia K279a] Length = 502 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 209/455 (45%), Gaps = 39/455 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G FVAI G G F+ QA A GA I+ + + P L Sbjct: 29 DSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGASVILFEPPAPAELPAPADAIAVPGL-- 86 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 R + A + +G ++ + VTGT+GK+S + Q G S IG Sbjct: 87 ---RARMGAMADQFHGAPSRSMAMVGVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAG 143 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + TTP + + L+ L G V++E SSH LDQ R+D + FTNL Sbjct: 144 LYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNL 203 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--------------K 258 RDH+DYH +Y AK RLF P A+I DDA+ ++ + Sbjct: 204 TRDHLDYHGDMASYGAAKARLFHR--PGLKAAVINLDDAFGGQLFAGLPAGVQPIGLSSR 261 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A +A R ++ G+ I + V ++G+ PL G F V N L Sbjct: 262 GATDASVRAEALQLDGRGIAFELV------------IDGQRAAVQSPLLGRFNVDNLLAV 309 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 AG A G + E L L + GR +G + VDYAHT ++LE L ++ Sbjct: 310 AGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVVVDYAHTPDALEQALDSLHG 369 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 G + VFGCGG+RD GKRP M IA LA+ IVTDDNPR ED + I A+I+ G Sbjct: 370 HLQGTLFCVFGCGGERDTGKRPQMATIAERLANKVIVTDDNPRGEDGDVIVADILAGFTD 429 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +R AI A++ D++++AGKGHE Sbjct: 430 ASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHE 464 >gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila DSM 6192] Length = 503 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 151/475 (31%), Positives = 231/475 (48%), Gaps = 45/475 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR +++G +F A+ G DGH F+ A+ +GA A+V + R Sbjct: 24 RVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAVAVVHERELP------SYRE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L V N R+ LS ++ YG HP + VTGT GKSS F+ Q+ + SG+ Sbjct: 78 GVVYLRVKNARRALSAASAVFYG-HPSQDLEVTGVTGTDGKSSTTYFIYQLLRASGVKVG 136 Query: 146 QIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199 I T+ S+ + R +TP ++ AL+ + G TH VEA+SHGL RL Sbjct: 137 CIS-TALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARL 195 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + ++ G TN+ +H+++H + + Y K RLF L P+ A++ DD S + +R Sbjct: 196 EDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGL-PEGGKAVLNLDDPSSGFLAER 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEGKDFDFLFPLPGEF 310 AG +G + +V C +H ++ + + V P PG F Sbjct: 255 T-RAGVWGYGLGTREGARLWAEVREESLAGSRCLVHGRETLEVWV---------PFPGRF 304 Query: 311 QVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V N L A A + L H+ L VPGR E V + + VDYAHT + Sbjct: 305 NVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAF 363 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E +L +R GR+IVVFG G+RD+ KRP+ G++A A++ ++TD++PR ED I Sbjct: 364 EKLLPFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAIL 423 Query: 430 AEIIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EI G G +E +R EAI A+ M + D ++ GKGHE + G Sbjct: 424 REIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEG 478 >gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Finegoldia magna ATCC 29328] Length = 478 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 227/475 (47%), Gaps = 24/475 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + +I V++DSR I+ G +FVAI G + DGH FI +AIA G IVV+ S + Sbjct: 17 KNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANGTNTIVVTEDVSQNEGI 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I+ + + + F S+ ++ VTGT+GK++ AS + I + Sbjct: 77 NYIKVKDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTASMISHILEHLNSP 131 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T I+ + TTP + K L + + + VE SSHGL HRLDGI Sbjct: 132 CTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVECSSHGLYLHRLDGI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 F NL +H+D+H+ + YF+AKM LFE K I DD Y ++ R + Sbjct: 192 DFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED 247 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A S+ + F + V I K I K+ F+ F VYNA+ A Sbjct: 248 A--YTFSLENESDF-KAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIVAV 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G + + + LE V RFEFV N G I +D+AHT + E I K++ Sbjct: 301 NLLGYELKDIAKSLESFTGVEARFEFV-KNDMGINIVIDFAHTPKAFENIYKSVP--NDK 357 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438 R I V+G GDR + R +GKI+ + ++VT D+P+ + E I +I+ GI Sbjct: 358 RKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEENGE 417 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ +R AI+ AIEM N D +++ GKG E + EK + + + E+L Sbjct: 418 YVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENFIKLKGNEKTPYSEKETVNEVL 472 >gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cellulosilyticus DSM 2522] Length = 491 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 244/479 (50%), Gaps = 33/479 (6%) Query: 14 LINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L+N+L + M ++ I ++ DSR + G +F I G DGH F QAI +G A Sbjct: 7 LLNKLPSYEMVGDNNIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVA 66 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKS 127 IV +D + + P++ V ++++ +++ +S Y +P + ++ VTGT+GK+ Sbjct: 67 IVAE-----KDLNVAV----PVIKVTSSKRAMAIISSAFY-DYPSSKLHLIGVTGTNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + +++I + + ++ IG T+ +D + TTP + L K S + +GV Sbjct: 117 TTTHLIEKILRDAEKNTGIIG---TMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVN 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LP 239 V++E SSH L+ R+ G FTNL +DH+D+H+T + Y AK LF +L Sbjct: 174 VVTMEVSSHALELGRVHGTHFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSD 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK 298 K P + D + ++++ ++S G +G + K+ +S+ + Sbjct: 234 KSQPVAVLNRDDDTFDLLETM--TAAPIISYGIKGNADLKASKIQLHEEGTSFNMSISNE 291 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F VYNAL AA GI + E L + V GRFE V + Sbjct: 292 SCSVSMKMAGTFSVYNALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERVEL-EEDFHV 350 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT +SL+ +L+ I+ G++ VV GCGGDRD+ KRP M IA +L+D +T D Sbjct: 351 IVDYAHTPDSLKNVLETIKEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFVYLTSD 410 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPRSEDP I ++ G+ G K R +AI AI K +V+++AGKGHET + Sbjct: 411 NPRSEDPVSILKDMESGMKGSSYKVIVERRDAIYEAIRQAKKDEVILIAGKGHETYQTI 469 >gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase [Finegoldia magna ACS-171-V-Col3] Length = 478 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 157/498 (31%), Positives = 237/498 (47%), Gaps = 31/498 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L D++ K IN + + + +I V++DSR I+ G +FVAI G + DGH FI Sbjct: 1 MNLTDILDK-----INYIDY--TKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AIA GA IVV+ + D I+ + + + F S+ ++ V Sbjct: 54 DKAIANGANTIVVTEDVTEIDDINYIKVKDSRVALAQISNVVCDFPSKKL-----RVIGV 108 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK++ AS + I + IG T I+ + TTP + K L Sbjct: 109 TGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVE 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + + + VE SSHGL HRLDGI F NL +H+D+H+ + YF+AKM LFE Sbjct: 169 KKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFENAKK 228 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K I DD Y ++ R +A S+ + F + V I K I K+ Sbjct: 229 K----IANVDDEYGRKAKARFEDA--YTFSLENESDF-KAENVELIDGKMHFEI----KN 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 F+ F VYN++ A +G + + + LE V RFEFV N G I Sbjct: 278 VKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFV-KNEMGINIV 336 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +D+AHT + E I K++ R I V+G GDR R +GKI+ + ++VT D+ Sbjct: 337 IDFAHTPKAFENIYKSVP--NDKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTTDD 394 Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 P+ + E I +II GI ++ +R AI+ AIEM N+ D +++ GKG E + Sbjct: 395 PKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENFIKL 454 Query: 476 TNGEKKMSVDCDIIREIL 493 EK + + + E+L Sbjct: 455 KGNEKTPYSEKETVNEVL 472 >gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia dioxanivorans CB1190] gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia dioxanivorans CB1190] Length = 501 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 156/482 (32%), Positives = 239/482 (49%), Gaps = 29/482 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + + + ++ G +F A+ G++ G F A+A GA AI+ A + + A + Sbjct: 25 RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAAR--EAVAQ 82 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+LV + R+ L A+R+YG +++ VTGTSGK++V ++ G ++ Sbjct: 83 AAVPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATG 142 Query: 146 QIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G +T A+ L TTP L + ++ +GVT V++E SSH L R+ G + Sbjct: 143 LLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRF 202 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA----IIYADDAYSKEVMKRA 260 +FTNL +DH+D+H+ YF AK LF+ P A ++ DD + + + R Sbjct: 203 SVAAFTNLSQDHLDFHRDMDDYFEAKALLFD---PSRQGAARRRVVCVDDEWGRRLADR- 258 Query: 261 HNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 H V + G + + +H Q + G LPG + V NALV Sbjct: 259 HPDAVTVATTGPADWTAESVHQDD----DGTQSFVAARPGGTVPVRLRLPGRYNVANALV 314 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A A G+ + + L +L VPGR + V + + VDYAH ++ +L +R Sbjct: 315 ALACLDAAGVPAEVAAPRLAEL-AVPGRMQRVDAG-QDFLVVVDYAHKPAAVGALLAALR 372 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 GRI+ V GCGGDRD+GKRP+MG IA +D+ +VTDDNPR+EDP IR + G Sbjct: 373 GQVGGRIVTVLGCGGDRDRGKRPLMGAIAAAGSDLLVVTDDNPRTEDPAAIRRAVREGAE 432 Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +E G+R AI A+ D +VVAGKGHE + +G K D D +R Sbjct: 433 AEPRRGEIVEIGDRRAAIAAAVAAARPGDAVVVAGKGHEKGQEI-DGVKHPFDDVDEVRA 491 Query: 492 IL 493 L Sbjct: 492 AL 493 >gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 499 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 239/475 (50%), Gaps = 46/475 (9%) Query: 23 MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SSAY 77 ++W R R + +++DSR + F+A G D F+ A+A+GA A + + A+ Sbjct: 11 VEWLRSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQSGAEAF 70 Query: 78 SLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130 L +S + PI A+ YG + +++VTGT+GK+S A Sbjct: 71 ELDPDRTGFYSGLKAGSGPI-------------AAAFYGMPSRDLAVMSVTGTNGKTSTA 117 Query: 131 SFVQQ-ICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ Q + Q G + G T+ + TTP P+ L K L + QG+ Sbjct: 118 WWLAQALGQVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKAC 177 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++EASS G+++ R+ G + FTN +DH+DYH + AY+ +K LF K A+ Sbjct: 178 AMEASSIGIEELRMAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSWDGLKA--AV 235 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLF 304 + DD E+ + V +VG Q + L H+ Q + V EG++ L Sbjct: 236 VNVDDDKGAELAAELASTSLDVWTVGVQ-RDARLVARGVTHSAQGLAFDVVEGRESVRLQ 294 Query: 305 P-LPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + G + V N L +AA + I + SA+ + L VPGR E VG +S + VD Sbjct: 295 SHVIGSYNVSNLLGVIAAMRTVGIPLQSAV--QSCATLLPVPGRMECVGGDS-APLVAVD 351 Query: 362 YAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 YAHT ++L L+ ++ + G++ VFGCGGDRD KRP+MG +A ++ A+VT D Sbjct: 352 YAHTPDALAQALRALQPVAQARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHAVVTSD 411 Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPRSE PE I A+I+ G+ P + +R AI AI + +DV+++AGKGHE Sbjct: 412 NPRSEKPEAIVAQILLGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKGHE 466 >gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9902] gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9902] Length = 502 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 160/481 (33%), Positives = 238/481 (49%), Gaps = 41/481 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+SDSR G +FV + G + DG LF QA+ GA A V+ A + D Sbjct: 24 QIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNAGAAAAVIGPAAAASDPPGD--H 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + L AS + + E +L VTGT+GK++ ++ + G S+ Sbjct: 82 DQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNGKTTTTYLIEHLALACGRSTAL 141 Query: 147 IG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G P ++++ TT L LS +S G ++E SSH L QHR+ Sbjct: 142 FGTLVNRWPGHSVTATH-----TTAFADRLQAQLSEAASAGSQLAAMEISSHALAQHRVA 196 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMK 258 G + FTNL +DH+DYH + Q YF AK LF E L + PA ++ DD + ++ + Sbjct: 197 GCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPARAVVNGDDPWGAKLAE 256 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQV 312 R + S ++ F + + + V G+ + F PL G F + Sbjct: 257 R-------LGSQCWRSSFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQSPLLGRFNL 309 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVDYAHTSN 367 N L A G+ + + +L + VPGR E V TNS + VDYAHT + Sbjct: 310 MNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLP-TVLVDYAHTPD 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 LE L R G++I VFGCGGDRD+GKRP M IA LAD +VT DNPR+EDP++ Sbjct: 369 GLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPQR 428 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +++ GIP +++ +R AI I + D+++VAGKGHE I+ G +K+ Sbjct: 429 ILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKGHEDYQIL--GTEKVHF 486 Query: 485 D 485 D Sbjct: 487 D 487 >gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Francisella tularensis subsp. novicida U112] gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Francisella novicida U112] gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Francisella tularensis subsp. novicida FTE] Length = 479 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 147/492 (29%), Positives = 249/492 (50%), Gaps = 27/492 (5%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K +++ L I + +I+ + DSR FVA+ G DG+ +I +A+G Sbjct: 2 KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127 ++V++ ++ +D + + N ++ LS A Y + P+NI+ +TGT+GK+ Sbjct: 62 -SLVLTDSHQFED-------QKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113 Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S++S++ Q S + +G I +++ TT + L K +SY + ++ Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYY--KKYQNLV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH LDQ R++G+ F+NL DH+DYH+T YF AK +LF+ + AI+ Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAIV 229 Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304 DD Y + + V L Y +I K + I K + + G+ ++ Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTT 287 Query: 305 PLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+F + N L A L + D L L +++ V GR E + ++ +I +DYA Sbjct: 288 KLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYA 343 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT ++LE L+ + + + +FGCGG+RD KRPIM +IA + A ++T+DN R E Sbjct: 344 HTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFE 403 Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I +I G I +R +AIR +IE N+ D++++AGKGHE ++ NG K Sbjct: 404 SIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHE-CYLDKNGAK 462 Query: 481 KMSVDCDIIREI 492 + + II+ + Sbjct: 463 EYFDERKIIKNM 474 >gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756] Length = 488 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 150/461 (32%), Positives = 239/461 (51%), Gaps = 37/461 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ +++DSR +++G +FV I G DGH ++ +GA AI+ +D A Sbjct: 20 ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 ++ +NTR L+L ++ +G +P L V G +G + ++ I + G Sbjct: 74 -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLIRSILEGVG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++G TI + D ++ TTP + + + + +G V +E SS GL HR Sbjct: 130 -HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRT 188 Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 GI G FTNLG+DHI + H+ + Y K LF++ I DD Y ++ Sbjct: 189 AGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYADIF 244 Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVY 313 + A C+V + G+ K + + V + + +S V GK DFD +PG+F VY Sbjct: 245 R---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVY 301 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N+L A +C G+ S + E L+ HV GR E + S + +DYAH + SLE +L Sbjct: 302 NSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLL 359 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++ R++ VFGCGG+R + +R MG+++ LAD+ I+T DNPR E+P++I +I Sbjct: 360 TTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIK 419 Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 420 VGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460 >gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec] Length = 513 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 140/398 (35%), Positives = 210/398 (52%), Gaps = 21/398 (5%) Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 R P+LV D+ R+ L+ A+ +YG +L VTGT+GK++ A + + +G ++ Sbjct: 97 RLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGTNGKTTTAFLLDAGLRAAGYTT 156 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G T ++ + TTP L L+ + +GV S+E SSH L QHR+D ++ Sbjct: 157 GLLGTVQTRVAGTVVPSVRTTPESGDLQALLATMVERGVGAASMEVSSHALAQHRVDALR 216 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +FTNL +DH+D+H T + YF AK LFE + + A++ DD + + + +A Sbjct: 217 FAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEPA--RSAAAVVCVDDDWGRRLAALRPDA 274 Query: 264 GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R SV G + V + +G D LPG F V NAL A L Sbjct: 275 --RTYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKADLSLALPGRFNVANALGALALL 332 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379 A+G+ E + L VPGR E + G+ + VDYAHT ++E +L +R I Sbjct: 333 AAVGVPLEAAAEGISSLPGVPGRMERI----DAGQPFLALVDYAHTPGAVETLLATVRPI 388 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 +GR++VV GCGGDRD+ KRP+MG A LAD+A+ T DNPRSEDP +I +++ G G Sbjct: 389 VTGRVVVVLGCGGDRDRAKRPLMGAAAARLADLAVFTSDNPRSEDPARILEQMLAGARGA 448 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + + +R AI A+ D ++VAGKGHE+ Sbjct: 449 PGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKGHES 486 >gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium marinum M] Length = 521 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 224/467 (47%), Gaps = 42/467 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIR 87 I ++ ++ +Q G +F A+ G+ G AI +GA A++ A + SA + Sbjct: 44 ITGMTLRAQAVQPGDLFAALAGSATHGARHAADAIERGAVAVLTDPA-GVTAISALGCVP 102 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144 P+LV R L A+ +YG HP + L V G +G S + V+ + +G + Sbjct: 103 GTVPVLVHPAPRGVLGEAAALVYG-HPSDRLTVVGITGTSGKTTTTYLVEAGLRAAGRVA 161 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I + LTTP L L+ + +GV V +E SSH L R+DGI+ Sbjct: 162 GLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVERGVDTVVMEVSSHALTLGRVDGIR 221 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262 G FTNL RDH+D+H T YF AK LF+ +++ DD + + RA Sbjct: 222 FAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCIDDEAGRAMADRAGA 281 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQV 312 A ++V G+ H + + G++F L P LPG + V Sbjct: 282 A----ITVSATGQPAHWRA------TDVAPVGAGGQEFTALDPAGVGHRVRIGLPGHYNV 331 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370 N L+A + A+G+ L + V PGR E V RG VDYAH +L Sbjct: 332 ANCLLALAILDAVGVSPEQAAPGLRETRV-PGRLEQV---DRGQDFLALVDYAHKPGALR 387 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L +R R+ VVFG GGDRD GKR MG+IA +LAD+ +VTDDNPR EDP IR Sbjct: 388 EVLSTLRNPQR-RLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGAIRR 446 Query: 431 EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+ G +E +R EAI A++ DV+++AGKGHET Sbjct: 447 TIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 493 >gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM 12042] Length = 459 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 146/451 (32%), Positives = 220/451 (48%), Gaps = 32/451 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S ++ I +FVA+ G++ DG Q A+A+ Y L D + Sbjct: 11 ELTALSDRAQEIGRDGLFVALRGDRADGR--------QWADAVRSRGGYVLSD-----QP 57 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +V + R L Y +P ++ VTGT+GKS+V + + +G Sbjct: 58 GERTIVHPDPRAVYPLLLQAYY-DYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCC 116 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG I + + TTP P+ L + L +G+ V +E SS L HR+DG+ Sbjct: 117 LIGTGRIVIGDEVRFSPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TNL +DH+DYH+T +AY AK LFE+L K + AI+ DD ++ + + H Sbjct: 177 DLAVLTNLKQDHLDYHKTLKAYQRAKFMLFEKLKEKGT-AILNQDDPVTQRWLSQLHRP- 234 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V + G + V +T + G + PL G F + N A A Sbjct: 235 --VFTYGRDSVNFRIHPVA--ETLDSITFDLNGHRVEA--PLAGAFNMRNLTAALACGFA 288 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--- 381 + I A +LE + GR E V VDYAHT+++LE +LK+ R + Sbjct: 289 LDIPWAAMLEFAHHAALPEGRMEIVCRQPVLA--VVDYAHTASALEAMLKHWRKVADQRH 346 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 R+ VVFGCGGDR+ KRP+MG+IA AD ++ DDNPR+EDP++I A+I G G + Sbjct: 347 TRLSVVFGCGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQK 406 Query: 442 -KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +R EAI+ ++ D++VVAGKG ET Sbjct: 407 IIRDRAEAIKFVLDGAQTDDIIVVAGKGGET 437 >gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis MSMB43] Length = 514 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 159/492 (32%), Positives = 237/492 (48%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAGGLDPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T AY AK +LF AI+ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLRCAIVNRDDPVGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309 RV ++ Y I ++ A +++ V +V G F P G Sbjct: 255 LAGRVRTIAYG---IDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGT 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L +EKL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ +R AI A+ ++DV+++AGKGHE+ + G+K+ Sbjct: 432 PQKIIDQIVAGMQDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHESTQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase [Candidatus Nitrospira defluvii] Length = 502 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 157/494 (31%), Positives = 238/494 (48%), Gaps = 49/494 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++ DSR + G +FVA+ G + DGH F+ + +A GA A+VV + + Sbjct: 27 IADLTDDSRKVGPGSLFVAVQGERVDGHQFLDRVVAAGAAAVVVQRSGDV--------GA 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V ++R L + SR YG P + L + G +G + + + + Q+G Sbjct: 79 IPCVRVQDSRAALGILGSRFYGD-PSSSLRMVGVTGTNGKTTTTYVVKTMLEAARRQVGL 137 Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T++ + TTP + L K + + + V +E SSH L R G + Sbjct: 138 IGTVAYLVGKESIPASHTTPGALELQKLFARMREARLDTVVMEVSSHALALDRTAGSEFD 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRA 260 FTNL +DH+D+H + YF AK++LF EL + AII ADD + + Sbjct: 198 VAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGAVKPRKRAIINADDPWGARI---- 253 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQ 311 + C V Y L + I+ V +S G F P L GE Sbjct: 254 -RSACTVPVWTYG-----LHQQADIY-ADGVRLSPAGTSFTLRSPAGTCPIKSRLVGEHN 306 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L A G+ + G+ V +E + VPGRFE V + + VDYAHT ++L Sbjct: 307 VSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELV-EAGQDFSVVVDYAHTEDALVR 365 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L + + +GRII VFGCGGDRD+ KRP MG+ A+ +D+ I+T DNPR+EDP I E Sbjct: 366 LLTAAQALRTGRIITVFGCGGDRDRTKRPKMGRAAVKYSDVVILTSDNPRTEDPAAILRE 425 Query: 432 IIHGIP-GFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 + G+ E+G +R EAI AI D++++AGKGHE IV + Sbjct: 426 VEVGVKEALAERGHVRYRMVADRREAIEAAIREAKPGDMVLIAGKGHEDYQIVGTTKHHF 485 Query: 483 SVDCDIIREILGLI 496 D ++ R+ +G + Sbjct: 486 D-DREVARDTIGAL 498 >gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM 15053] Length = 490 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 165/501 (32%), Positives = 246/501 (49%), Gaps = 43/501 (8%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L+ +L +Q E+ ++ E+++DSR + G FV I G DGH ++ + +GA+A+ Sbjct: 5 DLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKGAKAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS--- 128 +V D ++ VD+TR L+L ++ +G +P L V G +G Sbjct: 65 IVEKQVEAPD-------GVTVIHVDDTRYALALMSAAYFG-YPAEQLKVIGITGTKGKTT 116 Query: 129 ----VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 V S ++ + + GL IG T I A TTP + K + G Sbjct: 117 TTYMVKSILEGVGHKVGL----IGTIETLIGGKAIPASNTTPESFTIHKYFKEMVDAGCD 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241 V +E SS GL HR GI+ G FTNLG DHI + H+ + Y K LF + Sbjct: 173 CVVMEVSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQC---- 228 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEG 297 I DD + ++V + NA CR + G+ K L+ H + V V G Sbjct: 229 RLGIANVDDRWFEDVFR---NATCRTETFGFSEK-ADLRATDVEHISRPGYLGVKYHVSG 284 Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 DFD +PGEF VYN+L A +C + A ++ K+ V GR E V S Sbjct: 285 LMDFDVEIDIPGEFSVYNSLTAIAVCRHFDV-PAEEIKKALKVAKVKGRIEMVKV-SDDF 342 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + +DYAH + SLE +L +R GR++ VFGCGG+R + +R MG+++ LAD ++T Sbjct: 343 TLMIDYAHNAMSLESLLATLRDYDPGRLVTVFGCGGNRSRTRRFEMGEVSGKLADFTVIT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 DNPR E+P+ I +II GI + +R EAIR AIE DV+++AGKGHET Sbjct: 403 SDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKGHETY 462 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 + + M D +I E+L Sbjct: 463 QEIKGVKYDMD-DRVLIAEVL 482 >gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] Length = 486 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 244/465 (52%), Gaps = 46/465 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR G IF+A G +G+ + QA+ GA AI+ SS Y+ F + ++ Sbjct: 26 VRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAIAIL-SSLYN--PFLSVVQ-- 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +V ++ + A+R Y + +++ VTGT+GK++V++ +++ + G + + Sbjct: 81 ---IVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSALARELMEYKGRCTGLV 137 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI ++R+ TTP I L K + + Q ++ VE SS GL R+ + Sbjct: 138 G---TIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVSSIGLALGRVRETE 194 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK +LF LP+ A++ +D Y++ ++ + Sbjct: 195 FLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS-LPEHGVAVVNSDCEYAQSFLEISPAR 253 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314 G V Y +H + A + + S G FD L+ L GE VYN Sbjct: 254 G-----VSYA---VHQE---ADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGEHNVYN 302 Query: 315 ALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 L A + I G D A ++ ++ L GR E V + IY+DYAHT ++L+ + Sbjct: 303 VLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGP--CPIYIDYAHTPDALDNVC 360 Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 K + + GR+I+VFGCGGDRD KRPIM K+A + ++VT DNPR+EDP++I A+ Sbjct: 361 KILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVA-ETYGFSVVTSDNPRTEDPDQIIAD 419 Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I G ++ + +R AI AI M +D+++VAGKGHE I Sbjct: 420 ICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVYQI 464 >gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [marine actinobacterium PHSC20C1] Length = 505 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 225/462 (48%), Gaps = 37/462 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + +FVAI + +I A+AQGA A++V + + + + + + Sbjct: 41 DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAA-----EGVELDKQVFAI 95 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 N + + A G HP +++ +TGT+GK+S A + Q Q+ G++S IG T Sbjct: 96 ANLHEVIGRMADAFVG-HPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIG---T 151 Query: 153 ISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + R +TTP + + L GV +V++E SSH L+Q R+DG+ Sbjct: 152 LGAGITGERRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIV 211 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +FTN RDH+DYH T + Y K ++F LP + A++ DDA ++ G R Sbjct: 212 AFTNFTRDHLDYHGTMEEYAAQKAKIF--TLPGVTTALLNLDDAAAENHFHNTLPEGMR- 268 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 +G + V A H V ++ EG +FD + L G F V N L Sbjct: 269 -GIGMTSRGHSEASVRADH----VQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTC 323 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A + A GI+ + E L L V GR + N + + VD HT +++ + +R Sbjct: 324 ATVLWAQGIEPQAIAEALAPLEPVLGRMTRIRENDKLPLVVVDAGHTPDAVRQAVTALRE 383 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 RI+ VFG GDRD GKRP M +I + +D+ +VTDD+ +ED ++I A I G Sbjct: 384 SGHTRIVTVFGATGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEH 443 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 IE +R AI AI+ N DV+++ GKGHE I+ N Sbjct: 444 PERVIEIRDRASAIAYAIDAANPDDVVLLQGKGHEPYQIIGN 485 >gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704] Length = 504 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 158/487 (32%), Positives = 241/487 (49%), Gaps = 44/487 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ ++ +DSR + G +FV I G DGH +I A+GA A++V I Sbjct: 36 EVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYIDDVAAKGAAAVIVERPVDAPKGLTVI 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R VD+TR L+L ++ +G +P L V G +G + V+ I + G Sbjct: 96 R-------VDDTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYMVKSILEGVG-- 145 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++G TI + D + TTP + + + ++ G V +E SS GL HR Sbjct: 146 -HKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQMAEAGCDSVVMEVSSQGLMLHRT 204 Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 GI+ G FTNLG DHI + H+ + Y K LF + + I DD + ++V Sbjct: 205 AGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGILFTQC----NLGIANVDDRWYEDVF 260 Query: 258 KRAHNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 K NA C+V + G+ K H+ + + K QV+ + +FD +PG+F Sbjct: 261 K---NATCKVETFGFSEKADLRATDVQHISRPGYLGVKYQVSGLM---NFDVEIDIPGDF 314 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 VYN+L A +C + + L K+ V GR E V S + +DYAH + SLE Sbjct: 315 SVYNSLTAIAVCRHFDVPVENIKTAL-KVAKVKGRIEMVKV-SDDFTLMIDYAHNAMSLE 372 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L +R RI+ VFGCGG+R + +R MG++A L+D ++T DNPR E+P+ I Sbjct: 373 SLLLTLRDYHPQRIVTVFGCGGNRSKTRRYEMGEVAGRLSDFTVITSDNPRFEEPQAIID 432 Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +II G+ +I +R EAI+ IE DV+++AGKGHET + + M Sbjct: 433 DIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGKGHETYQEIKGVKHDMDERV 492 Query: 487 DIIREIL 493 +IREIL Sbjct: 493 -LIREIL 498 >gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Nigg] gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum Weiss] gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia muridarum MopnTet14] gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase Length = 483 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 244/465 (52%), Gaps = 46/465 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR G IF+A G +G+ + QA+ GA AI+ SS Y+ F + ++ Sbjct: 23 VRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAIAIL-SSLYN--PFLSVVQ-- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +V ++ + A+R Y + +++ VTGT+GK++V++ +++ + G + + Sbjct: 78 ---IVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSALARELMEYKGRCTGLV 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI ++R+ TTP I L K + + Q ++ VE SS GL R+ + Sbjct: 135 G---TIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVSSIGLALGRVRETE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK +LF LP+ A++ +D Y++ ++ + Sbjct: 192 FLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS-LPEHGVAVVNSDCEYAQSFLEISPAR 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYN 314 G V Y +H + A + + S G FD L+ L GE VYN Sbjct: 251 G-----VSYA---VHQE---ADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGEHNVYN 299 Query: 315 ALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 L A + I G D A ++ ++ L GR E V + IY+DYAHT ++L+ + Sbjct: 300 VLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGP--CPIYIDYAHTPDALDNVC 357 Query: 374 KNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 K + + GR+I+VFGCGGDRD KRPIM K+A + ++VT DNPR+EDP++I A+ Sbjct: 358 KILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVA-ETYGFSVVTSDNPRTEDPDQIIAD 416 Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I G ++ + +R AI AI M +D+++VAGKGHE I Sbjct: 417 ICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVYQI 461 >gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 139/460 (30%), Positives = 228/460 (49%), Gaps = 24/460 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++++ DSR + +F I G DGHLF +A GA V S Q + Sbjct: 24 VDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGANVFVASKPIKEQ------VGD 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +P++ V + + ++LFA+ YG EN+ + VTGT+GK++V V + + G + I Sbjct: 78 SPVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVTHMVDYLLEELGKPTALI 137 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + R TTP + + + L + G +E SSH L R+ GI Sbjct: 138 GTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEVSSHALQLGRVWGIDYNV 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP--AIIYADDAYSKEVMKRAH 261 FTNL +H+D H+T + Y +AK LF +L E P AI+ D Y + A+ Sbjct: 198 AVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVAILNRDQEYFGQF---AY 254 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + ++S G+ + I ++ + ++V G+ + P+ G F VYN L A G Sbjct: 255 STSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPMIGLFNVYNVLAAFG 314 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + GI +E + K V GR + + + ++ +D+AHT + LE +L + + Sbjct: 315 VAMVNGIPLRKAIEKIAKFPGVGGRMQLI-QKGQPFQVIIDFAHTPDGLENVLSTLEEVK 373 Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 R+I + G GG+RD RP +G+IA + +D I+T DNPR E EKI +EI+ G Sbjct: 374 INRVITIMGHSGGNRDSSMRPELGEIAFEKSDYVILTADNPRQESLEKIYSEIVSGRKNE 433 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + +R +AI A+E+ + D+L+ AGKG E ++ Sbjct: 434 NTPYECVDDRKQAIERALELAQEGDILLFAGKGVEPYQVI 473 >gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens 200] Length = 500 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 142/469 (30%), Positives = 230/469 (49%), Gaps = 34/469 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ NE++ DSR I+ G +F+A+ G++ DG FI +A+ GA ++V + + Q + Sbjct: 17 DQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLL 76 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKH-----PE-NILAVTGTSGKSSVASFVQQI 136 N I R+ ++ A R H P I+ +TGT+GK+S + + Q+ Sbjct: 77 GDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQL 136 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + +G + D+ TT I L + L +QG + ++E SSHGL Sbjct: 137 VTSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLV 196 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+D + FTNL RDH+DYH ++Y AK LF ++ DD + Sbjct: 197 QGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR--FSTLGHGLLNLDDPVGET 254 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + ++ +G + A + K +G ++P GE Q+++ Sbjct: 255 WLIELKDMAAQIWGFSIEGH-----QAAAFYTKN-TQFDDQGVSATLVWP-EGETQIHSP 307 Query: 316 LVAAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L+ A + G D + E ++ L V GR E T + + VDYAHT Sbjct: 308 LLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERF-TTADNITLVVDYAHT 366 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD +VT DN RSEDP Sbjct: 367 PDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQYADRIMVTSDNARSEDP 426 Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +I ++II G+ + + +RI AI+ + + D++++AGKGHET Sbjct: 427 AQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLAGKGHET 475 >gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 487 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/457 (32%), Positives = 238/457 (52%), Gaps = 37/457 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++ DSR + G +F A G++ DGH F+ AIA+GA A++V +L + Sbjct: 24 IADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEVAL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P LVV + R + + +G+ E +++ +TGT+GK++ + F+ I +G + I Sbjct: 75 IPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLAGRRTGLI 134 Query: 148 GPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + F NR TTP L + L + GV V +E SSHG+DQHR+DG Sbjct: 135 GTIE--ARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRIDGTSF 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNA 263 G FTNL +H+DYH T + Y+ AK +LF LP+ + A+I D + + + Sbjct: 193 RIGVFTNLSPEHLDYHGTIEQYYAAKAQLF---LPERTKQAVIGTDTEWGVRLATQ---- 245 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEG-KDFDFLFPLPGEFQVYNALVAA 319 R+ +V Y +V + + T+ V G + + P+ G YNA A Sbjct: 246 -VRIPAVTYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAV 304 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + A+GI+ + L + H V GRF+ + + + VDYAHT +SL ++ R + Sbjct: 305 AVAEALGIEGDTIERGLAECHQVAGRFQRIDAG-QPFTVVVDYAHTPDSLRALIATARAL 363 Query: 380 T-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 + GR+I+V G G RD+ KRP +G+ A AD+AI+T DNP EDP +I A+++ G Sbjct: 364 SPKGRVILVAGARGRRDRLKRPELGRAAA-TADVAILTADNPGDEDPGEIVAQLLAGTLD 422 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + +R AI AIE+ + DV+++ G+GHE Sbjct: 423 VDHKQIIVELDRRGAIGHAIEIAEESDVVLIVGRGHE 459 >gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] Length = 483 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 157/470 (33%), Positives = 225/470 (47%), Gaps = 29/470 (6%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99 + AG + V I + G A+AQGA A+ L D S+ I+ V Sbjct: 24 VGAGDVAVWIPSHPRMGLTRPEDALAQGAAAV-------LTDDRELAASDPRIVFVPALA 76 Query: 100 KFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 +S A+ YG HP ++AVTGT GK+S F Q+ R GL + +G T + Sbjct: 77 DEVSGLAASFYG-HPGRALKVVAVTGTCGKTSTTFFTAQLADRVGLGAAVMG-TLGMGRL 134 Query: 157 A--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +D+ TTP L + L+ +G+ V++EASS GL+ RL G+ + AG FT LGR Sbjct: 135 GDLRDSGHTTPQHAMLQRELARYVDEGLGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGR 194 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+D H+T +AY AK RLF+ P+ A++ ADD + +R C V G + Sbjct: 195 DHLDRHRTMEAYAAAKWRLFDAYAPEF--AVLGADDPTGEAWARRLRER-CAVTVFGAEP 251 Query: 275 K------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + +H++ + V ++ + G FQ +N A +G+ Sbjct: 252 RPELDLPRVHIEGLEQQRAGLGVRLASTWGEAAVSIRALGAFQAHNLAAALATLARLGVP 311 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387 ++ E L PGR E +DYAHT SL L + R + GR+ V Sbjct: 312 WPELVVACEGLSGPPGRMEPYAAPGT-PLCLIDYAHTPESLTFALDSARALAPGGRVWCV 370 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GN 444 FGCGG RD GKR MG A AD+ +VT DNPR EDPE I A ++ G+ G Sbjct: 371 FGCGGGRDSGKRGEMGAAAEGSADVVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGE 430 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R +AI A++ +DV+VVAGKGHE V I + + S D D + +G Sbjct: 431 RGQAITRALDEAAPEDVVVVAGKGHERVQIFADRRVEWS-DRDFVAAYMG 479 >gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium vanbaalenii PYR-1] Length = 497 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 150/453 (33%), Positives = 226/453 (49%), Gaps = 16/453 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ + Q G +F A+ G++ G + +A+ +GA A++ +A + ++ Sbjct: 20 QVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAE-IASRGAP 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+LV + R L AS +YG+ ++ ++ VTGTSGK++ V+ + +G + Sbjct: 79 DVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRVAGL 138 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I Q LTTP L L+ + QGV V +E SSH L R+DG+ Sbjct: 139 IGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGRVDGVSFA 198 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264 G FTNL RDH+D+H T + YF+AK RLF+ + ++I DD + + + RA Sbjct: 199 VGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARARRP- 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V + G + + V + G LPG + V N L+A L A Sbjct: 258 VTVSTTGPADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLAIALLDA 317 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITSG 382 +G+ + VPGR E V RG VDYAH +L +L+ +R +G Sbjct: 318 VGVSPEQAAPGVRDA-TVPGRLESV---DRGQPFLALVDYAHKPGALRAVLQTLREQCTG 373 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIPG 438 R+ VVFG GG+RDQGKR MG++A +LAD+ +VTDDNPR EDP I A Sbjct: 374 RLAVVFGAGGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRAAILAGAAGARAE 433 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R AI A D++++AGKGHE Sbjct: 434 VVEIGDRRAAIGHAAGWARAGDIVLIAGKGHEA 466 >gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Amycolatopsis mediterranei U32] Length = 514 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 161/465 (34%), Positives = 245/465 (52%), Gaps = 37/465 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + + ++H+ G +F A+ G + G F QA+A GA A++ +A + + A Sbjct: 38 ELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQAVAAGAVAVLTDAAGA--ERPALR 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 + PILV + R L A+ +YG+ P ++L VTGTSGK++ + V Q +GL+ Sbjct: 96 DAGVPILVHPDPRAALGEIAAWIYGE-PSLELSVLGVTGTSGKTTTSYLVDAGLQAAGLT 154 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + IG T+ + +RL TTP L L+ + +GVTHV +E SSH L R+ Sbjct: 155 TGLIG---TVETRIAGDRLVSGFTTPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRV 211 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +G + G+FTNL +DH+D+H+ Q YF AK LF+ + + ++ D A+ + ++ Sbjct: 212 NGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDG---RSTHEVVVVDSAWGQALLT- 267 Query: 260 AHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYN 314 + ++V G + + +Q T+ +G PLPGEF V N Sbjct: 268 -----PQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGARAAARIPLPGEFNVAN 322 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A++AA + G+ ++ L ++ V PGR E V + VDYAH ++ L Sbjct: 323 AVLAAAILSTAGVSLEHIVAGLAQVQV-PGRMERVHVGQEFTAV-VDYAHKPAAVAQGLD 380 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R T GRII V GCGGDRD KRPIMG+ A +D+ IVTDDNPRSEDP IRA ++ Sbjct: 381 ALRARTEGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDDNPRSEDPAAIRAAMLA 440 Query: 435 GI----PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P +E G+R EAI A+ + D++ +AGKGHE+ Sbjct: 441 GARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHES 485 >gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Rv] gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis AF2122/97] gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis H37Ra] gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis F11] gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat e ligase MurE [Mycobacterium tuberculosis H37Rv] gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis AF2122/97] gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE [Mycobacterium tuberculosis H37Ra] gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis F11] gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 1435] gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 605] gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu007] gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu008] gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu009] gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu010] gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis W-148] gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis KZN 4207] Length = 535 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507 >gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 478 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/478 (29%), Positives = 242/478 (50%), Gaps = 32/478 (6%) Query: 12 PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 P + +Q+ + + +N+ ++S I+ +FV G DGH + QA+ +GA A+ Sbjct: 4 PAINSQIEVL----KSLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAV 59 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSS 128 + + + + P+++ D+ + L+L + Y HP + VTGT+GK++ Sbjct: 60 IANRPLDI---------DIPVIMTDSYYQSLALV--KAYYGHPHQKIKHIGVTGTNGKTT 108 Query: 129 VASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 V+ + QI ++ S++ +G S + +N TTP + L ++ + Sbjct: 109 VSHCLNQILNQTTTSAYIGTLGAKLAGSDYPLEN--TTPDGVTLLNLFHQMAQRETEFNL 166 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L Q R + L G TN+GRDH+DYH+T+ AY AK++L + + P + A+I Sbjct: 167 MELSSHALAQDRAGFVSLQIGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGT-AVI 225 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304 DD ++ ++RA + V++ G + H+ V + ++G+ FD Sbjct: 226 NLDDPHAAAAIERA-SGRVNVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNS 284 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +P F V NAL A +++G S+ + L+ + GR +F+ N+ G VDYAH Sbjct: 285 QMPFTFNVENALAIAASLLSLGWQSSRIAAALQTIVAPDGRAQFLSLNN-GATGLVDYAH 343 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 ++ L +L+++R T GR+IVV G GDR Q I G + LAD A+ T DNP D Sbjct: 344 NADGLSKLLEDVRPYTKGRLIVVTGVTGDRIQDASGI-GVLCSQLADTAVFTSDNPMGVD 402 Query: 425 PEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 E I + + +P F E +R EAI A ++ D++VV GKG ET ++NG+ Sbjct: 403 QEDIFRALTSQVSKVPHF-EISDRAEAIEFAKQLSVAGDLIVVCGKGSETHQYISNGK 459 >gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. B14905] Length = 493 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 143/465 (30%), Positives = 235/465 (50%), Gaps = 34/465 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR +Q +FV I G DGH + +A+ GA +V L + A + Sbjct: 27 QVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGETIAQV-- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142 +V +T + + L A++ + ++I + VTGT+GK+SV +Q I ++S L Sbjct: 85 -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 139 Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S F + S+ + L+T I+ AK +G +++E SSHGL RL Sbjct: 140 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 193 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G+ FTNL DH+D+H T + Y +AK LF +L L K ++ ADDA+S+ Sbjct: 194 AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 251 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314 + A V + G + + + + ++ + VE + + L GEF +YN Sbjct: 252 -RYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLGEFNIYN 310 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G ++E +E+L V GR E V ++ +++VDYAHT +++E ++ Sbjct: 311 VLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSD-LPVQMFVDYAHTPDAIEKAIE 369 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I + G GG+RD+ KRP M + A A+ I+T D+PR ED I ++ Sbjct: 370 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYNSITGDLAK 428 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ F G+R EA+R AIE+ D+++ AGKGHE I+ N Sbjct: 429 GMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQIIEN 473 >gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. e14] Length = 506 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 152/478 (31%), Positives = 236/478 (49%), Gaps = 37/478 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +QL R + ++ DSR ++ G ++ A+ G + G F+ QA + GA A++ Sbjct: 19 ELADQLGAA-QPDRTADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAVAVL 77 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 + + + + P+L V++ R + A+ LYG+ ++L +TGTSGK++ A Sbjct: 78 TDPGGAERAAA----TGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTTTA 133 Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185 V+ GL + + G T+ + + R+ TTP L + + +GV V Sbjct: 134 YLVE-----GGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAV 188 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++E SSH L R+DG FTNL +H+++H + YF AK +LF + I Sbjct: 189 AMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPA--RSRLGI 246 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLF 304 + ADD Y + + + A + G+ + V T++ EG Sbjct: 247 VNADDEYGRRLAEEATVPVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARS 306 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361 PLPG F V N L A A G+D+ + + + VPGR E V G+ Y VD Sbjct: 307 PLPGPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDA----GQPYLAVVD 362 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++E +L+ +R +T GR+ VV GCGGDRD+ KR MG LAD A++T DNPR Sbjct: 363 YAHKTDAVESVLRALRKVTKGRVHVVLGCGGDRDRTKREPMGAAVARLADTAVLTSDNPR 422 Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 SEDP I A ++ G +P E+G + AI A+ D ++VAGKGHE Sbjct: 423 SEDPLAILAAMLQGAASVPAH-ERGEVLLFEERAAAIAAAVARARPGDTVLVAGKGHE 479 >gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814] Length = 487 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 154/477 (32%), Positives = 242/477 (50%), Gaps = 38/477 (7%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L+ +L +Q ++ ++ E+ +DSR + G +FV I G DGH ++ Q +GA A+ Sbjct: 5 QLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQVAEKGAAAV 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 +V +D A ++ V+NTR L+L ++ +G +P L V G +G + Sbjct: 65 IVE-----KDVEAP--EGLTVIKVENTRYALALTSAAYFG-YPAEKLKVIGITGTKGKTT 116 Query: 132 ---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 V+ I + G+ ++G TI + D + TTP + K S + +G Sbjct: 117 TTYMVKSILEEVGI---KVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEMVEEGCEC 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKES 242 V +E SS GL R GI G FTNLG DHI + H+ Y K LF++ Sbjct: 174 VVMEVSSQGLKLDRTAGIPFEIGIFTNLGEDHIGPNEHKDFNEYKYCKSLLFKQC----K 229 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-K 298 I DD + +++ K +A C+V + G+ K I V I + + V G Sbjct: 230 IGIGNVDDKWFEDIFK---DATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAGLM 286 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 DFD +PG+F VYN+L A +C G+ + + L K+ V GR E + S + Sbjct: 287 DFDVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKAL-KVARVKGRIEMIKV-SDDFTL 344 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAH + +LE +L +R RI+ VFGCGG+R + +R MG+++ L+D I+T D Sbjct: 345 MIDYAHNAMALESLLDTLRDYHPERIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIITSD 404 Query: 419 NPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 NPR E+P+ I +I+ G+ +I +R EAI+ AIE DV+++AGKGHET Sbjct: 405 NPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAGKGHET 461 >gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 210] gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN R506] gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN V2475] gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis C] gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase murE [Mycobacterium tuberculosis CDC1551A] Length = 521 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 45 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 101 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 161 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 219 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 279 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 280 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 335 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 336 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 393 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 394 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 452 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 453 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 493 >gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. BL107] Length = 502 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 232/460 (50%), Gaps = 17/460 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+SDSR G +FV + G++ DG LF QA+ GA A V+ A + D S Sbjct: 24 QIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALNAGAAAAVIGPAAAAVDPPGD--S 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V D L A+ + + E +L VTGT+GK++ ++ + G S+ Sbjct: 82 DQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGKTTTTYLIEHLALACGRSTAL 141 Query: 147 IGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + S + TT L L+ +S G ++E SSH L QHR+ G + Sbjct: 142 FGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLAAMEISSHALAQHRVAGCRFA 201 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH + + YF AK LF E L + PA ++ DD + ++ +R A Sbjct: 202 GAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPARAVVNGDDPWGAKLAERL-GA 260 Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 C S+ + ++ +C H IS G+ F PL G F + N L A G+ Sbjct: 261 QCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGA-FQSPLLGRFNLMNLLQAVGVL 319 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + +L + VPGR E V + + VDYAHT + LE L R Sbjct: 320 LQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTTLPTVLVDYAHTPDGLENALAAARP 379 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G++I VFGCGGDRD+GKRP M IA LAD +VT DNPR+EDP +I +++ GIP Sbjct: 380 FAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPLRILEDVVKGIPD 439 Query: 439 FIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +++ +R AI I + D+++VAGKGHE I+ Sbjct: 440 GVDRVVDPDRGAAIAQTIAEADAADLVLVAGKGHEDYQIL 479 >gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale M104/1] Length = 490 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 158/496 (31%), Positives = 240/496 (48%), Gaps = 62/496 (12%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ L+ + D+ L I +I+ + DSR ++ +FV I G D H F Sbjct: 1 MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114 IP + +GA A+VV + TPI + VD+TR L+ ++ + Sbjct: 53 IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDDTRLALACMSAAYFDYPA 100 Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168 E I + T K + V+ I + +G+ + IG TI S D R+ TTP Sbjct: 101 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 157 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226 + + + +G+ V +E SS L HR+ G G FTNL DHI H+ + Y Sbjct: 158 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 217 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280 + K LF + I DD + + +MK H C+V + GY+ + + LK Sbjct: 218 MHCKSLLFRQC----RLGIFNGDDEHLEGIMK-GHT--CQVETYGYKSTNNLVAENVELK 270 Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H V V G DFD +PG+F VYN+L A +C +D + E L Sbjct: 271 KE---HGALGVKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 325 Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 HV V GR E V R + +DYAH + +LE +L ++ GR++ +FGCGG+R + + Sbjct: 326 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 384 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454 R MG+++ LAD+ +VT DNPR E+P I +I+ G+ ++ +R EAIR +E Sbjct: 385 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 444 Query: 455 MLNKQDVLVVAGKGHE 470 D++V+AGKGHE Sbjct: 445 NAKDGDIIVLAGKGHE 460 >gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM 17629] Length = 490 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 158/496 (31%), Positives = 240/496 (48%), Gaps = 62/496 (12%) Query: 1 MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+ L+ + D+ L I +I+ + DSR ++ +FV I G D H F Sbjct: 1 MKLEKLLERMDYKVLAGSTDI--------EISTLVYDSRKVEKASVFVCISGAVSDAHDF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHP 114 IP + +GA A+VV + TPI + VD+TR L+ ++ + Sbjct: 53 IPDVVKKGAAAVVVE------------KDVTPIEGVTYIKVDDTRLALACMSAAYFDYPA 100 Query: 115 ENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPI 168 E I + T K + V+ I + +G+ + IG TI S D R+ TTP Sbjct: 101 EKIKTIGITGTKGKTTTTYMVKSILESAGIKTGLIG---TIESICGDKRIPSANTTPESY 157 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AY 226 + + + +G+ V +E SS L HR+ G G FTNL DHI H+ + Y Sbjct: 158 RVQELFKEMVDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKDFADY 217 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLK 280 + K LF + I DD + + VMK H C+V + GY+ + + LK Sbjct: 218 MHCKSLLFRQC----RLGIFNGDDEHLEGVMK-GHT--CQVETYGYKSTNNLVAENVELK 270 Query: 281 KVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H + V G DFD +PG+F VYN+L A +C +D + E L Sbjct: 271 KE---HGALGIKYHVSGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALH-- 325 Query: 340 HV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 HV V GR E V R + +DYAH + +LE +L ++ GR++ +FGCGG+R + + Sbjct: 326 HVSVKGRIEIVPVTKRY-TLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSR 384 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454 R MG+++ LAD+ +VT DNPR E+P I +I+ G+ ++ +R EAIR +E Sbjct: 385 RYEMGEVSSRLADLTVVTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCME 444 Query: 455 MLNKQDVLVVAGKGHE 470 D++V+AGKGHE Sbjct: 445 NAKDGDIIVLAGKGHE 460 >gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 498 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ I+ + DSR + G +F+A+ G K+DG FI QAI + A AI+ + + Sbjct: 19 KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 N ++ + +SL A+R Y K P I+ +TGT+GK++V + Q G Sbjct: 79 IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + Q TT SPI++ LS + + V++E SSHGL QHR+ + Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+ + Y +AK LF K I+ ADD Y K +K+ N Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255 Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311 +++ Y K+I+ + +N + I+ E G+ L G F Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GRFN 311 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L++ + +G + ++ EK+ V GR E + I +DYAHT ++L+ Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L I + I +FGCGG+RDQ KRPIMG IA ++D I+T+DNPR+E +KI + Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I++G + +R +AI A ++++AGKGHE I+ N S D I Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489 Query: 489 IREILG 494 + +LG Sbjct: 490 VLNLLG 495 >gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis KZN 4207] gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu001] gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu003] gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu004] gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu005] gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu006] gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu011] Length = 517 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 41 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 98 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 276 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 332 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 390 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 448 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 449 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 489 >gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 517 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 41 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 98 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 276 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 332 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 390 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 448 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 449 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 489 >gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 548 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/476 (30%), Positives = 228/476 (47%), Gaps = 30/476 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSRH+ G ++ A+ G + G F ++ + S Sbjct: 59 VRGVTLDSRHVLPGDLYAALPGARHHGAQFA----------GQARASGAAAALSDRPLPG 108 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVV + R L A+ L+ HP + + VTGT+GK+S + + +G + Sbjct: 109 LPTLVVPDPRAVLGPLAAHLH-DHPSHHLEVYGVTGTNGKTSTTHLLDAGLRSAGHRTGM 167 Query: 147 I-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 I G +++ + TTP L + L+ L QG T +VE SSHGL HR+DG + Sbjct: 168 ISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHGLALHRVDGTRFR 227 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A FTNLGRDH+D H Q++YF AK LF + + A++ DDA+ + + + Sbjct: 228 AAVFTNLGRDHLDLHGDQESYFAAKASLFAPH--RCALAVVNVDDAHGRRLAAQVRVPVT 285 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G + +V A ++ + G D L G QV NAL A A Sbjct: 286 TFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVDNALGAVAALHAG 345 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSG 382 G++ VL +E L V GR + + G+ + VDYAH + +L +RT+T G Sbjct: 346 GLNVEDVLRGMEDLTAVSGRLQRIDE----GQPFLALVDYAHNVAAQRRLLPFLRTLTGG 401 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441 R++VV G G+RD GKR +G+ A L D+ IVTD++P +DP +R + G G Sbjct: 402 RLVVVLGATGERDPGKRGPLGRTAAQLGDVVIVTDESPHDDDPAALREAVAGGARGAASA 461 Query: 442 ----KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +R AIR A+ + + DV+VV+G+GH+ +V G + D +R L Sbjct: 462 QVHVEADRDRAIRLAVSLADPGDVVVVSGRGHDG-QLVAGGRTRAFDDGARLRAAL 516 >gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Verminephrobacter eiseniae EF01-2] Length = 517 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 146/487 (29%), Positives = 225/487 (46%), Gaps = 43/487 (8%) Query: 23 MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 + W R R + SDSR I G F+A G DG + AIA+GA A +V A Sbjct: 25 LPWLRARVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAF 84 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV------ 133 + + + + A++ + + ++LAVTGT+GK+S A ++ Sbjct: 85 AFPAAPGAS-LASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNG 143 Query: 134 ---QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 +C +G + P + +TTP P+ L +AL +G++ ++EAS Sbjct: 144 RAKSPVCALAGTLGLGVPPVLETAG------MTTPDPLRLQRALRQFVDRGLSACAIEAS 197 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 S GL+Q RL G ++ A FTN +DH+DYH + AY+ AK LF+ P A+I DD Sbjct: 198 SIGLEQGRLAGTQIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFD--WPGLQAAVINIDD 255 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ + S+ QG + + + + T+ + G Sbjct: 256 PAGAQLHAELAGRVPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGH 315 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + + N L ++G A L+ L VPGR + + + + VDYAHT ++L Sbjct: 316 YNLQNLLAVLATLRSLGWPLAEALQAGAGLQPVPGRMQQLALAGQP-LVVVDYAHTPDAL 374 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L+ +R + + GR+ VFGCGGDRD GKRP+MG A AD ++T DNPRSEDP+ Sbjct: 375 AKALQALRPLAARRAGRLWCVFGCGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPD 434 Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIE----------MLNKQDVLVVAGKGHETVHIVT 476 I +I+ GI +R A+RT + DVL++AGKGHE V Sbjct: 435 AILRQILQGI-------SRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKGHEDSQEVA 487 Query: 477 NGEKKMS 483 + S Sbjct: 488 GVRRPFS 494 >gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 497 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 154/494 (31%), Positives = 249/494 (50%), Gaps = 31/494 (6%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E + +F ++ + ++ +DSR ++AG F+AI G DGH I + +AQGA Sbjct: 6 KELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAIAEVVAQGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSG 125 + I+V L TI +N ++VD++ + ++ A++ Y + P ++AVTGT+G Sbjct: 66 KLIIVEQ---LPANYQTIPAN--FVLVDSSFRAQAILANKFY-QEPSRKLKVVAVTGTNG 119 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQG 181 K++ +S + + + +IG T+ D TTP+ ++L + + +G Sbjct: 120 KTTTSSMISDLLTSLDHKTGKIG---TLHYKVADTYYPAVNTTPNALHLQALFAEMLERG 176 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---L 238 +EASSH L RL + FTNL R+H+D+H+T Y AK LF +L Sbjct: 177 CQDAVIEASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQLGQAF 236 Query: 239 PKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + P AII DD Y EVM +A A S+ + + ++ + Sbjct: 237 HQGRPRLAIINKDDPYW-EVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKLHFN 295 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + F+ P+ G + V N L AA LC+A ID A +L + V GR E + N + Sbjct: 296 DQVFELELPMRGHYNVSNYL-AAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALN-K 353 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413 + VD+AHTS++LE +++ + + GR++ + G GG+RD G RP +G + + AD Sbjct: 354 DFDVVVDFAHTSDALERVMQELVSHKQGRLLALMGHSGGNRDSGARPGIGDVLFNYADYI 413 Query: 414 IVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + T DNPR ED KI E+I H + +R A+ T +EM DVL+ AGKG E Sbjct: 414 VFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKGGEG 473 Query: 472 VHIVTNGEKKMSVD 485 I+ G++K+ D Sbjct: 474 YQII--GDQKIPYD 485 >gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis CDC1551] Length = 581 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 105 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 161 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 162 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 220 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 221 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 279 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 280 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 339 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 340 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 395 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 396 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 453 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 454 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 512 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 513 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 553 >gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 02_1987] Length = 535 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 155/461 (33%), Positives = 230/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 293 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507 >gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 498 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ I+ + DSR + G +F+A+ G K+DG FI QAI + A AI+ + + Sbjct: 19 KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDKHGIFKY 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 N ++ + +SL A+R Y K P I+ +TGT+GK++V + Q G Sbjct: 79 IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + Q TT SPI++ LS + + V++E SSHGL QHR+ + Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+ + Y +AK LF K I+ ADD Y K +K+ N Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255 Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311 +++ Y K+I+ + +N + I+ E G+ L G F Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GHFN 311 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L++ + +G + ++ EK+ V GR E + I +DYAHT ++L+ Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L I + I +FGCGG+RDQ KRPIMG IA ++D I+T+DNPR+E +KI + Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I++G + +R +AI A ++++AGKGHE I+ N S D I Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489 Query: 489 IREILG 494 + +LG Sbjct: 490 VLNLLG 495 >gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 160/486 (32%), Positives = 242/486 (49%), Gaps = 46/486 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++SDSR + G +F A VG+ DG +I A+ +GA A+V Y F+ + + P Sbjct: 23 QLTSDSRRVAPGDVFFAYVGDA-DGRSYIADAVERGAAAVV----YEAAGFTWPAQIDVP 77 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR-SGLSSFQIG 148 L V + + A+ YG+ + +L AVTGT+GK+S A ++ R +G S+ + Sbjct: 78 HLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVI 137 Query: 149 PTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 T + SF TTP + L ++L L+ V +++EASS GL Q R++G Sbjct: 138 GTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + + TN RDH+D+H Q Y +AK +LF+ P A++ DD + ++ Sbjct: 198 MHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQ--WPGLKHAVVNLDDDMGQRLLPLL- 254 Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LP 307 A +V +GY QG H Q+ S G F P L Sbjct: 255 -AERKVPVIGYAIADEQGGDPHGVPTL---RASQLRSSHTGTVFHVDSPFGSGQVKTQLV 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTS 366 G F V N L G+ + G+ V+ L PGR +F G + I +DYAHT Sbjct: 311 GRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFGGPDVP--LIVIDYAHTP 368 Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++L+ L +R + + G++ VFGCGGDRD GKRP MG+IA + AD ++T DNPRSE Sbjct: 369 DALDKTLSTLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIA-EQADQVVLTSDNPRSE 427 Query: 424 DPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 DP+ I +I G+ + +R AI AI K DV+++AGKGHE+ + G+K Sbjct: 428 DPQAIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIA-GKKL 486 Query: 482 MSVDCD 487 +D D Sbjct: 487 PFLDAD 492 >gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aeromicrobium marinum DSM 15272] Length = 503 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 152/493 (30%), Positives = 229/493 (46%), Gaps = 22/493 (4%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E+ QL + P + + ++ + G +F A+ G + G + QA +GA A++ Sbjct: 19 EVARQLGVRPPPV-DPSVTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERGAVAVL 77 Query: 73 VSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 A ++ D + P +VVD+ R+ L + L+ HP + G +G + Sbjct: 78 TDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLH-DHPTSAFTTLGVTGTQGKTT 136 Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 G + IG T I + LTTP L + + + V ++E S Sbjct: 137 TTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVCAMEVS 196 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SH L + R+DG F NLGRDH+D+H YF+AK LF + A++ DD Sbjct: 197 SHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFTPDHARR--AVVNVDD 254 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLP 307 + + ++ R V + G+ + ++ + V G + D PLP Sbjct: 255 DHGRRLLDRTD---LPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVPLP 311 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHT 365 G F V NAL G D A + + VPGR E V RG VDYAH Sbjct: 312 GRFNVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMERV---DRGQPFTAVVDYAHK 368 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++ +L +R +T GR+++V G GGDRD GKRP+MG+ A AD+ +VTDDNPRSE P Sbjct: 369 PDAVTAVLTALRPVTPGRLVMVIGAGGDRDHGKRPLMGEAAARHADLVVVTDDNPRSERP 428 Query: 426 EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 IRA+++ G G +E G+R EAI A+ D +VVAGKGHE + Sbjct: 429 AAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKGHEQGQEIDGVVHP 488 Query: 482 MSVDCDIIREILG 494 S D ++ E+LG Sbjct: 489 FS-DRAVLEELLG 500 >gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica CNB-440] gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salinispora tropica CNB-440] Length = 514 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 227/468 (48%), Gaps = 49/468 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V+ S+ ++ G ++ A+ G + G F+ A GA A++ +AT Sbjct: 39 EPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLTDP----DGAAATA 94 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P+LVV + R L AS +YG ++ VTGT+GK+S A V+ + +G ++ Sbjct: 95 EVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVESGLRAAGHTT 154 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T + D+ TTP L L+ +GVT V +E SSH L R+ G++ Sbjct: 155 GLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHALAMGRVGGVR 214 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-------------ELLPKESPAIIYADD 250 G +TN G DH+D+H YF AK +LF+ LLP PA + Sbjct: 215 FTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDGRCEVEVLNHDDPALLPLHRPATVTYSA 274 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 A A AG GY +F +H +T+ LPG Sbjct: 275 AGDGAATWWADEAGGE----GYAQRFT-------LHGPDGLTLPAG-------VALPGRH 316 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNS 368 V NAL+A + +A G+ + + VPGR E V + RG VDYAH +++ Sbjct: 317 NVANALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVPSPGPVRG---VVDYAHKTDA 373 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + L +R ++GR+I + G GGDRD+GKRP+MG A + AD+ +VTDDNPR+EDP I Sbjct: 374 IVAALAALREFSTGRLICLLGAGGDRDRGKRPLMGVAAAEGADVVLVTDDNPRTEDPADI 433 Query: 429 RAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 RAE++ G+ +E R AI A+++ DV+ + GKGHE Sbjct: 434 RAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKGHE 481 >gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes str. 1/2a F6854] Length = 410 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 136/427 (31%), Positives = 208/427 (48%), Gaps = 39/427 (9%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M++A A + + F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQKATAAHIITFGIKQEADF----------QASNIKITSHGSTFDLG 284 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 P + G F VYN L A A+ I ++ +E + V GRFE V Sbjct: 285 TPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQE 344 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 I VDYAHT + L +L+ I R+ VV GCGGDRD+GKRP M KIA+D A I Sbjct: 345 FPVI-VDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATNPI 403 Query: 415 VTDDNPR 421 T +NPR Sbjct: 404 FTSNNPR 410 >gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium variabile DSM 44702] Length = 549 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 154/494 (31%), Positives = 233/494 (47%), Gaps = 61/494 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA----EAIVVSSAYSLQDF 82 ++ + + D+R + A +F+A+ G + G F Q+ E + V S Q Sbjct: 45 QQTVATAAIDARDVPADGLFMAVPGTRAHGARFAGQSAGHSVLTDEEGLGVLVDGSWQGT 104 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + LVVD+ R++L A+ ++G HP + V G + +S + + +R+ L Sbjct: 105 A---------LVVDDCRQWLGPVAAEIHG-HPSRDMTVIGVT-GTSGKTTTTYMMERALL 153 Query: 143 SSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + + LTTP L + + +GVTHV +E SSH L R Sbjct: 154 GHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARMRDEGVTHVVMEVSSHALVLGR 213 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA------IIYADDAY 252 + G+ FTNL +DH+D+H T + YF+AK LF E + PA ++ DD + Sbjct: 214 VRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTE---PQDPAGELPVPVVCVDDEW 270 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEF 310 + + R +A V + G + + V A+H Q VT+ ++ +PG F Sbjct: 271 GRRLAGRTGDATVTVSTDGEAATW-QVSDV-AVHPDGTQHVTVDRADGQVEYDLSIPGAF 328 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTS 366 V NA +A +A G D+++ E E VPGR E + +S + VDYAH Sbjct: 329 NVANATLALATLVAAGEDASIADELAEV--SVPGRMEKISGSSPQTAVDFLALVDYAHKP 386 Query: 367 NSLEMILKNIRT-----------ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++ +L + T GR+ VV G GG+RD KRP MG A +AD+ IV Sbjct: 387 GAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRPKMGAAAAAVADLVIV 446 Query: 416 TDDNPRSEDPEKIRAEIIHGI------------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 TDDNPR EDP IRA ++ G P E G+R EAIR A+ DV+V Sbjct: 447 TDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEAIRDAVGWARSGDVVV 506 Query: 464 VAGKGHETVHIVTN 477 VAGKGHE+ I+ + Sbjct: 507 VAGKGHESGQIIGD 520 >gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC 17982] Length = 526 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 145/464 (31%), Positives = 226/464 (48%), Gaps = 43/464 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VSSD ++ W+FVAI G K+ G F AI GA ++ Q F + P+ Sbjct: 50 VSSDD--CESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GVPV 105 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ-QICQR------SGLS 143 + V + R + + +Y + +AVTGT+GK++ + ++ I R G Sbjct: 106 IQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +GP S + R T +P+ +LA Y GV +E S+H L HR+D Sbjct: 166 ETHVGPISF-----EAVRTTAEAPVVARFLAATEQYECGAGV----IELSAHALSLHRVD 216 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKR 259 GI +FTNL DH+DY+ + YF AK LF P+ S ++ DD + + + ++ Sbjct: 217 GIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLF---TPEHSRHGVVCVDDEWGRRLAQQ 273 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNAL 316 A V ++ + ++ V + ++ G P+ GE + N Sbjct: 274 ATVPVTTVSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTA 333 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374 VA +++GID A V+ +E +PGR E V GG+ + VDYAHT +LE L+ Sbjct: 334 VAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTP-GGQPLVIVDYAHTPEALEWTLR 392 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R +TSGR+++VFG GDRD KR + +IA AD+ VTD+NPR+E P++IR ++ Sbjct: 393 STRELTSGRVVIVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRNYLLR 452 Query: 435 GI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI PG + R +A+R AI D +++ GKG E Sbjct: 453 GIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAE 496 >gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 498 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 153/486 (31%), Positives = 241/486 (49%), Gaps = 27/486 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ I+ + DSR + G +F+A+ G K+DG FI QAI + A AI+ + + Sbjct: 19 KKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDKHGIFKY 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 N ++ + +SL A+R Y K P I+ +TGT+GK++V + Q G Sbjct: 79 IKNVILIYFFKLSENVSLLANRFY-KEPGKRLKIIGITGTNGKTTVTQLINQWSTILGTK 137 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + Q TT SPI++ LS + + V++E SSHGL QHR+ + Sbjct: 138 TATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQHRVKEV 197 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+ + Y +AK LF K I+ ADD Y K +K+ N Sbjct: 198 PFYIAIFTNLTQDHLDYHENMEKYESAKWLLFST--HKVKKIILNADDQYGKIWLKKLLN 255 Query: 263 AGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQ 311 +++ Y K+I+ + +N + I+ E G+ L G F Sbjct: 256 FYTVAVTIQNRKQKKYSTKWINATNIEQ-NNNNSIYITFESSWGTGRISSCLI---GRFN 311 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L++ + +G + ++ EK+ V GR E + I +DYAHT ++L+ Sbjct: 312 VTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFI-IDYAHTPDALKK 370 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L I + I +FGCGG+RDQ KRPIMG IA ++D I+T+DNPR+E +KI + Sbjct: 371 TLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNEKEKKIIQD 430 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I++G + +R +AI A ++++AGKGHE I+ N S D I Sbjct: 431 ILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHEEKQIIQNRSINYS-DKKI 489 Query: 489 IREILG 494 + +LG Sbjct: 490 VLNLLG 495 >gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct] Length = 477 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 142/468 (30%), Positives = 242/468 (51%), Gaps = 29/468 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + D +H+ +FVA+ G DG+ +I +A+G ++V++ ++ +D + Sbjct: 17 IDDDDKHMLE--VFVALKGLSTDGNKYIDSVLAKGV-SLVLTDSHEFED-------QKRV 66 Query: 93 LVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + N ++ LS A Y + P+NI+ +TGT+GK+S++S++ Q S + +G Sbjct: 67 FYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNG 126 Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 I +++ TT + L K +SY + ++ +E SSH LDQ R++G+ F+ Sbjct: 127 NGIYPDLRESTHTTLDILSLYKTISYY--KNYQNLVMEVSSHSLDQKRVEGLDFDVAIFS 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LS 269 NL DH+DYH+T YF AK +LF+ + AII DD Y + + V L Sbjct: 185 NLSHDHLDYHKTMDNYFEAKAKLFQ--FKRLKKAIINIDDEYGQRLCNMTQVPVITVSLK 242 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN-ALVAAGLCIAIGI 327 Y +I K + I K + + G+ ++ L G+F + N L A L + Sbjct: 243 SEYADVYIKPKSIEGI--KTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVLDW 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 D L L +++ V GR E + ++ +I +DYAHT ++LE L+ + + + + Sbjct: 301 DCILDLGNIKP---VKGRMEVIELDN-DIKIVIDYAHTPDALEKALQTLNSYNPNNLWCI 356 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444 FGCGG+RD KRPIM +IA + A ++T+DN R E E I ++I G I + Sbjct: 357 FGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITS 416 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 R +AIR +IE N+ D++++A KGHE ++ NG K+ + +II+ + Sbjct: 417 REQAIRFSIENANQGDIILLASKGHE-CYLDKNGAKEYFDEREIIKNM 463 >gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 491 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 27/464 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-SATIR 87 +I ++ DS+ +F A++G DGH +I A + GA V+S LQ+ + I Sbjct: 22 EIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVEII 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 N+ ++V++TR L+ ++ +G HP I+ +TGT GK++V+ +++ + S +S Sbjct: 82 QNSTFILVEDTRVALATMSAEFFG-HPSKELTIVGITGTKGKTTVSGYIKSVLDNSDISC 140 Query: 145 FQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG + F N TTP + K + + GV +++E SS G+ +R+ G Sbjct: 141 GVIGTNGIYFANQYFKTVN--TTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHG 198 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I+ FTNL DHI H T + Y K LF +II DD SK ++++ Sbjct: 199 IEFDYAIFTNLSHDHIGEKEHPTFEHYRECKSMLF----AMSKYSIINIDDENSKVMIEK 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + + S+ F K + N + E + ++ G+F VYNAL Sbjct: 255 SKDY--KTYSIDSSSDF-QAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTI 311 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 LC +G+ + LEK HV GR + + + ++ +DYAH SLE +L+ ++ + Sbjct: 312 MLCEQLGLSYQSIYTGLEKAHV-KGRLQVIDGFT-DIKVIIDYAHNEVSLENVLQTVKEL 369 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 R+IV+FG G R Q +R + +A D+ IVT DNP +E+P+KI EI+ I Sbjct: 370 KPKRLIVLFGSVGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIIDEIVSHISQD 429 Query: 440 IEK-----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 +K +R AI+ AIEM K DV+V+AGKGHE ++ NG Sbjct: 430 KKKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKGHEEYQLI-NG 472 >gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. ANA-3] Length = 493 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 155/492 (31%), Positives = 233/492 (47%), Gaps = 46/492 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ E++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPYA-----------GEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR--LYGKHPENI 117 +A+AQGA A++V + Q I R+ ++ A R + I Sbjct: 51 DKALAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYL 170 + +TGT+GK+S + Q+C + L + G + + + D+ TT I L Sbjct: 111 VGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITL 164 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y AK Sbjct: 165 MRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAK 224 Query: 231 MRLF--EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LF + LL ++ DD + N ++ + H + N Sbjct: 225 QMLFRFDSLLH----GLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEVAFYTKNA 277 Query: 289 Q------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 Q Q T+ + D PL G F + N L A G+D + + L V Sbjct: 278 QFNDQGVQATLVWPEGEVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPV 337 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GR E T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+M Sbjct: 338 AGRMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLM 396 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459 G+ A AD +VT DN RSEDP +I +II G+ + + +R+ AI+ + Sbjct: 397 GQAAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPG 456 Query: 460 DVLVVAGKGHET 471 DV+++AGKGHET Sbjct: 457 DVILLAGKGHET 468 >gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia oklahomensis C6786] Length = 514 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 43/489 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG F+A + D FI A+A+GA A++ Y + F+A Sbjct: 30 QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVL----YQPEGFAADGLEPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ P Sbjct: 86 SLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIA-----AALTALHQ-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRL--AVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 RV ++ Y + + KV A ++ D D G F V Sbjct: 255 LAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNV 314 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370 N L G +A + L +E L V GR E +G + + VDYAHT ++LE Sbjct: 315 SNLLAVLGTLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALE 374 Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+K Sbjct: 375 KTLDALRPIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQK 434 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I G+ + +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 435 IIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493 Query: 485 DCDIIREIL 493 D D R L Sbjct: 494 DQDHARLAL 502 >gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 505 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 148/464 (31%), Positives = 227/464 (48%), Gaps = 29/464 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I + S S + G +F+ + G DGH ++ +AI +G A++ + Sbjct: 23 DTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEAIQRGCAALMAEKKVE------RL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + P +VV +TR+ +++ A YG HP N ++ VTGT+GK++ ++ I +G Sbjct: 77 EGSIPCIVVPDTRRAMAVLADAYYG-HPSNAMNLIGVTGTNGKTTTTHMIEHIFHHTGHK 135 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG S + S+ + TTP + L L ++ + + +E SSH L R+ G Sbjct: 136 TGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKYAVLEVSSHALRMGRVRGC 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEV 256 FTNL DH+DYH + Y K LF +L LPK AI+ ADD +SK Sbjct: 196 NFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYGSLPK--VAILNADDPFSK-- 251 Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K A +V+ G Q + ++ + + G F VYNA Sbjct: 252 -KLAAKTSAQVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGSTWIHLNVVGIFNVYNA 310 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + LE V GRF+ + T + ++ VDYAH + LE ++ Sbjct: 311 LAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIETG-QDFQVIVDYAHNPDGLEKVIST 369 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 R IT G+II + GC GDRD+ KRPIM A LAD AI+T DNPRSE E I +++ G Sbjct: 370 ARAITKGKIIALIGCEGDRDKAKRPIMAAKAAILADKAILTSDNPRSERSESILEDMVRG 429 Query: 436 I--PGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 + G +R +AI A+E+ D +++ GKGHET I Sbjct: 430 LDNAGLSRCETITSRKDAIHRALELAKTGDCVLILGKGHETQQI 473 >gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C101] gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus C160] gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 494 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYQVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 132] gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus COL] gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus A5948] gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A9765] gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754] gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus T0131] gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 493 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160] Length = 520 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 160/480 (33%), Positives = 225/480 (46%), Gaps = 37/480 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +D+R + AG F A D FI AI +GA A++V A++ P L Sbjct: 33 ADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVPAL- 91 Query: 95 VDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + AS Y + +L V TGT+GK+S + +V G +G T Sbjct: 92 ----NELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGTLGT 147 Query: 153 -ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + TTP L ++L+ L G V++E SSH L Q R++G FTN Sbjct: 148 GLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVFTN 207 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L +DH+DYH T AY AK RLF P+ A+I DDA + ++ H R ++ G Sbjct: 208 LTQDHLDYHGTFAAYETAKTRLFA--WPELRAAVINRDDAAGRRLLASTHGH-ARTIAYG 264 Query: 272 YQGKF--IHLK---KVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNAL 316 +G H K + A V + G F + G F V N L Sbjct: 265 IEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVSNLL 324 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374 G+ +A + L L KL V GR E +G + + +DYAHT ++LE L+ Sbjct: 325 AVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVIDYAHTPDALEKTLE 384 Query: 375 NIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +R I + R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P I + Sbjct: 385 ALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSENPLAIIEQ 444 Query: 432 IIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I+ G+ K RIE AI AI ++DV+V+AGKGHE + G+K+ D D Sbjct: 445 IVAGMQD-ASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 502 >gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas sp. JS666] Length = 501 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 146/472 (30%), Positives = 222/472 (47%), Gaps = 44/472 (9%) Query: 24 QW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +W RER + +DSR + G F+A G DG ++ A+A GA A +V LQ F Sbjct: 13 RWLRERVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVE----LQGF 68 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 + + + A+ + + + + AVTGT+GK+S ++ Q R Sbjct: 69 EPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRL 128 Query: 141 G-----LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + + IG + LTTP P+ L + + +G ++EASS GL Sbjct: 129 GRKCGVVGTLGIGAPGAVVFTG----LTTPDPVLLQQQMRRFVDEGFATCALEASSIGLV 184 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + RLD + FTN +DH+DYH + Q Y+ AK LF P A+I DD E Sbjct: 185 ERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFS--WPGLKAAVINVDDGKGLE 242 Query: 256 VMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL---------FP 305 + + V ++ G IH +K IH+ V G FD + Sbjct: 243 LSASLAGSDLDVWTLSCTGPARIHAQK---IHH------GVNGVSFDVVEGAEQHRVSSK 293 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G++ VYN L A+GI + L VPGR + + + +DYAHT Sbjct: 294 LVGQYNVYNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLP-LVVIDYAHT 352 Query: 366 SNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++LE +L ++ + G++ VFGCGGDRD GKRP+M +A AD +VT DNPRS Sbjct: 353 PDALEKVLTALQPVARSRGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRS 412 Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 E+P I +++ G+ + +R AI A+ + DV+++AGKGHE+ Sbjct: 413 ENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKGHES 464 >gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas sp. TJI-51] gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas sp. TJI-51] Length = 419 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 138/418 (33%), Positives = 209/418 (50%), Gaps = 20/418 (4%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 +F R+ I E++ DSR+++ G +F+A+ G K DG IA + AY Sbjct: 8 LFAHASRDPMIRELTLDSRNVRPGDLFLAVPGAKVDGR----GHIADALARGAAAVAYEE 63 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137 Q + ++ P++ V LS A R YG+ +++ VTGT+GK+SV + Q Sbjct: 64 QGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQAL 123 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G IG T Q RLTTP PI + L L G V++E SSH L+Q Sbjct: 124 ELLGKRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALEQ 183 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 R+ + TNL RDH+DYH + QAY AK +LF P ++ DD + + + Sbjct: 184 GRVAALAFDIAVMTNLSRDHLDYHGSMQAYEAAKAKLFA--WPSLRCQVVNLDDEFGRRL 241 Query: 257 MKR------AHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLP 307 + A R+LS + + L K H + ++ +G+ L Sbjct: 242 AQAFADRAPADPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERI-LRSQLL 300 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N L A +A+ +L + KL GR + +G ++ + VDYAHT + Sbjct: 301 GRFNLSNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQRLGGGAKP-LVVVDYAHTPD 359 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +LE +L+ +R G+++ +FGCGGDRD+GKRP+M ++A LAD +VTDDNPRSEDP Sbjct: 360 ALEKVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRSEDP 417 >gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus N315] gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH9] gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus JH1] gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9781] gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9763] gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus A9719] gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A9299] gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A8115] gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6300] gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A6224] gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus A5937] gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED98] gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus A10102] gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8117] gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus 04-02981] gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819] gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus A8796] gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 494 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium 8_1_57FAA] Length = 488 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 238/460 (51%), Gaps = 35/460 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ +++DSR +++G +FV I G DGH ++ +GA AI+ +D A Sbjct: 20 ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKGAAAIIAE-----RDIEAP- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145 ++ +NTR L+L ++ +G +P L V G +G + I RS L Sbjct: 74 -KGVTVIKAENTRYALALMSAAYFG-YPAEKLKVIGITGTKGKTTTTYLI--RSILEGVG 129 Query: 146 -QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI + D ++ TTP + + + + +G V +E SS GL HR Sbjct: 130 HKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVMEVSSQGLMLHRTA 189 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I G FTNLG+DHI + H+ + Y K LF++ I DD Y +++ + Sbjct: 190 EIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKAMLFQQC----KLGIANIDDPYYEDIFR 245 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEGK-DFDFLFPLPGEFQVYN 314 A C+V + G+ K + + V + + +S V GK DFD +PG+F VYN Sbjct: 246 ---GATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDVEIDIPGKFSVYN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A +C G+ S + E L+ HV GR E + S + +DYAH + SLE +L Sbjct: 303 SLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLT 360 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ R++ VFGCGG+R + +R MG+++ LAD+ I+T DNPR E+P++I +I Sbjct: 361 TLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTIITSDNPRFEEPQEIINDIKV 420 Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 421 GIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHE 460 >gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC 29176] Length = 496 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 147/460 (31%), Positives = 239/460 (51%), Gaps = 35/460 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ + +DSR ++ G +FV I G DGH + + +GA A+VV + Sbjct: 20 ETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKGAAAVVVEK-------DVEV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ ++ V++TR L+L ++ +G E I+ +TGT GK++ ++ I + +G Sbjct: 73 PADVTVIKVEDTRYALALMSAAYFGYPAEKLKIVGITGTKGKTTTTYMIKSILEETG--- 129 Query: 145 FQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++G TI + + ++ TTP + + + + +G V +E SS GL HR Sbjct: 130 HKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCVVMEVSSQGLMLHRTA 189 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 GI G FTNLGRDHI + H+ + Y K LF++ I DD Y ++V Sbjct: 190 GIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFKQC----RLGIANVDDKYFEDVFS 245 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-KDFDFLFPLPGEFQVYN 314 A C+V + G+ K + + V + + ++ V G DFD +PG F VYN Sbjct: 246 ---GATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMDFDVEIDIPGTFSVYN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A +C + + L+ + L+K V GR E V S + +DYAH + SLE +L Sbjct: 303 SLTAISVCRHFEVPAELIKDALKKAKV-KGRIEMVKV-SDDFTLMIDYAHNAMSLESLLT 360 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+P+ I +I Sbjct: 361 TLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITSDNPRFEEPQAIIDDIKT 420 Query: 435 GI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI ++E +R EAI+ AI DV+V+AGKGHE Sbjct: 421 GIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKGHE 460 >gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Blochmannia floridanus] gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Candidatus Blochmannia floridanus] Length = 499 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 158/453 (34%), Positives = 221/453 (48%), Gaps = 25/453 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PI 92 DSR+I G +F+AI G DG L I AI GA AI+ S F I +N PI Sbjct: 31 DSRNINFGNLFIAIQGYNTDGRLHIDDAINNGAVAILSESYNKSTFFIKKIVNNVEVIPI 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + + K +S A R Y HP ++ VTGT+GK+++ + G S +G Sbjct: 91 IYFNQLNKCISNIAGRFY-DHPSLCLKLIGVTGTNGKTTITHLLTNWTSLLGERSAVMGT 149 Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + S + TT S I K L GVT V++E SSHGLDQ+R+D + Sbjct: 150 LGNGVLSDINPSCCTTCSAIETQKILKQFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAI 209 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV- 267 F+N+ DH+DYH Y AK RLF EL K +I DD + NA Sbjct: 210 FSNISNDHLDYHNNINQYRMAKWRLFNELRVKN--YVINVDDCVGYRWLLSLSNAVAVTI 267 Query: 268 ---LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L + G++I L K ++ + V S G F L GE V N L+A G + Sbjct: 268 KNNLPRSWSGRWIALVKADYYLYGTKIVFKSSWGNGF-IHSQLLGEVNVSNILLALGALL 326 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382 +G +L KL+ V GR E + + I VDYAHT ++L+ IL + + + G Sbjct: 327 IMGYSLKSLLYTGSKLYPVCGRLEVLSCLNHPTVI-VDYAHTPDALKKILIFAKHLCNKG 385 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438 R+ +FGCGG+RD+ KR +MG IA +D I+T+DNPR EDP+ I +II I Sbjct: 386 RLWCIFGCGGNRDRSKRSLMGVIANRYSDYVIITNDNPRVEDPKLIIDDIICKIRNSEKL 445 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IE +R+ AI + D +++ GKGHE Sbjct: 446 KIIE--DRVYAINMVVSKACSDDFVLILGKGHE 476 >gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus MW2] gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus MW2] gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 494 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYSVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus RF122] gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus RF122] Length = 494 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Hylemonella gracilis ATCC 19624] Length = 554 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 163/513 (31%), Positives = 241/513 (46%), Gaps = 77/513 (15%) Query: 24 QW-RER---KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---- 75 QW RER E+S+DSR + AG F+A G DG F+P A+AQGA A +V + Sbjct: 16 QWLRERVGASGGELSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLA 75 Query: 76 ----AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 AY L D SA + + A+ YG+ + +LA+TGT+GK+S Sbjct: 76 AFADAYGL-DASARAERIAAYAGPEGLKAASGPIAANYYGQPSQALEVLAITGTNGKTST 134 Query: 130 ASFVQQICQR-------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 A ++ Q + + + +G + + LTTP P+ L ++L L+ QG Sbjct: 135 AWWLAQALSALRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGF 194 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++EASS G+ + RLDG + FTN +DH+DYH + AY+ AK LFE P+ Sbjct: 195 SACALEASSIGIVERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFE--WPQLP 252 Query: 243 PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH----------NKQQV 291 A++ DD E+ + A AG + + + + I + Sbjct: 253 AAVVNVDDPQGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQ 312 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-- 349 T S++ + G + V N L +G A + +LH VPGR EF Sbjct: 313 TTSLQARTL-------GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSG 365 Query: 350 GTNSRGGR-------------------------IYVDYAHTSNSLEMILKNIRTITS--- 381 G ++ GR VDYAHT ++L IL+ +R + + Sbjct: 366 GMSAAPGRPKQANIPSGGSEDTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRG 425 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437 GR+ VFGCGGDRD KRP+MG+ A AD ++T DNPRSE P+ I +I G+P Sbjct: 426 GRLWCVFGCGGDRDPVKRPLMGEAAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCD 485 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++E +R AI A+ DV++VAGKGHE Sbjct: 486 AWVEP-DRAVAIARALAAAQAPDVVLVAGKGHE 517 >gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus 58-424] Length = 494 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPFGTYQVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNELIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RS9916] gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. RS9916] Length = 511 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 230/483 (47%), Gaps = 40/483 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR G +F+ + G + DG F Q +A GA A V+ SA +L D + Sbjct: 25 ITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLADGAAAAVIGSAAALADPPSPADPV 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148 + A Y ++ VTGT+GK++ ++ IC + G S+ G Sbjct: 85 VVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGKTTTTHLIEHICDQIGRSAALFGT 144 Query: 149 -----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 P +I+S TT L L+ + G ++E SSH LDQ R+ G + Sbjct: 145 LVNRWPGHSITSTH-----TTAFADRLQAQLAEAVAGGTQVAAMEVSSHALDQGRVAGCQ 199 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKE---SPAIIYADDAYSKEVMKR 259 A FTNL +DH+DYH + QAYF AK RLF E LL E + A++ DD + + K Sbjct: 200 FSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEGARAVVNVDDPWGQ---KL 256 Query: 260 AHNAGCRVLSV---------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 A G R G + L A + + VT + G F PL G F Sbjct: 257 ADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAGRGA---FQSPLVGAF 313 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-----RIYVDYAHT 365 + N L A G+ + G+ ALVL+ VPGR E V S + VDYAHT Sbjct: 314 NLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMADLPSVLVDYAHT 373 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + L L R G ++ VFGCGGDRD+GKRP M +A +L+D +VT DNPR+EDP Sbjct: 374 PDGLRNALLASRPFVKGDLVCVFGCGGDRDRGKRPQMAAVAAELSDRVVVTSDNPRTEDP 433 Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 ++I +++ GIP + +R AI I D++++AGKGHE I+ G K+ Sbjct: 434 QQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLIAGKGHEDYQIL--GTTKI 491 Query: 483 SVD 485 D Sbjct: 492 HFD 494 >gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 509 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 228/479 (47%), Gaps = 62/479 (12%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS----AYSLQDFSATIR 87 E+SSDSR I AG +F A G+ DG FI AI +GA A+V + + DF Sbjct: 20 ELSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAADF----- 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+L V + A+ YG+ + +A+TGT+GK+S + ++ R Sbjct: 75 ---PLLAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSR------ 125 Query: 146 QIGPTSTISSFAQD-------NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 GP + I + +RL TTP I L + L L G + +++EASS G Sbjct: 126 LTGPCAVIGTLGTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIG 185 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 LDQ RL+G+ + FTN RDH+DYH Y AK LF++ P A++ DDA Sbjct: 186 LDQGRLNGLPVQVALFTNFTRDHLDYHGDMATYEAAKTALFDQ--PGLQHAVLNLDDAMG 243 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------- 305 ++ ++ GY + + + + S G F + Sbjct: 244 LRLLAHLQRTAPQLALTGYTLTDLQPAGITVLR-AGDIRSSHAGTSFQLMTAAGTMLVRT 302 Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYA 363 L G F V N L G+ +A +++ +E L VPGR +F G ++ + +DYA Sbjct: 303 RLVGSFNVSNVLGIIGVLLAQDCPLRAIVDAIETLTAVPGRMQQFGGQDAP--LVVIDYA 360 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++L+ L ++ + + G++ VFGCGGDRD GKRP MG AL AD I+T DNP Sbjct: 361 HTPDALDKTLAALQQVAAQRHGKLWCVFGCGGDRDPGKRPQMGLAAL-AADEIIITSDNP 419 Query: 421 RSEDPEKIRAEII---------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 RSE I A+ + H +P IE +R AI A+ DV+++AGKGHE Sbjct: 420 RSEVAAAIIAQTLQGTDERADSHAVPLVIE--DRAAAILWAVRHAANADVILLAGKGHE 476 >gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus D139] gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Staphylococcus aureus subsp. aureus H19] gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus aureus subsp. aureus ED133] gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 494 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidovorax citrulli AAC00-1] Length = 519 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 226/461 (49%), Gaps = 36/461 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G IF+A G DG + + +A+A+GA A +V + A + Sbjct: 35 LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVER----EGVEAFRFGAEGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ---QICQRSGLSSFQI 147 + + + L A+ +G + +++AVTGT+GK+S ++ + SGL++ Sbjct: 91 AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWIADALNLLAGSGLATH-- 148 Query: 148 GPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G I + Q LTTP P+ L +A + + G+ ++EASS GL +HRL Sbjct: 149 GGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLA 208 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++L FTN +DH+DYH AY+ AK LF+ P A++ DD E+ Sbjct: 209 GMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD--WPGLQAAVVNIDDPRGGELSDTL 266 Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + G + + V + T++ + + G + ++N L Sbjct: 267 AQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVV 326 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A+GI L +L VPGR E + + + VDYAHT ++LE L+ +R + Sbjct: 327 ASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQP-LVAVDYAHTPDALEQALQALRPV 385 Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+ VFGCGG+RD+ KRP+MG+IA AD IVT DNPR+E P I EI+ G Sbjct: 386 AEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADAVIVTSDNPRNEAPGAILHEILLG- 444 Query: 437 PGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKGHE 470 G ++A I AI + +DV+++AGKGHE Sbjct: 445 ---TVAGTTVQAEPERDAAIARAIADADGRDVVLIAGKGHE 482 >gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii 2AN] Length = 501 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 227/477 (47%), Gaps = 47/477 (9%) Query: 23 MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 +QW RER + +DSR + G F+A G DG + A+ +GA A +V ++ Sbjct: 12 VQWLRERVTGTLQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATACLVEQT-GVEA 70 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ 138 F T + + + A++ +G HP +LAVTGT+GK+S A ++ Sbjct: 71 FGFT---GEHMAALPGLKAATGPMAAQWFG-HPAQHLAVLAVTGTNGKTSTAWWLAGAL- 125 Query: 139 RSGLSSFQI-GPTST---------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + LS ++ PT + + +TTP P+ L +A + QG+ ++E Sbjct: 126 -NSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQGLGACAIE 184 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASS GL + RLDG + FTN +DH+DYH + Y+ AK LF+ P A+I Sbjct: 185 ASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFD--WPGLQAAVINV 242 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----- 303 DD ++ + S+ G A Q + + +G F + Sbjct: 243 DDPAGAQLHAELTGGALDLWSISAHG--------AARLAAQDIALGPQGLRFTVVEGAQR 294 Query: 304 FPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G + V N L + G+ A + L VPGR + + + + Sbjct: 295 VPLQTRVIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAPGQP-LVA 353 Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L+ L+ +R + G++ VFGCGGDRD GKRP+MG +A AD +VT Sbjct: 354 VDYAHTPDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQQHADWVVVT 413 Query: 417 DDNPRSEDPEKIRAEIIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPRSE+P I +I+ G I G + +R AI AI + DV+++AGKGHE Sbjct: 414 SDNPRSEEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAGKGHE 470 >gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Burkholderia rhizoxinica HKI 454] gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454] Length = 510 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 156/498 (31%), Positives = 237/498 (47%), Gaps = 35/498 (7%) Query: 12 PELINQLSIFPMQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 PE I ++ + W ++ ++ DSR + AG FVA + D +I A+ +GA Sbjct: 8 PEQIERVRAEVLAWLRARLAPHAQLRVDSRAVCAGDAFVAYAVDSADSRAYIADALQRGA 67 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGK 126 A++V + P+L V + AS YG+ ++L V TGT+GK Sbjct: 68 AAVLVQAGGEFP-------GGGPVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTNGK 120 Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + +V SG IG T + TTP + +L+ L + G + V Sbjct: 121 TTTSHWVAGALSGSGTRCAIIGTLGTGLPGQLSPTGFTTPDAPQVHHSLAALRAHGASAV 180 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S+E SSH L Q R++G+ FTNL +DH+DYH+ +Y AK RLF+ P A+ Sbjct: 181 SMEVSSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFD--WPGLRAAV 238 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEG 297 I DD + ++ H A RV ++ Y +H + A T+ + Sbjct: 239 INRDDEAGRRLI--GHLA-TRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDW 295 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + G F V N L G+ +A + L + +L V GR + +G + Sbjct: 296 GHAELEVGTLGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDE 355 Query: 358 --IYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 + VDYAHT ++LE L +R I + G+++ VFGCGG+RD KRP+MG IA LAD Sbjct: 356 PLVVVDYAHTPDALEKTLDALRPIATQRGGKLVCVFGCGGERDATKRPLMGAIAERLADS 415 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 IVT DNPRSE P I +I+ + P + +R AI A+ + DV+++AGKGH Sbjct: 416 VIVTSDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKGH 475 Query: 470 ETVHIVTNGEKKMSVDCD 487 E V G+K+ D D Sbjct: 476 EATQEVM-GKKRPFSDQD 492 >gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila psittaci RD1] gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Chlamydophila psittaci Cal10] gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila psittaci 6BC] Length = 483 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 155/512 (30%), Positives = 252/512 (49%), Gaps = 52/512 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++S ++ ++ DSR++ G IF+A G DG+ F Sbjct: 1 MNLKELLHNTKAKIYGKIS-------SVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 AI GA A+ S I S+ P L D A++ YG HP + Sbjct: 54 HLAIENGAIAVASSIYNPFLPVVQIISSDLPQLEAD--------LAAKYYG-HPSQKLCV 104 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK++V+ ++ + + IG I +S QD TTP L K L+ Sbjct: 105 VGITGTNGKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDG-YTTPESCLLQKYLA 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + ++ +E SS GL +RL + G TN+ DH+D+H + + Y AK++LF Sbjct: 164 EMVKSNLSAAVMEVSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLF- 222 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +LP A++ D Y+ + ++ + ++ G + A + + S Sbjct: 223 SMLPSSGLAVVNNDLHYAAQFIEATQ---AQPITYGIEQH--------ADYRASNLRFSP 271 Query: 296 EGKDFDFLF---------PLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGR 345 G DFD L+ PL G+ +YN L A + +G D ++ + + GR Sbjct: 272 FGTDFDLLYKGETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403 E V + IY+DYAHT ++L+ + K ++ + GR+IVVFGCGGDRDQ KR IM Sbjct: 332 LEPVFSGP--CPIYIDYAHTPDALDNVCKTLQALLPQDGRLIVVFGCGGDRDQSKRKIMA 389 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDV 461 ++ ++ A+VT DNPR EDPE I EI G F + +R +AI A+ + + +D+ Sbjct: 390 QV-VEKYGFAVVTTDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDI 448 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++VAGKGHET I + D +I+ E+L Sbjct: 449 VLVAGKGHETYQIFKHQTIAFD-DKEIVLEVL 479 >gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rubrivivax benzoatilyticus JA2] Length = 491 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 215/453 (47%), Gaps = 30/453 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSLQDFSATIRS 88 + +DSR +Q G F+A G DG F+ QA+ GA +V A+ +D Sbjct: 24 LRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDARVATLP 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LS 143 + + D + + RL ++A TGT+GK+S A + Q R G + Sbjct: 84 DLKAVTGDIAHAYFEHPSQRL------KLVATTGTNGKTSTAWWTAQALTRLGQRCGVMG 137 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + +G + + LTTP P+ L A QG ++EASS G+ +HRLD + Sbjct: 138 TLGVGEPGAVRATG----LTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAE 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 + FTN RDH+DYH T AY+ AK RLF P A+I DD + Sbjct: 194 IDVALFTNFTRDHLDYHGTMAAYWEAKRRLFA--WPGLKAAVINVDDEQGARLAAEPLAL 251 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +V + + + V + T+ + L GE+ V+N L G Sbjct: 252 DVWTYAVNGAARLV-ARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLR 310 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 A+G+ A + L VPGR + V + VDYAHT ++LE +L+ +R + + Sbjct: 311 ALGVALADAAAVVPALTPVPGRMQRVPGEHV--EVVVDYAHTPDALEKVLQALRPLAAAR 368 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 GR+ VFGCGG+RD KRP+MG IA LAD + T DNPR E P I ++I+ G+ G Sbjct: 369 GGRLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAGHD 428 Query: 441 EKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E +R EAI A+ DV+++AGKGHE Sbjct: 429 EVDVIEDRHEAIAYAVANAAPGDVVLLAGKGHE 461 >gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-7] Length = 493 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 151/490 (30%), Positives = 231/490 (47%), Gaps = 42/490 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ +++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPYA-----------GEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR--LYGKHPENI 117 +A+AQG A++V + + Q T I ++ ++ A R + I Sbjct: 51 DKALAQGVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYL 170 + +TGT+GK+S + Q+C + L + G + + + D+ TT I L Sbjct: 111 VGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITL 164 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y AK Sbjct: 165 MRQLHEFAGKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAK 224 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ- 289 LF ++ DD + N ++ + H + N Q Sbjct: 225 QMLFR--FDALRHGLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEAAFYTKNAQF 279 Query: 290 -----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 Q T+ + D PL G F + N L A G+D + + L V G Sbjct: 280 NDQGVQATLVWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAG 339 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG+ Sbjct: 340 RMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQ 398 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDV 461 A AD +VT DN RSEDP +I +II G+ + + +R+ AI+ + DV Sbjct: 399 AAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDV 458 Query: 462 LVVAGKGHET 471 +++AGKGHET Sbjct: 459 ILLAGKGHET 468 >gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And Adp Length = 535 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 229/461 (49%), Gaps = 28/461 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF A LF+ + + A++ DD + + RA Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRARTAVVCIDDDAGRAMAARA 293 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 294 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 349 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 350 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 407 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 408 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 466 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 467 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 507 >gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium ulcerans Agy99] gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase MurE [Mycobacterium ulcerans Agy99] Length = 559 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 223/467 (47%), Gaps = 42/467 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIR 87 I ++ ++ +Q G +F A+ G+ G AI +GA A++ A + SA + Sbjct: 82 ITGMTLRAQAVQPGDLFAALAGSATHGARHTADAIERGAVAVLTDPA-GVTAISALGCVP 140 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144 P+LV R L A+ +YG HP + L V G +G S + V+ + +G + Sbjct: 141 GTVPVLVHPAPRGVLGEAAALVYG-HPSDRLTVVGITGTSGKTTTTYLVEAGLRAAGRVA 199 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I + LTTP L L+ + +GV V +E SSH L R+DGI+ Sbjct: 200 GLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALTLGRVDGIR 259 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262 G FTNL RDH+D+H T YF AK LF+ +++ DD + + RA Sbjct: 260 FAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPASALRGHSVVVCIDDEAGRAMADRAGV 319 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----------PGEFQV 312 A ++V G+ H + + G++F L P PG + V Sbjct: 320 A----ITVSATGQPAHWRAT------DVAPVGAGGQEFTALDPAGVGHRVRIGSPGHYNV 369 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLE 370 N L+A + A+G+ L + V PGR E V RG VDYAH +L Sbjct: 370 SNCLLALAILDAVGVSPEQAAPGLRETRV-PGRLEQV---DRGQDFLALVDYAHKPGALR 425 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L +R R+ VVFG GGDRD GKR MG+IA +LAD+ +VTDDNPR EDP IR Sbjct: 426 EVLSTLRNPQR-RLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTDDNPRGEDPGAIRR 484 Query: 431 EIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I+ G +E +R EAI A++ DV+++AGKGHET Sbjct: 485 TIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 531 >gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8102] gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH 8102] Length = 500 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 160/483 (33%), Positives = 239/483 (49%), Gaps = 29/483 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + ++ ++SDSR + G +F+ + G + DG F QA+ GA A V+ + + + Sbjct: 16 LPAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQALEAGAAAAVIGPSAAQE 75 Query: 81 DFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135 A ++ P+LV+ R L AS Y HP +A+ G +G + + ++ Sbjct: 76 LPPA---ADQPVLVLREPVARSIGELAAS--YWGHPCRRMALIGVTGTNGKTTTTHLIEH 130 Query: 136 ICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + R G + G + ++ TT L L+ +S G ++E SSH L Sbjct: 131 LAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAASAGSQLAAMEVSSHAL 190 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAY 252 Q R+ G + FTNL +DH+DYH T ++Y+ AK RLF LL + P A++ DD + Sbjct: 191 VQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPLLDGDGPSAVVNGDDPW 250 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGE 309 + A G R L+ V Q V +S G F PL G Sbjct: 251 GSRL---AEQLGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPAGSGA-FCSPLLGR 306 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHT 365 F + N L A G+ + G+ A +LE + VPGR E V N + VDYAHT Sbjct: 307 FNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESAALPTVLVDYAHT 366 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + LE L R T GR++ VFGCGGDRD+GKRP M IA LAD +VT DNPR+EDP Sbjct: 367 PDGLENALAASRPFTDGRLVCVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDP 426 Query: 426 EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 ++I A+++ G+P + + +R AI AI + D++++AGKGHE I+ G +K+ Sbjct: 427 DQIIADVVAGMPSGTDLSVERDRATAIAEAIADASAADLVLIAGKGHEDYQIL--GTEKV 484 Query: 483 SVD 485 D Sbjct: 485 HFD 487 >gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella baltica OS195] gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS195] gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica OS678] Length = 499 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 227/467 (48%), Gaps = 33/467 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD----FS 83 + ++++ DSR I+ G +F+A+ G+K DG FI +A+ A A++V + + Q S Sbjct: 18 QSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDLSAAAVLVHTDDADQHGKVLHS 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQ 138 I V +R+ ++ A R H ++ +TGT+GK+S + + Q+ Sbjct: 78 DNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGVIGITGTNGKTSTSQLIAQLIT 137 Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +G + D+ TT I L + L +QG + ++E SSHGL Q Sbjct: 138 SLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHDFEAQGASVCAMEVSSHGLVQG 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+D + FTNL RDH+DYH ++Y AK LF ++ DDA + Sbjct: 198 RVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFR--FSTLGHGLLNLDDAVGASWL 255 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + ++ +G + A + K +G ++P GE Q+++ L+ Sbjct: 256 TELKSVPAQMWGFSIEGH-----QAAAFYTKN-AKFDDQGVSATLVWP-EGETQIHSPLL 308 Query: 318 AAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A + G D + E ++ L V GR E T + + VDYAHT + Sbjct: 309 GAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF-TTANNITLVVDYAHTPD 367 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++E L +R G + VFGCGGDRD+GKRP+MG+ A AD +VT DN RSEDP + Sbjct: 368 AIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQYADRIMVTSDNARSEDPAQ 427 Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I +II G+ + + +RI AI+ + + DV+++AGKGHET Sbjct: 428 IITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAGKGHET 474 >gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2 [Lysinibacillus fusiformis ZC1] Length = 488 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 236/465 (50%), Gaps = 34/465 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++++ DSR +Q +FV I G DGH + +A+ GA +V L + A + Sbjct: 22 QVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGATIVVTERELPLGETIAQV-- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC----QRSGL 142 +V +T + + L A++ + ++I + VTGT+GK+SV +Q I ++S L Sbjct: 80 -----IVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTGIIQNIMHGMGEKSAL 134 Query: 143 SS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S F + S+ + L+T I+ AK +G +++E SSHGL RL Sbjct: 135 SGTIGFNLNGILYESANTTSDALSTQQMIFRAKM------EGCRLMTMEVSSHGLALGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G+ FTNL DH+D+H T + Y +AK LF +L L K ++ ADDA+S+ Sbjct: 189 AGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLNADDAWSE-- 246 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314 + A V + G + + + + ++ + VE + + L GEF +YN Sbjct: 247 -RYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMNLLGEFNIYN 305 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G ++E +E+L V GR E V + +I++DYAHT +++E ++ Sbjct: 306 VLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKV-CSELPVQIFIDYAHTPDAIEKAIE 364 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + G++I + G GG+RD+ KRP M + A A+ I+T D+PR ED + I ++ Sbjct: 365 AAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKA-SAAEYVILTTDDPRYEDYDSITGDLAK 423 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ + G+R EA+R A+E+ D+++ AGKGHE I+ N Sbjct: 424 GMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKGHEDYQIIEN 468 >gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O11] gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus O46] Length = 494 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 236/472 (50%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S+ Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSE 246 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 + V S G + + K N Q+ S++G FDF+ P Sbjct: 247 YLTTVTP---YEVFSYGIDEEAQFMAK-----NIQE---SLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Finegoldia magna ATCC 53516] Length = 477 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 150/470 (31%), Positives = 228/470 (48%), Gaps = 24/470 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V++DSR I+ G +FVAI G + DGH FI +AI GA IV++ + D I+ Sbjct: 22 EITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDGINYIKV 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + + + + F S+ ++ VTGT+GK++ +S + I + IG Sbjct: 82 DDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTSSMISHILEHLNSPCTNIG 136 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T I+ + TTP + K L + + + VE SSHGL HRLDGI Sbjct: 137 TNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLDGIDFDVA 196 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 F NL +H+D+H+ + YF+AKM LFE K I DD Y ++ R + Sbjct: 197 VFNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED--TYT 250 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + F + V I K I K+ F+ F VYNA+ A +G Sbjct: 251 FSLENESDF-RAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIAAVNLLGY 305 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + + LE V RFEFV N RG I +D+AHT + E I K++ R I V Sbjct: 306 ELEDIAKALESFTGVEARFEFVN-NDRGINIVIDFAHTPKAFENIYKSVP--NDKRKIAV 362 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKG 443 +G GDR + R +GKI+ + ++VT D+P+ + E I +I+ GI F+ Sbjct: 363 YGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEANGEFVRIK 422 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AI+ AIEM +K D +++ GKG ET + EK + + + E+L Sbjct: 423 DRKSAIKHAIEMADKGDFVLLLGKGQETFIKLKGNEKTPYSEKETVNEVL 472 >gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 494 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 494 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 143/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFV---QQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ V Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T + Y +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase [Aromatoleum aromaticum EbN1] gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase [Aromatoleum aromaticum EbN1] Length = 502 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 229/457 (50%), Gaps = 29/457 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++DSR +Q G +F A G DG ++ AI +GA A++ + ++ + ++ P Sbjct: 23 ITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDSDGMRLEALSV----PA 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V R A ++G + VTGT+GK++V+ ++ GL IG Sbjct: 79 LPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIGTL 138 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 D+ TTP + + + L+ ++ ++E SS GLDQ R++G++ F Sbjct: 139 GCGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVAVF 198 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TNL RDH+DYH + ++Y AK RLF+ LP A+I DD + +R +G V Sbjct: 199 TNLTRDHLDYHSSMESYAVAKARLFD--LPGIGAAVINFDDDFGLAQARRLAASGMPV-- 254 Query: 270 VGYQGKFIHLK------KVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALV 317 +GY +F+ +V ++Q V + +G + F V N + Sbjct: 255 IGYT-RFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMA 313 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G + + ++ + +L GR + VG + +DYAH+ ++L +L+ +R Sbjct: 314 VIGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVGGVGEP-LVVIDYAHSPDALAQVLEAVR 372 Query: 378 TIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + GR++ VFGCGGDRD GKRP+MG +A LAD IVT DNPRSEDP KI I+ Sbjct: 373 STAQGRGGRLVCVFGCGGDRDAGKRPMMGDVARALADRVIVTSDNPRSEDPLKIIDAIVR 432 Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G E+ +R +AIR A+ DV+V+AGKGHE Sbjct: 433 GAGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKGHE 469 >gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces odontolyticus F0309] Length = 526 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 146/464 (31%), Positives = 226/464 (48%), Gaps = 43/464 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VSSD ++ W+FVAI G K+ G F AI GA ++ Q F + P+ Sbjct: 50 VSSDD--CESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GVPV 105 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ-QICQR------SGLS 143 + V + R + + +Y + +AVTGT+GK++ + ++ I R G Sbjct: 106 IQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCGTV 165 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +GP S + R T +P+ +LA Y GV +E S+H L HR+D Sbjct: 166 ETHVGPISF-----EAVRTTAEAPVVARFLAATEQYECGAGV----IELSAHALSLHRVD 216 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKR 259 GI +FTNL DH+DY+ + YF AK LF P+ S ++ DD + + + ++ Sbjct: 217 GIVFDVAAFTNLQHDHLDYYGDMENYFQAKALLF---TPEHSRHGVVCVDDEWGRRLAQQ 273 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNAL 316 A V ++ + ++ V + ++ G P+ GE + N Sbjct: 274 ATVPVTTVSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTA 333 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILK 374 VA +++GID A V+ +E +PGR E V GG+ + VDYAHT +LE L+ Sbjct: 334 VAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTP-GGQPLVIVDYAHTPEALEWTLR 392 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + R +TSGR++VVFG GDRD KR + +IA AD+ VTD+NPR+E P++IR ++ Sbjct: 393 STRELTSGRVVVVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRDYLLR 452 Query: 435 GI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI PG + R +A+R AI D +++ GKG E Sbjct: 453 GIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAE 496 >gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 156/502 (31%), Positives = 243/502 (48%), Gaps = 47/502 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L D++ + I ++ P + + V DSR + G IFVA G + G FI Sbjct: 18 LRLGDVLRE-----IPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFI 72 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NI 117 P+A+A+GA A++V+ S D R P + L+ A+ +YG HP + Sbjct: 73 PEAVARGARAVIVARG-SAADTLGAARVEVP-----DVPLALAQAAAVVYG-HPTFTLEV 125 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKA 173 + +TGT+GK++ A VQ R G Q G T+ D + T+P LA+ Sbjct: 126 VGITGTNGKTTTAHLVQACIDRCG---GQAGIVGTLGYRFGDLDVHASHTSPEADELARV 182 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + + ++G TH+ +E SS L R+D ++ FTNL +DH+DYH T +AY AK RL Sbjct: 183 AAAMVARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARL 242 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQ 290 F +L P A+I DD + +++++ G + ++ + A + Sbjct: 243 FVDLGP--GAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVE 300 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAA----------GLCIAIGIDSALVLEHLEKLH 340 + S G P GE + + L+ A + +G D L Sbjct: 301 LAHSASGTFIRARTPA-GEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPI 359 Query: 341 VVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 V GR E ++ G + VDYAHT ++L +L ++R + GR++ VFGCGGDRD Sbjct: 360 QVAGRLERC--DAPGADDVIVLVDYAHTPDALARVLASVRALGGGRVLCVFGCGGDRDPL 417 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI 453 KRP MG+ +AD+AIVT+DNPRSEDP I I+ G+ + + +R AI A+ Sbjct: 418 KRPQMGEAVGRVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAV 477 Query: 454 EMLNKQDVLVVAGKGHETVHIV 475 DV+++AGKGHE I+ Sbjct: 478 LDAEPGDVVLIAGKGHEPYQII 499 >gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei NCTC 13177] Length = 514 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 237/492 (48%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I SG +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARSGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus neapolitanus c2] Length = 519 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 146/482 (30%), Positives = 235/482 (48%), Gaps = 37/482 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR + G +F A G + + FI QA+A GA +V + Y+ + + Sbjct: 34 ITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAVLVVTEADYA----------DPRV 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGP 149 + V+ + + + ++ I+ +TGT+GK+SVA F+ RSG + IG Sbjct: 84 IRVEAVHSLVLQMVGHVCAVNFDDLTIIGITGTNGKTSVAQFIAGALSRSGAPHTASIGM 143 Query: 150 TSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 T+ + + L TTP + + QG +V +E SSH L+Q+RL G Sbjct: 144 IGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQGARYVVMEVSSHALEQNRLQG 203 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-A 260 + + FTNL RDH+DYH T YF AK +LF P II D+A + + + Sbjct: 204 LPIRLAVFTNLSRDHLDYHGTMAEYFAAKTKLFA--WPGLRAGIINFDEAQADVLFEALG 261 Query: 261 HNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A C +G + + + + A+ N + + + L G F N Sbjct: 262 ATADCWAYGLGDPDWRVADCQHVRVTSITALPNGIDIQVRTPLGEARLQPSLVGLFNGAN 321 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 + A +A+G+ ++ L++ PGR + + T G R VDYAHT ++L+ +L+ Sbjct: 322 IMAALAAVLALGMPLETAIKALDQSTPPPGRMQMI-TLPSGARALVDYAHTPDALDQVLR 380 Query: 375 NIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 +R +G+II VFGCGGDRD+GKRP+M A LAD ++T DNPRSE P+ I A++ Sbjct: 381 ALRDHRDAAGKIICVFGCGGDRDRGKRPLMAATAERLADQIVMTADNPRSEAPQAIIADM 440 Query: 433 IHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 G+ +R AI +A+ D +++AGKGHET + G++ D ++ Sbjct: 441 RGGLASPDTASVELDRRAAIESALMQAKAGDWVLIAGKGHETTQEI-QGQRLPFDDAAVV 499 Query: 490 RE 491 R+ Sbjct: 500 RD 501 >gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Staphylococcus aureus A9635] Length = 494 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + + G ++++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter sp. FB24] gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter sp. FB24] Length = 550 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 162/487 (33%), Positives = 237/487 (48%), Gaps = 51/487 (10%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYS 78 + P + +S +SR +Q G ++VA+ G G F+ QA+A GA A+V Sbjct: 42 VVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAVAVVTDDDGAR 101 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFV 133 L SA + P+LVVD R + A+ +Y PE ++ VTGT+GK++ F+ Sbjct: 102 LLALSAD--TPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNGKTTTTYFI 159 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + Q G + IG ++ A + LTTP L L+ + +G+ S+E SSH Sbjct: 160 NALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDAASMEVSSH 219 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + HR+DG++ FTNL +DH+D H T YF K RLF K A+I DD + Sbjct: 220 AVSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTPRHAKS--AVITVDDEW 277 Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-------------EGK 298 + + A AG V ++ QG A VT + +G Sbjct: 278 GRRL---ASAAGIPVTTLATAQG-----NDPAAPAADWTVTAAAPRGLGTEFRLRHRDGS 329 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSR 354 + LPG F V NA +A + +A G++ A + L++ VPGR + V T Sbjct: 330 ELRVHTGLPGSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTAPA 389 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 VD+AH ++L+ L+ +R+ G R+IVVFG G RDQGKRP MG IA LAD+ Sbjct: 390 A---VVDFAHNPDALQRALEAVRSTEPGSRVIVVFGATGQRDQGKRPAMGAIAARLADVV 446 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLV 463 I++DD+P ED IRA+++ G E G R AIR A+ M QD ++ Sbjct: 447 IISDDDPHDEDAAAIRADVLAGAREAKESGGLGCTILESYPRDVAIREAVNMAQPQDTIL 506 Query: 464 VAGKGHE 470 VAG+GHE Sbjct: 507 VAGRGHE 513 >gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 508 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 232/472 (49%), Gaps = 37/472 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIR 87 + +S+D+R ++ G IFVA+ G DG FIP AI +GA+A+VV +Y LQ Sbjct: 29 VTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGAKAVVVEGSYQPDLQ------- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+++VDN R S A+ + +P + L V G +G + + I + Sbjct: 82 --VPVIIVDNARLAFSRLAAEFW-DNPSHKLKVIGVTGTNGKTTTTYMISSMLESADAST 138 Query: 148 GPTSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G +T+ + + TTP P L + L + GV + +E+SSHGL HRL+ Sbjct: 139 GFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAVIESSSHGLKLHRLED 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKE---SPAIIYADDAYSKEV 256 + FTN+ +H++ H T + Y K RLF+ L P + +I DD ++ Sbjct: 199 VAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCGKWGVINLDDPNAQLY 258 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYN 314 + +V + Q + L +++ VT V +G + P+ G++ VYN Sbjct: 259 IDSTKG---KVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEINLPISGDYNVYN 315 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A G+ I I + LE+ VPGR + + + + + +DYAHT +SLE +L Sbjct: 316 ALAAIGVAITQNIPIDVCKSALERFTGVPGRMQVI-SMGQPFTVVIDYAHTEDSLEKVLI 374 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ T GR+ VFG G+RD KR MGK+A AD I+T+++PR ED +I +I Sbjct: 375 TLKQRTRGRLFAVFGSAGERDPYKRAPMGKVAAKYADFMILTNEDPRGEDEMQILLDIAE 434 Query: 435 G------IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 G I G +I +R AI A+ + D +++AGKGHET NG Sbjct: 435 GARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLLAGKGHETTIETKNG 486 >gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Colwellia psychrerythraea 34H] Length = 530 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 242/474 (51%), Gaps = 35/474 (7%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-RSNT 90 ++ +DSR I G IF AI+G+ +DG +I QAI QGA+ +V + T S+ Sbjct: 32 DLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFASSDN 91 Query: 91 PILVVDNTRKFLSLFA-SRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +V + LF ++ Y + P++ ++ +TGT+GK++ + + Q+ LS++Q Sbjct: 92 TVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQM-----LSAYQ 146 Query: 147 --IGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T + + DN TTP L + S + ++V++E SSH L Q+R+ Sbjct: 147 KTCAVIGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQ 206 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 FTNL RDH+DYH + +Y +K ++F A++ DD +K+ ++ Sbjct: 207 ADLFDIAIFTNLSRDHLDYHGSMASYGESKKQIFSA--DSNQVAVVNFDDQQAKKWLENW 264 Query: 261 HNAGCRVL------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQV 312 L + Y+ F+ K + H++ V+ ++ D D PL G+F + Sbjct: 265 PKQQTLWLYSRETDNSNYK-NFVTAKGIN--HHRHGVSFTLMSHLGDIDITSPLLGDFNI 321 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A + + GI + + + ++ + GR E + + VDYAHT ++LE Sbjct: 322 DNLLAAISVLLIQGIPLSEIPHLVTQVSAIAGRMEATSAKNLATAV-VDYAHTPDALEKA 380 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ R +G + VVFGCGGDRD+GKRP+M + A AD +VT+DNPRSED + I +I Sbjct: 381 LQACRQHCAGELYVVFGCGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDI 440 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEKK 481 + G P + +E + ++ LNK D++++AGKGHE IV ++K Sbjct: 441 VAGFTCPDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVIVAKHDEK 494 >gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE] Length = 573 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 149/478 (31%), Positives = 239/478 (50%), Gaps = 37/478 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +L P + + + ++ DSR ++ G ++ A+ G + G F QA + GA A++ Sbjct: 68 ELAARLGAAPQESGD--VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVAVL 125 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + + + + P+LV ++ R + A+ +YG+ ++L +TGTSGK++ A Sbjct: 126 TDPAGAERAAA----TGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTA 181 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ + +G S+ IG T+ D+R+ TTP L + + +GV V+ Sbjct: 182 YLVEGGLRGAGRSTGLIG---TVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVA 238 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245 +E SSH L R+DG F NL +H+++H + YF AK +LF P+ S + Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPRRSRLGV 295 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD Y + ++ A + G+ V + + + +G+ Sbjct: 296 VNFDDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARA 355 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361 PLPG F V N L A G+D + + + VPGR E V G+ Y VD Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVD 411 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPR Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDVTKRGPMGAAAARLADTAVLTSDNPR 471 Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 SEDP I A ++ G +P E+G+ + AI A+ D ++VAGKGHE Sbjct: 472 SEDPLAILAAMLSGAAEVP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 528 >gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella paurometabola DSM 20162] gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella paurometabola DSM 20162] Length = 522 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 140/404 (34%), Positives = 208/404 (51%), Gaps = 30/404 (7%) Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 + P+L+ D+ R L A+ +YG P + + G +G S + V+ + ++ Sbjct: 98 DVPVLLHDDPRSVLGPAAAVIYGA-PSTKMTLVGITGTSGKTTTSFLVEAALGATQATTG 156 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T I+ LTTP L + + QGVT +E SSH L Q+R+ G + Sbjct: 157 LIGTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVTSAVMEVSSHALAQNRVGGTRF 216 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-------PAIIYADDAYSKEVM 257 G+FTNL +DH+DYH T + YF AK LF +P ES A+I DD + + Sbjct: 217 AVGAFTNLSQDHLDYHPTMEDYFAAKALLF---VPDESGDGPVCEQAVICVDDEWGNRMA 273 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314 +AG +++V G + H Q+ T++ G + F LPG + V N Sbjct: 274 DLRRDAGLPLVTVATTGPADWTAGAVSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVAN 333 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMI 372 A +A + G+ A + + + VPGR + + RG VDYAH +L+ + Sbjct: 334 AALALVVAHEAGVPLADAVRGIGAV-AVPGRVQRI---DRGQDFLAVVDYAHKPAALDAV 389 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + +R T+GRI VV G GGDRD+GKRP+MG++A A++ IVTDDNPR+EDP IRA + Sbjct: 390 IATLRGQTAGRIAVVVGAGGDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAV 449 Query: 433 IHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G +PG E G+R AI A++ DV+++AGKGHE Sbjct: 450 RAGAEAVPGGGEVREIGDRRAAITEAVDWARTGDVVLIAGKGHE 493 >gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2tet1] gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 434/Bu] gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 483 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 249/467 (53%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G IF+A G +G+ + QA+A GA A V+SS Y+ F + ++ Sbjct: 23 VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ ++ + A+R Y + +++ +TGT+GK++V+ V+++ +RSG+ + I Sbjct: 78 ---IIAEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTTVSCLVRELMERSGIRTGLI 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI +NR+ TTP I L K + + Q ++ +E SS G+ R+ + Sbjct: 135 G---TIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK + F LP++ A++ D Y+ + Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314 G + +V Y IH + A + ++ + G +D +FP L GE VYN Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGKVFPCETSLIGEHNVYN 299 Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 L A L + +G D A ++ + L GR + + +Y+DYAHT ++L+ Sbjct: 300 VL--ASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPF--PVYIDYAHTPDALDN 355 Query: 372 ILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + + GR+I+VFGCGGDRD+ KRP+M K++ + + VT DNPR+EDP++I Sbjct: 356 VCRILLQLLPKYGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414 Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 A+I G ++ + +R AI AI M + +D+++VAGKGHE I Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461 >gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus lugdunensis M23590] Length = 494 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 231/469 (49%), Gaps = 43/469 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + ++++DSR ++G IFVA G D H F I QG + IVV S + Sbjct: 20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKS-------KQEV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + ++V T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 73 EGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINEQKTKGAN------TTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DDA+S+ Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSE 246 Query: 255 EVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308 + A + + G Q K IH+ + Q VT ++ +++ P G Sbjct: 247 YL---ASVTPYEIFTYGIDNDAQFKAIHINESL-----QGVTFELDTPFGNYNVQSPYVG 298 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F + N + A + GI ++E ++ L V GR E + N I +DYAHT++ Sbjct: 299 KFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLI-IDYAHTADG 357 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + ++ ++ ++I + G G+RD K P MG +A AD I T DNP ++DP+ + Sbjct: 358 MNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVAC-RADYVIFTPDNPANDDPKML 416 Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E+ G ++E +R E IR AIE+ +D +V+A KG E I+ Sbjct: 417 TSELAKGATHDNYVEFEDRAEGIRHAIEVAEPEDTVVLASKGREPYQIM 465 >gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50] Length = 499 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 154/481 (32%), Positives = 244/481 (50%), Gaps = 36/481 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I E+ +DSR + +F IVG DGH ++ I +GA +VV +D Sbjct: 22 EIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKGAVCLVVQ-----KDVEPV--P 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 I+ VD+TR + + +S YG +P + L V G +G + ++++ +G + Sbjct: 75 GVLIVKVDSTRYAMGIVSSNFYG-NPSSKLTVIGITGTKGKTTTTYMIREMLMSAGHKTG 133 Query: 146 QIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG I A +N TTP + + K L + G+ V +E SS GL R+ G+ Sbjct: 134 LIGTIEIIDGNNVTAANN--TTPESMIVHKKLKDMVDNGLDSVVMEVSSQGLMLDRVAGV 191 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G F+NL RDHI + H+T + Y K +LF I ADD + V Sbjct: 192 DFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKLFTMC----KIGIFNADDPH---VDTMT 244 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGK-DFDFLFPLPGEFQVYNAL 316 +A C++++ G G + + ++NK + + GK D D L LPG F +YN+L Sbjct: 245 EHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSGKLDGDVLVNLPGNFSIYNSL 304 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G+ + E L+ + V GR E + + + I +DYAH + SL IL+ + Sbjct: 305 AAIAVADLMGVPFDKIQEILKTIKV-KGRVELIPISDKF-TIMIDYAHNAVSLMSILETL 362 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R R++ +FGCGG+R + +R MG+++ ++AD+ I+T DNPR E+P+ I +I GI Sbjct: 363 REYKPKRLVSLFGCGGNRSKERRYEMGEVSGNMADLTIITSDNPRFEEPQDIINDIKTGI 422 Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++E +R EAIR AI DV+V+AGKGHE + G K + D+IRE+ Sbjct: 423 NKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKGHEDYQEI-KGVKHHMDERDLIREV 481 Query: 493 L 493 L Sbjct: 482 L 482 >gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens] Length = 539 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 151/517 (29%), Positives = 250/517 (48%), Gaps = 49/517 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + +I + DSR + G +FV + G K DG+ F QAI +GA Sbjct: 12 ELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEFAHQAIEKGAV 71 Query: 70 AIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV---TGTSG 125 AIV SS + A++ VV++T LS A YG HP LAV TGT+G Sbjct: 72 AIVSSSEVLPAEGLEASV-------VVEDTNILLSGLAGAFYG-HPSKNLAVVGITGTNG 123 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQ 180 K++ + ++ I + GL Q G TI+ + + TTP ++L K ++ + Sbjct: 124 KATTSYLIRSIYEAMGL---QAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVHH 180 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239 G +E SSH + R + FTNL D D+H+++ Y A +LF +++ P Sbjct: 181 GTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKMVNP 240 Query: 240 KESPAIIYADDAYSKE-VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ I+ DD S V + + ++G + ++ +V + ++ + Sbjct: 241 EKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVRTPRG 300 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + + L G VYN L A + IA+ ++ +E++ VPGR E + + + Sbjct: 301 NLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI-DEEQAFAV 359 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VD+A+T + L +L +R RII V G GDRD+ KRP+M KIA D +D+ I T D Sbjct: 360 IVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCIFTSD 419 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---------------GNRIE-------AIRTAIEML 456 NPRSEDP + +++ G+ +E+ G+R+ A+R + M Sbjct: 420 NPRSEDPLDVIDDMLAGVGWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAGVAMG 479 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D +V+AGKGH T I+ + ++ D + RE L Sbjct: 480 EEGDAVVIAGKGHNTYEIIGDNKEYFD-DREECREAL 515 >gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei MSHR346] gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei MSHR346] Length = 514 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Kocuria rhizophila DC2201] gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Kocuria rhizophila DC2201] Length = 546 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 241/485 (49%), Gaps = 63/485 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSNTPILV 94 +SR +Q G ++ A+ G + G F A A GA A++ A L D + + P+LV Sbjct: 52 NSREVQPGDLYAALPGAQVHGARFAADAAAAGAVAVLTDPAGERLLDEAGV---SLPVLV 108 Query: 95 VDNTRKFLSLFASRLYGKHP-----ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + R ++ A+ +Y HP + + AVTGT+GK++ F I + G ++ IG Sbjct: 109 SEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGTNGKTTTTYFTTAILRALGHTTGLIG- 167 Query: 150 TSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 TI A D +RLTTP ++ L+ + +G+T ++E SSH L+ HR+DG+ Sbjct: 168 --TIEILAGDTPIPSRLTTPEAPHVHSLLALMRERGITATAMEVSSHALEFHRVDGVHYG 225 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--A 263 FTNL +DH+D H + + YF AK +LF + ++ +D +S + +RA Sbjct: 226 VAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSRAVVVLSDEDPWSGAMARRAREELG 285 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---------------EGKDFDFLFPLPG 308 V +V +G + + Q T+ +G++ LPG Sbjct: 286 DANVTTVALRGS----EDAERGQDAAQWTLRSLTRRGIGSAFVLRHRDGRELRVHTGLPG 341 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEK--------LHVVPGRFEFVGTNSRGGRIYV 360 +F V N A L + + +DS + LE L++ VPGR E VGT V Sbjct: 342 DFNVAN----AALAVLMVLDSGVELETLQRALDEHDPLTASVPGRMELVGTRPTS---LV 394 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AH ++L L+++ GR+IVVFG G RD GKRP+MG++A + AD+ IVTDD+P Sbjct: 395 DFAHNPDALVRALRSVDP-EDGRVIVVFGATGQRDTGKRPVMGRVAAEEADVVIVTDDDP 453 Query: 421 RSEDPEKIRAEIIHGIPGFIEK----------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +EDP IR ++ G + R AIRTA+ M +D ++VAG+GHE Sbjct: 454 HAEDPAPIREQVAAGAREAVAAGARATDVLVIAPRATAIRTAVRMARAEDSVIVAGRGHE 513 Query: 471 TVHIV 475 TV V Sbjct: 514 TVQDV 518 >gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia oklahomensis EO147] Length = 514 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 156/489 (31%), Positives = 232/489 (47%), Gaps = 43/489 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG F+A + D FI A+A+GA A++ Y + +A Sbjct: 30 QLHADTRSLQAGDAFIAYAVDGADNRPFIADALARGAAAVL----YQPEGSAADGLEPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ P Sbjct: 86 SLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIA-----AALTALHQ-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRL--AVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 RV ++ Y + + KV A ++ D D G F V Sbjct: 255 LAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNV 314 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370 N L G +A + L +EKL V GR E +G + + VDYAHT ++LE Sbjct: 315 SNLLAVLGTLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALE 374 Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+K Sbjct: 375 KTLDALRPIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQK 434 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I G+ + +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 435 IIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493 Query: 485 DCDIIREIL 493 D D R L Sbjct: 494 DQDHARLAL 502 >gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. W3-18-1] gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella putrefaciens CN-32] Length = 500 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 34/469 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ NE++ DSR I+ G +F+A+ G + DG FI +A+ GA ++V + + Q + Sbjct: 17 DQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDLGAAGVLVHTDDADQHGKVLL 76 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKH-----PE-NILAVTGTSGKSSVASFVQQI 136 N I R+ ++ A R H P I+ +TGT+GK+S + + Q+ Sbjct: 77 GDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLGIIGITGTNGKTSTSQLIAQL 136 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +G + D+ TT I L + L +QG + ++E SSHGL Sbjct: 137 VTSLRRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFEAQGASVCAMEVSSHGLV 196 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R+D + FTNL RDH+DYH ++Y AK LF ++ DD Sbjct: 197 QGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR--FSTLGHGLLNLDDPVGAS 254 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + ++ +G + A + K +G ++P GE Q+++ Sbjct: 255 WLIELKDMAAQIWGFSIEGH-----QAAAFYTKN-TQFDDQGVSTTLVWP-EGETQIHSP 307 Query: 316 LVAAGLCIAI----------GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L+ A + G D + E ++ L V GR E T + + VDYAHT Sbjct: 308 LLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERF-TTADNITLVVDYAHT 366 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E L +R +G + VFGCGGDRD+GKRP+MG+ A AD +VT DN RSEDP Sbjct: 367 PDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQYADRIMVTSDNARSEDP 426 Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +I ++II G+ + + +RI AI+ + + D++++AGKGHET Sbjct: 427 AQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLAGKGHET 475 >gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 668] gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 668] Length = 514 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPADGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTPAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei DM98] gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 112] Length = 514 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius DSM 20547] Length = 528 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 156/496 (31%), Positives = 241/496 (48%), Gaps = 46/496 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATIR- 87 I V+ DSR ++ G FVA+ G K DG F A+A GA +V + + D A + Sbjct: 48 IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107 Query: 88 ------SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 P++VV N R+ L L A+ + G + + +TGT+GK++ S+V Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTT-SYVLYNLLA 166 Query: 140 SGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 L ++G ++T I + TTP + + L + G + +E SSHGL+ Sbjct: 167 GILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLE 226 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 HR+ G++ + FTNL RDH+D H + YF K +LFE E P + DD Y + Sbjct: 227 LHRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFER---TEGPRLANVDDDYGRR 283 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV--- 312 + + + L+ GY + +++EG F P GE ++ Sbjct: 284 LAREFPGS----LTFGYSPE-------ADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPP 332 Query: 313 ----YNAL-VAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAH 364 YNAL VA + +A+ G D V++ ++ L VPGRF+ + + G + VDYAH Sbjct: 333 LVGDYNALNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAH 392 Query: 365 TSNSLEMIL---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 T LEM+L + I + GR+I V+G G+RD KRP+MG++ +AD+ I+T D+P Sbjct: 393 TEVGLEMVLTVARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPY 452 Query: 422 SEDPEKIRAEIIHGI-PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 EDP I E++ G P +R EA+ A+ M + D+L+ GKG E + G+ Sbjct: 453 GEDPVTIADEVMAGADPADTHIVVDRREALLEAVAMARENDLLIACGKGDEPFQHLPEGD 512 Query: 480 KKMSVDCDIIREILGL 495 D IRE L L Sbjct: 513 VDHH-DPTSIREGLSL 527 >gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella denitrificans OS217] gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella denitrificans OS217] Length = 502 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 148/472 (31%), Positives = 229/472 (48%), Gaps = 46/472 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-----SSAYSLQDFSAT 85 + +S DSR + G +F+A+ G++ DG +I QA AQGA A +V S +++ + Sbjct: 21 SSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQGAVAALVHTDDPDSHGKVENLGSG 80 Query: 86 IRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 I TP VV+ LS A++ Y P+ ++ +TGT+GK+SV+ + Q+ G Sbjct: 81 I---TPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGITGTNGKTSVSQLIAQLTSLLG 137 Query: 142 LSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + +G T + Q D+ TT + + L +G ++E SSHGL Q R+ Sbjct: 138 GKAAVMG-TLGNGLWGQLVDSGNTTADAVTVMAQLHDFDVKGADICAMEVSSHGLVQGRV 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + FTNL RDH+DYH +Y +AK RLF+ P A++ DD + + Sbjct: 197 TAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQ--FPSLKYALLNLDDDTGAQWFEE 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--------------- 304 + SV K A + ++ G DF + Sbjct: 255 LAATKRKGFSVSPNAK--------ACYYTDKLHFDDAGVQGDFYYHDFGENAVSQHKARL 306 Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PL G F + N L A G+ A +L KL V GR E + +G + VDY Sbjct: 307 VSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERF-SLPQGASLVVDY 365 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT +++E LK +R G++ VFGCGGDRD+GKRP+M + A AD +VT DN RS Sbjct: 366 AHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQAAERFADKLMVTSDNARS 425 Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 EDP I +++ G+ + + +R+ A++ + D++++AGKGHET Sbjct: 426 EDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDIVLLAGKGHET 477 >gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Desmospora sp. 8437] Length = 399 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 138/397 (34%), Positives = 207/397 (52%), Gaps = 20/397 (5%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171 H N++AVTGT+GK++V ++ I + G + IG + I + TTP + L Sbjct: 6 HDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAVELQ 65 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + + +G TH +EASSH L R G + FTNL +DH+DYH T Y AK Sbjct: 66 RGFRKMVDRGCTHAVIEASSHALHLGRTRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKG 125 Query: 232 RLFEEL------LPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVC 283 LF +L ++ P A++ DD + M+ +V++ G + + + + Sbjct: 126 ILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYME---TTSAQVITYGVEHPADVRGENIR 182 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + T++ D L G+F VYNAL AA + + GI + E L ++ VP Sbjct: 183 FYSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKGVP 242 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E V + + VDYAHT +SLE +L +R T G II V GCGGDRD+GKRP M Sbjct: 243 GRLEAVDA-GQPFPVLVDYAHTPDSLENVLTTVRGFTKGNIICVVGCGGDRDRGKRPQMA 301 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNK 458 +IA + ++ ++T DNPR+EDP +I +++ G+ F E +R EAI A+ Sbjct: 302 RIAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAEAIGYAVRHAQA 361 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE-ILG 494 DV+++AGKGHET + NG + D ++ R ILG Sbjct: 362 DDVVLIAGKGHETYQEI-NGVRHDFDDREVARTAILG 397 >gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 477 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 141/491 (28%), Positives = 250/491 (50%), Gaps = 28/491 (5%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E++ ++ + E+ I V+++S+ ++ G+ FVAI GN EDGH +I AI GA Sbjct: 4 FEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIENGAS 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKS 127 I+ + + ++ + I+ V++ R L+ +++L Y I++VTG++GK+ Sbjct: 64 LIIHTEDIAYKEGISYIK-------VEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + V + + IG + I TTP + K ++ + + ++S Sbjct: 117 TTSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLS 176 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E+SSHGLDQ R+ G+ + G FTNL ++H+DYH+T YF AKM LF++ K + A I Sbjct: 177 LESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQ--AKHTVANI 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD Y K+ + N ++ G + + + +V+ V+G +F+ Sbjct: 235 --DDPYGKKAKELYPN----TITYGINNENADYRAENVVKKDGKVSYEVKG--VEFILNT 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 +++VYN L A + +G V + ++K + V RFE++ N+ G I +D+AHT Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYM-ENNLGLNIIIDFAHTP 345 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + E + K++ +I V+G GDR++ R GK D ++VT D+P+ + E Sbjct: 346 FAYECLFKSVP--QGHKIYAVYGINGDRNKEFRVSTGKACADNDVFSVVTTDDPKFDTVE 403 Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +II GI ++ +R +AI+ AI NK D + + GKG E + EK Sbjct: 404 NISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKGEENFLKLKGNEKTP 463 Query: 483 SVDCDIIREIL 493 + + ++E+L Sbjct: 464 YSERETLKEVL 474 >gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus subsp. aureus COL] Length = 492 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 19 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKEQSLP------ 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A LY H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 73 -ANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 131 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 132 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL ++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 186 RLRSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 244 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 245 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 294 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 295 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 353 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 354 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 412 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 413 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 464 >gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 494 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 230/465 (49%), Gaps = 39/465 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N++++DSR +AG IFVA G D H F + QG + +VV+ A LQ Sbjct: 22 EVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQ-------G 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V +T + S LYG + + + VTGT+GK+S+A+ + I ++ G S Sbjct: 75 DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGSAY 134 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G I+ TTP + L K + G +++E SSHGL RL G++ Sbjct: 135 LGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVEFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262 F+NL +DH+D+H T +AY +AK LF +L L ++ II ADD +S +K Sbjct: 195 VAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFST-YLKSVTP 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVY 313 + + +F+ IH S++G FDF+ P G F + Sbjct: 254 YESLTYGIEQEAQFM----ATNIHE------SLQGVTFDFVTPFGTYPVRSPYIGRFNIA 303 Query: 314 NALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+AA L + + G V + + L V GR E + S + +DYAHT++ + + Sbjct: 304 N-LMAAMLGVWVKGAPLETVTKVVADLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMAKL 361 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ Sbjct: 362 IDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVA-SRADYVIFTPDNPANDDPKMLTAEL 420 Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G ++E +R E IR AIE+ D +V+A KG E I+ Sbjct: 421 AKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465 >gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus aureus subsp. aureus ST398] Length = 494 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ L Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQPLP------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 E ++ + + +F+ + + S++G FDF+ P Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AKNIQESLQGVSFDFVTPFGTYPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G +++ +E L V GR E + S + +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actF] Length = 526 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L L + P R + ++ DSR ++ G I+ A+ G + G F QA + GA Sbjct: 24 DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 83 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127 A + A + + +A + P+LVV + R + A+R+YG +++L +TGTSGK+ Sbjct: 84 AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 139 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + A ++ + +G S+ IG T+ + D RL TTP L + + +GV Sbjct: 140 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 196 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSH L R+DG+ F NL +H+++H + YF AK +LF + Sbjct: 197 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 255 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302 ++ DD Y + ++ A + G+ + V T+ +G + Sbjct: 256 -VVNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPA 314 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359 PLPG F V N L A G D + E + + VPGR E V G+ Y Sbjct: 315 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 370 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T DN Sbjct: 371 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 430 Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 PRSEDP I A ++ G +P E+G+ + AI + D +++AGKGHE Sbjct: 431 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 489 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V NG + D ++++E + Sbjct: 490 QGQDV-NGVVRPFDDREVLKEAI 511 >gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris StLB046] Length = 489 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 227/467 (48%), Gaps = 35/467 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + I +++ DSR +Q +F+ I G DGH + +A+ GA IV L A + Sbjct: 21 KLITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGATVIVTERLLQLDGEIAQV- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQIC----QRSG 141 +V NT + L + A++ + ++I+ VTGT+GK+SV+ + I ++S Sbjct: 80 ------IVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHNILIGLGEKSA 133 Query: 142 LSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 LS F + S+ + L T I+ AK S+G + +E SSHGL R Sbjct: 134 LSGTIGFNLNGVLYESANTTSDSLNTQQMIFRAK------SEGCRAMVMEVSSHGLALGR 187 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKE 255 L G+ FTNL DH+D+H T + Y N K LF +L L K ++ ADD +S+ Sbjct: 188 LAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSE- 246 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYN 314 + A + + G I C N Q + F L GEF +YN Sbjct: 247 --RYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIYN 304 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A + A G +++E +E L V GR E + ++ +I++DYAHT +++E + Sbjct: 305 VLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSD-LPIQIFIDYAHTPDAIEKAIN 363 Query: 375 NIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 ++I + G GG RD+ KRP M + A +AD I+T D+PR E+ + I ++ Sbjct: 364 AAMPYKKPENKLIFLVGTGGGRDKTKRPTMAEKA-SVADYVILTTDDPRYEEFDSITGDL 422 Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G+ + G+R EA+R A+ + N D+++ AGKGHE I+ N Sbjct: 423 AKGMKHKNYACIGDRAEAVRHAVSVANPGDIIIFAGKGHEDYQIIEN 469 >gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase [Staphylococcus pseudintermedius ED99] Length = 494 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 230/465 (49%), Gaps = 39/465 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N++++DSR +AG IFVA G D H F + QG + +VV+ A LQ Sbjct: 22 EVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQ-------G 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V +T + S LYG + + + VTGT+GK+S+A+ + I ++ G S Sbjct: 75 DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGSAY 134 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G I+ TTP + L K + G +++E SSHGL RL G++ Sbjct: 135 LGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVEFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262 F+NL +DH+D+H T +AY +AK LF +L L ++ II ADD +S +K Sbjct: 195 VAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFST-YLKSVTP 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVY 313 + + +F+ IH S++G FDF+ P G F + Sbjct: 254 YESLTYGIEQEAQFM----ATNIHE------SLQGVTFDFVTPFGTYPVRSPYIGRFNIA 303 Query: 314 NALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L+AA L + + G V + + L V GR E + S + +DYAHT++ + + Sbjct: 304 N-LMAAMLGVWVKGAPLETVTKVVADLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMAKL 361 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + + ++I + G G+RD K P MG++A AD I T DNP ++DP+ + AE+ Sbjct: 362 IDAVEPFVKQKLIFLVGMAGERDLTKTPEMGRVA-SRADYVIFTPDNPANDDPKMLTAEL 420 Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G ++E +R E IR AIE+ D +V+A KG E I+ Sbjct: 421 AKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465 >gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Wolbachia endosymbiont of Cadra cautella] Length = 284 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/276 (41%), Positives = 167/276 (60%), Gaps = 9/276 (3%) Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 +DYH++ YF AK RLF+E+LPKE AI+ AD E++ A G +V++ G + Sbjct: 1 MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSD 60 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 I L K N Q +TI + + ++ FP+ G+FQ YN L A G+ I+ G+D + + Sbjct: 61 ITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQRMC--I 118 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +KL GR E V T + +VDYAHT ++L+ L +++ + +I++VFGCGG+RDQ Sbjct: 119 DKLASPSGRMEKVNTFA-----FVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQ 173 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 KR MGKIA LA IVTDDNPR EDP KIR +I+ P +E G+R +AI I + Sbjct: 174 TKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIA 233 Query: 457 NKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + ++ +L+VAGKGHE I+ + S D ++IRE Sbjct: 234 HDENMILLVAGKGHERFQIIEGQSLEFS-DVEVIRE 268 >gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 178 str. F0338] Length = 529 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 158/492 (32%), Positives = 235/492 (47%), Gaps = 44/492 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+ S + W+FVAI G + G F A GA A++ +A + + S + Sbjct: 47 RIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAGASRAVSEGL-- 104 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVA-------SFVQQICQ 138 P++VVD+ R ++ A+ +YG HP LAVTGT+GK++ + + V Sbjct: 105 GLPVVVVDDPRSHVAALAAAVYG-HPARDLVTLAVTGTNGKTTTSYLMRAALAAVHPRAA 163 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G ++GP S + R T SP+ + + L+ G +E S+H L HR Sbjct: 164 LCGTVETRVGPVSF-----EAERTTAESPV-VQRFLALARECGEGAAVIETSAHALSLHR 217 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +DG+ +FTNL DH+DY+ + YFNAK LF K A++ DD + + + Sbjct: 218 VDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFTPEHAKR--AVVCVDDEWGRRL-- 273 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQV 312 A +A V +V +V A H + +V +G + P+ GE V Sbjct: 274 -AASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNV 332 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSL 369 N VA +A G+ L LE +PGR E V N G + VDYAHT +L Sbjct: 333 QNTAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKV--NPVPGNQPLVVVDYAHTPEAL 390 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L++ R +T+GR+ +VFG GDRD KR + IA AD+ VTD+NPR+EDP+ IR Sbjct: 391 EWTLRSTRELTAGRLHIVFGTDGDRDASKREHLAGIAAAGADVLWVTDENPRTEDPQSIR 450 Query: 430 AEIIHGI----PGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 ++ GI P + R +A+R AI D +++ GKG E V G K Sbjct: 451 DYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIITGKGAEWYQEV-EGIKH 509 Query: 482 MSVDCDIIREIL 493 D + RE+L Sbjct: 510 RYNDVPVAREVL 521 >gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia J2315] gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Burkholderia cenocepacia J2315] Length = 512 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 153/484 (31%), Positives = 232/484 (47%), Gaps = 47/484 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +FVA + D F+ A V+ L D A P Sbjct: 30 QLHADTRSLQAGDVFVAYAVDGADNRAFM-ADAVARGAAAVLYQPDGLTDAPAV-----P 83 Query: 92 I-LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIG 148 + L V + AS YG +++LAV TGT+GK+S ++ + L++ Sbjct: 84 VALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA-----TALTALHQ- 137 Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P + I + TTP L ++L+ L + G V++E SSH L Q R++G Sbjct: 138 PCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSSHALHQGRVNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH T AY AK +LF + A++ DDA + ++++ Sbjct: 198 TAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVLNRDDAAGRRLLEKLA 255 Query: 262 NAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 RV ++ Y + + V A + D D G F V Sbjct: 256 G---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNV 312 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370 N L G +A + L +E+L V GR + +G + + +DYAHT ++L+ Sbjct: 313 SNLLAVLGSLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALD 372 Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ Sbjct: 373 KTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQH 432 Query: 428 IRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I ++I G+ E+ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 433 IIDQVIAGMTA-PERARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTF 490 Query: 484 VDCD 487 D D Sbjct: 491 SDQD 494 >gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mollicutes bacterium D7] gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Coprobacillus sp. D7] Length = 488 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 242/478 (50%), Gaps = 26/478 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + KI + SDSR+++ IF I G DGH ++ A+ QGA+ IV S +L + I Sbjct: 13 DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSK--NLNYYHDKI 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 V+NT L+ S L+ P N I+ VTG+SGK+ VAS ++ + S Sbjct: 71 ----IYFRVENTLVELNR-VSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S IG S + ++ TTP +YL + L ++ GV V++EASSHGL R+DGI Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G +H+D+H T++ Y AK +LFE + P AI+ +DD M +N Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDL---NFMTLKNN 240 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R+L+ G + + + K +H + + IS +G F P+ F +YN L G+ Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 IA+G D +V++ +E + + GR E + T + I +DY ++ E I + + + Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVI-IDYCQHISNYEAIFEYVDGVRQ 359 Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435 GRII V G G R+ R +G++A D I+T + R ED + I+ EI+ Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IE +R AI AIE+ K D++++ GKGHE + G+ D I++E L Sbjct: 420 NSVIIE--SRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEAL 475 >gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoflavus Tu4000] Length = 452 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 145/439 (33%), Positives = 219/439 (49%), Gaps = 37/439 (8%) Query: 13 ELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL QL + P Q E + ++ DSR ++ G ++ A+ G + G F+ QA GA A+ Sbjct: 19 ELSGQLGVAAPEQTAE--VTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAV 76 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129 + A + + +A + P LVVD+ R + A+ +YG ++L +TGTSGK++ Sbjct: 77 LTDPAGAERVAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTT 132 Query: 130 ASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 A V+ GL + G T+ D R+ TTP L + + +G Sbjct: 133 AYLVE-----GGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDA 187 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 V++E SSH L R+DG G FTNL +H+++H + YF AK +LF P+ Sbjct: 188 VAMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLF---TPERGRL 244 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKD 299 ++ ADD Y + + K AG V++ +G + + + +G+ Sbjct: 245 GVVNADDEYGRRLAK---EAGVPVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGER 301 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PLPG F V N L A G+D + + + VPGR E V G+ Y Sbjct: 302 IAARSPLPGPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA----GQPY 357 Query: 360 ---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD+ KR MG A LAD A++T Sbjct: 358 LAVVDYAHKTDAVESVLRALRKVTEGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLT 417 Query: 417 DDNPRSEDPEKIRAEIIHG 435 DNPRSEDP I A ++HG Sbjct: 418 SDNPRSEDPLSILATMLHG 436 >gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei S13] gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei S13] Length = 514 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella sp. MR-4] Length = 493 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 153/491 (31%), Positives = 235/491 (47%), Gaps = 44/491 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L+DL+ FP E+ +++ DSR I+ G +F+A+ G+K DG FI Sbjct: 2 MLLRDLLAPWFPYA-----------GEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLY---GKHPEN 116 +A+AQGA A++V + S+++ I + + + K +S A+ Y Sbjct: 51 DKALAQGAIAVLVHTD-SIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMG 109 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIY 169 I+ +TGT+GK+S + Q+C + L + G + + + D+ TT I Sbjct: 110 IVGITGTNGKTSTS----QLCAQ--LVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAIT 163 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L + L + +GV ++E SSHGL Q R+D + FTNL RDH+DYH + Y A Sbjct: 164 LMRQLYEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAA 223 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K LF ++ DD + N ++ + H + N Q Sbjct: 224 KQMLFR--FDALRHGLVNLDDPVGAAWLSELANVPAKMWGFSIEA---HTEAAFYTKNAQ 278 Query: 290 QVTISVEGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 V+ K + D PL G F + N L A G+D + + L V Sbjct: 279 FNDQGVQAKLVWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVA 338 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E T + + VDYAHT +++E L +R +G + VFGCGGDRD+GKRP+MG Sbjct: 339 GRMERF-TTADNITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMG 397 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD 460 + A AD +VT DN RSEDP +I +II G+ + + +R+ AI+ + D Sbjct: 398 QAAEQCADRIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGD 457 Query: 461 VLVVAGKGHET 471 V+++AGKGHET Sbjct: 458 VILLAGKGHET 468 >gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces sp. SA3_actG] Length = 521 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L L + P R + ++ DSR ++ G I+ A+ G + G F QA + GA Sbjct: 19 DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 78 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127 A + A + + +A + P+LVV + R + A+R+YG +++L +TGTSGK+ Sbjct: 79 AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 134 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + A ++ + +G S+ IG T+ + D RL TTP L + + +GV Sbjct: 135 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 191 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSH L R+DG+ F NL +H+++H + YF AK +LF + Sbjct: 192 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 250 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302 ++ DD Y + ++ A + G+ + V T+ +G + Sbjct: 251 -VVNYDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPA 309 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359 PLPG F V N L A G D + E + + VPGR E V G+ Y Sbjct: 310 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 365 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T DN Sbjct: 366 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 425 Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 PRSEDP I A ++ G +P E+G+ + AI + D +++AGKGHE Sbjct: 426 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V NG + D ++++E + Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAI 506 >gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105] Length = 498 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 189/383 (49%), Gaps = 40/383 (10%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKA 173 I+AVTGT+GK++V ++ Q + G + IG LTTP + + Sbjct: 109 TIIAVTGTNGKTTVTRWLAQSLNQLGKKAAVIGTLGYGEPDQLKAHTGLTTPDVVGVHHL 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L L G V +EASS GL+Q RL + + FTNL +DH+DYH AY +KM L Sbjct: 169 LHELRQAGFDTVCIEASSIGLEQRRLACVSIDVALFTNLSQDHLDYHGDMAAYGRSKMIL 228 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN-------------AGCRVLSVGYQGKFIHLK 280 P A++ ADD++ E + + A C+++SV +Q K Sbjct: 229 AS--WPTLRLAVVNADDSFGVEFLAHVQHRNIDCSAVGHVSTADCQIVSVAHQEK----- 281 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 Q++ + + G P+ GEF N + + +G D++ V L + Sbjct: 282 -------GQRIELKINGAITQIDTPIIGEFNADNMALVFATLVRLGYDASEVKRALAGVT 334 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQG 397 PGR + + + VDYAHT ++LE L +R + G++ VVFGCGGDRD+ Sbjct: 335 PAPGRMQHIEGEPA---VVVDYAHTPDALEKTLLALRPFANKRMGKLWVVFGCGGDRDRS 391 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTA 452 KRP+MG A+ AD ++T DNPRSE PE I EII GI ++ +E AI A Sbjct: 392 KRPLMGAAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDAPLQNNIHVEVDRPVAIEFA 451 Query: 453 IEMLNKQDVLVVAGKGHETVHIV 475 + N QDV+++AGKGHE+ + Sbjct: 452 VRKANAQDVVLLAGKGHESTQTI 474 >gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polaromonas naphthalenivorans CJ2] Length = 496 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 147/463 (31%), Positives = 223/463 (48%), Gaps = 35/463 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SSAYSLQDF 82 ER I +S+DSR G F+A G DG ++ A+A GA A +V + AY D Sbjct: 15 ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGAQAYGFNDD 74 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 + + A+ +G E + A+TGT+GK+S A ++ Q R Sbjct: 75 R--------VATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRL 126 Query: 141 G-----LSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G + + IG P + ++ N LTTP P+ L + L + +G ++EASS GL Sbjct: 127 GRKCGIVGTLGIGEPGAMVA-----NGLTTPDPVLLQQQLRRFADEGFAACALEASSIGL 181 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++ RLDG ++ FTN +DH+DYH + Y+ AK LF P AII DD+ Sbjct: 182 EEGRLDGTRIQIAVFTNFTQDHLDYHASMPDYWRAKQMLFN--WPGLRAAIINVDDSRGL 239 Query: 255 EVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 E+ V ++ G + + +C + + G+ P+ G + V Sbjct: 240 ELSAALAGTSLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVS 299 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N L A+ + A + L VPGR E + + +DYAHT ++LE +L Sbjct: 300 NLLGVMASLRAMDVPLADAVAACADLLPVPGRTETLAVPGL-PLVVIDYAHTPDALEKVL 358 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + GR+ VFGCGGDRD GKRP+M A AD ++T DNPRSEDP I Sbjct: 359 TALNPVAQGRGGRLWCVFGCGGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIG 418 Query: 431 EIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +++ G+ P + +R AI A+++ QDV+++AGKGHE Sbjct: 419 QMLKGLSRPQVAHVQEDRRAAIAHALQLAQPQDVVLLAGKGHE 461 >gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 305] gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 305] Length = 514 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Nocardioidaceae bacterium Broad-1] gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Nocardioidaceae bacterium Broad-1] Length = 512 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 148/418 (35%), Positives = 212/418 (50%), Gaps = 24/418 (5%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L+V+ RK L ++R+YG +P ++ VTGT GK++ + SG + I Sbjct: 101 PVLLVEQPRKVLGALSARVYG-NPSGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVI 159 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T I LTTP L + + +G ++E SSH L R+DG+ Sbjct: 160 GTVGTRIGGRDVKTPLTTPEAPDLHGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDV 219 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGC 265 F NLGRDH+D+H+T + Y+ AK LF P+ + I+ DD + + + A A Sbjct: 220 AVFLNLGRDHLDFHETVEDYYAAKADLF---TPERAELGIVNIDDEHGRRL---AAEATI 273 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVA-AGL 321 +L+ + + +V G D F PL G++ V N L A A + Sbjct: 274 PILTYALHDDTADWRATDIELRPDGSSFTVHGPDGLSFPAASPLAGDYNVSNTLAALASI 333 Query: 322 CIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A G ++ + V L K VPGR E + + + VDYAH +++E L +R + Sbjct: 334 HHAYGDETVVRDVATALAKGSGVPGRLERI-DEGQPFTVVVDYAHKPDAVEAALGTLRPL 392 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 T R+IVV G GGDRD GKRPIMG+I+ LAD IVTDDNPR+EDP IR +++ G G Sbjct: 393 TESRLIVVIGAGGDRDTGKRPIMGEISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGG 452 Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 E G+R AI AI + D++VVAGKGHET + NG D ++RE L Sbjct: 453 SASVEEIGDRRAAIERAIGLAQPGDIVVVAGKGHETGQEI-NGVTHPFDDRQVVREAL 509 >gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium phytofermentans ISDg] Length = 493 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 157/486 (32%), Positives = 243/486 (50%), Gaps = 40/486 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+I+ + DSR ++ IFV I G DGH F+ + IA+G+ IV S+ D Sbjct: 20 DREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKGSTVIVAEKEVSVPD----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 +L+V NTR+ L+ + S Y +P L G +G + V I +G+ Sbjct: 75 --GVTLLLVSNTREALA-YLSAAYFDYPAEKLKTIGITGTKGKTTTTYMVHSILSEAGIK 131 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + IG TI + D + TTP + + + + G T V +E SS GL HR+ Sbjct: 132 TGLIG---TIETMIGDTVIPANNTTPESYLVQQYFAKMVEDGCTCVVMEVSSQGLMLHRV 188 Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G G FTN+ DHI H + + Y K LF++ I DD + ++V+ Sbjct: 189 SGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLLFKQC----KVGIANVDDKHMEQVL 244 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQ---QVTISVEG-KDFDFLFPLPGEFQV 312 H C + + G K L+ V +H+K V V+G DF +PG+F V Sbjct: 245 S-GHT--CTLETYGLSEK-ADLRAVDIDLHSKLGNLMVLYKVKGLCDFPVQVNIPGKFTV 300 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN+L A +C I + + E L K+ V GR E V S+ + +DYAH + SL+ + Sbjct: 301 YNSLTAIAICRHFNISTERIKEVLTKVKV-KGRVEPVEV-SKKFTMMIDYAHNAMSLQSV 358 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L +R R++ +FGCGG+R + +R MG+I+ +LAD IVT DNPR E+P+ I +I Sbjct: 359 LSTLREYEPKRLVCLFGCGGNRSKDRRFEMGEISSNLADYTIVTSDNPRFEEPQDILNDI 418 Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 + G+ +I +R EAIR +I + D++++AGKGHE + G K D ++ Sbjct: 419 VVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKGHENYQEI-RGVKHHMDDREL 477 Query: 489 IREILG 494 I+EI+ Sbjct: 478 IQEIVA 483 >gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D/UW-3/CX] gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276] gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 6276s] gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia trachomatis D/UW-3/CX] gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis A/HAR-13] gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9768] gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11222] gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/11074] gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis G/9301] gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-EC] gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D-LC] Length = 483 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 247/467 (52%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G IF+A G +G+ + QA+A GA A V+SS Y+ F + ++ Sbjct: 23 VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ ++ + A+R Y +++ +TGT+GK++V+ V+++ +RSG + I Sbjct: 78 ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI +NR+ TTP I L K + + Q ++ +E SS G+ R+ + Sbjct: 135 G---TIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK + F LP++ A++ D Y+ + Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314 G + +V Y IH + A + ++ + G +D +FP L GE VYN Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYN 299 Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 L A L + +G D A ++ + L GR + + +Y+DYAHT ++L+ Sbjct: 300 VL--ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDN 355 Query: 372 ILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + + GR+I+VFGCGGDRD+ KRP+M K++ + + VT DNPR+EDP++I Sbjct: 356 VCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414 Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 A+I G ++ + +R AI AI M + +D+++VAGKGHE I Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461 >gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2M] gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2] gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2] gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD2M] Length = 513 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 157/485 (32%), Positives = 244/485 (50%), Gaps = 48/485 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + +AT N P Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83 Query: 92 I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + L V + AS YG + +LA VTGT+GK+S + ++ + L++ Sbjct: 84 VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCSQWIA-----AALTALHQ- 137 Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH+T +AY AK +LF + A++ DDA + ++++ Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255 Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311 RV ++ Y Q +++ A+ + T + D D G F Sbjct: 256 G---RVRTIAYGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369 V N L G +A + L + +L V GR + +G + + +DYAHT ++L Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372 Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 E L +R I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ Sbjct: 373 EKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432 Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +I+ G+ ++ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490 Query: 483 SVDCD 487 D D Sbjct: 491 FSDQD 495 >gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Paenibacillus sp. HGF5] Length = 494 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 242/477 (50%), Gaps = 55/477 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR ++ G +F+ + G+ DGH F QA +GA A+VV + Sbjct: 22 EITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKGAAALVVERKLEV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V ++R ++ A+ Y + ++ VTGT+GK++ ++ I GL + Sbjct: 73 DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTTTYLIETIMNDFGLKTGL 132 Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + Q + TTP + L + L+ +++ G +E SSH L+Q R+ G Sbjct: 133 IG-TIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTDF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESP---AIIYADDAYSKEVM 257 FTNL +DH+DYH T + Y AK F L ES A++ ADD S Sbjct: 192 RTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADDDASAYFA 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPG 308 K+ V++ G G+ ++ ++I+ +G F D + G Sbjct: 252 KQT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMVG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F VYNA+ A + G+ + LE + V GR E V + + VDYAHT + Sbjct: 301 KFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPDG 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ + GR+I VFGCGGDRD+ KRPIMGKIA +D+ +VT DNPR+EDPE I Sbjct: 360 LENVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPELI 419 Query: 429 RAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I G+ +E G +R +AI AIEM + DV+++AGKGHET ++ Sbjct: 420 LKDIEAGL---VEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473 >gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM 43827] Length = 527 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 229/457 (50%), Gaps = 28/457 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 + V+ ++H+ G +F A+ G + G F +A+ +GA A+ L D R Sbjct: 58 VTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAV-------LTDEDGASRPE 110 Query: 89 --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRS-GLS 143 + P+LV + R L ++R+YG+ P +A+ G +G S + ++ + C R+ G Sbjct: 111 LRDVPVLVHRDPRAALGALSARVYGE-PAQRVALWGVTGTSGKTTTSYMIESCLRAEGRV 169 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G T I+ D+ TTP L L+ + +GV +E SSH L R+ G Sbjct: 170 TGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGA 229 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G+FTNL +DH+D+H + YF AK LF+ +E ++ D + + ++K Sbjct: 230 GFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARRE---VVCVDGEWGRRLVKPGTV 286 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 VG +V A + +G + LPG+F V NAL+A G Sbjct: 287 TVSATAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGCL 346 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 A G+ + ++ L ++ V PGR + V + VDY+H ++ + L +R +G Sbjct: 347 HASGVGAEAIVRGLAEVQV-PGRMQRVDVGQDFTAV-VDYSHKPAAVVLALDAVRARATG 404 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IP-- 437 R+I V GCGGDRD KRP+MG A +++ +VTDDNPRSEDP IRA ++ G +P Sbjct: 405 RVITVLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEA 464 Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R AI A+ + DV+VVAGKGHET Sbjct: 465 ERGEVVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHET 501 >gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402] Length = 488 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 241/478 (50%), Gaps = 26/478 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + KI + SDSR+++ IF I G DGH ++ A+ QGA+ IV S L + I Sbjct: 13 DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSK--DLNYYHDKI 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 V+NT L+ S L+ P N I+ VTG+SGK+ VAS ++ + S Sbjct: 71 ----IYFRVENTLVELNR-VSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKY-CS 124 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S IG S + ++ TTP +YL + L ++ GV V++EASSHGL R+DGI Sbjct: 125 SGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDGI 184 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G +H+D+H T++ Y AK +LFE + P AI+ +DD M +N Sbjct: 185 NFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPT-GWAILNSDDL---NFMTLKNN 240 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R+L+ G + + + K +H + + IS +G F P+ F +YN L G+ Sbjct: 241 TQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTGV 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 IA+G D +V++ +E + + GR E + T + I +DY ++ E I + + + Sbjct: 301 LIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVI-IDYCQHISNYEAIFEYVDGVRQ 359 Query: 382 --GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435 GRII V G G R+ R +G++A D I+T + R ED + I+ EI+ Sbjct: 360 GHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICKTIQKEIVDI 419 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IE +R AI AIE+ K D++++ GKGHE + G+ D I++E L Sbjct: 420 NSVIIE--SRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQIVKEAL 475 >gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis Bt4] Length = 514 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +FVA + D FI A+A+GA A++ Y + F A Sbjct: 30 QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309 RV ++ Y I A +++ V +V G F P G Sbjct: 255 LAGRVRTIAYG---IDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGT 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L +E+L V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L+ +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+ Sbjct: 372 ALEKTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEE 431 Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 9] gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pakistan 9] gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pakistan 9] Length = 514 Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFA--WRGLRCAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LTGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Frankia alni ACN14a] gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Frankia alni ACN14a] Length = 476 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 239/460 (51%), Gaps = 30/460 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ-DFSATIRS 88 + V+ DSR + G ++ A+ G G F AIA+GA A++ + + + + + Sbjct: 2 VRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPAA 61 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LV + R+ L+ A+R++G + L VTGT+GK++ A + + +G ++ Sbjct: 62 ALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 121 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T+ + +RL TTP L L+ + +GV ++E SSH L QHR D + Sbjct: 122 IG---TVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADAL 178 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+D+H T YF AK LF +P + + A+I D + + + R Sbjct: 179 HFAGALFTNLSQDHLDFHPTMADYFEAKASLF---VPGRAAAAVIGVGDEWGRRLAARRP 235 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A +V + + + G+ + PLPG F + NAL A L Sbjct: 236 DA--VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALAL 293 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378 +A+G+D A + L VPGR E V G+ + VD+AHT +++ +L +R Sbjct: 294 LVAVGVDPAAAAAGIGALPGVPGRMERVDA----GQPFLALVDFAHTPDAVTTLLATVRP 349 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + GRIIVV GCGGDRD+GKRP+MG A LAD+AI+T+DNPRSEDP I A ++ G+P Sbjct: 350 LVKGRIIVVLGCGGDRDRGKRPLMGAAAATLADLAILTNDNPRSEDPADILAAMLAGVPT 409 Query: 439 FIEKGNR--IEAIR-----TAIEMLNKQDVLVVAGKGHET 471 R +E R A+ QD +VVAGKGHE+ Sbjct: 410 AARAAGRVLVEPDRAAAIAAAVAAAGPQDAVVVAGKGHES 449 >gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermosynechococcus elongatus BP-1] gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermosynechococcus elongatus BP-1] Length = 497 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 154/477 (32%), Positives = 239/477 (50%), Gaps = 41/477 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ + +S + G +F+ + G + +G F P A+A GA A VVS ++ A + Sbjct: 23 QEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSALAAGAIAAVVSPQAKPREGEACV- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 +VV + + A+ Y +P ++L VTGT+GK++ V+ + R G + Sbjct: 82 -----IVVPDIERACGRLAAAFY-NYPSQHLSLLGVTGTNGKTTTTHLVEHLLNRVGYPT 135 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S + TTP + L + L+ G +E SSH L Q R+ G + Sbjct: 136 ALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAAVDAGCRFGVMEVSSHALAQDRVWGCQ 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---- 259 +FTNL +DH+DYH+ + YF AK +LF K AI+ DD + + + ++ Sbjct: 196 FEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTADYLKGR-AILNGDDPFGQRLAQQLPRD 254 Query: 260 -------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + +A R ++ Y+ + A+H + D PL G+F V Sbjct: 255 RYWTYGLSKDADFRAENLNYRSNGV----TGAVHT------PLGSGTLDS--PLVGQFNV 302 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM 371 N L A + A+G+ +L L VPGR E V + + VDYAHT +SLE Sbjct: 303 ANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDITVVVDYAHTPDSLEN 362 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ R G++I VFGCGGDRD+ KRP MG IA LAD +VT DNPR+E+P++I + Sbjct: 363 LLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVTSDNPRTENPQRILDD 422 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I+ GIP I +G+R +AI AI D +++AGKGHE I+ G +K+ D Sbjct: 423 ILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDYQIL--GTEKVHFD 477 >gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans ATCC 17616] gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans ATCC 17616] gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans ATCC 17616] gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Burkholderia multivorans ATCC 17616] Length = 513 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 243/485 (50%), Gaps = 48/485 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + +AT N P Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83 Query: 92 I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + L V + AS YG + +LA VTGT+GK+S ++ + L++ Sbjct: 84 VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137 Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH+T +AY AK +LF + A++ DDA + ++++ Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255 Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311 RV ++ Y Q +++ AI + T + D D G F Sbjct: 256 G---RVRTIAYGIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369 V N L G +A + L + +L V GR + +G + + +DYAHT ++L Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372 Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 E L +R I GR+I +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ Sbjct: 373 EKTLDALRPIAVARGGRLICMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432 Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +I+ G+ ++ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490 Query: 483 SVDCD 487 D D Sbjct: 491 FSDQD 495 >gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1655] gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1655] Length = 514 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + +V TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + AI+ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAIVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Tu6071] Length = 521 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 157/503 (31%), Positives = 248/503 (49%), Gaps = 37/503 (7%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L L + P R + ++ DSR ++ G I+ A+ G + G F QA + GA Sbjct: 19 DLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLGAV 78 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127 A + A + + +A + P+LVV + R + A+R+YG +++L +TGTSGK+ Sbjct: 79 AALTDPAGAERVLAAGL----PVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKT 134 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + A ++ + +G S+ IG T+ + D RL TTP L + + +GV Sbjct: 135 TTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATDLQALFAVMRERGVD 191 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSH L R+DG+ F NL +H+++H + YF AK +LF + Sbjct: 192 AVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRG- 250 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302 ++ DD Y + ++ A + G+ + V T+ +G + Sbjct: 251 -VVNHDDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPA 309 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359 PLPG F V N L A G D + E + + VPGR E V G+ Y Sbjct: 310 RAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDE----GQPYLAV 365 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T DN Sbjct: 366 VDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDN 425 Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 PRSEDP I A ++ G +P E+G+ + AI + D +++AGKGHE Sbjct: 426 PRSEDPLAILAAMLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 V NG + D ++++E + Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAI 506 >gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5] Length = 507 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 199/401 (49%), Gaps = 33/401 (8%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+LVV + R L A+ +YG ++ VTGT+GK+S + V+ + +G + Sbjct: 89 TGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTG 148 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + D+ TTP L L+ GV V +E SSH L R+ G++ Sbjct: 149 LIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGRVGGVRF 208 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKR 259 G +TN G DH+D+H + YF AK +LF+ E+L + PA ++ Sbjct: 209 DVGGYTNFGSDHLDFHADEADYFAAKAKLFDGRCRVEVLNHDDPA------------LRP 256 Query: 260 AHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317 H G S G + Q+ T+ +G LPG V NAL+ Sbjct: 257 LHKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKN 375 A L +A+G+D + VPGR E V ++ RG VDYAH +N++E +L Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRG---VVDYAHKANAIEAVLIA 373 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +T GR+I V G GGDRD+GKRP+MG +A AD+ +VTDDNPR+EDP IRAE++ G Sbjct: 374 LRDLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAG 433 Query: 436 IPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IE R AI A+ M DV+ V GKG E Sbjct: 434 AYAAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLGKGQE 474 >gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 519 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 226/461 (49%), Gaps = 36/461 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G IF+A G DG + + +A+A+GA A +V + A + Sbjct: 35 LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALARGAAACLVER----EGVEAFRFGAEGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR---SGLSSFQI 147 + + + L A+ +G + +++AVTGT+GK+S ++ + SGL++ Sbjct: 91 AALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTSTTWWLADALNQLAGSGLAAH-- 148 Query: 148 GPTSTISSFA-------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G I + + LTTP P+ L +A + + G+ ++EASS GL +HRL Sbjct: 149 GGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAGFVANGLGACAIEASSIGLAEHRLA 208 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G++L FTN +DH+DYH AY+ AK LF+ P A++ DD E+ Sbjct: 209 GMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFD--WPGLQAAVVNIDDPRGGELADTL 266 Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + G + + + + T++ + + G + ++N L Sbjct: 267 AQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAEGVQAHVLQTRVIGHYNIHNLLAVV 326 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A+GI L +L VPGR E + + + VDYAHT ++LE L+ +R + Sbjct: 327 ASLRALGIPLEHALWACAQLAPVPGRMELIHEPDQP-LVAVDYAHTPDALEQALQALRPV 385 Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GR+ VFGCGG+RD+ KRP+MG+IA AD IVT DNPR+E P I EI+ G Sbjct: 386 AEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADAVIVTSDNPRNEAPGAILHEILLG- 444 Query: 437 PGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKGHE 470 G ++A I AI + +DV+++AGKGHE Sbjct: 445 ---TVAGTTVQAEPERDAAIARAIAEADGRDVVLIAGKGHE 482 >gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus lugdunensis HKU09-01] Length = 494 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 231/469 (49%), Gaps = 43/469 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + ++++DSR ++G IFVA G D H F I QG + IVV S ++ Sbjct: 20 DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVE------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + ++V T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 74 -GDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINEQKTKGAN------TTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DDA+S+ Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSE 246 Query: 255 EVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPG 308 + A + + G Q K IH+ + Q VT ++ +++ P G Sbjct: 247 YL---ASVTPYEIFTYGIDNDAQFKAIHINESL-----QGVTFELDTPFGNYNVQSPYVG 298 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F + N + A + GI ++E ++ L V GR E + N I +DYAHT++ Sbjct: 299 KFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLI-IDYAHTADG 357 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + ++ ++ ++I + G G+RD K P MG +A AD I T DNP ++DP+ + Sbjct: 358 MNKLIDAVKPFVKRKLIFLVGMAGERDLTKTPEMGTVAC-RADYVIFTPDNPANDDPKML 416 Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E+ G ++E +R E IR AIE+ D +V+A KG E I+ Sbjct: 417 TSELAKGATHDNYVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465 >gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 23344] gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei GB8 horse 4] gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710b] gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei SAVP1] gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10229] gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10247] gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei PRL-20] gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 14] gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 576] gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 10399] gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pasteur 52237] gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei FMH] gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei JHU] gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710a] gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 406e] gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei 2002721280] gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 23344] gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia pseudomallei 1710b] gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei SAVP1] gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei NCTC 10247] gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei FMH] gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei JHU] gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei 2002721280] gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 406e] gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei Pasteur 52237] gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei ATCC 10399] gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 576] gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei GB8 horse 4] gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia mallei PRL-20] gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1710a] Length = 514 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + +V TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis B/Jali20/OT] gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis B/Jali20/OT] Length = 483 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 247/467 (52%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G IF+A G +G+ + QA+A GA A V+SS Y+ F + ++ Sbjct: 23 VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ ++ + A+R Y +++ +TGT+GK++V+ V+++ +RSG + I Sbjct: 78 ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI +NR+ TTP I L K + + Q ++ +E SS G+ R+ + Sbjct: 135 G---TIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK + F LP++ A++ D Y+ + Sbjct: 192 FLAGVLTNIISDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LFP----LPGEFQVYN 314 G + +V Y IH + A + ++ + G +D +FP L GE VYN Sbjct: 246 GSQARAVSYA---IHQE---ADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGEHNVYN 299 Query: 315 ALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 L A L + +G D A ++ + L GR + + +Y+DYAHT ++L+ Sbjct: 300 VL--ASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDN 355 Query: 372 ILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + + GR+I+VFGCGGDRD+ KRP+M K++ + + VT DNPR+EDP++I Sbjct: 356 VCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQII 414 Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 A+I G ++ + +R AI AI M + +D+++VAGKGHE I Sbjct: 415 ADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461 >gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei K96243] gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 91] gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 7894] gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei BCC215] gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei K96243] Length = 514 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + +V TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LAGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Thermobifida fusca YX] Length = 534 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 159/490 (32%), Positives = 238/490 (48%), Gaps = 44/490 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G ++VA+ G + G F QA GA A++ A D +A R Sbjct: 56 VTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTDPAG--YDRAAATR-- 111 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V + R L A+ +YG HP ++ TGTSGK++V+ V+ + +G+ + Sbjct: 112 LPVITVPDPRSRLGDVAAWIYG-HPARELLLIGTTGTSGKTTVSYLVESGLREAGMRTGL 170 Query: 147 IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+ D R LTTP L + + + V ++E SSH L R+ G+ Sbjct: 171 VG---TVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGRVAGV 227 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + FTNL +DH+D+H YF K RLF K A++ DD++ + ++ R Sbjct: 228 RYDVAVFTNLSQDHLDFHADLHDYFETKARLFTPEFAKV--AVVNRDDSFGRTLIDRITE 285 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQV 312 G ++ F A V + G F + P LPG F V Sbjct: 286 QGAIPVTT-----FSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFNV 340 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A I G+ + + VPGR E V I VDY+H ++E + Sbjct: 341 ANAMAAIVALIEAGVPLPTAVAGVAAARGVPGRMERVDEGQDFTAI-VDYSHKPGAIEAV 399 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L ++R IT GR+ +V GCGGDRD+GKRP+MG+ A LAD I+TDDNPRSEDP I + Sbjct: 400 LTSLRPITEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIITSM 459 Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 + G+ + +R AI A+ DV+VVAGKGHE V G++ + Sbjct: 460 LEGVAKVPVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKGHERGQHV--GDRILPF 517 Query: 485 DC-DIIREIL 493 D D++RE + Sbjct: 518 DDRDVLREAI 527 >gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. AA4] Length = 519 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 240/460 (52%), Gaps = 47/460 (10%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 ++H+ G +F + G + G F QA+A GA A++ S D A + P+LV Sbjct: 53 AQHVLPGDLFAGLPGARAHGADFSDQALAAGAAAVLTDP--SGADRPALRDAPVPVLVHP 110 Query: 97 NTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + R L A+ +YG+ P ++L VTGTSGK++ + V + +G ++ IG T Sbjct: 111 DPRAALGEIAAWIYGE-PSLHLSVLGVTGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETR 169 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 I+ + TTP L L+ + +GVTHV +E SSH L R++G + G+FTNL Sbjct: 170 IAGERLASGFTTPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNL 229 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +DH+D+H+ + YF AK LF+ + + ++ D A+ + ++ + ++V Sbjct: 230 SQDHLDFHKDMEEYFAAKSLLFDG---RSTTEVVVVDSAWGQALLT------PQTVTVSI 280 Query: 273 QGKFIHLKKVCAIH----NKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + L + I +Q T+ +G PLPG F V NA++AA + + GI Sbjct: 281 EAGADALWRAADIEATPAGEQTFTLLGPDGLSRAAKIPLPGTFNVANAVLAAAILASAGI 340 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--------VDYAHTSNSLEMILKNIRTI 379 D+ ++ L + V PGR E R+Y VDYAH ++ L +R Sbjct: 341 DADDIVAGLAAVEV-PGRME---------RVYLGQEFTAVVDYAHKPAAVAQGLDALRAR 390 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436 T GRII V GCGGDRD KRP+MG+ A+ +D+ IVTDDNPRSEDP IRA ++ G Sbjct: 391 TEGRIITVLGCGGDRDTAKRPMMGEAAVRRSDLLIVTDDNPRSEDPAAIRAAMLAGARAV 450 Query: 437 -PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +E +R EAI A+ + D++++AGKGHET Sbjct: 451 GPAAGGEVLEIADRREAIAHAVSLAGPGDIVLIAGKGHET 490 >gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. D5] Length = 486 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 154/482 (31%), Positives = 238/482 (49%), Gaps = 34/482 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I +DSR ++ G FV I G DGH F+ + +GA A++V + I Sbjct: 20 EAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEVAQKGAAAVIVEREVEAPEDMTVI 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 R V ++R L+L ++ +G +P + + + G +G + I + Sbjct: 80 R-------VADSRYALALMSAAYFG-YPADKMKIIGITGTKGKTTTTYMIKSILEGVGHK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + D ++ TTP + + + + G V +E SS GL HR GI Sbjct: 132 VGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVVMEVSSQGLMLHRTAGI 191 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNLGRDHI + H+ + Y K LF++ I DD Y ++V RA Sbjct: 192 PFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLLFQQC----RLGIANVDDEYFEDVFSRA 247 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNA 315 CRV + G+ K L+ V + V V G DFD +PG+F VYN+ Sbjct: 248 ---TCRVETFGFSEK-ADLRAVDTHLVSRPGYLGVAYHVSGLMDFDVEIDIPGKFSVYNS 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +C + + + L K+ V GR E + + + +DYAH + SLE +L Sbjct: 304 LTAIAVCRHFQVPVEQIKKAL-KVANVKGRIEMIPVSDEF-TLMIDYAHNAMSLESLLTT 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI--- 432 ++ R++ +FGCGG+R + +R MG+++ LAD++I+T DNPR E+P+ I +I Sbjct: 362 LKEYEPARLVCLFGCGGNRSRERRYEMGEVSGRLADLSIITSDNPRFEEPQAIIDDIKTG 421 Query: 433 IHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 IH G ++E +R EAI+ AIE + DV+V+AGKGHE + + M +IRE Sbjct: 422 IHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGKGHEDYQEIKGVKYPMDERV-LIRE 480 Query: 492 IL 493 IL Sbjct: 481 IL 482 >gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium intracellulare ATCC 13950] Length = 514 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 153/482 (31%), Positives = 230/482 (47%), Gaps = 34/482 (7%) Query: 11 FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P L + P R + V+ ++ ++ G +F A+ G+ G + AI +G Sbjct: 17 LPALAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERG 76 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A V++ A + + A + + P+LV + R L A+ +YG E + V T Sbjct: 77 AVA-VLTDAGGVAEMGA-LGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSG 134 Query: 128 SVAS--FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVT 183 + ++ + +G ++ IG T I D + LTTP L L+ ++ QGV Sbjct: 135 KTTTTYLIESALRAAGHTAGLIG-TIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVD 193 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242 V +E SSH L R+DG + G FTNL RDH+D+H T YF AK LF+ P + Sbjct: 194 TVVMEVSSHALTLGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRAR 253 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGK 298 ++ DD + + RA +A ++V +G+ H + ++ I G Sbjct: 254 RVVVCVDDDAGRAMAARAGDA----ITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGA 309 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 LPG + V N LVA + A+G+ L + VPGR E + G+ Sbjct: 310 RHQLGVRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQAR-VPGRMEEIDA----GQD 364 Query: 359 Y---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VDYAH +L +L + R+ VVFG GG+RD GKR MG A +LAD+ +V Sbjct: 365 FLALVDYAHKPGALRAVLTTLARPDR-RLAVVFGAGGERDPGKRAPMGATAAELADLVVV 423 Query: 416 TDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 TDDNPR EDP IR EI+ G +E +R +AIR A+ DV+++AGKGH Sbjct: 424 TDDNPRGEDPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKGH 483 Query: 470 ET 471 ET Sbjct: 484 ET 485 >gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Chlamydophila felis Fe/C-56] Length = 485 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 154/492 (31%), Positives = 248/492 (50%), Gaps = 61/492 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR+I G IF+A G + DG+ F A+ GA A VVSS Y Sbjct: 24 EVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVENGAIA-VVSSIY----------- 71 Query: 89 NTPILVVDNTRKFLSLFASRL---YGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 N + VV LSL ++L Y +P ++ +TGT+GK++V+ ++ + Sbjct: 72 NPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKTTVSHLIKFLFDACDK 131 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 S IG TI +NR+ TTP L K L+ + +T +E SS GL R Sbjct: 132 PSGLIG---TIEHILGNNRIQDGFTTPESCLLQKYLAEMVKSNLTAAVIETSSIGLVLDR 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L ++ G TN+ DH+D+H + + Y AK++LF + L A++ D +K+ ++ Sbjct: 189 LANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQ-LSDSGLAVVNNDLPQAKQFLE 247 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGE 309 R + V Y + + A + + S G DFD + PL G+ Sbjct: 248 -----ATRAVPVTYGIEQL------ADYRASNLRFSPFGADFDLIHKGEIFPCHSPLIGQ 296 Query: 310 FQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 + VYN L A + + D ++ + + GR E + S IY+DYAHT ++ Sbjct: 297 YNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLEPI--QSGPCPIYIDYAHTPDA 354 Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 L+ + + +RT+ + G++IVVFGCGGDRD+ KR IM ++ ++ A+VT DNPR EDPE Sbjct: 355 LDNVCQTLRTLLPSGGKLIVVFGCGGDRDRSKRKIMAQV-VEKYGFAVVTSDNPRGEDPE 413 Query: 427 KIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I EI GF+++ +R +AI A+ + + +D+++VAGKGHET I + Sbjct: 414 TIVNEICS---GFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETYQIFKHQTIA 470 Query: 482 MSVDCDIIREIL 493 D +++ E+L Sbjct: 471 FD-DREVVHEVL 481 >gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Rothia dentocariosa M567] Length = 572 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 157/516 (30%), Positives = 250/516 (48%), Gaps = 59/516 (11%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q E + +S DSR ++ ++VA+ G K G F +A+ A AI+ Sbjct: 42 EALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101 Query: 73 VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 +A + A + +LV D+ R + A+ +YG N AVTGT+GK++ Sbjct: 102 TDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYAVTGTNGKTT 161 Query: 129 VASFVQQICQ-----RSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++ + + ++GL + QI + + + LTTP +++ L+ + +GV Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQI----LVDGVSVPSALTTPESVHVHSLLAIMGERGV 217 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +H ++E SSH +D HR+DG+ FTNL +DH+D H T Q YF++K +LF P+ + Sbjct: 218 SHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLF---TPERT 274 Query: 243 P-AIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEG 297 A+I ADD + +++++ A G V V G + L +V A I+VE Sbjct: 275 ECAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYG--MGLAEVPAEFGPLDWAVINVER 332 Query: 298 KDFDFLFP--------------LPGEFQVYNALVAAGLCIAIG-------IDSALVLEHL 336 F LP +F V NA +AA L + IG I + + Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAA-LMVYIGASEEERIILRPALADGT 391 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +VPGR + + S VD+AH + L L+ + GR+I+VFG G+RD Sbjct: 392 ALTPIVPGRMQLI---SLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDH 448 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------- 447 KRP+MG+IA ADI IVTDD+P EDP IR ++ G +G R Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508 Query: 448 -AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 AI AIE+ + +D +++AG+GHET V + ++ Sbjct: 509 VAIARAIELADARDAILIAGRGHETAQDVAGTDVQL 544 >gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama te--2,6-diaminopimelateligase [Streptomyces scabiei 87.22] Length = 555 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 226/463 (48%), Gaps = 38/463 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR ++ G ++ A+ G + G F QA GA A++ + + + +A + Sbjct: 83 EVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVAVLTDPSGAERAAAAGL-- 140 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ R + A+ +YG+ ++L +TGTSGK++ A V+ GL + + Sbjct: 141 --PALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTAYLVE-----GGLRTVR 193 Query: 147 -IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G T+ D R+ TTP L + + +GV V +E SSH L R+DG Sbjct: 194 STGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVMEVSSHALVLGRVDG 253 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRA 260 F NL +H+++H + YF AK +LF P+ S ++ DD Y + ++ A Sbjct: 254 CVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSRLGVVNLDDEYGRRLVDEA 310 Query: 261 HNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G+ + V + + +G+ PLPG F V N L A Sbjct: 311 TVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPLPGSFNVANTLAAV 370 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376 GID + + + VPGR E V G+ Y VDYAH ++++E +LK + Sbjct: 371 AALAVAGIDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLKAL 426 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R +T GR+ +V GCGGDRD KR MG L+D A++T DNPRSEDP I A ++ G Sbjct: 427 RKVTEGRLHIVLGCGGDRDTTKRAPMGAAMARLSDTAVLTSDNPRSEDPLAILATMLEGA 486 Query: 436 --IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P E+G +R AI + D ++VAGKGHE Sbjct: 487 ASVPAH-ERGEVLLFEDRAAAIAATVARARPGDTVLVAGKGHE 528 >gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70] gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis 70s] gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis D(s)2923] gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydia trachomatis Sweden2] gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/150] gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydia trachomatis E/11023] Length = 483 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 242/461 (52%), Gaps = 38/461 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G IF+A G +G+ + QA+A GA A V+SS Y+ F + ++ Sbjct: 23 VRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAIA-VLSSLYN--PFLSVVQ-- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ ++ + A+R Y +++ +TGT+GK++V+ V+++ +RSG + I Sbjct: 78 ---IIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSCLVRELMERSGRRTGLI 134 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TI +NR+ TTP I L K + + Q ++ +E SS G+ R+ + Sbjct: 135 G---TIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVSSIGMALGRVRETE 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +AG TN+ DH+D+H + + Y AK + F LP++ A++ D Y+ + Sbjct: 192 FLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS-LPEKGIAVVNLDCEYAPSFLN----- 245 Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + +V Y Q ++ + I +GK F L GE VYN L A Sbjct: 246 GSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLIGEHNVYNVL--AS 303 Query: 321 LCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 L + +G D A ++ + L GR + + +Y+DYAHT ++L+ + + + Sbjct: 304 LAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFP--VYIDYAHTPDALDNVCRILL 361 Query: 378 TI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + GR+I+VFGCGGDRD+ KRP+M K++ + + VT DNPR+EDP++I A+I G Sbjct: 362 QLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS-EHYGFSFVTSDNPRTEDPDQIIADICKG 420 Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 ++ + +R AI AI M + +D+++VAGKGHE I Sbjct: 421 FSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGYQI 461 >gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2] Length = 487 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 140/452 (30%), Positives = 227/452 (50%), Gaps = 28/452 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR ++ G +FVAI G + DGH FI QA+ GA A+V A L Sbjct: 24 EIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVENGAAAVVGEEALEL--------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P + V ++R L AS Y + I+ +TGT+GK++ A ++ I + +G + Sbjct: 75 NVPYIKVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKTTTAYILKHILETAGRTCSL 134 Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G S I + N TTP + + K LS + V +E SSH L+Q R +G++ Sbjct: 135 LGTVSNIINNREYKTSN--TTPDALQIQKMLSKSLDE---FVVMEISSHALEQSRTEGLE 189 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L G FTNL DH+DYH+ YF K ++F LL +I +++ +++ + Sbjct: 190 LDYGLFTNLAHDHLDYHENMDQYFLDKKKIF-TLLKDGGKGVINLYNSWGEKMAEDLQKE 248 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ +G + +K V AI+ + + ++G+ F+ FPLPG VYNA +A + Sbjct: 249 KIPLILLG-DDQCCSIKDV-AINGRTVFILEMKGQSFEIEFPLPGHHNVYNAAMAFLTGV 306 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +GID+A +++ L +PGRFE + + G + VDYAHT ++ E L+ R + R Sbjct: 307 DLGIDTADIIKALAGFPGIPGRFETI-IHPSGAKFVVDYAHTVDAFEYCLEAARQQGAER 365 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEK 442 I ++G G RDQ KR M K + +T D+ E +++ +++ F K Sbjct: 366 IFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTADDLNDESEDEMISQLHRLNKEFGCGK 425 Query: 443 G----NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G +R AI+ A + D + + GKG E Sbjct: 426 GEVIPDRTLAIQKAWREAGESDWIFITGKGPE 457 >gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2] Length = 485 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 221/454 (48%), Gaps = 31/454 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N + SR+++ G IFVAI G K DGH FI +AI+ GA A+V + Y Sbjct: 21 EVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEAISNGAVAVVGEAEYDCLP------- 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V + R+ L A LY + N++ +TGT+GK++ A V+ I Q + S Sbjct: 74 -VPYIKVQDARQALGNLAKTLYCDPSKMHNMIGITGTNGKTTTAYMVKHIFQTASESCSL 132 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ST+S+F L TTP + L K L + V +E SSHGL Q R++GI Sbjct: 133 F---STVSNFVNGTELMSTATTPDILELNKMLRMSMDKNVV---MEVSSHGLHQKRVEGI 186 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G FTNL DH+DYHQ + YFN K LF +LL K AII + + ++++ + N Sbjct: 187 EFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLF-KLLKKNGEAIINSGCPWGRKLINQLKN 245 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 VLS G + L+ + ++ I + P+PG + NAL A Sbjct: 246 KRQSVLSFG-TSENDDLQLLSTKDGVSKIRIQGSNVKLEIKMPMPGNHNLQNALAAILCA 304 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 G++ + +E VPGRFE S+ +DYAHT + LE +L+ ++ + Sbjct: 305 YRAGVNVNDIKRAVESFPGVPGRFE--EYYSQSVNFILDYAHTPDGLENLLETVKKLNGN 362 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 RI+ VFG G++D KR M I+ D I+T D+ EK+ ++ + +I Sbjct: 363 RIVHVFGFRGNKDMTKRLAMLDISAKYCDKIILTLDDLNGVALEKMILDLKKSV-NYIGT 421 Query: 443 GN------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 N R AI A + K D +V+ GKG E Sbjct: 422 NNIHLIIDRTRAIEYAWKNSIKGDRIVITGKGPE 455 >gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex V453] Length = 495 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 240/478 (50%), Gaps = 57/478 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR ++ G +F+ + G+ DGHLF QA +GA A+VV + Sbjct: 22 EITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAAEKGAAALVVERKLEV--------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V ++R ++ A+ + + ++ VTGT+GK++ ++ I GL + Sbjct: 73 DLPQVIVKDSRFAMAGLANTFFDQPSARMKMIGVTGTNGKTTTTYLIETIMNDHGLKTGL 132 Query: 147 IGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG SF TTP + L + L+ +++ G +E SSH L+Q R+ G Sbjct: 133 IGTIQMKYGNQSFPMPR--TTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTD 190 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP----AIIYADDAYSKEV 256 FTNL +DH+DYH T + Y AK F L K+ A++ ADD S Sbjct: 191 FRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEKSRKYAVLNADDDASAYF 250 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLP 307 K V++ G G+ ++ ++I+ +G F D + Sbjct: 251 AKIT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMV 299 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+F VYNA+ A + G+ + LE + V GR E V + + VDYAHT + Sbjct: 300 GKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPD 358 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 LE +L+ + GR++ VFGCGGDRD+ KRPIMGKIA +D+ +VT DNPR+EDP+ Sbjct: 359 GLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVLVTSDNPRTEDPDL 418 Query: 428 IRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I +I G+ IE G +R +AI AIEM + DV+++AGKGHET ++ Sbjct: 419 ILKDIEAGL---IEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473 >gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. Y412MC10] Length = 494 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 55/477 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR ++ G +F+ + G+ DGH F QA +GA A+VV + Sbjct: 22 EITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKGAAALVVER---------KLEV 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V ++R ++ A+ Y + ++ VTGT+GK++ ++ I GL + Sbjct: 73 DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTTTYLIETIMNDFGLKTGL 132 Query: 147 IGPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + Q + TTP + L + L+ +++ G +E SSH L+Q R+ G Sbjct: 133 IG-TIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVMEVSSHALEQGRVKGTDF 191 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL----LPKESP---AIIYADDAYSKEVM 257 FTNL +DH+DYH T + Y AK F L ES A++ ADD S Sbjct: 192 RTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDESARKYAVLNADDDASAYFA 251 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPG 308 K+ V++ G G+ ++ ++I+ +G F D + G Sbjct: 252 KQT---AAEVITYGL-GEDADVRA-------SNISITAQGTSFHVDTFRGSADISIRMVG 300 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F VYNA+ A + G+ + LE + V GR E V + + VDYAHT + Sbjct: 301 KFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV-DEGQPYAVIVDYAHTPDG 359 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 LE +L+ + GR++ VFGCGGDRD+ KRPIMGKIA +D+ VT DNPR+EDPE I Sbjct: 360 LENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDVVFVTSDNPRTEDPELI 419 Query: 429 RAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +I G+ +E G +R +AI AIEM + DV+++AGKGHET ++ Sbjct: 420 LKDIEAGL---VEDGVATESYKLIVDRRKAIEKAIEMASPGDVVLIAGKGHETYQLI 473 >gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis TXDOH] Length = 514 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 153/489 (31%), Positives = 235/489 (48%), Gaps = 43/489 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +FVA + D FI A+A+GA A++ Y + F A Sbjct: 30 QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQV 312 RV ++ Y +++ A + + T ++ + D G F V Sbjct: 255 LAGRVRTIAYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNV 314 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLE 370 N L G +A + L +E+L V GR + +G + + VDYAHT ++LE Sbjct: 315 SNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALE 374 Query: 371 MILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+P+K Sbjct: 375 KTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQK 434 Query: 428 IRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 I +I+ G+ +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 435 IIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFS 493 Query: 485 DCDIIREIL 493 D D R L Sbjct: 494 DQDHARLAL 502 >gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106a] gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei B7210] gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106b] gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106a] gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia pseudomallei 1106b] Length = 514 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + F A + Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDSAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + +V TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T +AY AK +LF + A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLR--CAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GE 309 RV ++ Y I A +++ V +V F + G Sbjct: 255 LTGRVRTIAYG---IDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGA 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L + KL V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L +R I G +I +FGCGGDRD KRP+MG IA LAD +VT DNPRSED Sbjct: 372 ALEKTLDALRPIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSED 431 Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ G +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 507 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 150/496 (30%), Positives = 238/496 (47%), Gaps = 52/496 (10%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +++ P ++ Q S W + I ++ S+ + +F+ I G ++DGH +I +A + Sbjct: 6 LFERIPAVLCQGS-----W-DTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYIQEAAER 59 Query: 67 GAEAIVVSSAYSLQDFSATIRSN-------------------TPILVVDNTRKFLSLFAS 107 GA A +V A+ + SA++ N I+ V NTR+ + A+ Sbjct: 60 GAAACLVEEAFWKK--SASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAAWAAA 117 Query: 108 RLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLT 163 Y ++P L V G +G S ++ I + +G + +G I + T Sbjct: 118 AFY-RYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRAERT 176 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQ 221 TP I + + L ++ G +E SS GL HR D I G FTNLGRDHI H+ Sbjct: 177 TPEAIDIQRYLRKMADSGCRFAVMEVSSQGLKLHRSDSILFDVGVFTNLGRDHIGPKEHK 236 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLK 280 Y + K LF+ K I DD Y +E+ K +A C+V + + K + Sbjct: 237 DMAEYAHYKSLLFQ----KCCFGIGNIDDPYYREIFK---DASCQVCTYSCRQKADVQAS 289 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + ++ Q+ + ++ PGEF VYNA+ A +C GID ++ + L+ + Sbjct: 290 DIMLVNRNGQLGTFFKVNGEEYAVSAPGEFSVYNAVAAITVCRHYGIDQEIIRKALKTIR 349 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V PGR E + N RG + +DYAH + SL+ IL+ +R ++ V+FGCGG R +R Sbjct: 350 V-PGRVEVI-DNDRGYLLLIDYAHNAMSLKNILETMRRYHPRQLWVLFGCGGGRSAARRR 407 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIE 454 MG +A AD ++T DNPR E+PE+I I G+ KG +R EA+R + Sbjct: 408 EMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKE--TKGQYQMMVDRKEAMRFMLA 465 Query: 455 MLNKQDVLVVAGKGHE 470 D+L++AGKGHE Sbjct: 466 QGRPGDILILAGKGHE 481 >gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium resistens DSM 45100] Length = 552 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 151/505 (29%), Positives = 232/505 (45%), Gaps = 65/505 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + S ++AG +F A+ G K G F A ++A V + + +D Sbjct: 23 EVTSAAIGSTDVRAGGLFCAVPGLKTHGAQF-----AGTSQATAVLTDPAGEDILEAQGV 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+VD+ R+++ A+ +YG HP L+V G + +S + + +++ L + +G Sbjct: 78 ELPRLIVDDVREWMGPVAAEIYG-HPSRRLSVIGIT-GTSGKTTTSYLVEKALLPNHSVG 135 Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T I+ +LTTP + L+ + +GVTHV +E SSH L+ R+ GI Sbjct: 136 IIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHVVMEVSSHALELGRVHGIDF 195 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-----SPAIIYADDAYSKEVM-- 257 +FTNL +DH+D+H T + YF AK +LF E ++ A+I DD + + + Sbjct: 196 DVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHDVKLPAAVICVDDEWGQRMAQL 255 Query: 258 --KRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNK---------QQVTISVEGKD------ 299 +R +AG V V + H A+ + V ++ G+ Sbjct: 256 ASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIPTWVLESVQVTPSGRQEIRFHT 315 Query: 300 -----------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ L G F V N+ VA +G D +HL + VPGR + Sbjct: 316 GATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGEDVEAAAQHLRDVQ-VPGRMQA 374 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKI 405 V + VDYAH ++ +++ + GRI +V G GG+RDQ KRP MG Sbjct: 375 V-DEGQDFLAMVDYAHKPGAVAAVVRTLADYLPTKEGRIGIVIGAGGNRDQDKRPKMGYE 433 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKG------------NRIEAIRTA 452 A +AD VTDDNPR EDP IR I G GF E+G +R EAI A Sbjct: 434 AALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFAERGVEKKTVTLANIADRAEAITAA 493 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTN 477 ++ D +VVAGKGHET +V Sbjct: 494 VQWAQPGDAIVVAGKGHETGQLVAG 518 >gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp. ART55/1] Length = 404 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 207/401 (51%), Gaps = 36/401 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKA 173 ++ VTGT GK++VA ++ + R G + +G I N TTP IYL + Sbjct: 3 VIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVN--TTPGTIYLHRK 60 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKM 231 L+ + + G + +E SS GL R+ G++ +TNL DHI + H+T Y K Sbjct: 61 LADMVANGAEYCVMEVSSQGLMHGRVSGVEFDICVYTNLAPDHIGRNEHRTFAEYGRWKR 120 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------------GKFIH- 278 LF K A+I ADD YS + A NAG V+ G + IH Sbjct: 121 SLF----SKCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTAAGDGNVCMAGAIHR 176 Query: 279 --LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 L +V I + + T +G+ +PGEF VYN+L A C IGI ++ + Sbjct: 177 LILHRVMGIGYECERT---DGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDSQ 233 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 + V GR E V RI++DYAH + SLE +L +R R+I +FGCGG+R Sbjct: 234 SDMKV-RGRLEPVEIPGYA-RIFIDYAHNAVSLENVLTTLRQYRPKRLICLFGCGGNRSA 291 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTA 452 G+R MG ++ LAD+ ++T DNPR E PE I +I + G +++ +R++AIR A Sbjct: 292 GRRKGMGFVSGRLADMTVITSDNPRFESPEAIMTDIETGVLEGGGEYVKICSRLDAIRYA 351 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +E+ ++ D++++AGKGHET + +M + ++IR+IL Sbjct: 352 LEISDRDDIVLLAGKGHETYQDIEGRRTQMD-EREMIRQIL 391 >gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A Synechococcus GOM 3M9] Length = 511 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-- 244 +E SSH L Q R+ G + A FTNL +DH+DYH + QAYF AK LF + L + PA Sbjct: 183 MEVSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPLLQSGPARA 242 Query: 245 IIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++ +DD + ++ +R + R + G + + L+ + +T EG F Sbjct: 243 VVNSDDPWGLQLAERLGDRCWRSSLSEPGAELRMSDLEMTARGVRGRLITPLGEGP---F 299 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV---GTNSRG-GRI 358 + PL G F + N L A G+ + + +LE +E VPGR E V G ++ + Sbjct: 300 VSPLLGRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADAHALPTV 359 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE L R + GR+I VFGCGGDRD+GKRP M IA LAD +VT D Sbjct: 360 LVDYAHTPDGLENALAASRPFSRGRLICVFGCGGDRDRGKRPQMASIAARLADRVVVTSD 419 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+EDP++I +++ GIP + +G+R AI AI +D+++VAGKGHE I+ Sbjct: 420 NPRTEDPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLVLVAGKGHEDYQIL 479 Query: 476 TNGEKKMSVD 485 G K+ D Sbjct: 480 --GTDKVHFD 487 >gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 514 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 232/476 (48%), Gaps = 35/476 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTP 91 V+ S +Q G ++V + G + G F A A GA A++ D A R S P Sbjct: 42 VTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDP-----DGLAEARDSGLP 96 Query: 92 ILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++ + R L A+ ++ ++P + VTGT+GK+SV + + ++ G+ + G Sbjct: 97 VILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT---GL 153 Query: 150 TST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 TST I + +RLTTP L L+ + V V++E S+ L +HR+DG+ Sbjct: 154 TSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFD 213 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 +F NL DH+D + + YF AK F+ + ++ D + + +++++ Sbjct: 214 VAAFINLSHDHLDDYADFEEYFEAKAAFFDPDRARR--GVVSLDTVWGQRIVEQSR---I 268 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF---PLPGEFQVYNALVAAGL 321 + ++ Q +V + T +EG D L P+PG F NA +A + Sbjct: 269 PMTTISAQPGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVM 328 Query: 322 CIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + G D V L++ +PGR E V ++ G +VDY HT ++ E L+ +R Sbjct: 329 LVESGYDLDAVAHVLDRDGGIQAYIPGRAERVSGDT-GPLFFVDYGHTPDAFEQTLQALR 387 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 T G++++VFG GDRD KR MG IA LAD+ ++TD +PR EDP IRA +I G Sbjct: 388 PFTPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGAR 447 Query: 438 GFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + E + AIRTA+ ++ + D ++VAG GHE H V + S D Sbjct: 448 AAVPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVAGKKIPFSARDD 503 >gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter alkaliphilus AHT 1] Length = 502 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 204/409 (49%), Gaps = 24/409 (5%) Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRS 140 A + ++ ++ V + R L+L ++ Y +P LA+ G +G + + + + Q S Sbjct: 70 AELETSATVVTVPDVRMALALVSACFY-DYPSRELAMIGVTGTNGKTTTTYLIDALLQNS 128 Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G ++ +G I + TTP L L + +GVT+ ++E SSH L HR Sbjct: 129 GAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHALAWHRT 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--EELLP----KESPAIIYADDAYS 253 G TN+ DH+D+HQT Y +K +LF + P + A+I DD + Sbjct: 189 IGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVINGDDKHW 248 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQ 311 + A V+ G H++ + V +E + + G F Sbjct: 249 QHF---ADQTPGEVMLYGLS-NHCHVRANDVKVERDAVNFRLETPVGGTEITLKMTGLFS 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 VYN+L A + + GID A + +E + VPGRFE V + + VDYAHT + LE Sbjct: 305 VYNSLAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDAG-QNFTVIVDYAHTPDGLEN 363 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+ R R++ VFGCGGDRD+ KRP+MG+ A +D IVT DNPRSEDPEKI E Sbjct: 364 VLQAAREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEKIIDE 423 Query: 432 IIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I+ G+ I+K +R AIR A+E+ K DV+++ GKGHET + Sbjct: 424 ILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITGKGHETTQV 472 >gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD1] gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia multivorans CGD1] Length = 513 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 157/485 (32%), Positives = 243/485 (50%), Gaps = 48/485 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ Y + +AT N P Sbjct: 30 QLHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVL----YQPEGLAAT--PNAP 83 Query: 92 I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + L V + AS YG + +LA VTGT+GK+S ++ + L++ Sbjct: 84 VALAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137 Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 138 PCAIIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH+T +AY AK +LF + A++ DDA + ++++ Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLA 255 Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311 RV ++ Y Q +++ A+ + T + D D G F Sbjct: 256 G---RVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFN 312 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369 V N L G +A + L + +L V GR + +G + + +DYAHT ++L Sbjct: 313 VSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 372 Query: 370 EMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 E L +R I GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ Sbjct: 373 EKTLDALRPIAVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQ 432 Query: 427 KIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I +I+ G+ ++ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 433 AIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRA 490 Query: 483 SVDCD 487 D D Sbjct: 491 FSDQD 495 >gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 555 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 148/501 (29%), Positives = 235/501 (46%), Gaps = 50/501 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 RE + ++ DSR + G ++ A+ G + G F A+ A V++ + +AT Sbjct: 40 REVHVRGITHDSRQVGPGDLYAALPGTRAHGADFA-GQAAEAGAAAVLTDGDGAERAAAT 98 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS------VASFVQQICQR 139 P++VV + R L AS ++ +++L + T V S ++ R Sbjct: 99 ---GLPVIVVPDVRAVLGTAASWVFKDPAQDLLLIGTTGTSGKTTVTYLVESGLRHAGMR 155 Query: 140 SGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +GL ++G +SS LTTP L + + +GV+ ++E SSH L Sbjct: 156 TGLVGTVEMRVGDERVVSS------LTTPEATDLHGLFALMRERGVSAAAMEVSSHALAL 209 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKE 255 R+ G + FTNL +DH+D+H + YF+AK RLF P+ A++ ADD + + Sbjct: 210 SRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFT---PEYCDIAVVNADDRFGRA 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFP------- 305 ++ G ++ + A+ + V + G F + P Sbjct: 267 LVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRLGAMGSAFRIVGPGGMEANA 326 Query: 306 ---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGR 357 LPG F V NA+ A + G+ + + VPGR E V N+ + Sbjct: 327 SVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVPGRMEPVVANAVPHAFQDFT 386 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDY+H ++E +L +R T G + +V GCGGDRD+ KRP+MG+ A L+D ++T+ Sbjct: 387 ALVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAKRPLMGEAAARLSDQLVITN 446 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGH 469 DNPR+EDP I A ++ G+ E+ +R EAIR A+E DV+VVAGKGH Sbjct: 447 DNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIRLAVERARPGDVVVVAGKGH 506 Query: 470 ETVHIVTNGEKKMSVDCDIIR 490 ET V GE D +++R Sbjct: 507 ETGQYV-KGEVLPFDDREVLR 526 >gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae 22.4-21] Length = 393 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 191/375 (50%), Gaps = 28/375 (7%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174 ++ VTGT+GK++++ + Q + G + +G F Q + + TT S + + +L Sbjct: 13 LVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN-GLFGQIVEAKNTTGSAVEIQSSL 71 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ + Y AK RLF Sbjct: 72 STFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLF 131 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 EL +I ADD + + +A ++V F KV + + + I Sbjct: 132 TEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KVGSHQWMKAINIH 181 Query: 295 VEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 K D F PL G F V N L+ ++ G +L + L V Sbjct: 182 YHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVC 241 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E + ++ + VDYAHT ++LE L R G + +FGCGGDRD+GKRP+M Sbjct: 242 GRMEMIRYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMA 300 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQD 460 ++A A+ IVT DNPR+E +I A+I+ G + G +R +AI+ AIE + D Sbjct: 301 QVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVEND 360 Query: 461 VLVVAGKGHETVHIV 475 V+++AGKGHE I+ Sbjct: 361 VILIAGKGHEHYQII 375 >gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium sp. HGF2] Length = 486 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 150/486 (30%), Positives = 228/486 (46%), Gaps = 60/486 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +A ++ + G DGH FI I +G + IV S ++ + V Sbjct: 21 DSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVD------DMKKGVAYIQV 74 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI------CQRSGLSSFQ 146 +N + L+ AS YG HP + VTGT+GKS++ S ++ + C G S Sbjct: 75 ENVNRTLNRVASMFYG-HPSRKMKVFGVTGTNGKSTITSIIRDVYSHFAPCGYIGTISIS 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + S LTTP + + K + + G+ V++E SSHGL+ R+ + Sbjct: 134 YGEVTLPPS------LTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRVQSVDFDV 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 F+NL DH+D+H T + YF AK +LF L KE A++ ADDAY V + A Sbjct: 188 AVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-LKKEGVAVLNADDAY---VDQLADATEAS 243 Query: 267 VLSVG------YQGKFIHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 V++ G YQ + I ++K + +H ++ +S L + +YN L Sbjct: 244 VVTYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTN---------LVALYNIYNLL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373 A GI L +L + + GR E + G+++ VD+AHT + +E + Sbjct: 295 GAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDE----GQLFNVIVDFAHTPDGMEKVF 350 Query: 374 KNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + IT II VFG G RD KR + G+IA D I+T+D+PR EDP +I E Sbjct: 351 EYAKDITEDGHSIIAVFGSAGKRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANE 410 Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I GI FI +R AIR AIE N +D +++ GKG E G + D + Sbjct: 411 IKSGISDTNNIFI--ADRYAAIRQAIESANVKDTVLILGKGDEVFMYREFGREPWMGDHN 468 Query: 488 IIREIL 493 + R + Sbjct: 469 VARHCI 474 >gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia thailandensis E264] Length = 514 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 157/492 (31%), Positives = 235/492 (47%), Gaps = 49/492 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +FVA + D FI A+A+GA A++ Y + F A Sbjct: 30 QLHADTRSLQAGDVFVAYAVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDPAT 85 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V AS YG + + AV TGT+GK+S ++ + L++ + P Sbjct: 86 SLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----AALTALRE-P 139 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 140 CAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 199 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH+T AY AK +LF A++ DD + ++ N Sbjct: 200 AFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFA--WRGLHCAVVNRDDPAGRRLLA---N 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP---------GE 309 RV ++ Y I A +++ V +V G F P G Sbjct: 255 LVGRVRTIAYG---IDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGT 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSN 367 F V N L G +A + L +E+L V GR + +G + + VDYAHT + Sbjct: 312 FNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPD 371 Query: 368 SLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +LE L+ +R I G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE+ Sbjct: 372 ALEKTLEALRPIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEE 431 Query: 425 PEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 P+KI +I+ G+ +R AI A+ ++DV+++AGKGHE + G+K+ Sbjct: 432 PQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKR 490 Query: 482 MSVDCDIIREIL 493 D D R L Sbjct: 491 AFSDQDHARLAL 502 >gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9605] gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp. CC9605] Length = 501 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 240/477 (50%), Gaps = 35/477 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR + G +F+ + G + DG F QA+ GA A V+ + + ++ Sbjct: 25 LGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALEAGAAAAVIGAEAAAAQPPG---AD 81 Query: 90 TPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++V+ R+ + A+ + HP +A+ G +G + + I + + + Sbjct: 82 APVVVIQEPVARRIGEIAAA--FWDHPCRCMALIGVTGTNGKTTTTHLIEHLAASAGQSV 139 Query: 148 GPTSTISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ + +T T L L+ +S G ++E SSH L Q R+ G + Sbjct: 140 GLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAGCGLAAMEVSSHALAQQRVAGCR 199 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH + + YF AK LF + LL + +++ +DD + + + +R Sbjct: 200 FAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGARSVVNSDDPWGERLAERL- 258 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNA 315 A C S+ +H+ + Q VEG+ + F PL G F + N Sbjct: 259 GAACWRSSLEDPSAELHMSDL------QMTAAGVEGRLISPVGEGRFRSPLLGRFNLMNL 312 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEM 371 L A G+ + + ++LE + + VPGR E V N + VDYAHT + L+ Sbjct: 313 LQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLPPVLVDYAHTPDGLDN 372 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L R +GR+I VFGCGGDRD+GKRP M +IA LAD +VT DNPR+EDP +I + Sbjct: 373 ALSAARPFCAGRLICVFGCGGDRDRGKRPQMAEIAARLADRVVVTSDNPRTEDPRQILDD 432 Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ GIP + +G+R +AI +AI D+++VAGKGHE I+ G +K+ D Sbjct: 433 VVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKGHEDYQIL--GTEKVHFD 487 >gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Finegoldia magna BVS033A4] Length = 477 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 147/475 (30%), Positives = 225/475 (47%), Gaps = 24/475 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + + +I V++DSR I+ +FVAI G + DGH FI +AIA GA IVV+ + D Sbjct: 17 KNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANGANTIVVTEDVTEIDDI 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I+ + + + F S+ ++ VTGT+GK++ +S + I + Sbjct: 77 NYIKVKDARIALAQISNVVCDFPSKKL-----RVIGVTGTNGKTTTSSMISHILEHLDSP 131 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T I + TTP + K L + + + VE SSHGL HRLDGI Sbjct: 132 CTNIGTNGTFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVECSSHGLYLHRLDGI 191 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 NL +H+D+H+ + YF+AKM LFE K I DD Y ++ R + Sbjct: 192 DFDVAVLNNLSMEHMDFHKNMENYFDAKMILFENAKKK----IANVDDEYGRKAKARFED 247 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A S+ + F + V I K I K+ F+ F VYN++ A Sbjct: 248 A--YTFSLENESDF-KAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNSVAAIVAV 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G + + + LE V RFEFV N G I +D+AHT + E I K++ Sbjct: 301 NLLGYELKDIAKSLESFTGVEARFEFV-KNDMGINIVIDFAHTPKAFENIYKSVP--NDK 357 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----G 438 R I V+G GDR R +GKI+ + ++VT D+P+ + E I +I+ GI Sbjct: 358 RKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEENGE 417 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ +R AI+ AIE+ NK D +++ GKG E + EK + + + E+L Sbjct: 418 YVRIKDRKSAIKHAIEIANKGDFVLLLGKGQENFIKLKGNEKTPYSEKETVNEVL 472 >gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora aurantiaca ATCC 27029] Length = 507 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/401 (34%), Positives = 199/401 (49%), Gaps = 33/401 (8%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P+LVV + R L A+ +YG ++ VTGT+GK+S + V+ + +G + Sbjct: 89 TGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRAAGHVTG 148 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + D+ TTP L L+ GV V +E SSH L R+ G++ Sbjct: 149 LIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGRVGGVRF 208 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKR 259 G +TN G DH+D+H + YF AK +LF+ E+L + PA ++ Sbjct: 209 DVGGYTNFGSDHLDFHADEADYFAAKAKLFDGRCRVEVLNHDDPA------------LRP 256 Query: 260 AHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALV 317 H G S G + Q+ T+ +G LPG V NAL+ Sbjct: 257 LHKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKN 375 A L +A+G+D + VPGR E V ++ RG VDYAH +N++E +L Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRG---VVDYAHKANAIEAVLIA 373 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R +T GR+I V G GGDRD+GKRP+MG +A AD+ +VTDDNPR+EDP IRAE++ G Sbjct: 374 LRDLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAG 433 Query: 436 IPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IE R AI A+ + DV+ V GKG E Sbjct: 434 AYAAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLGKGQE 474 >gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8109] gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 8109] Length = 497 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 231/477 (48%), Gaps = 35/477 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++DSR + G +F+ + G + DG F + + + ++ Sbjct: 21 LEAITTDSRRVGPGTLFLGLPGERVDGGSFW---AQALEAGAAAAVIGAAAAAAKPPAAD 77 Query: 90 TPILVVDNT--RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++V+ + R+ L A+ Y HP + + G +G + + I + + + Sbjct: 78 DPVVVIQESVARRIGELSAA--YWDHPCRRMVLIGVTGTNGKTTTTHLIEHLAASTGQSV 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ + + +T A L+ +S G ++E SSH L Q R+ G + Sbjct: 136 GLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAMEVSSHALAQQRVAGCR 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--LLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH + + YF AK LF + LL +++ +DD + + +R Sbjct: 196 FAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVVNSDDPWGARLAERL- 254 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNA 315 A C S+ +H+ + Q VEG+ + F PL G F + N Sbjct: 255 GAACWRSSLEDPSAELHMSDL------QMTAAGVEGRLISPAGEGRFRSPLLGRFNLMNL 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEM 371 L A G+ + + ++LE + + VPGR E V N + VDYAHT + L+ Sbjct: 309 LQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDYAHTPDGLDN 368 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L R +GR+I VFGCGGDRD+GKRP M IA LAD +VT DNPR+EDP++I + Sbjct: 369 ALSAARPFCTGRLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTEDPQRILDD 428 Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ GIP + +G+R +AI +AI D+++VAGKGHE I+ G +K+ D Sbjct: 429 VVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKGHEDYQIL--GTEKVHFD 483 >gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c] gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c] Length = 522 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 235/464 (50%), Gaps = 41/464 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR +Q G ++ A+ G+ G F A A GA A++ A + + ++ + Sbjct: 44 LHGVTHDSRAVQPGDLYAALPGSHAHGADFAAAAAASGAAAVLTDPAGAAA-LAGSV--D 100 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ + R ++ A LYG+ ++ L VTGT+GK++ A V + +G + + Sbjct: 101 LPVVTTADPRSDVAQVADWLYGQPSRSLTLLGVTGTNGKTTSAFLVDAGLRAAGHRTGLL 160 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T I+ D+ TTP L + + +GVT ++E SSH L QHR+DG++ Sbjct: 161 GTVETRIADERVDSVRTTPESSDLQALFAVMVERGVTAATMEVSSHALAQHRVDGLRFAG 220 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+DYH T + YF AK RLFE P+ + A + + A G Sbjct: 221 ALFTNLSQDHLDYHPTMRDYFEAKARLFE---PERTAASVIG-------IEPGAGTWGLE 270 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNAL 316 L+ G + A +T+ G F P LPG F V NAL Sbjct: 271 -LAARVPGSVTYAPDPPADWWADDLTVGARGSSFTARGPRGLAVPMEVRLPGRFNVANAL 329 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMIL 373 A L +A GI+ + L VPGR E + G+ Y VD+AHT +++E +L Sbjct: 330 GALALLVAAGIEPRAAAAGIGTLAGVPGRMEPI----EAGQPYLALVDFAHTPDAVETVL 385 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++R + GR+IVV GCGGDRD+ KRP+MG A LAD+A +T+DNPRSEDP +I A++ Sbjct: 386 TSVRGLVDGRVIVVLGCGGDRDRAKRPLMGAAAARLADLAFLTNDNPRSEDPAEILAQMT 445 Query: 434 HGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKGHE 470 GI ++ I A+ DV+VVAGKGHE Sbjct: 446 AGIDRVATSAAKVTVIPDRAEAIAAAVAEAGPGDVVVVAGKGHE 489 >gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 514 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 155/517 (29%), Positives = 238/517 (46%), Gaps = 39/517 (7%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K F EL+ ++ I+ V+ DSR + G +FVAI G DGH +I A+ QGA Sbjct: 2 KSFAELLLHVTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A+V + Q ATI P +V + + LS A+ Y +P L V G +G Sbjct: 62 VAVVYDDPH--QAPPATI----PSALVADAKVALSPIAAAFY-DYPAQQLEVVGITGSKG 114 Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + S +G ST+ +A R +TP + + L + G Sbjct: 115 KTTTTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGC 174 Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--- 237 + VE++SHGL +RL TN+ +H+DYH T + Y K +LF+ L Sbjct: 175 RYAVVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATS 234 Query: 238 ----------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIH 286 P E AI+ ADD ++ + + A R LS + + ++ + Sbjct: 235 PSQKSILGQPTPVEKVAIVNADDPHAAQ-FRAAAGEQVRHLSYAIHAEADLRATEIVSTS 293 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T +F L G F VYN L A +C+A G+D A ++ LE + + GR Sbjct: 294 KGLRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRM 353 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V + + VDYAH +S E ++ +R +T GR+I VFG G+RD KRPI G+IA Sbjct: 354 EQVELG-QPFSVLVDYAHNPDSFEQVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQGQIA 412 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG-----NRIEAIRTAIEMLNK 458 D+ +TD++PR+ED +I EI G I++ +R AI A+ Sbjct: 413 AKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQALATAQA 472 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 DV+++ GKGHE I +G+ + + + R + GL Sbjct: 473 GDVVLLLGKGHEGNIIYASGDIEWNEHAEAERALQGL 509 >gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium sp. JLS] gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS] Length = 508 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 150/398 (37%), Positives = 206/398 (51%), Gaps = 26/398 (6%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQI 147 P+LV + R L AS +YG HP L V G +G S + V+ + +G + I Sbjct: 95 PVLVHPDPRAVLGAVASTVYG-HPSQHLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLI 153 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I Q + LTTP L L+ + QGV V +E SSH L R+DG+ A Sbjct: 154 GTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAA 213 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G FTNL RDH+D+H T + YF+AK LF+ + + A++ DD + + RA Sbjct: 214 GGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVVCVDDDAGRAMAIRA----G 269 Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321 R ++V G+ + V A+ Q ++V+ G LPG + V N L+AA L Sbjct: 270 RAVTVSASGRPADWRAEDVRAVEAGAQEFVAVDPAGVHHGLRIALPGHYNVANCLLAAAL 329 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTI 379 A+ + L + VPGR E V RG VDYAH +L +L+ +R Sbjct: 330 LDAVDVSPEQAAPGL-RTATVPGRLEAV---DRGQDFLALVDYAHKPGALRAVLETLRGQ 385 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 +GRI VVFG GG+RD GKR MG++A +LAD+ +VTDDNPR EDP IRA I+ G Sbjct: 386 GTGRIAVVFGAGGNRDAGKREPMGRVAAELADLVVVTDDNPRDEDPATIRAAIMAGARAA 445 Query: 439 -----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E G+R EAI A+ DV++VAGKGHET Sbjct: 446 GGGADVVEVGDRREAIAHAVRWARSGDVVLVAGKGHET 483 >gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC 49176] Length = 506 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 151/484 (31%), Positives = 234/484 (48%), Gaps = 32/484 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR+I+ G F+ I G++ DGHLF+ A GA + S + D + I Sbjct: 38 IKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGAGLFIASK--DIADKAGDI--- 92 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ V +T K ++L ++ LYGK E + V TGT+GK++ + + I + L + I Sbjct: 93 -PVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTSYLINHIFETMNLKTGLI 151 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I + TTP L L ++++ +E SSH L R+ G Sbjct: 152 GTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEVSSHALALDRVIGCDFDC 211 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAH 261 FTNL +H+D H+T Y + K LF +L K A++ DD YS+E +AH Sbjct: 212 AVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLKTAVLNIDDKYSEEY--KAH 269 Query: 262 NAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V++ G K + K+ K + + G + L G F VYN L A Sbjct: 270 TPA-EVITYGIDDKTADFYADKIFFDDWKMRFDLHFLGDVYKVETNLVGLFNVYNVLAAI 328 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A GI +E L+ V GR E V T+ + +I +D+AHT + L +L+ + + Sbjct: 329 CTAFAKGIAVRDAIEALKSFSGVSGRMETVHTD-KNYKIIIDFAHTPDGLMKVLETLNKV 387 Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 RII + G GG+RD RP +G+IAL+ +D + T DNPR+E E I+ G+ Sbjct: 388 PHNRIITLIGHSGGNRDSSMRPDLGRIALENSDEVVFTADNPRNESVE----HIVEGLVS 443 Query: 439 FIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 K N R EAI A + + D++++AGKG E ++ + S + + ++EI Sbjct: 444 DCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKGAEPYQVIGDEYLPYS-EIETVKEI 502 Query: 493 LGLI 496 LG I Sbjct: 503 LGRI 506 >gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate ligase [Streptomyces venezuelae ATCC 10712] Length = 565 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 239/482 (49%), Gaps = 42/482 (8%) Query: 13 ELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L QL + P R +I+ ++ DSR ++ G ++ A+ G + G F+ A A Sbjct: 58 DLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFV-AQAAGLGAAA 116 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129 +++ + +AT P+LVV+N R + A+ +YG+ ++L +TGTSGK++ Sbjct: 117 ILTDPTGAERAAAT---GLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTT 173 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185 A V+ + +G + +G T+ D R+ TTP L + + +GV V Sbjct: 174 AYLVEGGLRGTGHHTGLVG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAV 230 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244 ++E SSH L R+DG F NL +H+++H + YF AK LF P+ S Sbjct: 231 AMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLF---TPERSRLG 287 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDF 300 ++ DDAY + ++ A VL+ +G+ + V H+ + G+ Sbjct: 288 VVNLDDAYGRRLVGEAT---VPVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERI 344 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359 PLPG F V N L A A G+D E + + VPGR E V G+ Y Sbjct: 345 SATAPLPGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERV----EAGQPYL 400 Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR MG A LAD A++T Sbjct: 401 AVVDYAHKTDAVESVLRSLREVTEGRLHVVIGCGGDRDTTKRGPMGAAAARLADTAVLTS 460 Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468 DNPRSEDP I ++ G +P E+G + AI A+ D ++VAGKG Sbjct: 461 DNPRSEDPLTILTAMLAGAAEVPAE-ERGEVLVLADRAAAIAAAVARARPGDTVLVAGKG 519 Query: 469 HE 470 HE Sbjct: 520 HE 521 >gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus anaerobius 653-L] Length = 497 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 154/490 (31%), Positives = 234/490 (47%), Gaps = 45/490 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ KD + N I Q + +I+++ DSR IFVAI G DGH +I Sbjct: 1 MKLKDLL-KDIEYISN---IKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYI 56 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 A +G+ +++ ++D + I +V ++R+ LS ++ + + + ++ Sbjct: 57 KGAYDKGSRVFIINHDLEIEDDAIKI-------IVPDSRRVLSRMSAIFFSEPTKKLKVV 109 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 +TGT GK++++++++ + +SG+++ IG + A+ TTP L K + + Sbjct: 110 GITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEM 169 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235 GV V++E SS GL R+D I G +TNL DHI H T + Y K RLF Sbjct: 170 LDAGVECVAMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFG 229 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 L K II DD ++ ++ A C G I + N + S Sbjct: 230 --LCK--YGIINVDDENAQYMVDHAKCPTC--------GFSIDKESNIKAGNIELTRSSA 277 Query: 296 E-GKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 G DFD+ PGEF +YNAL G+C GID +LE L V G Sbjct: 278 SLGVDFDYKLKDQDTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAKV-DG 336 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + + +DYAH SLE +L + R+I V+G G R +R +G Sbjct: 337 RVEVIPVLDNA-TVILDYAHNGLSLENVLDTLLKYDHNRMICVYGSIGGRAAIRRKELGD 395 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQD 460 +A L D++I+T DNP EDP KI EI G + +R EAI A+EM D Sbjct: 396 VAARLCDVSIITTDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGD 455 Query: 461 VLVVAGKGHE 470 +++V GKGHE Sbjct: 456 MVLVTGKGHE 465 >gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7805] Length = 499 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 227/469 (48%), Gaps = 29/469 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G +F+ + G + DG F PQA+A GA A+++ + A + Sbjct: 22 VTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAAAVLIGEQAAASHPPAF--GD 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQ 146 +++ D + AS + + P L + G +G + + ++ + Q G + Sbjct: 80 AVLVLPDPVSVWAGELASAFW-QQPSTRLGLIGVTGTNGKTTTTHLIEHLSQACGQPAAL 138 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHVSVEASSHGLDQHRLDGI 202 G T+ + + LT +A L ++ G ++E SSH LDQHR+ G Sbjct: 139 FG---TLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAMEVSSHALDQHRVAGC 195 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAYSKEVMKRA 260 + FTNL +DH+DYH + +AYF AK RLF L E P A++ DD + +++ R Sbjct: 196 RFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRAVVNTDDPWGRQLADRL 255 Query: 261 HNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 C S+ L+ A + VT EG+ F PL G F + N + A Sbjct: 256 GER-CWSSSLETHADLTMGDLRMTSAGVDGLLVTPLGEGR---FHSPLVGRFNLMNLMQA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMIL 373 G + G+ L+L + VPGR E V + VDYAHT + L L Sbjct: 312 VGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPSVIVDYAHTPDGLRNAL 371 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R T GR++ +FGCGGDRD+GKRP M IA LAD ++T DNPR+E+P +I +I+ Sbjct: 372 LASRPFTKGRLVCLFGCGGDRDRGKRPQMASIAASLADRVVITSDNPRTENPNQILEDIV 431 Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 G+P E NR AI AI D+L++AGKGHE I+ G+ Sbjct: 432 VGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKGHEDYQILDIGK 480 >gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 526 Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 228/465 (49%), Gaps = 23/465 (4%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLS 103 IF A+ G+++ G F A GA A++ ++ D R P L+VD+ R+ L Sbjct: 59 IFAAVPGSRKHGAEFADTDRAAGALAVLTDRDGATILDRKGDTR---PRLIVDDVREVLG 115 Query: 104 LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDN 160 + +S +YG ++ + VTGTSGK++ + +++ +G IG T T I Sbjct: 116 VASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPT 175 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 +LTTP L K + GVTHV +E SSH L R+ G +FTNL +DH+D+H Sbjct: 176 KLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFH 235 Query: 221 QTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 T + YF+AK F P + ++ DD + + + A NA V + G + F Sbjct: 236 DTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWGTRMAEVAGNAQT-VATTGKRADFTAG 294 Query: 280 KKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 +Q T++V + + LPG F V NA +A + G+D + + Sbjct: 295 LVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ 354 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 + VPGR E + + VDYAH ++ +L +RT GR+ VV G GGDRD K Sbjct: 355 V-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATK 412 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK---------GNRIEA 448 R MG+++ AD+ IVTDDNPRSE P IRA ++ G G E G+R EA Sbjct: 413 RAPMGELSARRADLVIVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEA 472 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IR IE D +VVAGKGHE ++ G D + +RE L Sbjct: 473 IRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHHFDDREQVREAL 516 >gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio fibrisolvens 16/4] Length = 490 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 229/461 (49%), Gaps = 37/461 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I+ + DSR ++ +FV I G D H FIP I +GA AI++ D I Sbjct: 20 DKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFIPDVIEKGATAIIIEKDVEPVDGITYI 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 + V N+R+ L++ ++ +G HP L G +G + V+ I +++G+ Sbjct: 80 K-------VANSRQALAILSAAYFG-HPAKELKTIGITGTKGKTTTTYMVKSILEKAGIK 131 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + IG TI S + R+ TTP + + + G+ V +E SS L HR+ Sbjct: 132 TGLIG---TIESIVGEERIPAVNTTPESYRVQELFRQMVDAGLDAVVMEVSSQALMLHRV 188 Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G G FTNL DHI + H+ + Y + K LF++ I+ D+ E + Sbjct: 189 SGFTFDIGVFTNLEPDHIGENEHKDFEDYMHCKSLLFQQ-----CKVGIFNGDSEHIEGI 243 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGK-DFDFLFPLPGEFQVY 313 + H C V+ GY + + + N+ V + GK D +PG F VY Sbjct: 244 LKGHT--CDVIKYGYGKDNDLIAENVELLNENGALGVRYHITGKEDMTVEVNVPGTFSVY 301 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N+L A +C + + L +HV GR E V +S+ + +DYAH + +LE +L Sbjct: 302 NSLTAVAICKQFNVAEDKIKSALMNVHV-KGRIELVPVSSKF-TVMIDYAHNAMALESLL 359 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++ GR++ +FGCGG+R + +R MG+++ LAD+ +VT DNPR+E+P I +I+ Sbjct: 360 TTLKAYEPGRLVCLFGCGGNRAKSRRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDIL 419 Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ ++ +R EAIR + + D++V+AGKGHE Sbjct: 420 IGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKGHE 460 >gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum infernorum V4] Length = 504 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 149/484 (30%), Positives = 237/484 (48%), Gaps = 30/484 (6%) Query: 1 MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 +KL++L+Y P E++ + +I +S DSR + G +F A G K DGH + Sbjct: 12 VKLKNLLYALEPLEVVGSVDC--------EITSISYDSRKVSEGSMFFAWKGQKTDGHCY 63 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117 I +AI + A AIV S L + L V + R+ L AS YG + ++ Sbjct: 64 IGEAIEKRARAIVCSEIPRLY-----VSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSL 118 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALS 175 + VTGT+GK++ + + + ++ + IG T S +R T P L L Sbjct: 119 VGVTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVCYDTTESCIPSSR-TCPEGSDLQYMLY 177 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G VE SSH LDQ R++G G +TN +DH+DYH T + Y +K Sbjct: 178 RMVQAGCRAAVVEVSSHALDQGRIEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIA 237 Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289 + + ++ DD + + ++ R+++V +G+ K +I + Sbjct: 238 YIRGGKEGDGGVVLNLDDPQWRLLAEKLRKK-MRIVTVSSEGRKEADLKAGSISCDRFST 296 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + GK F L G F V NAL++ G + +GI + LE VPGR E Sbjct: 297 KFVLEWAGKVFKVKSSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKY 356 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 + G + +DYAH+ ++L +L ++ R+I+V GCGGDRD+ KRP M K+A + Sbjct: 357 YSKD-GLLVVIDYAHSEDALSKLLHTLKCFQPKRLILVVGCGGDRDRLKRPRMAKVASEN 415 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAG 466 ADI T DNPRSE PE+I ++ G+ + +R EAI+ A+ + + D++ +AG Sbjct: 416 ADIVFFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAG 475 Query: 467 KGHE 470 KGHE Sbjct: 476 KGHE 479 >gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Corynebacterium efficiens YS-314] Length = 509 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 156/465 (33%), Positives = 228/465 (49%), Gaps = 23/465 (4%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPILVVDNTRKFLS 103 IF A+ G+++ G F A GA A++ ++ D R P L+VD+ R+ L Sbjct: 42 IFAAVPGSRKHGAEFADTDRAAGALAVLTDRDGATILDRKGDTR---PRLIVDDVREVLG 98 Query: 104 LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDN 160 + +S +YG ++ + VTGTSGK++ + +++ +G IG T T I Sbjct: 99 VASSSVYGDPSRDLVLIGVTGTSGKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPT 158 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 +LTTP L K + GVTHV +E SSH L R+ G +FTNL +DH+D+H Sbjct: 159 KLTTPEAPTLQKLFYRMRQHGVTHVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFH 218 Query: 221 QTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 T + YF+AK F P + ++ DD + + + A NA V + G + F Sbjct: 219 DTMEEYFDAKALFFRAGSPLAADHQVVCIDDEWGTRMAEVAGNAQT-VATTGKRADFTAG 277 Query: 280 KKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 +Q T++V + + LPG F V NA +A + G+D + + Sbjct: 278 LVTVKETGEQSFTVTVPDHGEVPVTLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ 337 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 + VPGR E + + VDYAH ++ +L +RT GR+ VV G GGDRD K Sbjct: 338 V-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATK 395 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEK---------GNRIEA 448 R MG+++ AD+ IVTDDNPRSE P IRA ++ G G E G+R EA Sbjct: 396 RAPMGELSARRADLVIVTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEA 455 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 IR IE D +VVAGKGHE ++ G D + +RE L Sbjct: 456 IRALIEWAGPGDGIVVAGKGHEVGQLIA-GVTHHFDDREQVREAL 499 >gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha JMP134] gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha JMP134] Length = 520 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 159/501 (31%), Positives = 231/501 (46%), Gaps = 36/501 (7%) Query: 23 MQWRERKI---NEVSSDSRHIQAGWIFVA-IVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + W K+ ++ D+R + G +F+A ++GN+ P A + Y Sbjct: 19 LAWLRTKVPASARLTGDTRRLARGDVFLAYVLGNERLSTDGRPHIAQA-IAAGAGAILYE 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQ 135 F T P L +++ + A+ YG +P +AVTG T+GK+S + ++ + Sbjct: 78 ADGFDWTFGDTVPHLALNSLHQLAGPIAAGWYG-NPARGVAVTGMTGTNGKTSCSQWLAR 136 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + Q +G IG T Q TTP + L +L+ L G V++E SSHGL Sbjct: 137 LLQATGTPCATIGTLGTGFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGL 196 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +Q R+ G TNL +DH+DYH T Y AK RLF A+I DD + Sbjct: 197 EQERVAGTHFSVAVLTNLTQDHLDYHGTMAEYEAAKARLFR--WDGLRTAVINRDDGMGR 254 Query: 255 E-------------VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 V++ + R G +G+++ V A I D Sbjct: 255 RLLASNGAAIAAPHVIEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSAD 314 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIY 359 P+ G F V N L G +A G+ L L L V GR E G ++ G Sbjct: 315 VATPMIGAFNVSNLLAVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAV 374 Query: 360 VDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++LE L+ +R + +GR+ VFGCGGDRD KRP+MG +A LAD ++T Sbjct: 375 VDYAHTPDALEKTLEALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLADEIVLT 434 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETV 472 DNPRSEDP+ I I G+ +G +IE AI AI+ DV++VAGKGHE Sbjct: 435 SDNPRSEDPQDILDAIADGMADRA-RGRQIEDRAAAILYAIKHAAGADVVLVAGKGHEAT 493 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 +G K+ D + +R L Sbjct: 494 Q-EAHGRKRPFSDREHVRLAL 513 >gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 483 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 152/473 (32%), Positives = 231/473 (48%), Gaps = 29/473 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R ++ G ++V + DG F+ QA A GA A ++ S+ D + P+ Sbjct: 26 IETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESS----DEDVHGGQDHPV 81 Query: 93 LVVDNTRKFLSLFASRLY----GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 R L + R Y G P I+ VTGT+GKSSV + ++ + + +G Sbjct: 82 WQSPKARTLLGMALRRWYRWDEGLAPV-IVGVTGTNGKSSVTRLIAELAPQPAMIIGTLG 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + +Q N TTP P+ L + ++ L QG +++E SSH L R+ + A Sbjct: 141 HGRVDALISQAN--TTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAV 198 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL RDH+D+H Y +K RLF+ P A++ DDA++ ++ A R L Sbjct: 199 FTNLSRDHLDFHGDMARYGASKTRLFQT--PGLRLAVLNGDDAFTGQIAA-AMAPEVRQL 255 Query: 269 SVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G YQ +H + + + PL G V N L A L Sbjct: 256 RFGVGSGDYQAVALHPGASGTL-----LDLRTPAGSRRIRSPLIGNSNVQNLLAA--LAT 308 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A G+ + + L + GR++ + ++ +DYAHT ++L +L ++R + G Sbjct: 309 AEGMGWPVSDAAIAGLDLPEGRYQRLAPVPGKAQVMIDYAHTPDALRRVLTDLREVAKGA 368 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE 441 + VVFGCGGDRD+GKRP MG+IA LAD I+TDDNPRSE PE I +I+ G+ PG Sbjct: 369 VTVVFGCGGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQAT 428 Query: 442 K-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +R AIR AI D +++AGKGHE + + + D D+ E L Sbjct: 429 VIHDRAAAIRAAIAASRAGDWVLIAGKGHERTQEIMGQRQPVPQDRDVATEAL 481 >gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate ligase [Spirochaeta coccoides DSM 17374] Length = 535 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 156/506 (30%), Positives = 239/506 (47%), Gaps = 51/506 (10%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 FP+ + +I + DSR G I+ A G EDG F+ A+ +GA A+V Sbjct: 29 FPLP--DIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDFMDNALEKGAAAVVTDR----- 81 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138 + P +VV+ R+ +L +G ++ VTGT GKS+ ++ Q+ + Sbjct: 82 -LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASALKVIGVTGTDGKSTTIEYLWQLLR 140 Query: 139 RSGLSSFQIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 G+ + G ST+S + R +TP L LS G++ V +E +SH Sbjct: 141 GQGV---RAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHSFLSSCRDHGLSIVILETTSH 197 Query: 193 GLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 L RL GI +T + +H+++H + + Y +AK+ L LLP SP +I D+ Sbjct: 198 ALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAKLNLARRLLPG-SPLVIPHDN 256 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFL-- 303 A ++MK A A + +V + +K I N ++ +V G + F F Sbjct: 257 ARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCISATVLGMEPEQLAFTFAIN 316 Query: 304 ---------FPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 FP P F + NAL AA + + I I ++ EKL V GR V NS Sbjct: 317 DKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIAQFEKLSPVRGRAIPV-PNS 375 Query: 354 RGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G + +D+AHT+++ +++ I R I VVFG G+RD KR MG A Sbjct: 376 LGVTVLIDFAHTADAFAHVMEEISRVHPKADITVVFGAAGERDTTKRAPMGAQAARWCSR 435 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAIRTAIEMLNKQDVLVVA 465 I+TD++PR+E E IR +I GIP +++ +R AIR A+ LN+ DVL++ Sbjct: 436 IIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTILRIADRKRAIREAVANLNRGDVLLLL 495 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491 GKGHET NG K + D +RE Sbjct: 496 GKGHETTIEYENGRK---IPWDEMRE 518 >gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Actinomyces sp. oral taxon 180 str. F0310] Length = 539 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 141/466 (30%), Positives = 219/466 (46%), Gaps = 39/466 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ S + GWIFVAI G + G F AI GA I+ + F R Sbjct: 58 VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFER--RLG 115 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ-ICQR------S 140 P++ V N R + L +Y + +AVTGT+GK++ + ++ + R Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G +GP S + R T +P+ +LA Y V +E S+H L + Sbjct: 176 GTVETSVGPVSF-----EAVRTTAEAPVVARFLAATDQYHCGAAV----IELSAHALSLN 226 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEV 256 R+DGI +FTNL DH+DY+ + YF AK LF P+ S ++ DD + + + Sbjct: 227 RVDGIVFDVAAFTNLQHDHLDYYGDMETYFAAKALLF---TPEHSRRGVVCVDDEWGRRL 283 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 A V ++ ++ ++ V +I +S +G P+ G+ V Sbjct: 284 ADHATVPVTTVSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQ 343 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMI 372 N VA +++G+ + +E +PGR E V T + VDYAHT +LE Sbjct: 344 NTAVAIVSAVSLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWT 403 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L++ R +T+GR+++VFG GDRD KR + IA AD+ VTD+NPRSEDP+ IR + Sbjct: 404 LRSTRELTAGRVVIVFGTDGDRDASKREELAAIAAREADVLWVTDENPRSEDPQSIRDYL 463 Query: 433 IHGI----PGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + GI P + R +A+R AI D +++ GKG E Sbjct: 464 LRGIASARPDMHDVHEVTTCRRDAVRQAILDARAADTVIITGKGAE 509 >gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sviceus ATCC 29083] Length = 506 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 160/482 (33%), Positives = 244/482 (50%), Gaps = 45/482 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +QL P Q + ++ ++ DSR ++ G ++ A+ G + G F+ QA+ GA A V Sbjct: 19 ELADQLGAEPPQ-KAAQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVA-V 76 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 ++ + +AT P+LVV++ R + A+ +YG ++L +TGTSGK++ A Sbjct: 77 LTDPTGAERAAAT---GLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTA 133 Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185 V+ GL + G T+ D R+ TTP L + + +GV V Sbjct: 134 YLVE-----GGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAV 188 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244 ++E SSH L R+DG G FTNL +H+++H + YF AK +LF P+ S Sbjct: 189 AMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPERSRLG 245 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFL 303 ++ DD Y + ++K A V++ +G + + T +V G + + Sbjct: 246 VVNLDDEYGRRLVKEAT---VPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERI 302 Query: 304 F---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359 PLPG F V N L A A G+D + + + VPGR E V G+ Y Sbjct: 303 SARSPLPGPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYL 358 Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH ++++E +LK +R +T G++ +V GCGGDRD KR MG A LAD A++T Sbjct: 359 AVVDYAHKTDAVESVLKALRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTS 418 Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKG 468 DNPRSEDP I A ++ G +P E+G +R AI A+ D ++VAGKG Sbjct: 419 DNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477 Query: 469 HE 470 HE Sbjct: 478 HE 479 >gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552] Length = 483 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 244/476 (51%), Gaps = 26/476 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + KI + SDSR+++ IF I G DGH +I AI QGA+ ++V S L+ + I Sbjct: 13 DMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAK-VIVHSKELLEKKNGII 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V+NT + L+ S ++ +P N I+ VTG+SGK+ VAS ++ R + Sbjct: 72 -----YILVENTLEELNR-VSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYCNT 125 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG S + F +D TTP +YL + L ++ GV V++EASSHGL R+D + Sbjct: 126 GY-IGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDSV 184 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G +H+D+H T++ Y AK +LFE + P ++ +DD + ++ ++ Sbjct: 185 NFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKP-SGWVVLNSDD---ENFLRIKNS 240 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++L+ G + + K + + +S +G + P+ +F +YN L Sbjct: 241 TKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVCT 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379 IA+G D +VL+ ++++ V GR E + + + +DY N+ E I + + ++ Sbjct: 301 LIAMGCDEKMVLQAVKEVKPVEGRMELIKA-KQNFSVIIDYCQHINNYEQIFEFVDSVRQ 359 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHG 435 GR+I V G G R+ R +GK+A D I+T + R E+ + I+AEI+ Sbjct: 360 NKGRLIAVLGAPGKRNYKMRREIGKVANKYLDHVILTQLDDRGENVYDICKTIQAEIV-D 418 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I I ++ AI AIE+ K D++++ GKGHE + G D I++E Sbjct: 419 ISSVIIPSRQV-AIEQAIEIACKDDIILILGKGHEKFISLEVGHVDYPGDSTIVKE 473 >gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila abortus S26/3] gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Chlamydophila abortus S26/3] Length = 483 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 149/496 (30%), Positives = 245/496 (49%), Gaps = 57/496 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M L++L++ ++ ++S ++ ++ DSR++ G IF+A G DG+ F Sbjct: 1 MNLKELLHNTKAKIYGKIS-------SVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFS 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 A+ GA A+ S I S+ P L D A++ YG HP + Sbjct: 54 HLAVENGAIAVASSIYNPFLPVVQIISSDLPRLEAD--------LAAKYYG-HPSQKLCV 104 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK++V+ ++ + + IG I +S QD TTP L K L+ Sbjct: 105 VGITGTNGKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDG-YTTPESCLLQKYLA 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + ++ +E SS GL +RL + G TNL DH+D+H + + Y AK++LF Sbjct: 164 KMVKSHLSAAVMEVSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLF- 222 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +LP A++ D + + ++ + ++ G + A + V S Sbjct: 223 SMLPSSGLAVVNNDLCDAAQFIEATQ---AQPITYGIEQH--------ADYQASHVRFSP 271 Query: 296 EGKDFDFLF---------PLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGR 345 G DFD L+ PL G+ +YN L A + + D ++ + + GR Sbjct: 272 FGTDFDLLYKGETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMG 403 E + + IY+DYAHT ++L+ + + ++ + GR+IVVFGCGGDRDQ KR IM Sbjct: 332 LEPIFSGP--CPIYIDYAHTPDALDNVCQTLQALLPQDGRLIVVFGCGGDRDQSKRKIMA 389 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNK 458 ++ ++ A+VT DNPR EDPEKI EI GF+++ +R +AI A+ + + Sbjct: 390 QV-VEKYGFAVVTTDNPRGEDPEKIINEI---CSGFLKRNFSIEIDRKQAITYALSIASD 445 Query: 459 QDVLVVAGKGHETVHI 474 +D+++VAGKGHET I Sbjct: 446 RDIVLVAGKGHETYQI 461 >gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 495 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 141/464 (30%), Positives = 231/464 (49%), Gaps = 31/464 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + +I +S S + G +FVAI G DG +I AI +GA IV S Sbjct: 20 LPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERGASLIVTES----- 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138 D +A R N P + VDN R+ LSL S Y ++ ++ +TGT+GK++ A F+Q + + Sbjct: 75 DLTA--RENVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTTALFLQHLLK 132 Query: 139 RSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G G + I+ +++LTTPS + +L++ S+ V V +E SS GL Q+ Sbjct: 133 KAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQASLAW-SNDDV--VVIETSSQGLHQY 189 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ G++ FTNL DH+DY++T +AY+ AK LF L+ + A+I + + + Sbjct: 190 RMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLF-SLMKADGKAVINSYTMWGNRLA 248 Query: 258 KRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQV 312 K G +VL+V G + A+ V + +G + + PL G + Sbjct: 249 KELAANGKQVLTVDTKKGATSYVLDKTTDTAV-----VAFNGQGGQIEEIEAPLSGVYNQ 303 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N ++A + + +G+D+ E + + GR E+ + G + VDYAHT +++E + Sbjct: 304 ENLILATTVMVDLGLDAGNTNEAIADFAGIAGRLEYYPL-ADGNEMVVDYAHTPDAIEAL 362 Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN----PRSEDPEK 427 L + + II +FG G RD K P M + AD+ I+T D+ P+ EK Sbjct: 363 LTTLNAQYPNHEIIHIFGFRGQRDTKKFPQMVSASQTGADLTILTTDDLNGVPKQVMAEK 422 Query: 428 IRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +G+ +R+EA+ A+EM LV+ GKGHE Sbjct: 423 YLEYVTQYGLDSMAMALDRVEAVELALEMSPNPVFLVLTGKGHE 466 >gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae DSM 11293] Length = 504 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 151/495 (30%), Positives = 224/495 (45%), Gaps = 48/495 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S DSR G ++ A+ G DGH F+ QAIA GA A++ SL Sbjct: 25 ISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGARAVIHQVPLSL------YHPE 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSS-- 144 L V N+R +S A+ Y HP +L VTGT GKSS SF+ Q+ GL Sbjct: 79 IAYLQVTNSRISMSPVAAAFY-DHPSRVLKVIGVTGTDGKSSTVSFLHQLLTGMGLKCGF 137 Query: 145 -----FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QH 197 F G S + F Q +TP + K L + G +H +E++SHGL + Sbjct: 138 LSTVQFNTGGESVKNHFRQ----STPEATEIHKTLRAMVEAGCSHAVIESTSHGLSPKNN 193 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 RL I A TN+ +H+++H T + Y + K LF A+I DD Sbjct: 194 RLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAVINIDDKNHNLFA 253 Query: 258 KRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 A +GCR +S G Q + + T+ + + G F V Sbjct: 254 GTA--SGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPKGEARVDLNVAGRFNVD 311 Query: 314 NALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A A +C G++ + L V GR V + ++ VDYAHT + + Sbjct: 312 NILAASAAVCELEGVEPKTLEPLFPGLKAVKGRMVPV-DEGQAFQVIVDYAHTPGAFRRL 370 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 IR + GR+ +F G+RD KRP++G IA + D+ ++ D++PR E+P + E+ Sbjct: 371 FPAIRPLVRGRLFALFSSAGERDLEKRPVLGSIADEYCDVIVLADEDPRGENPMALLEEV 430 Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG-----E 479 G IE NR EA+R A M+ K D +++ GKGHE I NG E Sbjct: 431 ASGCRNKTKGKSLFLIE--NRKEAMRHAFSMMKKDDCILLLGKGHEGSIIYANGPVPWDE 488 Query: 480 KKMSVDCDIIREILG 494 ++M+ ++RE+ G Sbjct: 489 EEMAR--ILLRELTG 501 >gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC 17931] Length = 572 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 156/515 (30%), Positives = 246/515 (47%), Gaps = 57/515 (11%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E + + Q E + +S DSR ++ ++VA+ G K G F +A+ A AI+ Sbjct: 42 EALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101 Query: 73 VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 +A A + +LV D+ R + A+ +YG N AVTGT+GK++ Sbjct: 102 TDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYAVTGTNGKTT 161 Query: 129 VASFVQQICQ-----RSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 ++ + + ++GL + QI + + + LTTP +++ L+ + GV Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQI----LVDGVSVPSALTTPESVHVHSLLAIMGECGV 217 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +H ++E SSH +D HR+DG+ FTNL +DH+D H T Q YF++K +LF + Sbjct: 218 SHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTE 275 Query: 243 PAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298 A+I ADD + +++++ A G V V G + L +V A I+VE Sbjct: 276 RAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYG--MGLAEVPAEFGPLDWAVINVERD 333 Query: 299 DFDFLFP--------------LPGEFQVYNALVAAGLCIAIG-------IDSALVLEHLE 337 F LP +F V NA +AA L + IG I + + Sbjct: 334 GLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAA-LMVYIGASEEERIILRPALADGTA 392 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +VPGR + + S VD+AH + L L+ + GR+I+VFG G+RD Sbjct: 393 LTPIVPGRMQLI---SLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHL 449 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE---------- 447 KRP+MG+IA ADI IVTDD+P EDP IR ++ G +G R Sbjct: 450 KRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREV 509 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 AI AIE+ + +D +++AG+GHET V + ++ Sbjct: 510 AIARAIELADARDAILIAGRGHETAQDVAGTDVQL 544 >gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 518 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 152/482 (31%), Positives = 245/482 (50%), Gaps = 34/482 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIR 87 ++ EV DSR G +FV + G+ D H F+ + IA+G EAIVV S+ I Sbjct: 45 EVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVIAEGTEAIVVEEESSMLPVDLREIY 104 Query: 88 SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V ++R+ L+ ++ +G ++AVTGT GK++ A ++ I + +G S Sbjct: 105 EGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVTGTKGKTTTAHMIRSILESAGESCG 164 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T + ++ + TTP L ++ +G +V +EASS G +R D I Sbjct: 165 LIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADRGCGYVVMEASSQGFKLYRTDAIDF 224 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTN+ DHI + H+ + Y K R+F + +I D Y++E++ Sbjct: 225 DYGIFTNIEPDHIGPNEHKDFEEYKYYKSRIFRQ----SRVGLINRDSPYAEELIA---G 277 Query: 263 AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVY 313 A CR+ G + + + A+++ V G +F D LPG++ VY Sbjct: 278 AKCRMYCFGIDKSADFMAEGIQAVNSPDFV-----GSEFQVIGMAKLDVRLNLPGKYNVY 332 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A +C IGI ++ +L+ L +L V GR E N + VDYAH + +E +L Sbjct: 333 NAMAAISVCSLIGIRNSAILKAL-RLIRVNGRMELAFKNDTMS-VIVDYAHNAMGMENLL 390 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R R++VVFGCGG+R + +R MG+ A LAD +++T DN R E E I ++I Sbjct: 391 ETLREYHPKRLVVVFGCGGNRSKERRYGMGETAARLADFSVLTADNSRFERTEDIISDIK 450 Query: 434 HG-IP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 +P + E +R EAI A++ K D++ V GKGHE + V NG + +D ++I Sbjct: 451 SRLVPLGGRYAEIPDRREAIEYAMKNAEKGDIIAVIGKGHEDYNEV-NGARTHFLDREVI 509 Query: 490 RE 491 E Sbjct: 510 EE 511 >gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium saccharolyticum WM1] Length = 491 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 151/478 (31%), Positives = 225/478 (47%), Gaps = 37/478 (7%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E + L+ +Q + ++ EV DSR + G +FV + G + D H FIP+ + G + Sbjct: 3 FKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAGVQ 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 +VV L D ++V N R+ L+L ++ +G E + + VTGT GK+ Sbjct: 63 ILVVERKTELPD-------GVTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + ++ + + G IG T I TTP L +A +++ G ++ Sbjct: 116 TTTHMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMV 175 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPA 244 +E SS HR+DGI G FTN+ DHI D H + Y K R+F Sbjct: 176 MEVSSQAFKMHRVDGISFDYGLFTNISPDHIGPDEHADFEEYLYYKSRIFSCC----KVG 231 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302 I+ DD + EV+K +A CR+ S + K K + Q + +E FD Sbjct: 232 IMNGDDEHWAEVVK---DATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLE---FDIKG 285 Query: 303 ------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +PG F V NAL A + +G+ + LE L+V GR E V +S Sbjct: 286 ISQLSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNV-NGRMEIV-YSSETC 343 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VDYAH + S+E +L +R R++ VFGCGG+R + +R MG A LAD I+T Sbjct: 344 TVIVDYAHNAVSMESLLSTLRDYRPKRLVCVFGCGGNRSKDRRITMGDSAGRLADFTIIT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DN R E E I A+I + FIE +R EAIR +I D++ + GKGHE Sbjct: 404 ADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMIAIIGKGHE 461 >gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. C] Length = 564 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 144/461 (31%), Positives = 225/461 (48%), Gaps = 33/461 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ DSR ++ G ++ A+ G + G F A A V++ + +AT Sbjct: 82 QITGITHDSRAVRPGDLYAALPGARLHGADFA-AQAAALGAAAVLTDPEGAERAAAT--- 137 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L V + R + A+ +YG+ E +L +TGTSGK++ A V+ + +G ++ Sbjct: 138 GLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAYLVEGGLRAAGRTTGL 197 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+ D R+ TTP L + + +GV V++E SSH L R+DG Sbjct: 198 VG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGC 254 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 F NL +H+++H + YF AK +LF E + ++ DD Y + + K A Sbjct: 255 VFDVAVFNNLSPEHMEFHTGMEDYFQAKAQLFTER--RARLGVVNLDDEYGRRLAKEASI 312 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G + V + H +T + EG+ PLPG F V N + A Sbjct: 313 PVVTFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPLPGPFNVANTVAAIVT 372 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378 A G+D + + + VPGR E V G+ Y VDYAH ++++E +L+ +R Sbjct: 373 LAAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRALRE 428 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435 +T+G++ +V GCGGDRD KR MG A AD A++T DNPRSEDP KI A + G Sbjct: 429 VTTGKLHIVLGCGGDRDTTKRAPMGAAAARYADTAVLTSDNPRSEDPLKILAAMFEGAVS 488 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHE 470 +P E+G + A + D ++VAGKGHE Sbjct: 489 VPAE-ERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHE 528 >gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Oribacterium sinus F0268] Length = 495 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 154/485 (31%), Positives = 242/485 (49%), Gaps = 40/485 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI-- 86 + + +S DSR +AG +F+ + G+ D H IP+ + +G VV +L D + Sbjct: 22 EFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVEK--NLPDLPKEMQD 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 R + I+ V+N RK L+ ++ Y +P ++ +TGT GK++ AS V+ I +G + Sbjct: 80 REDLCIVQVENGRKALAELSA-FYFSYPSKEMLMIGITGTKGKTTTASMVRAILTEAGYN 138 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T + +++R TTP L + + +G V +EASS G HR DGI Sbjct: 139 CGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVVMEASSQGFKMHRTDGI 198 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTN+ DHI + H+ Y K R+F + ++ D +S+E M+ A Sbjct: 199 LFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIF----TQSKTGLVNLDADFSEEFMENA 254 Query: 261 HNAGCRVLSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 C ++ Q F+ H C H + +D++ LPG + Sbjct: 255 E-CPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGE------EDWEIWNHLPGRYN 307 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLE 370 VYNAL A L +GI +V L K+ V GR E V RGG + VDYAH + ++ Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQV-NGRMEVV--LQRGGYTVLVDYAHNAMGMK 364 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ ++ R+IVVFGCGG+R + +R MG++A ++AD I+T DN R E I + Sbjct: 365 NLLETLKAYKPKRLIVVFGCGGNRAKERRYGMGEVAGEMADFTILTADNSRYEKTMDIIS 424 Query: 431 EIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I + +++ +R EAIR A+E + D++ V GKGHE + V NG VD Sbjct: 425 DIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKGHEEYNEV-NGTFTRFVDR 483 Query: 487 DIIRE 491 ++I E Sbjct: 484 EVILE 488 >gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodoferax ferrireducens T118] gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodoferax ferrireducens T118] Length = 538 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 163/530 (30%), Positives = 239/530 (45%), Gaps = 65/530 (12%) Query: 17 QLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-- 73 Q I + W R R + +DSR +Q G F+A G D F+ A+A GA A +V Sbjct: 5 QTPIEAVAWLRSRVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVER 64 Query: 74 --SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + AY+ S+ + N + L A+ + + + ++LAVTGT+GK+S Sbjct: 65 LGAEAYAF--------SSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTST 116 Query: 130 ASFVQQICQRSGL---------SSFQIGPTST----------ISSFAQD-------NRLT 163 A ++ Q L + IG +++ D LT Sbjct: 117 AWWLAQALSNLKLVTPIPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLT 176 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 TP P+ L +AL +G ++EASS GL + RL+G + FTN +DH+DYH Sbjct: 177 TPDPVLLQQALRRFVDRGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAM 236 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 AY+ K LF+ P A+I DD E+ + V +V + L+ Sbjct: 237 AAYWQVKASLFQ--WPGLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAE-ARLQACD 293 Query: 284 AIHNKQQVTISV-------------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +H+ + +V G+ L G + V N L +G+ A Sbjct: 294 IVHDAPGLRFTVLEHGPDGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLA 353 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVV 387 V+ L VPGR E G + VDYAHT ++L L+ +R + GR+ V Sbjct: 354 AVVASCADLTAVPGRMECWGAPGQP-LAAVDYAHTPDALGKALQALRPLADQRGGRLWCV 412 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444 FGCGGDRD KRP+MG IA AD +VT DNPRSE P+ I ++I+ G+ P + + Sbjct: 413 FGCGGDRDTAKRPLMGAIAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPD 472 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 R AI AI QDVL++AGKGHE V G++ D + +R LG Sbjct: 473 RARAIAQAIAQAAPQDVLLIAGKGHEDYQEVA-GQRLPFSDAEQVRRALG 521 >gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 490 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 155/486 (31%), Positives = 237/486 (48%), Gaps = 38/486 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E +I E+++DSR + G +FV I G DGH +I + +GA A++V Sbjct: 19 KEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGKKGAAAVIVEKDVEAPKHMTV 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGL 142 IR V++TR L+L ++ +G +P L V G +G + V+ I + G Sbjct: 79 IR-------VEDTRYALALASAAYFG-YPAEQLKVIGITGTKGKTTTTYMVKSILEEVG- 129 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++G TI + D + TTP + + + G V +E SS GL HR Sbjct: 130 --HKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKMVDAGCDAVVMEVSSQGLMLHR 187 Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 GI G FTNLG DHI + H+ + Y K LF + I DD Y K+V Sbjct: 188 TAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFRQC----KIGIANVDDPYFKDV 243 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEG-KDFDFLFPLPGEFQV 312 + A C + + G+ K + + + V V G DFD +PG F V Sbjct: 244 FR---EATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVAGLMDFDVEIDIPGTFSV 300 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN+L A +C + S + + L K+ V GR E V + + +DYAH + SLE + Sbjct: 301 YNSLTAIAVCRHFNVPSEKIQKAL-KVAKVKGRIEMVKVSDEF-TLMIDYAHNAMSLESL 358 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+P++I +I Sbjct: 359 LTTLKEYHPKRLVCLFGCGGNRSKTRRYEMGEVSGRLADLTIITSDNPRFEEPQEIIDDI 418 Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 G+ ++E +R EAIR AI DV+V+AGKGHE + G K + D+ Sbjct: 419 KIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKGHEDYQEI-KGVKYAMDERDL 477 Query: 489 IREILG 494 I +IL Sbjct: 478 IADILA 483 >gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme DSM 15981] Length = 498 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 148/487 (30%), Positives = 231/487 (47%), Gaps = 35/487 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++++VS DSR + G +FV + G + D HLFIPQ G IV+ L++ + Sbjct: 20 EVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAGVRVIVIERP--LEELLKAV 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSS 144 +L V + R+ L+L ++ +G ++ V T K + ++ I + +G Sbjct: 78 SPQVTVLRVKDGRRALALLSAARFGYPARKMITVGVTGTKGKTTTTHMIKAILEAAGKKV 137 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T I N TTP L +A + + G ++ +E SS G+ HR DG+ Sbjct: 138 GMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADMVEAGCEYMIMEVSSQGIKMHRTDGLF 197 Query: 204 LIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G FTN+ DHI D H Y K RL + ++ D + + ++K Sbjct: 198 FDYGLFTNISPDHIGPDEHADFGEYLYYKSRL----MTMCKVGLVNRGDEHYEGIIK--- 250 Query: 262 NAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310 +A CR+ S ++ + I + A N V G D +PG F Sbjct: 251 DASCRLYTYCVAEGDGASADFEARNI---RYVAEENFVGTEFDVTGWLSMDVRLGIPGLF 307 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL A LC +G+D + LE + + GR E V T+ R + VDYAH + S+E Sbjct: 308 NVDNALAAMSLCSFMGLDKQRMSHALEHIRI-NGRMEIVHTSKRC-TVLVDYAHNAVSME 365 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L +R R++ VFGCGG+R + +R MG+I +AD+ I+T DN R E PE I A Sbjct: 366 SLLGTLRNYHPKRLVCVFGCGGNRSKDRRYSMGEIGGRMADLCILTADNSRYEKPEDIIA 425 Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I I F+E +R +AI +IE D++ + GKGHE + G + +D Sbjct: 426 DIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMIAIIGKGHEDYQEIC-GVRHHFLDR 484 Query: 487 DIIREIL 493 ++I E + Sbjct: 485 EVIEETV 491 >gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum WAL-14163] Length = 487 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 223/457 (48%), Gaps = 29/457 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++++V DSR AG +FV + G D H FIP I +GA+ +V A T+ Sbjct: 20 DEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKGAKVLVTEEA-------VTV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 +L V N R LSL ++ +G +P + G +G + ++ I + +G Sbjct: 73 PEEITVLRVGNGRNALSLLSAARFG-YPARKMTTIGVTGTKGKTTTTYMIKAILEAAGEK 131 Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG I F N TTP L + + + QG ++ +E SS HR+D Sbjct: 132 TGLIGTNGAIIGSDHFPTMN--TTPESYILQEYFAKMVEQGCRYMVMEVSSQSYLMHRVD 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI F N+ DHI + A F + + LL ++ DD + +E+++ A Sbjct: 190 GIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLLLQNSRVCLVNRDDGHYREIIEGA 247 Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALV 317 A + S+ + F K H+ + +EG D++ +PG F VYNA+ Sbjct: 248 -KAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG-DYESRLRVNVPGLFNVYNAMA 305 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AAG+C +G+ V LE + V GR E V +++ I VDYAH + S+E +L +R Sbjct: 306 AAGVCSCLGLSKERVAHALEHMQV-DGRMEIVYKSAKCTVI-VDYAHNAVSMESLLMTLR 363 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R++VVFGCGG+R + +R MG+I LAD++I+T DN R E I A+I G+ Sbjct: 364 DYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITADNSRFEKTSDILADIKTGLS 423 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 FIE +R EAI ++ + D++ + GKGHE Sbjct: 424 RTEGKFIEIPDRREAIEYSLSHAQEGDIIAIIGKGHE 460 >gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 11379] gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces roseosporus NRRL 15998] Length = 522 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 145/461 (31%), Positives = 229/461 (49%), Gaps = 35/461 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR ++ G ++ A+ G + G F QA GA A V++ + +AT Sbjct: 34 VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVA-VLTDPTGAERAAAT---G 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+LV +N R + A+ +YG+ +L +TGTSGK++ A V+ + +G + I Sbjct: 90 LPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAYLVEGGLRAAGRPTGLI 149 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ D R+ TTP L + + +GV V++E SSH L R+DG Sbjct: 150 G---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCV 206 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHN 262 F NL +H+++H + YF AK +LF P+ S ++ DD Y + ++ + Sbjct: 207 FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSHRGVVNFDDEYGRRLITESGV 263 Query: 263 AGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G+ H + V + + +G+ PLPG F V N L A Sbjct: 264 PVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPLPGPFNVANTLAAIVT 323 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRT 378 G+ + + + + VPGR E V G+ Y VDYAH ++++E +L+++R Sbjct: 324 LAVAGVAPQIAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRSLRK 379 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435 +T G++ +V GCGGDRD KR MG A LAD A++T DNPRSEDP I A ++ G Sbjct: 380 VTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAAMLSGAAE 439 Query: 436 IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 +P E+G+ + AI A+ D ++VAGKGHE Sbjct: 440 VP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 479 >gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1] gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing bacterium SSC/2] gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 485 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 144/481 (29%), Positives = 241/481 (50%), Gaps = 36/481 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ + DSR I+ G +FV I G DGH F+ QA GA A+VV + Sbjct: 22 EISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELGAAAVVVEK-------DVEVPE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 N ++ DNTR L+ ++ +G E + + T K + ++ + + +G + Sbjct: 75 NLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKTTTTYMIRAVLEHAGQKTGL 134 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG TI + D R+ TTP + ++ ++ G+ +V +E SS L HR G Sbjct: 135 IG---TIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVVMEVSSQALMLHRTSGF 191 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + G FTNL DHI + H+ Y + K LF++ I+ DD Y + ++K Sbjct: 192 EFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFKQC----KQGIVNGDDDYVERIIK-- 245 Query: 261 HNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNAL 316 + C + + G + ++ + + I + ++ + K +++ +PG+F VYN+L Sbjct: 246 -DHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEYNVHVDIPGDFTVYNSL 304 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A LC +GI VL L + V GR E + T + +DYAH + SLE +L I Sbjct: 305 AAISLCRHMGIVKEDVLSALNTIQV-KGRLEIIKTPG-DYTLMIDYAHNAMSLESLLTTI 362 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +I +FGCGG+R + +R MG+++ LAD+ +VT DNPR+E+P I +I+ G+ Sbjct: 363 RKYNPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTSDNPRNEEPMDIINDILIGV 422 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 ++ +R EAI+ +E D++++AGKGHE + G K + D+I+EI Sbjct: 423 HKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKGHEDYQEI-KGVKHHMDERDLIQEI 481 Query: 493 L 493 + Sbjct: 482 I 482 >gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 495 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 224/462 (48%), Gaps = 29/462 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ I ++++DSR Q G +FVA G D H F + QG + I+VS I Sbjct: 21 EKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQGCQVIIVSH-------QQEI 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSS 144 + ++V +T + SL A+ LY + ++ VTGT+GK+S+A+ + I ++ G S Sbjct: 74 TGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTSIATMIHHIYRKLGKGS 133 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G I+ TTP + L K ++ + +++E SSHGL RL G+ Sbjct: 134 AYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTLEVSSHGLSLGRLRGVD 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRA 260 F+NL +DH+D+H T +AY +AK LF +L L +E ++ DDA+S+ + A Sbjct: 194 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFVVLNKDDAFSEYL---A 250 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNA 315 V + G + A H + Q T +F P G F V N Sbjct: 251 SVTPFEVFTYGVTND----AQFTAHHINESLQGVQFTFKTPEGEFQVKSPYVGLFNVSNI 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A + GI +++ +E L V GR E + S + +DYAHT++ ++ ++ Sbjct: 307 MAAMIAVWSKGIALNDIVDAVENLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMDKLIDA 365 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ ++I + G G+RD K P MG++A AD I T DNP ++ P+ + E+ G Sbjct: 366 VKPFAKQKLIFLCGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDAPKTLTQELAKG 424 Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +IE +R E IR AI + D +V+A KG E I+ Sbjct: 425 ATHDNYIEFEDRAEGIRHAINIAEPGDTVVLASKGREPYQIM 466 >gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces ghanaensis ATCC 14672] Length = 515 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 159/489 (32%), Positives = 238/489 (48%), Gaps = 50/489 (10%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +QL + P R ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A+ Sbjct: 19 ELADQLGL-PAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVAV- 76 Query: 73 VSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKS 127 L D S R + P LVVD+ R + A +YG ++L +TGTSGK+ Sbjct: 77 ------LTDPSGAERVAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKT 130 Query: 128 SVASFVQQICQRS-----GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178 + A V+ + + G ++G T+ + R+ TTP L + + Sbjct: 131 TTAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMR 190 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 +G V++E SSH L R+DG FTNL +H+++H + YF AK +LF Sbjct: 191 ERGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLF---T 247 Query: 239 PKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTI 293 P+ S ++ DD Y + + K AG V++ +G + + + I Sbjct: 248 PERSRLGVVNVDDEYGRRLAK---EAGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVI 304 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 E + PLPG F V N L A A G+D + + + VPGR E V Sbjct: 305 GPEDQRVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDA-- 362 Query: 354 RGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 G+ Y VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD KR MG A LA Sbjct: 363 --GQPYLAVVDYAHKTDAVESVLRTLRRVTEGRVHVVLGCGGDRDITKRAPMGAAAARLA 420 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDV 461 D A++T DNPRSEDP I A ++ G +P E+G +R AI A+ D Sbjct: 421 DTAVLTSDNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDT 479 Query: 462 LVVAGKGHE 470 ++VAGKGHE Sbjct: 480 VLVAGKGHE 488 >gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 513 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 233/455 (51%), Gaps = 41/455 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ +S I+ G++F+AI G K+DGH++I QAI GA I++ L + P Sbjct: 53 ITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGA--ILIIGENELMNLEV------PY 104 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + RK L A +L+ K P ++ +TGT+GK++++ F++ + ++ G S IG Sbjct: 105 LKVKSARKALGQVA-KLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSSIG- 162 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208 TI + ++ T + AK ++ L V V E SS GL+Q RL+GI+ Sbjct: 163 --TIHNEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYAL 220 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 F NL DH+DYH T + YF K LF++L P AII +DD++ ++++ G ++L Sbjct: 221 FNNLQHDHLDYHNTMEEYFECKALLFQKLKP-NGTAIINSDDSWGLKLIEHLTAEGKKIL 279 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIG 326 +VG Q F +++ I +K+ +SV K+ ++ PLPG +YN +++ +G Sbjct: 280 TVGEQS-FSNVQ----ILSKELNDVSVMHKNMEYSLRTPLPGMHNLYNLSMSSCAVHELG 334 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + V ++ + GRFE + + VDYAHT ++LE+ + + II Sbjct: 335 VPYEKVKPYMSDFTGISGRFELFHLENN-VTVVVDYAHTPDALEIAINTAINNGANHIIT 393 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446 VFG G+RD KR M +I L+D +I+T +K+ + + I+K ++ Sbjct: 394 VFGFAGNRDTSKRKAMLEIVTRLSDSSILTVTELFGSTIDKLYTDYV-----MIQKECQV 448 Query: 447 E-----------AIRTAIEMLNKQDVLVVAGKGHE 470 E AI+ AI+ D +++ GKGHE Sbjct: 449 EDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKGHE 483 >gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. Mg1] Length = 567 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 226/460 (49%), Gaps = 33/460 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR ++ G ++ A+ G K G F QA A GA A++ A + D +A + Sbjct: 86 VTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGA--DRAAA--TG 141 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L V + R + A+ +YG+ E +L +TGTSGK++ A V+ + +G S+ + Sbjct: 142 LPVLAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLV 201 Query: 148 GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G T+ D R+ TTP L + + +GV V++E SSH L R+DG Sbjct: 202 G---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCV 258 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 F NL +H+++H + YF AK RLF E + ++ DD Y + + K A Sbjct: 259 FDVAVFNNLSPEHMEFHSDMEDYFQAKARLFTER--RARLGVVNFDDEYGRRLAKEASIP 316 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G + V H +T + EG+ PLPG F V N + A Sbjct: 317 VVTFSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTL 376 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379 A G+D + + + VPGR E V G+ Y VDYAH ++++E +L+ +R + Sbjct: 377 AAAGLDPQTAADGVAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLRALREV 432 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---I 436 T+G++ +V GCGGDRD KR MG A AD A++T DNPRSEDP I + G + Sbjct: 433 TTGKLHIVLGCGGDRDTTKRAPMGAAAARFADTAVLTSDNPRSEDPLTILGAMFEGAVSV 492 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHE 470 P E+G + A + D ++VAGKGHE Sbjct: 493 P-PAERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHE 531 >gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter arilaitensis Re117] Length = 530 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 232/459 (50%), Gaps = 31/459 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS + + +Q G +F+ I G K G F+ A+A GA A++ +A L+ + + P+ Sbjct: 51 VSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTA-GLEFLGDGL--SIPV 107 Query: 93 LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 VV + RK + A +YG + + VTGT+GK++ ++ I G + IG T Sbjct: 108 AVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDALGEETGLIG-T 166 Query: 151 STISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +S+ Q + LTTP L L+ ++ Q V+ V++E SSH L R+D ++ Sbjct: 167 IEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGRVDSLRFAVSG 226 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 +TNL +DH+D H T YF K +LF + A++ DD Y + + +RA L Sbjct: 227 YTNLTQDHLDLHGTMDEYFETKAQLFTA--ERSERAVVMVDDQYGQRLAERAL-VPTETL 283 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 S+ + + H+ + ++ +G++ LPG F V N +AA + +A Sbjct: 284 SLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGALAAVMVLAS 343 Query: 326 GIDSALVLEHL---EKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 G++ + L + L V VPGR + VG + VD+AH S++L L +IR Sbjct: 344 GVELDTLQRALNAGDPLSVAVPGRMQVVGESPVA---VVDFAHNSDALAKALDSIRPGEQ 400 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR IVVFG G+RD+ KRP MG +A ADI IVTDD+P EDP IR ++ G ++ Sbjct: 401 GRRIVVFGATGERDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAPIREQVASGAQQVLD 460 Query: 442 K----------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 R +A+ A+ + + D ++VAG+GHE Sbjct: 461 TERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAGRGHE 499 >gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus equi ATCC 33707] Length = 501 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 153/499 (30%), Positives = 235/499 (47%), Gaps = 54/499 (10%) Query: 1 MKLQDLIYKDFP----ELINQL-------SIFPMQWRERKINEVSSDSRHIQAGWIFVAI 49 M L+DL P E++++L + P+ R R I V DSR ++ G ++ A+ Sbjct: 1 MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDR-RVITGVCQDSRRVRPGDLYAAL 59 Query: 50 VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109 G + G F +A A+GA A+ L D + I P +VVD+ R L A+ Sbjct: 60 PGRRHHGADFASEATARGAVAM-------LSDRPSDI---VPTVVVDDPRVALGPLAAWA 109 Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPS 166 YG ++ VTGT+GK+S ++ +GL + + G T + TTP Sbjct: 110 YGNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPE 169 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 L ++ +GV V++E SSHGL +HR+DG + G FTNL RDH+DYH +AY Sbjct: 170 ACELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAY 229 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + AK RLFE L + + I DD Y + + S G ++ V A Sbjct: 230 YAAKARLFERDLCERAAVCI--DDDYGRRLAAEVAVPHL-TFSARDPGADVYATTVRAQR 286 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ G+ + G QV NA+ A GID + +E L +PGR Sbjct: 287 WGSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRL 346 Query: 347 EFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 E V G+ + VDY H + + +R++T GRI+VV G G+RD GKR +G Sbjct: 347 ERVDV----GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLG 402 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR------------AEIIHGIPGFIEKGNRIEAIRT 451 A A++ +VTD++ S+D +R AE++ IP +R EAI Sbjct: 403 FTAARYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVV-IP------DRGEAIAV 455 Query: 452 AIEMLNKQDVLVVAGKGHE 470 A+++ D +++AG+GH+ Sbjct: 456 AVDLAGAGDTVLLAGRGHD 474 >gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus haemolyticus JCSC1435] gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Staphylococcus haemolyticus JCSC1435] Length = 494 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 227/465 (48%), Gaps = 41/465 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++++DSR G IFVA G D H F + QGA+ IVV+ QD + + Sbjct: 23 VTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQGAKVIVVNHQ---QDINGDVTQ- 78 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V +T + SL A LY H + VTGT+GK+S+A+ + I + G S + Sbjct: 79 ---VIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSIATMIHLIYRGLGKGSAYL 135 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I+ TTP + L K + + +++E SSHGL RL G++ Sbjct: 136 GTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTMEVSSHGLSLGRLRGVEFDV 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263 F+NL +DH+D+H T +AY +AK LF +L L KE A++ DD +SK + A Sbjct: 196 AIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAVLNNDDDFSKYL---ASVT 252 Query: 264 GCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQV 312 + + G + +F+ + + S++G FDF P+ G+F + Sbjct: 253 PYEIFTYGIDHDAQFM----------AKNIQESLQGVHFDFDTPIGTYSVKTPYVGKFNI 302 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N + A + G ++ +E L V GR E + S + +DYAHT++ + + Sbjct: 303 SNIMAAMIAVWSKGTSMEDIVRVVENLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKL 361 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 + ++ ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ Sbjct: 362 IDAVKPFVKQKLIFLIGMAGERDLTKTPEMGAVAC-RADYVIFTPDNPANDDPKMLTAEL 420 Query: 433 IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G ++E +R E I+ AI++ D +V+A KG E I+ Sbjct: 421 AKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 476 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 138/448 (30%), Positives = 226/448 (50%), Gaps = 27/448 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S D+R ++ W+FV G+ DG F+ +A+ +GA +V+ Q+ Sbjct: 21 RILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGA--VVLCDEPLKQEHVYY-- 76 Query: 88 SNTPILVVDNTRK-FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 TP V+ R+ L L+ L + +++ VTGT+GK+SVAS + Q+ + Q Sbjct: 77 --TP--YVERIRQALLELYYGDLCAR--LHVIGVTGTNGKTSVASIISQLLAMEDCAVLQ 130 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG S + TTP LA G+THV +E SSH +DQ+R+ ++ Sbjct: 131 IGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHVVMEVSSHAIDQNRISFLQFD 190 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264 +TN+ +DH+DYH ++ Y K +L L P+ + IIY D +Y +E++ A + Sbjct: 191 DIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGT--IIYNSDLSYMQELVNLAQHT- 247 Query: 265 CRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +S+G Q L +V + H+ +S + + F L G VYN A + Sbjct: 248 --CISIGMQAAHFPLSEVQLSAHD-----LSFHLQGYAFHARLLGMVNVYNLAEAIVVVH 300 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 G +++ E+L V GR E + G I++DYAHT+++++ +L ++ GR Sbjct: 301 RTGCSYERLVQDCEQLKPVSGRMEVMEVG--GFTIWIDYAHTASAVKELLLFANSVKKGR 358 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEK 442 I+ + GCGG+RD+ KRP M IA +DIA+ T DNPR E I ++ + Sbjct: 359 ILTILGCGGERDRTKRPQMAAIAAAYSDIAVFTSDNPRGESVADILQDMKCESFSNAVVF 418 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NR AI+ I++ D++++AGKG E Sbjct: 419 ENRYFAIKHTIKVAQNSDIIIIAGKGSE 446 >gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum WAL-14673] Length = 487 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 142/457 (31%), Positives = 222/457 (48%), Gaps = 29/457 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++++V DSR AG +FV + G D H FIP I +GA+ +V A T+ Sbjct: 20 DEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKGAKVLVTEEA-------VTV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 +L V N R LSL ++ +G +P + G +G + ++ I + +G Sbjct: 73 PEEITVLRVGNGRNALSLLSAARFG-YPARKMTTIGVTGTKGKTTTTYMIKAILEAAGEK 131 Query: 144 SFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + IG I F N TTP L + + + QG ++ +E SS HR+D Sbjct: 132 TGLIGTNGAIIGSDHFPTMN--TTPESYILQEYFAKMVEQGCRYMVMEVSSQSYLMHRVD 189 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI F N+ DHI + A F + + LL ++ DD + +E+++ A Sbjct: 190 GIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLLLQNSRVCLVNRDDGHFREIIEGA 247 Query: 261 HNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALV 317 A + S+ + F K H+ + +EG D++ +PG F VYNA+ Sbjct: 248 -KAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG-DYESRLRVNVPGLFNVYNAMA 305 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AAG+C +G+ V LE + V GR E V +++ I VDYAH + S+E +L +R Sbjct: 306 AAGVCSCLGLSKERVAHALEHMQV-DGRMEIVYKSAKCTVI-VDYAHNAVSMESLLMTLR 363 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R++VVFGCGG+R + +R MG+I LAD++I+T DN R E I A+I G+ Sbjct: 364 DYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITADNSRFEKTSDILADIKTGLS 423 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 FIE +R EAI ++ D++ + GKGHE Sbjct: 424 RTEGKFIEIPDRREAIEYSLSHAQDGDIIAIIGKGHE 460 >gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris AB-18-032] gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris AB-18-032] Length = 497 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 160/478 (33%), Positives = 231/478 (48%), Gaps = 41/478 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI-------- 64 +L +L++ P + + V+ S + G ++ A+ G + G F+ A Sbjct: 8 DLAARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAAGAVAVL 67 Query: 65 --AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 A GAE +++ Y L P LVV + R L AS +YG E ++ V Sbjct: 68 TDAAGAE---LAAGYGL-----------PTLVVADPRAVLGTLASAVYGDPTEKLTVIGV 113 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179 TGT+GK+S A V+ + +G ++ IG T + D+ TTP L L+ Sbjct: 114 TGTAGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALE 173 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 +GVT V +E SSH L R+ G++ G +TN G DH+D+H YF AK RLF+ Sbjct: 174 RGVTAVVMEVSSHALAMGRVGGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDGRCA 233 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGK 298 E ++ DD K + K A + G + V Q+ T+ +G Sbjct: 234 HE---VLNHDDPALKALFKPAT---ISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGL 287 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D LPG V NAL+A + +A G+D+A + VPGR E VG R Sbjct: 288 VLDAGVALPGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLESVGVAGGV-RG 346 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH ++++ +L +R ++SGR+I V G GGDRD+GKRP MG A AD+ +VTDD Sbjct: 347 VVDYAHKTDAVVAVLAALRELSSGRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDD 406 Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 NPR+EDP IRAE++ G +E R AI A+ DV+ V GKGHE Sbjct: 407 NPRTEDPATIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKGHE 464 >gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Corynebacterium jeikeium K411] Length = 536 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 154/498 (30%), Positives = 230/498 (46%), Gaps = 56/498 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W ++ + S+ ++ G +F A+ G K G F A ++A V + + Q Sbjct: 19 WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF-----AADSKAAAVLTDAAGQRIID 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141 + P +VVDN RK++ A+ +YG HP L G +G S + V++ SG Sbjct: 74 DATTPLPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTSGKTTTSYLVEKALLESG 132 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L IG T T I+ LTTP L L+ + ++GVTH+ +E SSH L R+ Sbjct: 133 LRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVMEVSSHALQLGRVH 192 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258 G+ +FTNL +DH+D+H T + YF AK LFE P A++ +D + + + Sbjct: 193 GVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGTAVVCCEDEWGERMRA 252 Query: 259 RAH----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLF 304 A G G I +V A + +Q + +S+ G ++ D+ Sbjct: 253 IAAKYSSTVALYPQGGNHEAETGSPVWSIASAEV-APNGRQHIRLSIAGGSEPRELDYSI 311 Query: 305 PLPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F N+LVA CI + DS V + L + VPGR + V + Sbjct: 312 GMAGSFNQANSLVALA-CIEAVTGEPLSSDSTAV-QALADVQ-VPGRMQLV-EEGQDFLA 367 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAH +++ +L ++ + RI +V G GG+RD KR IMG+IA +LAD V Sbjct: 368 MVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGRIAAELADAVFV 427 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------------NRIEAIRTAIEMLNKQ 459 TDDNPR E+P IR I G ++K +R EAI A+ Sbjct: 428 TDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEAIAAAVTWARPG 487 Query: 460 DVLVVAGKGHETVHIVTN 477 D +VVAGKGHE +V Sbjct: 488 DAVVVAGKGHEKGQLVAG 505 >gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis W23144] Length = 494 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++++++DSR + G +FVA G D H F + QG +VV+ L + Sbjct: 22 QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKL-------KG 74 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140 N +VV +T + SL A LY H VTGT+GK+S+A+ + I ++ Sbjct: 75 NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + FQ+ T T + TTP + L K + +++E SSHGL RL Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248 Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 A V + G ++ +F+ + + S++G +F+F P Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVRSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F + N + A + G + ++ + +L V GR E + S + +DYAHT Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E IR AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus warneri L37603] Length = 494 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 231/472 (48%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++++ ++++DSR + G IFVA G D H F + QG IVV+ QD + Sbjct: 20 DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNRE---QDLKGEV 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++V +T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 77 TQ----IIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKSS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + +G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S+ Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSE 246 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 + A V + G H + AI+ ++ S++G F+F P Sbjct: 247 YL---ASVTPYEVFTYGID----HDAQFKAINVEE----SLQGVKFEFDTPFGSYQVESP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G+F + N + A + G ++E ++ L V GR E + N I +DYAHT Sbjct: 296 YVGKFNISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNLPIDLI-IDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG +A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVACH-ADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHSNYIEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 465 >gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) [Corynebacterium jeikeium ATCC 43734] Length = 536 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 154/498 (30%), Positives = 230/498 (46%), Gaps = 56/498 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W ++ + S+ ++ G +F A+ G K G F A ++A V + + Q Sbjct: 19 WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF-----AADSKAAAVLTDAAGQRIID 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141 + P +VVDN RK++ A+ +YG HP L G +G S + V++ SG Sbjct: 74 DAPTPLPCIVVDNVRKWMGPVAAEVYG-HPARQLKTIGITGTSGKTTTSYLVEKALLESG 132 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L IG T T I+ LTTP L L+ + ++GVTH+ +E SSH L R+ Sbjct: 133 LRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHLVMEVSSHALQLGRVH 192 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258 G+ +FTNL +DH+D+H T + YF AK LFE P A++ +D + + + Sbjct: 193 GVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGTAVVCCEDEWGERMRA 252 Query: 259 RAH----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLF 304 A G G I +V A + +Q + +S+ G ++ D+ Sbjct: 253 IAAKYSSTVALYPQGGNHEAETGSPVWSIASAEV-APNGRQHIRLSIAGGSEPRELDYSI 311 Query: 305 PLPGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G F N+LVA CI + DS V + L + VPGR + V + Sbjct: 312 GMAGSFNQANSLVALA-CIEAVTGEPLSSDSTAV-QALADVQ-VPGRMQLV-EEGQDFLA 367 Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VDYAH +++ +L ++ + RI +V G GG+RD KR IMG+IA +LAD V Sbjct: 368 MVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGRIAAELADAVFV 427 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------------NRIEAIRTAIEMLNKQ 459 TDDNPR E+P IR I G ++K +R EAI A+ Sbjct: 428 TDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEAIAAAVTWARPG 487 Query: 460 DVLVVAGKGHETVHIVTN 477 D +VVAGKGHE +V Sbjct: 488 DAVVVAGKGHEKGQLVAG 505 >gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC 484] gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC 484] Length = 526 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 131/405 (32%), Positives = 194/405 (47%), Gaps = 34/405 (8%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIG 148 P+LV + R A+ + + ++ V T + FV + + ++ +G Sbjct: 95 PVLVAPDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGKTTTTYFVDAALRAAHRTTAVLG 154 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKAL----SYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ D + +P A AL + +G V++E SSH L R+ G+ Sbjct: 155 ---TVELRVGDEAVESPRTTVEAPALQGILALARERGAGAVAMEVSSHALALGRVRGLTF 211 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNA 263 FTNL RDH+D+H + YF K RLF P+++ ++ DD + + + A + Sbjct: 212 DVVGFTNLQRDHLDFHGDMEGYFRDKARLFA---PEQARRGVVVVDDEWGRRL---AATS 265 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----------LFPLPGEFQVY 313 V +V H + + G F PLPG V Sbjct: 266 PVPVETVATHVGDPHGADADWAVVAADIGLDGVGSTFTLRGPDGTEHAAASPLPGLVNVS 325 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI 372 NA +A L G+D A ++ + H +PGR E V G + VDYAHT ++L + Sbjct: 326 NAALAIVLAHTAGVDLATAVDAVAHAHEIPGRMERVVERGDGLPLCLVDYAHTPDALVLA 385 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+ +R IT GR+I+VFG GDRDQGKRPIMG+IA LAD+ +VTD+NPRSEDP IRA I Sbjct: 386 LEAVRPITPGRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTDENPRSEDPAVIRAAI 445 Query: 433 IHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + G+ G +R +AIR A+ + QD ++V GKGHE Sbjct: 446 LEGVRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGKGHE 490 >gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria MC40-6] gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MC40-6] Length = 512 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 153/482 (31%), Positives = 235/482 (48%), Gaps = 43/482 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +F+ + D FI A+A+GA A++ + A + Sbjct: 30 QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVARGAAAVLYQP-----EGLAAAPAVPV 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS YG +++LA VTGT+GK+S ++ + L++ P Sbjct: 85 ALAVPALDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIA-----AALTALHQ-P 138 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 139 CAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGT 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T AY AK +LF + AI+ DDA ++++ Sbjct: 199 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AIVNRDDAAGCRLLEKL-- 254 Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 AG RV ++ Y + + VCA + D D G F V Sbjct: 255 AG-RVRTIAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVS 313 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371 N L G +A + + + +L V GR + +G + + +DYAHT ++LE Sbjct: 314 NLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 373 Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I Sbjct: 374 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRI 433 Query: 429 RAEIIHG--IPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++I G +P + +R AI A+ ++DV+V+AGKGHE + G+K+ D Sbjct: 434 IDQVIAGMTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSD 492 Query: 486 CD 487 D Sbjct: 493 QD 494 >gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium smegmatis str. MC2 155] gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium smegmatis str. MC2 155] Length = 520 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 140/403 (34%), Positives = 197/403 (48%), Gaps = 20/403 (4%) Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 + P+LV R L A+ +YG+ E + V T + + + +G + Sbjct: 98 DVPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGL 157 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I + LTTP L L+ + +GV V +E SSH L Q R+DGI Sbjct: 158 IGTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFA 217 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKRAHNAG 264 G FTNL RDH+D+H T YF AK RLF+ P + A +I DD Y ++ RA Sbjct: 218 VGGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETP- 276 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V + G + K A Q+ V + G LPG + V NA +A L Sbjct: 277 LTVSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLD 336 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTIT 380 A+G+ L + VPGR E + G+ + VDYAH +L+ +L+ +R Sbjct: 337 AVGVSPEQAAPGL-RTATVPGRLESIDL----GQDFLALVDYAHKPGALQAVLETLRAAE 391 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 RI VVFG GGDRD GKR MG++ +LAD+ +VTDDNPRSEDP IR+ I+ G Sbjct: 392 PRRIAVVFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVA 451 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +E G+R AI A+ D++++AGKGHE+ V + Sbjct: 452 SDAEIVEIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGD 494 >gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium cellulosolvens 6] Length = 496 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 154/511 (30%), Positives = 245/511 (47%), Gaps = 54/511 (10%) Query: 9 KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K+ L+ L +Q E R+I V DSR G +FV I G DGH F P+ ++G Sbjct: 3 KNLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A A++V +A + + ++ V+N+R+ L+L ++ + HP L G +G Sbjct: 63 AAALIVETAVD-------VPAGVTVVKVENSRRALALISAEWF-DHPAKKLKTIGITGTK 114 Query: 128 SV---ASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQG 181 + VQ I +G IG TI+ N TTP + + + + G Sbjct: 115 GKTTTSYMVQSILNAAGHKCGLIGTIETITGKRVIPSPN--TTPISYLVNEYFAEMVEAG 172 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLP 239 + V +E SS L R+ GI G FTNLG+DHI + H+ + Y +K +LF++ Sbjct: 173 LDSVVMEVSSQALKYDRVTGIHFDFGIFTNLGQDHIGPNEHEDFEDYLASKKKLFDQC-- 230 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------------HN 287 + I+ DD +++ A C L + L+ A+ Sbjct: 231 --TIGIVNRDDKLFDRIVE---GAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQT 285 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + V I VE +PG+F VYN+L A +C G+ +++ L + V GR E Sbjct: 286 EGLVNIPVE-------VDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQARV-KGRVE 337 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V + + + +DYAH + +LE +L +R R++ +FGCGG+RD+ +R MG+++ Sbjct: 338 MVKVSDKF-TLMIDYAHNAMALESLLSTLREYHPARLVCLFGCGGNRDRERRFSMGEVSG 396 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463 +AD I+T DNPR E+P+ I +I+ GI + +R EAI AI D++V Sbjct: 397 KMADFTIITSDNPRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIV 456 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDI-IREIL 493 +AGKGHE I+ + KK +D + I EIL Sbjct: 457 LAGKGHEDYQIIKD--KKYPMDERVLIAEIL 485 >gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991] Length = 493 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 154/499 (30%), Positives = 235/499 (47%), Gaps = 48/499 (9%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +LS Q E +I + DSR + I+ + G DGH F+ IA+G +AIV + Sbjct: 9 KLSEMFEQAPEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVKAIVHAKP 68 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFV 133 + + V+N + L+ AS Y +HP + VTGT+GKS++ S + Sbjct: 69 IE------HMHKGVAYIQVENVNRTLNRIASLFY-QHPSRYMKVFGVTGTNGKSTITSII 121 Query: 134 QQI------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 Q + C G + + G S LTTP PI + K+++ + + G+ ++ Sbjct: 122 QDVYSHFHPCGYIGTIAIRYGDVELPPS------LTTPDPILIHKSMADMRAAGMEACAL 175 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGL+ R+ + F+NL DH+D+H T + Y AK +LF L + A++ Sbjct: 176 EVSSHGLELGRVMSVDFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTN-LKSDGVAVLN 234 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 DDAY + A R+++ G Y+ I ++ + Q T+ K + Sbjct: 235 RDDAYYQAF---ADCTNGRLVTYGIKHDSDYRAMDIQIQT-----DGSQFTLLHHEKSYT 286 Query: 302 FLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L + +YN L A AG+C A GI +L +L + + GR E + I V Sbjct: 287 IKTNLVAMYNIYNLLGAIAGMCEA-GIAIEDMLPYLASIKQIEGRMERIDEGQLFNVI-V 344 Query: 361 DYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 D+AHT + LE + + + IT II VFG G RD KR + G+IA D I+T+D Sbjct: 345 DFAHTPDGLEKVFEYAKDITKEGHSIIAVFGSAGKRDTKKRKVFGEIASKYCDSIILTED 404 Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +PR ED +I EI GI FIE +R AIR AIE D +++ GKG E Sbjct: 405 DPRDEDAREIANEIKEGIKDTKNIFIE--DRYNAIRQAIESAGAYDTVLILGKGDEVFMY 462 Query: 475 VTNGEKKMSVDCDIIREIL 493 G + D ++ RE + Sbjct: 463 REFGREPWLGDHNVARECI 481 >gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Staphylococcus epidermidis FRI909] Length = 494 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 139/470 (29%), Positives = 227/470 (48%), Gaps = 49/470 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++++++DSR + G +FVA G D H F + QG +VV+ L + Sbjct: 22 QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKL-------KG 74 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140 N +VV +T + SL A LY H VTGT+GK+S+A+ + I ++ Sbjct: 75 NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + FQ+ T T + TTP + L K + +++E SSHGL RL Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--------- 307 A V + G H + A + K+ S++G +F+F P Sbjct: 249 ---ASVTPYEVFTYG----ITHEAQFMAKNIKE----SLQGVEFEFFTPFGSFPVRSPYV 297 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F + N + A + G + ++ + +L V GR E + S + +DYAHT++ Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHTAD 356 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP+ Sbjct: 357 GMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDPKM 415 Query: 428 IRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + AE+ G +IE +R E IR AI++ D +V+A KG E I+ Sbjct: 416 LTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii L2-6] Length = 492 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 224/460 (48%), Gaps = 29/460 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I ++ DSR G +FV IVG + D H + Q +A G A+VV D + Sbjct: 20 ELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADGVTALVVQ-----HDIDLST 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 +L V+++R L+L + L+G ++ VTGT GK++ ++ + + +G Sbjct: 75 VPGAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTTTTHMIKSVLEAAGRKV 134 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG Q+ TTP L K G +E SS GL R+ GI Sbjct: 135 GMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALMEVSSQGLMMDRVAGIH 194 Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G FTNL DHI H+T + Y + K +LF+ + ++ DD + E + H Sbjct: 195 YDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFKRC----TTGVVNIDDE-NTEALLEGH 249 Query: 262 NAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317 C++++ G K + ++ H+ V V GKD D +PGEF VYNAL Sbjct: 250 T--CKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSGKDDMDVKVNMPGEFSVYNALA 307 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +G+ + E L + VV GR E V SR I +DYAH S E +L +R Sbjct: 308 ALTVGKVLGLPDEAIHEGLGRC-VVKGRVELVPI-SRKFTILLDYAHNEVSTESLLTTLR 365 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 R++VVFGCGG+R + +R MG+I +AD +I+T+DN R E E I A+I G+ Sbjct: 366 AYEPHRLVVVFGCGGNRSKLRRYGMGEICARMADFSILTEDNNRFEKVEDILADIRVGMN 425 Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 F+E +R++A+ A++ + D++ V GKGHET Sbjct: 426 KGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHET 465 >gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae LPCoLN] Length = 483 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 151/490 (30%), Positives = 242/490 (49%), Gaps = 55/490 (11%) Query: 10 DFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D EL++ Q I+ + R ++ ++ DSR + G IF+A G + DG+ F A+A G Sbjct: 2 DLKELLHGVQAKIY-GKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANG 60 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI S I N L + + K+ +S+L+ + VTGT+GK+ Sbjct: 61 AIAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLH------TIGVTGTNGKT 114 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180 +V ++ + L S+Q P+ + + + TTP+P L K L+ + Q Sbjct: 115 TVTCLIKAL-----LDSYQ-KPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQ 168 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +E SS GL R+ TN+ DH+D+H T +AY AK +LF L+P Sbjct: 169 NRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLF-SLVPP 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLK----KVCAIHNKQQ 290 +I D Y+ + ++ +A V++ G Y+ I L K ++ Q+ Sbjct: 228 SGMVVINTDSPYASQCIE---SAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + S F+ G++ VYN L A + + ++ D +LE + PGR + V Sbjct: 285 IACSSS-----FI----GKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPV 335 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 +Y+DYAHT ++L+ +L + + GR+IVVFGCGGDRD+ KR +M ++ + Sbjct: 336 LMGP--CPVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQV-V 392 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + A+VT DNPRSE PE I EI G FIE +R +AI A+ + + +D++++ Sbjct: 393 ERYGFAVVTSDNPRSEPPEDIVNEICDGFYSKNYFIEI-DRKQAITYALSIASDRDIVLI 451 Query: 465 AGKGHETVHI 474 AGKGHE I Sbjct: 452 AGKGHEAYQI 461 >gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum ATCC 13032] Length = 517 Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 151/465 (32%), Positives = 224/465 (48%), Gaps = 21/465 (4%) Query: 27 ERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+ I + DS + + IF A+ G + G F A A AI+ +A L+ + Sbjct: 26 EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAA-GLEVLNEA 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 + P++VVD+ R L +S +YG ++ ++ VTGTSGK++ + +++ +G Sbjct: 85 GETR-PVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGHK 143 Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T T I +LTTP L + + GVTHV +E SSH L R+ G Sbjct: 144 VGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAGS 203 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261 +FTNL +DH+D+H T YF+AK F P ++ DD++ + + A Sbjct: 204 HFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVAA 263 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAG 320 + V ++G + F + Q I+ + + LPG F V NA +A Sbjct: 264 DVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAFA 322 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +G+D + K+ VPGR E + + VDYAH ++ +L +RT Sbjct: 323 AAARVGVDGEAFARGMSKV-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQI 380 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438 GR+ VV G GGDRD KR MG+++ AD+ IVTDDNPRSE P IRA + G Sbjct: 381 DGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDDNPRSEVPATIRAAVTAGAQQGA 440 Query: 439 --------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E G+R EAIR +E D +VVAGKGHE +V Sbjct: 441 SESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLV 485 >gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te ligase mure [Rhodococcus equi 103S] gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase MurE [Rhodococcus equi 103S] Length = 501 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 153/499 (30%), Positives = 235/499 (47%), Gaps = 54/499 (10%) Query: 1 MKLQDLIYKDFP----ELINQL-------SIFPMQWRERKINEVSSDSRHIQAGWIFVAI 49 M L+DL P E++++L + P+ R R I V DSR ++ G ++ A+ Sbjct: 1 MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDR-RVITGVCQDSRRVRPGDLYAAL 59 Query: 50 VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109 G + G F +A A+GA A+ L D + I P +VVD+ R L A+ Sbjct: 60 PGRRHHGADFASEASARGAVAM-------LSDRPSDI---VPTVVVDDPRVALGPLAAWA 109 Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPS 166 YG ++ VTGT+GK+S ++ +GL + + G T A+ TTP Sbjct: 110 YGNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPE 169 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 L ++ +GV V++E SSHGL +HR+DG + G FTNL RDH+DYH +AY Sbjct: 170 ACELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAY 229 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 + AK RLF L + + I DD Y + + S G ++ V A Sbjct: 230 YTAKARLFGRDLCERAAVCI--DDDYGRRLAGEVAVPHL-TFSARDPGADVYATTVRAQR 286 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ G+ + G QV NA+ A GID + +E L +PGR Sbjct: 287 WGSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRL 346 Query: 347 EFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 E V G+ + VDY H + + +R++T GRI+VV G G+RD GKR +G Sbjct: 347 ERVDV----GQPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLG 402 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR------------AEIIHGIPGFIEKGNRIEAIRT 451 A A++ +VTD++ S+D +R AE++ IP +R EAI Sbjct: 403 FTAARYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVV-IP------DRGEAIAV 455 Query: 452 AIEMLNKQDVLVVAGKGHE 470 A+++ D +++AG+GH+ Sbjct: 456 AVDLAGAGDTVLLAGRGHD 474 >gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MEX-5] gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria MEX-5] Length = 512 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 152/484 (31%), Positives = 240/484 (49%), Gaps = 47/484 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +F+ + D FI A+A GA A++ Y + +A P Sbjct: 30 QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVAGGAAAVL----YQPEGLAAA--PAMP 83 Query: 92 I-LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + L V + AS YG +++LA VTGT+GK+S ++ + L++ Sbjct: 84 VALAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ- 137 Query: 149 PTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 P + I + TTP L ++L+ L+ G V++E SSH L Q R++G Sbjct: 138 PCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAMEVSSHALHQGRVNG 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH+T AY AK +LF + A++ DDA ++++ Sbjct: 198 TAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGCRLLEKLA 255 Query: 262 NAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQ 311 RV ++ Y QG +++ A+ + T + D G F Sbjct: 256 G---RVRTIAYGIGDAQGPDAD-RELVALDVRATATGTAFRLRSSWGDAHVEVGTLGAFN 311 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369 V N L G +A + + + +L V GR + +G + + +DYAHT ++L Sbjct: 312 VSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDAL 371 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 E L +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ Sbjct: 372 EKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQ 431 Query: 427 KIRAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 +I ++I G+ P + +R AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 432 RIIDQVIAGMTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKGHEATQEIM-GKKRAF 490 Query: 484 VDCD 487 D D Sbjct: 491 SDQD 494 >gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium prausnitzii SL3/3] Length = 492 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 152/487 (31%), Positives = 242/487 (49%), Gaps = 38/487 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + P + Q S+ + +I ++ DSR G +FV IVG + D H F Sbjct: 1 MKLEQLM-EGVPFTLVQGSL------DTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+G A+V+ D + ++ V+++R ++L ++ L+G ++ Sbjct: 54 ADCAAKGVSALVIQ-----HDIDLSALPGVTVVKVESSRYAMALMSANLFGNPARQMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSY 176 VTGT GK++ ++ + + +G IG T+ I +D TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIG-TNGIYYMGRHKDTANTTPESYELQKTFRE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234 G +E SS GL R+ G+ G FTNL DHI H+T + Y + K +LF Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291 + ++ DD + +++ H C++++ G K + + K+ H+ V Sbjct: 228 KRC----DVGVVNIDDENTAALLE-GHT--CKLVTYGRDEKADYRETGYKLLRTHDFLGV 280 Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V GKD D +PGEF VYNAL A + +G+ A + + L K VV GR E V Sbjct: 281 AFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGKC-VVKGRVELVP 339 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S+ I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +A Sbjct: 340 I-SKKFTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D +I+T+DN R E E I A+I G+ F+E +R++A+ A++ + D++ V Sbjct: 399 DFSILTEDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458 Query: 465 AGKGHET 471 GKGHET Sbjct: 459 IGKGHET 465 >gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271] Length = 496 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 146/477 (30%), Positives = 236/477 (49%), Gaps = 37/477 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87 +I ++ +D+R++ G FVAI G + DGH + Q A GA+ +VV + QD+ + Sbjct: 23 EITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGAKLMVVEVLPENWQDYPLSF- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +V +T + +L A++ +G+ E N++AVTGT+GK++++S + + R G + Sbjct: 82 -----FLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTISSLISDLLMRLGHKTG 136 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG + + TTP+ + L + + + S G +EASSH L RL + Sbjct: 137 LIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEASSHALALGRLWATDI 196 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESP--AIIYADDAYSKEVMKR 259 FTNL R+H+D+H+T + Y AK LF +L K E P AII ADD Y+ +M + Sbjct: 197 DCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRLAIINADDPYAS-IMMQ 255 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A +A S+ + ++ Q + + + + P+ G + V N +AA Sbjct: 256 ATSADVLTYSLEDPKASAYADQLAVQDGNQTFRLHYRNQTYQVVSPMLGAYNVAN-FMAA 314 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--------IYVDYAHTSNSLEM 371 LC+ +D H++ VV F G R R + VD+AHT +++E Sbjct: 315 FLCL---VD----YYHVQPQTVVDLMLSFGGVEGRMQRLDLGQEFQVVVDFAHTPDAIER 367 Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ ++ + R++ + G GG+RD G RP +G + +D I T DNPR E KI A Sbjct: 368 VLQELKAQSPKRLVTIIGHSGGNRDSGARPEIGDKVFEYSDWIIFTADNPRHEPVAKICA 427 Query: 431 EII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 E+I H + +R AI I D+LV AGKG E I+ G+ K+ D Sbjct: 428 ELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGSEPYQII--GDDKLPYD 482 >gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dietzia cinnamea P4] gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Dietzia cinnamea P4] Length = 436 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/401 (32%), Positives = 194/401 (48%), Gaps = 16/401 (3%) Query: 43 GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102 G +F A+ G + G F A+ GA A++ + A + P+LV R L Sbjct: 39 GILFAALPGTRVHGASFGATAVEAGASAVLTDPEGI--ELMAAVAGRLPVLVHPAPRAVL 96 Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPT-STISSFAQD 159 ++ + G ++ V T + V+ + G + IG T S + A Sbjct: 97 GAVSAAVTGDPSADLDVVGITGTSGKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALP 156 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 +RLTTP L+ + + G V+ E SSH L R+DG++ G+F NL +DH+D+ Sbjct: 157 SRLTTPEAPEFQALLARMRAAGARAVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDF 216 Query: 220 HQTQQAYFNAKMRLFE-------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H + YF AK RLF+ + P E A++ DD + + ++ +A Sbjct: 217 HPSMDDYFRAKARLFDVEADPGSAVWPAER-AVVVIDDEWGRRLVGMRPDAVTVSAEPDA 275 Query: 273 QGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + Q+ T+ G D PL G F V NALVA + A+G D A Sbjct: 276 DADWTAGESTPTDRDTQEFTVRGPRGLTVDVELPLMGRFNVANALVALAIVDALGGDVAA 335 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 L ++ V PGR E V + R+ VDYAH ++ +L+++R T GR+ VV G G Sbjct: 336 AAAGLMRVRV-PGRLEPV-VRGQDFRVLVDYAHKPGAVAAVLRSVRAQTEGRVAVVLGAG 393 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 GDRD GKRP MG A ++AD+ +VTDDNPRSEDP IRA + Sbjct: 394 GDRDPGKRPKMGAAAAEIADLVVVTDDNPRSEDPAAIRAAV 434 >gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum ATCC 13032] gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum ATCC 13032] gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Corynebacterium glutamicum R] gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium glutamicum ATCC 13032] gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R] Length = 521 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 224/466 (48%), Gaps = 23/466 (4%) Query: 27 ERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSA 84 E+ I + DS + + IF A+ G + G F A A AI+ +A + + + Sbjct: 30 EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAAGLEVLNEAG 89 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 R P++VVD+ R L +S +YG ++ ++ VTGTSGK++ + +++ +G Sbjct: 90 ETR---PVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGH 146 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T T I +LTTP L + + GVTHV +E SSH L R+ G Sbjct: 147 KVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAG 206 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRA 260 +FTNL +DH+D+H T YF+AK F P ++ DD++ + + A Sbjct: 207 SHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVA 266 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAA 319 + V ++G + F + Q I+ + + LPG F V NA +A Sbjct: 267 ADVQT-VSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAF 325 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +G+D + K+ VPGR E + + VDYAH ++ +L +RT Sbjct: 326 AAAARVGVDGEAFARGMSKV-AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQ 383 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 GR+ VV G GGDRD KR MG+++ AD+ IVTDDNPRSE P IRA + G Sbjct: 384 IDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDDNPRSEVPATIRAAVTAGAQQG 443 Query: 439 ---------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E G+R EAIR +E D +VVAGKGHE +V Sbjct: 444 ASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLV 489 >gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 508 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 234/471 (49%), Gaps = 34/471 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVG---NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-AT 85 I+ + SDSR ++ G++F + N+ + H+ AI GA+ I+ + ++ + Sbjct: 26 ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMI--HAIKNGAKIILYDTKQKFKNGTLKK 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 I ++ PI+ K L + Y H EN ++ +TGT+GKS+ V Q + L Sbjct: 84 IINHVPIIYFFKLSKNLPQILKKYY--HFENNFTLIGITGTNGKSTTTHIVSQ---WANL 138 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + +IG T+ +N TT S + + L ++ Q + ++E SSHG+ QHR Sbjct: 139 LNVKIGIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHR 198 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ + TN+ +H+DYH+T Y NAK F + + II ADD +K +K Sbjct: 199 IEQLPFKIAILTNITPEHLDYHRTMDNYINAKKAFFFKY--NINTLIINADDLIAKTWIK 256 Query: 259 RAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + ++ ++ Q K+IH K+ N + + L G F Sbjct: 257 KLNHKNVITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWGHGILNSTLIGHFN 316 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V N L+A + + +++ + + + GR E + ++ ++ +DYAH +N L+ Sbjct: 317 VINILLALATLLELNYPITDLVKVCKYIKTISGRMEHIHIVNKP-KVIIDYAHNTNGLKN 375 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L ++ I +I +FGCGGDRD+ KRP MG IA ++D I+T+DNPR+E P KI Sbjct: 376 LLSTLKEIFNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMSDQVILTNDNPRNEHPLKIIK 435 Query: 431 EIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I+ G F K NR AI+ A+ +K+D++VVAGKGHE I+ N Sbjct: 436 NILSGCK-FKNKIRIIPNREHAIKFAVNNADKEDIIVVAGKGHEKYQIINN 485 >gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia glumae BGR1] gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia glumae BGR1] Length = 515 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 155/490 (31%), Positives = 234/490 (47%), Gaps = 56/490 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +F+A + D + A+++GA A++V + A I + P Sbjct: 30 QLHADTRSLRAGDVFLAYAVDGADNRPHLANALSRGAAAVLVQP-----EGYAGIDALDP 84 Query: 92 I--LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L V AS YG + ++ VTGT+GK+S ++ + L++ + Sbjct: 85 AVALAVPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIA-----TALTALRR 139 Query: 148 GPTSTISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 P + I + RL TTP L ++L+ L G V++E SSH L Q R++ Sbjct: 140 -PCAVIGTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVN 198 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNL +DH+DYH+T +AY AK +LF + AII DDA ++ A Sbjct: 199 GTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AIINRDDAAGGRLL--A 254 Query: 261 HNAGCRVLSVGY----------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 AG RV +V Y + + +V A ++ D D G F Sbjct: 255 TLAG-RVRTVAYGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLF 313 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-------YVDYA 363 V N L + + L + +L V GR + +G GRI VDYA Sbjct: 314 NVSNLLAVLATLLVADLPFDAALAEMRRLESVNGRMQRLG-----GRIDHDEPLVVVDYA 368 Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 HT ++LE L+ +R I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNP Sbjct: 369 HTPDALEKTLEALRPIAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLADRVVVTSDNP 428 Query: 421 RSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 RSE P I +I +H G + +R AI A+ ++DV+++AGKGHE + Sbjct: 429 RSEAPLAIIEQIASGMHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM- 487 Query: 478 GEKKMSVDCD 487 G+K+ D D Sbjct: 488 GKKRQFSDQD 497 >gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii M21/2] Length = 492 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 145/459 (31%), Positives = 229/459 (49%), Gaps = 31/459 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ DSR G +FV IVG + D H F A+G A+V+ D + Sbjct: 22 EIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCAAKGVSALVIQ-----HDIDLSTLP 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ V+++R ++L ++ L+G ++ VTGT GK++ ++ + + +G Sbjct: 77 GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTTTHMIKSVLEAAGRKVGM 136 Query: 147 IGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T+ I +D TTP L K G +E SS GL R+ G+ Sbjct: 137 IG-TNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALMEVSSQGLMMDRVAGVHY 195 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL DHI H+T + Y + K +LF+ ++ DD + +++ H Sbjct: 196 DVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFKRC----DVGVVNIDDENTAALLE-GHT 250 Query: 263 AGCRVLSVGYQGKFIHLK---KVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318 C++++ G K + + K+ H+ V V GKD D +PGEF VYNAL A Sbjct: 251 --CKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKVNMPGEFSVYNALAA 308 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G+ A + + L K VV GR E V S+ I +DYAH S E +L +R Sbjct: 309 LAVGKVLGLPDAAIHDGLGKC-VVKGRVELVPI-SKKFTILLDYAHNEVSTESLLTTLRA 366 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 R++VVFGCGG+R + +R MG+I +AD +I+T+DN R E E I A+I G+ Sbjct: 367 YKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILTEDNNRFEKVEDIIADIREGMNK 426 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 F+E +R++A+ A++ + D++ V GKGHET Sbjct: 427 GNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHET 465 >gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques L2-14] Length = 488 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 141/459 (30%), Positives = 233/459 (50%), Gaps = 37/459 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + +DSR ++ G +FV I G DGH + A+ +A + + + Sbjct: 22 EVTTLINDSRKVEEGSVFVCISGAVSDGHKYAADVAAK-------GAAAVVVEKDVEVPE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 N ++ V++TR L+L ++ +G +P + + V G +G + ++ I + +G Sbjct: 75 NVTVIKVEDTRYALALMSAAYFG-YPADKMKVIGITGTKGKTTTTYMIKSILEETG---H 130 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + D ++ TTP + K + + G V +E SS GL HR G Sbjct: 131 KVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEMVEAGCDCVVMEVSSQGLMLHRTAG 190 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I G FTNLGRDHI + H+ Y K LF++ I DD Y K+V K Sbjct: 191 IPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLFKQC----KLGIANVDDKYFKDVFK- 245 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS--VEG-KDFDFLFPLPGEFQVYNA 315 + C++ + G+ + + + V + + ++ V G DFD +PG+F VYN+ Sbjct: 246 --GSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAGVMDFDVEIDVPGKFSVYNS 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +C + ++ + L+K V GR E + S + +DYAH + SLE +L Sbjct: 304 LTAISVCRHFQVPVEMIKDALKKAKV-KGRIEMIKV-SDDFTLMIDYAHNAMSLESLLTT 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+P+ I +I G Sbjct: 362 LKEYNPKRLVCLFGCGGNRSKDRRFEMGEVSGRLADLTIITSDNPRFEEPQDIINDIKTG 421 Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I ++E +R EAI+ AIE DV+V+AGKGHE Sbjct: 422 IAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKGHE 460 >gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces violaceusniger Tu 4113] Length = 537 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 144/479 (30%), Positives = 229/479 (47%), Gaps = 32/479 (6%) Query: 13 ELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL +QL + P + ++ DSR ++ G ++ A+ G + G F QA GA A+ Sbjct: 19 ELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAVAV 78 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129 + A + + + + P+L VDN R + A+ +YG+ ++L +TGTSGK++ Sbjct: 79 LTDPAGAERAAA----TGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTT 134 Query: 130 ASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 A ++ + + + G T+ + D R+ TTP L + + + V Sbjct: 135 AYLIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHS 194 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V +E SSH L R+DG F NL +H+++H + YF AK +LF + + Sbjct: 195 VVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKA--RSRAG 252 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFL 303 +I DD Y + +++++ + G+ V + G+ Sbjct: 253 VINYDDEYGRRLIEQSEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESVRAA 312 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360 PLPG F V NAL A GID + + + VPGR E V G+ Y V Sbjct: 313 APLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDV----GQPYLAVV 368 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAH ++++E +L+ +R +T G++ V GCGGDRD+ KR MG +D A++T DNP Sbjct: 369 DYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGAAVARYSDTAVLTSDNP 428 Query: 421 RSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 RSEDP I A ++ G +P E+G +R AI A+ D ++VAGKGHE Sbjct: 429 RSEDPLAILAAMLAGAAEVPAH-ERGDVLVEEDRANAIAAAVARAEPGDTVIVAGKGHE 486 >gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. 383] gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. 383] Length = 512 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 151/482 (31%), Positives = 233/482 (48%), Gaps = 43/482 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D FI A+A+GA A++ + A + Sbjct: 30 QLHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAAVLYQP-----EGLAAAPAVPV 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS YG +++LA VTGT+GK+S ++ + L++ P Sbjct: 85 ALAVPALDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ-P 138 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 139 CAVIGTLGTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGT 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T AY AK +LF + A+I DDA + ++++ Sbjct: 199 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGQRLLEKLAG 256 Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 RV ++ Y + + V A + D D G F V Sbjct: 257 ---RVRTIAYGIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVGTLGTFNVS 313 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371 N L G +A + L + +L V GR + +G + + +DYAHT ++LE Sbjct: 314 NLLAVLGSLLAADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 373 Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R I + GR++ +FGCGGDRD KRP+MG IA AD +VT DNPRSEDP++I Sbjct: 374 TLDALRPIATARGGRLVCMFGCGGDRDATKRPLMGAIAERFADETVVTSDNPRSEDPQRI 433 Query: 429 RAEIIHGI--PGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I+ G+ P + +R AI A+ ++DV+V+AGKGHE + G+K+ D Sbjct: 434 IDQIVAGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSD 492 Query: 486 CD 487 D Sbjct: 493 QD 494 >gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii DSM 13941] Length = 515 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 220/465 (47%), Gaps = 31/465 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR + G +FVA G DGHL+IPQAI +GA A+V +D + R Sbjct: 25 ITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAAAVV------YEDPAWDGRIP 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS-FVQQICQRSGLSSFQIG 148 P L N R L+ A+ YG + V T + F+ + +G + + Sbjct: 79 VPALRTPNARAALAPLAAAFYGYPGRQMRVVGITGTDGKTTTTFLTSVALEAGGAVTGLM 138 Query: 149 PTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--QHRLDGI 202 T +A D+R +TP + L + G + VEA+SH L +RL G Sbjct: 139 GTVDFKIAGRLWANDSRQSTPEAPEVQALLRDMVHAGCAYAVVEATSHALSARWNRLAGC 198 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------LPKESPAIIYADDAYS 253 TN+ ++H+D+H T + Y K RLFE L + AI+ ADD Sbjct: 199 AFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFHDDATPFKQRKIAIVNADDPNH 258 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + A R+ + + + V + + ++ D L G+F V+ Sbjct: 259 RMFLDAAPPYAERLTYAIHANADVCARNVRSTRDGLMFRVTTPWGAADAHLRLTGDFNVW 318 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A + A G+ ++ L LE++ V GR E + + + VDYAHT + E ++ Sbjct: 319 NALAALTVACAEGVPLSVCLAALERVPGVRGRMERI-EMGQPFTVLVDYAHTPGAFEKLM 377 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R +T G++IVVFG G+RD+ KRP+ G+IA D+ ++TD++PR ED E I AEI Sbjct: 378 RIVRPLTDGQLIVVFGSAGERDRAKRPLQGEIAGRFCDLVVLTDEDPRLEDREAIIAEIA 437 Query: 434 HGIPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ ++ +R AIRTA D++++ GKGHE Sbjct: 438 VGVEAAGKRIGETCLCIPDRAHAIRTAFARARPGDIVLLLGKGHE 482 >gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis RP62A] gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis ATCC 12228] gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis RP62A] gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis BCM-HMP0060] gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis SK135] gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU028] gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU045] Length = 494 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++++++DSR + G +FVA G D H F + QG +VV+ L + Sbjct: 22 QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELEL-------KG 74 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140 N +VV +T + SL A LY H VTGT+GK+S+A+ + I ++ Sbjct: 75 NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + FQ+ T T + TTP + L K + +++E SSHGL RL Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248 Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 A V + G ++ +F+ + + S++G +F+F P Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F + N + A + G + ++ + +L V GR E + S + +DYAHT Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E IR AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia gladioli BSR3] gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Burkholderia gladioli BSR3] Length = 514 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 157/485 (32%), Positives = 234/485 (48%), Gaps = 60/485 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPIL 93 SDSR +QAG +F+A + D I A+A+GA A++V +++ + + P L Sbjct: 33 SDSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHAVPDL 92 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 AS YG + + AV TGT+GK+S ++ + LS+ + P + Sbjct: 93 -----GALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIA-----TALSALRT-PCA 141 Query: 152 TISSFAQD--NRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 I + RL TTP L ++L+ L +G V++E SSH L Q R++G Sbjct: 142 VIGTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGRVNGTAF 201 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+DYH+T +AY AK +LF + A++ DDA ++ A AG Sbjct: 202 DVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AVVNRDDAAGARLL--ATLAG 257 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-------------GEFQ 311 RV +V Y I + ++Q + V F L G F Sbjct: 258 -RVRTVAYG---IDERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFN 313 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-------IYVDYAH 364 V N L G + + L L +L V GR + + GGR + VDYAH Sbjct: 314 VSNLLAVLGTLLVADVPFEAALAELRRLESVNGRMQRL-----GGRVANDEPLVVVDYAH 368 Query: 365 TSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 T ++LE L+ +R I R ++ +FGCGGDRD KRP+MG IA LAD +VT DNPR Sbjct: 369 TPDALEKTLEALRPIAEARGGALVCMFGCGGDRDATKRPLMGGIAERLADRVVVTSDNPR 428 Query: 422 SEDPEKIRAEIIHGI--PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 SE P I +I+ G+ PG + +R AI A+ ++DV+++AGKGHE + Sbjct: 429 SEPPLAILEQIVAGMKTPGAALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIMGK 488 Query: 479 EKKMS 483 +++ S Sbjct: 489 KREFS 493 >gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149] Length = 491 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 246/477 (51%), Gaps = 36/477 (7%) Query: 11 FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+ +L +Q ++ +I + +DSR ++ G +FV I G DGH ++ +GA+ Sbjct: 3 LKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAK 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127 A++V QD A + ++ V++TR L+L ++ +G E + + +TGT GK+ Sbjct: 63 AVIVQ-----QDVEAP--AGMTVIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + ++ I + G ++G TI + + + TTP + + + + G Sbjct: 116 TTTYMIKSILEGVG---HKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCD 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241 V +E SS GL HR GI G FTNLG+DHI + H+ + Y K LF++ Sbjct: 173 SVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLLFQQC---- 228 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTIS--VEG- 297 I ADD Y K+V K NA C+V + G+ + + + V + + ++ V G Sbjct: 229 RVGIANADDRYFKDVFK---NATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGV 285 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 DFD +PG F VYN+L A +C + + L+K V GR E V + Sbjct: 286 MDFDVEIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAKV-KGRIEMVKVSDEF-T 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T Sbjct: 344 LMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTIITS 403 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPR E+P+ I +I GI ++E +R EAIR AI +V+V+AGKGHE Sbjct: 404 DNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKGHE 460 >gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces flavogriseus ATCC 33331] Length = 575 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 236/478 (49%), Gaps = 37/478 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +L P E + ++ DSR ++ G ++ A+ G + G F QA GA AI+ Sbjct: 68 ELAARLGAGPQDAGE--VTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAAIL 125 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + + + + P+LV D+ R + A+ +YG+ +L +TGTSGK++ A Sbjct: 126 TDPAGAERAAATGL----PVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTA 181 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ + +G S+ IG T+ D R+ TTP L + + +GV V+ Sbjct: 182 YLVEGGLRGAGRSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVA 238 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245 +E SSH L R+DG F NL +H+++H + YF AK +LF P+ S + Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSKLGV 295 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD Y + ++ A + G+ + V + I +G+ Sbjct: 296 VNFDDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKA 355 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361 PLPG F V N L A GID + + + + VPGR E + G+ Y VD Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDA----GQPYLAVVD 411 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPR Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 471 Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 SEDP I A ++ G +P E+G+ + AI A+ D ++VAGKGHE Sbjct: 472 SEDPLGILAAMLSGAAEVP-VHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHE 528 >gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU144] Length = 494 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/472 (29%), Positives = 228/472 (48%), Gaps = 53/472 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++++++DSR + G +FVA G D H F + QG +VV+ L + Sbjct: 22 QVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELEL-------KG 74 Query: 89 NTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRS------ 140 N +VV +T + SL A LY H VTGT+GK+S+A+ + I ++ Sbjct: 75 NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNSAY 134 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + FQ+ T T + TTP + L K + +++E SSHGL RL Sbjct: 135 LGTNGFQVNETKTKGAN------TTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRL 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEV 256 G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S + Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYL 248 Query: 257 MKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 A V + G ++ +F+ + + S++G +F+F P Sbjct: 249 ---ASVTPYEVFTYGITHEAQFM----------AKNIKESLQGVEFEFCTPFGSFPVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F + N + A + G + ++ + +L V GR E + S + +DYAHT Sbjct: 296 YVGRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG++A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGRVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G +IE +R E IR AI++ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIM 465 >gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus coahuilensis m4-4] Length = 443 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 135/423 (31%), Positives = 213/423 (50%), Gaps = 31/423 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I+++ DSR ++ +++ + G + D H +I QAI GA AI+V Sbjct: 22 EISQIEMDSRRVKNQCMYICVPGIEGFLADRHDYIDQAIENGAHAILVEK-------EVD 74 Query: 86 IRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + S+ ++ V++ R K ++F + Y + I+ +TGT+GK++ V+++ +G Sbjct: 75 VPSHITVVRVEDVRLAFSKIATVFHNEAYKQ--LKIIGLTGTNGKTTTTFLVEKLLNDAG 132 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L + +G T I+ L T P L + + + + + + +E SS G+D R+ Sbjct: 133 LKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNFAKMVEEDMEYCVMEVSSQGIDMGRMK 192 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMK 258 G+ G TNL DH+DYH T Y ++K +LF L E P I D S K Sbjct: 193 GVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLFTHLEEFEGEKPLAILNKDDDSYAYFK 252 Query: 259 RAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 A +S G Q +H K IH K S+E ++ PL G+F V Sbjct: 253 NASRG--ETISYGIDQDSIVQASELHFNK-NGIHFKVTNKRSLEEQEIHL--PLVGKFNV 307 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YNAL A + +G+ LE L +PGR E T + G + VDYAHT ++LE + Sbjct: 308 YNALAAITVAYTVGVTLEESKRSLENLSQIPGRMESF-TTANGVTVIVDYAHTPDALENV 366 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L+++++ G++I V GCGG+RD+ KRPIMGKIA + +D T DNPR E PE+I + Sbjct: 367 LQSLKSSLDGKLITVVGCGGNRDENKRPIMGKIAAECSDYVYFTSDNPRFEQPEQILEGM 426 Query: 433 IHG 435 + G Sbjct: 427 VAG 429 >gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 498 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 147/482 (30%), Positives = 232/482 (48%), Gaps = 30/482 (6%) Query: 16 NQLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 N L F W ++ IN + DSR ++ IF+A+ G K+DGH FI +A+++ A+ Sbjct: 4 NNLKYFLSPWIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAV 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + Q +N PI+ K LS + R Y + ++ +TGT+GK++V Sbjct: 64 LSEVSERKQHGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTV 123 Query: 130 ASFVQQICQRSGLSSFQIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 Q I Q S L +I T+ S +N TT S I + L Y V Sbjct: 124 T---QLINQWSELLGDKIATMGTLGNGFYKSLIPTEN--TTASAIDIQSFL-YSVLNKVK 177 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSHGL Q+R+ I A FTNL +DH+DYH+ + Y AK LF + + Sbjct: 178 SVTIEVSSHGLVQNRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTD--HTVNK 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEG 297 I+ A+D Y++ +K+ N +++ Y K+++ + K V Sbjct: 236 IILNANDKYAQNWLKKFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSW 295 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L G F + N L+A + + + +++ ++ + GR + + Sbjct: 296 GHGILSTYLIGTFNIKNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPI 355 Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +DYAHT ++LE L I+ +I +FGCGG+RD+ KRP+MG+IA +A+ ++T Sbjct: 356 CIIDYAHTPDALEKSLNAIKIQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIANKVVIT 415 Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 +DNPR ED KI EII G I NR +AI N D++ +AGKGHE Sbjct: 416 NDNPRHEDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQ 475 Query: 474 IV 475 I+ Sbjct: 476 II 477 >gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae CWL029] gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae J138] gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae TW-183] gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae CWL029] gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Chlamydophila pneumoniae AR39] gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae J138] gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae TW-183] Length = 483 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 150/490 (30%), Positives = 241/490 (49%), Gaps = 55/490 (11%) Query: 10 DFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 D EL++ Q I+ + R ++ ++ DSR + G IF+A G + DG+ F A+A G Sbjct: 2 DLKELLHGVQAKIY-GKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANG 60 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A AI S I N L + + K+ +S+L+ + VTGT+GK+ Sbjct: 61 AIAIASSLYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLH------TIGVTGTNGKT 114 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQ 180 +V ++ + L S+Q P+ + + + TTP+P L K L+ + Q Sbjct: 115 TVTCLIKAL-----LDSYQ-KPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQ 168 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V +E SS GL R+ TN+ DH+D+H T + Y AK +LF L+P Sbjct: 169 NRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLF-SLVPP 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLK----KVCAIHNKQQ 290 +I D Y+ + ++ +A V++ G Y+ I L K ++ Q+ Sbjct: 228 SGMVVINTDSPYASQCIE---SAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQK 284 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + S F+ G++ VYN L A + + ++ D +LE + PGR + V Sbjct: 285 IACSSS-----FI----GKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPV 335 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 +Y+DYAHT ++L+ +L + + GR+IVVFGCGGDRD+ KR +M ++ + Sbjct: 336 LMGP--CPVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQV-V 392 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464 + A+VT DNPRSE PE I EI G FIE +R +AI A+ + + +D++++ Sbjct: 393 ERYGFAVVTSDNPRSEPPEDIVNEICDGFYSKNYFIEI-DRKQAITYALSIASDRDIVLI 451 Query: 465 AGKGHETVHI 474 AGKGHE I Sbjct: 452 AGKGHEAYQI 461 >gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC BAA-613] Length = 511 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/490 (30%), Positives = 235/490 (47%), Gaps = 39/490 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV----VSSAYSLQDFSA 84 ++ EV DSR G +FV + G + D H F+P + G +V + + + Sbjct: 22 EVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVRVLVTERDIEEELAASGLAE 81 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSG 141 IL R+ L+L ++ +G +P + + G +G + ++ I + +G Sbjct: 82 HEMGRVTILKTAEARRSLALLSAARFG-YPASKMITIGVTGTKGKTTTTHMIKAILEAAG 140 Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T T I+ TTP L ++ + ++ G ++ +E SS G+ HR+D Sbjct: 141 KKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGCQYMIMEVSSQGIKMHRVD 200 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ G FTN+ DHI D H Y K RL L ++ +D + KE++K Sbjct: 201 GLAFDYGIFTNISPDHIGPDEHADFAEYLCCKSRL----LSMCRIGLVNLNDGHFKEIVK 256 Query: 259 RAHNAGCRVLS--VGYQGKFIHLKKVCAIHNKQQVT--------ISVEGK-DFDFLFPLP 307 +A CR+ + V G+ K N + V+ V G D D +P Sbjct: 257 ---DASCRLYTYCVKEDGE---TKADFEASNVRYVSRPDFVGTEFDVTGNLDMDVRLGIP 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V NAL A +C +G+ ++ LE + V GR E V T+SR + VDYAH + Sbjct: 311 GLFNVDNALAALCVCSFLGLPKDRIVHALEHIRV-NGRMEIVYTSSRC-TVLVDYAHNAV 368 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 S+E +L +R R++VVFGCGG+R + +R MG+I LAD++I+T DN R E E Sbjct: 369 SMESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRLADLSIITADNSRYEKVED 428 Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I A+I I F+E +R +AIR++I D++ V GKGHE + NG + Sbjct: 429 IMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMIAVIGKGHEDYQEI-NGVRHHF 487 Query: 484 VDCDIIREIL 493 +D ++I E + Sbjct: 488 LDREVIEETI 497 >gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18] Length = 607 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 149/490 (30%), Positives = 240/490 (48%), Gaps = 68/490 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S DSR ++ ++VA+ G K G F A+ GA AI+ +A + A + Sbjct: 88 EVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPV-- 145 Query: 89 NTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+LV +N R+++ A+ +YG + AVTGT+GK++ ++ + R+GL Sbjct: 146 --PVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVF-RTGLG-V 201 Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G TI + +++TTP ++ L+ + V ++E SSH +D HR+DG Sbjct: 202 KTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDG 261 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRA 260 +K FTNL +DH+D H T + YF++K +LF P+ + A+I ADD + +++ A Sbjct: 262 VKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLF---TPERAELAVITADDEWGEKMFSAA 318 Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVE--------------GKDFDFLF 304 G + + + L +V A + + V+ G+ + Sbjct: 319 CEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVDNGAGESVECYT 378 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-------VVPGRFEFVGTNSRGGR 357 LP +F V NA +AA L + DSA L +L VVPGR + + S Sbjct: 379 GLPADFNVSNAALAA-LMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI---SLAPH 434 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VD+AH + L L+ + G++++VFG G+RDQ KRPIMG IA ADI +VTD Sbjct: 435 AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVVTD 494 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----------------KQDV 461 D+P E PE IRA +E+G + R A ++LN + D Sbjct: 495 DDPHGEAPEPIRA--------AVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDA 546 Query: 462 LVVAGKGHET 471 +++AG+GHET Sbjct: 547 ILIAGRGHET 556 >gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1] gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Roseiflexus sp. RS-1] Length = 509 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 142/477 (29%), Positives = 223/477 (46%), Gaps = 53/477 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR + G +FVA G DGH +IPQA+ +GA A+V +D + R Sbjct: 22 EIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERGAAAVV------YEDPAWDGRV 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLS--- 143 P L V N R L+ A+ YG HP + + G +G + F+ + +G + Sbjct: 76 PVPALRVPNARVALAPLAAAFYG-HPGRRMRIVGVTGTDGKTTTTFLTSVALEAGGAITG 134 Query: 144 -----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--Q 196 F+IG + D+R +TP + L ++ G ++ +EA+SH L Sbjct: 135 LMGTVDFKIGE----RMWTNDSRQSTPEAPEVQALLRDMAEAGCSYAVIEATSHALSARW 190 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------LPKESPAIIY 247 +RL G FTN+ ++H+D+H T + Y K RLFE L + A++ Sbjct: 191 NRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFNDAAAPFKQRKIAVVN 250 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 ADD + + + A + R+ + + + V + + + ++ D L Sbjct: 251 ADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRSTRDGLRFRVTTPWGAADARLRLT 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G+F V+NAL A + A G+ L LE++ V GR E + + + VDYAHT Sbjct: 311 GDFNVWNALAALTVACAEGVPLERCLAALERVPGVRGRMERI-EAGQPFTVLVDYAHTPG 369 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426 + E + + +R +T G++I VFG G+RD+ KRP+ G+IA D+ IVTD++PR ED Sbjct: 370 AFEKLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQGEIAGRFCDLVIVTDEDPRLEDRAA 429 Query: 427 -------------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 K E IP +R AIRTA D++++ GKGHE Sbjct: 430 IIAEIAAGAEAVGKRIGETCLCIP------DRALAIRTAFAYARPGDIVLLLGKGHE 480 >gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria IOP40-10] gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria IOP40-10] Length = 512 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 133/409 (32%), Positives = 202/409 (49%), Gaps = 38/409 (9%) Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--- 159 AS YG +++LA VTGT+GK+S ++ + L++ P + I + Sbjct: 98 IASGWYGDPSDSLLAIGVTGTNGKTSCTQWIA-----AALTALHQ-PCAVIGTLGSGMHG 151 Query: 160 ----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 TTP L ++L+ L G V++E SSH L Q R++G FTNL +D Sbjct: 152 HLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQD 211 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272 H+DYH T AY AK +LF + A++ DDA + ++++ RV ++ Y Sbjct: 212 HLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLAG---RVRTIAYGIG 266 Query: 273 ------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + V A +S D D G F V N L G +A Sbjct: 267 DAQTPDADRELVALDVRATATGTAFRLSSSWGDADVEVGTLGAFNVSNLLAVLGSLLAAD 326 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITS--- 381 + + + +L V GR + +G + + +DYAHT ++LE L +R I + Sbjct: 327 VPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAAARG 386 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G+ P Sbjct: 387 GRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAGMTAPDH 446 Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 447 ARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 507 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 141/487 (28%), Positives = 243/487 (49%), Gaps = 47/487 (9%) Query: 1 MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57 MK+ D++ + ++ E +NQ R + ++ +S ++ G+IF+AI G+KEDG+ Sbjct: 1 MKITDILKMGHLNYSEPLNQ---------SRNVKGITDNSNEVRPGYIFIAIKGHKEDGN 51 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116 ++ QAI GA I+ DF+ P L V N RK L A + Y +N Sbjct: 52 IYTQQAILNGAILIIGED-----DFTNLT---VPYLKVKNARKTLGQVAKKFYKDPSKNK 103 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 ++ +TGT+GK+++ F++Q+ ++ G S IG TI + R+ + + AK ++ Sbjct: 104 IMIGITGTNGKTTIGFFIKQLLEKQGYSVSSIG---TIYNEINGKRIQSVNTTPNAKTIN 160 Query: 176 YLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 L + V V E SS GL Q+RL+GI+ F NL DH+DYH T + YF K LF Sbjct: 161 QLLTASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLF 220 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+ L + AII +D + K++ +R G +V++VG + + ++ A V++ Sbjct: 221 EK-LKLDGTAIINYNDRWGKKLTERLTAQGKKVITVGEEP--TNQVQILA-KELNNVSVR 276 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + K+++ PLPG + N +++ + + + V ++ + + GRFE ++ Sbjct: 277 YKNKEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLANK 336 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++L + + + RII VFG G+RD+ KR M + L+ AI Sbjct: 337 -VTVVVDYAHTPDALATSINTAISNGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAI 395 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----------AIRTAIEMLNKQDVLV 463 +T + + ++ I I+K ++E AI+ AI D ++ Sbjct: 396 LTVTELFGSTIDNLYSDYIS-----IQKECQVEEKTSIIMDRTLAIQKAIWEAQSGDWVL 450 Query: 464 VAGKGHE 470 + GKGHE Sbjct: 451 LLGKGHE 457 >gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia PC184] gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia PC184] Length = 515 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 150/497 (30%), Positives = 230/497 (46%), Gaps = 70/497 (14%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFI--------------PQAIAQGAEAIVVSSAY 77 ++ +D+R ++AG +FVA + D F+ P+ +A +A V A Sbjct: 30 QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPAVPVA- 88 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQ 135 L V + AS YG +++LAV TGT+GK+S ++ Sbjct: 89 ---------------LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA- 132 Query: 136 ICQRSGLSSFQIGPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + L++ P + I + TTP L ++L+ L G V++E Sbjct: 133 ----TALTALHQ-PCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAME 187 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SSH L Q R +G FTNL +DH+DYH T AY AK +LF + A+I Sbjct: 188 VSSHALHQGRANGTAFDVAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINR 245 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKD 299 DDA + ++++ RV ++ Y + + V A + D Sbjct: 246 DDAAGRRLLEKLAG---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGD 302 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-- 357 + G F V N L G +A + L +E+L V GR + +G + Sbjct: 303 ANVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPL 362 Query: 358 IYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT ++LE L +R I + GR++ +FGCGGDRD KRP+MG IA LAD + Sbjct: 363 VVIDYAHTPDALEKTLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVV 422 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHE 470 VT DNPRSEDP+ I +++ G+ ++ RIE AI A+ ++DV+V+AGKGHE Sbjct: 423 VTSDNPRSEDPQHIIDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHE 481 Query: 471 TVHIVTNGEKKMSVDCD 487 + G+K+ D D Sbjct: 482 ATQEIM-GKKRTFSDQD 497 >gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus radiotolerans SRS30216] Length = 537 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 162/472 (34%), Positives = 238/472 (50%), Gaps = 52/472 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR ++ G ++ A+ G G F QA A GA A + A + D A + Sbjct: 43 VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGA--DLVAA--AG 98 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ R L A+R++G+ P ++L VTGT+GK++ A V+ + + +G ++ Sbjct: 99 LPALVVDDPRAVLGDLAARIHGR-PGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGL 157 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T I+ D+ TTP L L+ + + GV ++E SSH L QHR+DG+ L Sbjct: 158 LGTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHALVQHRVDGLVLD 217 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAH 261 FTNL +DH+D+H + + YF AK LF + + D A + + + +RA Sbjct: 218 VALFTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRAS 277 Query: 262 ---------NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +A RV V G G HL T+ + D PLPG+F Sbjct: 278 VPVVTVGAGDADWRVTDVRTGRAGSTFHLSG----------TLPGGPVELDLTCPLPGDF 327 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NA +AA + +G A+V L VPGR + V + VDYAHT ++L+ Sbjct: 328 NVANAALAAVAVLHLGPAPAVVAAGLAAAEGVPGRMQTV-VRDGAPLVVVDYAHTPDALD 386 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR- 429 +L+ +R IT GR++ VFG GGDRD+GKRP+MG LAD+A+VTDDNPRSED +R Sbjct: 387 RVLRTLRGITPGRLVAVFGAGGDRDRGKRPLMGAAVAALADVAVVTDDNPRSEDAAAVRA 446 Query: 430 ----------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 AE++ + R A D +++AGKGHET Sbjct: 447 AVLAGARSGPAEVLEVADRAAALDAALARCRGA------GDTVLLAGKGHET 492 >gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus epidermidis M23864:W1] Length = 494 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 221/463 (47%), Gaps = 37/463 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++++++DSR + G IFVA G D H F I QG +VV+ L+ + Sbjct: 23 VDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELE-------GD 75 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V +T + SL A L+ H VTGT+GK+S+A+ + I ++ SS + Sbjct: 76 VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKSSAYL 135 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I+ TTP + L K + +G +++E SSHGL RL G++ Sbjct: 136 GTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRGVEFDV 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNA 263 F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S + A+ Sbjct: 196 AIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGYL---ANVT 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYN 314 V + G + + K + S++G +FD P G F + N Sbjct: 253 PYEVFTYGIDNEAQFMAK--------NINESLQGVEFDLSTPFGDYHVKSPYVGRFNISN 304 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 + A + G ++ + L V GR E + S + +DYAHT++ + ++ Sbjct: 305 IMAAIIAVWSKGATMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKLID 363 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ ++I + G G+RD K P MG +A AD I T DNP ++DP+ + AE+ Sbjct: 364 AVQPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPANDDPKMLTAELAK 422 Query: 435 GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 G ++E +R E IR AI++ D +V+A KG E I+ Sbjct: 423 GATHDNYVEFDDRAEGIRHAIDVAEPGDTVVLASKGREPYQIM 465 >gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudonocardia sp. P1] Length = 534 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 150/460 (32%), Positives = 222/460 (48%), Gaps = 39/460 (8%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99 ++ G +F A+ G + G F QAIA GA A++ + + D S P+LV R Sbjct: 61 VRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGA--DRPEIRHSRLPVLVHPAPR 118 Query: 100 KFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSF 156 + L ++ +YG+ +L VTGTSGK++V ++ +G S+ +G T + Sbjct: 119 EVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLLGTVRTRVQVP 178 Query: 157 AQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ R TTP L + + GVT V++E SSH L R+ G + G+FTN Sbjct: 179 GEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRVGGSRFAVGAFTN 238 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCRVL 268 L +DH+D+H T YF AK RLF ++ DD + +++ R +A + Sbjct: 239 LSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQLASRRPDA----V 294 Query: 269 SVGYQGKFIH----LKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLC 322 +VG H ++ + A + Q +V G LPG + V NALVA Sbjct: 295 TVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVANALVALACL 354 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAH--TSNSLEMILKNIR 377 A GI + + +L V PGR + V G+ + VDYAH + + + + Sbjct: 355 DADGIPPEVAAQGFARLSV-PGRMQRVDA----GQPWLAVVDYAHKPAAVAALLDALRAQ 409 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 R+I V GCGGDRD GKRP+MG A +D +VTDDNPR E+P IR ++ G Sbjct: 410 IHPHARVITVLGCGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPATIRRAMLEGAM 469 Query: 437 --PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P IE G+R AI A+ D +V+AGKGHET Sbjct: 470 HEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKGHET 509 >gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Yersinia pestis D182038] Length = 370 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/322 (37%), Positives = 166/322 (51%), Gaps = 10/322 (3%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S + + L L QG T ++E SSHGL Q R+ + A FTNL RDH+DYH Sbjct: 33 TTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGN 92 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278 +Y AK LF + II ADD + + + A ++ G+ G ++ Sbjct: 93 MTSYEAAKWLLFST--HQSEHKIINADDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLS 150 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 KV N + + + L G F V N LVA + G A +L Sbjct: 151 ANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPH 210 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 L V GR E + + VDYAHT ++LE L R +G++ VFGCGGDRD+GK Sbjct: 211 LQPVCGRMEVFNAPGKP-TVVVDYAHTPDALEKALAAARLHCTGKLWCVFGCGGDRDKGK 269 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK-GNRIEAIRTAIEM 455 RP+MG IA LAD +VTDDNPRSE+P+ I A+I+ G+ G ++ R EA+ +AI Sbjct: 270 RPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQ 329 Query: 456 LNKQDVLVVAGKGHETVHIVTN 477 + DV+++AGKGHE +V N Sbjct: 330 AKEDDVVLIAGKGHEDYQLVGN 351 >gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase [Cupriavidus taiwanensis LMG 19424] Length = 522 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 231/494 (46%), Gaps = 41/494 (8%) Query: 32 EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++S D+R + G +F A ++GN DG +I QAIA GA A+V Y F Sbjct: 31 QLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYIAQAIAAGAGAVV----YEADGFDWPFG 86 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS 144 P L V + A+ +G +P LAVTG T+GK+S + ++ ++ Q +G Sbjct: 87 DAVPHLAVSRLHQLAGPIAAGWHG-NPARGLAVTGITGTNGKTSCSQWLARVLQATGTPC 145 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T Q TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 146 ATIGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAGARAVAMEVSSHGLEQERVAGTH 205 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TNL +DH+DYH + Y AK RLF A+I DDA + ++ A Sbjct: 206 FSVAVLTNLTQDHLDYHGSMAEYEAAKARLFR--WDGLRTAVINRDDAMGQRLLAADAAA 263 Query: 264 ------------GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 G +V G +G ++ V A I + P+ G F Sbjct: 264 VVAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATATGTAFHIDGSFGHAEMATPMIGAF 323 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN----SRGGRIYVDYAHTS 366 V N L G +A G+ + L L V GR E G ++ VDYAHT Sbjct: 324 NVSNLLAVLGAALANGVAWDAAIAALRALAPVEGRMELFGAAGHDAAQAPLAVVDYAHTP 383 Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++LE L +R + +GR+ VFGCGGDRD KRP+MG +A LAD ++T DNPRSE Sbjct: 384 DALEQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAERLADEVVLTSDNPRSE 443 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP+ I I G+ +G +IE AI A+ DV++VAGKGHE + G Sbjct: 444 DPQDILDAIADGMT-ERARGRQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGR 501 Query: 480 KKMSVDCDIIREIL 493 K+ D + +R L Sbjct: 502 KRPFSDREHVRLAL 515 >gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum StLB037] Length = 552 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 133/460 (28%), Positives = 230/460 (50%), Gaps = 45/460 (9%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT--PILVVDN 97 ++AG FVAI G G F A +GA A++ + A I ++T PI++V++ Sbjct: 53 LRAGEAFVAIRGVNRHGAEFAATAAERGAVAVITDAE------GAEIAASTGLPIVIVED 106 Query: 98 TRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 R L ++ +YG P++ +LA TGT+GK+SV+ ++ I Q+G + + Sbjct: 107 PRALLGDLSAWVYGTGPDDDIPQLLATTGTNGKTSVSHLLEGILG-------QLGVVTGL 159 Query: 154 SSFAQD--------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 SS A+ +RLTTP L+ + +GV V+VE S+ L +HR+DG+ Sbjct: 160 SSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEAVAVEVSAQALTRHRVDGLVFD 219 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL DH+D + + YF AK+ LF + ++ D A E++ RA Sbjct: 220 VAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRG--VVCLDSASGAEIVARAEIPVV 277 Query: 266 RVLS--VGYQGKFIHLKKVCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAA 319 +++ + V + +Q+ T + +G+ + P+ G NA +A Sbjct: 278 TIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRALTTVVPVIGRHMAANAGLAI 337 Query: 320 GLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + + G +++ L+ + +PGR + V + G +YVD+ H+ ++ E L + Sbjct: 338 VMLLETGYAWERLVDALDGGRIDASLPGRTQLV-SGPEGPAVYVDFGHSPDAFEKTLAAV 396 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T G+++++FG GDRD KR MG+ A+ +DI +VTD +PR EDP+ IRA ++ G Sbjct: 397 RRVTPGKVVMLFGADGDRDATKRHDMGRTAVLGSDILVVTDHHPRHEDPDAIRAVLVEGA 456 Query: 437 PGFIEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHE 470 +E AI A++++ + D ++ AG GH+ Sbjct: 457 RRARPDAEILEFTPPERAILEAVKLVGEGDAILWAGPGHQ 496 >gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Succinatimonas hippei YIT 12066] Length = 506 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 153/476 (32%), Positives = 221/476 (46%), Gaps = 48/476 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-----SAYSLQDFSA 84 ++ + DSR + +F A G+ DG F+ +A QGA AI+ SA L+D + Sbjct: 28 LSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGAAAIICDYDKDPSAEQLKDVT- 86 Query: 85 TIRSNTPILVVDNTRKFLSL--FASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---- 136 P+L + +K +S+ FAS Y + + +TGT+GKS+V + Q Sbjct: 87 -----IPLL---HLKKGMSVGEFASWFYFSPSSKLRLIGITGTNGKSTVTQLIAQYLALF 138 Query: 137 ---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 C G + P SS TT S I L KAL+ +G + ++E SS G Sbjct: 139 NRKCAVFGTLGYGFLPNLKQSSN------TTLSAIALQKALAEAVKEGADYAALEVSSIG 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + R+DG G+FTNL RDH+DYH+T + Y AK + P + DDA Sbjct: 193 VCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDH--LCLNVDDAMG 250 Query: 254 KEVMKRAHNA----GCRVLSVGYQGKFIH--LKKVCAI---HNKQQVTISVEGKDFDFLF 304 K V A L+V K + L V I H+ ++ I D Sbjct: 251 KTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSFGKGDASL 310 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F N L A + ++ +L+ +L + GR E + R+ VDYAH Sbjct: 311 SLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRMECFYKEGK-PRMIVDYAH 369 Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 T + +E LK R+ T G++ V GCGGDRD+GKRP+M A AD I T DNPR+E Sbjct: 370 TPDGVESALKAARSHTPGGKVWCVLGCGGDRDKGKRPMMAIKACVYADKVIFTSDNPRTE 429 Query: 424 DPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DP +I ++ G+ G + R +AI A + D +VVAGKGHE I+ Sbjct: 430 DPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVVVAGKGHEDYQII 485 >gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 491 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 154/492 (31%), Positives = 230/492 (46%), Gaps = 52/492 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85 +R I V +DSR + G ++ A G G F+ Q + +G A + A + + Sbjct: 18 DRDITSVDNDSRTTKPGGLYAAFPGANVHGASFVTQLVDKGVRAFLTDPAGVEIMREAQV 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-QQICQRSGLSS 144 ++ ILV + R A+++YG + + + +F+ Q G ++ Sbjct: 78 DLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMFGVTGTNGKTTTTFILDAFLQALGHTT 137 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG +T I+ D+ TTP L + L+ + GV S+E SSH L QHR+DG+ Sbjct: 138 GLIGTVATVIAGDRVDSVRTTPEASALHQLLARMRDAGVDTCSMEVSSHALSQHRVDGVH 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 SFTNL +DH+DYH T YF+AK LF ++ ADD K Sbjct: 198 FDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPEFASRG-VVVLADDWARK--------- 247 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYN 314 ++SV I + V + + V+G ++ P LPG F V N Sbjct: 248 ---LVSVSQ----IPVVTVSMNSEDKPDYLVVQGDSWELHTPQGRIPFTPVLPGLFNVTN 300 Query: 315 ALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 +A + + G+ D+ + + ++ VVPGR E V N+ R +DY+HT +++E + Sbjct: 301 TALALAMLLEFGVQFDAVASIANGTEV-VVPGRMEVV--NAEHPRAIIDYSHTPDAIEKV 357 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 L + + ++VV G GGDRD KR MG A AD+ IVTDDNPRSEDP IRA++ Sbjct: 358 LDRL---SGDPVVVVVGAGGDRDSTKRAAMGVAAARGADVVIVTDDNPRSEDPAAIRAQV 414 Query: 433 I-----------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 + H + E NR AIR A+E+ +VVAGKGHET + GE Sbjct: 415 LAGAREAAGARAHTVE---ECENRGTAIRRAVELAGANGTIVVAGKGHETGQEIA-GEVL 470 Query: 482 MSVDCDIIREIL 493 D D RE + Sbjct: 471 PFSDRDKTREAI 482 >gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC 25296] Length = 581 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 150/491 (30%), Positives = 240/491 (48%), Gaps = 70/491 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S DSR ++ ++VA+ G K G F A+ GA AI+ +A + A + Sbjct: 62 EVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLGEAPV-- 119 Query: 89 NTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+LV +N R+++ A+ +YG + AVTGT+GK++ ++ + R+GL Sbjct: 120 --PVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVF-RTGLG-V 175 Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G TI + +++TTP ++ L+ + V ++E SSH +D HR+DG Sbjct: 176 KTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDG 235 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMK-- 258 +K FTNL +DH+D H T + YF +K +LF P+ + A+I ADD + +++ Sbjct: 236 VKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLF---TPERAELAVITADDEWGEKMFSAA 292 Query: 259 -------------RAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFL 303 A AG + + + + KV + ++ V V G+ + Sbjct: 293 CEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGV-GESVECY 351 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-------VVPGRFEFVGTNSRGG 356 LP +F V NA +AA L + DSA L +L VVPGR + + S Sbjct: 352 TGLPADFNVSNAALAA-LMAYLDTDSAERERLLPELASGSALTPVVPGRMQLI---SLAP 407 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VD+AH + L L+ + G++++VFG G+RDQ KRPIMG IA ADI +VT Sbjct: 408 HAIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVVVT 467 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----------------KQD 460 DD+P E PE IRA +E+G + R A ++LN + D Sbjct: 468 DDDPHGEAPEPIRAA--------VEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHD 519 Query: 461 VLVVAGKGHET 471 +++AG+GHET Sbjct: 520 AILIAGRGHET 530 >gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 5701] gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 5701] Length = 508 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 158/509 (31%), Positives = 246/509 (48%), Gaps = 49/509 (9%) Query: 11 FPELINQL-----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 P+L++ L P Q + + +S DSR + AG +F+ + G++ DG F P A+ Sbjct: 1 MPQLLHSLLQDCAVAIPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALE 60 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL---YGKHPENILAVTG 122 +GA A ++ A + Q P+LV+++ ++ +A RL + P LA+ G Sbjct: 61 RGAAAALIGPAAAAQ---CPPGPADPVLVLEDP---VAEWAGRLAASFWHDPSRRLALIG 114 Query: 123 TSGKSSVAS---FVQQICQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKA 173 +G + + ++ + G S+ G P ++++ TT L Sbjct: 115 VTGTNGKTTTTHLIEHLSAGCGKSTALFGTLINRWPGHSVTA-----SHTTAFADVLQGQ 169 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ G ++E SSH LDQ R+ G FTNL +DH+DYH + +AY AK RL Sbjct: 170 LARAVEAGAQLAAMEVSSHALDQRRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARL 229 Query: 234 FE-ELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL---------SVGYQG-KFIHLKK 281 F ELL + A++ DD + + +R + G R+ VG + + L Sbjct: 230 FSSELL--DGSAVVNIDDPWGARLAERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDD 287 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + T+ F PL G F + N L A G+ G+ A +LE + Sbjct: 288 LVFAADGVSGTLITPLGCGAFRSPLVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRG 347 Query: 342 VPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGR E + + + VDYAHT + LE L R G+++ VFGCGGDRD+GKR Sbjct: 348 VPGRMERVMLPEAAELPAVLVDYAHTPDGLENALAACRPFARGQLVCVFGCGGDRDRGKR 407 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEML 456 P M IA LAD +VT DNPR+EDP++I +++ GIP + + +R AI A+ M Sbjct: 408 PQMAAIAARLADRVVVTSDNPRTEDPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMA 467 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 D++++AGKGHE I+ G K+ D Sbjct: 468 GPSDLVLIAGKGHEDYQIL--GTTKVHFD 494 >gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae DSM 12333] Length = 536 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 156/492 (31%), Positives = 238/492 (48%), Gaps = 62/492 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R + G IF A+ G G F A A GA A++ ++ + +A I P+ Sbjct: 41 ITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGASAVLTDASGAAAAEAAGI----PV 96 Query: 93 LVVD-----------NTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA----SFVQQ 135 LV D R+ ++ A+ +YG+ E + AVTGT+GK++ + + Sbjct: 97 LVADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTFAVTGTNGKTTTSFLLAHLLGL 156 Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + +R GL IG I RLTTP L L+++ GVT + +E SSH L Sbjct: 157 LGRRVGL----IGTVELRIGDAVVPARLTTPEAPDLHALLAHMVEAGVTDLVMEVSSHAL 212 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + HR+D ++ +FT+L +DH+D+H + Y+ AK LF + A++ DD + + Sbjct: 213 ELHRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFTPARARR--AVVSVDDEWGR 270 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------- 305 + A AG V ++ +G+ A + V + F P Sbjct: 271 RLAGDARAAGIDVATLATRGEH----AAAAAWTVRDVVAGADAMSFTLTGPGDVALTTSL 326 Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHV-VPGRFEFVGTNSRGGRIYV 360 +PG F V NA +A I G+ +A V+E L L V VPGR E VG R V Sbjct: 327 TMPGAFNVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEVVGAEPR---CVV 383 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AH ++++ + L +R TSGR+ VV G G+RD+GKRP MG+ A+ AD IVTDD+P Sbjct: 384 DFAHNTDAVGIALAELRATTSGRLHVVLGATGERDRGKRPAMGEAAVLGADAVIVTDDDP 443 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGN-------------RIEAIRTAIEMLNKQDVLVVAGK 467 EDP ++RAE++ G E R AI A+ +D ++VAG+ Sbjct: 444 HDEDPAQVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAAAVAGAAPEDTVLVAGR 503 Query: 468 GHETVHIVTNGE 479 GHET+ V E Sbjct: 504 GHETIQEVAGEE 515 >gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Staphylococcus epidermidis VCU121] Length = 494 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 141/477 (29%), Positives = 229/477 (48%), Gaps = 59/477 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++++ ++++DSR + G IFVA G D H F + QG IVV+ QD + + Sbjct: 20 DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNRE---QDLNGDV 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++V +T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 77 TQ----IIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + +G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S+ Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSE 246 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISVEGKDFDFLFPLP-- 307 + A V + G I N Q V S++G F+F P Sbjct: 247 YL---ASVTPYEVFTYG-------------IDNDAQFRAINVEESLQGVKFEFDTPFGSY 290 Query: 308 -------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 G+F + N + A + G ++E ++ L V GR E + S + + Sbjct: 291 QVESPYVGKFNISNIMAAMIAVWSKGATFEEIIEAVKSLEPVEGRLEVLDP-SLPIDLII 349 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT++ + ++ ++ ++I + G G+RD K P MG +A AD I T DNP Sbjct: 350 DYAHTADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNP 408 Query: 421 RSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++DP+ + AE+ G ++E +R E I+ AI++ D +V+A KG E I+ Sbjct: 409 ANDDPKMLTAELAKGATHSNYVEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 465 >gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus caprae C87] Length = 494 Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 137/472 (29%), Positives = 221/472 (46%), Gaps = 49/472 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++++++DSR + G IFVA G D H F I QG +VV+ L+ Sbjct: 20 DKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELE------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++V +T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 74 -GEVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEFSH 246 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------- 307 + A V + G + + K + S++G +FD P Sbjct: 247 YL---ASVTPYEVFTYGIDNEAQFMAK--------NINESLQGVEFDLSTPFGDYRVKSP 295 Query: 308 --GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F + N + A + G ++ + L V GR E + S + +DYAHT Sbjct: 296 YVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYAHT 354 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ + ++ ++ ++I + G G+RD K P MG +A AD I T DNP ++DP Sbjct: 355 ADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPANDDP 413 Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + + AE+ G ++E +R E IR AIE+ D +V+A KG E I+ Sbjct: 414 KMLTAELAKGATHDNYVEFDDRAEGIRHAIEVAEPGDTVVLASKGREPYQIM 465 >gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces viridochromogenes DSM 40736] Length = 506 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 156/480 (32%), Positives = 237/480 (49%), Gaps = 41/480 (8%) Query: 13 ELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL +QL S P E + ++ DSR ++ G ++ A+ G + G F+ QA GA A+ Sbjct: 19 ELADQLGSSAPESAAE--VTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAAV 76 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSV 129 + + + + S P+LVVD+ R + A+ +YG ++L +TGTSGK++ Sbjct: 77 LTDPTGAERAAA----SGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTT 132 Query: 130 ASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 A V+ GL + + G T+ D R+ TTP L + + +GV Sbjct: 133 AYLVE-----GGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEA 187 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 V++E SSH L R+DG G FTNL +H+++H + YF AK +LF PK Sbjct: 188 VAMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRGKL 244 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302 ++ DD Y + ++ A + G+ + V T+ +G+ Sbjct: 245 GVVNVDDEYGRRLVNEATVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISA 304 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359 PLPG F V N L A G+D + + + VPGR E V G+ Y Sbjct: 305 KSPLPGPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDA----GQPYLAV 360 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAH ++++E +L+ +R +T G++ +V GCGGDRD KR MG A LAD A++T DN Sbjct: 361 VDYAHKTDAVESVLRALRKVTEGKLHIVLGCGGDRDTTKREPMGAAAARLADTAVLTSDN 420 Query: 420 PRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 PRSEDP I A ++ G +P + E+G +R AI A+ D ++VAGKGHE Sbjct: 421 PRSEDPLAILATMLQGAASVPAY-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 479 >gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu002] gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase MurE [Mycobacterium tuberculosis SUMu002] Length = 425 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 141/401 (35%), Positives = 200/401 (49%), Gaps = 25/401 (6%) Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 6 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 64 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 65 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 123 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 124 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 183 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +A ++V + H + +Q I G LPG + V N L Sbjct: 184 ADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 239 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ V PGR E + +G VDYAH +L +L + Sbjct: 240 VALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 297 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 298 -AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGA 356 Query: 436 --IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 357 AEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 397 >gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces cf. griseus XylebKG-1] Length = 572 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 237/478 (49%), Gaps = 37/478 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL ++L + E + ++ DSR ++ G ++ A+ G + G F QA GA A++ Sbjct: 68 ELADRLGVEAAGTGE--VTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAAVL 125 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + + + + P+LV ++ R + A+ +YG+ +L +TGTSGK++ A Sbjct: 126 TDPAGAERAAATGL----PVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTA 181 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ + +G + IG T+ D R+ TTP L + + +GV V+ Sbjct: 182 YLVEGGLRAAGRPTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVA 238 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAI 245 +E SSH L R+DG F NL +H+++H + YF AK +LF P+ S + Sbjct: 239 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLF---TPERSHRGV 295 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD Y + ++ + + G+ H + V + + +G+ Sbjct: 296 VNFDDEYGRRLLTESGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARA 355 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361 PLPG F V N L A G+D + + + + VPGR E V G+ Y VD Sbjct: 356 PLPGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDA----GQPYLAVVD 411 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH ++++E +L+++R +T GR+ +V GCGGDRD KR MG A LAD A++T DNPR Sbjct: 412 YAHKTDAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 471 Query: 422 SEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 SEDP I A ++ G +P E+G+ + AI A+ D ++VAGKGHE Sbjct: 472 SEDPLAILAAMLSGAAEVP-VHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHE 528 >gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus NCTC 2665] Length = 585 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 151/506 (29%), Positives = 232/506 (45%), Gaps = 83/506 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR ++ G ++VA+ G + G F A+ GA ++ +A + ++ Sbjct: 55 VTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 113 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV----ASFVQQICQRSGL 142 P+L VD R A+R+YG + ++ VTGT+GK++ A+ ++ + +RSG+ Sbjct: 114 VPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFLSAALLEALGRRSGI 173 Query: 143 SSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 T I + ++ + LTTP L ++ + + V +E SSH + R+ Sbjct: 174 VG-----TILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIA 228 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---VM 257 G++ FTNL +DH+D H + Q YF AK LF+ + A+I D M Sbjct: 229 GLRYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPA--RTDHAVITLDGGEGPRWGVAM 286 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-----------------QQVTI--SVEGK 298 RA A L++G A H+ + T+ + G+ Sbjct: 287 ARAAGAPVTTLALGPAAP---TPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGR 343 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--------------PG 344 + LPG F V NA +A L + A+ EHL+ L V PG Sbjct: 344 ELRASVGLPGRFNVANAALAVLLVL-----HAVGEEHLDALAAVLDVPAGEGPLAAAVPG 398 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKR 399 R E VG R VD+AH + + L+++ T GR ++VFG GDRD+ KR Sbjct: 399 RMEVVG---REPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKR 455 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------------GNR 445 P+MG IA AD+ IVTDD P SEDP IRA I+ G ++ +R Sbjct: 456 PVMGAIAARAADVVIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVIEEVADR 515 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHET 471 AIR A+E+ QD +++AG+GHET Sbjct: 516 FAAIRRAVELAGPQDGILLAGRGHET 541 >gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia vietnamiensis G4] gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia vietnamiensis G4] Length = 512 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 55/488 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R +QAG +F+ + D FI A+A+GA A++ Y + +A Sbjct: 30 QLHADTRSLQAGDVFLGYAVDGADNRAFIADAVARGAAAVL----YQPEGLAAAPAVPV- 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQ---- 138 V + AS YG + +LA VTGT+GK+S ++ Q C Sbjct: 85 AFAVPGLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSCTQWIAAALTALHQPCALIGT 144 Query: 139 -RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 SG+ Q+ PT TTP L ++L+ L G V++E SSH L Q Sbjct: 145 LGSGMPG-QLVPTG----------FTTPDAPQLQRSLARLRDAGAKAVAMEVSSHALHQG 193 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R++G FTNL +DH+DYH+T AY AK +LF + A++ DDA + ++ Sbjct: 194 RVNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFTWRGLRA--AVVNRDDAAGRRLL 251 Query: 258 KRAHNAGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 ++ RV ++ Y + + V A + + D G Sbjct: 252 EKLAG---RVRTIAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEVGTLG 308 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTS 366 F V N L G +A + + + +L V GR + +G + + +DYAHT Sbjct: 309 TFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVIDYAHTP 368 Query: 367 NSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++L+ L+ +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSE Sbjct: 369 DALDKTLEALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSE 428 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP++I +I+ G+ ++ RIE AI A+ ++DV+++AGKGHE + G+ Sbjct: 429 DPQRIIDQIVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GK 486 Query: 480 KKMSVDCD 487 K+ D D Sbjct: 487 KRTFSDQD 494 >gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei F0204] Length = 489 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 145/491 (29%), Positives = 237/491 (48%), Gaps = 32/491 (6%) Query: 17 QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 +L+ F + +I + DSR + IF + G DGH I +AIA GA IV+ + Sbjct: 2 KLTDFFENVPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGA--IVIVHS 59 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQ 135 ++ + I T I V D F + S Y H + VTGT+GKSSVA ++ Sbjct: 60 EPIEKINPDI---TYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRN 116 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVE 188 I QI PT+ + + + + + +P+ + L + G+ + + E Sbjct: 117 ILN-------QIEPTAYVGTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYE 169 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 ASS +DQ RLD I FTNL DH+DYH T YFNAK +LF++ L +E+ AI+ Sbjct: 170 ASSIAIDQGRLDAIDFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQ-LKEEAIAIVNV 228 Query: 249 DDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 DD MK + +V + G Y+ + + + + + T+ + D+ L Sbjct: 229 DDPSG---MKIVQDTQAKVFTYGIDYEADY-RVTDYHLLKDSTRFTLHINDHDYRLETNL 284 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F +YN + A G+ + +++ L+ V GR E + + + + VD+AHT+ Sbjct: 285 IARFNIYNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERI-QDGQPFNLIVDFAHTA 343 Query: 367 NSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + +E + + +IT RII + G G RD KRPI G+I D+ I+T+D+ R E Sbjct: 344 DGIEKVCQYASSITPKDCRIIAITGSAGKRDTAKRPIFGEILDHYCDMIILTEDDSRGES 403 Query: 425 PEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 +I +I GI ++ +R +AIR ++E+ ++ D ++V GKG+E G + Sbjct: 404 VREIAEDIAKGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKGNEKFIAREFGRESY 463 Query: 483 SVDCDIIREIL 493 D I E+L Sbjct: 464 EGDDVICHEVL 474 >gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens TC1] gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens TC1] Length = 536 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 138/479 (28%), Positives = 229/479 (47%), Gaps = 40/479 (8%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P ++R + ++ +SR ++ G +++A+ G G F+PQA+ GA A+V A + Q Sbjct: 31 PDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAVAVVTDDAGARQ- 89 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------ILAVTGTSGKSSVASF 132 + P+L+V R + A+ +Y P + T+ + S Sbjct: 90 LALAGEQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTNGKTTTTYFINSL 149 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 ++ + ++ GL IG ++ + LTTP + L+ + +G+ S+E SS Sbjct: 150 LRALEKKPGL----IGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLDAASMEVSS 205 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H + HR+DG+ FTNL +DH+D H + YF K LF + A++ DD Sbjct: 206 HAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTAGRARH--AVVTVDDD 263 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNK---QQVTIS-VEGKDFDFLFPL 306 + +++ + A + + G KV +I + + + +G+ L Sbjct: 264 WGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGRTLRVHTGL 323 Query: 307 PGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 PG+F V NA +A + +A G+D A + H VPGR + + T VD+ Sbjct: 324 PGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLISTEPAS---VVDF 380 Query: 363 AHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 AH ++L L+ +R+ G R+IVVFG G RD+GKRP MG IA LAD+ I++DD+P Sbjct: 381 AHNPDALSRALEAVRSPREGSRVIVVFGATGQRDKGKRPTMGAIAARLADVVIISDDDPH 440 Query: 422 SEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ED IRAE++ G IE R AI+ A++M +D +++AG+GHE Sbjct: 441 DEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTILIAGRGHE 499 >gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Shewanella amazonensis SB2B] Length = 487 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 141/445 (31%), Positives = 208/445 (46%), Gaps = 17/445 (3%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + AG +F+A+ G K DG ++ A A+GA A +V + + + I Sbjct: 26 DSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAFF 85 Query: 96 DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 R+ +S A + Y + ++ VTGT+GK+SV+ + Q+ + G + +G Sbjct: 86 QLNRQ-VSAVARQYYALTRGKLRVVGVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNG 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + QD TT + + L QG ++E SSHGL Q R++ + FTNL Sbjct: 145 LWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNL 204 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSV 270 RDH+DYH Y AK RLF S +I DD ++ GC + Sbjct: 205 SRDHLDYHGDMDNYAAAKRRLFA--FGSLSARVINLDDKVGEQWFD---GMGCATGFSCL 259 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G+ + H + G L G F + N L A +G Sbjct: 260 GHAKADWRFENAHFHHAGFSANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQLGYQVP 319 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 ++ KL VPGR E G + VDYAHT +++E LK R G + +VFGC Sbjct: 320 DLVAAAAKLEAVPGRMECF-PRKDGVSLVVDYAHTPDAIEQALKAARHHCEGALWIVFGC 378 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRI 446 GGDRD+GKRP+M + A AD ++T DN RSEDP I ++ G+ E+ +R+ Sbjct: 379 GGDRDKGKRPLMAEAAEAFADCLVLTSDNARSEDPAVILEDMKAGLDA-PERALCMVDRV 437 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHET 471 AIR A+ M D++++AGKGHET Sbjct: 438 AAIRHAVSMAKPGDLILLAGKGHET 462 >gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus tetradius ATCC 35098] Length = 483 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 143/497 (28%), Positives = 242/497 (48%), Gaps = 40/497 (8%) Query: 11 FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F ++I+ +S I + + I +++DSR FVAI G+ DGH +I AI +GA Sbjct: 10 FEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKKGAS 69 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127 I+ + + ++ + IR N P RK L+ ++ +Y ++AVTG++GK+ Sbjct: 70 LIIHTEDVTCEEGISYIRVNDP-------RKALAQISNLIYDFPSKKMELVAVTGSNGKT 122 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + + + + S IG T ++ D+ + TTP + + L+ + + Sbjct: 123 TTSRLIAFLMGEIFGDSASIG---TNNAHVGDDIIPTSNTTPDITEVNRILAKCLEKNIH 179 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 H+++EASSHGLDQ RL G+ + G FTNL +H+DYH+T YF AKM LFE K + Sbjct: 180 HLALEASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN--AKNTL 237 Query: 244 AIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A I DD Y +KE+ + S Y+ + I K+ IS + + Sbjct: 238 ANI--DDPYGKRAKELFPKTITFAIDEESADYRAEDIV---------KKDGKISFKIRGV 286 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +F+ +++YN L A +G + E +K + RFE++ N G I + Sbjct: 287 EFVLNKIANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFEYI-ENDLGINIIL 345 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT + E + +++ II VFG GDR+ R ++G +++T D+P Sbjct: 346 DFAHTPRAYEALFESVP--KGSNIIAVFGINGDRNSEFRRLIGNACGKYKVFSVLTTDDP 403 Query: 421 RSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 + ++ + I EII G+ ++ + R +A+R AI+M D + + GKG E Sbjct: 404 KFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKGEENFIKFH 463 Query: 477 NGEKKMSVDCDIIREIL 493 EK + + +RE+L Sbjct: 464 GNEKTPYSERETLREVL 480 >gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho melanesiensis BI429] Length = 491 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 229/485 (47%), Gaps = 57/485 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +SS+S+ I+ +F+ G D H + GAE +V + P Sbjct: 28 ISSNSKDIKENTLFICRKGFNFDSHKIVDDVARNGAEIFIVEEE----------IEDYPY 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V ++R S+ A + K E ++ VTGT+GK++ I + G+ G Sbjct: 78 ILVVDSRIAESIIADVFFQKPYEKLITFGVTGTNGKTTSVHLFHHIMHQFGIKGSISG-- 135 Query: 151 STISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + ++ D + TTPS I + K + + + ++E SSH L Q+R++ I+ Sbjct: 136 TVLNDIMGDKFYHHNTTPSAIEITKNMFKTVIEDGKYYAMEVSSHALSQYRVESIRYDIV 195 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+ RDH+D+HQT + Y AK+ + L P AI+ + E++ RV Sbjct: 196 GITNITRDHLDFHQTFENYKRAKLHILNLLKP-NGIAIV------NHELIHDIPKKNIRV 248 Query: 268 LSVG---------------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 ++ G + G F LK K+ V+ L G+F Sbjct: 249 VTFGTDNNSDYVIHEIISNWSGIFFKLK--TPFGEKKVVS------------QLLGDFNA 294 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM 371 +N + + IG D V+ + V GR E + + G I +D+AHT ++LE Sbjct: 295 FNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVIDFAHTPDALEK 354 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + +IR +T GRII VFG GG D GKRP+MG+IA +DI I+T D+PR EDP KI + Sbjct: 355 AILSIRKLTKGRIITVFGAGGQSDVGKRPMMGEIASKYSDICIITTDDPRGEDPVKIIKD 414 Query: 432 IIHG-IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I G + G + +R EAI TAI + N+ D++++AG+GHE + K D D+ Sbjct: 415 IEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAGRGHEPYQVFDENYKVPFKDRDV 474 Query: 489 IREIL 493 +I+ Sbjct: 475 AIDII 479 >gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bryantella formatexigens DSM 14469] Length = 524 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/477 (29%), Positives = 226/477 (47%), Gaps = 28/477 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ +DSR ++ G +F I G DGH + + +GA + + Sbjct: 59 EVTDIVNDSRKVREGCLFFCIKGAVADGHKYAAEVAQKGA-------GVLVVQDDVQVPG 111 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V ++R ++L A+ YG HP L V G +G + I + ++G Sbjct: 112 DVTVIKVADSRYAMALIAAAWYG-HPAEKLKVIGITGTKGKTTTTYMIKSILEAAGHKVG 170 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI + D + TTP + K + ++ G V +E SS GL HR G Sbjct: 171 LIGTIEAIIGDKVIPASNTTPESTTIQKYFAEMAEAGCDCVVMEVSSQGLMLHRTVGFTF 230 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL DHI H+ + Y K LF++ I ADDA+ + +++ H Sbjct: 231 EIGIFTNLEPDHIGPAEHENFEDYLRCKAMLFKQC----RHGIFNADDAHLEAILE-GHT 285 Query: 263 AGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320 G + F ++ + + V GK +F +PG+F +YN+L A Sbjct: 286 CDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVTGKRNFFVEIDIPGKFSIYNSLAAIA 345 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +C G++ ++ L+K V GR E + + + +DYAH + SLE +L ++ Sbjct: 346 VCDYFGVEEEKMIAALKKAKV-KGRIEMIKVSDEF-TLMIDYAHNAMSLESLLTTLKEYN 403 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 GR++ VFGCGG+R + +R MG+++ AD I+T DNPR E+PE I A+I GI Sbjct: 404 PGRLVCVFGCGGNRSRARRFEMGEVSGKYADFTIITSDNPRYEEPEAIIADIETGIAKTD 463 Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +I+ +R EAI AI DV+V+AGKGHE + + M +I+EIL Sbjct: 464 GKYIKITDRKEAIAYAIHHGQPGDVIVLAGKGHEDYQEICGVKHPMDERV-LIKEIL 519 >gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 358 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 167/327 (51%), Gaps = 25/327 (7%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S + + +LS G S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ Sbjct: 25 TTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQS 84 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + Y AK RLF EL +I ADD + + +A ++V F KV Sbjct: 85 MENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KV 134 Query: 283 CAIHNKQQVTISVEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + I K D F PL G F V N L+ ++ G Sbjct: 135 GSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLEN 194 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L + L V GR E + ++ + VDYAHT ++LE L R G + +FGCG Sbjct: 195 LLATAKSLKGVYGRMEMIQYPNKP-TVIVDYAHTPDALEKALIAAREHCQGELWCIFGCG 253 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEA 448 GDRD+GKRP+M ++A A+ IVT DNPR+E +I A+I+ G + G +R +A Sbjct: 254 GDRDRGKRPLMAQVAEQFAETIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQA 313 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475 I+ AIE + DV+++AGKGHE I+ Sbjct: 314 IQFAIESAVENDVILIAGKGHEHYQII 340 >gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. m3-13] Length = 418 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 47/443 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKLQ +LI L + + + +I+ + DSR + G +F I G DGH F Sbjct: 1 MKLQ--------QLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQF 52 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117 +A+ +GA AI+ + P++VV +T + +++ A + + H ++ Sbjct: 53 AQEAVNKGAVAIISEKPLDVA---------VPVIVVPDTMRAMAILADVFFQQPTHKLHL 103 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++ ++ I Q + IG I + + TTP + L + Sbjct: 104 IGVTGTNGKTTTTHIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQ 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + V V +E SSH L R+ G FTNL +DH+DYH+T + Y AK LF Sbjct: 164 MVENKVDTVVMEVSSHALHMGRVYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSS 223 Query: 237 L-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 L L K A++ ADD S ++ KRA +V++ G + + I K V Sbjct: 224 LGNSYNLAKPKYAVLNADDPAS-DIYKRA--TAAQVITYG-------INETSDIRAKN-V 272 Query: 292 TISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 S +G FD ++ L G+F VYN L A I ++ +E + V Sbjct: 273 KTSAKGTTFDLVYDNKVVPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGV 332 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 PGRFE + + + VDYAHT +SLE +LK + ++ I + GCGGDRD+ KRP+M Sbjct: 333 PGRFEAIEA-GQDFTVIVDYAHTPDSLENVLKTTKQLSQNNIYCIVGCGGDRDRSKRPLM 391 Query: 403 GKIALDLADIAIVTDDNPRSEDP 425 +A++ A AI T DNPRSE+P Sbjct: 392 AAVAVNYASKAIFTSDNPRSENP 414 >gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mariprofundus ferrooxydans PV-1] gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mariprofundus ferrooxydans PV-1] Length = 488 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 226/462 (48%), Gaps = 46/462 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + DSR+++ G+ + + ++ ++ A QGA AI+ ++ S+ Sbjct: 19 IMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAIIA--------VGVSVTSD 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L + + ++ L RL+ + +TGT GK+SVA + R L+ +Q Sbjct: 71 LPVLHLASMQQA-GLLLRRLFRTEEARTHFYGITGTDGKTSVAWML-----REALTRYQP 124 Query: 148 GPTSTISSF----AQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 P + + A D+ L TTPS + + LS + GV V+ E SSHG+ Q R+ Sbjct: 125 KPVWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACEISSHGIAQERI 184 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI +TN+G DH+ H + Y K + + AD A ++ + Sbjct: 185 AGIDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVVANADHA---DIREH 241 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYN- 314 A C + G ++ V ++ + S EG+ PL G+F N Sbjct: 242 APEHAC------WYGHGLYRDDVDLAWEQELPGLLRLKSAEGEVVIEDIPL-GDFHAENV 294 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A VA L +++ I A + + L ++ PGR + V G++Y+DYAHT +L+ L+ Sbjct: 295 ACVALTLMVSMAIPLADLPKLLGRISAPPGRMQEVTAGY--GQVYIDYAHTPEALDRCLQ 352 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 R +T R++VVFGCGG+RD+ KRP MG IA++ AD+ +T DNPR E P I +EI Sbjct: 353 AARKLTRARLMVVFGCGGERDREKRPQMGAIAVEQADLVWITSDNPRGEMPAVIASEIEQ 412 Query: 435 GI--PGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G+ P E + +R +AI AI L + D+L++AGKGHE Sbjct: 413 GMSQPYAAEVRLQLDRDKAIGEAIATLAEGDLLIIAGKGHEA 454 >gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991] gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991] Length = 484 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 139/451 (30%), Positives = 224/451 (49%), Gaps = 34/451 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S DSR ++ +FVAI I +A+ +GA + ++ Sbjct: 30 RIVRGISDDSREVEQDMLFVAIKATAMKKE-HILEALTKGAVVLCEKQPFA--------- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC--QRSGLSS 144 + I + ++ L L LYG++ +AV+GT+GK+SVAS++ Q+ Q++ + Sbjct: 80 -DANIYEAASLKQKLILLLDTLYGRYEACQCIAVSGTNGKTSVASYIAQLLYMQKARVMV 138 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G + F + + TTP I LAK + +TH+ +E SSH + Q R+ I+ Sbjct: 139 IGTGFVKGETIFFETSN-TTPGLIALAKYFDIARQKQITHIVMEVSSHAIAQERIARIRF 197 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263 A FTN+ DH+DYH T+ Y K +L L K+S IIY AD Y ++ H Sbjct: 198 DAVVFTNITADHLDYHITKTHYRFTKFKLANYL--KKSGVIIYNADYEY---MLPLVHMQ 252 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R +S G I ++ V + ++ + S++G + L G VYN A Sbjct: 253 SHRCVSYGLGAAHIPIEHV--VLSESDIRFSLQG--YKIRAHLLGLMNVYNVAAALTFMR 308 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 ++ + E +EKL V GR E V ++++DYAHT+ +L+ +L + + GR Sbjct: 309 INDVEYEQLQEDVEKLRAVKGRLEVVYQGK--FQVWIDYAHTAAALKEVLSFAKQVAKGR 366 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----EKIRAEIIHGIPGF 439 +I + GCGG+RD KRPIM +IA+ +D+AI T DNPR E + + AE F Sbjct: 367 VISIVGCGGNRDVKKRPIMAEIAVKYSDVAIYTSDNPRFERVCDILKDMHAERFLNACVF 426 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AI+ A+++ D++V+ GKG E Sbjct: 427 ---EHRYYAIKHAVKIAQNSDIIVITGKGSE 454 >gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 515 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 148/501 (29%), Positives = 233/501 (46%), Gaps = 44/501 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ------ 80 + +++EV DSR G +FV + G + D H F+P + G +V + Sbjct: 20 DTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFVPDVLKAGVRVLVTERGIEEELKKAKE 79 Query: 81 --DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135 + S +L + R L+L ++ +G +P + G +G + ++ Sbjct: 80 EGGLTEEDLSEVTVLQTGDGRHALALLSAARFG-YPATKMVTIGVTGTKGKTTTTHMIKT 138 Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + +G IG T T I TTP L +A + ++ G ++ +E SS G+ Sbjct: 139 ILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQLHQAFAQMADSGCQYMIMEVSSQGI 198 Query: 195 DQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 HR+DGI G FTN+ DHI D H Y K RL L ++ +D++ Sbjct: 199 KMHRVDGITFDYGIFTNISPDHIGPDEHADFAEYLYCKSRL----LNMCRIGLVNRNDSH 254 Query: 253 SKEVMKRAHNAGCRVLSV------------GYQGKFIHLKKVCAIHNKQQV--TISVEGK 298 ++++K +A C + + G G V + V V+G+ Sbjct: 255 FEDIIK---DADCELYTYSVTEERGGLHGSGESGADFTASDVRYVSQPDFVGTEFDVKGR 311 Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + D +PG F V NAL A +C +G+ V LE + V GR E V T++R Sbjct: 312 YEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALEHIRV-NGRMEIVHTSARC-T 369 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VDYAH + S+E +L +R R++VVFGCGG+R + +R MG+I LAD++IVT Sbjct: 370 VLVDYAHNAVSMESLLTTLRQYHPKRLVVVFGCGGNRSKDRRYTMGEIGGRLADLSIVTA 429 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DN R E E I A+I I F+E +R EAI +I D++ V GKGHE Sbjct: 430 DNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSISHAMPGDMIAVIGKGHEDYQ 489 Query: 474 IVTNGEKKMSVDCDIIREILG 494 + NG + +D ++I E++G Sbjct: 490 EI-NGVRHHFLDREVIEEVVG 509 >gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. RS9917] gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. RS9917] Length = 503 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 247/485 (50%), Gaps = 32/485 (6%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P Q I ++ DSR + G +F+ + G + DG F P+A+A GA A V+ A + Sbjct: 16 WPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWPRALADGAAAAVIGPAAAAV 75 Query: 81 DFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 P+LVV + +++ A+ + + P + ++ VTGT+GK++ ++ + Sbjct: 76 QPPG---PEDPVLVVPEPVAQWIGELAAAFW-QRPSSRMTLIGVTGTNGKTTTTHLIEHL 131 Query: 137 CQRSGLSSFQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 ++G + G P +I++ TT L L+ + G ++E S Sbjct: 132 AAQAGRPAALFGTLVNRWPGHSITATH-----TTAFADRLQAQLAEAVAGGTQVAAMEVS 186 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKES-PAIIYA 248 SH L+Q R+ G + FTNL +DH+DYH + QAYF AK LF E LL + A++ Sbjct: 187 SHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASDGVRAVVTM 246 Query: 249 DDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + +++ +R + R L + + V + I+ +G+ F PL Sbjct: 247 DDPWGRQLAERLGDRCWRCSLEPDQEAELTMTDLVMRSSGVEGRLITPKGEG-RFASPLV 305 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYA 363 G F + N + A + G+ L+L+ L VPGR E V S + VDYA Sbjct: 306 GRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLPAVLVDYA 365 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT + L+ L+ R GR+I VFGCGGDRD+GKRP M IA LAD +VT DNPR+E Sbjct: 366 HTPDGLKNALEACRPFVEGRLICVFGCGGDRDRGKRPQMASIAAKLADRVVVTSDNPRTE 425 Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 DP++I A+++ G+P + +G+R AI A+ D++++AGKGHE I+ G + Sbjct: 426 DPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGKGHEDYQIL--GTE 483 Query: 481 KMSVD 485 K+ D Sbjct: 484 KVHFD 488 >gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM 1279] Length = 481 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 148/477 (31%), Positives = 229/477 (48%), Gaps = 41/477 (8%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64 P L +F ++ V+ DSR +Q G++FVAI G DGH +IPQAI Sbjct: 1 MPTLQELFGLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122 GA A+V L + P L V + R L+ ++ +G + +L VTG Sbjct: 61 QNGAVAVVGMRELHL---------SVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSY 176 + GK++VA + + QR+ +G ST+ + L TTP + + L Sbjct: 112 SKGKTTVAVLLHHLLQRA---RPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHR 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 G +E SSH L R+ G++ G FTNL +DH+D H + + YF K +L E Sbjct: 169 FVQAGCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKLLE- 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + A++ +D+ +++ + R S G QG + V + + +S Sbjct: 228 ---RSRFAVVNSDNPWTQTLRGRPQT-----WSYGQQGDWQAHNLVESSTGLEFEVVSPM 279 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G+ F P+ G F NAL A +G+ + E L VPGR + V + Sbjct: 280 GR-FAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLV--QAAPF 336 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 R+ VD+AHT SLE L+ +R T GR++VV G G++D +R +G++A LAD+AI T Sbjct: 337 RVVVDFAHTGASLEAALQTLRPTTQGRLLVVIGAAGNQDPSRRVGIGQVAARLADLAIFT 396 Query: 417 DDNPRSEDPEKIRAEI--IHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +++ R+E E I + HG P ++ +R EAIR AI+ D L+ +GKGHE Sbjct: 397 EEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSGKGHE 453 >gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Faecalibacterium prausnitzii A2-165] Length = 492 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 148/486 (30%), Positives = 233/486 (47%), Gaps = 36/486 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + P + Q S+ + ++ ++ DSR G FV IVG + D H F Sbjct: 1 MKLEQLL-EGVPFTLVQGSL------DTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118 A+G +V+ D + ++ V+++R ++L + L+G ++ Sbjct: 54 ADCAAKGVSVLVIQ-----HDIDLSAMPGVTVVKVESSRYAMALMSGNLFGNPSRQMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177 VTGT GK++ ++ + + +G IG Q+ TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQF 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 G +E SS GL R+ G+ G FTNL DHI H+T + Y + K +LF Sbjct: 169 LDAGCDVALMEVSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFR 228 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVT 292 ++ DD + E + H C++++ G K + + C + H+ V Sbjct: 229 RC----DVGVVNIDDE-NTEALLEGHT--CKLVTYGRSEKADYRAEGCELLRTHDFLGVA 281 Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 V G+D D +PGEF VYNAL A + +G+ A + E L K VV GR E V Sbjct: 282 FHVSGRDNMDVRVNMPGEFSVYNALAALAVGKVLGLPDAAIHEGLGKC-VVKGRVELVPI 340 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 S+ I +DYAH S E +L +R R++VVFGCGG+R + +R MG+ +AD Sbjct: 341 -SKKFTILLDYAHNEVSTESLLTTLRAYHPHRLVVVFGCGGNRSKLRRYGMGETCAKMAD 399 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +I+T+DN R E E I A+I G+ F+E +R++A+ A++ + D++ V Sbjct: 400 FSILTEDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVI 459 Query: 466 GKGHET 471 GKGHET Sbjct: 460 GKGHET 465 >gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii DSM 20548] Length = 477 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 140/507 (27%), Positives = 238/507 (46%), Gaps = 54/507 (10%) Query: 11 FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F ++I+ +S I + ++ I +V++DSR + G IFVAI G+ DGH +I AI +G+ Sbjct: 4 FEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEKGSS 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127 I+ ++ ++ + I+ P RK L+ ++ +Y +++AVTG++GK+ Sbjct: 64 LIIHTADIKREEGISYIKVTDP-------RKTLAQISNLIYDFPSKKMDLVAVTGSNGKT 116 Query: 128 SVASFVQ-----------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + + + I + + +I PTS TTP + + L+ Sbjct: 117 TTSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSN----------TTPDITEVNRILAK 166 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + H+++EASSHGLDQ RL G+ + G FTNL +H+DYH+T YF AKM LFE Sbjct: 167 CLDKNIHHLALEASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFEN 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTI 293 I DD Y K+ + N + + Y+ + I K+ I Sbjct: 227 A----KTTIANIDDPYGKKAKELFSNTVTFAIDEKNADYRAEDIR---------KEDGKI 273 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 S + K +F+ +++YN L A +G + +K V RFE++ N Sbjct: 274 SFKIKGCEFVIRKIANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFEYI-END 332 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G I +D+AHT + E + +++ + I VFG GDR+ R ++G A Sbjct: 333 LGINIILDFAHTPRAYEALFESVP--EGAKKIAVFGINGDRNAHFRRLIGNACGKFDTFA 390 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 ++T D+P+ +D + I EII G+ ++ K +R +A+ A D + + GKG Sbjct: 391 VLTTDDPKFDDIDHINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKGE 450 Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496 E EK + + I++ L I Sbjct: 451 ENFMKYHGNEKTPYSERETIKKALARI 477 >gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC 51172] Length = 476 Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 145/504 (28%), Positives = 235/504 (46%), Gaps = 43/504 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 +KL DL+ K I L + + K+ V+++S + G+IFVA+ G+ DGH +I Sbjct: 2 IKLSDLVRK-----IEYLDV--KHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYI 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI +GA+A+V + ++ IR P + ++ F S +++ V Sbjct: 55 DEAIKKGAKAVVHTEDVEYREDITYIRVFDPRQTLAEISNLITDFPSEKL-----SVIGV 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKA 173 TGT+GK++ + + + ++ GP + I + + TTP + + Sbjct: 110 TGTNGKTTTSKLIAYLIEKV------FGPCANIGTDGANVGGEIIETSNTTPDITEINRI 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L +G+ +V++EASSHGL Q RL G++ G F NL +H+DYH+T AYF AKM L Sbjct: 164 LEKCVEKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMIL 223 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 FE I DD + K+A LS G K +++ + ++ Sbjct: 224 FE----NSEITIANIDDPWG----KKAVELFPTTLSFGKDEK-ANIRATDISKTDKGISF 274 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++G DF +F++ N L A ++G + E + V RFE++ N Sbjct: 275 KIDG--VDFFIRTIADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFEYI-END 331 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 +G I VD+AHT + E I K++ + I VFG GDR+ R ++GK D A Sbjct: 332 KGLNIIVDFAHTPRAFEEIFKSLP--RDKKKIAVFGIQGDRNPEFRNLIGKTVSDYGIYA 389 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 IVT D+P+ + E I +I+ G+ + +R EAI + M D ++ GKG Sbjct: 390 IVTTDDPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMGKGE 449 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 E + EK + IRE L Sbjct: 450 ENFIKLHGNEKTPWNEKATIRETL 473 >gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria AMMD] gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ambifaria AMMD] Length = 512 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 203/409 (49%), Gaps = 38/409 (9%) Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--- 159 AS YG +++LA VTGT+GK+S ++ + L++ P + I + Sbjct: 98 IASGWYGDPSDSMLAIGVTGTNGKTSCTQWIA-----AALTALHQ-PCAVIGTLGSGMHG 151 Query: 160 ----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 TTP L ++L+ L G V++E SSH L Q R++G FTNL +D Sbjct: 152 HLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQD 211 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--- 272 H+DYH T AY AK +LF + A++ DDA + ++++ AG RV ++ Y Sbjct: 212 HLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKL--AG-RVRTIAYGIG 266 Query: 273 ------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + + V A + D D G F V N L G +A Sbjct: 267 DAQAPDADRELVALDVRATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLGSLLAAD 326 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTITS--- 381 + + + +L V GR + +G + + +DYAHT ++LE L +R I + Sbjct: 327 VPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAAARG 386 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439 GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I ++I G+ P Sbjct: 387 GRLVCMFGCGGDRDATKRPLMGVIAERLADEVVVTSDNPRSEDPQRIIDQVIAGMTAPDH 446 Query: 440 IEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 447 ARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia MC0-3] gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia MC0-3] Length = 515 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 153/483 (31%), Positives = 235/483 (48%), Gaps = 42/483 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D F+ A+A+GA A++ +A Sbjct: 30 QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQRSGL 142 + + + AS YG +++LA VTGT+GK+S ++ Q C G Sbjct: 90 AVPALD--QLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + S F TTP L ++L+ L G V++E SSH L Q R +G Sbjct: 148 LGTGMPGQLVPSGF------TTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGT 201 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T AY AK +LF + A+I DDA + ++++ Sbjct: 202 AFDVAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGRRLLEKLAG 259 Query: 263 AGCRVLSVGY----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVY 313 RV ++ Y +++ A+ + VT + D D G F V Sbjct: 260 ---RVRTIAYGIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVS 316 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371 N L G +A + L +E+L V GR + +G + + +DYAHT ++LE Sbjct: 317 NLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 376 Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I Sbjct: 377 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHI 436 Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +++ G+ ++ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 437 IDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFS 494 Query: 485 DCD 487 D D Sbjct: 495 DQD 497 >gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Butyrivibrio crossotus DSM 2876] Length = 490 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 145/457 (31%), Positives = 223/457 (48%), Gaps = 32/457 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT--IR 87 I + DSR A +FV + G DGH +I +G AIVV +D T ++ Sbjct: 23 IENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAGKGVLAIVVQ-----KDIEVTEELK 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSS 144 T I D TR L+L ++ + +P L G +G + ++ I ++ + + Sbjct: 78 DITLIKTAD-TRYALALMSAAFF-DYPAKKLKTIGITGTKGKTTTTFMIRDILEKCNIKA 135 Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG TI ++ TTP + K S + G + V +E SS L +R GI Sbjct: 136 GLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQMVEAGCSCVVMEVSSQALMLNRTAGIL 195 Query: 204 LIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G FTN+ DHI + H + + Y K RLF++ + I AD Y ++M+ H Sbjct: 196 FDIGVFTNIEPDHIGPNEHASFEEYMECKSRLFKQCVH----GIGNADSEYFDKIME-GH 250 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYNALV 317 C + + G + K + + + IH +T S ++ + LPGEF VYN+L Sbjct: 251 T--CTLETYGIKNKADLKAENIRYIHEGGNITTSYNTTGTRELNIKLTLPGEFSVYNSLC 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +D L+L+ L V GR E V S + +DYAH + SLE +L +R Sbjct: 309 AIAVSEHFNVDDKLLLDALYNTRV-AGRVEPVKV-SDDFIVMIDYAHNAMSLESLLSTLR 366 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 RI+ +FGCGG+R + +R MG+++ +AD+ I+T DNPR EDP I +I GI Sbjct: 367 EYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTIITSDNPRDEDPVLIMQDIETGIK 426 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ +R EA++ AIE K D++V+AGKGHE Sbjct: 427 KTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKGHE 463 >gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia ubonensis Bu] Length = 512 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 226/475 (47%), Gaps = 29/475 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +F+A + D FI A+A+GA A++ D A + Sbjct: 30 QLHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAAVLYQP-----DGLAAAPAAPV 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + AS YG +++ AV TGT+GK+S ++ IG Sbjct: 85 ALAVPALNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWIAAALTALDRPCALIGT 144 Query: 150 -TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 S + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 145 LGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTNL +DH+DYH+T AY AK +LF + A++ DDA ++ + + R + Sbjct: 205 FTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGSRLLA-SLSGQVRTI 261 Query: 269 SVGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + G + + V A + D D G F V N L G Sbjct: 262 AYGIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVGTLGTFNVSNLLAVLGT 321 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRTI 379 +A + L + +L V GR + +G + + +DYAHT ++LE L +R I Sbjct: 322 LLAADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 381 Query: 380 T---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 G ++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP++I +I+ G+ Sbjct: 382 AVARGGALVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAGM 441 Query: 437 PGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + RIE AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 442 TA-PDNARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494 >gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB74] Length = 470 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 230/461 (49%), Gaps = 42/461 (9%) Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 G F QA + GA A + A + + +A P+LVV + R + A+R+YG + Sbjct: 14 GADFAAQAASLGAVAALTDPAGAERVLAA----GRPVLVVGDPRGRMGALAARIYGNPGD 69 Query: 116 NIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIY 169 +L +TGTSGK++ A ++ + +G S+ IG T+ + D RL TTP Sbjct: 70 GLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIG---TVETRIGDERLKSERTTPEATD 126 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L + + +GV V++E SSH L R+DG+ F NL +H+++H + YF A Sbjct: 127 LQALFAVMRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQA 186 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCA 284 K +LF + ++ DDAY + ++ A + G ++ + + ++ + Sbjct: 187 KAQLFTRARSRRG--VVNRDDAYGRRLVAEAEVPIVTFSAEGHPDADWRAEDVEIRATDS 244 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + +G + PLPG F V N L A GID E + + VPG Sbjct: 245 VFT----VVGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPG 300 Query: 345 RFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 R E V G+ Y VDYAH ++++E +L+++R +T GR+ VV GCGGDRD KR Sbjct: 301 RLERVDE----GQPYLAVVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGP 356 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTA 452 MG A LAD A++T DNPRSEDP I A ++ G +P E+G+ + AI Sbjct: 357 MGAAAARLADTAVLTSDNPRSEDPLAILAAMLAGAAEVP-VHERGDVLVEADRAAAIAAV 415 Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D +++AGKGHE V NG + D ++++E + Sbjct: 416 VARAEPGDTVLIAGKGHEQGQDV-NGVVRPFDDREVLKEAI 455 >gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 491 Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 134/472 (28%), Positives = 237/472 (50%), Gaps = 32/472 (6%) Query: 14 LINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 L+ +L +Q ++++ V DSR ++ G +F+ I G DGH F+P +A+GA+ ++ Sbjct: 12 LLEKLEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLI 71 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS- 131 V A + + +++V +TR ++ ++ +G E + + T K + Sbjct: 72 VEEAVEAPE-------DVTVILVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTT 124 Query: 132 -FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ I + +G +++G TI + D + TTP + + ++ G V Sbjct: 125 YMVKSILENAG---YKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVV 181 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SS GL HR G G FTN+ DHI ++ + F+ +R LL + I+ Sbjct: 182 MEVSSQGLMLHRTQGFVFDFGIFTNIEPDHIGPNEHKD--FDDYLRCKSLLLKQCKVGIV 239 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDF 302 DD + +++++ H C + + G+ + + + + K + IS K DF Sbjct: 240 NRDDEHFEKIIE-GHT--CSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHV 296 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 +PG+F +YN+L A +C + +L+ L K+ V GR E V S + +DY Sbjct: 297 EIDIPGKFSIYNSLTAIAICRHFKVSEENILKAL-KVAKVKGRIEMVKV-SDDFTLMIDY 354 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH + +LE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR Sbjct: 355 AHNAMALESLLTTLKEYHPHRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNPRD 414 Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E+P+ I +I G+ ++E +R EAI AI D++V+AGKGHE Sbjct: 415 EEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKGHE 466 >gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter concisus 13826] gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter concisus 13826] Length = 427 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 219/472 (46%), Gaps = 67/472 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DS + G FV N + F+ A GA+ I T+ + Sbjct: 10 ITDDSNECEQGAYFVQTTANAK----FVEHAAKNGAKII-------------TLEECKKL 52 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L +D K I+ +TGT+GK++ A+ + + + G + G + T Sbjct: 53 LKIDENLK----------------IVGITGTNGKTTTAAAIYETLRNLGK---KCGLSGT 93 Query: 153 ISSFAQ----DNRLTTPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +F + D++ T S I K LSYL S QG + +E SSH + Q R++ + Sbjct: 94 RGAFIEGEQIDDKALTTSAIL--KTLSYLKAASEQGCEYFVMEVSSHAIAQKRIESLNFA 151 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH++ + Y K F++ ES +I DD K K A+ Sbjct: 152 LKIFTNLTQDHLDYHKSMEEYARVKSSFFDD----ESVKLINIDDGGVKFNPKNAY---- 203 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG-LCIA 324 ++ F + V + + I D + L GEF +YN + A G +C+ Sbjct: 204 -TYAIKKPASFAPI--VYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLL 260 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 D+A + + + K V GR E V T+ + VD+AHT + +E +L ++R + + Sbjct: 261 ERPDAAALSKAISKFKGVSGRMEVVSTDPL---VIVDFAHTPDGIEKVLNSLRHLN---L 314 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441 I VFG GGDRD+ KRP MG IA A I IVT DNPRSE+PE I EI G+ I Sbjct: 315 IAVFGAGGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNENLIR 374 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 NR EAI AI L LV+ GKG E + G K D +++ E+L Sbjct: 375 NANRKEAIALAISKLEPGWALVILGKGDEPYQEI-KGVKHPFSDKEVVIELL 425 >gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 358 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 167/327 (51%), Gaps = 25/327 (7%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S + + +LS G S+E SSHGL QHR++ + A FTNL RDH+DYHQ+ Sbjct: 25 TTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQS 84 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + Y AK RLF EL +I ADD + + +A ++V F KV Sbjct: 85 MENYAAAKKRLFTEL--DTQIKVINADDEIGYQWLTELPDA----IAVSMNADF----KV 134 Query: 283 CAIHNKQQVTISVEGKDFDFLF-----------PLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + I K D F PL G F V N L+ ++ G Sbjct: 135 GSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLEN 194 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L + L V GR E + ++ + VDYAHT ++LE L R G + +FGCG Sbjct: 195 LLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDALEKALIAAREHCQGELWCIFGCG 253 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEA 448 GDRD+GKRP+M ++A A+ IVT DNPR+E +I A+I+ G + G +R +A Sbjct: 254 GDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQA 313 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIV 475 I+ AIE + DV+++AGKGHE I+ Sbjct: 314 IQFAIESAVENDVILIAGKGHEHYQII 340 >gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Methylibium petroleiphilum PM1] Length = 503 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 145/470 (30%), Positives = 222/470 (47%), Gaps = 31/470 (6%) Query: 24 QW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +W +E + +DSR +Q G F+A G+ DG F+ A+A GA +V + + Sbjct: 13 RWLQEWTTGTLRTDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEA----EGV 68 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQ----I 136 A + I + + A +G+ + ++A TGT+GK+S A + Q + Sbjct: 69 DAHGFDDARIGALPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLL 128 Query: 137 CQRSGL-SSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +R G+ + IG P + LTTP P+ L L ++ G ++EASS G Sbjct: 129 GRRCGVVGTLGIGEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIG 188 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +HRL +++ FTN RDH+DYH + AY+ AK LF P A + DDA Sbjct: 189 IVEHRLAALRIEVALFTNFTRDHLDYHGSMDAYWAAKRVLFG--WPGLKAAAVNLDDAQG 246 Query: 254 KEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 E+ + H S+ + + + + T+ G L G++ Sbjct: 247 AELARSLAGHVPELWTYSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYN 306 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 N L G A+G+ A + + +L VPGR + V ++ + VDYAHT ++ Sbjct: 307 AANLLAVIGGLRALGVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDA 366 Query: 369 LEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 LE L +R + + GR++ VFGCGG+RD KRP+M +A LAD I T DNPR E P Sbjct: 367 LEKALGALRPLAAARGGRLLCVFGCGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAP 426 Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I ++ G IE +R AI AI +DVL++AGKGHE Sbjct: 427 AAILVDVAAGFAAPAAVEMIE--DRRAAIARAIGSAEARDVLLIAGKGHE 474 >gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 492 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 149/487 (30%), Positives = 240/487 (49%), Gaps = 38/487 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+ L+ + P + Q S+ + +I+++ DSR G +FV IVG + D H F Sbjct: 1 MKLEQLL-EGVPFTLAQGSL------DTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFA 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 A+G A+V+ D + ++ V+++R ++L ++ L+G ++ Sbjct: 54 ADCAAKGVSALVIQ-----HDIDLSALPGVTVVKVESSRYAMALMSANLFGNPSRKMTMI 108 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSY 176 VTGT GK++ ++ + + +G IG T+ I + TTP L K Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIG-TNGIYYMGRHKETANTTPESYELQKTFRE 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234 G +E SS GL R+ G+ G FTNL DHI H+T + Y + K +LF Sbjct: 168 FLDAGCDTALMEVSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLF 227 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAIHNKQQV 291 + ++ DD + E + H C++++ G + + + ++ H+ V Sbjct: 228 KRC----DVGVVNIDDE-NTEALLEGHT--CKLITYGRAEQADYRETGFELLRTHDFLGV 280 Query: 292 TISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V GKD D +PGEF VYNAL A + +G+ + + L K VV GR E V Sbjct: 281 KFHVTGKDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDQAIHDGLGKC-VVKGRVELVP 339 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S+ I +DYAH S E +L +R R++VVFGCGG+R + +R MG+I +A Sbjct: 340 I-SKKFTILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMA 398 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D +I+T+DN R E E I A+I G+ F+E +R++A+ A++ + D++ V Sbjct: 399 DFSILTEDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAV 458 Query: 465 AGKGHET 471 GKGHET Sbjct: 459 IGKGHET 465 >gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC 35243] gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris 28-1] gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mobiluncus mulieris ATCC 35239] Length = 516 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 134/466 (28%), Positives = 222/466 (47%), Gaps = 48/466 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R ++ G +F+A+ G G F P AI++GA+A++ +A P++ V Sbjct: 46 DNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAA----GLDLVANPEVPVITV 101 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS- 151 + A+ +G +P N L + G +G + + ++ + R G + +G Sbjct: 102 PDVPHAAGRAAAMAWG-NPANHLRLWGVTGTNGKTTTTYLLRHLLHRVGKLAALVGTVEV 160 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I + + +TTP + + + + + +E SSH L R+D ++ F N Sbjct: 161 AIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHALGLGRVDPLRFRVAGFCN 220 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L DH+D+H + + YF K LF E + +I DD + + + ++ G Sbjct: 221 LTHDHLDFHHSMEDYFQTKASLFTER--RSDRQVIIVDDDWGRRLAEQLERMG------- 271 Query: 272 YQGKFIHLKKVCAIHNKQQVTIS-------------VEGKDFDFLFPLPGEFQVYNALVA 318 Q F+ L Q +I+ +GK +PG F N +A Sbjct: 272 -QHDFVTLS-TTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPGRFNAVNTALA 329 Query: 319 -----AGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 GL ++ + + +L HL + VPGR E + R + VD+AH +L+ Sbjct: 330 IVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR---VIVDFAHNPGALK 386 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ +R T+GR+ +VFG G RD KRPI+G+IA +LAD +TDD+P EDP KIRA Sbjct: 387 SLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYLTDDDPHEEDPGKIRA 446 Query: 431 EIIHGI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 E+ G+ PG ++E R AI+ AI+ QD +V+AG+GHET+ Sbjct: 447 EVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTVVIAGRGHETL 492 >gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ralstonia eutropha H16] gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Ralstonia eutropha H16] Length = 520 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 161/494 (32%), Positives = 229/494 (46%), Gaps = 43/494 (8%) Query: 32 EVSSDSRHIQAGWIFVA-IVGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ D+R + G +F A ++GN DG L+I QAIA GA AIV Y F Sbjct: 31 QLTGDTRRLARGDVFFAYVLGNARLATDGRLYIAQAIAAGAGAIV----YEADGFDWPFS 86 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS 144 P L V + + A+ +G +P LAVTG T+GK+S + ++ ++ Q +G Sbjct: 87 DVVPHLAVSHLHQLAGPIAAGWHG-NPVRGLAVTGITGTNGKTSCSQWLARVLQAAGTPC 145 Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG T Q TTP + L +L+ L G V++E SSHGL+Q R+ G Sbjct: 146 ATIGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTH 205 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TNL +DH+DYH + Y AK LF A++ DDA + ++ A Sbjct: 206 FSVAVLTNLTQDHLDYHGSMAEYEAAKESLFR--WDGLRTAVVNRDDAMGQRLLAADAAA 263 Query: 264 GCRVLSVGY-------------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + Y +G+++ V A I + P+ G F Sbjct: 264 IGAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATPTGTAFHIDGSFGSAEMATPMIGAF 323 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTS 366 V N L G +A G+ + L L V GR E G + GG VDYAHT Sbjct: 324 NVSNLLAVLGAALANGVAWDAAIAALRALTPVEGRMELFG--AAGGPDAPLAVVDYAHTP 381 Query: 367 NSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 ++L L +R + +GR+ VFGCGGDRD KRP+MG +A AD I+T DNPRSE Sbjct: 382 DALAQTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAEREADEVILTSDNPRSE 441 Query: 424 DPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 DP+ I I G+ + +IE AI A+ DV++VAGKGHE + G Sbjct: 442 DPQDILDAIADGM-AVRARARQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEI-QGR 499 Query: 480 KKMSVDCDIIREIL 493 K+ D + +R L Sbjct: 500 KRPFSDREHVRLAL 513 >gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Thermus thermophilus HB8] Length = 482 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 146/487 (29%), Positives = 231/487 (47%), Gaps = 56/487 (11%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64 P L ++F + E + ++ DSR ++ G++FVA+ G DGH F+P+A+ Sbjct: 1 MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122 A+GA A+V +L P L V + R+ L+L A R +G+ +L VTG Sbjct: 61 ARGAVAVVGERPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNR-----LTTPSPIYLAKALSY 176 + GKS+ AS + + +R+ S + ST+ ++ R TTP + L Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALL---STVGLRLGEEARPPVGHFTTPEAPEVYAFLRE 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE 235 + +G+ +E SSH L R++G+ G F N DH+D+H T +AYF AK L E Sbjct: 169 AADRGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVE 228 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + A++ + + +R H LS G G+ ++ + + + Sbjct: 229 ----RSDLAVLARSLPHFPRLAQRPH------LSFGEGGE-VYAEGLRETPEGLAFRLHT 277 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + PL G + + NAL A+ +A+G+ VLE L VPGR E V Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKAPF- 336 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 R+ +D+AHT SLE LK +R T GR+++V G G+RD +R +G++A LAD Sbjct: 337 -RVVIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFF 395 Query: 416 TDDNPRSED--------PEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 T+++ R ED + RAE + +P +R EAI AI D +++A Sbjct: 396 TEEDHRGEDLFAILEAMAQAARAEGGVYELVP------DREEAILKAILEARPGDTVLLA 449 Query: 466 GKGHETV 472 GKGHE Sbjct: 450 GKGHEAT 456 >gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Nocardia farcinica IFM 10152] Length = 536 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 233/465 (50%), Gaps = 35/465 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87 + + S +Q G +F A+ G G F A+A+GA A+ + A L + Sbjct: 53 VTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVFTDAEGARVLDGLT---- 108 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 P+LV + R+ L ++ +YG+ + + + +TGTSGK++ + V+ +GLS+ Sbjct: 109 --VPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTSYLVEAGLAAAGLSTA 166 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T I + LTTP L + + QGV V +E SSH L R+DG++ Sbjct: 167 LIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEVSSHALALGRVDGVRF 226 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNA 263 G+FTNL +DH+D+H + YF AK RLFE P + A++ DDA+ + + + A Sbjct: 227 DVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCVDDAWGRRLAE--GLA 284 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +S + + V + +Q+ T + + LPG + V NAL+A +C Sbjct: 285 APITVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPGRYNVANALLAVAVCA 344 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMILKNIRTITS 381 A D A+ L + VPGR + V RG VDYAH +LE ++ +R + Sbjct: 345 AARADPAVAAPALATVD-VPGRMQRV---ERGQDFLAVVDYAHKPAALESVIATLREHLA 400 Query: 382 -------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 GR+ VV G GGDRD GKR +MG AD+ ++TDDNPR+EDP IRA + Sbjct: 401 AADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRTEDPATIRAALRA 460 Query: 435 G---IPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G +P + E G+R AI A+ + D ++VAGKGHET Sbjct: 461 GALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHET 505 >gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia sp. TJI49] Length = 513 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 139/415 (33%), Positives = 207/415 (49%), Gaps = 49/415 (11%) Query: 105 FASRLYGKHPENILA--VTGTSGKSSVASFV-------QQICQ-----RSGLSSFQIGPT 150 AS YG +++LA VTGT+GK+S ++ Q C SG+ Q+ PT Sbjct: 98 IASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGTLGSGMPG-QLVPT 156 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 TTP L ++L+ LS+ G V++E SSH L Q R++G FT Sbjct: 157 G----------FTTPDAPQLQRSLAQLSAAGAKAVAMEVSSHALHQGRVNGTAFDIAVFT 206 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL +DH+DYH T AY AK +LF + A++ DDA + ++++ RV ++ Sbjct: 207 NLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVVNRDDAAGRRLLEKLAG---RVRTI 261 Query: 271 GY-----QGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVYNALVAAG 320 Y Q +++ A+ + T + D D G F V N L G Sbjct: 262 AYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEVGTLGTFNVSNLLAVLG 321 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMILKNIRT 378 +A + L + +L V GR + +G + + +DYAHT ++LE L +R Sbjct: 322 ALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLVVIDYAHTPDALEKTLDALRP 381 Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I +I+ G Sbjct: 382 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQAIIDQIVAG 441 Query: 436 I--PGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + P + +R AI A+ ++DV+V+AGKGHE + G+K+ D D Sbjct: 442 MTAPDRARRTEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 495 >gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Kitasatospora setae KM-6054] Length = 514 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 158/489 (32%), Positives = 236/489 (48%), Gaps = 36/489 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ DSR ++ G ++VA G G F A A GA A++ +A + +A + Sbjct: 38 EVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVAVLTDAAGAELAAAAGV-- 95 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LVVD+ R+ + A+ +YG E +L + TGT+GK++ + V+ + +G Sbjct: 96 --PLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTTTSYLVEGGLRGAGRLPGV 153 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IG T+ + R+ TTP L L+ + G V +E SSH L R DG+ Sbjct: 154 IG---TVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVMEVSSHALVYGRTDGV 210 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 F NL +H+D+H + Y+ AK RLF++ K + DD+Y + + A Sbjct: 211 VYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQG--KSRRGVANRDDSYGRRLAGEARI 268 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAA 319 + G + V T V G+ D PLPG F V NAL A Sbjct: 269 PMTTFSAAGDPAA--DWRAVDVRPGPSGSTFRVLGPNGEQADAAVPLPGLFNVSNALGAI 326 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNI 376 + G++ A + + + VPGR E V G+ Y VDYAH ++L +L ++ Sbjct: 327 TALVVAGVELADAVAGVAAVPGVPGRLEEVDA----GQDYVAVVDYAHKPDALSSVLASL 382 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R +T GR+ VV GCGGDRD KR MG IA LAD A++T DNPRSED I A ++ G Sbjct: 383 REVTKGRLHVVVGCGGDRDPYKRGPMGAIAARLADTAVLTSDNPRSEDALAILATMLSGA 442 Query: 437 PGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 E+ +R EAI A+ + D ++VAGKGHE V GE + D + Sbjct: 443 AEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKGHELGQYV-KGEVRPFDDRQV 501 Query: 489 IREILGLIL 497 +R + I+ Sbjct: 502 LRTAIEQIM 510 >gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis F0421] Length = 564 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 160/517 (30%), Positives = 244/517 (47%), Gaps = 72/517 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +++ + DSR +QAG +F A G DG +I AI GA AIV + L ++A + Sbjct: 61 DTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQN--ELPSYAAGV 118 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V R +S F + Y ++ ++ VTGT GKSS SF+ Q+ + L+ Sbjct: 119 C----YVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLLR---LAH 171 Query: 145 FQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD--Q 196 + G ST+S D + TTP + + + L+ + G VE+SSHGL Sbjct: 172 KRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGLSPLT 231 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----------LPKESPAI 245 RL+ + AG F N+ ++H+++H T + Y K LF +L +P S + Sbjct: 232 ARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVP--SFGV 289 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------ 299 + ADD S E A C SV KK + N+ Q I+V K+ Sbjct: 290 VNADDP-SAEYFYAATKQPCYSFSVNTA------KKTAFLKNELQGVIAVNIKEDSNGIQ 342 Query: 300 FDFL-----------FPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346 FD PL G F V N L A+ L ++ + L ++ L+KL + GR Sbjct: 343 FDIFESGKSESIHARAPLAGLFNVQN-LCASLLTVSSILQKPLAELIPLLQKLEPITGRM 401 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMG 403 + + + +DYAHT +S +M++ I+ + G++IVVFG GG+RD KRP G Sbjct: 402 CKI-QEGQPFEVLIDYAHTPSSFQMLMPPIKDRIAKQGGKLIVVFGSGGERDTKKRPEQG 460 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEML 456 +IA D+ I+ D++PR EDP + I G P FI +R AIR A + Sbjct: 461 RIAAAYCDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSELFIIP-DRKAAIRKAFSLA 519 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 N D +++ GKGHE I NG S + +I R +L Sbjct: 520 NPHDAVLLLGKGHENTIIYKNGAIPYSEE-EIARTLL 555 >gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia AU 1054] gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia HI2424] gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia AU 1054] gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Burkholderia cenocepacia HI2424] Length = 515 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 149/483 (30%), Positives = 234/483 (48%), Gaps = 42/483 (8%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R ++AG +FVA + D F+ A+A+GA A++ +A Sbjct: 30 QLHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVAL 89 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + + + AS YG +++LAV TGT+GK+S ++ + L++ P Sbjct: 90 AVPALD--QLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIA-----TALTALHQ-P 141 Query: 150 TSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + I + TTP L ++L+ L G V++E SSH L Q R++G Sbjct: 142 CAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGT 201 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +DH+DYH T AY AK +LF + A+I DDA + ++++ Sbjct: 202 AFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRA--AVINRDDAAGRRLLEKLAG 259 Query: 263 AGCRVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 RV ++ Y + + V A + D + G F V Sbjct: 260 ---RVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVS 316 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM 371 N L G +A + L +E+L V GR + +G + + +DYAHT ++LE Sbjct: 317 NLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEK 376 Query: 372 ILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L +R I + GR++ +FGCGGDRD KRP+MG IA LAD +VT DNPRSEDP+ I Sbjct: 377 TLDALRPIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHI 436 Query: 429 RAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 +++ G+ ++ RIE AI A+ ++DV+V+AGKGHE + G+K+ Sbjct: 437 IDQVVAGMTA-PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFS 494 Query: 485 DCD 487 D D Sbjct: 495 DQD 497 >gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium HF0010_08B07] Length = 464 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 134/453 (29%), Positives = 224/453 (49%), Gaps = 30/453 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V ++S++++ +F+++ G G ++ A A+ I++ S S TI I Sbjct: 14 VVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDS-------SETIDLPKVI 62 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + D +L H + L +TGT+GK+S SF+ QI + + + + Sbjct: 63 KIKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKH---ASSG 119 Query: 152 TISSFAQD-----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+ +F D N LTT P+++ +S + ++ EASS G+D++RL G+K+ Sbjct: 120 TLGTFINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKIDH 179 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 FTN+ RDH+DYH + + Y +AK +L K + A+ + D+ S+ + K Sbjct: 180 AIFTNISRDHLDYHGSLKKYIDAKFKLISNSKAK-TVAVNFDDEIISRHLRKMYSKETFT 238 Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + S + F + K N + + + GK F + +F +YN ++ + Sbjct: 239 ISSKNIESDIFFRVLKFYEDGNIEFLAETPWGK-FQAASKIESKFNLYNLFLSLPYFQYV 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 D +E L + GR + IY+DYAH+ +LE + K + ++I Sbjct: 298 NNDCEDFFAQVENLSLPYGRL----NKTEKENIYIDYAHSPKALESVCKYLYKKKKNKLI 353 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---K 442 +VFG GG+RD+GKR MG+IA + VT DNPR+EDP +I II GI G + + Sbjct: 354 IVFGAGGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGTDKICIE 413 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R AI+ AI L ++D+L++AGKGHE IV Sbjct: 414 LDRSCAIKNAINELGEEDILLIAGKGHEKKQIV 446 >gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Planctomyces brasiliensis DSM 5305] gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Planctomyces brasiliensis DSM 5305] Length = 504 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 234/476 (49%), Gaps = 31/476 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++++ SR +FVA+ G+ + ++ QA AQGA I+ + L D + TP Sbjct: 33 DIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAAGILTD--FPLSDLA------TP 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +V N R+ L L G+ E + VTGT+GK++V ++ I + + + +G Sbjct: 85 QCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKTTVTWMLRSIVKAANENCGLLGT 144 Query: 150 T--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 S + LTTP A+ + + G T ++E SSH +DQ RL G+ L G Sbjct: 145 IEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAAAIEVSSHAIDQDRLSGVSLAGG 204 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+ DH+DYH + Y K R+ LL ++P ++ DD + ++ Sbjct: 205 IITNITHDHLDYHGSLSKYAEVKARI-ANLLQDDAPLVVNGDDCNIRNLLPHLPP---ET 260 Query: 268 LSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++VG+ + I +++ +++ EG P+PG VYNA AA L A Sbjct: 261 ITVGFDKRNSYRIEIQEQTLQGTAFRLSPGTEGAVLR--CPVPGRHNVYNAAFAAVLAQA 318 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 G + L L PGR + V T + +VDYAHT +++ L+++R++T GR+ Sbjct: 319 AGYSLESISAGLASLVPPPGRLQPVET-CQPFSCFVDYAHTPDAIAQTLQSLRSVTKGRL 377 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFI 440 I +FG GG+RD+ KRP M + A + ADI ++T DN R E +I EI G P Sbjct: 378 ICLFGAGGERDREKRPRMARAA-EQADIVVLTADNSRREPTAQILEEIQAGFSDAAPEVF 436 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +R +AI+ A+++ D +++ GKGHE + G+++ D D + E+ I Sbjct: 437 VNADRSQAIQLAVKLAEPGDCVLILGKGHEKTQEIA-GQRR---DFDDVAEVCASI 488 >gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Thermus thermophilus HB27] Length = 482 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 145/487 (29%), Positives = 231/487 (47%), Gaps = 56/487 (11%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAI 64 P L ++F + E + ++ DSR ++ G++FVA+ G DGH F+P+A+ Sbjct: 1 MPTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEAL 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTG 122 A+GA A+V +L P L V + R+ L+L A R +G+ +L VTG Sbjct: 61 ARGAVAVVGEKPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNR-----LTTPSPIYLAKALSY 176 + GKS+ AS + + +R+ S + ST+ ++ R TTP + L Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALL---STVGLRLGEEARPPVGHFTTPEAPEVYAFLRE 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE 235 + +G+ +E SSH L R++G+ G F N DH+D+H T +AYF AK L E Sbjct: 169 AADRGLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVE 228 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + A++ + + ++ H LS G G+ ++ + + + Sbjct: 229 ----RSDLAVLARSLPHFPRLAQKPH------LSFGEGGE-VYAEGLRETPEGLAFRLHT 277 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + PL G + + NAL A+ +A+G+ VLE L VPGR E V Sbjct: 278 PWGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVVLKAPF- 336 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 R+ +D+AHT SLE LK +R T GR+++V G G+RD +R +G++A LAD Sbjct: 337 -RVVIDFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFF 395 Query: 416 TDDNPRSED--------PEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 T+++ R ED + RAE + +P +R EAI AI D +++A Sbjct: 396 TEEDHRGEDLFAILEAMAQAARAEGGVYELVP------DREEAILKAILEARPGDTVLLA 449 Query: 466 GKGHETV 472 GKGHE Sbjct: 450 GKGHEAT 456 >gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM 10507] Length = 485 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 223/459 (48%), Gaps = 37/459 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +V DSR +Q G +F+ I G DGH F+P + +GA +VV + Sbjct: 22 EVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKGAGVLVVEEKVEAPE------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 + +++V +TR ++ ++ +G HP L G +G + V+ I + +G + Sbjct: 75 HVTVILVKDTRYAMACISAAYFG-HPARRLKTIGVTGTKGKTTTTYMVKSILENAG---Y 130 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + D + TTP + K ++ G V +E SS L HR G Sbjct: 131 RVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEMADAGCDCVVMEVSSQALMLHRTAG 190 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + G FTN+ DHI + H+ Q Y K L + I+ DD + ++++K Sbjct: 191 FEFDFGIFTNIEPDHIGPNEHRDFQHYLECKSMLLRQC----KVGIVNRDDKHFEQIIK- 245 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNA 315 H C + + G+ K + + + K + I + + +F +PG+F +YN+ Sbjct: 246 GHT--CALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRGMMNFQVEIDIPGKFSIYNS 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +C + ++ L ++ V GR E + + + +DYAH + +LE +L Sbjct: 304 LTAIAICRHFKVSEKDIVNAL-RVAKVKGRIEMIKVSDEF-TLMIDYAHNAMALESLLTT 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R R++ +FGCGG+R + +R MG+ + LAD+ I+T DNPR E P+ I +I G Sbjct: 362 LREYHPHRLVCLFGCGGNRSKLRRYEMGETSGRLADLTIITSDNPRYEKPQAIIDDIKVG 421 Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I +IE +R EAI AI D++++AGKGHE Sbjct: 422 ISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKGHE 460 >gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Staphylococcus capitis SK14] Length = 496 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 221/474 (46%), Gaps = 51/474 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++++++DSR + G IFVA G D H F I QG +VV+ L Sbjct: 20 DKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELELD------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRS---- 140 +VV +T + SL A L+ H VTGT+GK+S+A+ + I ++ Sbjct: 74 -GEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLD 195 G + FQI T T + TTP + L K + +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLS 186 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAY 252 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD + Sbjct: 187 LGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDF 246 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----- 307 S + A V + G + + K + S++G +FDF P Sbjct: 247 SHYL---ASVTPYEVFTYGIDNEAQFMAK--------NIDESLQGVEFDFSTPFGDYRVK 295 Query: 308 ----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G F + N + A + G ++ + L V GR E + S + +DYA Sbjct: 296 SPYVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPVEGRLEVLDP-SLPIDLIIDYA 354 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 HT++ + ++ ++ ++I + G G+RD K P MG +A AD I T DNP ++ Sbjct: 355 HTADGMNKLIDAVKPFVKQKLIFLVGMAGERDMTKTPEMGSVAC-RADYVIFTPDNPAND 413 Query: 424 DPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 DP+ + AE+ G ++E +R E I+ AI++ D +V+A KG E I+ Sbjct: 414 DPKMLTAELAKGATHDNYVEFDDRAEGIKHAIDVAEPGDTVVLASKGREPYQIM 467 >gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 484 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 135/413 (32%), Positives = 207/413 (50%), Gaps = 39/413 (9%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++V+N R+ + + I + +TGT+GK++ + I + SG + +IG Sbjct: 77 PHILVENARRTFGMICRNFFNIDFSKIKSIGITGTNGKTTTNYLIDSILRVSGYKTIRIG 136 Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T + +N TTP + + ++ +G + V +E SSH LDQ R+ G+ Sbjct: 137 TTEYVIVDEKIEANN--TTPGIYDIFEMVAKGVKKGASAVCMEVSSHALDQDRVYGLNFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK------EVMKR 259 FTNL DH+DYH+T + Y+ +K +LF + K A I D Y K E+ K Sbjct: 195 VAVFTNLTGDHLDYHKTMEHYYQSKKKLFTKEYSKN--AAINIDYDYGKRLYNEVEIAKY 252 Query: 260 AHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + G V+ V Y I+ C ++ +V IS+ L G + N L Sbjct: 253 SFSKGKGDVGVVDVSYSLDGIN----CRVNIGDEV-ISLNSH-------LVGRHNLENIL 300 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A +GI ++ +E+ VPGR E N G +VDYAHT ++L+ +L+ + Sbjct: 301 GAVTATYILGISKDDIIRGVEQFKNVPGRLEKFEKN--GAYFFVDYAHTDDALKNVLEAL 358 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + GR+I VFGCGGDRD+ KRP M K+A +DI IVT DNPR+EDP I EI+ G Sbjct: 359 KGFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVTSDNPRTEDPNAIIDEILTGF 418 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ RI AI+ A + D++++AGKGHE I+ G+ K D Sbjct: 419 ENRSKVLVDPDRRI-AIKKACDEAKAGDIVLIAGKGHEDYQII--GKTKYHFD 468 >gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- 2,6-diaminopimelate ligase [Streptomyces avermitilis MA-4680] Length = 506 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 152/482 (31%), Positives = 241/482 (50%), Gaps = 45/482 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL Q+ + R+ ++ ++ DSR ++ G ++ A+ G + G F+ QA GA A++ Sbjct: 19 ELAGQMGAATPE-RDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVAVL 77 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 + D +A + P+LVVD+ R + A+ +YG ++L +TGTSGK++ A Sbjct: 78 TDPTGA--DRAAA--TGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTA 133 Query: 131 SFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHV 185 ++ GL + + G T+ D R+ TTP L + + +GV V Sbjct: 134 YLIE-----GGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAV 188 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-A 244 ++E SSH L R+DG F NL +H+++H + YF AK +LF P+ S Sbjct: 189 AMEVSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLF---TPQRSKLG 245 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFL 303 ++ DD Y + +++ AG +++ +G + + T +V G + + Sbjct: 246 VVNFDDEYGRRLVE---EAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERI 302 Query: 304 F---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY- 359 PL G F V N L A A G+D + + + VPGR E V G+ Y Sbjct: 303 TARSPLAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDV----GQPYL 358 Query: 360 --VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH ++++E +L+ +R +T G++ +V GCGGDRD+ KR MG A LAD A++T Sbjct: 359 AVVDYAHKTDAVESVLRALRKVTEGKLHIVLGCGGDRDRTKRMPMGAAAARLADTAVLTS 418 Query: 418 DNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKG 468 DNPRSEDP I A ++ G +P E+G NR AI + D ++VAGKG Sbjct: 419 DNPRSEDPLAILATMLAGAAEVPSH-ERGEVQVFENRAAAIAAVVARARPGDTVLVAGKG 477 Query: 469 HE 470 HE Sbjct: 478 HE 479 >gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium hathewayi DSM 13479] Length = 493 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 151/479 (31%), Positives = 228/479 (47%), Gaps = 34/479 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +V DSR + +FV G K D H FIP + G +A+VV + D IR Sbjct: 26 EVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDVVKAGVKALVVERQAEIPDGVTAIR- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 V ++R+ L+L ++ +G+ E ++ VTGT GK++ ++ I + G Sbjct: 85 ------VHSSREALALLSAARFGRPQEKMITIGVTGTKGKTTTTHMIKAILESCGKKVGM 138 Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T I S TTP L ++ + G ++ +E SS HR+DGI+ Sbjct: 139 IGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEYMVMEVSSQAFKMHRVDGIRFD 198 Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN+ DHI D H Y K +LL + I+ DD + +E++K + Sbjct: 199 YGLFTNISPDHIGPDEHADFAEYLYYK----SQLLSRCRIGIVNRDDEHYREIIK---DT 251 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISVEGK-DFDFLFPLPGEFQVYNALV 317 C + S + + + IH + + V G+ + +PG+F VYNAL Sbjct: 252 ACELASYSLEQEADFMAG--QIHYVSEPEFVGLEFDVTGRYKLEARVNIPGKFNVYNALA 309 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +C + + V LE L V GR E V +S+ + VDYAH + S+E +LK +R Sbjct: 310 AISVCSFLDLPKEKVRHALEHLSV-NGRMEIV-YSSKKCTVIVDYAHNAVSMESLLKTLR 367 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R++ VFGCGG+R + +R MG A LAD I+T DN R E I A+I I Sbjct: 368 EYHPKRLVCVFGCGGNRSKDRRYSMGDSAGRLADFTILTADNSRFEKTGDIIADIRSSIE 427 Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 FIE +R EAI ++ D++ V GKGHE V NG + D +++ EI Sbjct: 428 KTGGEFIEIPDRREAIAYSMIHARPGDMIAVIGKGHEDYQEV-NGVRHHFSDREVVLEI 485 >gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis SK119] gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Staphylococcus hominis subsp. hominis C80] Length = 494 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 216/462 (46%), Gaps = 49/462 (10%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 SR IFVA G D H F I QG + IVV+ ++ ++V Sbjct: 30 SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNR-------KQEVKGEVTQVIVP 82 Query: 97 NTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ-------RSGLSSFQI 147 +T + S+ A L+ + + VTGT+GK+S+A+ + I + G + FQI Sbjct: 83 DTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQI 142 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + TTP + L K + +++E SSHGL RL G++ Sbjct: 143 NEEKTKGAN------TTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVA 196 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHNAG 264 F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD +SK ++ Sbjct: 197 VFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSK-YLETVTPYE 255 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---------GEFQVYNA 315 + + +F+ Q + S++G FDF P G+F + N Sbjct: 256 ILTYGIDNEAQFM----------AQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNL 305 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A + GID ++E ++ L V GR E + S + +DYAHT++ + ++ Sbjct: 306 MAAMIAVWSKGIDFKDIVEVVKSLEPVEGRLEVLDP-SLPIDLIIDYAHTADGMNKLIDA 364 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ ++I + G G+RD K P MG +A AD I T DNP +DP+ + AE+ G Sbjct: 365 VQPFVKQKLIFLVGMAGERDLTKTPEMGAVAC-RADYVIFTPDNPADDDPKMLTAELAKG 423 Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +IE +R E I+ AIE+ N D +V+A KG E I+ Sbjct: 424 ATHNNYIEFEDRAEGIKHAIEVANPGDTVVLASKGREPYQIM 465 >gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 514 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/422 (30%), Positives = 206/422 (48%), Gaps = 33/422 (7%) Query: 88 SNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S P+++ + R L A+ ++ ++P + VTGT+GK+SV + + ++ G+ + Sbjct: 93 SGLPVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVT- 151 Query: 146 QIGPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G TST I + +RLTTP L L+ + V V++E S+ L +HR+DG Sbjct: 152 --GLTSTAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDG 209 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + +F NL DH+D + + YF+AK F+ + ++ D + + ++ Sbjct: 210 LVFDIAAFINLSHDHLDDYADFEEYFDAKAAFFDPDRARR--GVVSLDTEWGQRIVD--- 264 Query: 262 NAGCRV--LSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLF---PLPGEFQVYNA 315 G R+ ++ + V + T +EG D L P+PG F NA Sbjct: 265 --GSRIPMTTIASKPGVDADWTVTVLEQTPDSTGFRLEGPDNRVLVSRVPVPGWFMAANA 322 Query: 316 LVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A + + G D V L++ +PGR E V + G +VDY HT ++ E Sbjct: 323 GLAIVMLVESGYDLDAVAHVLDRDGGIQAYIPGRAERV-SGETGPLFFVDYGHTPDAFEQ 381 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R T G++++VFG GDRD KR MG IA LAD+ ++TD +PR EDP IRA Sbjct: 382 TLQALRPFTPGKLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRAS 441 Query: 432 IIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +I G + E + AIRTA+ ++ + D ++VAG GHE H V + S Sbjct: 442 LIAGAMAAVPDREIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVAGRKIPFSAR 501 Query: 486 CD 487 D Sbjct: 502 DD 503 >gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787] Length = 493 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 233/460 (50%), Gaps = 39/460 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I E+++DSR + AG +FV I G DGH F+ + + +GA+A++V + I+ Sbjct: 23 EITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEVLEKGAKAVIVEKEVKAPEHVTVIK- 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 V++TR L+L ++ +G +P L V G +G + V+ I + G Sbjct: 82 ------VEDTRYALALASAAYFG-YPAEQLKVIGITGTKGKTTTTYMVKSILEGVG---H 131 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ++G TI + D + TTP + + + G V +E SS GL HR G Sbjct: 132 KVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKMVDAGCDAVVMEVSSQGLMLHRTAG 191 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I G FTNLG DHI + H+ + Y K LF++ I DD Y ++V + Sbjct: 192 IPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLLFKQC----RIGIANVDDPYFEDVFR- 246 Query: 260 AHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYN 314 A C++ + G+ K L+ K+ + V+ V G DFD +PG F VYN Sbjct: 247 --GATCQIETFGFAQK-ADLRAADTKLVSRPGYLGVSYHVSGLMDFDVEIDIPGTFSVYN 303 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +L A +C + ++ + L+ V GR E V S + +DYAH + SLE +L Sbjct: 304 SLTAIAVCRHFDVPVEMIKKALKVAKVK-GRIEMVKV-SEDFTLMIDYAHNAMSLESLLT 361 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+P+ I +I Sbjct: 362 TLKEYHPKRLVCLFGCGGNRAKARRYEMGEVSGKLADLTIITSDNPRFEEPQDIIDDIKI 421 Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 GI ++E +R EAIR A++ DV+V+AGKGHE Sbjct: 422 GIGKTDGKYVEICDRKEAIRYAVDHAEVGDVIVLAGKGHE 461 >gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Oceanithermus profundus DSM 14977] gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Oceanithermus profundus DSM 14977] Length = 477 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 144/486 (29%), Positives = 233/486 (47%), Gaps = 46/486 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ DSR ++ G+++VA+ G + DGH F+ A+A+GA A+ + A S Sbjct: 18 EVRGVTHDSRRVEPGFVYVALPGRRFDGHAFVADAVARGAVAVAGARALS---------P 68 Query: 89 NTPILVVDNT--RKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFV-QQICQRSGLSS 144 P L + T R L+ A+ +G+ E + +A + + +F+ + SG + Sbjct: 69 GVPYLRLPETELRPALARLAAEFHGRPSEKLWVAGVTGTDGKTTTTFLLHHLLASSGRRT 128 Query: 145 FQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG + + TTP + L+ + G+TH +EASSH L QHRLD Sbjct: 129 GMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGLLARMVEGGLTHAVLEASSHALAQHRLDA 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + +T+L +H+D+H + YF AK L E + A++ Y+ ++ R H Sbjct: 189 VDFDLAVWTHLSPEHLDFHGDMEGYFRAKALLVE----RARLAVLNTACPYAMRLVHRPH 244 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALV 317 LS G G+F ++ +H + S EG+ F+ P+ G + NAL Sbjct: 245 ------LSYGPGGEF----ELLEVHEEAAGLAFAFASPEGR-FETRLPMLGRYNAENALA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G+ L + VPGR + V T R+ VD+AHT L L +R Sbjct: 294 ALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTEPF--RVVVDFAHTPKGLAATLSALR 351 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 T GR++VV G G+RD GKR +G+ A++LAD+A+ T+++ RSE E+I AE+ G Sbjct: 352 PTTEGRLVVVVGSAGERDPGKRAPLGRTAVELADLAVFTEEDSRSEPVEEILAELARGAE 411 Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 ++ + +R AI A E+ D +V+AGKGHE + E + + Sbjct: 412 EASGREGKDYLLEPDRGRAIALAFELARPDDTVVLAGKGHERT-LERENETLPWNEAALA 470 Query: 490 REILGL 495 R++LGL Sbjct: 471 RKLLGL 476 >gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sibiricum 255-15] Length = 489 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 127/448 (28%), Positives = 216/448 (48%), Gaps = 22/448 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR + G +++ + G DGH + +A+A GA AI+ Sbjct: 25 ITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEEPID--------GVE 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++++ +T+ A Y HP + L V G +G + + + + + G Sbjct: 77 VPVVLLQDTKHAAGKVADLFY-DHPSHKLKVYGITGTNGKTTTTKLTYDLFRAAGQKAGM 135 Query: 150 TSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 STI + D TTP I L + L + QGVT +E SSH L + R++G+K Sbjct: 136 ISTIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQGVTDCVLEVSSHALMEGRVEGVKFH 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A +FTNL DH+DYH + + Y AK +F+++ A+I + VM++A Sbjct: 196 AAAFTNLTHDHLDYHASMEEYAQAKALVFKQVATSGGQAVILNEADPKSRVMEKAAEG-- 253 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + Y K + + ++ V++ ++G + L G+F N A GL A Sbjct: 254 -VPVIWYATKALSEAPITVEWKEETVSVRIDGTVTEVPVFLLGDFNAANLAAAIGLMQAG 312 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 ++ ++ H+ +L + GR E + G +Y+DYAHT + LE LK + ++ + Sbjct: 313 NVNMYQLIRHIPELRLPKGRLEQI--PFEGCEVYIDYAHTPDGLEKCLKAL-SVPGEPLY 369 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442 +V G+RD+ KR +MG+IA + IVT +PR E P++I E++ IP Sbjct: 370 MVLSAAGERDRSKRAVMGRIAGQYCEGIIVTVHDPRREQPQQIIKELLVEIPPRKIITCH 429 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R EA++ A ++ +V+ GKGHE Sbjct: 430 ESRKEALQIAAKVALTGKRMVIVGKGHE 457 >gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae TN] gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium leprae Br4923] gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase [Mycobacterium leprae] gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae] gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase (meso-diaminopimelate-adding enzyme) [Mycobacterium leprae Br4923] Length = 530 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 147/480 (30%), Positives = 224/480 (46%), Gaps = 26/480 (5%) Query: 11 FPELINQ----LSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 PEL+ Q L+ P Q + + V+ ++ + +G +F A+ G G + A Sbjct: 21 LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA A++ A + + +A S+ PIL+ R L A+ YG HP N + V G Sbjct: 81 LERGAVAVLTDVA-GVAELTAQA-SSVPILIHPEPRSVLGGLAAAAYG-HPSNRMTVVGI 137 Query: 124 SGKSSVAS--FVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSS 179 +G S + ++ + R+G + T I D + LTTP L L+ + Sbjct: 138 TGTSGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVE 197 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--EL 237 +GV V +E SSH L R++G + FTNL RDH+D+H + YF AK LF+ L Sbjct: 198 RGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSL 257 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 L + + DDA + L + ++ + ++ + G Sbjct: 258 LRARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRS-PGVGAQEFTAVDPAG 316 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 LPG + V N LVA + +G+ + + PGR E + + Sbjct: 317 VQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRI-PGRLERIDCG-QDFL 374 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH +L +L + R+ VVFG GG+RD GKR MG+IA +LAD+ +VTD Sbjct: 375 ALVDYAHKPGALHSVLTALLQ-PDHRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTD 433 Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPR EDP IR +I+ G +E G+R AI+ A+ DV++VAGKGHET Sbjct: 434 DNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHET 493 >gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase homolog [Macrococcus caseolyticus JCSC5402] Length = 489 Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 218/462 (47%), Gaps = 32/462 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN+V DSR + +FVA G D H FIP + QG IVV D Sbjct: 23 INKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRMIVVDHYIEGLDIGQ----- 77 Query: 90 TPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +VV +T + +F + + H VTGT+GK+SVA+ + + + ++S + Sbjct: 78 ---VVVRDTLQAARIFTQHVMDFPSHKLTTYGVTGTNGKTSVATMIHHLHRALNINSAYL 134 Query: 148 GPTSTISSFAQDNRL-----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G + F + + +TP I L + +++ QG +++E SSHGL R DG+ Sbjct: 135 G----TNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMSSHGLALGRTDGV 190 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKR 259 + FTNL +DH+D+H T + Y K LF +L ++ A++ DD YSKE++ Sbjct: 191 DIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVNGDDDYSKELIIA 250 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALV 317 + V++ G + + +K + + ++E D + P G F +YN L Sbjct: 251 SPR---EVITYGIE-QNTDIKATNIKESIHGIAFTLETPDGNVEITCPYIGRFNIYNMLA 306 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G + + E + L V GR E + N + +DYAHT + + ++ + Sbjct: 307 ALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNLPIDLV-IDYAHTPDGMNKLIDALE 365 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 G++I + G G+RD K P MG +A AD I T DNP ++DP K+ + G Sbjct: 366 PFKRGKMIFLIGMAGERDLSKTPEMGAVAC-RADYVIFTPDNPANDDPRKLTDALESGAT 424 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 ++ +R E IR AI M D++V+A KG E I+ N Sbjct: 425 HTNYVSFLDRAEGIRHAIAMSEPGDMVVLASKGREPYQIMEN 466 >gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 492 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 142/486 (29%), Positives = 235/486 (48%), Gaps = 19/486 (3%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+NQL Q E +I ++ DSR + +F + G + DGH F+ AI GA A+V Sbjct: 2 LLNQLF---KQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVH 58 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S L + I VVD LF + + + VTGT+GK S+A + Sbjct: 59 SE--ELVHYEEGILYFRVNDVVDTLNVIADLFYAE--ASYHLQMFGVTGTNGKESIAKII 114 Query: 134 QQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q++ + IG S T + LTTP+ I L L + G+ ++E SS Sbjct: 115 QEVLNPDKATG-NIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSV 173 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G++Q R+ + FTNL +H+D+H T Q YF AK + F++L K + AI DD Y Sbjct: 174 GVEQKRVQSVHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEK-ACAITNIDDPY 232 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +K ++ RV++ G + ++ +++ + + V +++D L F Sbjct: 233 G---LKMVEDSEARVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFN 289 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + N A G+ L+ E ++ L + G + + + + VD AHT + L Sbjct: 290 LMNLTAAIVALHESGVKMELIQERVKFLTQMEGHMQMI-QEGQNFNVLVDIAHTVDGLSR 348 Query: 372 ILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L+ +IT + RIIVV G G RD+ KR +G + D+ I+T+++PR+E P +I Sbjct: 349 VLEYATSITPKNCRIIVVNGSVGKRDKIKRQKVGNLMDQYCDMIILTEEDPRNESPREIA 408 Query: 430 AEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 EI GI ++ +R +AIR A+E+ + +D ++V GKG++ G D Sbjct: 409 EEIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKGNQKFMERDIGRCSYQGDVI 468 Query: 488 IIREIL 493 I++E+L Sbjct: 469 IVKEVL 474 >gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1] Length = 484 Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 149/487 (30%), Positives = 231/487 (47%), Gaps = 42/487 (8%) Query: 11 FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +L+N+++ +Q ++++++ DSR +Q +FV I G DGH FI Q I +GA Sbjct: 3 LKQLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRGAR 62 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 IVV Q+ IR V R L+L + + +HP + V G +G Sbjct: 63 VIVVEHDVPFQEGITYIR-------VKEARLALALLSCAFF-EHPSRQMTVIGITGTKGK 114 Query: 130 ---ASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGV 182 + ++ I +++ + ++G TI S Q + TTP L + + + G Sbjct: 115 TTTSYMMESILEKA---NKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQMVECGC 171 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ--QAYFNAKMRLFEELLPK 240 + +E SS GL +R+ GI G FTNL DHI H+ + Y K LF+ Sbjct: 172 EYCVMEVSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEHHSFEHYMACKKMLFQMC--- 228 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295 I DD + ++++K A + S+ Q K IH Q V+ Sbjct: 229 -KVGIFNRDDEHYEDMIKGA-KCDIKTYSLHQQSDL----KASQIHLSQGTGTLGVSFQT 282 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G D +F +PG F VYN+LVA LC +GI++ + E L+K+ V GR E V + Sbjct: 283 SGLIDANFETDIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKVRV-RGRVEIVPVGQK 341 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAH + S E IL+ I RI+ V+G GG RD +R +G+I +I Sbjct: 342 Y-TVMIDYAHNALSFESILQTIMDYQPHRILCVYGAGGHRDVKRRYDVGEIVAKYKAFSI 400 Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T DNPR E+ +I +I+ GI ++ +R EAI A+E DV++ GKGHE Sbjct: 401 LTADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVILCLGKGHE 460 Query: 471 TVHIVTN 477 I+ N Sbjct: 461 DYQILQN 467 >gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris trichoides DG6] Length = 521 Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 140/497 (28%), Positives = 231/497 (46%), Gaps = 47/497 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR ++ GW+FVAI G DGH ++ A+ +A V+ ++ ++ P+ Sbjct: 28 LAYDSRQVRPGWLFVAIRGFHVDGHQYVDHAL----KAGAVAVVVDVRHWNGPTTLGVPL 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSS----- 144 + V ++R L+ A+ Y HP L G T GKS+ V Q+ + GL + Sbjct: 84 ITVADSRVALAPLAANFYA-HPAAHLRTIGITGTKGKSTTTDLVSQVLEGGGLRTGMIST 142 Query: 145 --FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200 F+IG + R +TP + L + G ++ +E++SH L + RL Sbjct: 143 VDFKIG----ARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSYAVLESTSHALSPYWNRLG 198 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MK 258 + F N+ +H+DYH + + Y K RLF L +S A + D + V + Sbjct: 199 NVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSEASCHQGDRVERPVWAIA 258 Query: 259 RAHNAGC-----------RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 A + C R L+ G + + V + + + ++ + + Sbjct: 259 NADDPNCQFFLDAAPSYARRLTFGVRAAADVRAHAVASGPSGSHLRVTTPWGEAALHLQI 318 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG F V NAL A + ++ G+ + LE + + GR + + + + VDYAH Sbjct: 319 PGSFNVSNALAALSVALSQGVPLERAITALEAVPGIRGRMQPIHLG-QPFDVIVDYAHNP 377 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +S E +L +R +T GR+I VFG G+RD+ KR + G+IA AD+ ++TD++PR EDP Sbjct: 378 DSFEQVLSMLRPLTKGRMIAVFGSAGERDRAKRSVQGEIAGRYADLLVLTDEDPRGEDPA 437 Query: 427 KIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 I AEI+ G G+ NR EAI AI D++++ GKGHE I +G Sbjct: 438 AIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHVAIAAAQPGDLVLLLGKGHEGSIIYASG 497 Query: 479 E---KKMSVDCDIIREI 492 + V C +R + Sbjct: 498 AIPWDEADVACQALRSL 514 >gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis GM 1503] gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis GM 1503] Length = 390 Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L L+ + +GV V +E SSH L R+DG + G+FTNL RDH+D+H Sbjct: 49 LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 108 Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + YF AK LF+ + + A++ DD + + RA +A ++V + H + Sbjct: 109 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 164 Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 +Q I G LPG + V N LVA + +G+ + L Sbjct: 165 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 224 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 ++ V PGR E + +G VDYAH +L +L + R+ VVFG GGDRD Sbjct: 225 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 281 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450 GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G + G +E +R +AIR Sbjct: 282 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 341 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 A+ DV+++AGKGHET Sbjct: 342 HAVAWARPGDVVLIAGKGHET 362 >gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis GM 1503] Length = 394 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L L+ + +GV V +E SSH L R+DG + G+FTNL RDH+D+H Sbjct: 53 LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 112 Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + YF AK LF+ + + A++ DD + + RA +A ++V + H + Sbjct: 113 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 168 Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 +Q I G LPG + V N LVA + +G+ + L Sbjct: 169 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 228 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 ++ V PGR E + +G VDYAH +L +L + R+ VVFG GGDRD Sbjct: 229 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 285 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450 GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G + G +E +R +AIR Sbjct: 286 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 345 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 A+ DV+++AGKGHET Sbjct: 346 HAVAWARPGDVVLIAGKGHET 366 >gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis EAS054] Length = 379 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L L+ + +GV V +E SSH L R+DG + G+FTNL RDH+D+H Sbjct: 38 LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 97 Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + YF AK LF+ + + A++ DD + + RA +A ++V + H + Sbjct: 98 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 153 Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 +Q I G LPG + V N LVA + +G+ + L Sbjct: 154 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 213 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 ++ V PGR E + +G VDYAH +L +L + R+ VVFG GGDRD Sbjct: 214 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 270 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450 GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G + G +E +R +AIR Sbjct: 271 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 330 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 A+ DV+++AGKGHET Sbjct: 331 HAVAWARPGDVVLIAGKGHET 351 >gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp. AT1b] Length = 485 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 145/453 (32%), Positives = 220/453 (48%), Gaps = 33/453 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR + +G +F+ I G DGH F A+A GA A++ S Y L + Sbjct: 22 VTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVI--SEYPLD-------LD 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P +VV +T++ AS Y HP + I VTGT+GK++ A+ + + SG + Sbjct: 73 VPNVVVADTKQTAGEVASVFY-DHPSHRMRIYGVTGTNGKTTTATLTYDLLRLSGRRA-- 129 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 G STI + + + TTP + L + L+ + GVT +E SSH L + R+ GI Sbjct: 130 -GIVSTIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHALMEGRVAGI 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A +FTNL DH+DYH++ Y AK RLFE++ AI+ + + VM A Sbjct: 189 HFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDSASHVM--AEF 246 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAG 320 A R ++ Y V I + T+ V K+F P+ G F N A G Sbjct: 247 APTR-RAIMYSTTVDVEADVQVIWRDE--TVLVRMKEFKLEVPVRFMGAFNAANLAAAIG 303 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 L + ++ ++ L + GR E + T IY+DYAHT + LE L ++ Sbjct: 304 LVSTSDMALRTIVSNVPGLTLPKGRLERLATED--AEIYIDYAHTPDGLEKCLSTLQQDD 361 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437 ++VV GDRD KR MG+IA ++ IVT + R EDP++I +++ GI Sbjct: 362 RA-LVVVLSAAGDRDPTKRQDMGRIASRYSNEVIVTVHDVRMEDPKQIIRDLVKGIQPDV 420 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ R EA+R A + +VV GKGH+ Sbjct: 421 KYVTFEAREEALRHAATQALEGKRVVVVGKGHD 453 >gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM 43247] gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM 43247] Length = 556 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 148/435 (34%), Positives = 220/435 (50%), Gaps = 36/435 (8%) Query: 93 LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LV R L ++R+YG + ++ +TGTSGK++ + V+ +G S IG Sbjct: 119 LVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVEAALLAAGSSVGLIGTV 178 Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T I AQ + LTTP L L+ + +GV V +E SSH L R+DG G+F Sbjct: 179 ETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHALALGRVDGSHFALGAF 238 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAG---- 264 TNL +DH+D+H T AYF AK +LF P + ++I DD + + + A A Sbjct: 239 TNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEWGARMAELARPAARQSA 298 Query: 265 ---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G ++ + V + I+ D + + PLPG + V NAL+A + Sbjct: 299 RQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGDAELVVPLPGRYNVANALLAVAV 358 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL-----K 374 G+D+A + + + VPGR + V RG VDYAH +++ +L + Sbjct: 359 ADCAGVDAATAIGAIATVS-VPGRLQRV---DRGQPFLALVDYAHKPGAVQAVLATLRAQ 414 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +GR+ +V G GGDRD KRP+MG+ A A+ +VTDDNPR+EDP IRAE++ Sbjct: 415 AAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDDNPRTEDPAAIRAEVLA 474 Query: 435 GI--------PGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 G P E+ G R EAI TA+ D +++AGKGHET + NG K Sbjct: 475 GARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAGKGHETGQEI-NGVKHP 533 Query: 483 SVDCDIIREIL-GLI 496 D D++ ++L GL+ Sbjct: 534 FDDRDVVAQVLDGLV 548 >gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus Y51MC23] Length = 486 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 141/460 (30%), Positives = 219/460 (47%), Gaps = 45/460 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + ++ DSR ++ G++FVA+ G DGH FIP+A+ +GA A+V QD + Sbjct: 19 VRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIPEALRRGAIAVVGE-----QDLT 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRS 140 + P V ++R+ L+L A R YG+ P+ L VTG+ GKS+ A + + + + Sbjct: 74 LPV----PYARVADSRQALALLARRFYGE-PDRALRLFGVTGSKGKSTTAFLLHHLLEEA 128 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L S +G + TTP + L + +G+ +E SSH L R++ Sbjct: 129 ALLS-TVGLRLGGEARPPIGHFTTPEAPEVYAFLREAADRGLREAVLEVSSHALALKRVE 187 Query: 201 GIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G+ G F N DH+D+H T +AYFNAK L E + A++ + + + +R Sbjct: 188 GLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKTLLVE----RSDLAVLNTSLTHLERLRQR 243 Query: 260 AH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 H G V + G + + + T+ + PL G V NAL Sbjct: 244 PHLLFGPGGEVWAEGVREE-----------EGLRFTLHTPWGKGEVHLPLIGAHNVENAL 292 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A+ +A G+ VLE L VPGR E V + R+ +D+AHT SLE L+ + Sbjct: 293 AASAAALAAGVPLEKVLERLSGFPGVPGRMEVV--QEKPFRVVIDFAHTGKSLEAALRTL 350 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEI 432 R T GR+++V G G+RD +R +G++A LAD A T+++ R+ED I Sbjct: 351 RPTTQGRLLLVVGAAGERDPRRREDIGRVAARLADKAFFTEEDHRTEDLGAILEAMARAA 410 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 F +R EAI AI + D +++AGKGHE Sbjct: 411 AAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKGHEAT 450 >gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341] Length = 498 Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 144/469 (30%), Positives = 230/469 (49%), Gaps = 31/469 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N +S DSR I G +FVAI G DGH FI + I QGA A+V++S Y ++++ N Sbjct: 23 VNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQGA-ALVIASRY--ENYNV---EN 76 Query: 90 TPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +LVV K S+ A ++ + +AVTGT+GK+S+++ V + + G SS I Sbjct: 77 CAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGKTSISTLVHNMLRNLGESSAYI 136 Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + F +++ TTP + L + L + + +++ EASSH + R+ Sbjct: 137 GT----NGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFEASSHAMALGRIYN 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAY----SK 254 + + FTNL +H+D+H Q Y K LF L L + ++ DD+Y SK Sbjct: 193 VDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGVLNKDDSYYKIISK 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + ++ N + + + I K I+ S EG F+ G+F V N Sbjct: 253 CLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGT-FECTTNYIGDFMVSN 311 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G ++ L KL + GR E +G + I D+AHT + E +L+ Sbjct: 312 VLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILG-DDLPIDIISDFAHTPDGYEKLLE 370 Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I G R ++V G GG RD K P++G+I + AD ++T D+PR ED E + I Sbjct: 371 ATREIRKGKRTLLVTGMGGGRDISKGPLIGEI-ISEADYVVITTDSPRDEDVEVLMGSIE 429 Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 G+ + + R +A++ IE+ DV+++A KG E I+ G+K Sbjct: 430 KGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASKGREDYEILQGGKK 478 >gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054] Length = 373 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L L+ + +GV V +E SSH L R+DG + G+FTNL RDH+D+H Sbjct: 32 LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHP 91 Query: 222 TQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + YF AK LF+ + + A++ DD + + RA +A ++V + H + Sbjct: 92 SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWR 147 Query: 281 KV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 +Q I G LPG + V N LVA + +G+ + L Sbjct: 148 ATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 207 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 ++ V PGR E + +G VDYAH +L +L + R+ VVFG GGDRD Sbjct: 208 REIRV-PGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 264 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPG---FIEKGNRIEAIR 450 GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G + G +E +R +AIR Sbjct: 265 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 324 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 A+ DV+++AGKGHET Sbjct: 325 HAVAWARPGDVVLIAGKGHET 345 >gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM 15897] Length = 489 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 233/480 (48%), Gaps = 39/480 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+N + ++ I + DSR ++ G +FV +VG + H FI Q I +GA AIV Sbjct: 5 KLLNGFEYEIIGNKDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKGAHAIV 64 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSV 129 +S SL++ IR V +TR L+L S Y +P ++ +TGT GK+S Sbjct: 65 ISQDVSLKEGMTYIR-------VKDTRIALALL-SCAYFNYPSKELKVVGITGTKGKTSS 116 Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + ++ I + +G IG T I + TTP L + + + + +E Sbjct: 117 SLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKMVEHDCEYCVME 176 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAII 246 SS L +R+ GI+ G FTN+ DHI + H+ Y K LF+ + Sbjct: 177 VSSQALKMNRVAGIEFDYGVFTNISPDHIGPNEHKDFAEYMACKKHLFDFC----QVGLF 232 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQ-QVTISVEGKDF- 300 DD + +E K + C+VL+ + K +H++ ++N+ ++ I+ + K Sbjct: 233 NKDDEHFEEFTK---DVPCKVLTYSIEKDSDLKALHIE----LYNENGELGITFDTKGLI 285 Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 F +PG+F YNALVA +C I + + + L ++HV+ GR + + S + Sbjct: 286 NASFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVL-GRGQVMHV-SPDYSV 343 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 +DYAH S E I+ + ++IVV+G GG R + +R G++ +I+T D Sbjct: 344 LIDYAHNGVSFESIISTVEQYNPNKLIVVYGSGGKRSKTRRYESGEVVAKHGGYSILTAD 403 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 NPR E I +I+ GI + + +R EAI A++M K DV+++ GKGHET I Sbjct: 404 NPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKGHETYMI 463 >gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Dietzia cinnamea P4] gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase [Dietzia cinnamea P4] Length = 521 Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 141/470 (30%), Positives = 219/470 (46%), Gaps = 48/470 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++ DSR + G ++A+ G+ G F +A GA + A SAT+ Sbjct: 36 VVDITDDSRSVSTGHAYLALPGSHHHGLDFEGRAAEAGAAVAISDRA------SATL--- 86 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVV + R ++ +G P N + VTGT+GK+S A ++ +G SS Sbjct: 87 -PTLVVGDPRAVSGPLSAWFHGC-PSNAMRVFGVTGTNGKTSTAHLLEAGLAAAGESSGL 144 Query: 147 IGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 I + I D R TTP L + L + G T ++E SSH +DQ R+DG++ Sbjct: 145 IS-GAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGGATACAMEVSSHAIDQGRVDGVRF 203 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +FTNLG DH+DYH T + ++ K LF + A++ DD + + + + Sbjct: 204 RTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAA--RADTAVVSVDDHHGRRLAAESEPPT 261 Query: 265 --CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 C V VG ++ + V + T + G QV NALVA Sbjct: 262 WTCSVRDVGAD---VYAEDVVCDGTGSRFTARTPYGAVPVRLRVLGPHQVPNALVALTCL 318 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A GID E L +L VPGR E V + VDY H +L ++R++ +G Sbjct: 319 LADGIDPLAAAEGLSRLSRVPGRCEPVNAG-QSFTALVDYMHNEPGQRALLPHLRSMATG 377 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-------- 434 R+I+V G G RD+ KR +G+ A AD+ IVTD++P EDP +RA+++ Sbjct: 378 RLILVIGATGGRDRTKRRPLGRTAASFADLVIVTDESPEDEDPAAVRADVLAGAREAAGA 437 Query: 435 --------------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ +E+ +R A+ A+ + DV+VVAG+G E Sbjct: 438 RAGGAAGVRARETAGVE-VVEEPDRGRALALAVAVAGPGDVVVVAGRGSE 486 >gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acaryochloris marina MBIC11017] gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Acaryochloris marina MBIC11017] Length = 499 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 145/479 (30%), Positives = 231/479 (48%), Gaps = 42/479 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I ++++S +Q G++F+ + G + DG F AI GA A +VS D Sbjct: 29 DAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFWKSAIEAGAAAALVSDQVDRADVGTHC 88 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +L + + + + A+ Y + P L + G +G + + I L++ Q Sbjct: 89 -----VLALKDMPRACAEVAATFYDQ-PSQKLKLVGMTGTNGKTTTTHLI--EYLLTTAQ 140 Query: 147 IGPTS---TISSFAQDNRLT----TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 PT+ T+ + +++T TP + L + LS + +E SSH L Q R+ Sbjct: 141 -APTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLSDAVAAQCQFGVMEVSSHALAQKRV 199 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAIIYADDAYSKEVM 257 G + F+NL +DH+DYHQ + YF AK LF P + AII DD Y + ++ Sbjct: 200 LGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFS---PDYLQGRAIINIDDVYGQRLV 256 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQ 311 + C S+ T V+G+ +F L G+F Sbjct: 257 DQIGPNQCWTYSIEGPADLY-------TSGLSYETAGVKGQLHTPKGTVEFFSSLVGQFN 309 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLE 370 V N L A G + +G+ + L + VPGR + + ++ + + VDYAHT +SLE Sbjct: 310 VSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDISVIVDYAHTPDSLE 369 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +LK R G++ VFGCGGDRD+ KRP+MG+IA L+D AIVT DNPR+EDP++I Sbjct: 370 NLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQAIVTSDNPRTEDPQQILQ 429 Query: 431 EIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ GIP +E R+ + D +++AGKGHE I+ G +K+ D Sbjct: 430 DVLAGIPMEVKPIVEVDRRVAIQAAIAQA-KPGDTILIAGKGHEDYQIL--GTEKIHFD 485 >gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 532 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 163/488 (33%), Positives = 244/488 (50%), Gaps = 48/488 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFS 83 R++ + V+SD+R + AG +FVA+ G + G F A+A+GA A++ A L D + Sbjct: 35 RDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGAAAVLTDDDGAALLGDLA 94 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 P+LV R L A+ +YG E++ AVTGT+GK++ + + + G Sbjct: 95 ------VPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTTYQLDHLLRALG 148 Query: 142 LSSFQIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +S IG T+ A D ++LTTP L L+ + GV +++E SSH L H Sbjct: 149 FTSGLIG---TVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEVSSHALALH 205 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+DG++ FTNL +DH+D+H Q+YF AK LF + ++ DDA+ + Sbjct: 206 RVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRG--VVVVDDAWGLRMA 263 Query: 258 KRAHN--AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYN 314 + A A R + G + + V T++ +G+ LPG F V N Sbjct: 264 EAAQVPVATLRTVPDGPAADWT-VSDVEPHGTGTAFTVTHKDGRTLRTSTTLPGHFNVAN 322 Query: 315 ALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFV--GTNSRGG--RIYVDYAHTS 366 A +A + + G V E L VVPGR E + GT ++ R+ VD+AH + Sbjct: 323 AALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVVVDFAHNT 382 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +LE+ L +R T GR++VVFG GDRD GKRP MG A++ AD+ +VTDD+P EDP Sbjct: 383 EALELALAALRPTTPGRLVVVFGATGDRDTGKRPAMGAAAVEGADVVVVTDDDPHGEDPA 442 Query: 427 KIRAEIIHGIPGFI-----------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +RAE++ G E R AIRTAI D +++AG+GH Sbjct: 443 AVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAGDTVLIAGRGH 502 Query: 470 ETVHIVTN 477 ET+ V Sbjct: 503 ETIQEVAG 510 >gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Variovorax paradoxus S110] gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus S110] Length = 520 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 151/501 (30%), Positives = 224/501 (44%), Gaps = 77/501 (15%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----------QGAEAIVVSS 75 +ER + +DSR + AG F+A G DG + A+A QGAEA Sbjct: 15 KERVQGALHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAEAFGFDG 74 Query: 76 AYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + PI DN L +LAVTGT+GK+S A ++ Sbjct: 75 DERIASYPGLKAATGPIASAFYDNPSAAL-------------EVLAVTGTNGKTSTAWWL 121 Query: 134 QQ----ICQRSGLSSFQI---------GPTSTISSFAQD-------NRLTTPSPIYLAKA 173 + + G+ + ++ P + + + LTTP P+ + + Sbjct: 122 AESLSTLAVPGGVRAPRLDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRE 181 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L L +G ++EASS G+ + RLD ++ FTN +DH+DYH + AY+ AK L Sbjct: 182 LRALVERGFGACAIEASSIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAEL 241 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQ 290 F P A+I DD + + AG V +V G L ++ Q Sbjct: 242 FR--WPGLRAAVINIDDVHGASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQG 299 Query: 291 VTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + SV D D + L G++ V N L G A+G+ A + +L VPGR Sbjct: 300 LRFSVAEHDNDAVERMSTGLIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRM 359 Query: 347 EFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRP 400 E VG N+ VDYAHT ++L+ L +R + G + VFGCGGDRD KRP Sbjct: 360 ERVGAADANAAAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRP 419 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT--------- 451 +M +A AD +VT DNPRSE+P+ I ++++ G+ R EA + Sbjct: 420 MMAAVAERQADRVVVTSDNPRSENPDAIISQVLLGL-------ARPEAAQVQPDRAAAIA 472 Query: 452 -AIEMLNKQDVLVVAGKGHET 471 AI QDV+++AGKGHE Sbjct: 473 DAIAQAAPQDVVLLAGKGHEA 493 >gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM 16795] Length = 502 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 230/468 (49%), Gaps = 44/468 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +++ S Q G++FVA+ G DGH ++ A ++GA V+ + D + I Sbjct: 26 EIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSRGARVFVLQDDIEMADDAIKI-- 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +V+++R LS ++ +G ++ I+ VTGT GK+++ +++ ++ R+G+++ Sbjct: 84 -----IVEDSRIALSKISANYFGNPSKSLKIIGVTGTKGKTTITNYISEVLNRAGINTGV 138 Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T ++ ++ TTP L + + GV VS+E SS GL +HR++ + Sbjct: 139 VGTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVECVSMEVSSGGLQRHRVEHVDFD 198 Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--- 260 FTNL DHI H T Q Y K +LF L K II DD +++E++ A Sbjct: 199 VAIFTNLSPDHIGPKEHPTFQNYLECKAKLF--TLAKH--GIINIDDEHAQEIIDIATCD 254 Query: 261 -------HNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 A R ++ Y + +K VC N ++ PG F Sbjct: 255 IETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAG----------NYYICSPGMFS 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +YNAL +C +G+ + E L + V GR E + I +DYAH SLE Sbjct: 305 IYNALAVIAVCKYLGVKKEITREALTEAKVC-GRVEVLSVLPYA-TIIIDYAHNGVSLEN 362 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 ILK + R+I +FG G R + +R +G +A D++I+T DNP EDP +I + Sbjct: 363 ILKTLEHYDHKRLICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFEDPLEIIDD 422 Query: 432 IIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 I +I + +R +A++ A+ M + D++V+AGKGHET ++ Sbjct: 423 IAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLI 470 >gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces albus J1074] Length = 552 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 145/471 (30%), Positives = 231/471 (49%), Gaps = 44/471 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR ++ G ++ A+ G + G F QA + GA AI+ A + + + Sbjct: 39 LSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASLGAAAILTDPAGA----GPALATG 94 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ-----RSGL 142 P+LVV + R + A+ LYG ++L +TGTSGK++ A ++ + R+ Sbjct: 95 LPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSGKTTTAYLIEGGLRAAQEARAKE 154 Query: 143 SSFQIGPTSTISSFAQ---DNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + +I PT I + D R+ TTP L + + +GV +++E SSH L Sbjct: 155 TGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVRALAMEVSSHALV 214 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+D F NL +H+++H + YF AK +LF + K ++ DD Y + Sbjct: 215 LGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQLFTKARSKL--GVVNHDDEYGRR 272 Query: 256 VMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ + V+S +G + + + + EG+ PL G F Sbjct: 273 LLTESE---VPVISFSAEGHPDADWRAEDVIVGSLDSTFTAVGPEGQRISARSPLAGPFN 329 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNS 368 V N L A A G+D + + + VPGR E V G+ Y VDYAH +++ Sbjct: 330 VANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDA 385 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +E +L+ +R +T GR+ +V GCGGDRD KR MG A LAD+A++T DNPRSEDP I Sbjct: 386 VESVLRALRKVTEGRLYIVLGCGGDRDTTKRGPMGAAAARLADLAVLTSDNPRSEDPLAI 445 Query: 429 RAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + ++ G +P E+G +R AI A+ D ++VAGKGHE Sbjct: 446 LSTMLAGAAEVP-IHERGDVIIDADRAGAIAEAVVRAEAGDTVLVAGKGHE 495 >gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 488 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/453 (30%), Positives = 210/453 (46%), Gaps = 27/453 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR +F + G DGH F QA+ GA A+V S + + IR Sbjct: 15 IDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDVIEGIVYIR-- 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 VD+ L Y N + +TGT+GKS+ V+ I +R G+++ I Sbjct: 73 -----VDDVMTELHRVTDVFYNSPSTNMYVYGITGTNGKSTTMLTVRNILRRFGVNAGYI 127 Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G TIS +++ LTTP + L L + +GV V +E SS GL R++ I Sbjct: 128 G---TISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVESID 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 SFTNL DH+DYH+T + YF AK LF+ L P ++ D+ Y E+++ + Sbjct: 185 FDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPS-GFMVLNIDNEYG-EILQNQDYS 242 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V K + + + T+ EGK + + F VYN L + Sbjct: 243 NVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVIAILH 302 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 G ++ L+ + V GR V + R+ VD+ H +S++ + + +R+ Sbjct: 303 QRGYALEKIIPELKDIEHVDGRQTMV-NKGQPFRVIVDFGHAPDSMKNVYEFVRSTQDEG 361 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438 R+I VFG G RD KRPIMG++A D I+T+ + R E I +II GI Sbjct: 362 ARLITVFGAAGGRDTAKRPIMGRVASMYCDHVIITEHDNRDERVVDITQDIITGIESNNY 421 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 F+ NR +AI A++M D +V+ GKG E Sbjct: 422 EFVP--NRTDAIEKALKMALPGDTVVLIGKGEE 452 >gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis thaliana] gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana] Length = 772 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/507 (27%), Positives = 248/507 (48%), Gaps = 46/507 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + +I + DSR + AG +FV +G++ F+ +A +GA Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAV 300 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V S ++D + R+ +++V++T L+ AS Y +HP ++V G +G Sbjct: 301 AVVASKEIDIED-TLGCRA---LVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSP------IYLAKALSYLSSQGV 182 + I + G ST+S + DN+L TP+ + + ++ + G Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGT 415 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241 + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF ++ P+ Sbjct: 416 ESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPER 475 Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ DD + +++ + N ++ +H K + QV ++ Sbjct: 476 HRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGIL 535 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G +YN L A + IA+G ++ +E++ VPGR E + G + V Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654 Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458 R+EDP I +++ GI +++ G+R+ A+R A+ M + Sbjct: 655 RNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485 D++VVAGKGHE + GEKK D Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKKEFYD 739 >gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] Length = 767 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/507 (27%), Positives = 248/507 (48%), Gaps = 46/507 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + +I + DSR + AG +FV +G++ F+ +A +GA Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGSEN----FLSEADKRGAV 300 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V S ++D + R+ +++V++T L+ AS Y +HP ++V G +G Sbjct: 301 AVVASKEIDIED-TLGCRA---LVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSP------IYLAKALSYLSSQGV 182 + I + G ST+S + DN+L TP+ + + ++ + G Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGT 415 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241 + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF ++ P+ Sbjct: 416 ESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPER 475 Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ DD + +++ + N ++ +H K + QV ++ Sbjct: 476 HRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGIL 535 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G +YN L A + IA+G ++ +E++ VPGR E + G + V Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654 Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458 R+EDP I +++ GI +++ G+R+ A+R A+ M + Sbjct: 655 RNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVD 485 D++VVAGKGHE + GEKK D Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKKEFYD 739 >gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ferrimonas balearica DSM 9799] Length = 487 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 229/456 (50%), Gaps = 31/456 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G FVA+ G++ DG FI AIA GA A++ + + R+ ++ V Sbjct: 26 DSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGAVAVLADADADGRQAD---RNGVIVVGV 82 Query: 96 DNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 N + LS A R Y ++ VTGT+GK++V Q+ G Q G T+ Sbjct: 83 HNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVTQLCAQLLTALG---HQAGVMGTVG 139 Query: 155 SFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + + TT I +A+ L + G V++E SSHGL Q R+ + + G +T Sbjct: 140 NGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVALEISSHGLSQSRVAALPVQVGVYT 199 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVLS 269 NL RDH+DYH AY +AK +LF LP + DD E R H +L+ Sbjct: 200 NLSRDHLDYHGDMAAYADAKRQLFA--LPGLRHGVFNLDD----ETGSRWHRELSGSLLA 253 Query: 270 VGYQ-------GKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +GY G ++ ++ V H++ + +S G+ PL G F + N L A G Sbjct: 254 LGYSIQGARCDGAYLTVEGV-EYHDQGVRARVVSSFGQGT-LNSPLLGAFNLANLLAALG 311 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +++G + +L + +LH GR E GT+S + VDYAHT ++L L +R Sbjct: 312 ALLSLGYSLSDLLSVVPQLHSAAGRMECFGTDSTP-TLVVDYAHTPDALSQALAALRPHC 370 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 G + VFGCGG+RD GKRP+M + A AD I+T DNPRSE I A++ G+ G Sbjct: 371 RGALWCVFGCGGERDSGKRPLMAQAAEQGADHLIITADNPRSEAFADIAAQMEAGLTGQA 430 Query: 441 EK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 E +R A+R A D++++AGKGHE I+ Sbjct: 431 EVIEDRAAAVRRAFAQAQPGDMVLLAGKGHEDYQII 466 >gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium 6_1_63FAA] Length = 497 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 146/508 (28%), Positives = 245/508 (48%), Gaps = 44/508 (8%) Query: 8 YKDFPELINQLSIFPMQW----RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 Y++ +L++ L Q +++I +++ DSR + G +F I G DGH + + Sbjct: 5 YENMKKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEV 64 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA ++V QD + ++ V+N+R ++ ++ +G HP L G Sbjct: 65 AEKGAAVLIV------QD-KVEVPEEVTVIQVENSRYAMACISAAWFG-HPAEKLKTIGI 116 Query: 124 SGKSSVAS---FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSY 176 +G + V+ I + +G ++ G TI + + ++ TTP + K + Sbjct: 117 TGTKGKTTTTYLVKSILENAG---YKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAE 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234 + G V +E SS GL HR G + G FTN+ DHI + H+ Y K LF Sbjct: 174 MVEAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLRCKALLF 233 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 K+ I+ DA + + H C V + G+ K + + + K + I Sbjct: 234 -----KQCKVGIFNADAEHLDEILEGHT--CEVETFGFSEKADLRAENTKLVTGKGTLGI 286 Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + K +F LPG F VYN+L A +C G+ + + L++ V GR E V Sbjct: 287 AYDVKGLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVK 345 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LA Sbjct: 346 VSDEF-TLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLA 404 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D+ I+T DNPR E+P++I +I GI ++E +R EAI AI D++V+AG Sbjct: 405 DLTIITSDNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAG 464 Query: 467 KGHETVHIVTNGEKKMSVDCDI-IREIL 493 KGHE + KK +D + I+EIL Sbjct: 465 KGHEDYQEIKG--KKYPMDERVLIQEIL 490 >gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 427 Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 139/395 (35%), Positives = 208/395 (52%), Gaps = 50/395 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+K +A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISEFGG 277 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458 MGKI A IAI+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKEN 389 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 390 DDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 514 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 195/399 (48%), Gaps = 27/399 (6%) Query: 91 PILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 PI+V + R L A+ ++ + + VTGT+GK+SV + I + G+ + G Sbjct: 96 PIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKTSVVYLLYAILGQLGIVA---G 152 Query: 149 PTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TST I A + LTTP L L+ + +GV ++E S+ L +HR+DGI+ Sbjct: 153 LTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAAIEVSAQALSRHRVDGIEF 212 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL DH+D + YF AK+ LF+ + ++ D + +++++ Sbjct: 213 DVAGFTNLSHDHLDDYTAMPDYFAAKLELFQP--DRARRGVVTVDSEWGHRLVEQSRIPV 270 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321 + SV G + + ++EG L PL G + NA +A + Sbjct: 271 TTLSSVA--GSEADWRVTVLEETLARTAFALEGPGGRLLETSVPLLGAYNASNAALAIVM 328 Query: 322 CIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + G D + LE+ +PGR E + + RG +++DY HT ++ L +R Sbjct: 329 LVESGYDLDAIGAALERDGGIDAYIPGRAERL-SGDRGPVVFIDYGHTPDAFSSTLAALR 387 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 +T+GRI++VFG GDRD KR MG IA AD ++TD +PR EDP IRA ++ G Sbjct: 388 RVTAGRIVMVFGADGDRDITKRAEMGAIAARGADAVVITDFHPRWEDPATIRAALLEGAR 447 Query: 438 GFIEKGNRIE------AIRTAIEMLNKQDVLVVAGKGHE 470 + + + E A RTA+ + + DV++ AG GHE Sbjct: 448 NAVPERDLYEVPDPRTAFRTALSLAGEGDVVLYAGPGHE 486 >gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora DSM 43833] Length = 524 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 159/470 (33%), Positives = 232/470 (49%), Gaps = 51/470 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR +Q G ++VA+ G+ G F +A A GA AI+ +A + + + Sbjct: 36 ITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRER----AVATG 91 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRS-GLSSFQ 146 P+LVV + R L A+ +YG +P L + G +G S ++ F+ + R+ G + Sbjct: 92 LPVLVVPDPRAVLGRVAAWVYG-NPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGL 150 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG + RLTTP L + + QGVT ++E SSH L R+ I Sbjct: 151 IGGVEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYD 210 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAH--- 261 FTNL +DH+D+H+ YF AK RLF P S ++ DD Y +E+ +RA Sbjct: 211 VAIFTNLSQDHLDFHRDLDDYFAAKARLFT---PDHSRLGVVNIDDRYGRELAERAKIPI 267 Query: 262 ---------NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +A RV V G G + + G + D LPG F Sbjct: 268 TTFSPSGDADADWRVADVRLGADGSVFRV-------------VGPGGVETDVSVALPGAF 314 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL A + G+ + + VPGR E V +++VDYAH ++E Sbjct: 315 NVANALAALVALVEAGVPVPAAVAGIGMTTCVPGRMERV-PGPGDIQVFVDYAHKPAAVE 373 Query: 371 MILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +L+++R + + R+++V GCGGDRD+GKRP+MG+ A LAD AI T+DNPRSEDP I Sbjct: 374 SVLRSLRAVMGSGRRLVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAI 433 Query: 429 RAEIIHG---IPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 A ++ G +P I + +R AI AI DV++VAGKGHE Sbjct: 434 LAAMLSGALRVPAAERAHVIVEPDRAAAIDLAISTARSGDVVLVAGKGHE 483 >gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus deserti VCD115] gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Deinococcus deserti VCD115] Length = 493 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 147/457 (32%), Positives = 222/457 (48%), Gaps = 38/457 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ ++ +Q G+ FVAI G K DGH F+ Q GA A++ + + S P Sbjct: 25 VTHNAAWVQPGFAFVAIRGAKFDGHSFLQQVREAGAVAVLG------EGMPDGMNSPLPY 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L V + R L+ A+ L G HP ++ VTGT GK++ + + + + +GL Q G Sbjct: 79 LTVPSARAALADAAAALAG-HPSRALKVVGVTGTDGKTTTSWLTRHLLREAGL---QTGL 134 Query: 150 TSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 ST+ D L TTP + + L + + G + V +EASSH L R+ G+ Sbjct: 135 LSTVGFELPDGELRHFPAHFTTPEAPQVQQTLQDMVAAGASAVVLEASSHALALDRVRGV 194 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +T+L +H+D+H T + YF K RL E + A++ ADD ++ ++ A Sbjct: 195 DWDVAVWTHLTSEHLDFHGTVENYFADKRRLVE----RAPFAVLNADDPWTGQLRGVAPA 250 Query: 263 AGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 L +Q I +++ +H + + FD P+ G F V NAL A Sbjct: 251 ETTYSLDGAGADWQATDIQ-ERLTGLHFQVNSPLGA----FDAALPMIGRFNVANALAAM 305 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +G D+A + L VPGR E V + R+ VD+AHT SLE L +R Sbjct: 306 AAAAHLGADAAQLAAGLASFRGVPGRMELVPAGGQEVRVIVDFAHTPPSLEKALSTLRAT 365 Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 T+GR+ V+ G GG RD GKR +G++A LAD A+ T+++ R E I E+ G Sbjct: 366 TTGRLWVLIGSAGGPRDPGKRAPLGEVATRLADHAVFTEEDSRDTPLEDILREMERGARQ 425 Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 FI G+R EAIR I+ D +++AGKG E Sbjct: 426 GGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKGPE 462 >gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. WH 7803] gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Synechococcus sp. WH 7803] Length = 499 Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 237/478 (49%), Gaps = 38/478 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR + G +F+ + G + DG F P A+A GA A+++ + A S Sbjct: 25 VTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASGAAAVLIGEQAAAAHPPAPGDS- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +LVV + F + + + + P ++ VTGT+GK++ ++ + Q G + Sbjct: 84 --VLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTNGKTTTTHLIEHLSQACGRPAAL 141 Query: 147 IG------PTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ 196 G P ++++ +RL LA+AL +G T V+ +E SSH LDQ Sbjct: 142 FGTLVNRWPGHSLTATHTTAAADRLQA----QLAEAL-----EGGTQVAAMEVSSHALDQ 192 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-EELLPKESP-AIIYADDAYSK 254 R+ G + FTNL +DH+DYH + +AYF AK LF L E P A++ DD + + Sbjct: 193 QRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEGPRAVVNVDDPWGR 252 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ R R S+ ++ + + N + + F PL G F + N Sbjct: 253 QLADRLGERAWRC-SLAHEADLT-MADLRMTSNGVDGALRTPLGEGRFHSPLVGRFNLMN 310 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLE 370 L A G + G+ L+L L VPGR E + + VDYAHT + L Sbjct: 311 VLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPAVLVDYAHTPDGLR 370 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 L+ R G++I VFGCGGDRD+GKRP M IA LAD +VT DNPR+EDP +I Sbjct: 371 NALEACRPFVRGQLICVFGCGGDRDRGKRPQMAAIAAALADQVVVTSDNPRTEDPGQILD 430 Query: 431 EIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +++ G+P E+ +R +AI AI D++++AGKGHE I+ G +K+ D Sbjct: 431 DVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKGHEDYQIL--GTEKVHFD 486 >gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter coli RM2228] gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter coli RM2228] Length = 427 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 142/442 (32%), Positives = 218/442 (49%), Gaps = 63/442 (14%) Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + +A ++ S + I+ V+ +K L + ENI + +TGT+GK++ A Sbjct: 24 LKTAQNMNFASDALEKGAKIIDVEECKKLLKI---------DENIKIIGITGTNGKTTTA 74 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVT 183 + + I G F+ G T +F D ++ T SPI K L YL + + Sbjct: 75 AAIYSILLDLG---FKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQLATQKKCD 129 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E SSH L Q+R++G+K A FTN+ +DH+D+H + Y AK F + ES Sbjct: 130 FFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTD----ESL 185 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I D K ++ A + G + ++ K ++ + ++++ + F Sbjct: 186 KFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHID 238 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGG 356 PL G F +YN L+AA C+ + LV +L+ L V GR E V Sbjct: 239 SPLLGLFNLYN-LLAASACV-----NELVKPNLKDLEKAISGFGGVCGRVEQVANG---- 288 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 I VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+MGKI A IAI+T Sbjct: 289 -IIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIIT 344 Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPRSE+P+ I EI+ G IE +R EAI A+++ K D++V+ GKG E Sbjct: 345 SDNPRSEEPKDIMNEILSGFQNPDKALMIE--DRKEAINKALKLKEKDDLVVILGKGDEN 402 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K D I+ EIL Sbjct: 403 TQEI-KGIKHPFSDKAIVNEIL 423 >gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Leptothrix cholodnii SP-6] gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii SP-6] Length = 513 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 153/506 (30%), Positives = 229/506 (45%), Gaps = 46/506 (9%) Query: 23 MQWRERKIN---EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV----SS 75 + W ++ E+ +DSR ++AG F+A G+ DG ++ A+A GA A ++ ++ Sbjct: 13 LAWLRARLGDAAELRTDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAA 72 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133 A+ D I + + A R YG+ + +A +GT+GK+S A + Sbjct: 73 AFGFDDER--------IAALPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWT 124 Query: 134 QQICQRSGLSSFQIG------PTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHV 185 Q +G IG P S + AQ LTTP P+ L ++L + G Sbjct: 125 AQALSLAGQRCGVIGTLGVGEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAAC 184 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 ++EASS G+ +HRLD + +TN DH+DYH AY+ AK LF+ P A Sbjct: 185 AIEASSIGIVEHRLDAAPIRVALYTNFTPDHLDYHGDMVAYWLAKRALFD--WPGLQAAA 242 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGK-DFDFL 303 I DDA + G L + L+ + + ++ EG+ D Sbjct: 243 INVDDAQGAVLADELAARGDLDLWTYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVH 302 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----- 358 L G + N L G A+G+ A + VPGR V S G + Sbjct: 303 THLIGAYNASNVLAVIGGLRALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVV 362 Query: 359 -----YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 VDYAHT ++L+ L +R + GR++ VFGCGG+RD KRP MG IA LA Sbjct: 363 ALPQVVVDYAHTPDALDKALSALRPVAHAQGGRLVCVFGCGGNRDATKRPQMGAIAAQLA 422 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGK 467 D VT DNPR E+P+ I +I+ G G + +R AI + +DV+++AGK Sbjct: 423 DAVCVTSDNPRLEEPQAIVDQILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGK 482 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 GHE + G K+ D D+ L Sbjct: 483 GHEDYQDI-GGVKRPFSDIDVATAAL 507 >gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 260.94] Length = 427 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 48/394 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ +A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKVYSLEEGISAIVTN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPG 344 + T ++ PL G F +YN LVA+ C+ I L + LEK V G Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CVNELIKPDL--KDLEKAISGFGGVCG 280 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+MGK Sbjct: 281 RVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGK 332 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459 I A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 333 IVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELKEND 390 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 391 DLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia valaisiana VS116] Length = 508 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 42/478 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I+ ++ S+ + G++F A+ G DGH FI AI G+ IV S + Sbjct: 25 DLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNVIVCSRDLDFYN----- 79 Query: 87 RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 N + +D N +KF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 80 -PNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLRKKGV 138 Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++G ST+ F D R +TP + LS + V + +E++SHG Sbjct: 139 ---KVGFISTV--FFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHG 193 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD Sbjct: 194 LDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDF 253 Query: 252 YS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 YS K +K++ + + FI+ K + + +G + L G Sbjct: 254 YSYDFKNAIKKSFTYSLKNSQADFFVSFINEKT-----DSTEFEFYHKGVKYFANVNLLG 308 Query: 309 EFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 F V N + A L I D ++++L + + GR + + + + +DYAHT Sbjct: 309 SFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMDSINL-GQNFSVIIDYAHTPG 367 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + + + T+ R+I VFG G+RD KR + G+I+ +D+ ++ D++PR E+ Sbjct: 368 AFSKLFPIFKKFTTNRLISVFGSAGERDFAKRFLQGQISDSYSDLIVLCDEDPRGENSMC 427 Query: 428 IRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I +I GI + +R +AI AI + D++V GKGHE+ I NGE Sbjct: 428 IIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIVTLGKGHESSIIYKNGE 485 >gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC 27560] Length = 491 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 237/483 (49%), Gaps = 36/483 (7%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL+DL+ K +++ +++ + +DSR + G FV I G DGH FI Sbjct: 1 MKLKDLLTKLEYKVVKGSDTI-------EVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFI 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +++GA A+VV + + ++ VD+TR L+ ++ +G E ++ V Sbjct: 54 RDVVSKGAVAVVVMEDVEVDEDVTVVK-------VDDTRLALACMSADYFGNPAEKLITV 106 Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ V+ + + G+ + IG TI + TTP + + + + Sbjct: 107 GITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKM 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235 QG V +E SS GL HR+ G G FTN+ DHI + H+ Y + K L + Sbjct: 167 VEQGCKCVVMEVSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCKSMLLK 226 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VT 292 + I+ D + V++ H C + + G G + + + K V+ Sbjct: 227 QC----KHGIVNMDADFIDRVLE-GHT--CDIETYGVNGDYDFKAQDIKLFTKPGCLCVS 279 Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++GK DF +PG F VYN+L A +C D + LE + V GR E + Sbjct: 280 YDLKGKMDFPVEIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKV-KGRVEIIPI 338 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + R + +DYAH + SLE +L +++ R++ VFGCGG+R + +R MG+++ L+D Sbjct: 339 SKRF-TLMIDYAHNAMSLESLLTSLKQYNPKRLVTVFGCGGNRSKERRFEMGEVSSRLSD 397 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 IVT DNPR E+P I +I+ G+ ++ +R +AIR AI DV+++AGK Sbjct: 398 FTIVTSDNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGK 457 Query: 468 GHE 470 GHE Sbjct: 458 GHE 460 >gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii L2-63] Length = 488 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 154/491 (31%), Positives = 250/491 (50%), Gaps = 50/491 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL+DL LIN + +Q +I+++ DSR ++ G FV + G DGH + Sbjct: 1 MKLKDL-------LINVE--YTVQGNLNTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRY 51 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118 A+ +GA A+V+S + + + S+ ++ V++TR LSL + +G HPE+ L Sbjct: 52 AKSAVEKGASALVISDSLDFE-----VPSDVAVVKVEDTRYALSLMSIEFFG-HPEDELY 105 Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKA 173 A+TGT GK++ + V +I + +G+ + IG + + DN TTP + K+ Sbjct: 106 TVAITGTKGKTTTTAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDN--TTPESYIIQKS 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 + + + G + +EASS GL RL G+ G FTN DHI H+ Y K Sbjct: 164 MRDMINAGCKAMVIEASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLAEYLYCKS 223 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHLKKVCAI 285 LF + K + A I DD K++ K + VL+ G+ +GK HL + Sbjct: 224 LLFRQC--KFAAANI--DDPAWKDITKDFKGS---VLTYGFADNADLKGKNAHL---LSE 273 Query: 286 HNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVP 343 + V EG K+ +PG+F YNAL A + + I+ ++++ L K+ V Sbjct: 274 NGFVGVHFETEGIKNLSVDVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDAL-KVAKVK 332 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E V I +DYAH + S+E +L+ +R R+I +FG GG+R + +R MG Sbjct: 333 GRVERVPVPYNYTLI-IDYAHNALSMENVLETLRQYNPHRLITMFGAGGNRPKVRRYEMG 391 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ 459 + + L+D+++VT+DN R ED I +I G+ ++ NR +AI+ ++ Sbjct: 392 ETSGRLSDLSVVTEDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDG 451 Query: 460 DVLVVAGKGHE 470 D++V+AGKGHE Sbjct: 452 DIIVLAGKGHE 462 >gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81116] gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81116] gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni M1] gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni 327] Length = 427 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 208/397 (52%), Gaps = 54/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+K +A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIATN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456 MG I A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 330 MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 387 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 388 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. doylei 269.97] gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. doylei 269.97] Length = 427 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 208/397 (52%), Gaps = 54/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+K A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + A+ Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAVATN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISEFGG 277 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456 MGKI A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 387 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 388 ENDDLVVILGKGDETTQEI-KGVKYPFNDKVVVNEIL 423 >gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 506 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 222/467 (47%), Gaps = 41/467 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++ DSR I +FV +VG DGH +IP A+ +GA IVV + +A I Sbjct: 22 EVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKGASVIVVER----DEEAAQIPG 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +L V++ R L+L ++ L+ +P L G +G + I + ++G Sbjct: 78 TITVLKVESARYALALMSAALF-DYPAEKLITIGLTGTKGKTTTTYMIKNVLEAAGKKVG 136 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI + D ++ TTP L + + + G + +E SS GL R GI Sbjct: 137 LIGTIGAMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVMEVSSQGLKMDRTAGIMF 196 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTNL DHI + H + + Y K LF + I+ ADD +S+ V A N Sbjct: 197 DYGVFTNLSPDHIGPNEHASFEEYLECKSMLFRQC----KIGILNADDEHSEAV---AAN 249 Query: 263 AGCRVLSVG--------YQGKFIHLKKV----CAIHNKQQVTISVEG-KDFDFLFPLPGE 309 C + S G + GK + L + K + V+G D + +PG Sbjct: 250 HTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENGKLGMYFHVKGCMDCEARVHIPGR 309 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F VYN+LV +C GI +L+ L K+ V GR E + S+ + +DYAH S Sbjct: 310 FSVYNSLVTMLVCHLAGISDQAILDGLNKVQV-KGRVEMLPV-SKDYYLIIDYAHNEVST 367 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L + R+I V+G GG+R + +R MG++ ++AD+ ++T DNPR E+ I Sbjct: 368 RSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVLTCDNPRDEEIRDIN 427 Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKGHE 470 +I G+ +IE +R EAI A M+N Q D++V+ GKGHE Sbjct: 428 NDIKVGLAKSNGKYIEIDDRKEAI--AYCMVNAQPGDMIVLLGKGHE 472 >gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter coli JV20] gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter coli JV20] Length = 427 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 141/442 (31%), Positives = 218/442 (49%), Gaps = 63/442 (14%) Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130 + +A ++ S + I+ V+ +K L + ENI + +TGT+GK++ A Sbjct: 24 LKTAQNMNFASDALEKGAKIIDVEECKKLLKI---------DENIKIIGITGTNGKTTTA 74 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVT 183 + + I G F+ G T +F D ++ T SPI K L YL + + Sbjct: 75 AAIYSILLDLG---FKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQLATQKKCD 129 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E SSH L Q+R++G+K A FTN+ +DH+D+H + Y AK F + ES Sbjct: 130 FFIMEVSSHALVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTD----ESL 185 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I D K ++ A + G + ++ K ++ + ++++ + F Sbjct: 186 KFINKDTLMIKFNVRNA-------FTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHID 238 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGG 356 PL G F +YN L+AA C+ + LV +L+ L V GR E V Sbjct: 239 SPLLGLFNLYN-LLAASACV-----NELVKPNLKDLEKAISGFGGVCGRVEQVANG---- 288 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+MGKI A IAI+T Sbjct: 289 -VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIIT 344 Query: 417 DDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DNPRSE+P+ I EI+ G IE +R EAI A+++ K D++V+ GKG E Sbjct: 345 SDNPRSEEPKDIMNEILSGFQNPDKALMIE--DRKEAINKALKLKEKDDLVVILGKGDEN 402 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 + G K D I+ EIL Sbjct: 403 TQEI-KGIKHPFSDKAIVNEIL 423 >gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9303] gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9303] Length = 538 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 154/490 (31%), Positives = 240/490 (48%), Gaps = 62/490 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 VS DSR + G +F+ + G + DG F QA+A + A + +A +R P Sbjct: 59 VSCDSRAVARGCLFLGLPGEQVDGGSFWRQALAA------GAEAAVIGPAAAALRPPGPK 112 Query: 92 ---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 ++V + ++ A+ + + P + LA+ G +G + + ++ + G S+ Sbjct: 113 DAVVVVSEPVAAWVGQLAAAFW-QQPSSRLALIGVTGTNGKTTTTHLIEHLSVAVGRSTA 171 Query: 146 QIG-----------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G P + ++FA +RL LA+A+ + G ++E SSH L Sbjct: 172 LFGTLVNRWPNYSVPATHTTAFA--DRLQA----QLAQAVEAGAELG----AMEVSSHAL 221 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAY 252 +Q R+ G + FTNL +DH+DYH + +AYF AK +LF L + + A++ D + Sbjct: 222 EQQRVAGCRFAGAVFTNLTQDHLDYHSSMEAYFEAKAQLFAPPLLESGSAKAVVNIDGPW 281 Query: 253 SKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGK------DFDF 302 + +R + R L+ G L++ A ++T+S V+G+ + F Sbjct: 282 GARLAQRLGDTCWRSSLAEGV------LQRADAELTMTELTMSSAGVQGRLISPCGEGWF 335 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRI 358 PL G F + N L A G+ + G+ L+L+ + VPGR E V S+ + Sbjct: 336 DSPLLGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADASQVPTV 395 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAHT + LE L R TS + VFGCGGDRD+GKR M IA LAD +VT D Sbjct: 396 LVDYAHTPDGLENALTASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSD 455 Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 NPR+EDP++I +++ GIP + +R AI AI DV++VAGKGHE I+ Sbjct: 456 NPRTEDPQQILVDVVAGIPQGTALTVEVDRAVAIALAIAEAGPGDVVLVAGKGHEDYQIL 515 Query: 476 TNGEKKMSVD 485 G K+ D Sbjct: 516 --GTSKVHFD 523 >gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia afzelii ACA-1] Length = 505 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 140/485 (28%), Positives = 229/485 (47%), Gaps = 60/485 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + G++F A+ G + DGH FI AI G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRD---MDFYSP--- 80 Query: 89 NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD+ RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195 ++G ST+ S R +TP + LS + GV + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAILESTSHGLDLK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS E Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSE 257 Query: 256 ---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305 +K++ + + FI+ K ++ F+F + Sbjct: 258 FKNAVKKSFTYSLKSSQADFFVSFINEK--------------IDSTRFEFYYKGVKYFAN 303 Query: 306 --LPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F V N + A L I D +++ L + + GR + + + + +DY Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL-GQNFSVIIDY 362 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + + + + R+I VFG G+RD KR + G+I+ +D+ ++ D++PR Sbjct: 363 AHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRG 422 Query: 423 EDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 E+ I +I GI FI +R +AI AI + D++VV GKGHE+ I Sbjct: 423 ENSMCIIKDIAKGIVNKVVNQDLFFIP--DRKQAIEKAISLARAGDLVVVLGKGHESSII 480 Query: 475 VTNGE 479 N E Sbjct: 481 YKNRE 485 >gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptomyces clavuligerus ATCC 27064] Length = 561 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 144/477 (30%), Positives = 233/477 (48%), Gaps = 33/477 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +L + E + ++ DSR ++ G ++ A+ G + G F QA GA A++ Sbjct: 64 ELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAAVL 123 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + D +A + P+LV +N R + A+ +YG E +L +TGTSGK++ Sbjct: 124 TDPAGA--DRAAA--TGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTV 179 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 ++ + +G ++ +G T+ + + R+ TTP L + + +GV V+ Sbjct: 180 YLMEGGLRAAGRATGLVG---TVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVA 236 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH L R+DG F NL +H+++H + YF AK +LF + ++ Sbjct: 237 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPARSRRG--VV 294 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305 DDAY + + A + G+ + V +T + G P Sbjct: 295 NLDDAYGRRLAAEATVPVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAP 354 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDY 362 LPG F V N + A G+D + + + VPGR E V G+ Y VDY Sbjct: 355 LPGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERVDE----GQPYLAVVDY 410 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH +++++ +L+++R +T GR+ +V GCGGDRD+ KR MG A LAD A++T DNPRS Sbjct: 411 AHKTDAVDSVLRSLRKVTEGRLHIVLGCGGDRDETKRGPMGAAAARLADTAVLTSDNPRS 470 Query: 423 EDPEKIRAEIIHG---IPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKGHE 470 EDP I A ++ G +P E+G + A+ A+ D +++AGKGHE Sbjct: 471 EDPLAILAAMLAGAAEVPAH-ERGQVLVDADRAAAVAAAVARAEPGDTVLIAGKGHE 526 >gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 64b] Length = 508 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYS---P 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + T+ R+I VFG G+RD KR + G+IA +DI I+ D++PR E+ I + Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDIIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema brennaborense DSM 12168] Length = 557 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 158/502 (31%), Positives = 225/502 (44%), Gaps = 66/502 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR ++AG +F A+ G G+ FI +AIA+GA AIV A N Sbjct: 25 ITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARGAAAIVYQDDLPEDALRAAEERN 84 Query: 90 T----PILV-VDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 P+LV V + R +S A Y E ++ VTGT GKSS SF+ Q+ GL Sbjct: 85 NEAEAPVLVRVRDARFAMSPAADAFYDSPSEKLAVIGVTGTEGKSSTVSFIWQLL---GL 141 Query: 143 SSFQIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G ST+ + A TTP + + L + G + VE+SSHGL + Sbjct: 142 CGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQRQLYEMVQNGCEYAVVESSSHGLSR 201 Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---------------LP 239 +RL ++ AG F N+ +H+++H T + Y + K LF L +P Sbjct: 202 KTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSDKANLFRALDAHDHLKTIGGTRRRVP 261 Query: 240 K------ESPAIIYADDAYSKEVM------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 E PA Y +DA K V NA + + + +V A + Sbjct: 262 AFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAGKNADIPLPEIPAEIPRFSADRVAAKSD 321 Query: 288 KQQVTISVEGKD---------FDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLE 337 T +V D PLPG F VYN L + + GI A V E Sbjct: 322 GIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVYNVLASLITVSTITGIPFARVAEKCP 381 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +L V GR + + + VDYAHT +S E I +R RIIV+FG GG+RD Sbjct: 382 QLQPVKGRMTVI-DKGQPFEVIVDYAHTPSSFETIFPPLRKRARNRIIVLFGSGGERDTK 440 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGN-------RIEA 448 KRP G+IA D+ I+ D++PR+EDP + I G G E GN R +A Sbjct: 441 KRPEQGRIAARWCDVVILADEDPRAEDPAALLEMIAAGCRSAGKTE-GNGLYVVPPRPQA 499 Query: 449 IRTAIEMLNKQDVLVVAGKGHE 470 IR A + + D++++ GK HE Sbjct: 500 IRKAFALAAEGDIVLLLGKAHE 521 >gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 357 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 165/338 (48%), Gaps = 41/338 (12%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + T P L + L + ++ + +E +S GL R+ G FTNL +DH+DYH Sbjct: 17 INTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHG 76 Query: 222 TQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 T Y + K LF L ++ A++ ADD S E K+ +A V++ G Sbjct: 77 TFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDP-SVEYFKKITSA--EVITYG----- 128 Query: 277 IHLKKVCAIHNKQQV---TISVEGKDFDFL-----------FPLPGEFQVYNALVAAGLC 322 IHN+ V I++ K FL L G F +YNAL A + Sbjct: 129 --------IHNRADVQAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAITVA 180 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 I GI + + L L + GR E + N + + VDYAHT ++LE +L I + G Sbjct: 181 IVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFFVIVDYAHTPDALENVLSTISEFSKG 239 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP+ I +I G Sbjct: 240 KVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNL 299 Query: 443 GNRIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ++E AI AI M + D++++AGKGHET I+ Sbjct: 300 NYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQIL 337 >gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 486 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 156/485 (32%), Positives = 226/485 (46%), Gaps = 42/485 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I ++ DSR G +FV +VG DGH F A QG A +V L Sbjct: 17 DAEITAITYDSRKAGPGALFVCLVGAWMDGHTFARSAYDQGCRAFLVEHTLDLP------ 70 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 ++ +V +TR L++ + YG E + + +TGT GK++ A I +GLS Sbjct: 71 -ADVAQIVTQDTRAALAVIGADFYGNPAEQLHIIGITGTKGKTTTALLTSAILTEAGLSC 129 Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG I+ + TTP + L + + V HV +E SS L HR+DGI Sbjct: 130 AYIGSNGVNIAGTHEATANTTPESLELHRLFRKMLDANVHHVVLEVSSQALRHHRVDGIP 189 Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260 +FTNL DHI H + Y AK RLF E + ++Y ADDA S + RA Sbjct: 190 FEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFAEY---NARVMVYNADDAVSDYM--RA 244 Query: 261 HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGEFQVY 313 AG +V +G+ + + V + + + ++ G+ PG F Sbjct: 245 GFAGQQVSFGIGHDADY---RAVDLAQYRSETALGIDFTCEHGGEATPVRVMSPGAFSAS 301 Query: 314 NALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSL 369 +AL A LC A G+ +A L H V GRFE V GR + VDY+H +L Sbjct: 302 DALCAIALCGAFGVTPDQAAKTLAHTP----VEGRFEVV--EGLPGRTFIVDYSHNGLAL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 LK +R R+I VFG G R Q +R + + A AD +I+T DNP EDP I Sbjct: 356 TSALKTLRAYQPRRLICVFGSVGGRTQVRRRELAEAASAWADYSILTSDNPDFEDPMNIL 415 Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 +I + + +R EAIR A+ M D+++ AGKGHE ++ G+K V+ Sbjct: 416 RDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKGHEDYQLI-QGKKVPFVER 474 Query: 487 DIIRE 491 D+IRE Sbjct: 475 DLIRE 479 >gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 81-176] Length = 427 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 48/394 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ +A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQDHLDFHGTFENYKKA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPG 344 + T ++ PL G F +YN LVA+ C+ I L + LEK V G Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CVNELIKPDL--KDLEKAISGFGGVCG 280 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+MGK Sbjct: 281 RVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKQLIVVFGAGGDRDKTKRPLMGK 332 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459 I A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 333 IVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELKEND 390 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 391 DLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces lividans TK24] Length = 497 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 231/477 (48%), Gaps = 35/477 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +QL + +I ++ DSR ++ G ++ A+ G + G F+ QA GA A++ Sbjct: 10 ELADQLGVAAPDG-SAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVL 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + + +A + P LVVD+ R + A+ +YG ++L +TGTSGK++ A Sbjct: 69 TDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTA 124 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ R+ S+ IG T+ D R+ TTP L + + +G V+ Sbjct: 125 YLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVA 180 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245 +E SSH L R+D FTNL +H+++H + YF AK +LF PK S + Sbjct: 181 MEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRSRLGV 237 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD Y + + K A + G+ +V + + +G+ Sbjct: 238 VNVDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKS 297 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362 PL G F V N L A A G+D + + + VPGR E V G + VDY Sbjct: 298 PLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV---DEGQPFFAVVDY 354 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH ++++E +L+ +R +T G++ V GCGGDRD KR MG AD A++T DNPRS Sbjct: 355 AHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRS 414 Query: 423 EDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EDP I A ++ G +P E+G +R AI A+ D ++VAGKGHE Sbjct: 415 EDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 470 >gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate ligase [Borrelia afzelii PKo] Length = 505 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 140/485 (28%), Positives = 228/485 (47%), Gaps = 60/485 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + G++F A+ G + DGH FI AI G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNVIVHSRD---MDFYSP--- 80 Query: 89 NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD+ RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195 ++G ST+ S R +TP + LS + GV + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAILESTSHGLDLK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS E Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSE 257 Query: 256 ---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305 +K++ + + FI K ++ F+F + Sbjct: 258 FKNAVKKSFTYSLKSSQADFFVSFIDEK--------------IDSTRFEFYYKGVKYFAN 303 Query: 306 --LPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F V N + A L I D +++ L + + GR + + + + +DY Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMDSINL-GQNFSVIIDY 362 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + + + + R+I VFG G+RD KR + G+I+ +D+ ++ D++PR Sbjct: 363 AHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRG 422 Query: 423 EDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 E+ I +I GI FI +R +AI AI + D++VV GKGHE+ I Sbjct: 423 ENSMCIIKDIAKGIVNKVVNQDLFFIP--DRKQAIEKAISLARAGDLVVVLGKGHESSII 480 Query: 475 VTNGE 479 N E Sbjct: 481 YKNRE 485 >gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase [Campylobacter jejuni subsp. jejuni CG8421] Length = 450 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 146/447 (32%), Positives = 224/447 (50%), Gaps = 61/447 (13%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G E + + + + + + I+ V+ +K L + I+ +TGT+GK Sbjct: 41 GKECFFLQTTQNAKFHAQALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGK 93 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAKALSYL---SS 179 ++ A+ + I G ++ G T +F D ++ T SPI K L YL + Sbjct: 94 TTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--KTLEYLQIATQ 148 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y AK F + Sbjct: 149 KKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFFTD--- 205 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGK 298 ES I D K ++ A G ++ YQ K L++ + AI + T ++ Sbjct: 206 -ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTNKNQTFHIDS- 262 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHVVPGRFEFVGT 351 PL G F +YN LVA+ +C+ + LV L+ LEK V GR E V Sbjct: 263 ------PLLGLFNLYNLLVAS-VCV-----NELVKPDLKDLEKAISGFGGVCGRVEQV-- 308 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+MGKI A Sbjct: 309 -AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPLMGKIVEHFAK 362 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ D++V+ G Sbjct: 363 IAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKRALELKENDDLVVILG 420 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG ET + G K D ++ EIL Sbjct: 421 KGDETTQEI-KGIKYPFSDKVVVNEIL 446 >gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter hominis ATCC BAA-381] gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter hominis ATCC BAA-381] Length = 429 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 218/476 (45%), Gaps = 75/476 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ +S Q G F+ I N + F A+ GA+ I + A + + + I+ Sbjct: 10 ITDNSNECQNGAYFMQIDANMK----FADSALKNGAKIISIDEAKKMLNINKNIK----- 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 I+ +TGT+GK++ A+ + G F+ G + T Sbjct: 61 ------------------------IVGITGTNGKTTTAAAIYSTLLDLG---FKCGLSGT 93 Query: 153 ISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +F D R+ T S ++ K + YL S + +E SSH + Q+R+ G+ Sbjct: 94 RGAFINDCRIDEKGLTTSSVF--KTIGYLYEASKEDCEFFIMEVSSHAIAQNRIQGLNFA 151 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEVMKRAH 261 FTNL +DH+DYH+T + Y K F++ L+ K++ I Y + +K+ Sbjct: 152 LKIFTNLTQDHLDYHKTMEEYARVKSSFFKDDTPKLINKDAGGITYNETNARTYALKQI- 210 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AG 320 A VL+ +G + A+ I +E PL GEF +YN + A A Sbjct: 211 -ATYSVLAYSVKGA------IDALLRTPDGEIQIES-------PLVGEFNLYNLMAAFAA 256 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I D+ + E L V GR + V SR + VD+AHT + +E +L ++ Sbjct: 257 VKILTNYDNKKIAEALANFGGVEGRVQIV---SRNPYVVVDFAHTPDGIEKVLNALK--- 310 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437 +I VFG GGDRD+ KRP MG I A AI+T DNPRSEDP I EI G+ Sbjct: 311 DHELIAVFGAGGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKN 370 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I+ NR EAI+ AI + +++V+ GKG ET + G K D + + EIL Sbjct: 371 KIIKIENRAEAIKKAISLAKNGEMVVILGKGDETYQEI-KGVKHHFNDKECVLEIL 425 >gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces coelicolor A3(2)] Length = 506 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 151/477 (31%), Positives = 231/477 (48%), Gaps = 35/477 (7%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL +QL + +I ++ DSR ++ G ++ A+ G + G F+ QA GA A++ Sbjct: 19 ELADQLGVAAPDG-SAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAAVL 77 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVA 130 A + + +A + P LVVD+ R + A+ +YG ++L +TGTSGK++ A Sbjct: 78 TDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTA 133 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVS 186 V+ R+ S+ IG T+ D R+ TTP L + + +G V+ Sbjct: 134 YLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVA 189 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AI 245 +E SSH L R+D FTNL +H+++H + YF AK +LF PK S + Sbjct: 190 MEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLF---TPKRSRLGV 246 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304 + DD Y + + K A + G+ +V + + +G+ Sbjct: 247 VNVDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKS 306 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362 PL G F V N L A A G+D + + + VPGR E V G + VDY Sbjct: 307 PLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV---DEGQPFFAVVDY 363 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AH ++++E +L+ +R +T G++ V GCGGDRD KR MG AD A++T DNPRS Sbjct: 364 AHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRS 423 Query: 423 EDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EDP I A ++ G +P E+G +R AI A+ D ++VAGKGHE Sbjct: 424 EDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHE 479 >gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata] gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata] Length = 767 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 136/503 (27%), Positives = 241/503 (47%), Gaps = 46/503 (9%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + +I + DSR + AG +FV VG++ F+ +A +GA Sbjct: 245 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSES----FLSEADKRGAV 300 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V S ++D +++V++T L+ AS Y +HP ++V G +G Sbjct: 301 AVVASKEIDIEDTLGC----KALVIVEDTNAVLAALASSFY-RHPSKNMSVIGVTGTDGK 355 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL------TTPSPIYLAKALSYLSSQGV 182 + I + G ST+S + DN+L T P + + ++ + G Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHNGT 415 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKE 241 + +EAS L + D + FTNL R++ D+ T + Y +A+ +LF ++ P Sbjct: 416 EALVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDPGR 475 Query: 242 SPAIIYADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ DD + +++ + N ++ +H + QV ++ Sbjct: 476 HRKVVNIDDPNATFFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQGIL 535 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G +YN L A + IA+G ++ +E++ VPGR E + G + V Sbjct: 536 EISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIV 594 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+A+T + L +L +IR + RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP Sbjct: 595 DHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTMLTSDNP 654 Query: 421 RSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNK 458 R+EDP I +++ GI +++ G+R+ A+R A+ M + Sbjct: 655 RNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEE 714 Query: 459 QDVLVVAGKGHETVHIVTNGEKK 481 D++VVAGKGHE + GEKK Sbjct: 715 GDMVVVAGKGHEAYQL--EGEKK 735 >gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces griseoaurantiacus M045] Length = 506 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 233/483 (48%), Gaps = 47/483 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 EL QL + + E + ++ DSR ++ G ++ A+ G + G F+ QA Sbjct: 19 ELAGQLGVAAPET-EAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGL------ 71 Query: 73 VSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKS 127 +A L D S R + P+LV +N R + A+ +YG+ +L + TGTSGK+ Sbjct: 72 -GAAAVLTDPSGAERAAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKT 130 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVT 183 + A V+ R+ S+ IG T+ D R+ TTP L + + +GV Sbjct: 131 TTAYLVEGGL-RTAKSTGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGVE 186 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V++E SSH L R+DG FTNL +H+++H + YF AK +LF + Sbjct: 187 AVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPA--RSRL 244 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD--- 299 ++ DD Y + + A A V++ +G + + T +V G D Sbjct: 245 GVVNTDDEYGRRL---AAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVR 301 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PL G F V N L A A G+D + + + VPGR E V G+ Y Sbjct: 302 VTARSPLAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERV----DAGQPY 357 Query: 360 ---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH ++++E +LK +R +T GR+ +V GCGGDRD KR MG A LAD A++T Sbjct: 358 FAVVDYAHKTDAVESVLKALRKVTKGRLHIVLGCGGDRDTTKRMPMGAAAARLADTAVLT 417 Query: 417 DDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAGK 467 DNPRSEDP I A ++ G +P E+G +R AI A+ D ++VAGK Sbjct: 418 SDNPRSEDPLAILATMLQGAASVPAH-ERGEVQVFEDRAAAIAAAVARARPGDTVLVAGK 476 Query: 468 GHE 470 GHE Sbjct: 477 GHE 479 >gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Granulicatella elegans ATCC 700633] Length = 495 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 139/485 (28%), Positives = 229/485 (47%), Gaps = 35/485 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ ++ DSR ++ +F I G DGH F A +GA A V S + Q + Sbjct: 24 IDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKGAVAFVASKSIKNQ------VGD 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 TP++ V + + ++L A+ YG +++ + VTGT+GK++V + + ++ + I Sbjct: 78 TPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTVTHMIDALLEKPNKPTALI 137 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G I TTP + L + L G +E SSH L R+ G+ Sbjct: 138 GTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGGETCLMEVSSHALQLGRVWGLDYDC 197 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVMKRA 260 FTNL +H+D H+T + Y +AK LF +L K A++ ADD ++ Sbjct: 198 VVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKPKVAVLNADD---EQFQMFE 254 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVA 318 ++ +V+S G + + N + V D +L PL G F VYN L A Sbjct: 255 YSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLVDMPLLGIFNVYNMLSA 314 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + GI +L+ ++ V GR + V + ++ VD+AHT + LE +L ++ Sbjct: 315 IAVAYVYGISIEEILKKVKAFQGVAGRMQSV-DKGQDFQVIVDFAHTPDGLENVLDSLAQ 373 Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 I G+II V G GG+RD RP +G+IAL +D + T DNPR+E I G+ Sbjct: 374 IPHGKIITVVGHSGGNRDSSMRPELGRIALTKSDHVVFTADNPRTEP----LVNIYEGLL 429 Query: 438 GFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489 + K + R EAI A+++ + D++++AGKG E I+ E + + +++ Sbjct: 430 SAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKGVEAYQIIGEVEYPYN-EIEVV 488 Query: 490 REILG 494 +LG Sbjct: 489 ESLLG 493 >gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis RM3268] gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis RM3268] Length = 436 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 140/478 (29%), Positives = 220/478 (46%), Gaps = 77/478 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ +S +AG F+ N + F P+A +GA+ I + A L + I+ Sbjct: 10 ITDNSAECEAGCFFMRTSANAK----FEPEAAQKGAQIISIVQAKELLKIDSRIK----- 60 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 I+ +TGT+GK++ A+ + G F G + T Sbjct: 61 ------------------------IVGITGTNGKTTTAAAIYSTLLDLG---FSCGLSGT 93 Query: 153 ISSFAQDNRLT----TPSPIYLAKALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +F + R+ T S ++ K +SYL QG + +E SSH + Q+R++G++ Sbjct: 94 RGAFINERRIDEKGLTTSSVF--KTMSYLYEAGKQGCEYFVMEVSSHAIAQNRIEGLEFA 151 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTNL +DH+DYH + Q Y K F + ++P +I ADD + K A G Sbjct: 152 LKIFTNLSQDHLDYHGSMQEYAAVKSSFFAD----DAPKLINADDGHIKFDPANALTYGI 207 Query: 266 R------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA- 318 + V G +G L + N Q + L GEF +YN A Sbjct: 208 KNAASFGVSGYGLKGGIDALVRTPNGDNAQLQS------------DLIGEFNLYNLTAAF 255 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A + I + + + + L V GR + V + + VD+AHT + +E +L +R Sbjct: 256 AAVKILTKLPNEKIAKALANFGGVEGRVQIVNKDPL---VIVDFAHTPDGIEKVLNALRA 312 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 SG II VFG GGDRD GKRP MG IA A I IVT DNPRSE+P++I +I G+ Sbjct: 313 --SGEIIAVFGAGGDRDHGKRPKMGAIAEHFAKICIVTSDNPRSENPDEIIEQICAGMRR 370 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++ +R EAI A+++ +++ + GKG ET + G K D ++ E++ Sbjct: 371 KDKILKITDRKEAIARALDLAKNGEMIAILGKGDETYQEI-KGVKHPFSDKQVVSELV 427 >gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi JD1] Length = 508 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ +I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMRIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni RM1221] gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni RM1221] Length = 427 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 54/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456 MGKI A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALELK 387 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 388 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi 80a] Length = 508 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ +I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMRIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi WI91-23] Length = 508 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 138/474 (29%), Positives = 224/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K N + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----NSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 29805] Length = 508 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 36/469 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ S+ + ++F A+ G DGH FI AI +G+ IV S L +S+ + T I Sbjct: 31 VTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSR--DLDFYSSDV---TYI 85 Query: 93 LVVD-NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V D N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ ++G Sbjct: 86 KVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV---KVGF 142 Query: 150 TSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200 ST+ S R +TP + L + V + +E++SHGLD RL Sbjct: 143 ISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAILESTSHGLDLETARLI 202 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVM 257 + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS K + Sbjct: 203 DVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFGVINLDDFYSSDFKNAV 262 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 K++ + + FI K + + +G + L G F V N + Sbjct: 263 KKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYFANVNLLGSFNVENVMA 317 Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A L I ID +++ L + + GR + + + + +DYAHT + + Sbjct: 318 ALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSKLFPIF 376 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I +I GI Sbjct: 377 KRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKDIAKGI 436 Query: 437 PGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 437 VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 156a] Length = 508 Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 138/474 (29%), Positives = 224/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVIVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Blautia hansenii DSM 20583] Length = 497 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 147/501 (29%), Positives = 244/501 (48%), Gaps = 35/501 (6%) Query: 9 KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 K +L+ +L +Q +++I ++ DSR + G +F I G DGH + +G Sbjct: 9 KKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEKG 68 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A ++V QD + ++ V+N+R ++ ++ +G HP L G +G Sbjct: 69 AAVLIV------QD-KVEVPEEVTVIQVENSRYAMACISAAWFG-HPAEKLKTIGITGTK 120 Query: 128 SVAS---FVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183 + V+ I + +G + IG TI + + TTP + K + + G Sbjct: 121 GKTTTTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCD 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE 241 V +E SS GL HR G + G FTN+ DHI + H+ Y + K LF++ Sbjct: 181 SVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGPNEHKDFADYLHCKALLFKQC---- 236 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK-- 298 I AD + E+++ H C+V + G+ K + + + K + I+ + K Sbjct: 237 KVGIFNADADHLDEILE-GHT--CQVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGL 293 Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F LPG F VYN+L A +C G+ + + L++ V GR E V + Sbjct: 294 MNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDEF-T 351 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +DYAH + SLE +L ++ R++ +FGCGG+R + +R MG+++ LAD+ I+T Sbjct: 352 LMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITS 411 Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 DNPR E+P++I +I GI ++E +R EAI AI D++V+AGKGHE Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHEDYQ 471 Query: 474 IVTNGEKKMSVDCDI-IREIL 493 + KK +D + I+EIL Sbjct: 472 EIKG--KKYPMDERVLIQEIL 490 >gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Campylobacter jejuni subsp. jejuni S3] Length = 404 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 54/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 38 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 92 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y A Sbjct: 93 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 152 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 153 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 207 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 208 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 254 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 255 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 306 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456 MGKI A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 307 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALELK 364 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 365 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 400 >gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter chlorophenolicus A6] gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter chlorophenolicus A6] Length = 545 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 233/474 (49%), Gaps = 34/474 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + ++ +SR ++AG ++VA+ G G F+ QA+ GA A++ A + + Sbjct: 44 PGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGA-RL 102 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQI 136 + + P+LVVD R + ++ +YG + + VTGT+GK++ F+ + Sbjct: 103 LALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINSL 162 Query: 137 CQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G S IG ++ + LTTP + L+ + +G+ ++E SSH + Sbjct: 163 LRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAIS 222 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+DG+ FTNL +DH+D H T YF K LF + A++ DD + + Sbjct: 223 YQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTPARARR--AVVTVDDEWGRR 280 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQ 311 + A AG V ++ G+ V + T +G + LPG F Sbjct: 281 L---AGTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTLKGPDGAELRLHTGLPGSFN 337 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NA +AA + +A G+D A++ E ++ VPGR + V VD+AH ++ Sbjct: 338 VANAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQLVAEQPAA---VVDFAHNTD 394 Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +L L+ +R R+IVVFG G RDQGKRP MG +A LAD I+TDD+P ED Sbjct: 395 ALARALEAVRPPAPDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAA 454 Query: 427 KIRAEIIHG---------IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IRA+++ G +P +E R EAIR A+E+ D ++VAG+GHE Sbjct: 455 AIRADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHE 508 >gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Campylobacter jejuni subsp. jejuni 1336] gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Campylobacter jejuni subsp. jejuni 1336] Length = 427 Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 206/395 (52%), Gaps = 50/395 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNK 288 K F + ES I D K ++ A G ++ YQ K L++ + AI Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISAIVTN 230 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHV 341 + T ++ PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQTFHIDS-------PLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGG 277 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+ Sbjct: 278 VCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRPL 329 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458 MGKI A IAI+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ Sbjct: 330 MGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRKEAIKKALELKEN 389 Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 390 DDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon 107 str. F0167] Length = 495 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 149/496 (30%), Positives = 235/496 (47%), Gaps = 58/496 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +E+ ++++I +FV I G K D H I + + QGA+A+VV R Sbjct: 22 EFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAKAVVVQKDIK--------RD 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRS----- 140 + ++ V +TR L+ S Y HP I+ +TGT GK++ + +Q++ ++ Sbjct: 74 DICVIKVSDTRVALARL-SAAYFSHPAKKMKIIGITGTKGKTTSSYMLQKLLGQNAKVGL 132 Query: 141 -GLSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG T ST++ TTP L K +V +E SS + Sbjct: 133 IGTNGITIGDTHRSTLN--------TTPESYELHKTFKECLDANCEYVVMEVSSQAVMLK 184 Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++GI G FTN+ DHI D H+ Y K F++ I+ +D ++ Sbjct: 185 RIEGICFDIGIFTNISHDHIGPDEHKDFDEYLMYKSLFFKQC----KNTIVNIEDEHANY 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTI----------SVEGKDFD 301 V+K + + + + G G F +K + I NK ++ I SV + D Sbjct: 241 VLKTSDSK--QKYTFGKGGDF-DIKNIEYISNKDFLGTRIDIKCREEIAEKYSVNNEISD 297 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 +PGEF VYNAL A I G+ A L++ K V GR E V S + +D Sbjct: 298 IYVGIPGEFNVYNALSALSAAIICGVKEA-DLKNALKDSRVNGRME-VAYTSHDFNVVID 355 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAH + S E ++ +R R+++VFG GG+R + +R MG+I +AD +IVT DN R Sbjct: 356 YAHNAISTESLIHTLRNYKPKRLVIVFGSGGNRSKDRRYSMGEICGKMADFSIVTADNSR 415 Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 E E I A+II + +I +R EAI +IE K D++ + GKGHE + N Sbjct: 416 FEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLIAIIGKGHEDYQEI-N 474 Query: 478 GEKKMSVDCDIIREIL 493 G + +D +++ E L Sbjct: 475 GVRHHFLDREVVDECL 490 >gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Brevibacterium linens BL2] Length = 520 Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/480 (28%), Positives = 225/480 (46%), Gaps = 48/480 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER++ VS DSR + G ++ A+ G G F P + +G AI+ +A SA + Sbjct: 19 EREVGGVSHDSRTVSPGQLYAALPGANVHGAKFAPDLMERGITAILTDAA-GWDMISAAV 77 Query: 87 RSNTPI----LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSS---VASFVQQIC 137 T L+V++ R L ++ +YG P+ I ++ V ++ + Sbjct: 78 DPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQLIGVTGTNGKTTTTYLVDGMLEALG 137 Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 R+G+ IG +T I+ + + TTP L + + + V ++E SSH L Q Sbjct: 138 HRTGV----IGTVATLIAGVREPSVRTTPEAPELHALFAKMRAADVDTCAMEVSSHALSQ 193 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 HR+DG FTNL +DH+D+H + YF+ K +LF A+I +D + +++ Sbjct: 194 HRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFTRTF--SDAAVIVVEDRWGEKM 251 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ A V ++G + + ++ + + + PLPG+F V N Sbjct: 252 VEAAQ---VPVRTLGRDDRSELRIEHTPGVSDFILHLGGSADETIALRSPLPGDFNVTNT 308 Query: 316 LVAAGLCIAIGID-----------SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 +AA + + GI SA V +E + V R E R R VDY+H Sbjct: 309 ALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEGQTHPERLPRAIVDYSH 368 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T +++E L ++ S +++VFG GGDRD+GKR MG+ A AD+ ++TDDNPR+ED Sbjct: 369 TPDAIEKALASLHA-DSEELVIVFGAGGDRDRGKRYGMGQAAARGADVIVLTDDNPRTED 427 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------------QDVLVVAGKGHET 471 P IRA I GI I G ++ IE+ + +++AGKGHET Sbjct: 428 PNLIRAAIREGIDAEISNGR--ARVKKVIEVAERGSAIDEAIAAAEASTTVLIAGKGHET 485 >gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia spielmanii A14S] Length = 505 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 137/476 (28%), Positives = 227/476 (47%), Gaps = 42/476 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G + DGH FI AI +G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNVIVCSRDL---DFYSP--- 80 Query: 89 NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD+ RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKRGI-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195 ++G ST+ S R +TP + LS + GV + +E++SHGLD Sbjct: 139 -KVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAVLESTSHGLDFE 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G DH+++H T + Y N K+ LF+ + +I DD YS Sbjct: 198 TARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQSVSDDAGFGVINLDDVYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAIKKSFTYSLKNSQADFFVSFIDEKT-----DSTRFEFYYKGIKYFANVNLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L + ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + R+I VFG G+RD KR + G+I+ +D+ ++ D++PR E+ I + Sbjct: 372 LFPIFKRFAINRLISVFGSAGERDVAKRFLQGQISDIYSDLILLCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI FI +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVVNRDLFFIP--DRRQAIEKAISLARAGDLVVALGKGHESSIIYKNRE 485 >gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 516 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 157/502 (31%), Positives = 236/502 (47%), Gaps = 52/502 (10%) Query: 32 EVSSDSRHIQAGWIFVAI-VGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +V +DSR IQ+G IF A VG+ DG FI A+A GA A+V A + Sbjct: 25 KVGADSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANGAAAVVFDPA----GIDPQFQ 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSS 144 + V++ + + F ++ Y +P ++ VTGT+GK+S+ ++ Q + Sbjct: 81 DHPQCFAVESLAEKVGEFCAQWY-DYPSKQLKVIGVTGTNGKTSITQWLAQALDEPNHRT 139 Query: 145 FQIG------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G PT+ + + TTP L L L G V++E SSH L Q R Sbjct: 140 AVLGTLGTGFPTALVMT-----GYTTPDAPKLQTQLRELLDGGAQQVAMEVSSHALHQER 194 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-M 257 + G FTNL +DH+DYH + Y AK +LF++ + A+I DD + +E+ + Sbjct: 195 IAGTWFNCAVFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGLEH--AVINLDDPFGRELAI 252 Query: 258 KRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQV-------TISVEGKD--FDFL 303 +V + G ++G ++ I+ + V T V G + Sbjct: 253 NLLAKDSIQVWAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVYGDKGTYPLH 312 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTN--SRGGRIY 359 PL GEF + NAL + + G+ + + L V GR E + G N S G Sbjct: 313 IPLLGEFNLSNALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKNQKSEGLLAV 372 Query: 360 VDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAHT ++L+ L+ +R + G++ VFGCGGDRD KRP MG +A AD I+T Sbjct: 373 VDYAHTPDALQKTLQALRPLAEQRGGKLWCVFGCGGDRDITKRPQMGLVAEKFADHIIIT 432 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETV 472 DN RSEDP+ I I G+ I AI A+ + +D+++VAGKGHET Sbjct: 433 SDNSRSEDPQAIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADARDIVLVAGKGHETS 492 Query: 473 HIVTNGEKKMSVDCDIIREILG 494 + NG+ D + IR G Sbjct: 493 QEI-NGKTFDFSDQEHIRLAAG 513 >gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 414] gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 414] Length = 427 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 48/394 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D + T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDESIDEKTLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+K A FTN+ +DH+D+H + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F + ES I +K+ + N C + G + ++ K ++ Sbjct: 176 KELFFTD----ESLKFI------NKDALAIKFNV-CNAFTYGIENPALYQIKAYSLEEGI 224 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-------V 342 + + F PL G F +YN L+AA C+ + L +L+ L V Sbjct: 225 SAIAKNKDQTFHIDSPLLGLFNLYN-LLAASACV-----NELAKPNLKDLEKAISGFGGV 278 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP+M Sbjct: 279 CGRVEQV---AKG--VIVDFAHTPDGIEKVL---NTLKNKKLIVVFGAGGDRDKTKRPLM 330 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459 GKI A IAI+T DNPRSE+P+ I EI+ G + +R EAI+ A+E+ K Sbjct: 331 GKIVEHFAKIAIITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRKEAIKKALELKEKD 390 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D +I EIL Sbjct: 391 DLVVILGKGDETTQEI-KGVKYPFSDKVVINEIL 423 >gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia turicatae 91E135] Length = 506 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 143/470 (30%), Positives = 219/470 (46%), Gaps = 42/470 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR + + ++F A+ G DG FI AI QG+ IV ++ + D Sbjct: 28 EVEILGLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYD----- 82 Query: 87 RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 N + +D N +KF+S FA Y + +N I+ VTGT GKSSV ++ + + G+ Sbjct: 83 -PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNLKIIGVTGTDGKSSVCFYIYTLLKSMGV 141 Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++G ST+ F +D R +TP + LS + V + VE++SHG Sbjct: 142 ---KVGFISTV--FFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHG 196 Query: 194 LD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD RL I TN+ +H+++H T Q Y NAK+ LF II DD Sbjct: 197 LDIRTSRLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIINMDDK 256 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + A L F+ K+ + + +D L G F Sbjct: 257 NFSTFLNTINRAYTYSLENKNADFFV--SKINEQMGFTEFEFYHKNVKYDARVNLTGSFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTN-SRGGRIYVDYAHTSNSL 369 V N V A L + + + V E ++KL + G F G + + + +DYAHT + Sbjct: 315 VEN--VMAALIVVSQVMNVDVSELIDKLVNIEGLFGRMQGVDFGQDFSLIIDYAHTPGAF 372 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 I + ++ R+I VFG G+RD KR + G+IA +DI I+ D++PR ED +I Sbjct: 373 LKIFPIFKRLSKNRLISVFGSAGERDVLKRKLQGEIADRYSDIIILCDEDPRGEDSMQII 432 Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +I GI G FI +R AI AI + + D++V GKGHE Sbjct: 433 RDIAEGISGKTLNRDLFFIP--DRKSAIEKAINIAHTDDLVVTLGKGHEN 480 >gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella haemolysans ATCC 10379] Length = 498 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/465 (29%), Positives = 223/465 (47%), Gaps = 23/465 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N +S DSR + G +FVAI G DGH +I + I QGA A+V++S Y ++++ N Sbjct: 23 VNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQGA-ALVIASRY--ENYNV---EN 76 Query: 90 TPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++V+ K S+ A ++ + +AVTGT+GK+S+++ V + + G SS I Sbjct: 77 CAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSISTLVHNMLRTLGESSAYI 136 Query: 148 GPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G + A+ TTP + L + L + +++ EASSH + R+ + + Sbjct: 137 GTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEASSHAMALGRIYNVDID 196 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262 FTNL +H+D+H Q Y K LF L L + ++ DD+Y K + K + Sbjct: 197 VAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVLNKDDSYYKVISKCLYQ 256 Query: 263 AGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 V F I K ++ S EG F+ G+F V N L A Sbjct: 257 QEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGT-FECTTNYIGDFMVSNVLAA 315 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G ++ L KL + GR E +G + I D+AHT + E +L+ R Sbjct: 316 LIAVWVKGYSVEQLVAILPKLGALYGRMEIIG-DDLPIDIISDFAHTPDGYEKLLEATRE 374 Query: 379 ITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 + G R ++V G GG RD K P++G I + AD ++T D+PR ED E + I G+ Sbjct: 375 MRKGKRTLLVTGMGGGRDISKGPLIGDI-ISEADYVVITTDSPRDEDVEVLMGSIEKGMT 433 Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + + R +A++ IE+ DV+++A KG E I+ G+K Sbjct: 434 HKNYEKVWFRTDAVKRIIELSEPGDVVILASKGREDYEILQGGKK 478 >gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces himastatinicus ATCC 53653] Length = 538 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 148/484 (30%), Positives = 224/484 (46%), Gaps = 41/484 (8%) Query: 13 ELINQLSI----FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 EL +QL + P E + ++ DSR ++ G ++ A+ G + G F A Sbjct: 19 ELADQLGVDASGVPA---EAAVTGITHDSRAVRPGDVYAALSGARLHGADFA-AQAADLG 74 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGK 126 A V++ + +AT P+LVVDN R + A+ +Y + ++L +TGTSGK Sbjct: 75 AAAVLTDPDGAERAAAT---GLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGK 131 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRL----TTPSPIYLAKALSYLSS 179 ++ A V R+ GPT I + D R+ TTP L + + Sbjct: 132 TTTAYLVDGGL-RAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRE 190 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + V V +E SSH L R+DG F NL +H+++H + YF AK +LF + Sbjct: 191 RDVHSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKA-- 248 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGK 298 + +I DD Y + +++ + + G+ V I G+ Sbjct: 249 RSRAGVINYDDEYGRRLIEESEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGE 308 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P+ G F V NAL A GID + + + VPGR E V G+ Sbjct: 309 TVRAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDV----GQP 364 Query: 359 Y---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 Y VDYAH ++++E +L+ +R +T G++ V GCGGDRD+ KR MG AD A++ Sbjct: 365 YLAVVDYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGSAVARYADTAVL 424 Query: 416 TDDNPRSEDPEKIRAEIIHG---IPGFIEKG------NRIEAIRTAIEMLNKQDVLVVAG 466 T DNPRSEDP I A ++ G +P E+G +R AI A+ D ++VAG Sbjct: 425 TSDNPRSEDPLAILAAMLAGAAEVPSH-ERGDVLVEEDRENAIAAAVARAEPGDTVIVAG 483 Query: 467 KGHE 470 KGHE Sbjct: 484 KGHE 487 >gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni IA3902] gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni 305] Length = 427 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 206/398 (51%), Gaps = 56/398 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 61 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y A Sbjct: 116 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 175 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHN 287 K F + ES I D K ++ A G ++ YQ K L++ + + N Sbjct: 176 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISTIVTN 230 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LH 340 K Q F PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 231 KNQT--------FHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFG 276 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP Sbjct: 277 GVCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRP 328 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEM 455 +MGKI A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 329 LMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALEL 386 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 387 KENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 423 >gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 84-25] gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 404 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 141/398 (35%), Positives = 206/398 (51%), Gaps = 56/398 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 38 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 92 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + +E SSH L Q+R++G+ A FTN+ +DH+D+H T + Y A Sbjct: 93 TLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEA 152 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHN 287 K F + ES I D K ++ A G ++ YQ K L++ + + N Sbjct: 153 KELFFTD----ESLKFINKDALAIKFNVRNAFTYGIENPAL-YQIKAYSLEEGISTIVTN 207 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LH 340 K Q F PL G F +YN LVA+ C+ + LV L+ LEK Sbjct: 208 KNQT--------FHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFG 253 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ KRP Sbjct: 254 GVCGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTKRP 305 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEM 455 +MGKI A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 306 LMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIE--DRKEAIKKALEL 363 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 364 KENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 400 >gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Eubacterium saburreum DSM 3986] Length = 496 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 139/483 (28%), Positives = 234/483 (48%), Gaps = 47/483 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +++++ +FV I G D H I + + GA+A+VV R + ++ V Sbjct: 29 NTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAKAVVVERNIK--------RDDICVIKV 80 Query: 96 DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151 D+TR L+ ++ +G HP I+ +TGT GK++ + ++++ +++ IG Sbjct: 81 DSTRAALARLSAAYFG-HPAKKMKIIGITGTKGKTTSSYMLKKLLEQNAKVGL-IGTNGI 138 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T+ + TTP L K G +V +E SS + R++GIK G FTN Sbjct: 139 TVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEVSSQAVMLKRIEGIKFYIGIFTN 198 Query: 212 LGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 + DHI D H+ Y K F++ ++ ADD +S +++++ + Sbjct: 199 ISPDHIGPDEHKDFTEYLMYKSLFFKQC----EKTVVNADDEHSAYILEQSTSD--EKYE 252 Query: 270 VGYQGKFI-----HLKK----------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 G G F+ ++ K C+ + K + +S G D L +PGEF VYN Sbjct: 253 FGKCGDFVINNINYISKKDFLGTSFCISCSKNVKDKYRVSEVG---DILVGIPGEFNVYN 309 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A I + A++ L+ + V GR E V +S +I +DYAH + S E ++K Sbjct: 310 ALSALSAAIICRVKPAVLQTALKDIKV-NGRME-VAYSSHDIKIIIDYAHNAISTESLIK 367 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R R++VVFG GG+R + +R MG+I +AD ++VT DN R E E I A+I+ Sbjct: 368 TLRRYEPKRLVVVFGSGGNRSKDRRYSMGEICGKMADFSVVTADNSRYEKTEDIIADIVE 427 Query: 435 GIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + +I +R EAI A+E D++ + GKGHE + +G + +D +++ Sbjct: 428 KLSETGGKYITVPDRKEAIFYAMENSKPGDIIAIIGKGHEDYQEI-DGVRHHFLDREVVE 486 Query: 491 EIL 493 E L Sbjct: 487 ECL 489 >gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi N40] Length = 508 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 36/469 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ S+ + ++F A+ G DGH FI AI +G+ IV S L +S+ + T I Sbjct: 31 VTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNVIVCSR--DLDFYSSDV---TYI 85 Query: 93 LVVD-NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V D N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ ++G Sbjct: 86 KVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV---KVGF 142 Query: 150 TSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLD 200 ST+ S R +TP + LS + + +E++SHGLD RL Sbjct: 143 ISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLETARLI 202 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVM 257 + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS K + Sbjct: 203 DVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSDFKNAV 262 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 K++ + + FI K + + +G + L G F V N + Sbjct: 263 KKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNVENVMA 317 Query: 318 AAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A L I ID +++ L + + GR + + + + +DYAHT + + Sbjct: 318 ALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSKLFPIF 376 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I +I GI Sbjct: 377 KRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKDIAKGI 436 Query: 437 PGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 437 VNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM 14600] Length = 511 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 153/501 (30%), Positives = 233/501 (46%), Gaps = 67/501 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R+I VS DSR + G +F+ G +ED F+ A +GA + Y D Sbjct: 34 QREITLVSCDSRKVIPGTLFICKGAGFRED---FLRMAKERGAAFYLSEKPYEGVDL--- 87 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC-----Q 138 P + V + R ++ AS Y + E ++ +TGT GKS+ A F++ I Sbjct: 88 -----PWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTKGKSTTAFFLKAIFDVYEKS 142 Query: 139 RSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 R G S G STI ++ +R+TTP PI L + + G+ +V++E SS L Sbjct: 143 RGGRPS---GLISTILTEDGKESRPSRMTTPEPIELEEHFANAREAGLDYVTMEVSSQAL 199 Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 R+ ++ +F N+G DHI H T + YF +K+R+F + A+++ + Sbjct: 200 KYDRVLDVQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQC----RTAVVHLGVDH 255 Query: 253 SKEVMKRAHNA---------GCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKD 299 S+E++ A A R GY QG+ H K V G++ Sbjct: 256 SEEMLAAAQKARKVITFSETDERADVYGYGMKKQGRETHFKA------------RVLGQE 303 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 +++ +PG F V NAL A + GI V E L++ VPGR E S G+I Sbjct: 304 REYILGIPGFFNVSNALAAIAVAEHYGIPYDCVKEGLKRAR-VPGRME--EYTSADGKIV 360 Query: 360 --VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 +DYAH S E + + G RI+ +FG G + +R +G++A AD +T Sbjct: 361 TIIDYAHNRLSFEKLFAAAKEEFPGRRIVALFGASGGKAINRRRDLGEVAAANADYIYLT 420 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 +D+P EDP +I EI I F +R EAIRTAI + +L++AGKGHE + Sbjct: 421 EDDPGREDPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPTLLLLAGKGHEVM 480 Query: 473 HIVTNGEKKMSVDCDIIREIL 493 NG +K D D R+ L Sbjct: 481 VRRANGYEKGPSDADCARKYL 501 >gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus EPS] gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus EPS] Length = 517 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 147/501 (29%), Positives = 217/501 (43%), Gaps = 82/501 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----------QGAEAIVVSS 75 +ER + +DSR + AG F+A G DG + A+A +G +A Sbjct: 15 KERVQGALHADSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVDAFGFGE 74 Query: 76 AYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + + PI DN L ++LAVTGT+GK+S A ++ Sbjct: 75 DDRIASYPGLKAATGPIASAFYDNPSALL-------------DVLAVTGTNGKTSTAWWL 121 Query: 134 QQICQ--RSGLSSFQIGPTSTISSFAQD------------------NRLTTPSPIYLAKA 173 + R+ + P T A LTTP P+ + Sbjct: 122 AESLSTLRAAGGVRAMRPDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTTPDPVMMQGE 181 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L L +G ++EASS G+ + RLDG ++ FTN +DH+DYH + AY+ AK L Sbjct: 182 LRALVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAEL 241 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQ- 289 F P A+I DD + + +AG V +V GK L ++ Q Sbjct: 242 FR--WPGLRAAVINIDDMHGASLCANLVDAGIGALDVWTVSAGGKPARLVARDIGYDAQG 299 Query: 290 -------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 Q ++SVE + G++ V N L G A+G+ + + L V Sbjct: 300 LQFSVTEQGSVSVERLSTGLI----GQYNVANLLGVLGTLRALGLSLSRAVAACANLTSV 355 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKR 399 PGR E V VDYAHT ++L+ L +R + G + +FGCGGDRD KR Sbjct: 356 PGRMERVSVGGNAPLAVVDYAHTPDALDKALAGLRPLAQQRGGALWCLFGCGGDRDPIKR 415 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-------- 451 P+M +A AD IVT DNPRSE P+ I ++++ G +R +A + Sbjct: 416 PMMAAVAERQADHVIVTSDNPRSEKPDAIISQVLRGF-------SRSDAAQVQPDRAAAI 468 Query: 452 --AIEMLNKQDVLVVAGKGHE 470 AI QDV+++AGKGHE Sbjct: 469 ADAIAQAAPQDVVLIAGKGHE 489 >gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759] gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759] Length = 540 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 147/518 (28%), Positives = 236/518 (45%), Gaps = 63/518 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-------AYSLQDF 82 I ++ DSR + +FV G +G +I AI++GA I+++ Y Sbjct: 23 ICDIVDDSRQVSPNAVFVCRRGAVTNGRKYIGDAISRGAAGIIITDEVWDSEDVYDADSM 82 Query: 83 SATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQI 136 S ++ + ++V+ + R + + +G +P L V G +G + ++++ Sbjct: 83 SGSLGYYPDDFFVVVMHDKRYSIGRLCNNFWG-YPSRELTVIGVTGTKGKTTVTYMMKKV 141 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + IG +Q + TTP + L + L + S G +E SS G+ Sbjct: 142 LETCGCKTGLIGTIEVDDCSSQVQSVNTTPGVVQLHRILHNMVSNGARCCVMEVSSQGIM 201 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 R+ G+ G FTN+ DHI + H+T + Y K +F A+I DD Y+ Sbjct: 202 LGRVSGVDFDIGIFTNISPDHIGKNEHKTFEEYIRWKSTMFSMC----RYAVINMDDVYA 257 Query: 254 KEVMKRAHNAGCRVLS--VGYQGKFIHLKKVC--------------AIHNKQQVTISVEG 297 + G + S +GY G I K++ +++ Q+ ++ G Sbjct: 258 PCICNGIQVNGAKKCSGVIGY-GMNIWSKELYDKISEHMPVYDIHFSLYIGDQLAMAYNG 316 Query: 298 ----KDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + + + P +PG F VYNAL +G + V + LE + V Sbjct: 317 ITPGTECECVMPDGDRVPIHIDMPGLFNVYNALAVIAAGDVLGFPRSTVSKALEDI-CVR 375 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E RG +Y+DYAH SLE +LK +R+ G+I VFGCGG+R + +R MG Sbjct: 376 GRMECAAV-YRGAYVYIDYAHNPVSLENVLKTLRSYFGGKIFCVFGCGGNRAKSRRIGMG 434 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459 ++ +AD+ IVT+DNPR EDPE I +I G+ +I +R +AIR I Sbjct: 435 MVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLNAAGAEYIRIPDRKKAIRYGIVHAVAG 494 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497 DV+++AGKGHET V M RE++G IL Sbjct: 495 DVVLLAGKGHETYQDVMGHRTHMDE-----RELIGQIL 527 >gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 94a] Length = 508 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYS---P 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L+ + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + T+ R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Borrelia burgdorferi B31] gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi ZS7] gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi Bol26] Length = 508 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 224/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I ID +++ L + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia burgdorferi 72a] gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi CA-11.2a] Length = 508 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAIKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L+ + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + T+ R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia burgdorferi 118a] Length = 508 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ +V S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVVVCSRDV---DFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLFKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDLYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DSTRFEFYHKGVKYLANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L+ + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + T+ R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I + Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIILCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325] Length = 498 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 146/487 (29%), Positives = 235/487 (48%), Gaps = 32/487 (6%) Query: 13 ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 E+IN + I + + + +N +S DSR I G +FVAI G DGH +I + I QGA A+ Sbjct: 5 EVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQGA-AL 63 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 V++S Y +D++ N ++VV K S+ A + + +AVTGT+GK+S+ Sbjct: 64 VIASRY--EDYNI---ENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSI 118 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVT 183 ++ V + + SS IG + F +++ TTP + L + L + + Sbjct: 119 STLVHNMLRNLDESSAFIGT----NGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIK 174 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +++ EASSH + R+ + + FTNL +H+D+H Q Y K LF L S Sbjct: 175 NLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSE 234 Query: 244 A---IIYADDAY----SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 A ++ DD Y SK + + N + + + I K I+ Q S E Sbjct: 235 AKYGVLNKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPE 294 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G F+ G+F V N L A G ++ L L + GR E +G + Sbjct: 295 GT-FECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILG-DGLPI 352 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I D+AHT + + +L+ R I G R +++ G GG RD K P++G+I + AD I+ Sbjct: 353 DIISDFAHTPDGYKKLLEATREIRKGKRTLLLTGMGGGRDISKGPLIGEI-ISEADYVII 411 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 T D+PR ED E + I G+ + + R +A++ IE+ DV+++A KG E Sbjct: 412 TTDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILASKGREDYE 471 Query: 474 IVTNGEK 480 I+ G+K Sbjct: 472 ILKGGKK 478 >gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter mustelae 12198] gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter mustelae 12198] Length = 434 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 133/444 (29%), Positives = 205/444 (46%), Gaps = 60/444 (13%) Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRL---------------YGKHPENILAVTGT 123 L D S +S+ +L V+ +R + FA ++ Y P I+ +TGT Sbjct: 17 LSDDSREAQSDEAVLFVETSRN--AFFAEQMRKEGRDILHYRDLKEYFTFPAQIIGITGT 74 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQG 181 +GK++ A+ + + ++G +G Q LTTP + L + L+ L G Sbjct: 75 NGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILELYEDLALLHELG 134 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + +E SSH + Q R+ G+ A TN+ DH+DYH+T +Y K L Sbjct: 135 CEVLVMEVSSHAISQDRIFGLDFAAKILTNITSDHLDYHKTLASYIATK----NAFLSDG 190 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEG 297 II D+ + K + G +K C + +K T+ +G Sbjct: 191 GLKIINKDEENANFSPKNTKSYG--------------VKNPCDLQAKNFDKNHATLQYQG 236 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +++ PL G +YN ++A LC+ G++ +L L+ V GR E V N Sbjct: 237 REYMLKMPLYGLHNLYN-IMACVLCVRELFGLEMEQILSSLQDFGGVSGRMEVVCQNPM- 294 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + VD+AHT + +E IL+ + VVFG GGDRD+ KRP+MG + A V Sbjct: 295 --VIVDFAHTHDGIEKILQGF---LGQSLSVVFGAGGDRDRSKRPLMGGVVRKYAKKIYV 349 Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 T DNPRSEDP I +I+ GI G + +R EAI+ A++ ++L V GKG ET Sbjct: 350 TSDNPRSEDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALDHQEPGEILFVLGKGDETH 409 Query: 473 HIVTNGEKKMSVDCD---IIREIL 493 I+ + VD D +IRE+L Sbjct: 410 QILAD----RVVDFDDRMVIRELL 429 >gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptostreptococcus stomatis DSM 17678] Length = 495 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 143/480 (29%), Positives = 225/480 (46%), Gaps = 49/480 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q +E +I+ + DSR + IFVAI G DGH ++ A +G A VV+ L + Sbjct: 20 QLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAYQKGCRAFVVNDNMDLAE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA---SFVQQICQRS 140 + +++VD++R LS ++ +G +P L V G +G ++++ + +S Sbjct: 78 -----DAIMIIVDDSRNCLSHISANFFG-NPSKELKVIGVTGTKGKTTITNYLKSVLTKS 131 Query: 141 GLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 GL++ IG + + + TTP L K + + GV V++E SS GL R+ Sbjct: 132 GLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREMVDAGVKCVAMEVSSGGLMMERV 191 Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + + G +TNL DHI H T + Y + K RLF II DD ++ ++ Sbjct: 192 NHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFSLC----RHGIINIDDDHASYMI 247 Query: 258 KRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------F 304 +A S+ Y+ + I L + T + G DF ++ Sbjct: 248 DKA-TCDIETFSIKKPSDYRAEDISLTR----------TKTSLGVDFKYIRDGQASQTHI 296 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PGEF VYNAL +GID +L L V GR E + + + +DYAH Sbjct: 297 ASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQV-DGRVEVIPSIP-DITVVLDYAH 354 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SLE +L+ + R+I VFG G R +R +G +A L DI+I+T DNP ED Sbjct: 355 NGVSLENVLETLLKYKPRRLICVFGSIGGRSVLRRKELGDVAAKLCDISILTTDNPDDED 414 Query: 425 PEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P I +I + ++ +R +AI IE+ D+++VAGKGHE I+ +GE+ Sbjct: 415 PMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKGHEKYQII-HGER 473 >gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. NRRL B-14911] Length = 525 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 143/516 (27%), Positives = 245/516 (47%), Gaps = 48/516 (9%) Query: 3 LQDLIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 + D+ ++ + +L I Q P Q KIN +S DSR+ +FV + G DGH F+ Sbjct: 19 IMDIYFEQYGQLNIRQRWGSPSQ----KINSISYDSRNAGPQSVFVCMGGENHDGHTFLE 74 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 +AIA+GA + +A L++FS T L ++ R FL+ + +G+ E I + Sbjct: 75 EAIAKGAAVLAGENAAILEEFSRKFPELT-FLQTEDARAFLAQLSIIFHGRIHEKIHTVG 133 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKAL 174 +TGT+GK++VA+FV+ + G+ S IG +SS F Q TTP L Sbjct: 134 ITGTNGKTTVAAFVKSLMTALGIPSGSIGTNGVLSSMGPVSFVQSTP-TTPEASDLHAIF 192 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + +G ++E SS ++Q R GI TNL +H+++H+T + Y AK++LF Sbjct: 193 ADFAKRGDQLAAMEVSSVAIEQQRTAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLF 252 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNK-QQV 291 + A++ DD G ++ +QG + LKK A K + Sbjct: 253 RQ----AKRAVVNLDD----------EGMGADIIK-DFQGSLLTYSLKKDSAADVKASNI 297 Query: 292 TISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 ++ +G F+ P+ G + V N L A + +G ++E L ++ Sbjct: 298 RVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLSAICTAMHLGFTIGQIIEALPRVENP 357 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 GRFE + R +I +DYAHT +L+ +LK + + R+IV+ G RD+ K P M Sbjct: 358 SGRFEVLKEFGRR-KIIIDYAHTPVALKSLLKEAKKLPHKRLIVMITGIGIRDKEKMPQM 416 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLN 457 + + AD IV+ D+P DP ++ ++ G +++ R + + A+ + + Sbjct: 417 AQAVENQADQVIVSVDHPGFLDPWEVVGHVMKGFSNPRAGNILQEPTRRDGVLAALSVSD 476 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + D++++ IV GEK D +II+E Sbjct: 477 EDDLILLTSGCINGAQIV-KGEKIPHSDKEIIQEFF 511 >gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 297 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/278 (36%), Positives = 149/278 (53%), Gaps = 18/278 (6%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263 FTNL +DH+DYH+T + Y +AK LF +L +E A++ +DD ++E M+ + Sbjct: 2 FTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMR---ST 58 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V++ G I K + T+ + + L G+F VYN L A Sbjct: 59 AATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAG 118 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTI 379 + G+ ++ +++L VPGRFE V GG+ Y VDYAHT +SLE +LK + Sbjct: 119 LVSGVKLQTIIAVIKELAGVPGRFEVV----DGGQNYTVIVDYAHTPDSLENVLKTAKQF 174 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 G + + GCGGDRD+ KRPIM +A A AI T DNPRSEDP I +++ G G Sbjct: 175 AKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASGN 234 Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 + +R EAI AI + D++++AGKGHET I+ Sbjct: 235 NYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQII 272 >gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia sp. SV1] Length = 508 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 138/474 (29%), Positives = 225/474 (47%), Gaps = 38/474 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S DF + S Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNVIVCSRDV---DFYS---S 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV + + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYHIYLLLKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 ++G ST+ S R +TP + LS + + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSNMVKNEAQYAILESTSHGLDLE 197 Query: 198 --RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y N K+ LF + +I DD YS Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGFGVINLDDFYSSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKT-----DFTRFEFYHKGVKYFANVNLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L+ + + GR + + + + +DYAHT + Sbjct: 313 ENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMDSINL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + T+ R+I VFG G+RD KR + G+IA +D+ ++ D++PR E+ I + Sbjct: 372 LFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYSDLIVLCDEDPRGENSMCIIKD 431 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI +E +R +AI AI + D++V GKGHE+ I N E Sbjct: 432 IAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVALGKGHESSIIYKNRE 485 >gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Thermus scotoductus SA-01] Length = 486 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 139/477 (29%), Positives = 227/477 (47%), Gaps = 48/477 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ ++ DSR ++ G++FVA++G DGH FIP+A+A+GA A+V SL Sbjct: 18 RVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIPEALAKGAIAVVGERELSLP-- 75 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139 P L V + R+ L+ A +G+ P+ +L +TG+ GKS+ AS + + Q Sbjct: 76 -------VPYLRVGDAREALAHLARHFFGE-PDRKLALLGITGSKGKSTTASLLHHLLQA 127 Query: 140 SGLSSFQIGPTS-TISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + + + A+ N TTP + L +G+ +E SSH L Sbjct: 128 GEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQVYGFLREAVERGLEAAVLEVSSHALAL 187 Query: 197 HRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R++G+ G F + DH+D H T +AYF AK L E + A++ + K Sbjct: 188 KRVEGLSYRIGVFVSFYPDDHLDLHGTAEAYFAAKALLVE----RSHLAVLNTRLPHLKR 243 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ R H L G G+ + + + + T+ + P+ G + + NA Sbjct: 244 LLPRPH------LLFGPGGE-VWGEGLREGEEGLRFTLHTPWGSGEAFLPMLGRYNLDNA 296 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A+ +A G+ VL+ L VPGR E V + R+ +D+AHT SLE LK Sbjct: 297 LAASAAALAYGLSLERVLQGLATFRGVPGRMEVV--QRKPFRVVIDFAHTGKSLEEALKT 354 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R T GR+++V G G+RD +R +G++A LAD T+++ R+ED + I + Sbjct: 355 LRATTRGRLLLVVGAAGERDPRRREDIGRVAARLADKTFFTEEDHRTEDLQAILEALAKA 414 Query: 436 IPGFIEKG-------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 E+G +R EAI A+ + D +++AGKGHE H + G + D Sbjct: 415 A---REEGGLYELIPDRKEAIFCALSEAREGDTVLLAGKGHE--HTLERGTLALPWD 466 >gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Renibacterium salmoninarum ATCC 33209] Length = 541 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 145/476 (30%), Positives = 234/476 (49%), Gaps = 46/476 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S DSR I G +++A+ G++ G F A+A GA AI+ A + Q SA + Sbjct: 41 QVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAILTDRAGA-QIASAEVPQ 99 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+L V R A+++Y + ++ +TGT+GK++ + ++ I SS IG Sbjct: 100 HVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSGLIG 159 Query: 149 PTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI A + + LTTP + ++ ++ + + V +E SSH L R+DG+ Sbjct: 160 ---TIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVF 216 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL +DH+D H T Y K LF K A++ DD + +++ RA Sbjct: 217 DVAGFTNLTQDHLDLHGTMAEYAATKAELFSSRRSKR--AVVTVDDQWGRQIAARAD--- 271 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEG-------KDFDFLFPLPGEFQ 311 VL + Q L+ + I + G + F F LPGEF Sbjct: 272 VPVLRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAERSFKFTTSLPGEFN 331 Query: 312 VYNALVAAGLCIAIGIDSALV---LEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSN 367 + N+ +A + A G+D+ + L+ + L + VPGR + + S+ VD+AH + Sbjct: 332 IANSALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLI---SQEPVAVVDFAHNPD 388 Query: 368 SLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +L+ + +R T GR+I VFG G RDQ KRPIMG +A +D+ I+TDD+P ED Sbjct: 389 ALQRAMDAVRPNNNETRGRLITVFGATGQRDQTKRPIMGALAARGSDVVIITDDDPHDED 448 Query: 425 PEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 PE+IR ++ G ++ G R AI A+ + K D +++AG+GHE Sbjct: 449 PEQIRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGKDDAILIAGRGHE 504 >gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter showae RM3277] gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter showae RM3277] Length = 430 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 198/399 (49%), Gaps = 55/399 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAK 172 I+ +TGT+GK++ A+ IC + G T +F D++ T S I + Sbjct: 61 IIGITGTNGKTTTAAL---ICATLLNLGYGCGLCGTRGAFINGERIDDKALTTSEIL--R 115 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 LSYL S +G + +EASSH + Q R++ + FTNL +DH+DYH T + Y Sbjct: 116 TLSYLKAASERGCEYFVMEASSHAIAQKRIESLDFAMKIFTNLTQDHLDYHGTFEEY--- 172 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKF-----IHLKK 281 R+ E ++P +I DD + NA L G++ IH Sbjct: 173 -ARVKSEFFADDAPKLINIDDRGG--IKFNPANALTYALHANADFAPGEYSLEGGIH--- 226 Query: 282 VCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEK 338 CA+ + Q+ +S L GEF +YN L+AA C+A D L + K Sbjct: 227 -CALKTPRGQMALSSN---------LHGEFNLYN-LIAAASCVATLTDRPLEQIALAASK 275 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V SR + VD+AHT + +E +L +R +I+ VFG GGDRD+ K Sbjct: 276 FDGVEGRMEVV---SREPLVIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIE 454 RP MG IA A +VT DNPRSE+PE I AEI G+ E+ NR EAI+ A+E Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLE-MNERVKCIANRKEAIKYALE 388 Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 L + ++LV+ GKG ET + G K D ++RE+L Sbjct: 389 SLAQDEILVILGKGDETYQEI-KGVKYPFSDKQVVRELL 426 >gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans DSM 20603] Length = 534 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 140/474 (29%), Positives = 215/474 (45%), Gaps = 48/474 (10%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSL-QDFSATIRSNTPILVVDN 97 ++ G +FVA+ G + G +I QAI GA ++ A Y + ++ A++ P+LVVD+ Sbjct: 40 VRPGDLFVAVAGQRSHGAQYIEQAIHAGARGVLTDEAGYRIARELDASVGHELPVLVVDD 99 Query: 98 ---TRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQIGPTST 152 R+ A+ +YG+ + T + F+ I + +G + +G T Sbjct: 100 GHDVREIAGQVAATIYGQPAARLTTAGITGTNGKTTTTFFLDAILRTAGHHTGLMGTVET 159 Query: 153 I--SSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 R T +P +LA+ L + VT VS+E SSH L HR+ G + Sbjct: 160 RLGDHTVSSTRTTVEAPELQGFLARCLE----EEVTAVSMEVSSHALALHRITGTQFDVV 215 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 FTNL RDH+D+H + YF AK +LF + +I DD + ++ +A V Sbjct: 216 GFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARA--GVINVDDDWGVQLHHQATIDTWSV 273 Query: 268 LSVGYQGKFIHLKKVCAI-------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + + +H + Q V G+ LPG V NA +AA Sbjct: 274 ATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHGQRLRCHSALPGTVNVANAALAAL 333 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377 + G+ + E L LH +PGR E V ++ I VDYAHT+ +L+ L ++R Sbjct: 334 MARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPLTI-VDYAHTAEALDFALSSLRQDL 392 Query: 378 ------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + T G + VV G GDRD KRP MG +A LAD+ + DD+P ED IR + Sbjct: 393 AARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAARLADVVYIADDDPHGEDRATIRQD 452 Query: 432 IIHG-------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 ++ G I E R AI I + D++++AG+GHETV Sbjct: 453 LLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAAASDGDIILIAGRGHETV 506 >gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC 51333] Length = 516 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 137/483 (28%), Positives = 220/483 (45%), Gaps = 41/483 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPIL 93 D+R ++ G +FVA+ G G F A ++GA A++ A L D + P + Sbjct: 46 DNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAGMAFLTDL------DIPAI 99 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPT 150 +V + A+ + + + + A T + ++ + R G LSS Sbjct: 100 IVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVE 159 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + +TTP L + + V H+ VE SSH L R+D + FT Sbjct: 160 AAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFT 219 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---V 267 NL +DH+DYH T + YF K LF + + +I D + + + ++ +G Sbjct: 220 NLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVT 277 Query: 268 LSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LV 317 LS+ +QGK I L + + +GK+ +PG F NA +V Sbjct: 278 LSLTGRPADWQGKIIELDG----GYTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMV 333 Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 GL + +L HL + VPGR E + R + VD+AH +S +++L Sbjct: 334 VTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLD 390 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ Sbjct: 391 TMRISTKGRLLLVMGADGQRDSGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMA 450 Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ G F+E R AI AI +D +V+ G+GHE++ G+ + D + R Sbjct: 451 GMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAR 509 Query: 491 EIL 493 E L Sbjct: 510 EAL 512 >gi|301165430|emb|CBW25001.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase [Bacteriovorax marinus SJ] Length = 461 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 127/396 (32%), Positives = 199/396 (50%), Gaps = 59/396 (14%) Query: 92 ILVVDNTRKFL---SLFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQI 147 I VVD + FL L A+ +Y + LA +TGT+GK++V+ Q+ G S I Sbjct: 80 IWVVDPS-DFLWAQDLIANEIYPDKLKIKLAGITGTNGKTTVSYLAMQLATLLGYPSISI 138 Query: 148 GPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 G S +D TTPS + L K + + + +E SSH L Q+RL+ ++L Sbjct: 139 GTIGVRDSKNILEEDILSTTPSYLELRKII-HRYQDDYKFIFMEVSSHALAQNRLNKVRL 197 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPKESPAII--YADDAYSKEV 256 + ++T+ +DH+DYH+T + YF AK+++ E ++P +++ AD+ S+++ Sbjct: 198 KSCAWTSFSQDHLDYHKTNEEYFKAKLKILESSDDKNLIVPSSEKSLLALLADNNVSRKI 257 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ + L G++ + Q +SV A+ Sbjct: 258 VEPYFD---ECLEAGFKASY------------NQANLSV-------------------AI 283 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 + I ID L L KL + GRFE + N + VDYAHT ++LE I I Sbjct: 284 ALCEVLIGESIDRKL----LSKLSLPAGRFEAIKYNEHI--VIVDYAHTPDALENICGTI 337 Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 + +S + V+FGCGGDRD+ KRP+MGK AD IVT DNPR+E+P I +I G Sbjct: 338 KKDFSSFELRVIFGCGGDRDRSKRPLMGKAVSKYADNIIVTSDNPRTEEPSSIIDDITPG 397 Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I +I +R AI ++E L++ V+++AGKGHE Sbjct: 398 ISRDYIRIEDRRLAIEKSLEDLSRPTVVLIAGKGHE 433 >gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii ATCC 43063] gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 516 Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 137/483 (28%), Positives = 220/483 (45%), Gaps = 41/483 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPIL 93 D+R ++ G +FVA+ G G F A ++GA A++ A L D + P + Sbjct: 46 DNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAGMAFLTDL------DIPAI 99 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPT 150 +V + A+ + + + + A T + ++ + R G LSS Sbjct: 100 IVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVE 159 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + + +TTP L + + V H+ VE SSH L R+D + FT Sbjct: 160 AAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFT 219 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---V 267 NL +DH+DYH T + YF K LF + + +I D + + + ++ +G Sbjct: 220 NLSQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVT 277 Query: 268 LSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LV 317 LS+ +QGK I L + + +GK+ +PG F NA +V Sbjct: 278 LSLTGRPADWQGKIIELDGGFT----ELRLRAFDGKEASVQVRMPGTFNAINAALAIVMV 333 Query: 318 AAGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 GL + +L HL + VPGR E + R + VD+AH +S +++L Sbjct: 334 VTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLD 390 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 +R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ Sbjct: 391 TMRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMA 450 Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 G+ G F+E R AI AI +D +V+ G+GHE++ G+ + D + R Sbjct: 451 GMKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAR 509 Query: 491 EIL 493 E L Sbjct: 510 EAL 512 >gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Prochlorococcus marinus str. MIT 9313] gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus str. MIT 9313] Length = 507 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 185/356 (51%), Gaps = 37/356 (10%) Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 P + ++FA +RL LA+A+ + GV +E SSH L+Q R+ G + Sbjct: 155 PATHTTAFA--DRLQA----QLAQAVEAGAELGV----MEVSSHALEQQRVAGCRFAGAV 204 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCR 266 FTNL +DH+DYH + +AYF AK +LF L + + A++ D + + +R + R Sbjct: 205 FTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESGSAKAVVNIDSPWGARLAQRLGDTCWR 264 Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVYNAL 316 L+ G L++ A ++T+S +G + F PL G F + N L Sbjct: 265 SSLAEGV------LQQADAELKMTELTMSSDGVQGRLISPCGEGWFDSPLMGRFNLMNLL 318 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMI 372 A G+ + G+ L+L+ + VPGR E V ++ + VDYAHT + LE Sbjct: 319 QAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADATQVPTVLVDYAHTPDGLENA 378 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432 LK R TS + VFGCGGDRD+GKR M IA LAD +VT DNPR+EDP++I A++ Sbjct: 379 LKASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQILADV 438 Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 + GIP + +R AI AI DV++VAGKGHE I+ G K+ D Sbjct: 439 VAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVLVAGKGHEDYQIL--GTSKVHFD 492 >gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas autotrophica DSM 16294] gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas autotrophica DSM 16294] Length = 431 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 125/406 (30%), Positives = 196/406 (48%), Gaps = 46/406 (11%) Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTT 164 + L+G + I+ +TGT+GK++ AS + G + G + LTT Sbjct: 54 AELFGVNKIKIIGITGTNGKTTTASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTT 113 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 PS + K + G + +E SSH L Q R++G+K TN+ +DH+DYH+T + Sbjct: 114 PSVLNTYKHIYQAVCAGCEYFIMEVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIE 173 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----------VLSVGYQG 274 Y K F++ ES +I D+ + K A+ G L+ G G Sbjct: 174 EYIAVKNGFFQD----ESKKLINKDEPKAAFNFKNAYTYGIENPATYRLMAYSLNEGSSG 229 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--V 332 H +++ F L G F +YN L+AA + D L + Sbjct: 230 IIQHFQEIVP-----------------FTASLHGFFNLYN-LMAAIAATHLITDKTLEEI 271 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + ++ V GR E V + VD+AHT + ++ +L ++ +IVVFG GG Sbjct: 272 ADVVDNFAGVSGRMEQV---CAAPNVIVDFAHTPDGMQQVLNALK---EKELIVVFGAGG 325 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAI 449 DRD+ KRPIMG++A LA IVT DNPR EDPE I +I+ GI I + NR +AI Sbjct: 326 DRDRLKRPIMGRVAASLAKKVIVTSDNPRHEDPEIIIDDILEGIQDKTNIIVELNRKKAI 385 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + A++M ++V+V+ GKG E ++ + EK D ++++E+L L Sbjct: 386 QMALDMQEDEEVVVILGKGDEAYQVIYD-EKFAFDDREVVKELLNL 430 >gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus maricopensis DSM 21211] Length = 486 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 146/495 (29%), Positives = 229/495 (46%), Gaps = 60/495 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL +L++ P + V+ + ++ G+ FVA+ G + DGH F+ Sbjct: 1 MKLHDLAA--------ELNLTPPA-ENPDVTGVTHHAGWVRPGFAFVAVRGARVDGHAFM 51 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +A A GA V L D + S P + V R L+ A+ L G HP + Sbjct: 52 AEAAANGA---VCVFGEGLPD---GVPSPLPYVRVPGARAALADAAAALAG-HPSRALRV 104 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYL 170 + +TGT GK++ + + + + +G+ + G ST+ D L TTP + Sbjct: 105 VGITGTDGKTTTSWITRHLLRAAGV---RTGLLSTVGYELPDGALRHFPAHFTTPEAPEV 161 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 LS + + G V +EASSH L R+ + +T+L +H+D+H T + YF K Sbjct: 162 QSTLSEIGASGGEAVVLEASSHALALDRVRAVDWDVAVWTHLTSEHLDFHGTVEQYFADK 221 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHN---------AGCRVLSVGYQGKFIHLKK 281 RL E + +++ ADD ++ ++ RA A R + + +H Sbjct: 222 ARLVE----RARFSVLNADDPWTAQLRPRAAAYVTYGVEDVADWRAGDIEERSTGLHFHV 277 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + +FD P+ G F V+NAL A +G ++ L Sbjct: 278 LSPL------------GEFDAHLPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRG 325 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRP 400 VPGR E V G R+ VD+AHT SLE L+ +R+ T GR+IV+ G GG RD GKR Sbjct: 326 VPGRMELVPGGDAGVRVVVDFAHTPPSLEKALEALRSTTRGRLIVLLGSAGGPRDPGKRA 385 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM 455 +G++A LAD AI T+++ R + I E+ G F +R +AIR A+ + Sbjct: 386 PLGEVATRLADTAIFTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVAL 445 Query: 456 LNKQDVLVVAGKGHE 470 D +++AGKG E Sbjct: 446 ARPGDTVLLAGKGPE 460 >gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 299 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 152/285 (53%), Gaps = 14/285 (4%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESPAIIYADDAYSKEVMKRAHNA 263 FTN+ +DH+DYH+T + Y +AK LF +L K AII DD + + H+ Sbjct: 8 FTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFFI---HST 64 Query: 264 GCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V++ G Q + + + HN T+ + L G F +YN L AA Sbjct: 65 AAHVVTYGVSQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVLAAAASA 124 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 G+ + L+ ++ V GRFE V + + VDYAHT +SLE +LK I TIT Sbjct: 125 NISGVPLKNIKAALQSINGVSGRFEQVEA-GQDFSVIVDYAHTPDSLENVLKTIETITDE 183 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440 +IVV GCGG+RD+ KRPIM +IA D + T DNPR+EDP I A++ G+ +I Sbjct: 184 NVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTGLKHTNYI 243 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 +R EAI A+ + K DV+++AGKGHET I+ G+ S D Sbjct: 244 VIIDRQEAINHAVSLAGKGDVVLIAGKGHETYQII--GDAVTSFD 286 >gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bulleidia extructa W1219] Length = 491 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 146/489 (29%), Positives = 236/489 (48%), Gaps = 35/489 (7%) Query: 1 MKLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59 MKL DL+ ++ NQ+ + E I +S DSR IQ +F + G DGH F Sbjct: 1 MKLVDLL-----DVKNQIYHLIQGTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQF 55 Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---N 116 A +GA +V S ++ P++ V++ K ++ A R Y P + Sbjct: 56 AKMAEEKGAVCLVASKHVDVK---------IPVVYVEDVIKTMAFLAMRFYHD-PSGSMS 105 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPSPIYLAKA 173 ++ VTGT+GK++ ++ + +++ S IG + Q++ T TP + L K+ Sbjct: 106 LIGVTGTNGKTTTTHIIRHLFEKNKKSCGMIGTNGIW--YHQEHIYTPNTTPDSLTLQKS 163 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + +GV + E SSH L R+ + FTNL +H++ H T Y AK L Sbjct: 164 LAKMKEEGVFICTSEVSSHALVMGRVQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLL 223 Query: 234 FEELLPKESP--AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F +L + AI+ DD Y+K + R NA S + K + + +K + Sbjct: 224 FAQLGSGNNGKIAILNKDDTYAKVIASRC-NATIWYYSTKDPSAEFYAKDMVYLASKTEF 282 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T+ +G ++ + PL GEF V NAL A A+ +E L V GR + + Sbjct: 283 TLVFQGLEYPVISPLIGEFNVQNALAALAAYYALERHLEKGIEALSSFSGVEGRMQTI-E 341 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLA 410 N G VD+AHT + LE + ++ + RII + G GG+RD R +G+IAL+ + Sbjct: 342 NDLGIHAIVDFAHTPDGLEKAMAALKKLNHKRIITMIGHDGGNRDNSIRQDLGRIALEYS 401 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D + T +NPR EDP KI E+++G+ F++ +R +AI + + K D+L G Sbjct: 402 DYVVFTSENPREEDPMKIMKEMVNGLEVHHYEFVK--DRHKAIDRVVALGQKGDILFFTG 459 Query: 467 KGHETVHIV 475 KGHE ++ Sbjct: 460 KGHEPYQLI 468 >gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299] gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299] Length = 462 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 146/460 (31%), Positives = 221/460 (48%), Gaps = 22/460 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +++DSR + G +FV IVG K DGH F A+A GA AIV + Sbjct: 3 EVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAAGAVAIVCERPID------GLGV 56 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P +VV + R L A+ YG ++ + VTG SGK++V V+ I + + Sbjct: 57 DVPQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRCGV 116 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 IG T+ S D ++P + + ++ + G ++E SS L Q R+D Sbjct: 117 IG-TTGYSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDFDV 175 Query: 207 GSFTNLGRDHIDYHQTQQAYF-NAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAG 264 FTNL DH H+ A NA LF L P+ A+I D + +++ K +A Sbjct: 176 AVFTNLRGDH---HEGDAASCRNATAELFRRLTDPERQRAVINLDVSTAEDGEKPFDDAA 232 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + F+ + VTI FD + L GE V N A IA Sbjct: 233 YFSEAASAADVFVERADLSLFETA--VTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIA 290 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 + I ++ E +E + PGR E V + + VDYA T +L+ ++++R + + Sbjct: 291 LEIPLDVIAEGVEAMEPAPGRMELV-DEGQPFSVVVDYAQTPEALKRAIESVRKTGANNV 349 Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443 I VFGCGGDRD KR MG++A + +DI VT+DNPR+EDP KI +I + + Sbjct: 350 ITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDITMKLQNMCRRYV 409 Query: 444 --NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +R AIR AI M + D +++ GKGHE +V G KK Sbjct: 410 IVDRFYAIRAAIAMAGEDDAVLICGKGHEDYIVV--GTKK 447 >gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 550 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 151/485 (31%), Positives = 238/485 (49%), Gaps = 52/485 (10%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P + + +S +SR ++ G ++VA+ G G F QAI GA AI+ A + Sbjct: 47 VVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAAAILTDDAGA- 105 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQ 134 + + + + P+LVV R + ++ +Y + P + VTGT+GK++ F+ Sbjct: 106 RLLALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNGKTTTTYFIT 165 Query: 135 QICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G + IG ++ + + LTTP + L+ + G+T ++E SSH Sbjct: 166 SLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTAAAMEVSSHA 225 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + R+DG+ FTNL +DH+D H T + YF K LF ++ A++ DD + Sbjct: 226 ISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTPARARK--AVVTVDDEWG 283 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFP----- 305 + + AG + V I L VT + G +F P Sbjct: 284 RRL------AGAAAVPV------ITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRL 331 Query: 306 -----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGG 356 LPG F V NA +AA + +A G+D+A + L+ VPGR + V S Sbjct: 332 RVHTGLPGTFNVANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLV---SEQP 388 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VD+AH +++L L+ +R+ G R+IVVFG G RDQGKRP MG IA LAD IV Sbjct: 389 AAVVDFAHNTDALARALEAVRSPEPGSRLIVVFGATGQRDQGKRPAMGAIAARLADTVIV 448 Query: 416 TDDNPRSEDPEKIRAEIIHG---------IPGFIEKG-NRIEAIRTAIEMLNKQDVLVVA 465 TDD+P ED IRA+++ G +P +E+ R +AI+ A+E+ +D ++VA Sbjct: 449 TDDDPHDEDAAAIRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTILVA 508 Query: 466 GKGHE 470 G+GHE Sbjct: 509 GRGHE 513 >gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Borrelia garinii Far04] Length = 508 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 46/478 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRD---MDFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI-- 138 Query: 145 FQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 ++G ST+ F D R +TP + LS + V + +E++SHGLD Sbjct: 139 -KVGFISTV--FLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLD 195 Query: 196 QH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 196 LETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYY 255 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 K +K++ + + FI K + + +G + L G F Sbjct: 256 SDFKNAVKKSFTYSLKSNKADFFVSFIDEKI-----DSTRFEFYHKGVKYSANVSLLGSF 310 Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAF 369 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + R+I VFG G+RD KR + G+IA + +D+ I+ D++PR E+ I Sbjct: 370 SKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADNYSDLIILCDEDPRGENGMCII 429 Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +I GI FI +R AI AI + D++VV GKGHE+ I N E Sbjct: 430 KDIAKGIVNKVINQDLFFIP--DRKLAIEKAISLARAGDLVVVLGKGHESSIIYKNRE 485 >gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 506 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 135/478 (28%), Positives = 230/478 (48%), Gaps = 23/478 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ V+ DSR +Q FV I G K DGH F+ AI GA + SA L+ Sbjct: 21 KRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGAAVLAGESAEVLEKAGRKY 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 T ILV D R FL+ + Y + EN+ + VTGT+GK++V ++V+ + G + Sbjct: 81 PDRTFILVED-ARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPT 139 Query: 145 FQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T ISS N TTP L +G +E SS Q R++ Sbjct: 140 GSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVE 199 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKR 259 GI+ TNL +H+++H+T + Y AK++LF++ A++ DD+ +K+++K Sbjct: 200 GIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ----AKKAVVNIDDSGMAKDILK- 254 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 H+ S+ + + + I ++ + + + + P+ G++ V N L A Sbjct: 255 IHSGDVLTYSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANILAA 314 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + G +L L + GRFE + T +I +DYAHT +L+ +L+ ++ Sbjct: 315 VCTALHSGYSIHQILLALTSIEGPEGRFELL-TEYGNRKIMLDYAHTPAALDNLLREVKK 373 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + R+IV+ G RD+ K P+M + AD +V+ D+P DP++I + ++ G Sbjct: 374 LEYNRLIVLITGIGLRDKSKMPLMAETVEGRADEIVVSVDHPDFNDPDEIISNVLAGFSN 433 Query: 439 ------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 + E+ R EA+ +A+ + N+ D++++ IV E S D D+I+ Sbjct: 434 PSADNIYTER-TRAEAVLSALALSNENDLVLLTSGCINGAQIVEGKEIPHS-DKDLIK 489 >gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 [Anaerococcus vaginalis ATCC 51170] Length = 476 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 222/476 (46%), Gaps = 31/476 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85 +++I VSS+S+ I+ +IFVAI G + DGH +I A+ GA IV ++ ++ Sbjct: 20 DKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENGASTIVYTNDDVEFKNEINY 79 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I+ L + FLS F S+ ++ VTGT+GK++ A+ V + + G + Sbjct: 80 IKVEDARLALAKISNFLSDFPSK-----SLRMIGVTGTNGKTTTANIVSFLLNKLGETCA 134 Query: 146 QIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T +F L TTP + L+ G+ +V +E SSHGL R G Sbjct: 135 NIG---TDGAFFNGKTLPTEHTTPEITDINYILNEAKKDGIKNVVMETSSHGLCLKRNYG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I G FTNL +H+DYH+T YF AKM LL ++ DD Y K+ + Sbjct: 192 IAYEYGVFTNLSPEHMDYHKTMDNYFKAKMI----LLNHSKKQVVNLDDDYGKKAKEIFK 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A ++ K ++K+V + V G F G + +YN+L A + Sbjct: 248 DALTISINEDSNYKAENIKRV-----DMGLEFFVNG--VKFHLKRFGMYDIYNSLCAIAI 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +G + + LE V RFEF+ N G I VD+AHT+ S E + K++ Sbjct: 301 ANDLGFKLEEISKALEGFKGVKSRFEFI-ENDLGINIVVDFAHTTTSFESLYKDLP--KD 357 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437 + V+G GDR R +G+I+ +++T D+P+ + E I +I G+ Sbjct: 358 RKKFAVYGISGDRTPDIRRGLGRISAKYDIFSVITTDDPKFDTFENISNQIKEGVEENNG 417 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 I NR EAI+ AI K D + + GKG E + K + + IRE+L Sbjct: 418 ECIIIRNRKEAIKYAISHAKKGDFVFMLGKGEEDFLKLKANIKTYYNEKETIREVL 473 >gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus SK58] gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Micrococcus luteus SK58] Length = 599 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 149/510 (29%), Positives = 225/510 (44%), Gaps = 91/510 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR ++ G ++VA+ G G F A+ GA ++ +A + ++ Sbjct: 69 VTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 127 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L VD R A+R+YG + ++ VTGT+GK++ + + + G S Sbjct: 128 APVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGI 187 Query: 147 IGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G T I + ++ + LTTP L ++ + + V +E SSH + R+ G++ Sbjct: 188 VG-TILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRY 246 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---VMKRAH 261 FTNL +DH+D H + Q YF AK LF+ + A+I D M RA Sbjct: 247 AVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPA--RTDHAVITLDGGEGPRWGVAMARAA 304 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNK-----------------QQVTI--SVEGKDFDF 302 A L++G A H+ + T+ + G++ Sbjct: 305 GAPVTTLALGPAAP---TPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRA 361 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--------------PGRFEF 348 LPG F V NA +A L + A+ EHL+ L V PGR E Sbjct: 362 SVGLPGRFNVANAALAVLLVL-----HAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEV 416 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMG 403 VG R VD+AH + + L+++ + GR ++VFG GDRD+ KRP+MG Sbjct: 417 VG---REPDAVVDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMG 473 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------- 452 IA AD+ IVTDD P SEDP IRA I+ G R EA R A Sbjct: 474 AIAARAADVVIVTDDTPHSEDPAPIRAHIL--------AGARAEADRIAREEGRPVVIEE 525 Query: 453 -----------IEMLNKQDVLVVAGKGHET 471 +E+ QD +++AG+GHET Sbjct: 526 VADRAAAIRRAVELAGPQDGILLAGRGHET 555 >gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus geothermalis DSM 11300] gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis DSM 11300] Length = 488 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 145/488 (29%), Positives = 225/488 (46%), Gaps = 39/488 (7%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P+L LS + ++ V+ + ++ G++FVAI G + DGH F+P+ A+GA A Sbjct: 3 LPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVA 62 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKS 127 ++ + A + S P L V N R L+ A+ L G HP ++ VTGT GK+ Sbjct: 63 VLG------EGLPADVASPLPYLSVPNARAALADAAAALAG-HPSRALKVVGVTGTDGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQ 180 + + + + + +GL + G ST+ D L TTP + L L Sbjct: 116 TTSWLTRHLLRAAGL---RTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEA 172 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G +EASSH L R+ G+ +T+L +H+D+H T + YF K +L E + Sbjct: 173 GGEAAVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIE----R 228 Query: 241 ESPAIIYADDAYSKE---VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ DD ++ + V + +Q + I ++ +H + + Sbjct: 229 APFAVLNVDDPWTAQLRGVAPQETTYSAENQHADWQARHIE-ERATGLHFQVASPLG--- 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F P+ G F V NAL +G ++E L VPGR E V + R Sbjct: 285 -EFAAHLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPR 343 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD+AHT SLE L +R T GR+ V+ G GG RD GKR +G++A LAD A+ T Sbjct: 344 VIVDFAHTPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEVATRLADHAVFT 403 Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +++ R I E+ G F +R EAIR I D +++AGKG E Sbjct: 404 EEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKGPED 463 Query: 472 VHIVTNGE 479 + NGE Sbjct: 464 T-LERNGE 470 >gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Butyrivibrio proteoclasticus B316] Length = 495 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 227/480 (47%), Gaps = 32/480 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V +D+R I G +F+ I G DGH +A + A AIVV D Sbjct: 29 EIKDVVNDNRKISEGSLFICIKGANFDGHSCAMEAANKKAAAIVVE-----HDVELPGDC 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ V+NTR ++ F S Y HP L G +G + I + ++G Sbjct: 84 KIAVIRVENTRYAMA-FISAAYFDHPARKLKTIGITGTKGKTTTTYLIRNMLENAGHKVG 142 Query: 149 PTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 TI + + TTP L + ++ + G V +E SS GL HR G Sbjct: 143 LIGTIEVIIGEEHIHAENTTPESFALQEYMARMVEAGCDSVVMEVSSQGLMLHRTQGFIF 202 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G FTN+ DHI + H+ + Y + K LF++ I DD ++ ++++ H Sbjct: 203 DIGIFTNIEPDHIGPNEHKDFEDYMHCKGLLFKQC----RIGICNGDDIHTDDILE-GHT 257 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGK-DFDFLFPLPGEFQVYNALV 317 C+ + G+ G+ + L+ + + ++ V EG + PG+F VYNAL Sbjct: 258 --CKAYTYGF-GEGLDLRAINLAYIRKPGELGVFFDTEGLINMHAEIRTPGKFSVYNALC 314 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +G + L+ V GR E V + + +DYAH + +L+ +L +R Sbjct: 315 AIAVAQELGCTPEEIAPALKDAKV-KGRIEMVKVSDEF-TLMIDYAHNAMALKSLLTTLR 372 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437 R+I VFGCGG+R + +R MG+++ +D I+T DNPR E+PE I +I G+ Sbjct: 373 DYHPNRLISVFGCGGNRSKLRRFEMGEVSGKYSDFTIITSDNPRYEEPEDIMNDIETGMK 432 Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +I+ +R EAIR AI+ + D++V+AGKGHE + + M II+EIL Sbjct: 433 KTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGKGHEDYQEIKGVKYPMDERV-IIQEIL 491 >gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 476 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 140/481 (29%), Positives = 222/481 (46%), Gaps = 41/481 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +++I +SSDSR I+ +IF+A G + DGH +I AI GA I+ Y+ D + Sbjct: 20 DKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNGANTII----YTNDDIN--F 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 S + V + R L+ ++ L Y ++ VTGT+GK++ A+ + + + G Sbjct: 74 ESGINYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTTANLIAFVLNKLGSPC 133 Query: 145 FQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 IG + + + TTP L + L + + + +E SSHGL R GI Sbjct: 134 ANIGTDGADLINKTMPTEHTTPEITDLNEILIKAKKENIKNAVMETSSHGLYLKRNYGID 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRA 260 G FTNL +H+D+H+T YF AKM LL ++ DD Y +KE+ K A Sbjct: 194 YEYGVFTNLSMEHMDFHKTMDNYFKAKMI----LLNNSKKQVVNLDDDYGKRAKEIFKDA 249 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVA 318 +S+ K+ N ++V + +E F L G++ +YN+L A Sbjct: 250 -----LTISINEDSKY-------RAKNIKRVDLGLEFTVNGVKFHLNRFGQYDIYNSLCA 297 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G + + LE V RFEF+ N G I VD+AHT + E + K++ Sbjct: 298 IAIANDLGYKLEEISKALEDFTGVKSRFEFI-ENKLGINIVVDFAHTPEAFENLFKDLP- 355 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 +I V+G GDR R +GKI+ +++T D+P+ + E I +I G+ Sbjct: 356 -KDKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVITTDDPKFDTFENISQQIKEGVDE 414 Query: 439 FIEKG------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 KG +R EAI+ I K D + + GKG E K + + IRE+ Sbjct: 415 --NKGECIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEKFLKFNGNIKTYYSERETIREV 472 Query: 493 L 493 L Sbjct: 473 L 473 >gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 516 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 134/481 (27%), Positives = 218/481 (45%), Gaps = 37/481 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +FVA+ G G F A ++GA A++ + + + P ++V Sbjct: 46 DNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDP----EGMAFLTDLDIPAIIV 101 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSG-LSSFQIGPTST 152 + A+ + + + + A T + ++ + R G LSS + Sbjct: 102 PDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLVGTVEAA 161 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + +TTP L + + V H+ VE SSH L R+D + FTNL Sbjct: 162 VGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFACVGFTNL 221 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---VLS 269 +DH+DYH T + YF K LF + + +I D + + + ++ +G LS Sbjct: 222 SQDHLDYHGTMEQYFQTKASLFSQ--QRSDRQVIIVDGVWGQRLAEQLERSGQHDFVTLS 279 Query: 270 V-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LVAA 319 + +QGK I L + + +GK+ +PG F NA +V Sbjct: 280 LTGRPADWQGKIIELDGGFT----ELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVVT 335 Query: 320 GLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 GL + +L HL + VPGR E + R + VD+AH +S +++L + Sbjct: 336 GLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPR---VIVDFAHNPDSTKVLLDTM 392 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 R T GR+++V G G RD GKRPI+G+IA +LAD VTD + E+P IR +++ G+ Sbjct: 393 RISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAGM 452 Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 G F+E R AI AI +D +V+ G+GHE++ G+ + D + RE Sbjct: 453 KGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDLD-DRVVAREA 511 Query: 493 L 493 L Sbjct: 512 L 512 >gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM 9946] Length = 474 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 140/463 (30%), Positives = 216/463 (46%), Gaps = 51/463 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVG----NKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + ++ DSR +Q G+IFVAI G N+ +GH FIP+AIA+GA IV QD Sbjct: 17 VTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIV-----GTQDLE 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P L V + R L+ A+ +G HP +L + G +G + L Sbjct: 72 LPV----PYLKVADPRSALADLAAAFWG-HPAKMLQLVGITGTKGKTTVTVLAHH---LL 123 Query: 144 SFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 F P IS+ + TTP + + L+ G +E SSH L Sbjct: 124 QFAAPPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVLEVSSHAL 183 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 R+ G++ G +TNL DH+D+H + + YF AK + LL + ++ +D Y Sbjct: 184 ALERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAK----QTLLRRSRFGVLNREDPYYP 239 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ H S G G + L+ +H + + + F P+ G+F Sbjct: 240 QLPGLTH------WSYGMGGDWQAENLLETAGGLHFRVRSPLGA----FKVSLPMIGKFN 289 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A +G+ + LE VPGR + V R+ VD+AHT +S+ Sbjct: 290 ALNALAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQATPF--RVIVDFAHTESSVRA 347 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--- 428 L+ +R T GR+++V G G+R +R +G+ A +LAD+A+ T+++ RSE+ E I Sbjct: 348 ALETLRPTTRGRLVIVVGAAGERGAERRTGIGRAAGELADLAVFTEEDHRSENLEAILQT 407 Query: 429 RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 AE + G + +R EAIR AI D L++AGKGHE Sbjct: 408 MAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKGHE 450 >gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase [Borrelia hermsii DAH] Length = 514 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 148/475 (31%), Positives = 224/475 (47%), Gaps = 52/475 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR + + ++F A+ G DG FI AI QG+ IV ++ D Sbjct: 34 EVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQGSNVIVHTNDIDSYD----- 88 Query: 87 RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 N + +D N ++F+S F+ Y + + I+ VTGT GKSSV ++ + + G+ Sbjct: 89 -PNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGV 147 Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++G ST+ F +D R +TP + LS + V + VE++SHG Sbjct: 148 ---KVGFISTV--FFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHG 202 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD RL I TN+ +H+++H T Q Y NAK+ LF I+ DD Sbjct: 203 LDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANGGFGIVNMDDN 262 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKD--FDFLFPLP 307 + NA RV + + K + + N+Q I E KD +D L Sbjct: 263 NFSVFL----NAINRVYTYSLENK--NADFFVSKINEQMGFIEFEFYHKDVKYDARVNLT 316 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAH 364 G F V N V A L + + + + E +EKL V G R + V I +DYAH Sbjct: 317 GSFNVEN--VMAALIVVSQVMNIHISELIEKLVNVEGLCGRMQGVDFGQDFSLI-IDYAH 373 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 T + I + + R+I VFG G+RD KR + G+IA +DI I+ D++PRSED Sbjct: 374 TPGAFLKIFPMFKRLAKNRLISVFGSAGERDTFKRKLQGEIADRYSDIIILCDEDPRSED 433 Query: 425 PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +I +I GI G FI +R AI A+++ D++V GKGHE+ Sbjct: 434 SMQIIRDIAEGISGKTLNKDLFFIP--DRRSAIEKAVDIAYAGDLVVTLGKGHES 486 >gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bacillus megaterium QM B1551] Length = 499 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 124/424 (29%), Positives = 208/424 (49%), Gaps = 31/424 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + IN ++ S+ + G +F +I G EDGH +I +AI +GA A+ +S L+ S T Sbjct: 22 QTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSIEELRLLS-TQY 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 S+ L VD+ RK ++ F+ + E I + VTGT+GK++VA++V+ + L + Sbjct: 81 SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140 Query: 146 QIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T SS + + TTP + L K L ++G +E SS +DQ R++ Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVED 200 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I TNL +H++YH+T + Y KM+LF++ A+I DD + + R Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDDQDMGKDLSR-- 254 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312 L G + + L A + +T+ G FD L+ P+ G++ + Sbjct: 255 ------LFEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYGDYNI 308 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEM 371 N L A G + ++ L +L GRF+ V G N++ ++ +DYAHT +L Sbjct: 309 ANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQ--KVILDYAHTPVALTR 366 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +++ ++ + ++IV+ G RD K P M ++ AD IVT D+P DP I + Sbjct: 367 LVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVIVDQ 426 Query: 432 IIHG 435 ++ G Sbjct: 427 VMTG 430 >gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis str. Sterne] gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 401 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 184/383 (48%), Gaps = 27/383 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 250 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 251 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 308 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 309 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 367 Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398 IR G+II VFGCGGDRD K Sbjct: 368 IREFAKGKIITVFGCGGDRDAKK 390 >gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter upsaliensis JV21] gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter upsaliensis JV21] Length = 428 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 199/403 (49%), Gaps = 54/403 (13%) Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ I+ V+ T+K L + I+ +TGT+GK++ A+ + I G F Sbjct: 37 VKKGAKIIDVEETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLG---F 86 Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSS---QGVTHVSVEASSHGLDQHR 198 + G T +F D ++ T SPI K L YL +G +E SSH L Q+R Sbjct: 87 KCGLCGTRGAFINDEKIDEKSLTTSPIL--KTLEYLQKATLKGCEFFVMEVSSHALVQNR 144 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G++ A FTNL +DH+D+H + + Y AK F + ES I D + +K Sbjct: 145 IEGLEFAAKIFTNLTQDHLDFHGSFENYKKAKESFFTD----ESLKFINKDAFHINFNVK 200 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A+ + G + + K A+ N+ + + + F L G F +YN L+A Sbjct: 201 NAY-------TYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYN-LLA 252 Query: 319 AGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIY----VDYAHTSNSLEMIL 373 A C+ + LV +L L + G F G R +I VD+AHT + +E +L Sbjct: 253 ASACV-----NELVKPNLADLERAISG---FGGVCGRVEKIVEGVIVDFAHTPDGIEKVL 304 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +++ + +IVVFG GGDRD+ KR +MGK+ A AI+T DNPRSED I EI+ Sbjct: 305 DSLK---NKNLIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEIL 361 Query: 434 HGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P IE NR AI A+E+ + D++++ GKG ET Sbjct: 362 QGFEDKNTPLMIE--NRELAIYKALELKKEDDLVIILGKGDET 402 >gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Borrelia garinii PBi] Length = 508 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 139/476 (29%), Positives = 223/476 (46%), Gaps = 42/476 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G + DGH FI AI +G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRD---MDFYSP--- 80 Query: 89 NTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VD N RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGV-- 138 Query: 145 FQIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-- 195 ++G ST+ S R +TP + LS + V + +E++SHGLD Sbjct: 139 -KVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAILESTSHGLDLK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-- 253 RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 198 TARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYYSD 257 Query: 254 -KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 K +K++ + + FI K + + +G + L G F V Sbjct: 258 FKNAVKKSFTYSLKSSKADFFVSFIDEKI-----DSTRFEFYHKGVKYFANVSLLGSFNV 312 Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAFSK 371 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + + + R+I VFG G+RD KR + G+IA +D+ ++ D++PR E+ I + Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIVLCDEDPRGENSMYIIKD 431 Query: 432 IIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 I GI FI +R AI AI + D++V GKGHE I N E Sbjct: 432 IAKGIVNKVVNQDLFFIP--DRRLAIEKAISLARAGDLVVALGKGHENSIIYKNKE 485 >gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia garinii PBr] Length = 508 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 225/478 (47%), Gaps = 46/478 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V+ S+ + ++F A+ G DGH FI AI +G+ IV S DF + Sbjct: 27 EISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRD---MDFYSP--- 80 Query: 89 NTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144 N + VDN RKF+S F++ Y + + ++ VTGT GKSSV ++ + ++ G+ Sbjct: 81 NVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLKKKGI-- 138 Query: 145 FQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 ++G ST+ F D R +TP + LS + V + +E++SHGLD Sbjct: 139 -KVGFISTV--FLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGLD 195 Query: 196 QH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + A FTN+G +H+++H T Q Y NAK+ LF + +I DD Y Sbjct: 196 LETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPYY 255 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 K +K++ + + FI K + + +G + L G F Sbjct: 256 ADFKNAVKKSFTYSLKSNKADFFVSFIDEKI-----DSTRFEFYHKGVKYSANVSLLGSF 310 Query: 311 QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V N + A L I D +++ L + + GR + V + + +DYAHT + Sbjct: 311 NVENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSVNL-GQNFSVIIDYAHTPGAF 369 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 + + + R+I VFG G+RD KR + G+IA +D+ I+ D++PR E+ I Sbjct: 370 SKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIILCDEDPRGENGMCII 429 Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 +I GI FI +R AI AI + D++VV GKGHE+ I N E Sbjct: 430 KDIAKGIVNKVINQDLFFIP--DRKLAIEKAISLARAGDLVVVLGKGHESSIIYKNRE 485 >gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] Length = 391 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 184/383 (48%), Gaps = 27/383 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 12 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 66 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 67 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 121 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 122 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 181 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEV 256 FTNL +DH+DYH T Y + K LF L S A++ ADD S E Sbjct: 182 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDP-SVEY 240 Query: 257 MKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A V++ G + G + K + + +S + + L G F VYNA Sbjct: 241 FKKITSA--EVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYNA 298 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + GI + + L L + GR E + N + + VDYAHT ++LE +L Sbjct: 299 LAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHTPDALENVLST 357 Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398 IR G+II VFGCGGDRD K Sbjct: 358 IREFAKGKIITVFGCGGDRDAKK 380 >gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf. saccharolyticum K10] Length = 487 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 132/451 (29%), Positives = 207/451 (45%), Gaps = 26/451 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V DSR +FV + G D H FIP + G + +VV S I + Sbjct: 24 DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVVEREVS------EIPEDVT 77 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIG 148 ++ V+N R L+L ++ +G +P + G +G + ++ I + G IG Sbjct: 78 VIRVENGRNALALLSAARFG-YPAGKMVTIGVTGTKGKTTTTYMIKSILEACGKKVGLIG 136 Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + +A N TTP L + + G ++ +E SS HR+DG+ Sbjct: 137 TNGAVIGDKHYATKN--TTPESYLLEQYFDEMVKAGCEYMVMEVSSQSYLMHRVDGLTFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI + A F + ++LL AI+ DD + +E+++ A A Sbjct: 195 YGLFLNISNDHIG--PGEHADFEEYLHYKKQLLKNCKTAIVNEDDEHFEEIIRGAQ-AKI 251 Query: 266 RVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ F ++ V V + + + +PG F NAL + LC Sbjct: 252 HTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNVPGRFNAANALASVALCS 311 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + + A V LE L + GR E V +S+ I VDYAH + S+E +LK +R R Sbjct: 312 FLDLPKAKVAHGLEHLKI-DGRMEIVYKSSKMTVI-VDYAHNAVSMESLLKTLRDYKPKR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439 ++ VFGCGG+R + +R MG+I +LAD I+T+DN R ED I +I G+ + Sbjct: 370 LVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRYEDVNDILTDIKVGLSMTSGTY 429 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IE +R AI AI + D++ + GKGHE Sbjct: 430 IEIPDRRRAIEFAISHAHDGDMIAIIGKGHE 460 >gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. SG-1] gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus sp. SG-1] Length = 413 Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 123/401 (30%), Positives = 207/401 (51%), Gaps = 26/401 (6%) Query: 92 ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQIC----QRSGLSS 144 ++VV +T K ++ ++ Y +P N++ VTGT+GK++V + + I QRS LS Sbjct: 3 LVVVKDTFKAMAQLVNKYY-DYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALSG 61 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG F +N TT + + + + + ++ +E SSHGL RL G+ Sbjct: 62 -TIGFDLDGELFPSEN--TTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLWGVDF 118 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDA-YSKEVMKRA 260 +FTNL DH+DYHQT + Y AK LF +L L A++ +DD Y + A Sbjct: 119 DVVTFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTA 178 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318 H V+S G + + K + T +++ + F+ L G+F VYN L A Sbjct: 179 H----EVISYGLE-TYADFKAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAA 233 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A G+ ++ ++ L V GR E V +++ +Y+DYAHT +++E ++++ Sbjct: 234 MATLFAKGMSVEKLVTIIKDLPPVSGRMEKVHSDAPLS-MYIDYAHTPDAIENAIQSVLP 292 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436 +II + G GG+RD+ KRP M + A +AD ++T D+PR E + I ++ G+ Sbjct: 293 FKENKIIFLVGTGGNRDKSKRPSMAEKA-SIADYVVLTTDDPRYESYDSIVNDLGKGMRH 351 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + G+R EA++ A+++ D+++ AGKGHE I+ N Sbjct: 352 GNYALIGDREEAVKHAVDVSEPGDIIIFAGKGHEDYQIIEN 392 >gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter upsaliensis RM3195] gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter upsaliensis RM3195] Length = 428 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 199/403 (49%), Gaps = 54/403 (13%) Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ I+ V+ T+K L + I+ +TGT+GK++ A+ + I G F Sbjct: 37 VKKGAKIIDVEETKKLLGI-------DKTIKIIGITGTNGKTTTAAAIYSILLDLG---F 86 Query: 146 QIGPTSTISSFAQDNRLT----TPSPIYLAKALSYLSS---QGVTHVSVEASSHGLDQHR 198 + G T +F D ++ T SPI K L YL +G +E SSH L Q+R Sbjct: 87 KCGLCGTRGAFINDEKIDEKSLTTSPIL--KTLEYLQKATLKGCEFFVMEVSSHALVQNR 144 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++G++ A FTNL +DH+D+H + + Y AK F + ES I D + +K Sbjct: 145 IEGLEFAAKIFTNLTQDHLDFHGSFENYKEAKESFFTD----ESLKFINKDAFHINFNVK 200 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A+ + G + + K A+ N+ + + + F L G F +YN L+A Sbjct: 201 NAY-------TYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYN-LLA 252 Query: 319 AGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIY----VDYAHTSNSLEMIL 373 A C+ + LV +L L + G F G R +I VD+AHT + +E +L Sbjct: 253 ASACV-----NELVKPNLADLERAISG---FGGVCGRVEKIVEGVIVDFAHTPDGIEKVL 304 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +++ + +IVVFG GGDRD+ KR +MGK+ A AI+T DNPRSED I EI+ Sbjct: 305 DSLK---NKNLIVVFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEIL 361 Query: 434 HGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P IE NR AI A+E+ + D++++ GKG ET Sbjct: 362 QGFEDKNTPLMIE--NRELAIYKALELKKEDDLVIILGKGDET 402 >gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sanguibacter keddieii DSM 10542] gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sanguibacter keddieii DSM 10542] Length = 535 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 171/329 (51%), Gaps = 24/329 (7%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 +RLTTP L L+ + GV +++E SSH + Q R+DG+ FTNL +DH+D+ Sbjct: 178 SRLTTPDAATLQGVLATMREDGVDVLAMEVSSHSISQRRIDGLHFDVAGFTNLSQDHLDF 237 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H YF AK LF + ++ DD + + + A + LSV + G Sbjct: 238 HGDLDRYFAAKAELFTAERARR--GVVVVDDEWGRRLAATA-DIPTVTLSVEHSGGPQSD 294 Query: 280 KKVCAIH-NKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 V +H T SV +G+ LPG F V NA +A + + GI+ V Sbjct: 295 WTVRDVHAGASGSTFSVVHRDGRSVRARTALPGSFNVANAALAIVMVVESGIEVGTVTAA 354 Query: 336 LEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 LE VPGR E V S R+ VD+AH ++L + L +R T+GR++VVFG Sbjct: 355 LEAAGGLSPAVPGRMEQV---SDSPRVVVDFAHNPDALALALAALRPTTAGRLVVVFGAT 411 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG----FIE 441 G+RD KRP+MG+IA++ AD+ +VTDD+P E + IRAE++ G PG +E Sbjct: 412 GERDTTKRPVMGRIAVEGADVVVVTDDDPHGEAADGIRAEVLAGAREAAAQPGCDVDVLE 471 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 R AIR A+ + +D ++VAG+GHE Sbjct: 472 AAPRALAIRAAVLAADDEDTVLVAGRGHE 500 >gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424] Length = 504 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 132/469 (28%), Positives = 226/469 (48%), Gaps = 29/469 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATI 86 K+N +S DSR I G +FVAI G DGH +I + IAQGA ++ S Y++QD + + Sbjct: 28 KVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQGAALVIASRYEDYNVQDCAVVV 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I K S+ A ++ + + +AVTGT+GK+S+++ V + + G SS Sbjct: 88 VKEHEI------EKIASMLAKKINSGNKVHTVAVTGTNGKTSISTLVHNMLRELGESSSY 141 Query: 147 IGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG + F +++ TTP + L + L + + +++ EASSH + R+ Sbjct: 142 IGT----NGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEASSHAMVLGRIY 197 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVM 257 + + FTNL +H+D+H Q Y K LF L S A ++ DD Y + Sbjct: 198 NVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVLNKDDEYYSIMS 257 Query: 258 KRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314 K ++ + F K + + + + T +++ +++ G+F V N Sbjct: 258 KCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEYECQTNYIGDFMVSN 317 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A G ++ L L + GR E +G + I D+AHT + + +L+ Sbjct: 318 VLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILGED-LPIDIISDFAHTPDGYKKLLE 376 Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 R I + R +++ G GG RD K P++G+I + AD ++T D+PR ED E + I Sbjct: 377 ATREIRKNKRTLLLTGMGGGRDISKGPLIGEI-ISEADYVVITTDSPRDEDVEVLMGTIE 435 Query: 434 HGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 G+ + + R +A++ I++ DV+++A KG E I+ G+K Sbjct: 436 KGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVILASKGREDYEILRGGKK 484 >gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174] Length = 491 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/459 (28%), Positives = 229/459 (49%), Gaps = 33/459 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++++ V DSR ++ +F+ I G DGH F+P I +GA+ +VV + Sbjct: 20 EQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKGAKTLVVEEEVEAPE----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 + ++ V +TR ++ ++ +G HP L G +G + V+ I + +G Sbjct: 75 --DVTVIKVADTRYAMAFISAAYFG-HPAEKLKTIGITGTKGKTTTTYMVKSILENAG-- 129 Query: 144 SFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +++G TI + + + TTP + + + G V +E SS GL HR Sbjct: 130 -YKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVMEVSSQGLMLHRT 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G G FTN+ DHI ++ + F+ +R LL + I+ DD + + +++ Sbjct: 189 QGFVFDYGIFTNIEPDHIGPNEHKD--FDDYLRCKSMLLQQCRVGIVNRDDEHFERIIE- 245 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNA 315 H C++ + G+ + + + + K + IS + K +F +PG+F +YN+ Sbjct: 246 GHT--CQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPVEIDIPGKFSIYNS 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A +C + +++ L K+ V GR E + + + +DYAH + +LE +L Sbjct: 304 LTAIAICRHFNVSQENIIKAL-KVARVKGRIEVIKVSDEF-TLMIDYAHNAMALESLLTT 361 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R R++ +FGCGG+R + +R MG+++ LAD+ I+T DNPR E+P+ I +I G Sbjct: 362 LREYHPHRLVCLFGCGGNRAKSRRYEMGEVSGRLADLTIITSDNPRFEEPQDIIDDIKIG 421 Query: 436 IP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I ++E +R EAI AI D++V+AGKGHE Sbjct: 422 ISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKGHE 460 >gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces pristinaespiralis ATCC 25486] Length = 431 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 31/392 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR- 87 +I ++ DSR ++ G ++ A+ G + G F QA GA A+ L D S R Sbjct: 48 EITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAAV-------LTDESGAERA 100 Query: 88 --SNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGL 142 + P+LV +N R + A+ +YG HP + L +TGTSGK++ A V+ + +G Sbjct: 101 AATGLPVLVTENPRGRMGELATEIYG-HPGDDLLQIGITGTSGKTTTAYLVEGGLKAAGR 159 Query: 143 SSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 S+ IG T+ D R+ TTP L + + +G V++E SSH L R Sbjct: 160 STGLIG---TVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAMEVSSHALVLGR 216 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +DG F NL +H+++H + YF AK +LF +E A++ DD Y + ++ Sbjct: 217 VDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTPRRSRE--AVVNFDDEYGRRLVD 274 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A + G+ + V H + G+ PLPG F V N L Sbjct: 275 EATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPLPGPFNVANTLA 334 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILK 374 A G+D + + + VPGR E V G+ Y VDYAH ++++E +L+ Sbjct: 335 AVVTLAVAGLDPQTAADGIAAVPGVPGRLERVDA----GQPYLAVVDYAHKTDAVESVLR 390 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 ++R +T G++ +V GCGGDRD+ KR MG A Sbjct: 391 SLRKVTKGKVHIVLGCGGDRDRTKRGPMGAAA 422 >gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM 16841] Length = 493 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 134/461 (29%), Positives = 215/461 (46%), Gaps = 34/461 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ ++ DSR I +FV +VG DGH +IP A+ + A IV+ ++ +A I Sbjct: 20 ETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKEASVIVLEK----EEEAAQI 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N +L V++ R L+L ++ L+ HP L G +G + I + ++ + Sbjct: 76 PENITVLKVESARLALALMSAALF-DHPARKLVTIGLTGTKGKTTTTYMIKKVLEMAGKK 134 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + + L TTP L + + + G +V +E SS GL R GI Sbjct: 135 VGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAMVEAGCEYVVMEVSSQGLKLDRTAGI 194 Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNL DHI H + + Y K LF + I+ ADD + ++K Sbjct: 195 LFDYGIFTNLSPDHIGPAEHASFEEYMECKSLLFRQC----RIGIVNADDEHVDGILK-G 249 Query: 261 HNAGCRVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 H + S + FI+ +H + + K +PG F VY Sbjct: 250 HTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVTGCMDCQAK-----VHIPGRFSVY 304 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N++V +C GI +LE L K+ V GR E + S+ + +DYAH S +L Sbjct: 305 NSMVTMLVCHLAGISDEAILEGLSKVQV-KGRVEMLPV-SKDYTLIIDYAHNEVSTRSVL 362 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + R+I V+G GG+R + +R MG++ ++AD+ ++T DNPR E+ I +I Sbjct: 363 TTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVLTCDNPRDEEIRDINNDIK 422 Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 G+ +IE +R EAI ++ D++V+ GKGHE Sbjct: 423 VGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKGHE 463 >gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus RM3267] gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus RM3267] Length = 430 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/390 (33%), Positives = 190/390 (48%), Gaps = 37/390 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ A+ + G + G T +F + R LTT + Sbjct: 61 IIGITGTNGKTTTAAAICATLLNLG---YGCGLCGTRGAFVNNERIDDKALTTSE---IL 114 Query: 172 KALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 + LSYL S +G + +E SSH + Q R++ + FTNL +DH+DYH T + Y Sbjct: 115 RTLSYLKAASERGCEYFVMEVSSHAIAQKRIESLDFAMKIFTNLTQDHLDYHGTFEEYAR 174 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K F + ++P +I DD + NA L+ ++ Sbjct: 175 VKSEFFAD----DAPKLINIDDRGG--IKFNPANA----LTYALHANADFAPGEYSLEGG 224 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346 + T+ + L GEF +YN L+AA C+A D L + K V GR Sbjct: 225 IRATLKTPRRQMALSSNLHGEFNLYN-LIAAASCVATLTDRPLEQIARAAAKFDGVEGRM 283 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V SR + VD+AHT + +E +L +R +I+ VFG GGDRD+ KRP MG IA Sbjct: 284 EVV---SREPLVIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTKRPKMGAIA 337 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463 A +VT DNPRSE+PE I AEI G+ NR EAI+ A+E L + ++LV Sbjct: 338 QKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIANRKEAIKYALESLTQDEILV 397 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + GKG ET + G K D +++RE+L Sbjct: 398 ILGKGDETYQEI-KGVKYPFSDKEVVRELL 426 >gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Clostridium sp. M62/1] Length = 487 Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 131/451 (29%), Positives = 206/451 (45%), Gaps = 26/451 (5%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V DSR +FV + G D H FIP + G + +VV S I + Sbjct: 24 DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKILVVEREVS------EIPEDVT 77 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIG 148 ++ V+N R L+L ++ +G +P + G +G + ++ I + G IG Sbjct: 78 VIRVENGRNALALLSAARFG-YPAGKMVTIGVTGTKGKTTTTYMIKSILEACGKKVGLIG 136 Query: 149 PTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + +A N TTP L + + G ++ +E SS HR+DG+ Sbjct: 137 TNGAVIGDKHYATKN--TTPESYLLEQYFDEMVKAGCEYMVMEVSSQSYLMHRVDGLTFD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G F N+ DHI + A F + ++LL AI+ DD + +E+++ A A Sbjct: 195 YGLFLNISNDHIG--PGEHADFEEYLHYKKQLLKNCKTAIVNEDDEHFEEIIRGAQ-AKI 251 Query: 266 RVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ F ++ V V + + + +PG F NAL + LC Sbjct: 252 HTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKVNVPGRFNAANALASVALCS 311 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + + V LE L + GR E V +S+ I VDYAH + S+E +LK +R R Sbjct: 312 FLDLPKPKVAHGLEHLKI-DGRMEIVYKSSKMTVI-VDYAHNAVSMESLLKTLRDYKPKR 369 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GF 439 ++ VFGCGG+R + +R MG+I +LAD I+T+DN R ED I +I G+ + Sbjct: 370 LVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDNSRYEDVNDILTDIKVGLSMTSGTY 429 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 IE +R AI AI + D++ + GKGHE Sbjct: 430 IEIPDRRRAIEFAISHAHDGDMIAIIGKGHE 460 >gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC 39149] gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC 39149] Length = 331 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 157/314 (50%), Gaps = 34/314 (10%) Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ +GVT + +E SSH L R+ G++ G +TN G DH+D+H YF AK +L Sbjct: 2 LAAARERGVTALVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQL 61 Query: 234 FE-----ELLPKESPAI----IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 F+ E+L + PA+ A +YS A V GY +F Sbjct: 62 FDGRCAVEVLNHDDPALRPLFTPATVSYSAAGDPTATWYATDVDGEGYAQRFT------- 114 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 H +T+ LPG V NAL+A + G+D+ + VPG Sbjct: 115 AHGPGGLTVPAG-------VALPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPG 167 Query: 345 RFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402 R E V S G R VDYAH ++++ L +R +++GR+I V G GGDRD+GKRP M Sbjct: 168 RLELV---SAAGPVRGVVDYAHKTDAIVAALAALRELSAGRLICVIGAGGDRDRGKRPEM 224 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPG-FIEKGNRIEAIRTAIEML 456 G A AD+ +VTDDNPR+E+P IRAE++ G P +E G R AI A+ + Sbjct: 225 GAAAARGADVVLVTDDNPRTEEPAAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRLA 284 Query: 457 NKQDVLVVAGKGHE 470 DV+ V GKGHE Sbjct: 285 APGDVIAVLGKGHE 298 >gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus sativus] Length = 871 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 133/506 (26%), Positives = 244/506 (48%), Gaps = 45/506 (8%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ + +I + DSR + AG +FV G + + +A +GA Sbjct: 345 ELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCDGGDDS---VLSEADKRGAV 401 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V S ++D + R+ +++V++T L+ AS Y +HP +AV G +G + Sbjct: 402 AVVASKEIDIED-TLGCRA---LVIVEDTEAVLAALASSFY-RHPSKDMAVIGVTGTNGK 456 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRL----TTPSPIYLAKALSYLSSQGVTH 184 + I + G S++S + DN++ T+P + + ++ + G Sbjct: 457 TTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNGTEA 516 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESP 243 + +EAS L + D + FTNL R+ + T + Y +A+ +LF ++ P+ Sbjct: 517 LVMEASPQELASGKCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPERHR 576 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFD 301 ++ DD + +++ N V++ + +H K + QV ++ + Sbjct: 577 KVVNIDDPNAAFFVQQG-NPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQGILE 635 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G +YN L A + IA+G ++ +E++ VPGR E + G + VD Sbjct: 636 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFG-VIVD 694 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +A+T + L +L ++R + RII V GC G+ ++GKRP+M KIA + +D+ ++T DNP Sbjct: 695 HANTPDGLSRLLDSVRELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTSDNPG 754 Query: 422 SEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNKQ 459 +EDP I +++ GI +++ G+R+ A+R A+ M + Sbjct: 755 NEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGEEG 814 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485 D++VVAGKGHE + G+KK D Sbjct: 815 DMVVVAGKGHEAYQL--EGDKKEFYD 838 >gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus obscurus DSM 43160] Length = 508 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 128/450 (28%), Positives = 209/450 (46%), Gaps = 32/450 (7%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR + G +F + G DGH +P A A GA A++V + ++ P L Sbjct: 39 TDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDR---------PVETSLPQLC 89 Query: 95 VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151 V + R L + L G ++ VTG++GK++ ++ V+ + + +G + +G + Sbjct: 90 VPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSALVRGVLEAAGTCTGVVGTLGA 149 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++ +++ LTTP L + L + G VEASS LD R+DG+ FT Sbjct: 150 QVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMDGLAFEVAVFTG 209 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 DH+D+H T + Y+ +K RLFE + + ++ DD + + + A A RV VG Sbjct: 210 FEEDHLDHHGTVEQYWASKARLFEP--GRTAAGVVVTDDPWGRRL---ADQAAVRVTRVG 264 Query: 272 YQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + + A +V + + PL G V N A +G+ Sbjct: 265 SGADADVRVLGWRTGAA---GTEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWATGRVLGV 321 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385 + L + GR +G + R + VDYAHT +L + +R +T GR+ Sbjct: 322 PPDRIAAGLAAVAPPRGRNTVLGGSGR-PVVVVDYAHTPRALAAAVDTVRDLTGPGGRVH 380 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEK 442 +V G G RD+ KR +G+ A AD +T++ EDP IRAE+ + G P + Sbjct: 381 LVVGARGRRDRYKRQGLGESA-RAADCVWLTNEGSHGEDPAAIRAELRLGLLGTPAAVRT 439 Query: 443 -GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +R EAI A+ DV++V G+GHET Sbjct: 440 VPDRREAITAAVRAAGPADVVLVVGRGHET 469 >gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Mobiluncus mulieris FB024-16] Length = 516 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 134/466 (28%), Positives = 223/466 (47%), Gaps = 48/466 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R ++ G +F+A+ G G F P AI++GA+A++ +A P++ V Sbjct: 46 DNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVLTDAA----GLDLVANPEVPVITV 101 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTS- 151 + A+ +G +P N L + G +G + + ++ + R G + +G Sbjct: 102 PDVPHAAGRAAAMAWG-NPANHLRLWGVTGTNGKTTTTYLLRHLLHRVGKLAALVGTVEV 160 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I + + +TTP + + + + + +E SSH L R+D ++ F N Sbjct: 161 AIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHALGLGRVDPLRFRVAGFCN 220 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 L DH+D+H + + YF K LF E + +I DD + + + ++ G Sbjct: 221 LTHDHLDFHHSMEDYFQTKASLFTER--RSDRQVIIVDDDWGRRLAEQLERMG------- 271 Query: 272 YQGKFIHLKKVCAIHNKQQVTIS-------------VEGKDFDFLFPLPGEFQVYNALVA 318 Q F+ L Q +I+ +GK +PG F N +A Sbjct: 272 -QHDFVTLS-TTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPGRFNAVNTALA 329 Query: 319 -----AGLCIAIGIDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 GL ++ + + +L HL + VPGR E + R + VD+AH +L+ Sbjct: 330 IVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR---VIVDFAHNPGALK 386 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ +R T+GR+ +VFG G RD KRPI+G+IA +LAD +TDD+P EDP+KIRA Sbjct: 387 SLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYLTDDDPHEEDPDKIRA 446 Query: 431 EIIHGI---PG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 E+ G+ PG ++E R AI+ AI+ QD +V+AG+GHET+ Sbjct: 447 EVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAGRGHETL 492 >gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM 6068] Length = 505 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 123/444 (27%), Positives = 205/444 (46%), Gaps = 38/444 (8%) Query: 54 EDGHLFIPQA-------------IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100 E G LFIP+A I +GA AI+ L P +V + R+ Sbjct: 44 EPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQLLPLA---------IPQAIVPDARE 94 Query: 101 FLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 L + + + G + + +TG+ GK++ A V + + + + I S Q Sbjct: 95 ALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGYSDSIEQ 154 Query: 159 -DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 + TP LA +S + +E SS GL Q R G L TNL H Sbjct: 155 VSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTAGTSLDIAVLTNLRNVHT 214 Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF- 276 H + Y AK R+F L P AII ADD S+++++ + C L+VG + Sbjct: 215 SEHGSAANYLAAKKRIFSHLKPG-GLAIINADDHRSRQLLE---SLACPTLTVGLHAEAD 270 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 I + + +Q+ TI+ + + G+ V N L A + +++GI+ + ++ + Sbjct: 271 ISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELSTIVRGI 330 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + +PGR + + G + VD A T ++L + LK R +T GR+++VF G++++ Sbjct: 331 ENVTYLPGRMQRLEVGQEFG-VIVDAASTPDTLAIALKTARRVTKGRVLLVFSASGEKNR 389 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG---FIEKGNRIEAIRT 451 RP++ ++A AD+A++T NPR E P +I +++ G P FI R EAIR Sbjct: 390 DARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIP--TRAEAIRW 447 Query: 452 AIEMLNKQDVLVVAGKGHETVHIV 475 A+ D +++ G G T H+V Sbjct: 448 ALGHAQPGDCVLICGHGDRTSHLV 471 >gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Tropheryma whipplei TW08/27] gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei TW08/27] Length = 509 Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 141/496 (28%), Positives = 232/496 (46%), Gaps = 42/496 (8%) Query: 1 MKLQDLIYKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M LQ Y+ +LI Q L+ Q+ +R ++ ++ ++ ++ IFVA G G Sbjct: 1 MTLQGKPYR-LSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHG 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F+ Q + A + +Q RS TPILV D+ R L + A R+Y Sbjct: 60 VEFLDQVQSCAAVLTDNKGRHIMQSDCLPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIR 118 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174 I +TGT+GK+S ++ + G+S G ++TI S A D+ LTTP L + Sbjct: 119 IFGITGTNGKTSTMHIAAKLLEMMGISC---GISTTIGSSASESDSCLTTPELCQLYARI 175 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++EASSH +++ RL I L +FTNL +H++ H+ +AY+ AK LF Sbjct: 176 FTAKQARADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF 235 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L + + A+I D Y + K GC + K+ K+ Q ++ Sbjct: 236 --LNKRSNSAVINIDTPYGIRLFK---ETGCSASVISENTKYGLDHKLF-----WQASVR 285 Query: 295 VEGKDFDFLFPLPGEFQVYNAL------VAAGLCIAI------GIDSALVLEHLEKL--- 339 G F F P ++V +++ A C+AI GID + L K Sbjct: 286 RVGLSFGFTLISPSGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGL 345 Query: 340 -HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V+PGR E T + R+ VD+ HT +++E L ++IT GR+I + G RD K Sbjct: 346 KMVLPGRMEVFQTGN-SPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSK 404 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIE 454 R +G++ +D +TD + R E+P +IR I+ G+ G ++ +I +A+ AI+ Sbjct: 405 RKHLGQLCGAYSDKLFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAID 464 Query: 455 MLNKQDVLVVAGKGHE 470 + D ++ +G G + Sbjct: 465 IAKSDDTVLCSGFGDD 480 >gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 481 Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 154/512 (30%), Positives = 238/512 (46%), Gaps = 62/512 (12%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A + +L Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNYNEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290 LL K S A++ D V+K V +Q F + I N + Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKE---------QVEHQEHDFYGSQSSNQIDNSKA 276 Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPG 344 + S GK D+D L G F NA+ A C+ +G LE+++K VPG Sbjct: 277 FSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LENIKKGIAATRVPG 330 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G Sbjct: 331 RME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGL 389 Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DV 461 + +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N++ D Sbjct: 390 LLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDA 449 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKG + IV ++ D I L Sbjct: 450 VIIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481 >gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase Length = 509 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 141/496 (28%), Positives = 231/496 (46%), Gaps = 42/496 (8%) Query: 1 MKLQDLIYKDFPELINQ----LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56 M LQ Y+ +LI Q L+ Q+ +R ++ ++ ++ ++ IFVA G G Sbjct: 1 MTLQGKPYR-LSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHG 59 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F+ Q + A + +Q RS TPILV D+ R L + A R+Y Sbjct: 60 VEFLDQVQSCAAVLTDNKGRHIMQSDCLPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIR 118 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174 I +TGT+GK+S ++ + G+S G ++TI S A D+ LTTP L + Sbjct: 119 IFGITGTNGKTSTMHIAAKLLEMMGISC---GISTTIGSSASESDSCLTTPELCQLYARI 175 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++EASSH +++ RL I L +FTNL +H++ H+ +AY+ AK LF Sbjct: 176 FTAKQARADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF 235 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 L + + A+I D Y + K GC + K+ K+ Q ++ Sbjct: 236 --LNKRSNSAVINIDTPYGIRLFK---ETGCSASVISENTKYGLDHKLF-----WQASVR 285 Query: 295 VEGKDFDFLFPLPGEFQVYNAL------VAAGLCIAI------GIDSALVLEHLEKL--- 339 G F F P ++V +++ A C+AI GID + L K Sbjct: 286 RVGLSFGFTLISPSGYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGL 345 Query: 340 -HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V+PGR E T + R+ VD+ HT +++E L ++IT GR+I + G RD K Sbjct: 346 KMVLPGRMEVFQTGN-SPRVIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSK 404 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIE 454 R +G++ +D +TD + R E+P +IR I+ G+ G + +I +A+ AI+ Sbjct: 405 RKHLGQLCGAYSDKLFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAID 464 Query: 455 MLNKQDVLVVAGKGHE 470 + D ++ +G G + Sbjct: 465 IARSDDTVLCSGFGDD 480 >gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC 25986] gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC 25986] Length = 505 Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 142/507 (28%), Positives = 227/507 (44%), Gaps = 67/507 (13%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P +++I + DSR ++ G +FV + ++ AIA GA A V Y + Sbjct: 28 PSASCDQRIEFATDDSRQVRPGTLFVC--KGRAFKREYLLSAIADGAVAYVSEVDYDV-- 83 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQI-- 136 + P ++V + R+ L++ A YG HP + A TGT GKS+ + +++ I Sbjct: 84 -------DLPAVIVSDIRRTLAVVADAFYG-HPSGKVKVCAFTGTKGKSTCSFYLRGILA 135 Query: 137 -------CQRSGLSS-------FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 C R L++ + GP+ +LTTP L +++ + G Sbjct: 136 NEAKLTGCHRPALNTGIEFDDGIEAGPS----------KLTTPESFLLQSRIAHAAEAGA 185 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240 + +EASS GL R I G+FTN+G DHI H T + YF +K+++F + Sbjct: 186 PWLVMEASSQGLKYERTGKIAFEVGAFTNIGEDHISPIEHPTLEDYFASKLKIFSQ---- 241 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 A++ D V++ A R ++ + + + + V +V F Sbjct: 242 SRFAVVNLDMDKVDRVLEAASRCE-RTVTFSLTDERADVFALAIRNGDCGVVATVRTPRF 300 Query: 301 --DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 D + P P +F V NAL A +GI ++ E + VPGR E + S G+I Sbjct: 301 TRDIVIPTPVKFNVSNALAAIACAEVLGISEEGIVHGFEGVF-VPGRMELYPSVS--GKI 357 Query: 359 Y--VDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 VD+AH SLE +L+++R R + VVFG G + +R MG A AD ++ Sbjct: 358 LGIVDFAHNGMSLETLLRDLRENYPERELAVVFGATGGKGVDRRTTMGIAAGKYADRIVI 417 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGK 467 T+D+P ED E I AEI + +GN R+ AI A+ + V++V GK Sbjct: 418 TEDDPGPEDVEDICAEIARNVQA---QGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTGK 474 Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494 G E + NG + D I++ L Sbjct: 475 GEEERMLRKNGPEPCERDGSILKRTLA 501 >gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1] Length = 485 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 223/465 (47%), Gaps = 44/465 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E K+ + SDSR++ IF + G DGH +I A+ QGA+ IV S + + Sbjct: 6 EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYK----- 60 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGL 142 + V+N L+ A Y HP ++ VTG+SGK+ VA ++++ L Sbjct: 61 -HRGVLYIKVNNVLDELNRVADVFY-DHPSYKMTMIGVTGSSGKTVVALMIKEVLSHY-L 117 Query: 143 SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG + + + TTP I++ + L+ + + V V++E SSHGL R+DG Sbjct: 118 KMGYIGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDG 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + FTN+ +H+D+H T + +K +LF L+ ++ AI+ D+ ++K + Sbjct: 178 VHFDIAIFTNVYEEHLDFHGTMEHLMASKAKLF-TLIDEKGYAILNTDEVRFYNLVKDS- 235 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQV 312 C +L+ G + H V A + + + ++ +FD P+ G F + Sbjct: 236 -IRCHLLTYGIE----HKAHVMA----RNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNI 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L +A+ + VLE + + V GR E + + + VDY + S E + Sbjct: 287 SNVLAVITSMLALEMPMDQVLESVGYIRGVDGRMELL-EHPYPFTVIVDYCQHAKSFEKV 345 Query: 373 LKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + +++ T+GRII VFG G ++ KR +GK+A + I+T ++ R ED I + Sbjct: 346 FQFAKSVQTNGRIIAVFGAPGKKNYNKREKIGKLANQYCNQVILTAEDNRDEDIHDICLD 405 Query: 432 IIHGIPGFIEK------GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I ++EK +R AI AIE+ N D++++ GKGHE Sbjct: 406 ----IQEYLEKPVSVIIEDRRIAIEQAIEIANHGDIILILGKGHE 446 >gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545] Length = 614 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 217/470 (46%), Gaps = 32/470 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ ++ DSR + G +FV + G DGH F A+A GA A+V + Sbjct: 114 EVSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAAGAVAVVCEGEIE------GLTD 167 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQ 146 P +VV + K L A+ YG + + V T + +Q I + +S Sbjct: 168 EIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVSCGV 227 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G T+ D + TTP + + L+ + G ++E SSH L+ R+D Sbjct: 228 VG---TVGYEIGDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRVDEC 284 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 FTNL RDH+D+H + + Y AK +LF +L D + A Sbjct: 285 DFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIEAAG 344 Query: 263 AGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G RV + Y + F+ K+ +TI +F+ + + G+ V Sbjct: 345 GGDRVPIITYATQPSKEGQADVFVSDVKLALFETT--LTIQTPVGEFEAVCGVVGKINVT 402 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N A + +A+ I ++ +E++ VPGR E + + + VDYAHT ++L+ + Sbjct: 403 NIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELI-DEGQPFSVIVDYAHTPDALKRAI 461 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 ++R +I VFGCGGDRD KR MG+IA +DI VT+DNPR+EDP KI + + Sbjct: 462 TSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDIVFVTNDNPRTEDPYKILDDTM 521 Query: 434 HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 + + +R AIR AI M + D +++ GKGHE +IV G K Sbjct: 522 Q-LQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHED-YIVVGGNK 569 >gi|218458611|ref|ZP_03498702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli Kim 5] Length = 167 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/140 (56%), Positives = 97/140 (69%) Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + LEKL GR E VG G YVDYAH ++LE +L ++R T+GR++VVFGC Sbjct: 1 VAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLSSVRPFTTGRVVVVFGC 60 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450 GGDRD+GKRPIMG+IA LAD+ IVTDDNPRSE+P IRAEI+ P E +R AIR Sbjct: 61 GGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCAAEIADRAIAIR 120 Query: 451 TAIEMLNKQDVLVVAGKGHE 470 A+ ML D L+VAGKGHE Sbjct: 121 EAVAMLTSGDTLIVAGKGHE 140 >gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353] Length = 486 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 155/493 (31%), Positives = 236/493 (47%), Gaps = 60/493 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+ V +DSR I+ G +F+ I G DGH F +A +GA +VV + D I+ Sbjct: 22 KVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAAEAAEKGAAVLVVEDEVEVPDSVTVIK- 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 VDNTR ++L ++ +G E + +AVTGT GK++ V+ + + +G + Sbjct: 81 ------VDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTTTTYMVKSLLEEAG---HK 131 Query: 147 IGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + TTP + ++ + V +EASS G R GI Sbjct: 132 VGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVMEASSQGFKLDRTAGI 191 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G FTNL DHI + H+ Y + K +LF + + A I DD + E+ K Sbjct: 192 MFDYGLFTNLSPDHIGPNEHKDFAEYLSCKAKLFNQC--RYGYANI--DDEHFAEITK-- 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFL---FPL---------- 306 NA C + + G N V VE +D DFL F L Sbjct: 246 -NATCPIETFGLN------------ENADLVAYDVELTRDRDFLGVDFGLKGTCEGKISC 292 Query: 307 --PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PG F V+NAL A + +G+ + + L V GR + V T I +DYAH Sbjct: 293 GVPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFSV-KGRVQIVPTGYDYTLI-IDYAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + +LE IL +R R+I +FGCGG+R + +R MG+++ LAD I+T DNPR E+ Sbjct: 351 NAVALESILNTLRAYDPPRLISLFGCGGNRSKLRRYEMGEVSGKLADFTIITSDNPRFEE 410 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 P+ I +I+ G+ +I +R EAI A+ D++V+AGKGHET + + Sbjct: 411 PQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKGHETYQEIEGKKY 470 Query: 481 KMSVDCDIIREIL 493 MS + +I++++L Sbjct: 471 HMSEE-EIVQDVL 482 >gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei str. Twist] gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Tropheryma whipplei str. Twist] Length = 531 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/469 (28%), Positives = 220/469 (46%), Gaps = 37/469 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ +R ++ ++ ++ ++ IFVA G G F+ Q + A + +Q Sbjct: 49 QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQVQSCAAVLTDNKGRHIMQSDC 108 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 RS TPILV D+ R L + A R+Y I +TGT+GK+S ++ + G+S Sbjct: 109 LPTRS-TPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGTNGKTSTMHIAAKLLEMMGIS 167 Query: 144 SFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G ++TI S A D+ LTTP L + ++EASSH +++ RL Sbjct: 168 C---GISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADFFALEASSHAINRGRLGD 224 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I L +FTNL +H++ H+ +AY+ AK LF L + + A+I D Y + K Sbjct: 225 IVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALF--LNKRSNSAVINIDTPYGIRLFK--- 279 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL----- 316 GC + K+ K+ Q ++ G F F P ++V +++ Sbjct: 280 ETGCSASVISENTKYGLDHKLF-----WQASVRRVGLSFGFTLISPSGYRVESSISLLGK 334 Query: 317 -VAAGLCIAI------GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHT 365 A C+AI GID + L K V+PGR E T + R+ VD+ HT Sbjct: 335 AFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGN-SPRVIVDHGHT 393 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +++E L ++IT GR+I + G RD KR +G++ +D +TD + R E+P Sbjct: 394 VDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDKLFITDGHSRFENP 453 Query: 426 EKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHE 470 +IR I+ G+ G + +I +A+ AI++ D ++ +G G + Sbjct: 454 AEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFGDD 502 >gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis XB6B4] Length = 516 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 224/477 (46%), Gaps = 46/477 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85 I ++ S ++ G +FV I G DGH +I A+ GA A+VV + + + F T Sbjct: 23 ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82 Query: 86 ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131 +R+ ++ V +TR+ L+ ++ Y +P L + G +G A Sbjct: 83 EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141 Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I + +G + +G T + + TTP L + L+ + S G +E S Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G+ R++GI G F N+ DHI H + Y K RL + I+ Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257 Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300 DD +++++ H SV G G +K + +++T S+ EG+ + Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314 Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FL +PG F V NAL A + I +V + L++ VPGR E V + + Sbjct: 315 GKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDKF-V 372 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH SL +L +R GR++V+FGCGG+R + +R MG+ A LAD I+T Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRGRMGETAGRLADFTILTS 432 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPR EDPE I +I GI G +I +R A+ A + + D++V+AGKGHE Sbjct: 433 DNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAREGDIIVLAGKGHE 489 >gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Ruminococcaceae bacterium D16] Length = 665 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 216/474 (45%), Gaps = 54/474 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDF 82 R +++ ++ DSR + G +F+ ++ H F+ A QGA A V ++ Sbjct: 31 RNQRVTGLTCDSRQVAPGTLFI-----RKGAHFQTKFLEMARDQGAMACVSQEEDTV--- 82 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQR 139 P + + +TRK L+ A R Y HP ++ +TGT GKSS A +++ I R Sbjct: 83 -----PGLPRIAITDTRKALAPLADRFY-DHPSGKLKVIGITGTKGKSSTAYYMKSILDR 136 Query: 140 SGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 S + G T +SS ++ LTTP P+ L + + + G+ +V++E SS Sbjct: 137 YQESQGR-GETGVVSSIDTYDGVERFESHLTTPEPLDLQRHFANAAQTGLEYVTMEVSSQ 195 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 L HR + A F N+G DHI H + YF +K+++F + + + D Sbjct: 196 ALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKLKIFAQ----AHISCVNLDC 251 Query: 251 AYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +++ V++ A AG +++ Y ++ V + T+ +PG Sbjct: 252 DHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQILFTLRTPRYTRQMRLTMPG 311 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTS 366 F V NAL AA LC A+ I V + L + VPGR E GR+ VDYAH Sbjct: 312 LFNVENALGAAALCEALDIPEWAVYDGLVRAR-VPGRMEVYANAD--GRVLSIVDYAHNR 368 Query: 367 NSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 S E + ++R R + +VFGC G + +R +G+ A D +T+++ ED Sbjct: 369 LSFETLFSSVRAEYPERELAIVFGCPGKKAYDRRHDLGEAAGAWCDRVYLTEEDSGEEDT 428 Query: 426 EKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHET 471 I EI +EKG NR EAIR A+ K VL++ GKG ET Sbjct: 429 LDICQEIRPN----VEKGKARCRIIPNRGEAIRQAVLESEKPTVLLLTGKGRET 478 >gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix DSM 17093] gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix DSM 17093] Length = 504 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 220/469 (46%), Gaps = 42/469 (8%) Query: 27 ERKINEVSSDSRHIQAG------WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 E ++ + D+R + +IFVA G DGH F VV A + Sbjct: 24 EVEVRRIVQDTRELTPSDPATEPFIFVARRGAAVDGHRFA-ARAVAQGAVAVVGEATPEE 82 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQIC 137 S R P + V + R L+ A+ LYG HP L VTGT GK++ A+ + + Sbjct: 83 QASFAWRHAAPYIQVPDDRAALAQLAATLYG-HPSRALFTVGVTGTDGKTTTATLLHHLL 141 Query: 138 Q---RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q +GL S T+ + + L TTP + + L+ ++G+ +E+S Sbjct: 142 QGDRPTGLLS-----TAGVRLGEAEGGLFGHFTTPEAPEVQRTLAAFVARGLRAAVIESS 196 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 SHG Q RLD I G TNL +H+D+H T + Y AK +L+ + +I+ ADD Sbjct: 197 SHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTFENYRAAKA----QLMARARTSILNADD 252 Query: 251 AYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 RA R+++ G + +V + + ++ G+ + P+ G Sbjct: 253 PNYAYFAARAR----RIITYGVVRAATWRATEVRELPGALEWRLTHAGRSYPARLPMVGS 308 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + VYNAL A G+ A L L VPGR + V T + VD+AHT +L Sbjct: 309 YNVYNALAALAAACEAGVPLAGALARLATFPGVPGRMQVVQTAPFA--LVVDFAHTPPAL 366 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 E L +R G++IVV G G+RD GKR +G A AD+A+ T+++ RSEDPE I Sbjct: 367 EKALAALRPQVRGKLIVVVGAAGERDPGKRAPLGAAAARGADLAVFTEEDARSEDPEAIL 426 Query: 430 AEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 A++ G G F + +R AIR A+ + D++++AGKGHE Sbjct: 427 AQLRAGAQGAGGRLGETFWLEPDRRAAIRRAVTLAEAGDLVLLAGKGHE 475 >gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 491 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 223/464 (48%), Gaps = 39/464 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V+ ++ + G +FVA+ G + DGH FI QA +GA A++ + + Sbjct: 20 EADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLG------EGLPTGV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P L V + R L+ A+ L+G HP ++ VTGT GK++ + + + + +GL Sbjct: 74 QTTLPYLQVPDARAALADLAAELHG-HPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAGLP 132 Query: 144 SFQIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G ST D +L TTP L L L G +EASSH L Sbjct: 133 T---GLLSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALAL 189 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKE 255 HR+ G+ A +T+L R+H+D+H + + YF K RL E +P A++ ADD ++++ Sbjct: 190 HRVRGVAWDAAIWTHLTREHLDFHGSVEGYFADKRRLIE-----AAPFAVLNADDPWTEQ 244 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVY 313 + + ++ +G + + + ++ V +F LP G F V Sbjct: 245 L----RGVAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVA 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +G + + L VPGR + V G R+ VD+AHT SLE Sbjct: 301 NALAAMAAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTPPSLEKA 360 Query: 373 LKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L+ +R+ T G++ VV G GG+RD KR +G++A AD AI T+++ R + I A Sbjct: 361 LQTLRSTTGGQLWVVIGSAGGNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAA 420 Query: 432 IIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + G F +R EAIR A+ D +++AGKG E Sbjct: 421 MERGAREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKGPE 464 >gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis M50/1] Length = 516 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 224/477 (46%), Gaps = 46/477 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85 I ++ S ++ G +FV I G DGH +I A+ GA A+VV + + + F T Sbjct: 23 ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82 Query: 86 ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131 +R+ ++ V +TR+ L+ ++ Y +P L + G +G A Sbjct: 83 EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141 Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I + +G + +G T + + TTP L + L+ + S G +E S Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G+ R++GI G F N+ DHI H + Y K RL + I+ Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257 Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300 DD +++++ H SV G G +K + +++T S+ EG+ + Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314 Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FL +PG F V NAL A + I +V + L++ VPGR E V + + Sbjct: 315 GKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDKF-V 372 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 VDYAH SL +L +R GR++V+FGCGG+R + +R MG+ A LAD I+T Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGNRSKLRRGRMGETAGRLADFTILTS 432 Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 DNPR EDPE I +I GI G +I +R A+ A + + D++V+AGKGHE Sbjct: 433 DNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAREGDIIVLAGKGHE 489 >gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 381 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 183/374 (48%), Gaps = 31/374 (8%) Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKALSYLS 178 T+G ++V + + G + +G T+ + DN + TT S I++ LS + Sbjct: 1 TNGTTTVTQLINLLSNLLGQKTATMG---TLGNGFHDNLYPTKNTTSSSIFIHSFLSQVY 57 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +++E SSHGL Q+R+ I FTNL +DH+DYHQ + Y AK LF + Sbjct: 58 KKKAKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK-- 115 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVT 292 + I+ A+D Y K+ +K+ N +++ Y K+++ + +N + Sbjct: 116 HQVQKIILNANDKYGKKWLKKLFNYYTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNIH 175 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + L G+F V N L++ + +G + ++ K+ + GR + N Sbjct: 176 FESSWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIFTKN 235 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 ++ I +DYAHT ++L+ L IR I +FGCGG++D+ KR IMG IA +++ Sbjct: 236 NKPIFI-IDYAHTPDALQKTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSIAEKMSNQ 294 Query: 413 AIVTDDNPRSEDPEKIRAEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 I+T+DNPR+E + I +I+ G IP NR +AI A ++V Sbjct: 295 VIITNDNPRNEKEQNIIQDILSGCQKKNQIFVIP------NRKKAISYAYFKARYNHIIV 348 Query: 464 VAGKGHETVHIVTN 477 +AGKGHE I+ N Sbjct: 349 IAGKGHEEKQIIRN 362 >gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sanguinis ATCC 49296] Length = 481 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 150/511 (29%), Positives = 235/511 (45%), Gaps = 60/511 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR ++ G +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSDVFFDNISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL K S A++ D V+K + F + I N + Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277 Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345 + S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390 Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N++ D + Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + IV ++ D I L Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481 >gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Deinococcus radiodurans R1] Length = 490 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 213/458 (46%), Gaps = 32/458 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ ++ +Q G FVAI G K DGH F+ QA A GA A++ Q S Sbjct: 24 EVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQAAGAVAVLGEGLADGQT------S 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P L V N R L+ A+ L G HP ++ VTGT GK++ + + + + +GL++ Sbjct: 78 PLPYLTVPNARAALADAAAALAG-HPSRELKVVGVTGTDGKTTTSWLTRHLLRSAGLAT- 135 Query: 146 QIGPTSTISSFAQDNRL-------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G ST+ D L TTP + L + + G +EASSH L R Sbjct: 136 --GLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQATVLEASSHALSLDR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G+ +T+L +H+D+H T YF K +L E + A++ DD ++ ++ Sbjct: 194 VRGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLVE----RARFAVLNVDDPWTAQL-- 247 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R G S Q + + H+ + DF P+ G F V NAL Sbjct: 248 RGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVVSPAGDFQAELPMIGRFNVANALAG 307 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +G + + L VPGR E V + R+ VD+AHT SLE L +R Sbjct: 308 MAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVDFAHTPPSLEKALGTLRA 367 Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 T+G + VV G GG RD KR +G++A LAD AI+T+++ R + I E+ G Sbjct: 368 TTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHAILTEEDCRDTPLQDILNEMERGAR 427 Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 F+ G+R EAIR A+ D +++AGKG E Sbjct: 428 EEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAGKGPE 465 >gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 437 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 176/345 (51%), Gaps = 30/345 (8%) Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 +D LTTP + K L +G + +E SSH + Q+R+DG+ TN+ +DH+ Sbjct: 109 EDKSLTTPPILQTIKNLKMAVDEGCEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHL 168 Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 D+H+T Y K R FE+ ES +I +D+ H R+ + Y + Sbjct: 169 DFHKTIDEYIAVKSRFFED----ESLKLINSDER---------HIRFNRINAFTYGIEHP 215 Query: 278 HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALV 332 KV A K+ ++ ++ K+ +DF L G F +YN A+ A L G++ + Sbjct: 216 ATYKVLAYSLKEGISAAIAKKEKVYDFESSLHGFFNLYNLLAAISAVDLLHVAGMEE--I 273 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E + V GR + V S+ + VD+AHT + +E +L++++ IVVFG GG Sbjct: 274 CEAVSHFGGVEGRMQVV---SQDPLVIVDFAHTPDGMEKVLESMK---DKNCIVVFGAGG 327 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAI 449 DRD+ KRP MG +A A IVT DNPRSE+P+ I EI+ GI K +R +AI Sbjct: 328 DRDRTKRPKMGAVAERYAKWMIVTSDNPRSENPDAIIEEIVAGIQRTESLHVKVDRYQAI 387 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A+ M K DV+++ GKG ET V G K D +++ EIL Sbjct: 388 EEALGMQKKSDVVLILGKGDETYQEVA-GVKYPFDDRNVVLEILA 431 >gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter fetus subsp. fetus 82-40] gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Campylobacter fetus subsp. fetus 82-40] Length = 429 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 128/401 (31%), Positives = 199/401 (49%), Gaps = 54/401 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 ++ +TGT+GK++ A F RS +++G + T +F D ++ T S I + Sbjct: 62 LIGITGTNGKTTTA-FAIAFGLRS--LGYKVGISGTRGAFICDKQIADKGLTTSQIL--E 116 Query: 173 ALSYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 LSY+ G + +E SSH + Q+R++G+ FTNL +DH+DYH++ Y Sbjct: 117 TLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNFALKVFTNLSQDHLDYHKSFSEYARV 176 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMK-------RAHNAGCRVLSVGYQGKFIHLKKV 282 K F++ +SP +I DD K K + +A V + ++G Sbjct: 177 KSSFFDD----DSPKLINGDDESIKFNHKNTMIYWLKNSDASFFVENYDFKGGI------ 226 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEK 338 + I + + + L G+F +YN L A G +I S + L+ + K Sbjct: 227 -------KANIKSKNETANLQSHLQGKFNLYNLLAAIG---SIKFLSRVSLQEAADSVRK 276 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 V GR E V S+ + VD+AHT + +E +L ++ ++VVFG GGDRD+ K Sbjct: 277 FESVAGRVEIV---SKNPLVIVDFAHTPDGIEKVLD---ALSHDELVVVFGAGGDRDKTK 330 Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEM 455 RPIMGKI A I+IVT DNPR+EDP I +I+ G+ NR +AI+ AIE+ Sbjct: 331 RPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIENRKDAIKKAIEL 390 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 + V VV GKG E ++ G+K D +++EIL I Sbjct: 391 AAGKTV-VVLGKGDEPYQEIS-GKKYPFSDKLVVQEILSAI 429 >gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 9 TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGD 68 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278 Y AK +LF KE II ADD + + + +A + ++G+++ Sbjct: 69 MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126 Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 K + ++ Q VT+ + + + L G F V N L+A +A+ ++ + Sbjct: 127 TKNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G+ Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283 >gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter curvus 525.92] gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter curvus 525.92] Length = 432 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 124/392 (31%), Positives = 187/392 (47%), Gaps = 35/392 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ A+ + + + G + + T +F + R LTT + + Sbjct: 61 IVGITGTNGKTTTAAAIYETLRELG---HKCALSGTRGAFIEGERIDEKALTTSAILQTL 117 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L S +G + +E SSH +DQ R++ +K FTNL +DH+DYH++ Q Y K Sbjct: 118 GYLKAASQRGCKYFIMEVSSHAIDQKRIESLKFALKIFTNLTQDHLDYHKSMQEYARVKS 177 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 FE+ +S +I DD K K A+ S+ F + + Sbjct: 178 SFFED----DSLKLINIDDGGIKFNPKNAY-----TYSLKKPASFAPV--AYGLKGGIDA 226 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350 I D PL GEF +YN + A G + +++ + + + K V GR E V Sbjct: 227 VIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPENSKLSKAISKFSGVDGRVEVVS 286 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VD+AHT + +E +L +R + +IV+FG GGDRD KRP MG IA A Sbjct: 287 SEPL---VIVDFAHTPDGIEKVLNALRHLN---LIVIFGAGGDRDNTKRPKMGAIAQRYA 340 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------LNKQDVLV 463 I IVT DNPRSE+PE I EI G+ E +RI + AIE+ L LV Sbjct: 341 QICIVTSDNPRSEEPEAIIDEICAGMR-MDESVSRISDRKKAIELGLGRLKELGAGWALV 399 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 + GKG E + G K D +++ + L L Sbjct: 400 ILGKGDEEYQEI-KGVKHPFSDKEVVLKALAL 430 >gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 284 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 9 TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGD 68 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278 Y AK +LF KE II ADD + + + +A + ++G+++ Sbjct: 69 MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126 Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 K + ++ Q VT+ + + + L G F V N L+A +A+ ++ + Sbjct: 127 TKNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G+ Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283 >gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus australis ATCC 700641] Length = 481 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 51/481 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 N++S DSR + A +F N KE F+ QAI QG + V QDF +I Sbjct: 35 FNQISYDSRKVNAETLFFVKGANFKKE----FLEQAIEQGLQWYVAE-----QDFEVSI- 84 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144 P ++V + ++ +SL A YG HPE +LA TGT GK++ A + +I ++ + Sbjct: 85 ---PAIIVTDIKQAMSLIAMEFYG-HPERQLKLLAFTGTKGKTTSAYYAYKILEQGHRPA 140 Query: 145 FQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +T+ +F + + LTTP I L + ++ + TH+ +E SS R+ G+ Sbjct: 141 MLSTMNTTLDGKTFFK-STLTTPESIDLFEMMAQAVANDRTHLIMEVSSQAYLVKRVYGL 199 Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEV 256 G F N+ DHI H T + YF K L E ++ +D D ++EV Sbjct: 200 IFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NSRAVVVNSDMDHFDILAEEV 255 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNA 315 ++ H+ F + + N + + SV GK D+ L G F NA Sbjct: 256 AEQDHD-------------FYGSQSGNQVQNSKAFSFSVTGKLAGDYQTQLIGRFNQENA 302 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A C+ +G + + + K V PGR E V T G ++++DYAH +SL+ +L Sbjct: 303 VAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLSV 360 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH 434 + T +G I +V G G++ + +R G + D +I + +T D+P EDP I EI Sbjct: 361 VETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEISS 420 Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +EK +R +AI+ A+ +K +D +++AGKG + IV +++ D I Sbjct: 421 FITRPVEKIADREQAIQQAMATTSKPEDTVIIAGKGADCYQIVNGVKEEYPGDAAIAERY 480 Query: 493 L 493 L Sbjct: 481 L 481 >gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Wolinella succinogenes DSM 1740] gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE [Wolinella succinogenes] Length = 434 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 119/390 (30%), Positives = 194/390 (49%), Gaps = 32/390 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 ++ VTGT+GK++ ++ + I G +++ T F D LTTP + L Sbjct: 63 LIGVTGTNGKTTTSAAIYSILLDLG---YKVALLGTRGFFMNDELIEPKGLTTPPLLELY 119 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + + G +E SSH +DQ R++G+ TN+ DH+DYH++ + Y K Sbjct: 120 ERIDRAKRAGCDFFVMEVSSHAIDQKRIEGLNFALKILTNITSDHLDYHKSLEHYIQTKN 179 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F++ PK +I D++ +K ++ A LS G + + K ++H + Sbjct: 180 SFFDDSTPK----LINKDESKAKFNLQNA-------LSYGIEHPSSYHVKAYSLHGGIEA 228 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 I+ K+ L G+ +YN L A + + IG + + + E+ V GR E V Sbjct: 229 RIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLIGGELQEICDMAERFGGVEGRMERV- 287 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 S + VD+AHT + + I + + I+V+FG GGDRD+ KRP MG +A A Sbjct: 288 --SEEPLVVVDFAHTEDGMRQIFE---SFPHQEIVVLFGAGGDRDRSKRPKMGAVADRYA 342 Query: 411 DIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 +T DNPRSEDP I EI IH +++ +R++AIR A++ L Q+VL++ GK Sbjct: 343 KRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKEPDRVQAIRRAVKELEAQEVLLILGK 402 Query: 468 GHETVHIVTNGEKKMSV-DCDIIREILGLI 496 G E I+ G +K+ + D + + LG I Sbjct: 403 GDEAEQII--GSQKIPMKDRETVLSALGEI 430 >gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Treponema denticola ATCC 35405] Length = 532 Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 141/489 (28%), Positives = 217/489 (44%), Gaps = 55/489 (11%) Query: 23 MQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 +++ RK+ S D + ++ G F A+ G DG FI AI GA I D Sbjct: 30 VEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG-----D 84 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 + + V++ RK +S ++ LY + ++ VTGT GKSS SF+ Q+ Sbjct: 85 LNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSSTVSFIFQLLNL 144 Query: 140 SGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + G ST+ N + TTP + L+ + G ++ VEASSHG Sbjct: 145 CGKKA---GFFSTVEYSIDGNVIPNPEHQTTPESNVVQLRLAQMRDSGCSYAVVEASSHG 201 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------------L 238 L RL+ + AG F N+ ++H+++H T + Y K LF L + Sbjct: 202 LSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYDKANLFRALDKNPGKGFPIFGIV 261 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 E P+ Y +A K V + Y+G F + + K + K Sbjct: 262 NYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLFAKDIEESSSGIKFTLCDFSSRK 321 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 ++ L G F V N L + I G+D A ++E L + V GR + + Sbjct: 322 EYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDFE 380 Query: 358 IYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +DYAHT +S I +I+ + G++I +FG GG+RD KRP G+IA +DI I Sbjct: 381 VLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIVI 440 Query: 415 VTDDNPRSED------------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 + D++PR ED PEK R E + IP +R AI+ A + K D + Sbjct: 441 LADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP------DRPSAIKKAFSLAGKNDAV 494 Query: 463 VVAGKGHET 471 ++ GKGHE Sbjct: 495 LLLGKGHEN 503 >gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus oralis ATCC 35037] gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis ATCC 35037] Length = 481 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 151/511 (29%), Positives = 234/511 (45%), Gaps = 60/511 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A + +L Sbjct: 9 DILKKDSLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL K S A++ D V+K + F + I N + Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277 Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345 + S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390 Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462 +I + +T D+P EDP I EI I +EK +R +AI+ A+ + N++ D + Sbjct: 391 LNQHPEIHVFLTADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + IV ++ D I L Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAIAERYL 481 >gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter hepaticus ATCC 51449] gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus ATCC 51449] Length = 463 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 208/467 (44%), Gaps = 79/467 (16%) Query: 47 VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILVVDNTRKFLSLF 105 V V NK++ + PQ IAQ + +Y L D A N+P Sbjct: 46 VLFVKNKQNKNFITPQ-IAQSCSMV---ESYELNDILMANFSHNSP-------------- 87 Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR---- 161 NI+ +TGT+GK++ A+ + I G F + T F ++R Sbjct: 88 ----------NIVGITGTNGKTTTAAIIYSILLDLG---FNVALLGTRGFFINEHRIKPK 134 Query: 162 -LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 LTTPS + L + L Q +E SSH ++Q R+ G+ TN+ DH+DYH Sbjct: 135 GLTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDYH 194 Query: 221 QTQQAYFNAKMRLFE----ELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGK 275 ++ + Y K FE +LL + P I D A Y + K+ + LSV Sbjct: 195 KSVEEYRRIKNSFFEGEGRKLLNADEPYIYCTDKAAYFYGIEKKGN------LSV----- 243 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDS 329 V A+ N IS +D+ L G+ +YN L A G + I Sbjct: 244 -----DVYALENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIG-AVKILTQE 297 Query: 330 AL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 L + E LE V GR E V + VD+AHT + + I ++ R +I VV Sbjct: 298 PLERIAEALEHFGGVSGRMEVVHNMPL---VIVDFAHTYDGMYQIFESFRHC---KIAVV 351 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443 FG GGDRD+ KRP MG A A +T DNPR+E P+ I +I+ G+ F+E Sbjct: 352 FGAGGDRDKSKRPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVE-A 410 Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +R +AI A+E L +VL++ GKG E I+ N EK D +++R Sbjct: 411 DRKKAIYMALESLESDEVLLILGKGDEDYQIIGN-EKIYFDDREVVR 456 >gi|46204010|ref|ZP_00050625.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum magnetotacticum MS-1] Length = 198 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/177 (56%), Positives = 116/177 (65%), Gaps = 4/177 (2%) Query: 304 FPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G FQV NALVAAGL + A D A V LE L VPGR E +G +RGG V Sbjct: 3 LPLVGGFQVENALVAAGLALATPAGAADPAGVFAALESLTGVPGRMERIG-EARGGLCLV 61 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAH +LE +L +R SGR++VVFGCGG+RD GKRPIMG IA LAD IVTDDNP Sbjct: 62 DYAHKPEALEHVLTALRPFASGRLVVVFGCGGNRDSGKRPIMGAIAARLADRVIVTDDNP 121 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 R+E+P IRA I+ PG E G+R +AIR + L DVLVVAGKGHET IV + Sbjct: 122 RNEEPASIRAAILAAAPGAEEIGDRAQAIREGVRSLKAGDVLVVAGKGHETGQIVGD 178 >gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter canadensis MIT 98-5491] Length = 434 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 119/380 (31%), Positives = 186/380 (48%), Gaps = 34/380 (8%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYLAK 172 + +TGT+GK++ A+ + I G +++G T F + LTTPS + + Sbjct: 65 IGITGTNGKTTTAAMIYSILLDMG---YKVGLLGTRGFFINGIQKRPKGLTTPSTLEIYT 121 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 A++ +G +E SSH + Q+R++G++ TN+ DH+DYH+T + Y K Sbjct: 122 AINEAKQEGCEFFVMEVSSHAITQNRIEGLEFALKILTNITSDHLDYHKTLENYIATKNS 181 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F K+ +I D+ ++ ++ G S + K LK Q+T Sbjct: 182 FFSNPNDKK---LINKDEKNAQYPLQNTLTYGIESTST-FSIKAYSLKGGITA----QIT 233 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVG 350 + D PL G+ +YNAL A G + + L + LE V GR + + Sbjct: 234 YGSQVATLDS--PLLGKHNLYNALAAIG-AVQMLTQKPLQEIANQLENFGGVMGRMQII- 289 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 ++ I VD+AHT + +E I ++ +I V+FG GGDRD+ KRP MG A A Sbjct: 290 --NQKPLIVVDFAHTEDGMEQIF---QSFLHQKIAVLFGAGGDRDKTKRPKMGFCASKYA 344 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465 +T DNPR+EDP+ I EI+ GIP I + NR AI+ AI L + +VL+V Sbjct: 345 QKIYITSDNPRNEDPKTIMQEILSGIPQSKRSRVILEENRALAIQKAIAELKEDEVLLVL 404 Query: 466 GKGHETVHIVTNGEKKMSVD 485 GKG ET I+ G++ + D Sbjct: 405 GKGDETYQII--GDRTLHFD 422 >gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Photobacterium profundum 3TCK] Length = 487 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 211/469 (44%), Gaps = 57/469 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S +Q +F+ G D H ++ QAI GA A++ + T+ + P++V Sbjct: 24 NSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIANR---------TLHLDIPVIVT 74 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPT 150 ++ + SL + HP N + VTGT+GK++VA + Q+ +S S++ +G Sbjct: 75 ES--HYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQMLNQSSTSAYIGTLGVQ 132 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 A N TTP + L + GV H +E SSH L Q R + L G T Sbjct: 133 YADVIMALSN--TTPDGVTLLNIFRDMVECGVKHNVMELSSHALAQDRAGFLDLEVGIIT 190 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+GRDH+DYH+T+ AY AK+++ + + P A+I DD ++ + R H RV +V Sbjct: 191 NIGRDHLDYHRTKDAYVQAKLQIIDRIKPG-GYAVINMDDPHAPAMFARCHG---RVKTV 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLF---------PLPGEFQVYNA 315 + IH K HN+ ++ E G F + +P F V N Sbjct: 247 SFS---IHYKDT---HNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMPFLFNVENM 300 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A A G + L + GR +F N+ G VDYAH + L + + Sbjct: 301 LAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQTLNN-GATGLVDYAHNLDGLARLFSD 359 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 I T + V G GDR Q I G++ +D+ + T DNP D +A+I Sbjct: 360 IPNQTFRHTLTVVGVTGDRIQDAAAI-GELCARYSDLVVFTMDNPLGID----QADIFRA 414 Query: 436 IPGFIEK--------GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 + IE +R EAI A +M K D++VV GKG ET +++ Sbjct: 415 LTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGSETSQLIS 463 >gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitratiruptor sp. SB155-2] gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Nitratiruptor sp. SB155-2] Length = 430 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 186/385 (48%), Gaps = 30/385 (7%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-----TTPSPIYLAK 172 + VTGT+GK++ A+ + GL + G T F +D +L TTP + Sbjct: 59 IGVTGTNGKTTTAAAIYSYLNDLGLKAALQG---TRGFFIEDEQLEKKSLTTPPILQTLY 115 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + QG T+ +E SSH + Q+R++ ++ FTN+ +DH+DYH+T Q Y K Sbjct: 116 HMYTAKQQGATYFVMEVSSHAIAQNRIEDLQFALKVFTNISQDHLDYHKTMQNYIATKSS 175 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F + E +I DD + + K G R SV + L ++ N Sbjct: 176 FFMD----EGSKLINKDDKHIQYNPK-----GARTYSVEELATYQIL--AFSMQNGISAV 224 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + DF P+ G F +YN A + + + + + E E V GR + + Sbjct: 225 LRFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTEHFAGVKGRMQILNE 284 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 I VD+AHT + ++ + + + +++ +FG GGDRD+ KR +MG +A Sbjct: 285 EPL---IIVDFAHTPDGMQKVFE---SFPGKKLVAIFGAGGDRDRSKRALMGNVASRFCT 338 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK-GNRIEAIRTAIEMLNKQDVLVVAGKG 468 +T DNPRSEDP++I +I GI F+EK +R EA+ A L K ++L++ GKG Sbjct: 339 KIYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVDRKEAVEKAFHSLQKDEILLILGKG 398 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 E +I NG K D +++ +I+ Sbjct: 399 DEE-YIEQNGTKIPYSDVEVVTDII 422 >gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C300] Length = 481 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 151/500 (30%), Positives = 236/500 (47%), Gaps = 63/500 (12%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ G +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI+QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVQNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQ 290 LL + S A++ D V+K V +Q F + I N + Sbjct: 230 ----RLLMENSRAVVINSDMDHFSVLKE---------QVEHQEHDFYGSQSSNQIENSKA 276 Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPG 344 + S GK D+D L G F NA+ A C+ +G LE ++K VPG Sbjct: 277 FSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPG 330 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G Sbjct: 331 RME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGL 389 Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DV 461 + +I + +T D+P EDP I EI I +EK +R +AI+ A+ + N++ D Sbjct: 390 LLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDA 449 Query: 462 LVVAGKGHETVHIVTNGEKK 481 +++AGKG + IV NG K+ Sbjct: 450 VIIAGKGADCYQIV-NGVKE 468 >gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Lactobacillus salivarius CECT 5713] Length = 510 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +F GN + +L A+ +GA A V Y+ + AT Sbjct: 32 VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V N +K ++L + YG P+N I+A TGT GK++ A F + I ++ + ++ Sbjct: 82 IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138 Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 STI D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G F N+ DHI + H T Y + K E+LL +I + AY ++V A Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299 G ++ + + YQ F L K V + +K Q T+ V+GK Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG++ NA A + G + L+++H+ PGR E + T + G IY Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH SL+ + ++ T +GR+I V G GD+ +RP GK + D I+T D Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P EDP KI E I +I N R AI AI+M D++V+AGKG + Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D ++ ++I+ Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507 >gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753] gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753] Length = 492 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 140/482 (29%), Positives = 230/482 (47%), Gaps = 40/482 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V DSR ++ G +FV ++G+ D H + QA+ GA A+V S L + Sbjct: 26 VNDVVYDSRRVRPGCVFVCLIGSAVDSHQYAAQAVEAGAAAVVASRQLEL--------AK 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSFQ 146 +++V++TRK ++ ++ L+G HP L G T GK++ A ++ I ++ G+ + Sbjct: 78 GTLVLVEDTRKAMAYMSAALFG-HPAAKLKTVGITGTKGKTTTACMIKTILEKGGIKTGV 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG I T Y + K L+ + +G +EASS GL HR DG+ Sbjct: 137 IGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMVEEGCQCAVMEASSLGLKWHRTDGLVFD 196 Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G FTN DHI + H + Y K LF+ ++ DD + ++K + Sbjct: 197 YGVFTNFSPDHIGENEHSCLEEYAACKGLLFQSC----KLGLVNIDDPACETILK---DH 249 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQVYNA 315 C + + G+ LK + G FD +PG+F YNA Sbjct: 250 TCELETFGFSNPQAQLK---GSNEGLIYRPGYLGAHFDVSGAMKLSVDVDIPGKFSAYNA 306 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + A +C + +L+ L ++ V GR E V + +DYAH + S+E IL Sbjct: 307 IAAIAVCRHFPVSEQNILDGLNEVK-VKGRVEPVKVPGN-YTLLIDYAHNAVSMENILTT 364 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 +R R++ +FG GG+R + +R MG+++ LAD+ ++T+DN R E+ I +I G Sbjct: 365 LREYQPHRLVCMFGAGGNRAKSRRYEMGEVSGRLADLTVITEDNSRFENVMDIIQDIQTG 424 Query: 436 IPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + K NR +AIR IE + D++V+AGKGHE + G K+ + +I+ + Sbjct: 425 MAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKGHEDYQEI-KGVKRHFDEREIVAD 483 Query: 492 IL 493 IL Sbjct: 484 IL 485 >gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis ATCC BAA-430] gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis ATCC BAA-430] Length = 446 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/373 (30%), Positives = 181/373 (48%), Gaps = 34/373 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-----AQDNRLTTPSPIYLA 171 I+A+TGT+GK++ A+ + I G +++ T F ++ LTTPS + + Sbjct: 73 IIAITGTNGKTTTAAMIYSILLDLG---YKVALLGTRGFFINGVKKREKGLTTPSLLEIY 129 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 A++ + T+ +E SSH + Q R++G++ TN+ DH+DYH+T + Y K Sbjct: 130 SAITEARKENCTYFVMEVSSHAIVQERIEGLEFTLKILTNITSDHLDYHKTLENYIATKN 189 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F L +I D+ ++ +++A ++ G + + ++ + Sbjct: 190 SFF---LSPLDLKLINKDEPNARYALQKA-------ITYGIESPATFQVRAYSLKDGITA 239 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFV 349 I+ ++ L G+ +YNAL A + + + L + E LE V GR + V Sbjct: 240 QIAYGKEESSLQCSLFGKHNLYNALAAIS-AVKLLENEPLQEICEKLENFGGVLGRMQVV 298 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 N I VD+AHT + +E I ++ +I VVFG GGDRD+ KRP MG A Sbjct: 299 SQNPL---IIVDFAHTEDGMEKIF---QSFPHRKIAVVFGAGGDRDKTKRPKMGLCAAKY 352 Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEMLNKQDVL 462 A +T DNPRSE P I EI +GIP + + NR +AI AI L +VL Sbjct: 353 AQKIYITSDNPRSEIPSAIIQEIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVL 412 Query: 463 VVAGKGHETVHIV 475 ++ GKG ET I+ Sbjct: 413 LILGKGDETYQII 425 >gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius UCC118] gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactobacillus salivarius UCC118] Length = 510 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 146/503 (29%), Positives = 235/503 (46%), Gaps = 69/503 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +F GN + +L A+ +GA A V Y+ + AT Sbjct: 32 VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V N +K ++L + YG P+N I+A TGT GK++ A F + I ++ + ++ Sbjct: 82 IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138 Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 STI D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G F N+ DHI + H T Y + K E+LL +I + AY ++V A Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299 G ++ + + YQ F L K V + +K Q T+ V+GK Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG++ NA A + G + L+++H+ PGR E + T + G IY Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH SL+ + ++ T +GR+I V G GD+ +RP GK + D I+T D Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN-RIE-------AIRTAIEMLNKQDVLVVAGKGHE 470 +P EDP KI E I +I N ++E AI AI+M D++V+AGKG + Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREIAIEKAIKMSTNNDIVVLAGKGED 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D ++ ++I+ Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507 >gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus salivarius ATCC 11741] Length = 510 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +F GN + +L A+ +GA A V Y+ + AT Sbjct: 32 VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V N +K ++L + YG P+N I+A TGT GK++ A F + I ++ + ++ Sbjct: 82 IIVTNVQKAMALLGAAFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138 Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 STI D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G F N+ DHI + H T Y + K E+LL +I + AY ++V A Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKCCVINGETAYLRDVYYTA 254 Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299 G ++ + + YQ F L K V + +K Q T+ V+GK Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG++ NA A + G + L+++H+ PGR E + T + G IY Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH SL+ + ++ T +GR+I V G GD+ +RP GK + D I+T D Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P EDP KI E I +I N R AI AI+M D++V+AGKG + Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D ++ ++I+ Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507 >gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 510 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 146/503 (29%), Positives = 233/503 (46%), Gaps = 69/503 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +F GN + +L A+ +GA A V Y+ + AT Sbjct: 32 VTYDSRKVSDNTLFFC-KGNFKPSYL--TSALEKGATAYVSEQKYA-EGMDATG------ 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V N +K ++L + YG P+N I+A TGT GK++ A F + I ++ + ++ Sbjct: 82 IIVTNVQKAMALLGAVFYG-FPQNELFIIAYTGTKGKTTSAYFAEHILAKA--TDKKVAL 138 Query: 150 TSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 STI D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 139 FSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRVYGL 198 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G F N+ DHI + H T Y + K E+LL +I + AY ++V A Sbjct: 199 TFDVGVFLNISPDHIGRNEHPTFDDYLHCK----EQLLVNSKRCVINGETAYLRDVYYTA 254 Query: 261 H------------NAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKD 299 G ++ + + YQ F L K V + +K Q T+ V+GK Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQ-TLHVDGK- 312 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG++ NA A + G + L+++H+ PGR E + T + G IY Sbjct: 313 --YELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRMEIIKTKNNG-TIY 368 Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH SL+ + ++ T +GR+I V G GD+ +RP GK + D I+T D Sbjct: 369 VDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKAVSEEVDHVILTTD 428 Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 +P EDP KI E I +I N R AI AI+M D++V+AGKG + Sbjct: 429 DPGFEDPMKIAQE----IDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKGED 484 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D ++ ++I+ Sbjct: 485 PYQKIKGVDVPYPSDVNVAKKIV 507 >gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M143] Length = 481 Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 145/506 (28%), Positives = 233/506 (46%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR ++AG +F A + +L Sbjct: 9 DILKKDSLFREIIDQGHYY-YNYSDVDFDSISYDSRKVKAGTLFFAKGATFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P++VV++ +K +SL A YG E ILA Sbjct: 66 AITQGLGWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 G +H+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 HNGRSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A++ D V+K + F + I N + + S Sbjct: 231 LLMENSRAVVINSDMDHFSVLKEQVE--------NQEHDFYGSQSSNQIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N++ D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + IV ++ D I L Sbjct: 456 GADCYQIVQGKKEDYPGDAAIAERYL 481 >gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] Length = 464 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 121/404 (29%), Positives = 192/404 (47%), Gaps = 46/404 (11%) Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPI 168 G++P I+ +TGT+GK++ A+ + + G +G S + LTTPS + Sbjct: 80 GENPR-IVGITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVL 138 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L + LS+ ++G + +E SSH + Q R+ G+ TN+ DH+DYH++ + Y Sbjct: 139 ELYENLSFAKAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRR 198 Query: 229 AKMRLFEELLPKESPAIIYADDAYSK-------------EVMKRAH-NAGCRVLSVGYQG 274 K FEE +I AD+ Y++ V K+ H + G L G Sbjct: 199 VKNSFFEE----RGLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDA 254 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVL 333 + NK+ S + + L G+ +YNAL A + I + Sbjct: 255 H------IAWRDNKECSQESCALQTY-----LYGKHNLYNALAGIAAVKILTNKPLCKIA 303 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + +E V GR E V + VD+AHT + ++ I ++ R +I VVFG GGD Sbjct: 304 QAMENFGGVSGRMEVVHHKPL---VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGD 357 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIE 447 RD+ KRP MG A + AD +T DNPRSEDP +I +I G+P + + +R + Sbjct: 358 RDKSKRPKMGACAFEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKK 417 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 AI A+ L + +VL++ GKG E I+ N + D +++RE Sbjct: 418 AIIQALNELQENEVLLILGKGDEDCQIIGNNKIYFD-DREVVRE 460 >gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter lari RM2100] gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter lari RM2100] Length = 427 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 126/397 (31%), Positives = 200/397 (50%), Gaps = 54/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLA- 171 I+ +TGT+GK++ A + I G +G T SF D +T T +PI Sbjct: 61 IIGITGTNGKTTTAGAIYSILLDLGYKCALMG---TRGSFINDKNITPKGLTTAPILQTL 117 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + LS S Q + +E SSH L Q+R++G++ A FTNL +DH+D+H + + Y AK Sbjct: 118 EILSLASEQKCEFLIMEVSSHALVQNRIEGLEFKAKIFTNLTQDHLDFHGSFENYKQAKE 177 Query: 232 RLFEE----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 F + + K++ AI + +K + + G S + H+K A+ N Sbjct: 178 SFFTDECMKFINKDASAIAFN--------VKNSFSYGIENPS------YYHIKAY-ALKN 222 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV------ 341 + ++ +F L G F +YN L+AA C+ + LV +L++L Sbjct: 223 GIEAVVNFGKNNFTIESSLVGLFNLYN-LLAASACV-----NELVRPNLKELEKAISNFG 276 Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 + GR + V + + VD+AHT + +E +L ++ +IVVFG GG+RD+ KRP Sbjct: 277 GIEGRMQVVAKD-----VIVDFAHTPDGIEKVLDALKY---KNLIVVFGAGGNRDKTKRP 328 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456 +M KIA A I+T DNPR E+P I +I+ GI F+E +R +AI+ A+E Sbjct: 329 LMAKIAKYYAKKLIITSDNPRFEEPMDIINDILSGIKKDENVFVE-CDRKKAIKKALEFK 387 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 N + +V+ GKG ET + G K D +++ EIL Sbjct: 388 NDDEFVVILGKGDETYQEIK-GVKYPFNDKEVVLEIL 423 >gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter cinaedi CCUG 18818] Length = 455 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 122/404 (30%), Positives = 193/404 (47%), Gaps = 46/404 (11%) Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPI 168 G++P I+ +TGT+GK++ A+ + + G +G S + LTTPS + Sbjct: 71 GENPR-IVGITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVL 129 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L + LS+ ++G + +E SSH + Q R+ G+ TN+ DH+DYH++ + Y Sbjct: 130 ELYENLSFAKAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRR 189 Query: 229 AKMRLFEELLPKESPAIIYADDAYSK-------------EVMKRAH-NAGCRVLSVGYQG 274 K FEE K +I AD+ Y++ V K+ H + G L G Sbjct: 190 VKNSFFEERGLK----LINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDA 245 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVL 333 + NK+ S + + L G+ +YNAL A + I + Sbjct: 246 H------IAWRDNKECSQESCALQTY-----LYGKHNLYNALAGIAAVKILTNKPLCKIA 294 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + +E V GR E V + VD+AHT + ++ I ++ R +I VVFG GGD Sbjct: 295 QAMENFGGVSGRMEVV---HHKPLVIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGD 348 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIE 447 RD+ KRP MG A + AD +T DNPRSEDP +I +I G+P + + +R + Sbjct: 349 RDKSKRPKMGACAFEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKK 408 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 AI A+ L + +VL++ GKG E I+ N + D +++RE Sbjct: 409 AIIQALNELQENEVLLILGKGDEDCQIIGNNKIYFD-DREVVRE 451 >gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis Uo5] Length = 481 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 149/506 (29%), Positives = 232/506 (45%), Gaps = 60/506 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + E + +S DSR ++ +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKERTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVQNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL K S A++ D V+K + F + I N + Sbjct: 230 ----RLLMKNSRAVVINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAF 277 Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345 + S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 278 SFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGIL 390 Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N++ D + Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDI 488 ++AGKG + IV ++ D I Sbjct: 451 IIAGKGADCYQIVQGKKEDYPGDAAI 476 >gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia recurrentis A1] Length = 508 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 60/479 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR + ++F A+ G +G FI AI +G+ IV ++ D Sbjct: 28 EVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDIDFYD----- 82 Query: 87 RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 SN + VD N ++F+S FA Y + + I+ VTGT GKSSV ++ + + G Sbjct: 83 -SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGA 141 Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++G ST+ F +D R +TP + LS + + V + +E++SHG Sbjct: 142 ---KVGFISTV--FLEDGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHG 196 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD RL I+ TN+ +H+++H T Q Y AK+ LF II DD Sbjct: 197 LDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHGGFGIINMDDN 256 Query: 252 YSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + M + A + + Q F + HNK + V Sbjct: 257 HFSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFE---FYHNKTKYAARVN----- 308 Query: 302 FLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G F V N + A + I +D + ++ L + + GR + + I V Sbjct: 309 ----LTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLI-V 363 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + + + + R+I VFG G+RD KR + G+IA + +D+ I+ D++P Sbjct: 364 DYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSDVIILCDEDP 423 Query: 421 RSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 R ED +I +I GI FI +R AI AI + D++V GKGHE+ Sbjct: 424 RGEDSMQIIRDIAEGIVTKTLNRDLFFIP--DRKCAIEKAINIACSDDLVVTLGKGHES 480 >gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429] gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429] Length = 499 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 39/434 (8%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115 + +GA I +A L S + S N P +V N++ L++ ++ +G HPE Sbjct: 49 VVKGAFKIEYLTASLLDKISGIVTSRKEKINIPNLPHWIVSNSQIALAVLSAEFFG-HPE 107 Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167 IL +TGT GK+S + R L++ Q STI +F + LTTP Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225 L + G ++ +E SS ++R+ GI G+F N+ DHI + H T Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225 Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281 Y K ++L + S + DDA+ +E + A + G + +SV K H+KK Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 A ++ ++ +G +FL +PG F +YNA VA + +G + L +L + Sbjct: 281 --ADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400 PGR + T S G I VDYAH ++ +L +++ G+II+V G GD+ + +R Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGKDRRS 396 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456 G++ D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKA 456 Query: 457 NKQDVLVVAGKGHE 470 N D++V+A KG + Sbjct: 457 NINDLVVLAAKGED 470 >gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1] gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1] Length = 499 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 127/434 (29%), Positives = 209/434 (48%), Gaps = 39/434 (8%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115 + +GA I +A L S + S N P +V N++ L++ ++ +G HPE Sbjct: 49 VVKGAFKIEYLTASLLDKISGIVTSRKEKINIPNLPHWIVSNSQIALAVLSAEFFG-HPE 107 Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167 IL +TGT GK+S + R L++ Q STI +F + LTTP Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225 L + G ++ +E SS ++R+ GI G+F N+ DHI + H T Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225 Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281 Y K ++L + S + DDA+ +E + A + G + +SV K H+KK Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 A ++ ++ +G +FL +PG F +YNA VA + +G + L +L + Sbjct: 281 --ADLDESIFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400 PGR + T S G I VDYAH ++ +L +++ G+II+V G GD+ + +R Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRS 396 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456 G++ D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKA 456 Query: 457 NKQDVLVVAGKGHE 470 N D++V+A KG + Sbjct: 457 NINDLVVLAAKGED 470 >gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus F0211] gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus F0211] Length = 481 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 143/484 (29%), Positives = 233/484 (48%), Gaps = 45/484 (9%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQG 67 +F E+I++ F +R+ ++S DSR + A +F N KE F+ +A+ G Sbjct: 16 NFREIIDKGQYF-YHYRDLVFEKISYDSREVDASTLFFVKGDNFKKE----FLEKAVTAG 70 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124 + + S DF I P L+V++ ++ +SL A YG +P++ +LA TGT Sbjct: 71 LQLYI-----SEMDFEVGI----PALIVNDVKQAMSLLAMEFYG-NPQDKLKLLAFTGTK 120 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGV 182 GK++ A F I Q+S + +T+ F + + LTTP + L K ++ G Sbjct: 121 GKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFK-SALTTPESLDLFKMMATAVENGR 179 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240 TH+ +E SS + R+ G+ G F N+ DHI H T + YF K LL + Sbjct: 180 THLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLME 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 S A++ + EV+ +V S+ + F I + Q + GK Sbjct: 235 NSLAVVVNSEMDHFEVLAE------QVASM--EHDFYGQHSDNQIRHSQAFSFETSGKLA 286 Query: 301 D-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + F L G F NAL A C+ +G A + + + V PGR E V T G +++ Sbjct: 287 EKFDIQLIGRFNQENALAAVLACLRLGASVADIKKGIASTRV-PGRME-VLTQQNGAKVF 344 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDD 418 VDYAH SL +L ++ G+II+V G G++ + +R G + ++ ++ T D Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGKIILVLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404 Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476 +P EDP I EI I ++ +R EAI+ A+ + N++ D +++AGKG + I+ Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGADCYQII- 463 Query: 477 NGEK 480 NGEK Sbjct: 464 NGEK 467 >gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 149/280 (53%), Gaps = 11/280 (3%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S I + K L++ QG + ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 9 TTGSAIDVQKTLNHFVMQGASFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYHGD 68 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278 Y AK +LF KE II ADD + + + +A + ++G+++ Sbjct: 69 MARYEAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126 Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + ++ Q VT+ + + + L G F V N L+A +A+ ++ + Sbjct: 127 AQNIN--YHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ +FGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALVAARLHCKGQLWCLFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GKR +MG IA AD +VTDDNPR+EDP I A+I+ G+ Sbjct: 244 GKRALMGSIAEQWADHLVVTDDNPRTEDPGSIVADILSGL 283 >gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Streptococcus anginosus 1_2_62CV] Length = 481 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 144/486 (29%), Positives = 236/486 (48%), Gaps = 49/486 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQG 67 +F E+I++ F +R ++S DSR + A +F N KE F+ +A+ G Sbjct: 16 NFREIIDKGQYF-YHYRNLVFEKISYDSREVDASTLFFVKGDNFKKE----FLEKAVESG 70 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124 + V S DF TI P+++V++ ++ +SL A YG +P++ +LA TGT Sbjct: 71 LQFYV-----SETDFEVTI----PVILVNDVKQAMSLLAMEFYG-NPQDKLKLLAFTGTK 120 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGV 182 GK++ A F I Q+S + +T+ F + + LTTP + L K ++ G Sbjct: 121 GKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFK-STLTTPESLDLFKMMATAVENGR 179 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240 TH+ +E SS + R+ G+ G F N+ DHI H T + YF K LL + Sbjct: 180 THLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLME 234 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--- 297 S A++ + EV+ +V S+ + F IH+ Q + G Sbjct: 235 NSRAVVVNSEMDHFEVLAE------QVASM--EHDFYGQHSDNQIHHSQAFSFETSGILT 286 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + FD L G F NAL A+ C+ +G + + + + V PGR E V T G + Sbjct: 287 EKFDI--QLIGRFNQENALAASLACLRLGATISDIKKGIAATRV-PGRME-VLTQQNGAK 342 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416 ++VDYAH SL +L ++ GRI++V G G++ + +R G + ++ I+T Sbjct: 343 VFVDYAHNGVSLANLLSVVQEHQKGRIVLVLGATGNKGESRRKDFGLLINQHPELMVILT 402 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474 D+P EDP I EI I ++ +R EAI+ A+ + +K+ D +++AGKG + I Sbjct: 403 ADDPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAGKGADCYQI 462 Query: 475 VTNGEK 480 + NG+K Sbjct: 463 I-NGKK 467 >gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacterales bacterium GD 1] gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacterales bacterium GD 1] Length = 431 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/409 (28%), Positives = 190/409 (46%), Gaps = 52/409 (12%) Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-----NR 161 + L+G I+ +TGT+GK++ AS + G ++ T F D Sbjct: 54 AELFGIDKIKIVGITGTNGKTTTASAIYSFLLDLG---YKTAMQGTRGFFMNDEVIEGKS 110 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTPS + K + G +E SSH + Q R++G+K TN+ +DH+DYH+ Sbjct: 111 LTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERIEGLKFELKILTNITQDHLDYHK 170 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----------VLSVG 271 T Y K F++ E +I D+ S +K G L+ Sbjct: 171 TIGEYIAVKNSFFQD----EGKKLINKDEPRSAFNIKNTFTYGIENPASYKLMAYSLNNA 226 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 G H K+V F L G F +YN + A G + + +D L Sbjct: 227 SSGIIQHFKEVVP-----------------FTSSLHGFFNLYNLMAAIG-AVDLLVDEKL 268 Query: 332 --VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 ++E ++ V GR E V + VD+AHT + ++ +L ++ ++VVFG Sbjct: 269 EKIVEVVDNFAGVSGRMEQV---CELPNVIVDFAHTPDGMQQVLNALK---EKELLVVFG 322 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446 GGDRD+ KRP+MG++A LA +T DNPR+EDP+ I +I+ GI + NR Sbjct: 323 AGGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDILEGIEDRSIVSVELNRK 382 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495 +AI A++ + +V+V+ GKG E I+ + + D +++RE+L + Sbjct: 383 KAIEMALDDQGEGEVVVILGKGDEAFQIIYDKQFPFD-DREVVRELLNI 430 >gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 297 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 150/282 (53%), Gaps = 19/282 (6%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY AK +LF P +I DD + +E+ + Sbjct: 6 LTNLSRDHLDYHGTMEAYAAAKAKLFA--WPDLKCRVINLDDDFGRELAAVKQESRLITY 63 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S +++ + + + T ++ +G+ F L G F + N L A G + G+ Sbjct: 64 SQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLAAVGALL--GL 120 Query: 328 DSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 D AL +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R GR++ Sbjct: 121 DYALDEILKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLL 179 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN- 444 +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I PGF+ Sbjct: 180 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKV 236 Query: 445 -----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 R +AI I N DV+V+AGKGHE + NG+++ Sbjct: 237 RFIEGRGQAIAELIASANANDVVVLAGKGHEDYQEI-NGQRQ 277 >gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus equinus ATCC 9812] gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus equinus ATCC 9812] Length = 483 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 146/510 (28%), Positives = 239/510 (46%), Gaps = 51/510 (10%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDG 56 K D++ KD F E+I + + + W E +++S DSR + + +F A KE Sbjct: 6 KTLDILKKDHNFREIIFH-NHYSLDWEENPSFSKISFDSRDVDSSTLFFAKGATFKKE-- 62 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115 ++ QA+ G V Y L + P ++V + +K +SL A YG HPE Sbjct: 63 --YLEQAVQLGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYG-HPEE 110 Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAK 172 I+A TGT GK++ A F I ++S + F T+ ++LTTP + L K Sbjct: 111 KLKIIAFTGTKGKTTAAYFTYNILKQSHKPAMFSTMNTTLDGKTFFKSKLTTPESLDLFK 170 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAK 230 ++ G+TH+ +E SS R+ G+ G+F N+ DHI H T + YF K Sbjct: 171 MMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK 230 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 RL L+ ++ A Y K V ++ + G + I N + Sbjct: 231 -RL---LMTNSKAVVVNAGMDYFKVVTQQVADKPHDFYGSGSEN---------TIENGRA 277 Query: 291 VTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V GK +D L G F NAL A C+ +G + + + + V PGR E Sbjct: 278 FDFDVTGKLAGHYDI--QLIGSFNQENALAAGLACLRLGTSLKDIKKGISETSV-PGRME 334 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V T + G +++VDYAH +SLE +L + G++ ++ G G++ + +R +I Sbjct: 335 VV-TQANGAKVFVDYAHNGDSLEKLLSVVEEHQKGQLYLILGATGNKGESRRADFARIIN 393 Query: 408 DLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVLVV 464 ++ I+T D+P EDP+ I EI I ++ + +R +AI A+ + N+ D +++ Sbjct: 394 AHQNLNVILTADDPNYEDPQAIAEEIASQITRSLDIQVDREKAIAKAMLLTKNENDAVII 453 Query: 465 AGKGHETVHIVTNGEKKMSV-DCDIIREIL 493 AGKG + IV NGE+ D +I ++ L Sbjct: 454 AGKGADAYQIV-NGERTAYAGDLNIAKKYL 482 >gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Regiella insecticola] Length = 297 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 148/280 (52%), Gaps = 11/280 (3%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S I + K L++ QG ++E SSHGL QHR+ + A FTNL RDH+DYH Sbjct: 9 TTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYHGD 68 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIH 278 Y AK +LF KE II ADD + + + +A + ++G+++ Sbjct: 69 MARYKAAKWQLFSTHHAKEK--IINADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLE 126 Query: 279 LKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 K + ++ Q +T+ + + + L G F V N L+A +A+ ++ + Sbjct: 127 TKNIN--YHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLKKLVATV 184 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +L V GR E R + VDYAHT ++LE L R G++ VFGCGGDRD+ Sbjct: 185 SQLQAVCGRMEVFNALDRP-TVIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436 GKR +MG IA AD +VTDD+PR+EDP I A+I+ G+ Sbjct: 244 GKRALMGGIAEQWADHLVVTDDSPRTEDPGVIVADILSGL 283 >gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate [Borrelia duttonii Ly] Length = 508 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 60/479 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I ++ DSR + ++F A+ G +G FI AI +G+ IV ++ D Sbjct: 28 EVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDIDFYD----- 82 Query: 87 RSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142 SN + VD N ++F+S FA Y + + I+ VTGT GKSSV ++ + + G Sbjct: 83 -SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMGA 141 Query: 143 SSFQIGPTSTISSFAQDN---------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++G ST+ F +D R +TP + LS + + V + +E++SHG Sbjct: 142 ---KVGFISTV--FLEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHG 196 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD RL I+ TN+ +H+++H T Q Y AK+ LF II DD Sbjct: 197 LDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHGGFGIINMDDN 256 Query: 252 YSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + M + A + + Q F + HNK + V Sbjct: 257 HFSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFE---FYHNKIKYAARVN----- 308 Query: 302 FLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 L G F V N + A + I +D + ++ L + + GR + + I V Sbjct: 309 ----LTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQDINFGQDFSLI-V 363 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 DYAHT + + + + R+I VFG G+RD KR + G+IA + +D+ I+ D++P Sbjct: 364 DYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSDVIILCDEDP 423 Query: 421 RSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 R ED +I +I GI FI +R AI AI + D++V GKGHE+ Sbjct: 424 RGEDSMQIIRDIAEGIVTKTLNKDLFFIP--DRKCAIEKAINIACSDDLVVTLGKGHES 480 >gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica SIR-1] gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica SIR-1] Length = 455 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 61/458 (13%) Query: 71 IVVSSAYSLQDFSATIRSN-----TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 +VV A+ FSA + ++ TP LV+ + L + A+ +G E ++ +TGT Sbjct: 1 MVVDEAH----FSAAVEADPDLAHTPRLVLRGLGEHLPVLAAAWHGWPGEALSLAGITGT 56 Query: 124 SGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYL 177 +GK++ A + I R G ++G T ++ D + TTP P+ L L+ Sbjct: 57 NGKTTTAHLLGAIASHPRGGRPHLRLG---TTGNWLVDREVHAGFTTPFPVELQALLAEA 113 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G +E SSH L Q R ++ A + T+ +DH+D+H AY AK L Sbjct: 114 HDRGARCGVMEVSSHALAQGRAKPLRYRAVALTSFSQDHLDFHPDMAAYLEAKCELARRH 173 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------- 290 L + A+ E + + + G + ++ + K Q Sbjct: 174 LHVDGLAVA------PLEQGRASEAFLAAAEAAGVERRWRTARSAAGAGAKAQLRVEAQL 227 Query: 291 ---------VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKL 339 V ++ D PL G F + N +V + +A+G+D L + + L Sbjct: 228 PLQPGEGTAVRVATPAGALDLRSPLVGAFNLDNLMVT--VALALGLDFGLDTIADALRAA 285 Query: 340 HVVPGRFEFVGTNSRGG-RIYVDYAHTSN----SLEMILKNIRTITSGRIIVVFGCGGDR 394 PGR E V G +YVDYAHT + SLE L++ R GR +VV GCGGDR Sbjct: 286 TGAPGRLEAVALPGVAGPAVYVDYAHTPDAVARSLEA-LEHARRARGGRTVVVLGCGGDR 344 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIE 447 D KRP+MG++A A T DNPR+EDP I ++I G G + + +R Sbjct: 345 DPSKRPLMGEVASRGAQRFWATSDNPRTEDPASIVDQMIAGALGPDAGGAELVREVDRAR 404 Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 AI +AI +DV+++AGKGHE ++ GE K+ D Sbjct: 405 AIASAIAEAAAEDVVLIAGKGHEDYQVI--GETKIHFD 440 >gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter suis HS1] gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter suis HS1] Length = 446 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 188/386 (48%), Gaps = 36/386 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174 I+ +TGT+GK++ AS + + G S +G S + LTTPS + + + Sbjct: 66 IIGITGTNGKTTTASLIYSLLLDLGYSCALLGTRGFFFNDSCLKQKGLTTPSLLEVYANI 125 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +++G + +E SSH ++Q R+ G+ A TN+ DH+DYH + Y R+ Sbjct: 126 EQATNRGAHYFVMEVSSHAINQERILGLDFSAKVITNITSDHLDYHGNLEEY----RRVK 181 Query: 235 EELLPKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 L ES II DDA+ + K A H V + QG H +C Sbjct: 182 NAFLSDESLKIINRDDAFVRFNPKNAYGYAIEHKTHLSVNAYSLQGLSAH---ICFTEKP 238 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRF 346 + S E ++ PL G +YN L+A LC+ + +L + + + V GR Sbjct: 239 GRYQNS-EFEEGLLYSPLVGRHNLYN-LLAGILCVKLLTKKSLKTLCDLIPHFLGVKGRM 296 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V + VD+AHT++ E I + +T +I +FG GG+RD+ KRP+MG IA Sbjct: 297 EVVHEQPL---VIVDFAHTADGFEQIFNSFKT---RKIKALFGAGGNRDKSKRPLMGAIA 350 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQ 459 A +T DNPR E+P I +I+ GI +EK +++ +AI A++ L Sbjct: 351 CKYASKVYITSDNPRYEEPMAIMQDILVGIA--VEKRDKVILEIDRYKAICLALQELKSD 408 Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVD 485 ++L++ GKG E+V I+ G+K + D Sbjct: 409 EILLILGKGDESVQII--GDKTIPFD 432 >gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis B6] Length = 481 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 151/513 (29%), Positives = 237/513 (46%), Gaps = 64/513 (12%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFI 60 D++ KD F E+I+Q + + + + +S DSR ++ +F A KE F+ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVKEDTLFFAKGAAFKKE----FL 63 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118 AI+QG V Y + P+++V++ +K +SL A YG E IL Sbjct: 64 ISAISQGLGWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKIL 114 Query: 119 AVTGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 A TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 115 AFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSF------STPENIDLF 168 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNA 229 ++ G TH+ +E SS HR+ G+ G F N+ DHI H + + YF Sbjct: 169 DMMAQAVKNGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYH 228 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K LL + S A+I D V+K +V + + F + I N + Sbjct: 229 K-----RLLMENSRAVIINSDMDHFSVLKE------QVENQDHD--FYGSQSSNQIENSK 275 Query: 290 QVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVP 343 + S GK D+D L G F NA+ A C+ +G LE ++K VP Sbjct: 276 AFSFSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVP 329 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G Sbjct: 330 GRME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFG 388 Query: 404 KIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-D 460 + +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D Sbjct: 389 LLLNQHPEIQVFLTADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELD 448 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKG + IV ++ D + L Sbjct: 449 AVIIAGKGADCYQIVQGKKEAYPGDAAVAENYL 481 >gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Arcobacter butzleri RM4018] gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Arcobacter butzleri RM4018] Length = 429 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 40/351 (11%) Query: 157 AQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +D LTTP + +++ KA+ G +E SSH ++Q+R++G+ TN+ Sbjct: 103 VEDYSLTTPIQLGNFVHIQKAIQ----NGCQFFVMEVSSHAIEQNRIEGLTFALKIHTNI 158 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH+T + Y +R+ L ES ++ DD K A + LS Sbjct: 159 TRDHLDYHKTIEEY----IRVKNSFLSDESVKLVNIDDNVMKYNFTNAFTYSLKNLSDYK 214 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL- 331 K+ + +V S + K + F + G F +YN L+A+ + I +L Sbjct: 215 VTKY-------EFEHGMKVEFSYKEKTYTFTSMMMGIFNIYN-LMASIAAVHITTQKSLE 266 Query: 332 -VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L+ V GR E V N + VD+AHT + ++ +LK + + II VFG Sbjct: 267 DICQTLKNFSCVSGRMEIVSLNPL---VIVDFAHTPDGMDEVLK---SFPNKDIICVFGA 320 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------ 444 GG+RD KRP+MG++A + IVT DNPR E+P+ I +I+ GI +K N Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGIN---DKSNVEVLID 377 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 R EA++ AI + N++ V++V GKG E I+ G+KK D D + +IL Sbjct: 378 RKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSDKDEVLKILN 426 >gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Arcobacter butzleri JV22] gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Arcobacter butzleri JV22] Length = 429 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 40/351 (11%) Query: 157 AQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +D LTTP + +++ KA+ G +E SSH ++Q+R++G+ TN+ Sbjct: 103 VEDYSLTTPIQLGNFVHIQKAIQ----NGCQFFVMEVSSHAIEQNRIEGLTFALKIHTNI 158 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH+T + Y +R+ L +S ++ DD K A + LS Sbjct: 159 TRDHLDYHKTIEEY----IRVKNSFLSDDSVKLVNIDDNVMKYNFTNAFTYSLKNLSDYK 214 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL- 331 K+ + +V S + K + F + G F +YN L+A+ + I +L Sbjct: 215 VSKY-------EFEHGMKVEFSYKEKTYTFTSMMMGIFNIYN-LIASIAAVHITTQKSLE 266 Query: 332 -VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + + L+ V GR E V N I VD+AHT + ++ +LK + + II VFG Sbjct: 267 DICQTLKNFSCVSGRMEIVSLNPL---IIVDFAHTPDGMDEVLK---SFPNKDIICVFGA 320 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------ 444 GG+RD KRP+MG++A + IVT DNPR E+P+ I +I+ GI +K N Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGIN---DKSNVEVLID 377 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV-DCDIIREILG 494 R EA++ AI + N++ V++V GKG E I+ G+KK D D + +IL Sbjct: 378 RKEALKKAISLANEKSVILVLGKGDEATQII--GDKKFEFSDKDEVLKILN 426 >gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC BAA-1163] gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC BAA-1163] Length = 499 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 126/434 (29%), Positives = 208/434 (47%), Gaps = 39/434 (8%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRS--------NTPILVVDNTRKFLSLFASRLYGKHPE 115 + +GA I +A L S + S N P +V N++ L++ ++ + HPE Sbjct: 49 VVKGAFKIEYLTASLLDKISGIVTSRTEKIDLPNLPHWIVSNSQIALAVLSAEFF-VHPE 107 Query: 116 N---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLTTPSP 167 IL +TGT GK+S + R L++ Q STI +F + LTTP Sbjct: 108 KKLKILGITGTKGKTSSTYMAYSLLDR--LTNHQTAMFSTIDTFLGRGIKFKSELTTPES 165 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQA 225 L + G ++ +E SS ++R+ GI G+F N+ DHI + H T Sbjct: 166 YELFSNMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFAD 225 Query: 226 YFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKK 281 Y K ++L + S + DDA+ +E + A + G + +SV K H+KK Sbjct: 226 YLAHK-----KMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKK 280 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 A ++ ++ +G +FL +PG F +YNA VA + +G + L +L + Sbjct: 281 --ADLDESVFYLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI 338 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400 PGR + T S G I VDYAH ++ +L +++ G+II+V G GD+ + +R Sbjct: 339 -PGRMVKIKTKSHG-LIIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRS 396 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML 456 G++ D+A +T D+P +EDP +I +I I E+ +R +AI+ AI+ Sbjct: 397 QFGEVISKFVDVAYLTTDDPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKA 456 Query: 457 NKQDVLVVAGKGHE 470 N D++V+A KG + Sbjct: 457 NTNDLVVLAAKGED 470 >gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Vibrionales bacterium SWAT-3] Length = 484 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 132/473 (27%), Positives = 218/473 (46%), Gaps = 22/473 (4%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L L F Q I S++S H+Q +FV G D H +I AI GA AI+ Sbjct: 2 LSETLKSFLKQLGALSIRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAITNGAVAIIA 61 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVA 130 + I ++ P+ V + + SL + + ++P + +TGT+GK++VA Sbjct: 62 TKP---------ISASVPVFVTGS--YYQSLLLIKAFYQYPHKKIRHIGITGTNGKTTVA 110 Query: 131 SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + Q+ + S++ IG + Q+ TTP + L ++ VT +E Sbjct: 111 HGLNQVLKTKRQSAY-IGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMEL 169 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 SSH L Q R + L G TN+GRDH+DYH+T Y AK+++ + + P + A+I D Sbjct: 170 SSHALVQDRAGFVPLSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGT-AVINLD 228 Query: 250 DAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D ++ ++RA S+ ++++ + ++ +G LP Sbjct: 229 DHHANVAIERACSRVNVLTFSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERVFSQLPF 288 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V N L A +A+ A + L + GR +++ ++ G VDYAH + Sbjct: 289 LFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRSKYLSLDN-GALALVDYAHNFDG 347 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 L + + I++ ++ R+I V G GDR + I GK+ +D+ I T DNP E E I Sbjct: 348 LTALYQGIQSQSAKRVITVVGVTGDRIRDAADI-GKLCATHSDVVIFTSDNPLGEMQEDI 406 Query: 429 -RAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 RA P E +R EAI+ A ++ D+++V GKG ET +T + Sbjct: 407 FRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGSETHQYITTNQ 459 >gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis DSM 7299] gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis DSM 7299] Length = 425 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 116/373 (31%), Positives = 185/373 (49%), Gaps = 39/373 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPI--- 168 ++ +TGT+GK++ A+ + + G +++ T F + R LTTP + Sbjct: 61 VIGITGTNGKTTTAAAIYSLLLDLG---YKVALQGTRGFFINEQRVEEYSLTTPVQLGNF 117 Query: 169 -YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 ++ KA+ +E SSH ++Q R++G+ TN+ RDH+DYH+T + Y Sbjct: 118 AHIQKAIE----NSCDFFVMEVSSHAIEQKRIEGLNFELKILTNITRDHLDYHKTIEEYI 173 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 N K F + +S +I D E+ + + C L+ G + + + + Sbjct: 174 NVKNSFFND----DSKKLINKD-----EIKAKFNPKNC--LTYGLDSPSTYKVQAYSFKD 222 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGR 345 V + K F + G F VYN L AA + + + +L + E +E V GR Sbjct: 223 GMHVALQNFEKVESFTSMMMGLFNVYN-LTAAIAAVHMTTNKSLNEICEAVENFAGVSGR 281 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + N I VD+AHT + ++ +L ++ IIVVFG GGDRD+ KRPIMGK+ Sbjct: 282 METLSLNPY---IIVDFAHTPDGMKEVL---QSFGHKDIIVVFGAGGDRDKAKRPIMGKV 335 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLNKQDVL 462 A A IVT DNPR EDP+ I +I+ GI +E + NR AI+ AI++ ++ V+ Sbjct: 336 ADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKIAIKKAIDLYSENSVI 395 Query: 463 VVAGKGHETVHIV 475 +V GKG E + Sbjct: 396 LVLGKGDEEYQTI 408 >gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Sulfuricurvum kujiense DSM 16994] gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfuricurvum kujiense DSM 16994] Length = 431 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 108/375 (28%), Positives = 186/375 (49%), Gaps = 25/375 (6%) Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTP 165 +++G ++ +TGT+GK++ AS + + G + G + A + LTTP Sbjct: 55 KVFGLDRIRVIGITGTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTP 114 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 + + + ++ + G + +E SSH ++Q R+ GI TN+ +DH+DYH++ + Sbjct: 115 TVLNTYRHMAQAIASGCEYFVMEVSSHAIEQERIAGITFALKILTNITQDHLDYHESIEE 174 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 Y K F++ ES +I D+ ++ K A + G + + ++ Sbjct: 175 YTRIKNLFFQD----ESKKLINKDEGKAEFNFKNA-------FTYGVENPATYKIIAYSL 223 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVP 343 +N + F+ L G F +YN + AA + + D +L + + +E V Sbjct: 224 NNGVSGVLKYFEDHVPFVSSLHGFFNLYN-ITAAMAAVHLVTDESLEKIADVVENFGGVS 282 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GR E V S + VD+AHT + +E +L ++ ++VVFG GGDRD+ KRP+MG Sbjct: 283 GRMEVV---SESPLVIVDFAHTPDGMEQVLNALK---EKEVLVVFGAGGDRDRKKRPLMG 336 Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD 460 K+A+ A VT DNPR EDP+ I +I+ GI + NR AI A++ + + Sbjct: 337 KVAVAYAKKVYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKERSGDE 396 Query: 461 VLVVAGKGHETVHIV 475 V+++ GKG ET I+ Sbjct: 397 VVLILGKGDETSQII 411 >gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase [Nitratifractor salsuginis DSM 16511] gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nitratifractor salsuginis DSM 16511] Length = 434 Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 115/349 (32%), Positives = 175/349 (50%), Gaps = 39/349 (11%) Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 ++ +TTPS + + G + +E SSH +DQ R++G+ TN+ RDH+ Sbjct: 105 EEKHMTTPSILETLWNMKRAKEAGAEYFVMEVSSHAIDQDRIEGLDFALKVHTNVTRDHL 164 Query: 218 DYHQTQQAYFNAKMRLFEE----LLPK-ESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVG 271 DYH T + Y K F + LL K E +I + +AY+ V A +VL+ Sbjct: 165 DYHGTLEEYRRVKSLFFSDDSLKLLNKDEIKSITFNPKNAYTYGV---EEPATFKVLAYS 221 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 Q + V +Q+ F + G F +YN L+AA + + D L Sbjct: 222 LQN---GISAVVQFRQEQEA----------FFSNMMGLFNLYN-LLAAIASVKLLTDRPL 267 Query: 332 --VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + +E V GR E V I VD+AHT + + +L +++ ++VVFG Sbjct: 268 AEICDVVENFGGVSGRMEVVSAKPT---IIVDFAHTDDGMYRVLDSLK---DKDLVVVFG 321 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----N 444 GGDRD+GKRP MG +A A VT DNPRSEDPE I AEI+ G+ G ++G + Sbjct: 322 AGGDRDRGKRPRMGAVAGRFAKKIYVTSDNPRSEDPEAIIAEILQGLKG--KEGVRAIVD 379 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R EAI AI+ L + ++L++ GKG E+ + G K D +++R+IL Sbjct: 380 RREAIERAIDELQEDEILLILGKGDESTQEIA-GVKHPFDDREVVRQIL 427 >gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Planococcus donghaensis MPA1U2] Length = 499 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 125/465 (26%), Positives = 218/465 (46%), Gaps = 29/465 (6%) Query: 46 FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 F + G DGHL+I +AIA GA I+ S+ L ++ A + VV N R+ L+ Sbjct: 40 FFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEY-AKQHPDLSFAVVPNVREALAYL 98 Query: 106 ASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 + Y + P+ L VTGT+GK++ A++V + G+ IG T + D ++ Sbjct: 99 SDFFY-RSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGFIGTTGILR---MDGKI 154 Query: 163 -------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 TTP L K + +G V++E SS LDQ R++GI+ TN+ + Sbjct: 155 PFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMRVEGIRFDVAIHTNISEE 214 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQG 274 H++YH+ + Y +K+ LF++ A++ DD +KE+++ + G Sbjct: 215 HLEYHKIFEHYLQSKLMLFKQ----SKAAVVNVDDKGMAKEILEVISYPHLTYSNRVDSG 270 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + + + + +G+ + PL GE+ N A G + G + ++ Sbjct: 271 ADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAIGSALLSGQNIEAIVT 330 Query: 335 HLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 L K+ V GRF+ + G ++R ++ +DYAHT +L +L ++ ++ R+I + G Sbjct: 331 VLPKMSQVEGRFQVIQGPDNR--KVILDYAHTPVALSAVLNEVKKLSHNRLIALIAGIGI 388 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IP---GFIEKGNRIEA 448 RD K P M K A AD+ +VT D+P +P + ++ G +P I +R EA Sbjct: 389 RDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVIDAVLKGFTVPYKQQVITANSRREA 448 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + A++ +D+++++ IV GE D II E Sbjct: 449 VLAALKESGPEDIILLSSGSINGAQIV-KGEYIPHSDEAIIEEFF 492 >gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein [Carboxydibrachium pacificum DSM 12653] Length = 260 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 15/258 (5%) Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDF 302 ++I DD YS +++ + +VL+ G + ++ K++ + + + ++ K + Sbjct: 7 SVINIDDKYSSMMIESSKG---KVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEI 63 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361 +PG F VYNAL A + +GI V E L HV V GRFE V T R +++D Sbjct: 64 SLKIPGLFSVYNALAAITVADFLGIPLRSVREALS--HVTVKGRFEPVETG-RDFYVFID 120 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT + + I++ ++ +GR I+VFG GGDRD+ KRP+MG++A AD I+T DNPR Sbjct: 121 YAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDNPR 180 Query: 422 SEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 SE+P++I A+I GI ++ +R EAIR A+ K DV+++AGKGHET I+ Sbjct: 181 SENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII-- 238 Query: 478 GEKKMSVD-CDIIREILG 494 G+K + D +I++EIL Sbjct: 239 GDKVIPFDEREIVKEILA 256 >gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 483 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 140/495 (28%), Positives = 225/495 (45%), Gaps = 60/495 (12%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + + W+E +++S DSR +F A KE ++ QAI G V Y Sbjct: 26 YSLDWKENPSFSKISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 L + P ++V + +K +SL A YG HPEN I+A TGT GK++ A F Sbjct: 82 EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++S + F T+ ++LTTP + L K ++ G+TH+ +E SS Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ G+F N+ DHI H T + YF K LL S A++ Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242 Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302 NAG +V Q F I N + V GK +D Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F NA+ A C+ +G A + + + + VPGR E + T + G +++VDY Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421 AH +SLE +L + G + ++ G G++ + +R ++ ++ I+T D+P Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408 Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479 EDP+ I EI + ++ + +R +AI A+ N + D +++AGKG + IV NGE Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467 Query: 480 KKMSV-DCDIIREIL 493 + + D +I + L Sbjct: 468 RTVYAGDLNIAKNYL 482 >gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp. Y-400-fl] Length = 509 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 123/413 (29%), Positives = 183/413 (44%), Gaps = 29/413 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR ++ G +FVAI G DGH FI QAIA+GA A+VV Y + A Sbjct: 26 VQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAIARGAVAVVVDQRYWDERPVAVPVVV 85 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++R L+ A+ Y +P L G +G ++ Q + +G Sbjct: 86 V-----ADSRVALAPLAAAFY-DYPGRELTTIGITGTKGKSTTTDVTAQLLAATGRMVGM 139 Query: 150 TSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201 ST+ + D R +TP + L + + G +EA+SH L RL G Sbjct: 140 ISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGCDTAVIEATSHALSPRWGRLVG 199 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 N+G +H+DYH T + Y K +LF L + AI+ ADD + Sbjct: 200 CAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGERSGSRWAIVNADDPNHAYFLDA 259 Query: 260 AHNAGCRVL-----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A R+ QG+ +H + ++ V ++ D PLPG F N Sbjct: 260 APADAVRLRYGLHEPADVQGQILHSGPMSSV-----VRVTSPWGTTDLTVPLPGRFNASN 314 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMIL 373 AL A L +A+ AL V R V ++ + + VDYAH +S E I Sbjct: 315 ALAA--LTVALSQGVALEAAAAALAGVRAPRGRMVPIDAGQPFAVIVDYAHNPDSFEQIF 372 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 +R GR+I VFG G+RD KR I G+IA + D+ ++TD++PR ED E Sbjct: 373 AMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLVLTDEDPRGEDRE 425 >gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus bovis ATCC 700338] gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus bovis ATCC 700338] Length = 483 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 140/495 (28%), Positives = 224/495 (45%), Gaps = 60/495 (12%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + + W+E +++S DSR +F A KE ++ QAI G V Y Sbjct: 26 YSLDWKENPSFSQISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 L + P ++V + +K +SL A YG HPEN I+A TGT GK++ A F Sbjct: 82 EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++S + F T+ ++LTTP + L K ++ G+TH+ +E SS Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ G+F N+ DHI H T + YF K LL S A++ Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242 Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302 NAG +V Q F I N + V GK +D Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F NA+ A C+ +G A + + + + VPGR E + T + G +++VDY Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421 AH +SLE +L + G + ++ G G++ + +R ++ ++ I+T D+P Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408 Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479 EDP+ I EI + ++ + +R +AI A+ N + D +++AGKG + IV NGE Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467 Query: 480 KKMSV-DCDIIREIL 493 + D +I + L Sbjct: 468 RTAYAGDLNIAKSYL 482 >gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase [Streptococcus gallolyticus UCN34] gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus gallolyticus UCN34] Length = 483 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 138/489 (28%), Positives = 224/489 (45%), Gaps = 48/489 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + + W+E +++S DSR +F A KE ++ QAI G V Y Sbjct: 26 YSLDWKENPSFSKISFDSREADKSTLFFAKGATFKKE----YLEQAIENGLTFYVSQVDY 81 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 L + P ++V + +K +SL A YG HPEN I+A TGT GK++ A F Sbjct: 82 EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++S + F T+ ++LTTP + L K ++ G+TH+ +E SS Sbjct: 132 NILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQA 191 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ G+F N+ DHI H T + YF K RL L+ ++ A Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-RL---LMANSKAVVVNAGMD 247 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPG 308 Y V ++ N G I N + V GK +D L G Sbjct: 248 YFNIVAQQVANTPHDFYGKGSDN---------TIENGRAFDFDVTGKLAGHYD--IQLIG 296 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F NA+ A C+ +G A + + + + VPGR E + T + G +++VDYAH +S Sbjct: 297 SFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDYAHNGDS 354 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427 LE +L + G + ++ G G++ + +R ++ ++ I+T D+P EDP+ Sbjct: 355 LEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQA 414 Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSV- 484 I EI + ++ + +R +AI A+ N + D +++AGKG + IV NGE+ Sbjct: 415 IAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGERTAYAG 473 Query: 485 DCDIIREIL 493 D +I + L Sbjct: 474 DLNIAKNYL 482 >gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas denitrificans DSM 1251] gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurimonas denitrificans DSM 1251] Length = 433 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 191/396 (48%), Gaps = 30/396 (7%) Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-----NR 161 ++L+G I+ +TGT+GK++ AS + G +++ T F D Sbjct: 54 AKLFGIEKIKIVGITGTNGKTTTASAIYSFLLDLG---YRVAMQGTRGFFMNDRVIEEKT 110 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTPS + K + S+ +E SSH + Q R++G+ TN+ +DH+D+H+ Sbjct: 111 LTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRVEGLNFELKILTNITQDHLDFHK 170 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 T Y K F++ + +I D+ S K + G + + Sbjct: 171 TLGEYIAVKNSFFQD----DGRKLINKDETKSSFNFKNT-------FTYGIENSATYRLI 219 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLH 340 +++N I + F L G F +YN + A A + G V ++ Sbjct: 220 AYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAIAATHLLSGKKLEEVTAVVDNFA 279 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E V S + VD+AHT + ++ +L ++ ++VVFG GGDRD+ KRP Sbjct: 280 GVSGRMEQV---SESPNVIVDFAHTPDGIQQVLNALK---EKELLVVFGAGGDRDRTKRP 333 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIE-KGNRIEAIRTAIEMLN 457 +MG++A LA +T DNPR+EDP+ I +I+ GI ++ + NR +AI A+ Sbjct: 334 LMGRVAASLAKKLYITSDNPRTEDPQDIVNDILEGIQDKSIVQVELNRRKAIENALSEQK 393 Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + +V+V+ GKG ET I+ + +K D +++REIL Sbjct: 394 ENEVVVILGKGDETYQIIYD-QKFPFDDREVVREIL 428 >gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis F0405] Length = 481 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 141/477 (29%), Positives = 223/477 (46%), Gaps = 43/477 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR I A +F N + +L QAI+ G V S +D+ I Sbjct: 35 FDAISYDSRKISASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P ++V++ ++ +SL A YG HPE +LA TGT GK++ A F I ++S + Sbjct: 85 -PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILKQSHRPAML 142 Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L ++ + TH+ +E SS R+ G+ Sbjct: 143 STMNTTLDGKNFFK-STLTTPESLDLFAMMAEAVANDRTHLIMEVSSQAYLVKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL K S A++ D V+K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFSVLKEQVE 256 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 + F + I N + + S GK D+D L G F NA+ A Sbjct: 257 --------DQEHDFYGSQSENQIENSKAFSFSATGKLAGDYDI--QLIGHFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 C+ +G + + + K V PGR E V T G ++++DYAH +SL+ +L + T Sbjct: 307 LACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLSVVETH 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438 +G I +V G G++ + +R G + D +I + +T D+P EDP I EI I Sbjct: 365 QTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEISSFITR 424 Query: 439 FIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +EK +R EAI+ A+ +K +D +++AGKG + IV +++ D I L Sbjct: 425 PVEKIADREEAIQRAMATTSKPEDAVIIAGKGADCYQIVNGIKEEYPGDAAIAERYL 481 >gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus LMD-9] gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus LMD-9] gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus thermophilus ND03] Length = 481 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 142/506 (28%), Positives = 234/506 (46%), Gaps = 62/506 (12%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68 +F ++INQ + W + +S DSR I +F A G K + F+ A+ G Sbjct: 16 NFRDIINQ-EYYYYSWTGVTFDHLSYDSRDITPSTLFFAKGAGFKLE---FLESAVQAGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 V Y + P ++V + ++ +SL A Y +HP++ +LA TGT G Sbjct: 72 GFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFY-QHPQDKLKLLAFTGTKG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ + F I ++S + +T+ +F + N LTTP + L + ++ S G+T Sbjct: 122 KTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSN-LTTPESLDLFRMMAEAVSNGMT 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241 H+ +E SS R+ G+ G F N+ DHI H T + YF K LL K Sbjct: 181 HLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKN 235 Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 S A+I D ++EV + H+ + GK + + + + Sbjct: 236 SQAVIVNSGMNHFDFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAK 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G+F NA+ A C+ +G LE ++K VPGR E + Sbjct: 283 GKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL- 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T + G +++VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + Sbjct: 336 TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYP 395 Query: 411 DI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGK 467 +I I++ D+P EDP I EI I + +R EAI+TA+ E D LV+AGK Sbjct: 396 EINVILSTDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + IV + D ++ ++ L Sbjct: 456 GADAFQIVNGKRTDYAGDIEVAKKYL 481 >gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 483 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 147/512 (28%), Positives = 242/512 (47%), Gaps = 55/512 (10%) Query: 2 KLQDLIYKD--FPELI--NQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKE 54 K +++ KD F E+I NQ S + W+E +++S DSR + + +F A KE Sbjct: 6 KTLEILKKDHNFREIIFHNQYS---LTWKENPSFSKISFDSRDVDSSTLFFAKGATFKKE 62 Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 ++ QAI +G V Y L + P ++V + +K +SL A YG HP Sbjct: 63 ----YLEQAIQKGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYG-HP 108 Query: 115 E---NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYL 170 E I+A TGT GK++ A F I ++S + F T+ ++LTTP + L Sbjct: 109 EEKLKIIAFTGTKGKTTAAYFAYNILKQSHKPAMFSTMNTTLDGKTFSKSKLTTPESLDL 168 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228 K ++ G+TH+ +E SS R+ G+ G+F N+ DHI H T + YF Sbjct: 169 FKMMATAVDNGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFY 228 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K RL L+ ++ A + K V ++ + L + GK I N Sbjct: 229 HK-RL---LMANSKAVVVNAGMDHFKVVAEQVAD-----LPHDFYGK----DSDNTIENG 275 Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + V GK +D L G F NAL A C+ +G + + + + V PGR Sbjct: 276 RTFDFDVTGKLAGHYDI--QLIGSFNQENALAAGLACLRLGTSPEDIKKGIAETSV-PGR 332 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G +++VDYAH +SLE +L + +G + ++ G G++ + +R ++ Sbjct: 333 MEVI-TQANGAKVFVDYAHNGDSLEKLLSVVEEHQTGNLHLILGATGNKGESRRADFARV 391 Query: 406 ALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEML-NKQDVL 462 ++ I+T D+P EDP+ I EI + +E + +R +AI A+ + D + Sbjct: 392 INAHPNLQVILTADDPNYEDPKAIAEEIASQVNRPLEIEVDREKAIAKAMSLTQTADDAV 451 Query: 463 VVAGKGHETVHIVTNGEKKMSV-DCDIIREIL 493 ++AGKG + IV NGE+ D +I ++ L Sbjct: 452 IIAGKGADAYQIV-NGERTAYAGDMNIAKKYL 482 >gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 641 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 144/534 (26%), Positives = 227/534 (42%), Gaps = 92/534 (17%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87 ++N VS DSR ++ G +FVA+ G K DGH + QA+AQGA A+V+ + L + T Sbjct: 40 QVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQTDL 99 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +++V +T L+ +YG N+ +TGT GK++ + + + + + Sbjct: 100 LSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTTAMITWLLNKVDYPAG 159 Query: 146 QIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 IG T+ + D R TTP L + L+ L + G V +E SS QHR+D Sbjct: 160 SIG---TLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCMEVSSQAAVQHRVD 216 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMK 258 + +FTN DH+DYH T + Y AK LF L K + A++ ADD AY + Sbjct: 217 ALAWQTMTFTNFTVDHLDYHHTVENYALAKASLFRG-LSKAATAVLNADDPLAYYLAQLT 275 Query: 259 RAHNAGCRVL--SVGYQGKFIHLKK----------------------------------- 281 +A + ++G +G F K Sbjct: 276 QAQKVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEKIPPESSREILCKAAA 335 Query: 282 ---------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSA 330 V ++ Q IS + PL G F + NAL +A + I ID Sbjct: 336 AGRVVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALAAIATAMVICPNIDLR 395 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGG-------------------RIYVDYAHTSNSLEM 371 + + VPGR E + + R+ +D+AHT ++E Sbjct: 396 TWAAAMATMPAVPGRLEIIDGQGQACPTCRPSNGKLNLEDTTTPYRVVIDFAHTPGAMEA 455 Query: 372 ILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L +R + ++ V+ G+RD+GKRP++ + LAD ++T + E+P +I Sbjct: 456 LLTEVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLADRIVLTLEEVGQENPAEIL 515 Query: 430 AEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 AE+ GF + N R EAIR I L D VV G E + + N Sbjct: 516 AELQA---GFRQPENIPVVPLRQEAIRYVISRLEPGDYFVVPSLGDEHTYNINN 566 >gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM 13280] gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM 13280] Length = 518 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 139/487 (28%), Positives = 212/487 (43%), Gaps = 32/487 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR + +FV +L QA+A GA A V Y + + Sbjct: 36 EIAYATDDSRRVVPRTLFVCKGAAFRREYLL--QALAAGAVAYVSEVDYEVD---GEVGH 90 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG---- 141 P ++V++ R L L A Y HP + A TGT GK++ A +++ I Sbjct: 91 EVPRVLVNDIRTALGLLADAAY-DHPSGRVKVCAFTGTKGKTTSAYYLRSILSEHAREMG 149 Query: 142 --LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + + G D+ LTTP L + + +S G HV +EASS + R Sbjct: 150 RPVPALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEASSQAIKFRRT 209 Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G+ G+FTN G DHI H T + Y +K+ LFE + + + D A Sbjct: 210 LGVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERC--RVAVVNLDMDVAERALAA 267 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNA 315 A RVL+ + + + ++ + +V + + P P F + NA Sbjct: 268 AHASRTVERVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSPAVFNLSNA 327 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSLEMIL 373 L A A+GI + + L + + PGR E + S GRI VDYAH SLE +L Sbjct: 328 LGAIACAEALGISADAIETGLSRAY-APGRMELYPSES--GRIMGVVDYAHNGMSLETLL 384 Query: 374 KNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---- 428 +++R R VVFG G + +R MG+ A LAD ++T+D+P EDP I Sbjct: 385 RDLRASYPDREFAVVFGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPEDPALICDAI 444 Query: 429 -RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 RA G + +R EAIRTA+ + V++V GKG++ + + D D Sbjct: 445 ARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTGKGNDPFMLRNGVREPYEPDGD 504 Query: 488 IIREILG 494 +R L Sbjct: 505 QLRRALA 511 >gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parauberis NCFD 2020] gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parauberis NCFD 2020] Length = 483 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 135/489 (27%), Positives = 232/489 (47%), Gaps = 53/489 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+F E++++ + + + + ++ DSR + +F A + +L AI G Sbjct: 15 KNFREVLDKENYY-FNYSALTFSNLTYDSRKVDMSTLFFAKGAAFKAEYL--ESAIKLGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 A V Y + P ++V + +K +++ A YG +P++ +LA TGT G Sbjct: 72 TAYVSEVDYQV---------GIPAIIVTDIKKAMAIIAKDFYG-NPQDKLKLLAFTGTKG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ A F I Q S + +T+ +F + ++LTTP + L + +S + G+T Sbjct: 122 KTTAAYFAYNILQESHKPAMLSTMNTTLDGKTFFK-SQLTTPESLDLFQMMSTIVDNGMT 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241 H+ +E SS R+ G+ G F N+ DHI H T + YF K L E Sbjct: 181 HLIMEVSSQAYLVERVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NS 236 Query: 242 SPAIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 II +D D +++V + H+ F + I N Q T S G Sbjct: 237 RAVIINSDMDHFDILAEQVANQEHD-------------FYGSQSENQILNSQAFTFSANG 283 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K D+D L G+F NA A C+ +G D + + + + VPGR E + ++ Sbjct: 284 KMAGDYD--IQLIGKFNQENATAAGLACLRLGADLTDIKQGIARTS-VPGRMEVI-SHPS 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +++VDYAH +SLE ++ + G I ++ G G++ + +R G++ + + + Sbjct: 340 GAKVFVDYAHNGDSLEKLVTVVEEHQKGNISLIIGATGNKGESRRADFGQVINNHPTLKV 399 Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHET 471 +T D+P EDP+ I EI + + + +R +AI TAI+ K+ D L++AGKG + Sbjct: 400 YLTADDPNFEDPQDICQEIANHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAGKGADA 459 Query: 472 VHIVTNGEK 480 IV NG+K Sbjct: 460 YQIV-NGQK 467 >gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 483 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 139/495 (28%), Positives = 224/495 (45%), Gaps = 60/495 (12%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + + W+E +++S DSR +F KE ++ QAI G V Y Sbjct: 26 YSLDWKENPSFSKISFDSREADNSTLFFTKGATFKKE----YLEQAIENGLTFYVSQVDY 81 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 L + P ++V + +K +SL A YG HPEN I+A TGT GK++ A F Sbjct: 82 EL---------DIPAIIVTDIKKAMSLIAMEFYG-HPENDLKIIAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++S ++ F T+ ++LTTP + L K ++ G+TH+ +E SS Sbjct: 132 NILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQNGMTHLIMEVSSQA 191 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ G+F N+ DHI H T + YF K LL S A++ Sbjct: 192 YLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHK-----RLLMANSKAVVV---- 242 Query: 252 YSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKVCAIHNKQQVTISVEGK---DFDF 302 NAG +V Q F I N + V GK +D Sbjct: 243 ----------NAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYD- 291 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G F NA+ A C+ +G A + + + + VPGR E + T + G +++VDY Sbjct: 292 -IQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTS-VPGRMEVI-TQTNGAKVFVDY 348 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPR 421 AH +SLE +L + G + ++ G G++ + +R ++ ++ I+T D+P Sbjct: 349 AHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPN 408 Query: 422 SEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGE 479 EDP+ I EI + ++ + +R +AI A+ N + D +++AGKG + IV NGE Sbjct: 409 YEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIV-NGE 467 Query: 480 KKMSV-DCDIIREIL 493 + D +I + L Sbjct: 468 RTAYAGDLNIAKNYL 482 >gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus LMG 18311] gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus thermophilus CNRZ1066] gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus thermophilus LMG 18311] gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus thermophilus CNRZ1066] Length = 481 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 142/506 (28%), Positives = 234/506 (46%), Gaps = 62/506 (12%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68 +F ++INQ + W + +S DSR I +F A G K + F+ A+ G Sbjct: 16 NFRDIINQ-EHYHYSWTGVTFDHLSYDSRDITPSTLFFAKGAGFKLE---FLESAVQAGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 V Y + P ++V + ++ +SL A Y +HP++ +LA TGT G Sbjct: 72 GFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFY-QHPQDKLKLLAFTGTKG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ + F I ++S + +T+ +F + N LTTP + L + ++ S G+T Sbjct: 122 KTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSN-LTTPESLDLFRMMAEAVSNGMT 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241 H+ +E SS R+ G+ G F N+ DHI H T + YF K LL K Sbjct: 181 HLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKN 235 Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 S A+I D ++EV + H+ + GK + + + + Sbjct: 236 SQAVIVNSGMNHFDFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAK 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G+F NA+ A C+ +G LE ++K VPGR E + Sbjct: 283 GKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL- 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T + G +++VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + Sbjct: 336 TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYP 395 Query: 411 DI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGK 467 +I I++ D+P EDP I EI I + +R EAI+TA+ E D LV+AGK Sbjct: 396 EINVILSTDDPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + IV + D ++ ++ L Sbjct: 456 GADAFQIVNGKRTDYAGDIEVAKKYL 481 >gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis ATCC 6249] Length = 481 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 141/486 (29%), Positives = 227/486 (46%), Gaps = 49/486 (10%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F E+INQ S + + + + +S DSR ++ +F V F+ AI+QG + Sbjct: 17 FREIINQGSYY-YNYSDVDFDSISYDSRKVKERSLF--FVKGASFKKEFLLSAISQGLDW 73 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 + QD+ I P ++V++ +K +SL A YG E ILA TGT GK++ Sbjct: 74 YIAE-----QDYEVGI----PAIIVNDIKKAMSLIAMEFYGNPQEKLKILAFTGTKGKTT 124 Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 A F I + + +T+ +F + + LTTP I L ++ G TH+ Sbjct: 125 AAYFAYNILAQHHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAVHNGRTHLI 183 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244 +E SS R+ G+ G F N+ DHI H + + YF K LL + S A Sbjct: 184 MEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENSRA 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFD 301 ++ D V+K + F + I N + S GK D+D Sbjct: 239 VVINSDMDHFSVLKEQVE--------DQEHDFYGNQSSNQIENSKAFGFSATGKLAGDYD 290 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRI 358 L G F NA+ A C+ +G LE ++K VPGR E V T G ++ Sbjct: 291 I--QLIGHFNQENAVAAGLACLRLGAS----LEDIQKGIAATRVPGRME-VLTQKNGAKV 343 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTD 417 ++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + +I + +T Sbjct: 344 FIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTA 403 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIV 475 D+P EDP I EI I +EK +R +AI+ A+ + +++ D +++AGKG + IV Sbjct: 404 DDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADRYQIV 463 Query: 476 TNGEKK 481 NG K+ Sbjct: 464 -NGVKE 468 >gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhodococcus jostii RHA1] Length = 502 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/317 (33%), Positives = 151/317 (47%), Gaps = 23/317 (7%) Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + L + L+ + + V++E SSHGL HR+DG G FTNL RDH+D+H AYF Sbjct: 171 VELQQTLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYF 230 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVC 283 AK RLFE + + A + DD + + + A V V + + H V Sbjct: 231 AAKARLFEP--GRCAAAAVGVDDEFGRRLA-----ATVTVPRVTFSSRTTAADFHASAVH 283 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 A T+ G L G QV NAL A G+D + +E VP Sbjct: 284 ADEGGTSFTLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVP 343 Query: 344 GRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 GR E V G+ +VDY H + +R++T GR+I V G G+RD GKR Sbjct: 344 GRLEAVDA----GQPFLAFVDYMHNPAGQRRLFPYLRSLTRGRVIAVVGATGERDPGKRV 399 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEM 455 +G A AD IVTD++P S+D +++R ++ G + +R EAI A+ + Sbjct: 400 PLGATAARFADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTL 459 Query: 456 LNKQDVLVVAGKGHETV 472 DV+VVAG+GH+ V Sbjct: 460 AAPGDVVVVAGRGHDRV 476 >gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae Taiwan19F-14] gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae Taiwan19F-14] gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TCH8431/19A] gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA04375] Length = 481 Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 60/511 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G +H+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVKNGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL + S A+I D V+K Y +F + I N + Sbjct: 230 ----RLLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAF 277 Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345 + S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 278 SFSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390 Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D + Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + I+ ++ D + L Sbjct: 451 IIAGKGADCYQIIQGKKESYPGDTAVAENYL 481 >gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pneumoniae 670-6B] Length = 481 Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 60/511 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI-CQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 TGT GK++ A F I QR S +++ G T SSF +TP I L Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSF------STPENIDLFDM 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G +H+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 171 MAQAVKNGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK- 229 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 LL + S A+I D V+K Y +F + I N + Sbjct: 230 ----RLLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAF 277 Query: 292 TISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGR 345 + S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 278 SFSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 332 ME-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLL 390 Query: 406 ALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVL 462 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D + Sbjct: 391 LNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + I+ ++ D + L Sbjct: 451 IIAGKGADCYQIIQGKKESYPGDTAVAENYL 481 >gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori P12] gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12] Length = 447 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +AK Sbjct: 126 SDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F + + E+ A+ + ++ + K+AH N L S+ YQ Sbjct: 186 SFFRDDGLKVINRDETNALFNPINVHTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK++ +H+ PL G + +YN L G+ + + ++ L Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVIIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL++ GKG E++ I Sbjct: 402 LENLKDDEVLLILGKGDESIQI 423 >gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori India7] Length = 447 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 188/382 (49%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R G+ TN+ DH+D+HQ + Y +AK Sbjct: 126 GDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185 Query: 232 RLFEE----LLPKESPAIIYAD-DAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ ++ ++ +++ +A++ + K+AH N L S+ YQ + Sbjct: 186 SFFKDEGLKVINRDETNVLFNPINAHTYALDKKAHLNVQAFSLNPFISASLCYQQDLRDL 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK++ IH+ PL G + +YN L G+ + + ++ L Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGISNSSKVIIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL++ GKG E + I Sbjct: 402 LENLKDDEVLLILGKGDENIQI 423 >gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPKX_438_AG0C1] Length = 447 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 199/402 (49%), Gaps = 58/402 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 A+E L +VL++ GKG E I + S D +++R+ Sbjct: 399 LNALENLKDDEVLLILGKGDENTQIFKDKTIFFS-DQEVVRD 439 >gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus parasanguinis ATCC 903] Length = 481 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 138/482 (28%), Positives = 225/482 (46%), Gaps = 53/482 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR + A +F N + +L QAI+ G V S +D+ I Sbjct: 35 FDAISYDSRKVSASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P ++V++ ++ +SL A YG HPE +LA TGT GK++ A F I ++S + Sbjct: 85 -PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILEQSHRPAML 142 Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L ++ + TH+ +E SS R+ G+ Sbjct: 143 STMNTTLDGKNFFK-STLTTPESLDLFSMMAEAVANDRTHLIMEVSSQAYLVKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVM 257 G F N+ DHI H T + YF K LL K S A++ D + +V Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFQVLADQVA 256 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYN 314 + H+ F + I + + S GK ++D L G F N Sbjct: 257 NQDHD-------------FYGSQSENQIETSKAFSFSATGKLAGNYDI--QLIGHFNQEN 301 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A C+ +G + + + K V PGR E V T G ++++DYAH +SL+ +L Sbjct: 302 AVAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLLS 359 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEII 433 + T +G I +V G G++ + +R G + D +I + +T D+P EDP I EI Sbjct: 360 VVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEIS 419 Query: 434 HGIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I +EK +R +AI+ A+ M +K +D +++AGKG + IV +++ D I Sbjct: 420 SYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADCYQIVNGVKEEYPGDAAIAER 479 Query: 492 IL 493 L Sbjct: 480 YL 481 >gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 295 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 144/270 (53%), Gaps = 16/270 (5%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TNL RDH+DYH T +AY AK +LF +I DDA+ +E+ + Sbjct: 4 LTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFGRELAGIKQESRLITY 61 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S +++ + + + T ++ +G+ F L G F + N L A G + G+ Sbjct: 62 SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNLSNVLSAVGALL--GL 118 Query: 328 DSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 D AL +L+ L KL GR + +G + + VDYAHT ++LE +L+ +R GR++ Sbjct: 119 DYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLL 177 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FI 440 +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P I +I G FI Sbjct: 178 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRPGFTAVDKVRFI 237 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 E R +AI I + DV+V+AGKGHE Sbjct: 238 E--GRGQAIAELIASASADDVVVLAGKGHE 265 >gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C150] gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. C150] Length = 481 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 140/507 (27%), Positives = 238/507 (46%), Gaps = 62/507 (12%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQG 67 ++F ++I+Q + W +S DSR + +F A G K + F+ A+ G Sbjct: 15 RNFRDIIDQDHYY-YSWTGVTFEHLSYDSRDVTPSSLFFAKGAGFKRE---FLENAVKTG 70 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTS 124 +S S +D+ I P ++V + ++ +SL A Y ++P++ +LA TGT Sbjct: 71 -----LSFYVSEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTK 120 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGV 182 GK++ A F I ++S + +T+ +F + + LTTP + L + +S G+ Sbjct: 121 GKTTAAYFAYNILKQSHKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFRMMSEAVDNGM 179 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPK 240 TH+ +E SS R+ G+ G F N+ DHI H T + YF K LL + Sbjct: 180 THLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLE 234 Query: 241 ESPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 S A+I D ++EV + H+ + GK + + + Sbjct: 235 NSQAVIVNSGMDHFDFVAEEVADKDHD---------FYGK----DSENTVQHSSGFSFKA 281 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349 +GK D+D L G+F NA+ A C+ +G LE ++K VPGR E + Sbjct: 282 KGKLAGDYDI--QLIGDFNQDNAMAAGLACLRLGAS----LEDIKKGIAQTSVPGRMEIL 335 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + G +++VDYAH +SL+ +L+ + GRI ++ G G++ + +R G + Sbjct: 336 -TQANGAKVFVDYAHNGDSLDKLLQVVTDHQKGRIALILGAPGNKGESRRKDFGHVLNTY 394 Query: 410 ADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAG 466 ++ I++ D+P EDP I EI I + +R EAI+TA+ E +D LV+AG Sbjct: 395 PEVDVILSADDPNKEDPLTICQEIASHINREVRIIVDREEAIKTAMSETTGSKDALVIAG 454 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + IV + D ++ ++ L Sbjct: 455 KGADAFQIVNGKHTDYAGDIEVAKKYL 481 >gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Helicobacter pylori SJM180] gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Helicobacter pylori SJM180] Length = 447 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 186/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y + K Sbjct: 126 GDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILTNITSDHLDFHQNIENYRDTKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ + ++ + KRAH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINTHTYALDKRAHLNVQAFSLNPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E + I Sbjct: 399 LNALENLKDDEVLLILGKGDENIQI 423 >gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus parasanguinis ATCC 15912] Length = 481 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 138/483 (28%), Positives = 225/483 (46%), Gaps = 53/483 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + +S DSR + A +F N + +L QAI+ G V S +D+ I Sbjct: 34 RFDAISYDSRKVSASTLFFVKGANFKKEYL--EQAISNGLGFYV-----SEKDYEVGI-- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++ ++ +SL A YG HPE +LA TGT GK++ A F I ++S + Sbjct: 85 --PAILVNDIKQAMSLIAMEFYG-HPEKQLKLLAFTGTKGKTTAAYFAYHILEQSHRPAM 141 Query: 146 QIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +T+ +F + + LTTP + L ++ + TH+ +E SS R+ G+ Sbjct: 142 LSTMNTTLDGKNFFK-STLTTPESLDLFAMMAQAVANDRTHLIMEVSSQAYLVKRVYGLT 200 Query: 204 LIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEV 256 G F N+ DHI H T + YF K LL K S A++ D + +V Sbjct: 201 FDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMKNSQAVVINSDMDHFQVLADQV 255 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVY 313 + H+ F + I + + S GK D+D L G F Sbjct: 256 ANQDHD-------------FYGSQSENQIETSKAFSFSATGKLAGDYDI--QLIGHFNQE 300 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NA+ A C+ +G + + + K V PGR E V T G ++++DYAH +SL+ +L Sbjct: 301 NAVAAGLACLRLGASLEDIQKGIAKTRV-PGRME-VLTQKNGAKVFIDYAHNGDSLKKLL 358 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEI 432 + T +G I +V G G++ + +R G + D +I + +T D+P EDP I EI Sbjct: 359 SVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYEDPLAIAEEI 418 Query: 433 IHGIPGFIEK-GNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 I +EK +R +AI+ A+ +K +D +++AGKG + IV +++ D I Sbjct: 419 SSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGADCYQIVNGVKEEYPGDATIAE 478 Query: 491 EIL 493 L Sbjct: 479 RYL 481 >gi|288940178|ref|YP_003442418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum DSM 180] gi|288895550|gb|ADC61386.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum DSM 180] Length = 487 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 121/391 (30%), Positives = 178/391 (45%), Gaps = 56/391 (14%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYL 170 + VTGT+GK++ +++ I G IG T+ F R T+P I L Sbjct: 115 RFIGVTGTNGKTTTVKYLESILAAHGRRVLSIG---TLGVFLDGVRQVETGFTSPPLIEL 171 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + L Q V +EASSH LDQ R+ GI +TN +DH+DYH+ + +YF AK Sbjct: 172 RRLLHAHQDQADV-VVMEASSHALDQGRVAGIPFQDAGWTNFTQDHLDYHRDEASYFAAK 230 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCA 284 L + + P +Y S+ V R G + V + I K A Sbjct: 231 AHLLDLIRPG---GRLYC---TSRAVADRLAALGPTPVPVEVLEPARLPPEAIAAKPFLA 284 Query: 285 I-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + HN+ ++V +A + A+ D +H L V Sbjct: 285 LAHNRANYALAVA--------------------LAERVLDAMPTDE--TRQHWRHLQPVD 322 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402 GRF+ +R I +D+AHT ++L+ IL IR R++ +FGCGGDRD+ KRP+M Sbjct: 323 GRFDCRVHGNRA--IVIDFAHTPDALDTILGAIREGFPDARVVTLFGCGGDRDRSKRPLM 380 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEML--- 456 G +D IVT DNPR E PE+I +I+ G P + +R EAI + L Sbjct: 381 GAAVARHSDAIIVTSDNPRHEPPERIIDDILTGFPEDQDYSVVVDRAEAIARLFDQLAAR 440 Query: 457 --NKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ V ++AGKGHE +I +G K D Sbjct: 441 PDDEPWVALIAGKGHER-YIDRDGHKTPYSD 470 >gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nautilia profundicola AmH] gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Nautilia profundicola AmH] Length = 410 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 56/366 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIY--L 170 + +TGT+GK++ A + + Q++G S +G T + + LTTP PI+ + Sbjct: 58 IGITGTNGKTTTAFVLGHLLQQAGYS---VGIQGTEGFYLNGEKIEAKTLTTP-PIFTTI 113 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 +A+ Y + +E SSH + Q R++GI+ A T+ +DH+DYH+T + Y K Sbjct: 114 KRAVKYEPDFYI----MEVSSHAIVQQRIEGIEFTAKILTSFSQDHLDYHKTMEEYKRVK 169 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 F + K ++ +++ N C+V S GY+ N Sbjct: 170 ESFFRDETVK----------VFNGKLL--VKNEKCKVKSGGYE------------FNLNC 205 Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + V K P+ GEF N AL A L +S+L + VPGR E Sbjct: 206 KNLYVLEKPIVDDIPMAGEFNKMNFSLALKTASLLT----NSSLSTFNFSLFEGVPGRME 261 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V S+ + +D+AHT + +E +L + G+ IVVFG GGDRD+ KR +MG++A Sbjct: 262 IV---SKKPLVIIDFAHTPDGMEKVLSAVE----GKKIVVFGAGGDRDKDKRHLMGEVAD 314 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQD-VLVV 464 A+ I+T+DNPR ED +I EI GI K NR +AI+ A+++ K++ L++ Sbjct: 315 KYAEYIIITEDNPRCEDSNEICKEIAKGIKSIPYKIISNRKDAIKEAVDIAKKKNYTLML 374 Query: 465 AGKGHE 470 GKG E Sbjct: 375 LGKGDE 380 >gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F32] Length = 447 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 115/382 (30%), Positives = 187/382 (48%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 GDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK++ IH+ PL G + +YN L G+ + + ++ L Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG +A A I+T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGAMASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL++ GKG E I Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423 >gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus salivarius SK126] Length = 481 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 135/502 (26%), Positives = 240/502 (47%), Gaps = 54/502 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +F ++I+Q + + W E + +S DSR + +F A G F P+ + + Sbjct: 16 NFRDIIDQDNYY-YSWTEVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVK 68 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 A +S + +D+ I P ++V + ++ +SL A Y ++P++ +LA TGT GK Sbjct: 69 A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F I +++ + +T+ +F + + LTTP + L + ++ + G+TH Sbjct: 123 TTAAYFAFNILKQNHKPAMLSTMNTTLDGKNFFK-SILTTPESLDLFRMMAEAVANGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H T + YF K LL + S Sbjct: 182 LIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLENS 236 Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +I D ++EV + H+ + GK A+ + + G Sbjct: 237 RVVIVNSGMDHFDFIAEEVADKEHD---------FYGK----NSDNAVKHGSGFSFKASG 283 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K D+D L G+F NA+ A C+ +G + + E + + V PGR E V T + Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLACLRLGANLQDIKEGIAQTSV-PGRME-VLTQTN 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G + +VDYAH +SL+ +L+ + + G I ++ G G++ + +R G + D+ I Sbjct: 340 GAKTFVDYAHNGDSLDKLLQVVTSHQDGHISLILGAPGNKGESRRKDFGHVLNTYPDVDI 399 Query: 415 V-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471 + T D+P EDP I EI I + +R +AI+TA+ E ++ +D +V+AGKG + Sbjct: 400 ILTADDPNKEDPLAICQEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGADA 459 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 IV + D ++ ++ L Sbjct: 460 FQIVNGKRDNYAGDIEVAKKYL 481 >gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128] gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Helicobacter pylori B8] gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128] gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Helicobacter pylori B8] Length = 447 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 189/385 (49%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHESIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ +H+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG +A A ++T DNPRSE+ E I +I+ GI +EK +R +AI Sbjct: 340 RDKTKRPEMGAVASYYAHKIVLTSDNPRSENEEDIIKDILKGISNSSKVVVEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 +A+E L +VL++ GKG E I Sbjct: 399 LSALENLKDDEVLLILGKGDENTQI 423 >gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori PeCan4] gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori PeCan4] Length = 447 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 190/385 (49%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLALEEIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 SLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E + I Sbjct: 399 LNALENLKDDEVLLILGKGDENIQI 423 >gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus infantis ATCC 700779] Length = 481 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 142/494 (28%), Positives = 228/494 (46%), Gaps = 51/494 (10%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + + DSR + +F V F+ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNFNDVTFDSICYDSRKAKDNSLF--FVKGAAFKKEFLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI G V QD+ I P++VV++ +K +SL A YG E + LA Sbjct: 66 AIEHGLSWYVAE-----QDYEVDI----PVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMAQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 G TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 176 DNGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL K S A++ D V+K + F + I N + + S Sbjct: 231 LLMKNSRAVVINSDMDYFSVLKEQVE--------NQEHDFYGSQSDNQIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLVGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIATTRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLDQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R +AI+ A+ + +++ D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKK 481 G + I+ NG K+ Sbjct: 456 GADCYQII-NGIKE 468 >gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. equi 4047] gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. equi 4047] Length = 481 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 136/506 (26%), Positives = 234/506 (46%), Gaps = 62/506 (12%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGA 68 +F E+++Q + + + + +S DSR +F A K D F+ QAIA+G Sbjct: 16 NFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFAKGSAFKAD---FLRQAIAKGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 V Y + P+++V+N + +SL A Y +P+N +LA TGT G Sbjct: 72 RLYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFY-DYPQNKLKLLAFTGTKG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ A F + + S + +T+ F + ++LTTP + L ++ + G+T Sbjct: 122 KTTAAYFAYHMLKESHKPALLSTMNTTLDGQHFFK-SQLTTPESLDLFAMMAQCVANGMT 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241 H+ +E SS R+ G+ G F N+ DHI H + + YF K LL + Sbjct: 181 HLVMEVSSQAYLVGRIYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMEN 235 Query: 242 SPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISV 295 S A++ + +++V + H+ + K C + +Q + Sbjct: 236 SRAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQA 281 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 GK D+ L G F NA+ A C+ +G + + + K +V PGR E V T + Sbjct: 282 AGKVAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRQGIAKTNV-PGRME-VLTMTN 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 +++VDYAH +SLE +L + G+I ++ G G++ + +R G++ ++ I Sbjct: 340 QAKVFVDYAHNGDSLEKLLSVVEEYQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRI 399 Query: 415 V-TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGK 467 + T D+P EDP+ I E I +I + +R EAI+T +E N+QD L++AGK Sbjct: 400 ILTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + IV + + D I + L Sbjct: 456 GADAYQIVKGQKTAYAGDLAIAKSYL 481 >gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Buchnera aphidicola] Length = 362 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 163/331 (49%), Gaps = 15/331 (4%) Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 D + TTP IY+ L + V++E SSHGL Q+R+ I G TN+ +DH+ Sbjct: 19 HDTKNTTPEAIYIQSFLYMAVEKKTKLVTMEVSSHGLVQNRVKEIPFHIGILTNISQDHL 78 Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------ 271 D+H + Y +AK F + K I+ A+D + ++R N +++ Sbjct: 79 DFHGNMENYKSAKWSFFSK--HKIKKVILNANDKCGQIWLRRLFNVYTIAVTIKDSTQKK 136 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 Y K+I+ + N +T + L G+F N L++ + +G Sbjct: 137 YATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAINLLLSLACLLELGYKIYD 196 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390 ++ K+ + GR E V N++ I +DYAHT ++L+ L +IR I +FGC Sbjct: 197 LINTSYKIQPINGRMETVFHNNKLVFI-IDYAHTPDALKKALNSIRLHYNQSYIWCIFGC 255 Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRI 446 GG+RD+ KRP+MG IA +A+ I+T+DNPR+E E I +I++G FI NR Sbjct: 256 GGNRDKKKRPLMGSIAEKIANKVIITNDNPRNEKEENIINDILNGCKNPKKIFIIP-NRK 314 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +AI A ++ +AGKGHE I+ N Sbjct: 315 QAISYAFHQSQDDHIIFLAGKGHEDKQIIQN 345 >gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 479 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 132/483 (27%), Positives = 231/483 (47%), Gaps = 39/483 (8%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+F E+I S + + ++S DSR + +F N + +L A+ QG Sbjct: 15 KNFREVIADDSYY-YHYTGLNFAKLSYDSRDVDDQTLFFVKGANFKAEYL--QSALEQGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 A + Y + + P ++V++ + +S+ A Y +N+ LA TGT GK Sbjct: 72 PAYISEVDYEV---------DIPAIIVNDIKHAMSIIAMAFYDNPQDNLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F I ++S ++ +T+ +F + ++LTTP + L K ++ S G+TH Sbjct: 123 TTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFK-SQLTTPESLDLFKMMAECVSNGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H T + YF K L E Sbjct: 182 LIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLME----NSR 237 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFD 301 II +D Y K + ++ N + F I + Q T V GK Sbjct: 238 AVIINSDMDYFKILKEQVKNQ---------EHDFYGQASDNHILDSQAFTFKVTGKLAGS 288 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + L G F NAL A C+ +G S + + + + VPGR E V ++ G +++VD Sbjct: 289 YKTLLIGRFNQDNALAAGLACLRLGASSDDIRKGIAET-TVPGRME-VLSHPCGAKVFVD 346 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNP 420 YAH +SLE ++ + G+II++ G G++ + +R K+ + +++++ T D+P Sbjct: 347 YAHNGDSLEKLVSVVEEHQKGQIILIIGSTGNKGESRRADFAKVINNHPNLSVILTADDP 406 Query: 421 RSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNG 478 EDP+ I EI + + + +R +AI+ +++ K+ D L++AGKG + I+ NG Sbjct: 407 NFEDPQTISEEIASYVSRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGADAYQII-NG 465 Query: 479 EKK 481 +K+ Sbjct: 466 KKR 468 >gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP11-BS70] gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae MLV-016] gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae AP200] Length = 481 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 143/510 (28%), Positives = 235/510 (46%), Gaps = 58/510 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K L E Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234 Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K II +D D +S ++V + H+ Y +F + I N + + Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278 Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346 S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391 Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463 +I + +T D+P EDP I EI + I +EK +R EAI+ A+ + N + D ++ Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVI 451 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKG + I+ ++ D + L Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481 >gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27] gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27] Length = 447 Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 184/382 (48%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ VTGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGVTGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +AK Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK+V +H+ PL G + +YN L G+ + + ++ L Sbjct: 246 NLKEVALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEVVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL++ GKG E I Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423 >gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella cibaria KACC 11862] Length = 508 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 123/446 (27%), Positives = 205/446 (45%), Gaps = 57/446 (12%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ AIA+G +AIV +++ T ++ P VVD+ +S+ + Y +P+N L Sbjct: 54 YLTDAIAKGVKAIVAPTSF-------THDTDLPTWVVDDVPAAMSVLSMAFY-DYPQNKL 105 Query: 119 A---VTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 A +TGT GK+S ++ + + LSS T F LTTP + L Sbjct: 106 ALIGITGTKGKTSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDL 165 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFN 228 + ++ + G+TH+ +E SS R+ G++ G F N+ DH+ + H T + Y Sbjct: 166 FRWMAEAVANGMTHMVMEVSSQAYKMERVYGLRFNVGVFLNISPDHVGENEHPTFEDYLE 225 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---------------------V 267 KM LF+ I+ AD + E+++ A A R Sbjct: 226 HKMMLFDH----SEQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDT 281 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + QG +++ +Q + + G D+ +PG+F NA+ A +G Sbjct: 282 VEADLQGSTFAVREA----GQQAARLGIAG---DYHLDMPGDFNQGNAVAAMIATRLVGA 334 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386 D+ + E LE + +PGR + + T + G IYVDYAH S+ +L +RT T ++ + Sbjct: 335 DTDAMHEGLEVVK-IPGRMQVLTTQNH-GTIYVDYAHNYASIAALLNFVRTNETVEKLTI 392 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEK 442 V G G++ +RP +G+ + AD+ +T D+P+ EDP I EI I + Sbjct: 393 VVGAPGNKGVSRRPGIGQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINRE 452 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468 +R AI AI+ DV+V+A KG Sbjct: 453 MDRTIAITEAIKAAGPNDVVVLAAKG 478 >gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Sat464] Length = 447 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 191/385 (49%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKFIH- 278 F++ K E+ A+ +A++ + K+AH N L S+ YQ + Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRNP 245 Query: 279 -LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 LK++ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 DLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E+ I Sbjct: 399 LNALENLKDDEVLLILGKGDESTQI 423 >gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae 70585] gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae 70585] Length = 481 Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120 AI QG V Y + P+++V++ +K +SL A YG E ILA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ +DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISQDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQNHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F N++ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENSVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae TIGR4] gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae TIGR4] gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae TIGR4] Length = 481 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 143/510 (28%), Positives = 234/510 (45%), Gaps = 58/510 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K L E Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234 Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 K II +D D +S ++V + H+ Y +F + I N + + Sbjct: 235 ---KSRAVIINSDMDHFSVLKEQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278 Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346 S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391 Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D ++ Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVI 451 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKG + I+ ++ D + L Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481 >gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPAG1] gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1] Length = 447 Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 49/381 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK++ IH+ PL G + +YN L G+ + + ++ L Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIVHSKPL---VIVDFAHTTDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453 KRP MG IA A ++T DNPRSE+ E I +I+ GI I + +R +AI A+ Sbjct: 343 TKRPKMGAIASCYAHQIVLTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNAL 402 Query: 454 EMLNKQDVLVVAGKGHETVHI 474 E L +VL++ GKG E I Sbjct: 403 ENLKDDEVLLILGKGDENTQI 423 >gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Gambia94/24] Length = 447 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 55/384 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIAQKRIAGLDFALKILTNITSDHLDFHKSLENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK+ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAIL 399 Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 400 NALENLKDDEVLLILGKGDENTQI 423 >gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP3-BS71] gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae OXC141] Length = 481 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLCLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy] Length = 493 Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 209/458 (45%), Gaps = 35/458 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S S+ A +F A G + DG L+I +AI GA I+ S + A ++ + Sbjct: 24 IETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEHGAVCIISDQNLSNLNLPAKVQWH 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V +L S L + I+ V+GT GKS+ ++ QI + +G+ + Sbjct: 84 Q----VHKPHTAFALMCSALNDNSQDKLGIIGVSGTDGKSTTCDYLYQILEANGVKT--- 136 Query: 148 GPTSTIS----SFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRL 199 G +T+S S D+ R +TP P L L V V +E +SH L RL Sbjct: 137 GLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKVQKVILECTSHALSDTFDRL 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI A T + +H+++H + + Y AK+ L L K+ + + D E Sbjct: 197 AGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSL--KDGGLFVTSTDNAKLEAFTA 254 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + + L +G K + L+ Q V + + + LP NAL+A Sbjct: 255 ELRSTTKALILG---KDVMLR--IEFMGYQGVVVDILDQRIQTSLLLPS--LATNALLAT 307 Query: 320 GLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 C + +GID +L ++ L V GR + + N+ G R +D+AHT+++ + I Sbjct: 308 -FCASHLLGIDVTALLVLIKSLKPVKGRMQQI-ENTLGVRTIIDFAHTADAYDGIFFFAK 365 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEI 432 RT G II VFGC G+RD KR MGKIA I+T+++PR E ++I R + Sbjct: 366 RTCEGGDIIAVFGCAGERDTSKRSPMGKIANKYCSTIILTEEDPRREGNQQIFSDLRFHM 425 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + E +R EAIR A+ + D L+ GKGHE Sbjct: 426 NNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGKGHE 463 >gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori SouthAfrica7] Length = 447 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 184/384 (47%), Gaps = 55/384 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IIGITGTNGKTTTASLMYSLLLDLNKKAALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLECEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHKSLENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 ++K+ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NVKETALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + VD+AHT++ ++ + ++ + S +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHPKPL---VVVDFAHTTDGMQQVFESFK---SQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIR 450 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI Sbjct: 340 RDKTKRPKMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDLSKVITEKDRKKAIL 399 Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E + I Sbjct: 400 NALENLKDDEVLLILGKGDENIQI 423 >gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 908] gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 2018] gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pylori 2017] Length = 447 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 187/384 (48%), Gaps = 55/384 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +AK Sbjct: 126 GDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKVLTNITSDHLDFHQNIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 ++K+ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NVKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + +N + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFENFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIR 450 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAYKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAIL 399 Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E + I Sbjct: 400 NALENLKGDEVLLILGKGDENIQI 423 >gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Cuz20] Length = 447 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 188/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ ++ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLALEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E+ I Sbjct: 399 LNALENLKDDEVLLILGKGDESTQI 423 >gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae JJA] gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae ATCC 700669] gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae JJA] Length = 481 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVKDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|58699992|ref|ZP_00374557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533489|gb|EAL57923.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 218 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 126/206 (61%), Gaps = 12/206 (5%) Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 HN Q +T+ ++ + ++ FP+ G+FQ YN L A G+ G++ + +EKL PGR Sbjct: 18 HNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC--VEKLVSPPGR 72 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V + +VDYAHT ++L+ L +++ + +II+VFGCGG+RDQ KR MGKI Sbjct: 73 MEKVKPFA-----FVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKI 127 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV 464 A AD I+TDDN R EDP KIR +I+ P +E G R EAI +++ N+ +L+V Sbjct: 128 AQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLV 187 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIR 490 AGKG+E I+ N + S D ++I+ Sbjct: 188 AGKGNEKFQIIGNQTFEFS-DVEVIK 212 >gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP19-BS75] gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CGSP14] gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae INV200] gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS455] gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS292] gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP-BS293] gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS458] gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS457] gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae BS397] gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA41301] Length = 481 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM 15897] Length = 492 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 129/458 (28%), Positives = 206/458 (44%), Gaps = 31/458 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI + SDSR+++ IF I G DGH ++ AI QGA+ IV S + + + Sbjct: 15 KIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLR-RYYQGIVYV 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILA---VTGTSGKSSVASFVQQICQRS----- 140 P V+D + LF HP + VTGTSGK+ VA V ++ R Sbjct: 74 QVPD-VLDELNRVADLFYD-----HPSYKMTGIGVTGTSGKTVVARVVARLLGRYLKMGY 127 Query: 141 -GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + G T + TTP PI L + + + V ++E SSHGL R+ Sbjct: 128 VGNNGIEYGATMMQMTG------TTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRV 181 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 D + FTN +H+D+H T + +LF LL + AI+ AD+ + Sbjct: 182 DSVNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLF-RLLQEGGYAILNADEVRFNHFLSM 240 Query: 260 AH---NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + ++LS G K I + + + I ++ + F P+ F + N Sbjct: 241 NYKDLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNT 300 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A+ + ++ ++ + V GR E V + I VDY +++ E + K Sbjct: 301 LAILTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPV-KQPFHIIVDYCQHAHNFEEVFKF 359 Query: 376 IRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 + + +G +I VFG G +D KR +G +A D I+T+ + R +D E I +I Sbjct: 360 VYGVKGNGHLIAVFGAPGRKDIHKRSKIGALANKYCDYVILTEQDERDDDIEGICEQIQE 419 Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I P + NR AI+ AI+ DV+++ GKGHE Sbjct: 420 QIVDPISVIITNRRFAIQQAIDAACAGDVILILGKGHE 457 >gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 52] Length = 447 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 185/382 (48%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYRDAKN 185 Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ K E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 +LK++ IH+ PL G + +YN L G+ + + + L Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETIAPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL++ GKG E I Sbjct: 402 LENLKDDEVLLILGKGDENTQI 423 >gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus uberis 0140J] gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus uberis 0140J] Length = 482 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 142/511 (27%), Positives = 236/511 (46%), Gaps = 54/511 (10%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 K +L+ KD F E+I+Q + + ++S DSR + A +F A K D Sbjct: 6 KTIELLKKDHNFREVIHQEHYY-FNYSGLSFQKLSYDSREVDADTLFFAKGAQFKVD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI QG +A V Y L + P ++V + +K +S+ A YG E + Sbjct: 62 YLKKAIDQGLQAYVSEIDYQL---------SIPAIIVSDIKKAMSIIAMTFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F I Q + F T+ ++LTTP + L K ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHILKQNYKPAMFSTMNTTLDGQTFFKSQLTTPESLDLFKMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 S G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 SCVSNGMTHIIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ + +++V + H + G Q + A+ Sbjct: 230 --RLLMENSRAVVINSGMDHFNILAEQVADKDH------VFYGDQSE-------NALTES 274 Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q SV G+ +D L G F NA+ A C +G + E + + VPGR Sbjct: 275 QAFAFSVNGQIAGHYDI--QLIGRFNQENAIAAGLACQKLGASHLDIHEGIAQT-TVPGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V ++ G +++VDYAH +SLE ++ + T G I ++ G G++ + +R G++ Sbjct: 332 MEVV-SHPNGAKVFVDYAHNGDSLEKLVSVVETHQKGLISLIIGSTGNKGESRRADFGRV 390 Query: 406 ALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVL 462 + ++ I+T D+P EDPE I EI + + +R +AI ++ + D L Sbjct: 391 INNHPNLNVILTADDPNFEDPETICQEIASHVNRHVSIIVDRQDAIIEGLKYCHTSGDAL 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + IV +++ + D I ++ L Sbjct: 451 IIAGKGADAYQIVNGKKEEYAGDLAIAKKAL 481 >gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Lithuania75] Length = 447 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 189/385 (49%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L G + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y + K Sbjct: 126 SDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDIKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPFISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSQPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG IA A ++T DNPRSE+ E I +I+ GI +EK +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHKIVLTSDNPRSENEEDIIKDILKGINNSSKVVVEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1087-00] Length = 481 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLVWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP9-BS68] gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC1873-00] gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae SP195] gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA17570] gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47368] Length = 481 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori B38] gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori B38] Length = 447 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 119/401 (29%), Positives = 197/401 (49%), Gaps = 56/401 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDTQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPFISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ +H+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKEIALMHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAIL 399 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 A+E L +VL++ GKG E + I + S D +I+R+ Sbjct: 400 NALENLKDDEVLLILGKGDENIQIFKDKTIFFS-DQEIVRD 439 >gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F30] Length = 447 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLALETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A ++T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pylori 83] Length = 447 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 NDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG+IA A ++T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori v225d] Length = 447 Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG+IA A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEIASYYAHKIILTSDNPRSENEEYIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sulfurovum sp. NBC37-1] gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase [Sulfurovum sp. NBC37-1] Length = 432 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 127/446 (28%), Positives = 200/446 (44%), Gaps = 60/446 (13%) Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA-----------VTGTSGKS 127 L D + + T L+ R + S+ P+ ++A VTGT+GK+ Sbjct: 13 LTDNTMLLDEETLFLLTSQNRPYYEKLESKPASITPDELIAFWGLDAMKVVGVTGTNGKT 72 Query: 128 SVA----SFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLS 178 +V SF+ + ++ L T FA++ R +TTPS + + Sbjct: 73 TVTAAIYSFLLDLDKKPALQG-------TRGLFAEEKRIEEKSMTTPSILETLHNMKQTM 125 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G + +E SSH +DQ R++GI TN+ DH+DYH T + Y K F + Sbjct: 126 DMGCNYFIMEVSSHAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEEYRRVKSLFFAD-- 183 Query: 239 PKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ ++ DD Y+ K A++ G + F L + A I Sbjct: 184 --DTMKLLNKDDINNITYNP---KNAYSYGVDEPATYKVQAFSLLHGITA-------GIK 231 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAG---LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++ F P+ G F ++N + A G L I + + +E V GR E V Sbjct: 232 YMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQE--ICDVVENFAGVAGRMEVV-- 287 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 SR + VD+AHT + + +L++++ I VVFG GG+RD+ KRP+MG A A+ Sbjct: 288 -SRDPLVIVDFAHTHDGIHAVLESMK---DRDISVVFGAGGNRDKEKRPLMGAAAGRYAN 343 Query: 412 IAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 VT DNPR E PE I +I +HG +R AI+ A+E L +VL++ GKG Sbjct: 344 KIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEVLLILGKG 403 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E + G K D +++RE+L Sbjct: 404 DEDYQEI-KGVKHHFDDREVVRELLA 428 >gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA47901] Length = 481 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Shi470] gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori Shi470] Length = 447 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ ++ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VIVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 26695] gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695] Length = 447 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 111/381 (29%), Positives = 184/381 (48%), Gaps = 49/381 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F + R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINNERIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+HQ+ + Y +AK Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPVNAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 + K++ +H+ PL G + +YN L G+ + + ++ L Sbjct: 246 NFKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETIVPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E V + + VD+AHT + ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIVHSKPL---VVVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAI 453 KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI A+ Sbjct: 343 TKRPEMGAIASYYAHKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNAL 402 Query: 454 EMLNKQDVLVVAGKGHETVHI 474 E L +VL++ GKG E + I Sbjct: 403 ENLKDDEVLLILGKGDENIQI 423 >gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC3059-06] Length = 481 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQAGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP6-BS73] Length = 481 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 228/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + Y + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFRFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori 35A] Length = 447 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A ++T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. zooepidemicus] gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus equi subsp. zooepidemicus] Length = 481 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 135/505 (26%), Positives = 232/505 (45%), Gaps = 60/505 (11%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGA 68 +F E+++Q + + + + +S DSR +F A K D F+ QAIA+G Sbjct: 16 NFREVLDQ-DGYHFNYSGLQFDSLSYDSRQADEQTLFFAKGATFKAD---FLKQAIAKGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126 + V Y + P+++V+N + +SL A Y +H +LA TGT GK Sbjct: 72 KIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F + + S + +T+ SF + ++LTTP + L ++ + G+TH Sbjct: 123 TTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFK-SQLTTPESLDLFAMMAQCVANGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H + + YF K LL + S Sbjct: 182 LVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENS 236 Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVE 296 A++ + +++V + H+ + K C + +Q + Sbjct: 237 RAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQAA 282 Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 GK D+ L G F NA+ A C+ +G + + + K V PGR E V T + Sbjct: 283 GKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLKDIRQGIAKTRV-PGRME-VLTMTNQ 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 ++ VDYAH +SLE +L + G+I ++ G G++ + +R G++ ++ I+ Sbjct: 341 AKVVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVHII 400 Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGKG 468 T D+P EDP+ I E I +I + +R EAI+T +E +K+D L++AGKG Sbjct: 401 LTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKTGMERCQSKEDALIIAGKG 456 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 + IV + + D I + L Sbjct: 457 ADAYQIVKGQKAAYAGDLAIAKSYL 481 >gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori J99] gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99] Length = 447 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 186/384 (48%), Gaps = 55/384 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFIDDKHIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+HQ + Y +AK Sbjct: 126 SDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A + + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHDLRDP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK+ IH+ PL G + +YN L AG+ + + + + L LE Sbjct: 246 NLKETALIHS-----------------PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E V + + VD+AHT++ ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEIVHSKPL---VVVDFAHTTDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIR 450 RD+ KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI Sbjct: 340 RDKTKRPKMGAIASCYAHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAIL 399 Query: 451 TAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E + I Sbjct: 400 NALENLKDDEVLLILGKGDENIQI 423 >gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans DSM 9485] Length = 510 Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 212/465 (45%), Gaps = 36/465 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR + G +FVAI G DGH FIPQAIA GA A+VV Y + + + Sbjct: 25 ISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGAAAVVVDQRY----WHGAVSAE 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV ++R L+ A+ Y ++P L G +G ++ Q + +G Sbjct: 81 VPVVVVADSRVALAPLAAAFY-EYPGQQLTTIGITGTKGKSTTTDLTAQLLAAAGRTVGM 139 Query: 150 TSTIS------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201 ST+ + D R +TP + L + G +EA+SH L RL G Sbjct: 140 ISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGCDTAVIEATSHALSPRWGRLVG 199 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 N+G +H+D+H T + Y K +LF L + P AI+ ADD + + Sbjct: 200 CAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERHGPTWAIVNADDPHHGTFLAA 259 Query: 260 AHNAGCRV-----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + R+ QG+ +H + + I + + PLPG F N Sbjct: 260 VPSQTMRLRYALHAPADVQGQIVHSGPASS-----HMRIHSPWGEIEVNVPLPGRFNASN 314 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 L A + + G+ + + GR + + + VDYAH +S E I Sbjct: 315 VLAALTVALTQGVPLERAAAAVAHVRAPRGRMVSINVG-QPFTVIVDYAHNPDSFEQIFT 373 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI------ 428 +R +GRII VFG G+RD KR I G+IA + D+ ++TD++PR ED E I Sbjct: 374 MLRPQVTGRIIAVFGSAGERDVSKRAIQGEIAGRMCDLLVLTDEDPRGEDREAIIAQIAA 433 Query: 429 ---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 RA G G++ NR +AIRTAI D++++ GKGHE Sbjct: 434 GAERAGKRPG-SGYLCIPNRAQAIRTAIAAARPGDMVLLLGKGHE 477 >gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC 43879] gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC 43879] Length = 451 Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 123/419 (29%), Positives = 187/419 (44%), Gaps = 65/419 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 ++ +TGT+GK++ A+ + + G +++ T F D R LTTPS + L Sbjct: 53 LIGITGTNGKTTTAAAIYSVLLDMG---YKVALLGTRGMFINDTRKKPKGLTTPSLLELY 109 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 + + ++ G +E SSH + Q R+ G++ TN+ DH+DYH+T + Y KM Sbjct: 110 EDIDMAANMGCDFFVMEVSSHAIKQERIYGLEFCLKILTNITSDHLDYHKTWEDYAKTKM 169 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKV 282 + + E II DD + H V S G+ G F + Sbjct: 170 QFLQ---SGECIKIINLDDKSGASMRFYPHVLTYGVESKGHLFVNAYGLQDGIFAQMSLR 226 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI--AIGIDSALVLEHLEKLH 340 + Q+ I L G F +YN L+AA L I D + ++ Sbjct: 227 LQKDSMQECVIES---------SLFGLFNLYN-LMAATLAIHAITKQDIQSICACVKNFG 276 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 V GR E V S+ + +D+AHT++ ++ + ++ +T I VVFG GGDRD+ KR Sbjct: 277 GVSGRMEIV---SKTPLVIIDFAHTTDGMKQVFESFKT---KNISVVFGAGGDRDKSKRE 330 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----------------IEKGN 444 MG A A +T+DNPRSE+P I EI G+ I+ N Sbjct: 331 KMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNETDIEIKENTSYEIKSSN 390 Query: 445 ----------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 R EAI+ A+ L K VL+V GKG E+V I + E S D + ++EIL Sbjct: 391 AAITMQIILDRKEAIKLALRELQKDWVLLVLGKGDESVQIFRDNEIHFS-DKECVQEIL 448 >gi|58700141|ref|ZP_00374655.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533343|gb|EAL57828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 213 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 130/218 (59%), Gaps = 12/218 (5%) Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 G I L + + N Q +T+ ++ + ++ FP+ G+FQ YN L A G+ G++ + Sbjct: 1 GSDITLLEQTSTPNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGIS---GLNYREIC 57 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 +EKL PGR E V + +VDYAHT ++L+ L +++ + +II+VFGCGG+ Sbjct: 58 --VEKLVSPPGRMEKVKPFA-----FVDYAHTPSALKQALLSLKWHINKKIILVFGCGGN 110 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453 RDQ KR MGKIA AD I+TDDN R EDP KIR +I+ P +E G R EAI + Sbjct: 111 RDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGV 170 Query: 454 EM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 ++ N+ +L+VAGKG+E I+ N + S D ++I+ Sbjct: 171 DIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 207 >gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella paramesenteroides ATCC 33313] gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella paramesenteroides ATCC 33313] Length = 518 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 198/454 (43%), Gaps = 73/454 (16%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ AI +G AI+ +++ + P V D+ +S+ A Y ++P+N L Sbjct: 64 YLTDAIEKGVTAIIAPASFKHA-------TKLPTWVADDVPAAMSIIAMAFY-QYPQNNL 115 Query: 119 A---VTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 A +TGT GK+S A +I + + LSS T + + LTTP + L Sbjct: 116 ALIGITGTKGKTSTAYMAYEILRAYTHDKVALSSTLQVITGSEPQYHYRAHLTTPESVDL 175 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFN 228 + + G+TH+ +E SS R+ G+ G F N+ DHI + H T + Y Sbjct: 176 FRWMREAVDNGMTHMVMEVSSQAFKMRRVYGLHFNVGIFLNISPDHIGENEHPTFEDYLQ 235 Query: 229 AKMRLFE---------------------ELLPKESPAIIYAD--------DAYSKEVMKR 259 KM LF+ EL+ +Y D Y + Sbjct: 236 HKMMLFDHSEQIVLNVDSDHFGELIAHAELMVHRDGIWLYGQEDVDSPKADVYFEATDAN 295 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 H + +V VG Q + +H+K ++ +PG+F NAL A Sbjct: 296 LHGSVFKVREVGQQAEHLHIKG-------------------EYTLDMPGDFNQSNALAAM 336 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +G D+ + E LE + V PGR + + T + G IYVDYAH S+ +L+ +R Sbjct: 337 IATRLVGADAPAMAEGLETVKV-PGRMQVLNT-QKHGTIYVDYAHNYASIAALLQFVRQN 394 Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 S ++ +V G G++ +RP +GK + AD+ +T D+P+ EDP KI EI I Sbjct: 395 ESVNQLAIVVGAPGNKGVSRRPGIGKAVSEGADVVYLTSDDPQYEDPAKIADEIQAAITN 454 Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + +R +AI AI DV+V+A KG Sbjct: 455 PKVTIYRELDRTKAIIAAILAAGPDDVVVLAAKG 488 >gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter mediatlanticus TB-2] gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter mediatlanticus TB-2] Length = 408 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 199/431 (46%), Gaps = 66/431 (15%) Query: 93 LVVDNTRK------FLSLFASRLYGKH------PENIL----------AVTGTSGKSSVA 130 L+ DNT+ FL F ++ Y + P+ +L +TGT+GK++ A Sbjct: 11 LITDNTKDLTTNKIFLKTFQNQKYATNITKFITPKELLDALKLKTKFIGMTGTNGKTTTA 70 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY-LAKALSYLSSQGVTHVSV 187 + + + G + G + ++ LTTP + +A Y V + Sbjct: 71 FVLSFLLKNLGFNVVTQGTEGLYFNLEKKENKTLTTPDIFTTIKRAYKYKPDFFV----M 126 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSH + Q+R++GI+ A T+ +DH+DYH++ Y K F++ ES +I Sbjct: 127 EVSSHAIAQNRIEGIRFDAKIMTSFSQDHLDYHKSIDEYKKVKESFFQD----ESVKVIN 182 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + N ++ +G Y K ++NK + V K P+ Sbjct: 183 GK--------LKMENGKYSIIEIGNYDFK---------VYNKN---LYVLEKPIVNDIPM 222 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLE-HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 GEF N +A + S +L L V GR E V S+ I VD+AHT Sbjct: 223 AGEFNKMNFSLALKTAEILTNSSFSILNSQLNNFKGVSGRMEIV---SKNPLIIVDFAHT 279 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 + +E +L +++ G IVVFG GG RD+ KR +MG++A A+ I+T+DNPR E+P Sbjct: 280 PDGIEKVLSSVK----GEKIVVFGAGGKRDKEKRELMGEVASKYAEFLIITNDNPRCEEP 335 Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 KI +I G IP I +R EAI+ AI++ +L V GKG E N ++K Sbjct: 336 MKIANDIAKGVSIPYEI-ILDRKEAIKKAIKLAKNGKILFVLGKGDEEFIEYCNKKEKFK 394 Query: 484 VDCDIIREILG 494 D ++I EILG Sbjct: 395 -DKNVILEILG 404 >gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M334] gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sp. M334] Length = 481 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 144/508 (28%), Positives = 227/508 (44%), Gaps = 54/508 (10%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 D++ KD F E+I+Q + + + + DSR + FV K++ F+ Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSHVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 AI+QG V Y + P ++V + +K +SL A YG E + LA Sbjct: 65 SAISQGLGWYVAEEDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 116 FTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 175 VQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK----- 229 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTIS 294 LL K S A+I D V+K V Q F + I N + + S Sbjct: 230 RLLMKNSRAVIINSDMDHFSVLKE---------QVADQDHDFYGSQSDNQIENSKAFSFS 280 Query: 295 VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEF 348 GK D+D L G F NA+ A C+ +G LE ++K VPGR E Sbjct: 281 ARGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 334 VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQ 393 Query: 409 LADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVA 465 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++A Sbjct: 394 HPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV ++ D + L Sbjct: 454 GKGADCYQIVQGKKEAYPGDAAVAENYL 481 >gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10] gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10] Length = 447 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPTNAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG++A A I+T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEVASYYAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LDALENLKDDEVLLILGKGDENTQI 423 >gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51] Length = 447 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 185/382 (48%), Gaps = 51/382 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHESIENYRDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 + K++ +H+ PL G + +YN L G+ + + ++ L Sbjct: 246 NFKEIALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTA 452 KRP MG++A A ++T DNPRSE+ E I +I+ GI IEK +R +AI A Sbjct: 343 TKRPKMGEVASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAILNA 401 Query: 453 IEMLNKQDVLVVAGKGHETVHI 474 +E L +VL+V GKG E I Sbjct: 402 LENLKDDEVLLVLGKGDENTQI 423 >gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus downei F0415] Length = 483 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 132/488 (27%), Positives = 227/488 (46%), Gaps = 47/488 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 + W + +S DSRH+ +F A V KE F+ A+ +G + Y Sbjct: 26 YAYNWSGVTFDHLSYDSRHVTPSSLFFAKGAVFKKE----FLQGAVEKGLAFYIAEKDYE 81 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQ 135 + P ++V++ ++ +SL A Y +P++ ILA TGT GK++ A F Sbjct: 82 V---------GIPAILVNDIKQAMSLIAMAFY-DNPQDKLKILAFTGTKGKTTAAYFAYN 131 Query: 136 ICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I ++S + +T+ +F + ++LTTP + L + ++ G +H+ +E SS Sbjct: 132 IFKQSQKPAMLSTMNTTLDGETFFK-SQLTTPESLDLFEMMAQAVENGRSHLIMEVSSQA 190 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ G F N+ DHI H T + YF K LL + S A++ Sbjct: 191 FLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVVNSGM 245 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPG 308 +++ +V S+ + F I N + + GK +D L G Sbjct: 246 DHFAILRD------QVASIPHD--FYGELSDNQIKNSRAFDFDLTGKLAGHYDI--QLIG 295 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NAL A C+ +G A + + + VPGR E V T + G +++VDYAH +S Sbjct: 296 DFNQENALAAGLACLRLGASPADIQRGIAET-TVPGRME-VLTQTNGAKVFVDYAHNGDS 353 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEK 427 L+ +L + SG+ I++ G G++ + +R G + D+ I++ D+P EDP+ Sbjct: 354 LKKLLSVVAQHQSGKNILILGAPGNKGESRRADFGAVINHHPDLEVILSADDPNKEDPQV 413 Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVTNGEKKMSVD 485 I EI I +E +R +AI+TA+++ QD +++AGKG + IV + D Sbjct: 414 ICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGADAFQIVDGKRASYAGD 473 Query: 486 CDIIREIL 493 I ++ L Sbjct: 474 LAIAKKYL 481 >gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter acinonychis str. Sheeba] gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba] Length = 447 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 112/381 (29%), Positives = 183/381 (48%), Gaps = 49/381 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ VTGT+GK++ AS + + + +G T F D R LTTP+ + L Sbjct: 69 IIGVTGTNGKTTTASLMYSLLLDLNKKAALLG---TRGFFINDKRIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 GDLEEAMRLECEYFIMEVSSHAIVQERIAGLNFALKILTNITSDHLDFHKSIENYRDAKN 185 Query: 232 RLFEELLPK-----ESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ K E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHL 336 ++K++ +H+ PL G + +YN L G+ + + + L Sbjct: 246 NVKEMALMHS-----------------PLLGRYNLYNILAGVLGVKLLTQLPLETITPLL 288 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 E + V GR E + + VD+AHT++ ++ + ++ + + +I +FG GGDRD+ Sbjct: 289 ENFYGVKGRLEIAHSKPL---VVVDFAHTTDGMQQVFESFK---AQKITALFGAGGDRDK 342 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAI 453 KRP MG IA A I+T DNPRSE+ E I +I+ GI I + +R +AI A+ Sbjct: 343 TKRPKMGAIASCYAHKIILTSDNPRSENEEDIIKDILKGINDPSKVIVEKDRKKAILNAL 402 Query: 454 EMLNKQDVLVVAGKGHETVHI 474 E L +VL++ GKG E I Sbjct: 403 ENLKDDEVLLILGKGDENTQI 423 >gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Slackia exigua ATCC 700122] Length = 505 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 138/490 (28%), Positives = 219/490 (44%), Gaps = 40/490 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP----QAIAQGAEAIVVSSAYSLQDF 82 +R + +S DSR + +F G F P A+ GA A + + S D Sbjct: 31 DRPVRGMSIDSRAVGPEALFAC------KGAAFKPAYLEDALNAGAAAYLCDES-SEPDL 83 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140 SA + LV D+ R ++ A YG+ + +I+ +TGT GKS+ + ++ I + Sbjct: 84 SAHAEGVSH-LVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTKGKSTTSFLLKSIFAAA 142 Query: 141 GLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G+ IG T I +F N TTP + L + + + G H+ +E SSH L Sbjct: 143 GMRPSIIGSIETDDGIDAFESHN--TTPEAVDLWRHVFNTAESGRKHLVMEVSSHALKYD 200 Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R G+ L F N+GRDHI H + + YF +K+R+F++ A++ D E Sbjct: 201 RTLGLMLDVACFLNIGRDHISPSEHPSFEDYFASKLRIFDQC----RTAVVNLDSDLVDE 256 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 V++ A A R+L+ G + V + ++ EG + G F Sbjct: 257 VLEHARRAE-RLLTFGVDRPEADYSARDVRPCRDGIAFDLACEGGARPMTLGMAGLFNAE 315 Query: 314 NALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NAL A + GI D A L H+ VPGR E V + + VDYAH S + Sbjct: 316 NALAAIAMARIAGIGFEDIASGLAHVR----VPGRMEVVRSAAGSTIALVDYAHNELSYK 371 Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 ++R + +++ VFG GD+ +R ++ ++A AD I T+++P EDP I Sbjct: 372 TFFTSVRKEHLAAKVVAVFGAPGDKAFERREVLPRVAAQFADYLIYTEEDPAHEDPRAIA 431 Query: 430 AEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVD 485 E+ P +R +AI A E+ + D V+ + KG ET + ++ D Sbjct: 432 EELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVCLLAKGDETRQHRGDSFPEVKSD 491 Query: 486 CDIIREILGL 495 I RE LG+ Sbjct: 492 LHIARECLGV 501 >gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 481 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 136/505 (26%), Positives = 230/505 (45%), Gaps = 60/505 (11%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGA 68 +F E+++Q + + + + +S DSR +F A K D F+ QAIA+G Sbjct: 16 NFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFAKGATFKAD---FLKQAIAKGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126 + V Y + P+++V+N + +SL A Y +H +LA TGT GK Sbjct: 72 KIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F + + S + +T+ SF + ++LTTP + L ++ + G+TH Sbjct: 123 TTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFK-SQLTTPESLDLFAMMAQCVANGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H + + YF K LL + S Sbjct: 182 LVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----RLLMENS 236 Query: 243 PAIIYAD-----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVE 296 A++ + +++V + H+ + K C + +Q + Sbjct: 237 RAVVVNSGMEHFNILAEQVADKPHD--------------FYGKGACNRLLQRQAFSFQAA 282 Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 GK D+ L G F NA+ A C+ +G + + K V PGR E V T + Sbjct: 283 GKLAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRLGIAKTRV-PGRME-VLTMTNQ 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +I VDYAH +SLE +L + G+I ++ G G++ + +R G++ ++ I+ Sbjct: 341 AKIVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRII 400 Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEML-NKQDVLVVAGKG 468 T D+P EDP+ I E I +I + +R EAI+ +E N+QD L++AGKG Sbjct: 401 LTADDPNFEDPQLISEE----IASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKG 456 Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493 + IV + + D I + L Sbjct: 457 ADAYQIVKGQKTAYAGDLAIAKSYL 481 >gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F57] Length = 447 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTALLG---TRGFFINDKQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG+IA A ++T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6- diaminopimelate ligase [Streptococcus mutans NN2025] Length = 483 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 134/485 (27%), Positives = 221/485 (45%), Gaps = 53/485 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + +S DSR I+A +F V F+ +AI G V Y + Sbjct: 34 EVAFHHISYDSRDIKASTLF--FVKGATFKKEFLEKAIESGLTFYVAEKDYQV------- 84 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P+++V+N + + L A Y + + LA TGT GK++ A F I + G Sbjct: 85 --GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAAYFAYHIL-KQGYRP 141 Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 I +T +F + ++LTTP + L K ++ ++ G+TH+ +E SS R+ G Sbjct: 142 AMISTMNTTLDGKTFFK-SKLTTPESLDLFKMMAQAAANGMTHLIMEVSSQAYLVGRVYG 200 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKE 255 + G F N+ DHI H T + YF K LL K S +I A KE Sbjct: 201 LTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKHSRYVIVNSQMNHFALVKE 255 Query: 256 -VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQ 311 V + H+ + GK+ + V N + + + GK +D L G F Sbjct: 256 QVADQPHD---------FYGKYSDNQIV----NSKAFSFDLTGKLAGHYD--IQLTGSFN 300 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA+ AA C+ +G + + + + VPGR E V G +++VDYAH +SLE Sbjct: 301 QENAVAAALACLQLGASQTDIQKGIVQT-TVPGRME-VLVQKNGAKVFVDYAHNRDSLEK 358 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRA 430 +L + G +I++ G G++ + +R G + ++ I+T D+P +EDP+ I Sbjct: 359 LLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNNEDPQLISQ 418 Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EI H I + +R +AI+ A+ + + D +++AGKG + IV + D ++ Sbjct: 419 EIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIVKGKRTAYAGDIEV 478 Query: 489 IREIL 493 R+ L Sbjct: 479 ARKYL 483 >gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori F16] Length = 447 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 57/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-----LTTPSPIYLA 171 I+ +TGT+GK++ AS + + + +G T F D + LTTP+ + L Sbjct: 69 IVGITGTNGKTTTASLMYSLLLDLNKKTAFLG---TRGFFINDKQIKEKGLTTPTLLELY 125 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L + +E SSH + Q R+ G+ TN+ DH+D+H++ + Y +AK Sbjct: 126 SDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDAKN 185 Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL------SVGYQGKF--I 277 F++ + E+ A+ +A++ + K+AH N L S+ YQ Sbjct: 186 SFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQDLRNP 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 +LK++ IH+ PL G + +YN L + + + + L LE Sbjct: 246 NLKEIALIHS-----------------PLLGRYNLYNILAG---VLGVKLLTQLPLEAIA 285 Query: 336 --LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 LE + V GR E + + + VD+AHT + ++ + ++ + + +I +FG GGD Sbjct: 286 PLLENFYGVKGRLEILHSKPL---VIVDFAHTIDGMQQVFESFK---NQKITALFGAGGD 339 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 RD+ KRP MG+IA A ++T DNPRSE+ E I +I+ GI IEK +R +AI Sbjct: 340 RDKTKRPKMGEIASYYAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEK-DRKKAI 398 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHI 474 A+E L +VL++ GKG E I Sbjct: 399 LNALENLKDDEVLLILGKGDENTQI 423 >gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus vestibularis F0396] gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus vestibularis F0396] Length = 481 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 131/502 (26%), Positives = 236/502 (47%), Gaps = 54/502 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +F ++I+Q + + W + +S DSR + +F A G F P+ + + Sbjct: 16 NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVQ 68 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 A +S + +D+ I P ++V + ++ +SL A Y ++P++ +LA TGT GK Sbjct: 69 A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F I ++S + +T+ +F + N LTTP + L + ++ G+TH Sbjct: 123 TTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSN-LTTPESLDLFRMMAEAVDNGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H T + YF K L E S Sbjct: 182 LIMEVSSQAYLTKRVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN-----S 236 Query: 243 PAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I ++EV + H+ + GK + + + +G Sbjct: 237 RAVIVNSGMNHFGFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAKG 283 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K D+D L G+F NA+ A C+ +G + + + + V PGR E + T + Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQTSV-PGRMEIL-TQAN 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +++VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + ++ + Sbjct: 340 GAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDV 399 Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471 ++ D+P EDP I EI I + +R EAI+TA+ E + +D +V+AGKG + Sbjct: 400 TLSADDPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADA 459 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 IV + D ++ ++ L Sbjct: 460 FQIVNGKRTDYAGDIEVAKKYL 481 >gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Subdoligranulum variabile DSM 15176] Length = 493 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 140/461 (30%), Positives = 218/461 (47%), Gaps = 33/461 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + DSR + G +FV + G DGH + +A A GA IV + Sbjct: 23 VQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAGAVGIVCERPIP------GLPEA 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P++ V ++R+ L+ A RLYG+ + + +TGT GK++ A V + +G I Sbjct: 77 LPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGKTTTAHLVAAVLTAAGRKVGLI 136 Query: 148 GPTSTISSFAQDNRL--TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G T+ + + L TTP L + L + G +E SS GL R+ GI+ Sbjct: 137 G-TNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTCVMEVSSLGLKMDRVTGIEYD 195 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAG 264 G FTNL DHI + A F A+ R ++ +L + I+ ADD ++ ++ + H Sbjct: 196 IGIFTNLSPDHIG--PGEHASF-AEYRAWKSVLFRRCRVGIVNADDPQTEAILTQ-HT-- 249 Query: 265 CRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALV 317 CRV++ G + +H + ++ EG ++ +PG F +YNAL Sbjct: 250 CRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPEGGSREYQLAMPGRFSIYNALA 309 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + + V L + VV GR E V ++ + +DYAH + E +L +R Sbjct: 310 AIAAAGILQLPDTAVQTGL-RTAVVEGRVEPVPIHA-PFTVVLDYAHNEAAAENLLTTLR 367 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436 R+IVVFGCGG R + +R MG+ LAD IVT+DN R E I A+I G+ Sbjct: 368 AYRPTRLIVVFGCGGGRSRVRRFGMGEACARLADFCIVTEDNSRGEPLADILADIRTGLR 427 Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 F+E +R +A+ A++M D++ V GKGHET Sbjct: 428 RGNPDTPFVEISDRRQALYDALDMARPGDIVAVIGKGHETT 468 >gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter felis ATCC 49179] gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase [Helicobacter felis ATCC 49179] Length = 442 Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 119/397 (29%), Positives = 185/397 (46%), Gaps = 55/397 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKAL 174 I+ +TGT+GK++ A+ + + Q G S +G AQ LTTPS + L + Sbjct: 61 IIGITGTNGKTTTAALIAHLLQALGHSCALLGTRGFFIHNAQVKPKGLTTPSLLELYSDI 120 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + ++G +E SSH + Q R+ G++ A TN+ DH+DYH + Y K Sbjct: 121 ARARAEGAKFFVMEVSSHAIAQERILGLEFAAKVHTNITSDHLDYHGDIETYRAIK---- 176 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L E I+ DD + + A+ C + HL V A + +++ Sbjct: 177 NQFLSDEGLKIVNLDDPHVRFNPTNAYGYACE--------RKTHLS-VNAYSLQPEISAH 227 Query: 295 VE-------------GKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 VE + + PL G ++N L+ A LC+ AL + LE L Sbjct: 228 VEFHADPRARRDPNSNAEMGIVHAPLMGLHNLHN-LLGALLCV-----RALTKQPLESLC 281 Query: 341 V-------VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 V GR E V N + VD+AHT++ I + + + +I VVFG GGD Sbjct: 282 SLLGDFPGVEGRMEVVHQNPL---VVVDFAHTADGFVQIFNSFK---AQKIKVVFGAGGD 335 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEA 448 RD+ KRP+MG++A A + +T DNPRSE+P I +I+ GI + + +R A Sbjct: 336 RDKSKRPLMGQVASTHALKSYITSDNPRSEEPLAIIEDILSGIASELRTRVVVEPDRKRA 395 Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 I A+ L +VL++ GKG E V I+ G+ + D Sbjct: 396 IELALSELQSDEVLLILGKGDECVQII--GQAHLPFD 430 >gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus vestibularis ATCC 49124] gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus vestibularis ATCC 49124] Length = 481 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 130/502 (25%), Positives = 237/502 (47%), Gaps = 54/502 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 +F ++I+Q + + W + +S DSR + +F A G F P+ + + Sbjct: 16 NFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA------KGAAFKPEFLENAVQ 68 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 A +S + +D+ I P ++V + ++ +SL A Y ++P++ +LA TGT GK Sbjct: 69 A-GLSFYVAEKDYQVGI----PAIIVSDIKQAMSLVAQAFY-QYPQDKLKLLAFTGTKGK 122 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ A F I ++S + +T+ +F + + LTTP + L + ++ + G+TH Sbjct: 123 TTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFK-STLTTPESLDLFRMMAEAVANGMTH 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS R+ G+ G F N+ DHI H T + YF K L E S Sbjct: 182 LIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLEN-----S 236 Query: 243 PAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 A+I ++EV + H+ + GK + + + +G Sbjct: 237 RAVIVNSGMNHFGFVAEEVADKDHD---------FYGK----DSENTVKHSSGFSFKAKG 283 Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K D+D L G+F NA+ A C+ +G + + + + V PGR E + T + Sbjct: 284 KLAGDYDI--QLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQTSV-PGRMEIL-TQAN 339 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +++VDYAH +SL+ +L+ + G+I ++ G G++ + +R G + ++ + Sbjct: 340 GAKVFVDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDV 399 Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGHET 471 ++ D+P EDP I EI I + +R EAI+TA+ E + +D +V+AGKG + Sbjct: 400 TLSADDPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADA 459 Query: 472 VHIVTNGEKKMSVDCDIIREIL 493 IV + D ++ ++ L Sbjct: 460 FQIVNGKRTDYAGDIEVAKKYL 481 >gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis SK564] gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus mitis SK564] Length = 481 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 140/507 (27%), Positives = 227/507 (44%), Gaps = 52/507 (10%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 D++ KD F E+I+Q + + + + + DSR + FV K++ F+ Sbjct: 9 DILKKDSLFREIIDQ-GHYHYNYSDVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLL 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 AI+QG V Y + P ++V + +K +SL A YG E + LA Sbjct: 65 SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 116 FTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 175 VQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK----- 229 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LL + S A+I D V+K + F + I N + + S Sbjct: 230 RLLMENSRAVIINSDMDHFSVLKEQVE--------DQEHDFYGSQSSNQIENSKAFSFSA 281 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 282 TGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-V 334 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 335 LTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQH 394 Query: 410 ADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAG 466 +I + +T D+P E+P I EI I +EK +R EAI+ A+ + N + D +++AG Sbjct: 395 PEIQVFLTADDPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAG 454 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + IV ++ D + L Sbjct: 455 KGADCYQIVQGKKEAYPGDAAVAENYL 481 >gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 244 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/177 (44%), Positives = 106/177 (59%), Gaps = 8/177 (4%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDY 362 L G F V N L A + +G D ++E L V GR E V + + VDY Sbjct: 52 LIGAFNVNNLLTALAGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDY 111 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE L+ R T G + +FGCGGDRD GKRP+M IA +LAD I TDDNPR+ Sbjct: 112 AHTPDALEKALQAARLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRT 171 Query: 423 EDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 ED KI A+I++G +EK +R +AI+TAIE N++DV+++AGKGHE I+ Sbjct: 172 EDNAKIMADILNGFVQ-VEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQII 227 >gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis SK321] gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis SK321] Length = 481 Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 143/498 (28%), Positives = 229/498 (45%), Gaps = 57/498 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 D++ KD F E+I+Q + + + + DSR + FV K++ F+ Sbjct: 9 DILKKDGLFREIIDQ-GYYHYNYSHVVFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---IL 118 AI+QG V Y + P ++V + +K +SL A YG +P+ +L Sbjct: 65 SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYG-NPQKKLKLL 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176 A TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 115 AFTGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQ 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 174 AVQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK---- 229 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293 LL + S A+I D V+K V Q F + I N + + Sbjct: 230 -RLLMENSRAVIINSDMDHFSVLKE---------QVADQDHDFYGSQSNNQIENSKAFSF 279 Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFE 347 S GK D+D L G F NA+ A C+ +G LE ++K VPGR E Sbjct: 280 SATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME 333 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407 V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 334 -VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLN 392 Query: 408 DLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVV 464 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++ Sbjct: 393 QHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVII 452 Query: 465 AGKGHETVHIVTNGEKKM 482 AGKG + IV G+K++ Sbjct: 453 AGKGADCYQIV-QGKKEV 469 >gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli OP50] Length = 262 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 134/255 (52%), Gaps = 7/255 (2%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S + + L+ L QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Sbjct: 11 TTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD 70 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIH 278 + Y AK L+ E + AII ADD + + + +A + + G+++ Sbjct: 71 MEHYEAAKWLLYSEHHCGQ--AIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLK 128 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 V + + S D + L G F V N L+A +A+G A +L+ + Sbjct: 129 ANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAAR 188 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 L V GR E V T + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GK Sbjct: 189 LQPVCGRME-VFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGK 247 Query: 399 RPIMGKIALDLADIA 413 RP+MG IA + AD+A Sbjct: 248 RPLMGAIAEEFADVA 262 >gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str. Miyayama] gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str. Miyayama] Length = 469 Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 111/444 (25%), Positives = 202/444 (45%), Gaps = 19/444 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++SD + + ++F A E H I +AI +GA +I+ + Y + + + Sbjct: 14 RIKNITSDPQKVGKDFLFYA---PSEKEHAHIREAINRGARSILTNQKYEEECLAQGVN- 69 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V ++ S ++ K P + AVTGTSGK SV F Q+C +G + + Sbjct: 70 ---FFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLS 126 Query: 149 ----PTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 PT + + + D+ + + +Y L L+ + + + + S ++ +D + Sbjct: 127 ASNEPTDALGLWQEKDHMILDAADMY--SILDDLAGRRIEYCCLAISGAAIESRMIDSVN 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 L A +F+NL RD ++ + F K+RL E+LP++ ++ Y+ +++ N Sbjct: 185 LKAAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQHCPNK 244 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +V + G I L Q +T+ V GK+ + G+F N + A GL I Sbjct: 245 --KVCTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAI 302 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382 + GID + + EH E++ + G EF+ +I D A T + L +L +I+ Sbjct: 303 SCGIDPSSI-EH-EQISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYN 360 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 + +V C + + M KIA + + I T D+ S EK R E++ P IE Sbjct: 361 DVTLVLRCSENYEGKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEI 420 Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466 +R +A+ AI +++V+ G Sbjct: 421 EDRKKAMEYAINNCKPSEIIVMQG 444 >gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae COH1] gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae COH1] Length = 483 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 136/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309 ++K + + G + I Q + V+GK + + L G+ Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYNINLIGK 297 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL Sbjct: 298 FNQENALAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428 + +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474 Query: 486 CDIIREIL 493 ++ ++ L Sbjct: 475 LEVAKKYL 482 >gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae 2603V/R] gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 2603V/R] Length = 484 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 44/487 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SETDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLIMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++K Y I K + H K ++ + + K L G+F Sbjct: 246 MDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYDIK-------LIGKF 298 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL+ Sbjct: 299 NQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSLK 356 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIR 429 +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 357 KLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVIS 416 Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 417 QEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGDL 475 Query: 487 DIIREIL 493 ++ ++ L Sbjct: 476 EVAKKYL 482 >gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus cristatus ATCC 51100] Length = 481 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 134/488 (27%), Positives = 229/488 (46%), Gaps = 46/488 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I + +++ +++S DSR + +F V + F+ + Sbjct: 9 DILKKDQNFREIIADGDYY-FNYQDLTFDKISYDSRKADSRTLF--FVKGEHFKREFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILA 119 A+A G + S D I P+L+V++ ++ +SL A YG HPE +LA Sbjct: 66 AVAAG-----LGFYLSETDLEVGI----PVLLVNDIKQAMSLIAMEFYG-HPEQKLKLLA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F I ++S + +T+ +F + + LTTP + L + ++ Sbjct: 116 FTGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFK-STLTTPESLDLFEMMAQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 + TH+ +E SS + R+ G+ G F N+ DHI H T + YF K Sbjct: 175 VANARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK----- 229 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LL S A++ +V+ +V + G+ F +I Q + Sbjct: 230 RLLMDNSRAVVVNSGMDHFQVLAE------QVANYGHD--FYGPDSANSILQSQAFSFEA 281 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +GK +D L G F NA+ A C+ +G + + + V PGR E V T Sbjct: 282 QGKLAGSYDI--QLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQTRV-PGRME-VLTQ 337 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 S G +++VDYAH +SL +L ++ G+ ++V G G++ + +R G + +I Sbjct: 338 SNGAKVFVDYAHNGDSLAKLLSVVQEHQKGQTVLVLGATGNKGESRRKDFGLLLNQHPEI 397 Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469 I+T D+P EDP I EI I ++ +R EAI+ AI + + + D +++AGKG Sbjct: 398 KVILTADDPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDAVILAGKGA 457 Query: 470 ETVHIVTN 477 + I+ + Sbjct: 458 DAYQIIND 465 >gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc kimchii IMSNU 11154] gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc kimchii IMSNU 11154] Length = 491 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 124/479 (25%), Positives = 219/479 (45%), Gaps = 47/479 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPIL 93 D+R ++A +FV + G F P+ + Q G +V + + + P Sbjct: 34 DTRQVKANTLFV-VKG------AFRPEYLTQTDGVSGLVTETRLDV---------SLPQW 77 Query: 94 VVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V + +K LS+ + +G +H I A TGT GK++ A I + + + + S Sbjct: 78 QVTDVQKALSILSMAFFGYPQHDLWIGAFTGTKGKTTAAYMAYNILKNT--TDKHVALFS 135 Query: 152 TISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T+ +N LTTP L K + G+TH+ +E SS + R+ G++ Sbjct: 136 TVDRITGNNSEDKKKSDLTTPESYELFKDMRRSVDNGMTHLVMEVSSQAYLKQRVYGLRY 195 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KR 259 G+F N+ DHI + H T + Y K+ LF+ II A+ + E+M K+ Sbjct: 196 NVGAFLNISPDHIGPNEHPTFEDYLAHKLMLFDH----SDQVIINAESDHLSEIMTHAKQ 251 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALV 317 H+ G G + + + AIH + + + K + LPG+F NA+ Sbjct: 252 THDLVYTYSLAGKGGAYTYTSQESAIHESRLTVLPSDLKALAGHYRLNLPGDFNESNAMA 311 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + G ++ L+++ +PGR + + G +VDYAH S+ +L+ + Sbjct: 312 ALIMSALAGASHDNMIRGLDEV-FIPGRMLSLPISGHG-VTFVDYAHNYASMHALLRFAQ 369 Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HG 435 GR++VV G G++ +R G++ +LAD+ +T D+P+ E P I EI H Sbjct: 370 NQYPEGRVLVVVGSPGNKGVSRRADFGRVVSELADVVYLTADDPQFESPMVIAKEIASHI 429 Query: 436 IPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +E + NRI+AI AI ++D+++VAGKG + + ++ D ++++ Sbjct: 430 TSETLEVHFEMNRIQAINQAISQATEKDIVIVAGKGEDPYQKINGVDEPYIGDYAVVKQ 488 >gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS6180] gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS6180] Length = 481 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 134/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMVFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H V I + + K Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q+ + L G F NA+ A C+ +G A + + + K V PGR E Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393 Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D +++A Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV + + D I R L Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIARHYL 481 >gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus mutans UA159] gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase; UDP-MurNac-tripeptide synthetase [Streptococcus mutans UA159] Length = 483 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 130/485 (26%), Positives = 218/485 (44%), Gaps = 53/485 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + +S DSR I+A +F V F+ +AI G V Y + Sbjct: 34 EVAFHHISYDSRDIKASTLF--FVKGATFKKEFLEKAIESGLTFYVAEKDYQV------- 84 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P+++V+N + + L A Y + + LA TGT GK++ A F I + G Sbjct: 85 --GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAAYFAYHIL-KQGYRP 141 Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 I +T +F + ++LTTP + L K ++ + G+TH+ +E SS R+ G Sbjct: 142 AMISTMNTTLDGKTFFK-SKLTTPESLDLFKMMAQAVANGMTHLIMEVSSQAYLVGRVYG 200 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-----YSK 254 + G F N+ DHI H T + YF K LL K S +I + Sbjct: 201 LTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLLKHSRYVIVNSQMNHFALIKE 255 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQ 311 +V + H+ + GK+ I N + + + GK +D L G F Sbjct: 256 QVADQPHD---------FYGKY----SDNQIINSKAFSFDLTGKLAGHYDI--QLTGSFN 300 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA+ AA C+ +G + + + + VPGR E V G +++VDYAH +SLE Sbjct: 301 QENAVAAALACLQLGASQTDIQKGIVQT-TVPGRME-VLIQKNGAKVFVDYAHNGDSLEK 358 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRA 430 +L + G +I++ G G++ + +R G + ++ I+T D+P +EDP+ I Sbjct: 359 LLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNNEDPQLISQ 418 Query: 431 EIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 EI H I + +R +AI+ A+ + + D +++AGKG + I+ + D ++ Sbjct: 419 EIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIIKGKRTAYAGDIEV 478 Query: 489 IREIL 493 R+ L Sbjct: 479 ARKYL 483 >gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus agalactiae 18RS21] gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus agalactiae 18RS21] Length = 484 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 44/487 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLIMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 ++K Y I K + H K ++ + + K L G+F Sbjct: 246 MDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYDIK-------LIGKF 298 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL+ Sbjct: 299 NQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSLK 356 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIR 429 +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 357 KLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVIS 416 Query: 430 AEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 417 QEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGDL 475 Query: 487 DIIREIL 493 ++ ++ L Sbjct: 476 EVAKKYL 482 >gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus sp. 2_1_36FAA] Length = 481 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 218/462 (47%), Gaps = 49/462 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++S DSR++ +F V + F+ A+ G + + S DF I Sbjct: 35 FDKISYDSRNVTNTTLF--FVKGENFKKEFLEGAVESGLKFYISES-----DFEVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LVV++ ++ +SL A YG +P++ ILA TGT GK++ A F QI +S + Sbjct: 85 -PVLVVNDIKQAMSLIAMEFYG-NPQDKLKILAFTGTKGKTTSAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGKNFFK-SSLTTPESLDLFKMMAQAVANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A F N+ DHI H T + YF K LL + S A++ +++K Sbjct: 202 DASVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMENSRAVVVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q V GK +D L G F NAL A Sbjct: 254 ---QVSSIEHD--FYGENSSNTIIDSQAFNFEVSGKLAGKYDI--QLIGRFNQENALAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G L ++K L VPGR E V T G +++VDYAH +SL +L + Sbjct: 307 LACLRLGAS----LTDIQKGITLTRVPGRME-VLTQKNGAKVFVDYAHNGDSLTKLLNVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHG 435 + G+ ++V G G++ + +R G + +I I+T D+P EDP I EI Sbjct: 362 QEHQKGQTVLVLGATGNKGESRRKDFGILLNKHPEIQVILTADDPNREDPVTIAKEIASY 421 Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIV 475 I + +R EAI+ A+ + ++ D +++AGKG + IV Sbjct: 422 ISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIV 463 >gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str. Illinois] gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str. Illinois] Length = 470 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 108/443 (24%), Positives = 199/443 (44%), Gaps = 18/443 (4%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++SD + + ++F A E H I +AI +GA++I+ + Q + + Sbjct: 16 RIKNITSDPQKVGKDFLFYA---PSEKEHAHIREAINRGAKSILTN-----QKYEECLEQ 67 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V ++ S ++ K P + A+ GTSG+ SV F Q+C +G + + Sbjct: 68 GVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKAVTLS 127 Query: 149 ----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 P T + + + L + + + L L+ + + + + S+ ++ +D + L Sbjct: 128 VSNEPMDTPKLWQEKDHLISDAA-DMYNILDDLAERRIEYCCLAISAAAIESRMIDSVNL 186 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A +FTNL RD ++ + K+RL E+LP+ ++ Y+ +M+ N Sbjct: 187 KAAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQHCPNK- 245 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +V + G I L Q +T+ + GK+ + G+FQ N + A GL I+ Sbjct: 246 -KVCTYGRATSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGLAIS 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGR 383 GID + + EH E++ + G EF+ +I D A T + L +L +I+ Sbjct: 305 CGIDPSSI-EH-EQISPLAGYMEFLEDYGEERKIMTDCAQTPSELHDLLLSIKWHFPYND 362 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 + +V C + + M KIA + + I T D+ S EK R E++ P IE Sbjct: 363 VTLVLRCSENYEARNTLKMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELMSCCPKAIEIE 422 Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466 +R +A+ AI +++V+ G Sbjct: 423 DRKKAMEYAINNCKPSEIIVMQG 445 >gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae A909] gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae CJB111] gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae A909] gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae CJB111] Length = 484 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309 ++K + + G + I Q + V+GK + + L G+ Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428 + +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNHDNYSGD 474 Query: 486 CDIIREIL 493 ++ ++ L Sbjct: 475 LEVAKKYL 482 >gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus agalactiae NEM316] gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 515] gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316] gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae 515] Length = 484 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309 ++K + + G + I Q + V+GK + + L G+ Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428 + +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474 Query: 486 CDIIREIL 493 ++ ++ L Sbjct: 475 LEVAKKYL 482 >gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus agalactiae ATCC 13813] Length = 484 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 135/488 (27%), Positives = 224/488 (45%), Gaps = 46/488 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G +S Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITTG-----LSFYV 76 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 S D+ A I P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 77 SEIDYGADI----PVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSNAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309 ++K + + G + I Q + V+GK + + L G+ Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428 + +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474 Query: 486 CDIIREIL 493 ++ ++ L Sbjct: 475 LEVAKKYL 482 >gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10394] gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes str. Manfredo] gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10394] gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pyogenes str. Manfredo] Length = 481 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 134/511 (26%), Positives = 231/511 (45%), Gaps = 54/511 (10%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H F I Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-------------MFYGPLSDNQITTS 274 Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q + +G+ +D L G F NA+ A C+ +G A + + + K V PGR Sbjct: 275 QAFSFEAKGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 332 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRV 390 Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D + Sbjct: 391 IHQHPNLTVILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + IV + + D I + L Sbjct: 451 IIAGKGADAYQIVKGQQVAYAGDLAIAKHYL 481 >gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus peroris ATCC 700780] Length = 481 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 145/513 (28%), Positives = 228/513 (44%), Gaps = 78/513 (15%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAE 69 F E+I+ + + + + +S DSR + +F A KE+ ++ AI+QG Sbjct: 17 FREIIDHEN-YLYNYTNVTFDSISYDSRKAKENCLFFAKGAAFKEE---YLVSAISQGLG 72 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 V Y + P++VV+N +K +SL A YG +P+ ILA TGT GK Sbjct: 73 WYVAEKDYQV---------GIPVIVVNNIKKAMSLIAMVFYG-NPQKKLKILAFTGTKGK 122 Query: 127 SSVASFVQQIC----QRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 ++ A F I Q + LS+ G T SSF +TP I L ++ Sbjct: 123 TTAAYFAYHILSQRYQTALLSTMNTTLDGKTFFKSSF------STPENIDLFDMMAQAVK 176 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEEL 237 TH+ +E SS HR+ G+ G F N+ DHI H T + YF K L Sbjct: 177 NNRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK-----RL 231 Query: 238 LPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L + S A++ D +EV ++ H+ F + I N + Sbjct: 232 LMENSRAVVVNSDMDHFNLLKEEVEQKEHD-------------FYGSQSDNQIKNSKAFR 278 Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346 S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 279 FSATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIQKGIAETRVPGRM 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V T G ++ +DYAH +SL ++ + +G I +V G G++ + +R G + Sbjct: 333 E-VLTQKNGAKVIIDYAHNGDSLTKLISVVEEHHTGNIALVLGSTGNKGESRRKDFGLLL 391 Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQ-D 460 +I + +T D+P EDP I EI H + I+ R EAI+TA+ + ++ D Sbjct: 392 NKHPEIQVFLTTDDPNYEDPRAIADEISSYIEHPVKTIID---REEAIKTAMSITSQPLD 448 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++AGKG + I+ +++ D I + L Sbjct: 449 AVILAGKGADCYQIINGVKEEYPGDAAIAKRYL 481 >gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS315] gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes SSI-1] gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pyogenes MGAS315] gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2, 6-diaminopimelate ligase [Streptococcus pyogenes SSI-1] Length = 481 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 133/506 (26%), Positives = 229/506 (45%), Gaps = 44/506 (8%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DEYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 LL + S A++ VM +V + F I Q + Sbjct: 230 --RLLMENSRAVVI------NSVMDHFSFLADQV--ADQEHVFYGPLSDNQITTSQAFSF 279 Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +G+ +D L G F NA+ A C+ +G A + + + K V PGR E V Sbjct: 280 EAKGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 336 TMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHP 395 Query: 411 DIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGK 467 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D +++AGK Sbjct: 396 NLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + IV + + D I + L Sbjct: 456 GADAYQIVKGQQVAYAGDLAIAKHYL 481 >gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes M1 GAS] gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS5005] gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Streptococcus pyogenes M1 GAS] gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS5005] Length = 481 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H V I + + K Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q+ + L G F NA+ A C+ +G A + + + K V PGR E Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393 Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D +++A Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV + + D I + L Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIAKHYL 481 >gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS8232] gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS9429] gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10270] gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Streptococcus pyogenes MGAS8232] gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS9429] gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10270] Length = 481 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H V I + + K Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q+ + L G F NA+ A C+ +G A + + + K V PGR E Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393 Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVA 465 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D +++A Sbjct: 394 HPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV + + D I + L Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIAKHYL 481 >gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Aerococcus viridans ATCC 11563] Length = 514 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 138/494 (27%), Positives = 228/494 (46%), Gaps = 48/494 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN ++ DSR + A +FV N + +L A+ +GA A + S QD++A I Sbjct: 34 INRITFDSRAVTANTLFVCKGLNFKASYL--KDAVDRGAVAYL-----SEQDYAADI--- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSFQ 146 P ++V++ R ++ A+ Y + P +A++G T GK++ A FV QI Q Sbjct: 84 -PGIIVEDIRLAMAQLANFFY-QSPWQDVAISGITGTKGKTTTAGFVNQILTLDSQEKGQ 141 Query: 147 IGPTSTISSFAQD------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 P S+F D + LTTP + L + L+ + GV ++E SS L HR D Sbjct: 142 PLPGFVSSTFNYDGLEKTPSTLTTPEAMDLYEMLATMRDNGVKRATMEVSSQALKYHRAD 201 Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +K+ +F N+ DHI H T YF +K+R+F+ A+I D + +E++K Sbjct: 202 DVKMEVVAFLNISPDHISPVEHPTFADYFQSKLRIFDH----GKVAVINEDTDHYEEILK 257 Query: 259 RAHNAGC--RVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A +A R+++V + ++ KQ + +G++ + G F + N Sbjct: 258 AAEDAENIQRIVTVSRKNPAADYFADELAFSETKQTFVVKNQGEEIPMALNVLGHFNINN 317 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 ALVAA + ++ A + + L GR E + VD+AH S E + Sbjct: 318 ALVAAAIARENDVEWATIQKALGDAK-TDGRMEIYRSTDNQLTFVVDFAHNKISFEELFS 376 Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEI 432 +++ + I +VFG G + + +R MG++A L+ +I + +DD P ED KI AEI Sbjct: 377 SVKEMAPDNDIRIVFGSAGGKAENRRADMGRVAGLNTNEIYLTSDD-PNFEDSYKIMAEI 435 Query: 433 IHGI----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 I G+ A + AI K +VVAGKG E I NG + Sbjct: 436 EEAINEVNPDAKVRSNLDRTGSIYMAYKDAIAS-GKPTTIVVAGKGSEDT-IKINGRNEF 493 Query: 483 SV-DCDIIREILGL 495 V D + +++++ Sbjct: 494 YVPDFEYVQQLIAF 507 >gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 503 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 106/401 (26%), Positives = 193/401 (48%), Gaps = 31/401 (7%) Query: 11 FPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL++ + I M R+ +I +S S ++ G +FV + G K DGH ++ +A GA Sbjct: 4 LKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQNGAV 63 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A +V LQ+ + P VV N+R L+ +R YG + ++ +T T+GK+ Sbjct: 64 AAIVEE---LQE-----DVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLIGITATNGKT 115 Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + V I ++SG + IG I + LTTP + L LS + +GV+HV+ Sbjct: 116 TTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHVT 175 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SS L+ HR++ + + N+ R+HID H + + YF AK L + S A++ Sbjct: 176 MEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRN-ASENSIAVL 234 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISV--------- 295 D YS ++ + V++ G K H+ K + + + T+ + Sbjct: 235 NLDCPYSASLVDQTK---AEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQ 291 Query: 296 --EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 E +F+ +PG VYN++VA + + G+ +A + E L+ V RF+F+ Sbjct: 292 QYEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQFIFEED 351 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 +I D+ S ++++ L ++ + ++ +V+ G+R Sbjct: 352 I--KIIDDHFANSGNIDVTLGTLKYMDYEKLHLVYAIRGER 390 >gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187] gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187] gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 252 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/180 (41%), Positives = 104/180 (57%), Gaps = 12/180 (6%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G F VYNAL A + + GI + + L L + GR E + N + + VDYAHT Sbjct: 59 LVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDEN-QDFLVIVDYAHT 117 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L I + G++I VFGCGGDRD KR IMG IA +D +T DNPRSEDP Sbjct: 118 PDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDP 177 Query: 426 EKIRAEIIHGIPGFIEKGN---RIE-----AIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 + I +I GF++ N ++E AI AI M + D++++AGKGHET I+ + Sbjct: 178 QAIMKDI---EKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKD 234 >gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis NCTC 12261] gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus mitis NCTC 12261] Length = 481 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 142/508 (27%), Positives = 230/508 (45%), Gaps = 54/508 (10%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61 D++ KD F E+I+Q + + + + DSR + FV K++ F+ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNYSHVIFDTICYDSRKAKEKSLFFVKGAAFKKE---FLI 64 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---IL 118 AI+QG V Y + P ++V + +K +SL A YG +P+ +L Sbjct: 65 SAISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYG-NPQKKLKLL 114 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSY 176 A TGT GK++ A F I + + +T+ +F + + LTTP I L ++ Sbjct: 115 AFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFK-SALTTPESIDLFDMMNQ 173 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF 234 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 174 AVQNDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK---- 229 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 LL + S A+I D V+K +V + F + I N + + S Sbjct: 230 -RLLMENSRAVIINSDMDHFSVLKE------QVEDQDHD--FYGSQSDNQIENSKAFSFS 280 Query: 295 VEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEF 348 GK D+D L G F NA+ A C+ +G LE ++K VPGR E Sbjct: 281 ATGKLAGDYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 334 VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQ 393 Query: 409 LADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVA 465 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++A Sbjct: 394 HPEIQVFLTADDPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV ++ D + L Sbjct: 454 GKGADCYQIVQGKKEAYPGDAAVAENYL 481 >gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae H36B] gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus agalactiae H36B] Length = 484 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 46/488 (9%) Query: 21 FPMQWRER-KINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77 + W + N +S DSR I + +F A KE ++ AI G V Y Sbjct: 26 YYYNWTQNVTFNALSYDSRQISSDTLFFAKGATFKKE----YLDSAITAGLSFYVSEIDY 81 Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQ 134 + + P+++V++ +K +SL + Y +P+N +LA TGT GK++ A F Sbjct: 82 GV---------DIPVILVNDIKKAMSLISMSFYN-NPQNKLKLLAFTGTKGKTTAAYFAY 131 Query: 135 QICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + + + +T+ SF + + LTTP + L + ++ +TH+ +E SS Sbjct: 132 HMLKVNHRPAMLSTMNTTLDGKSFFK-SHLTTPESLDLFRMMATAVENQMTHLVMEVSSQ 190 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+ DHI H T + YF + LL + S A++ Sbjct: 191 AYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYF-----FHKRLLMENSKAVVVNSQ 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309 ++K + + G + I Q + V+GK + + L G+ Sbjct: 246 MDHFNIVKEQ----VEYIPHDFYGDY----SENVITESQAFSFHVKGKLENTYDIKLIGK 297 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA+ A C+ +G+ + + + VPGR E V T + G +I+VDYAH +SL Sbjct: 298 FNQENAIAAGLACLRLGVSIEDIKNGIAQT-TVPGRME-VLTQTNGAKIFVDYAHNGDSL 355 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKI 428 + +L + G II+V G G++ Q +R G + ++ I+T D+P EDP I Sbjct: 356 KKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVI 415 Query: 429 RAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485 EI I P I +R EAI A + N K D +++AGKG + I+ S D Sbjct: 416 SQEIASHINRPVTIII-DREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGD 474 Query: 486 CDIIREIL 493 ++ ++ L Sbjct: 475 LEVAKKYL 482 >gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK115] Length = 481 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 222/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I D +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDHSRAVIVNSDMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NA+ A Sbjct: 254 ---QVASM--EHDFYGAGSSNTITDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAIAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPIAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTDQEGDAVILAGKGADAYQIV-EGEK 467 >gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes MGAS10750] gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS10750] Length = 481 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 133/508 (26%), Positives = 230/508 (45%), Gaps = 48/508 (9%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDS-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H V I + + K Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAK 282 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q+ + L G F NA+ A C+ +G A + + + K V PGR E Sbjct: 283 GQLAGHYD-------IQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME- 333 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 334 VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQ 393 Query: 409 LADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNK-QDVLVVA 465 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + + +D +++A Sbjct: 394 HPNLTVILTADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQEAKDAVIIA 453 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + IV + + D I L Sbjct: 454 GKGADAYQIVKGQQVAYAGDLAIATHYL 481 >gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279] gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279] Length = 552 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 121/437 (27%), Positives = 202/437 (46%), Gaps = 39/437 (8%) Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 TP LVV + R+ ++L A +Y +HPE+ ++ +TGT GKS+VA ++ I +G Sbjct: 120 TPALVVSDVRRAMALVAPVIY-RHPEDQLHVVGITGTKGKSTVAYMLRSILVAAGQEPSI 178 Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +G T + ++ TTP L + L G + +E SS GL R+ G+ Sbjct: 179 LGSIETDDGKVRYESHNTTPEAPDLWRHLRNTVDAGRRTMVMEVSSQGLKYDRVLGLPFE 238 Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G F N+GRDHI H + YF +K+R+F + E + A D + V++ A +A Sbjct: 239 IGCFLNIGRDHISGVEHPDFEDYFASKLRIFNQC---EVAVVNLATD-HVDRVLQAAKSA 294 Query: 264 GC-RVLSVGYQGKFIHLKKVCAIH-------------NKQQVTI---SVEGK---DFDFL 303 C +V + G+ H KV + T+ + EG+ + Sbjct: 295 PCVATFAVEHAGEGSHGGKVWPVEPLFIASGVTQLPTGGLAFTVRERAAEGEIACEEHIE 354 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG F V NAL A + +G+ + L ++ VPGR E V + VDYA Sbjct: 355 LGMPGLFNVDNALAAISMARLLGVGYDAIRAGLAQIR-VPGRMELVSSADGHVLAIVDYA 413 Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H S E + K+++ R++ +FG G + Q +R + ++A AD + T+++P Sbjct: 414 HNELSFETLFKSVKAEYPDRRVVALFGAPGGKAQERREALPRVAGAYADHLVYTEEDPAH 473 Query: 423 EDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIE---MLNKQDVLVVAGKGHETVHIVT 476 + E I AE++ P + +R EA+RT +E + V+++ KG E Sbjct: 474 DRVEDICAELVKNTPAGVSHEVILDREEAVRTVLERALACGEPSVVLLLAKGDEETMHRG 533 Query: 477 NGEKKMSVDCDIIREIL 493 + ++ D I RE+L Sbjct: 534 DEYPEVKSDLAIAREVL 550 >gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 481 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 222/468 (47%), Gaps = 50/468 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++S DSR++ +F V + F+ A+ G + + S DF I Sbjct: 35 FDKISYDSRNVTNTTLF--FVKGENFKKEFLEGAVESGLKFYISES-----DFEVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+LVV++ ++ +SL A YG +P++ ILA TGT GK++ A F QI +S + Sbjct: 85 -PVLVVNDIKQAMSLIAMEFYG-NPQDKLKILAFTGTKGKTTSAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L + ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGKNFFK-SSLTTPESLDLFEMMAQAVANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 A F N+ DHI H T + YF K LL + S A+I +++K Sbjct: 202 DASVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMENSRAVIVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NAL A Sbjct: 254 ---QVSSIEHD--FYGENSSNTIIDSQAFSFEASGKLAGKYDI--QLIGRFNQENALAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G L ++K L VPGR E V T G +++VDYAH +SL +L + Sbjct: 307 LACLRLGAS----LTDIQKGIALTRVPGRME-VLTQKNGAKVFVDYAHNGDSLTKLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHG 435 + G+ I+V G G++ + +R G + +I I+T D+P EDP I EI Sbjct: 362 QEHQKGQTILVLGATGNKGESRRKDFGILLNKHPEIQVILTADDPNREDPVTIAKEIASY 421 Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKK 481 I + +R EAI+ A+ + ++ D +++AGKG + IV NG K+ Sbjct: 422 ISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIV-NGIKE 468 >gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pyogenes ATCC 10782] gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus pyogenes ATCC 10782] Length = 481 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 134/511 (26%), Positives = 230/511 (45%), Gaps = 54/511 (10%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGFSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK--- 229 Query: 234 FEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 LL + S A++ D +S +V + H F I Sbjct: 230 --RLLMENSRAVVINSGMDHFSFLADQVADQEH-------------VFYGPLSDNQITTS 274 Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q + G+ +D L G F NA+ A C+ +G A + + + K V PGR Sbjct: 275 QAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 331 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T + +++VDYAH +SLE +L + +G+++++ G G++ + +R G++ Sbjct: 332 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRV 390 Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462 ++ ++ T D+P EDPE I EI I +E +R +AI+ A+ + +D + Sbjct: 391 IHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAV 450 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 ++AGKG + IV + + D I + L Sbjct: 451 IIAGKGADAYQIVKGQQVAYAGDLAIAKHYL 481 >gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase [Deinococcus proteolyticus MRP] Length = 504 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 214/477 (44%), Gaps = 50/477 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W +++ V+ + + G +F AI G + DGH F+ +A +GA A + + A Sbjct: 26 WAAAEVSAVTHRADWVTPGALFAAIRGERHDGHAFLQEAAERGAVAALG------EGLPA 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSV----ASFVQQIC 137 S P L V + R L+ A+ L G HP ++ VTGT GK++ A+ ++ Sbjct: 80 GQHSPLPYLQVPDARAALADAAALLSG-HPSRELKVVGVTGTDGKTTTSWLTAALLRAGG 138 Query: 138 QRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 Q +GL + +Q+ P + ++ TTP L L + +E SSH L Sbjct: 139 QSTGLLSSAGYQL-PDGQLRAY--PAHFTTPEAPQLQGLLREMVDARAQAAVIETSSHAL 195 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 R+ G+ A +T+L ++H+D+H T + YF AK RL E + A++ DD +++ Sbjct: 196 TLERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRRLIE----RAPLAVLNLDDPWTR 251 Query: 255 --------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLF 304 E+ A AG + +G+ + + +V+G F Sbjct: 252 HLRGVAPQELTYSAAQAGADWRASDLRGE-----------AGGRASFAVDGPAGRFRATL 300 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PL G FQ+ NAL A G+ +A + L + PGR E V + R+ D AH Sbjct: 301 PLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVPSRPGQPRVVSDSAH 360 Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 T SLE L+ +R +T G++ V G G RD K M +A AD I+T+ + R Sbjct: 361 TPLSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVASAWADQVILTEADHRET 420 Query: 424 DPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 E+I + G + G+R +AI A+ D +++A KG E H + G Sbjct: 421 PLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIANKGGE--HFLQRG 475 >gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus vaginalis ATCC 49540] Length = 512 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 127/478 (26%), Positives = 214/478 (44%), Gaps = 53/478 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFV--AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 P + ++ ++S DSR + G +F + N E ++ AI +GA A + Y+ Sbjct: 31 PEKAARAEVTDLSYDSRKVSDGTLFFCKGLKFNPE----YLASAIKEGATAAISELVYT- 85 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 D +TP ++V + +K +++ A YG E + + TGT GK++ F + I Sbjct: 86 -DKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCPDEKLELIGFTGTKGKTTSVYFTRHIL 144 Query: 138 QRSGLSSFQIGPT-STISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + GP SS + + LTTP + L + + G+ ++++E Sbjct: 145 ------AHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESLDLFRMMKEAVDNGMKYLAME 198 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAII 246 SS + R+ G+ G F N+ DHI H T Y K +++ I+ Sbjct: 199 VSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDDYLWCK----SQIIVNSDTVIL 254 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG---------YQGKFIHLKKVCAIHNKQQVTISVEG 297 Y + + ++AH G ++++ G Y GK H + HN ++ E Sbjct: 255 NRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGK-DHGYFDVSTHNDNLPEVTGE- 312 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F +PG F NAL A + + D++ + L++ V PGR EF+ N+ G Sbjct: 313 ----FRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKV-PGRMEFLKNNA-GMV 366 Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH SL K ++ GR+IVV G G + + +R +G+ + AD+AI+T Sbjct: 367 ACVDYAHNYLSLSESFKFMKHEYPDGRLIVVIGAAGGKAESRRKDVGRALSEYADVAILT 426 Query: 417 DDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 ++ EDP E I+ I + I +R+ AI+ A EM D + +A KG E Sbjct: 427 SEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQAFEMAKPGDAMFMAAKGRE 484 >gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 490 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 188/401 (46%), Gaps = 25/401 (6%) Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR---- 139 I + P V N +K LSL + + E + A TGT GK++ A F + + Sbjct: 70 IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTAAYFAYTMLKEATNN 129 Query: 140 -SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + L S T +S + + LTTP L K + + G+TH+ +E SS ++R Sbjct: 130 HTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTHLVMEVSSQAYLKNR 189 Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + G++ G+F N+ DHI + H T + Y K+ L L I+ A+ + + Sbjct: 190 VYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLML----LDHSDEVIVNAETDHFDTI 245 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYN 314 A A +V + Q + + AIH + + E + + +PG+F N Sbjct: 246 YTYAKKAHHKVYTYSRQ---MFTSEESAIHESRFTVVKSEFNEMLGSYRLNVPGDFNESN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A L G+ +++ L+++ +PGR + N G +VDYAH S++ +L Sbjct: 303 AMAAMMLVSFAGVKHQAMVKGLDEV-FIPGRMLSLPINGHG-VAFVDYAHNFVSMQALLS 360 Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +GR++VV G G++ +R G + DLAD+ +T D+P+ E+P I EI Sbjct: 361 FAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLADVVYLTADDPQFENPLDIAHEIA 420 Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + NRI AI AI N+ D+++VAGKG + Sbjct: 421 AHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGKGED 461 >gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 518 Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 117/422 (27%), Positives = 192/422 (45%), Gaps = 45/422 (10%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGH 57 + L+ L+ PEL + + + + I+ ++ +S+ + G IFVA G K D H Sbjct: 11 ISLKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAH 70 Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPEN 116 +I +AIA GA +++ A D+ ++ S P V N RK L+ AS Y HP + Sbjct: 71 DYIEEAIANGASTVILERA----DYIDKVKDSAIPYFKVRNGRKTLAKLASTFYD-HPSH 125 Query: 117 ILAVTGTSGKSSVAS---FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAK 172 L VTG +G + + + I + G+ S IG + I+ D++LTTP L Sbjct: 126 RLIVTGITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYS 185 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + + V +++ E SSHGL Q R+ I TN+ DH+D+H + YF +K + Sbjct: 186 LIEKMVQKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTK 245 Query: 233 LFEELLPKESPAIIYADDA------------------YSKEVMKRAHNAGCRVL--SVGY 272 F+ L P +S +++ ADD S M A N + S Y Sbjct: 246 FFQMLSP-DSISVLNADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTY 304 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 Q K +++ + NK V + + +PG+ +YN L+A +CI G D V Sbjct: 305 QIK----EELPTVTNK-----PVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQV 355 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 ++ E+ + R E + NS I D AH S+ + + I + R+++VF G Sbjct: 356 IKTAEQFPGLFRRLEVIYKNSF--TIIDDCAHNPASIRSVFETISQLPFNRLVIVFAIRG 413 Query: 393 DR 394 R Sbjct: 414 SR 415 >gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pyogenes NZ131] gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus pyogenes NZ131] Length = 481 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 127/487 (26%), Positives = 218/487 (44%), Gaps = 45/487 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + ++ +S DSR + +F A K D ++ +AI G + + Y L Sbjct: 26 YHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD---YLKEAITNGLQLYISEVDYEL 82 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137 P+++V + +K +SL A YG E + LA TGT GK++ A F + Sbjct: 83 ---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHML 133 Query: 138 QRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + S + F T+ ++LTTP + L ++ + G+TH+ +E SS Sbjct: 134 KESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLV 193 Query: 197 HRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAY 252 R+ G+ G F N+ DHI H T + YF K LL + S A++ D + Sbjct: 194 DRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVINSGMDHF 248 Query: 253 S---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 S +V + H V I + + K Q+ + L G Sbjct: 249 SFLADQVADQEH-----VFYGPLSDNQITTSQAFSFEAKGQLAGHYD-------IQLIGH 296 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA+ A C+ +G A + + + K V PGR E V T + +++VDYAH +SL Sbjct: 297 FNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSL 354 Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKI 428 E +L + +G+++++ G G++ + +R G++ ++ ++ T D+P EDPE I Sbjct: 355 EKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDI 414 Query: 429 RAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I +E +R +AI+ A+ + +D +++AGKG + IV + + D Sbjct: 415 SKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDL 474 Query: 487 DIIREIL 493 I + L Sbjct: 475 AIAKHYL 481 >gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas aeruginosa PAO1] Length = 325 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 11/333 (3%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 P ++QL FP R+ I E++ DS ++ +F+ + G +DG I A+ +GA A Sbjct: 1 MPMSLSQL--FPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATA 58 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128 + AY + S+ P++ V LS A R YG+ +++ VTGT+GK+S Sbjct: 59 V----AYEAEGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTS 114 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V+ V Q G +G T + R TTP P+ + L+ L G V++ Sbjct: 115 VSQLVAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAM 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R+ + FTNL RDH+DYH + +AY AK +LF P +I Sbjct: 175 EVSSHGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFA--WPDLRCRVIN 232 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 DD + + + ++ S+ F++ ++ + + + PL Sbjct: 233 LDDDFGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLL 292 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 G F + N L A G + +G +L L +L Sbjct: 293 GRFNLSNLLAAVGALLGLGYPLGDILRTLPQLQ 325 >gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Enterococcus faecium DO] gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic peptidoglycan synthetases, C-terminal [Enterococcus faecium DO] gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1162] gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a01] gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133B] gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133A] gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133C] gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0133a04] gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium TX0082] Length = 501 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 137/487 (28%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +LK + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 373 LLKFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492 Query: 487 DIIREIL 493 I++ ++ Sbjct: 493 AIVKRLI 499 >gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,230,933] gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,410] gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,408] gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68] Length = 509 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 137/487 (28%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 47 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 94 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +LK + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 381 LLKFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500 Query: 487 DIIREIL 493 I++ ++ Sbjct: 501 AIVKRLI 507 >gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM 7454] gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM 7454] Length = 371 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 112/389 (28%), Positives = 176/389 (45%), Gaps = 33/389 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175 ++ VTGT+GK++ A+ + + + G IG + + + TTP L + L Sbjct: 1 MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + + + +E SSHGL R GI G FTNL +H+D+H+T YF AKM Sbjct: 61 EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMI--- 117 Query: 236 ELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 LL ++ DD Y +KE+ K A +S+ K+ N ++V Sbjct: 118 -LLNNSKKQVVNLDDDYGKRAKEIFKDA-----LTISINEDSKY-------RAKNIKRVD 164 Query: 293 ISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + +E F L G + +YN+L A + +G + + LE V RFEF+ Sbjct: 165 LGLEFTVNGVKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFI- 223 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 N G I VD+AHT + E + K++ +I V+G GDR R +GKI+ Sbjct: 224 ENKLGINIVVDFAHTPEAFENLFKDLP--KDKKIYAVYGINGDRTYDIRKAVGKISAKYG 281 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAIEMLNKQDVLVV 464 +++T D+P+ + E I +I G+ KG +R EAI+ I K D + + Sbjct: 282 VFSVITTDDPKFDTFENISQQIKEGVDE--NKGESIIIKDRKEAIKYGISHAKKGDFVFM 339 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG E K + + IRE+L Sbjct: 340 LGKGEEKFLKFNANIKTYYNEKETIREVL 368 >gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis 05ZYH33] gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis 98HAH33] gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis SC84] gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis P1/7] gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis BM407] gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus suis 05ZYH33] gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase) [Streptococcus suis 98HAH33] gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis SC84] gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis BM407] gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus suis P1/7] gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis JS14] Length = 481 Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 138/493 (27%), Positives = 222/493 (45%), Gaps = 77/493 (15%) Query: 25 WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + + + +S DSR + +F A + KE F+ +AI G V Y + Sbjct: 30 WTDVQFDALSYDSRTVSPMTLFFAKGLAFKKE----FLEKAIEAGLAFYVSEINYEV--- 82 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139 P ++V + ++ +SL A +G HP+ +LA TGT GK++ A F I ++ Sbjct: 83 ------GIPAIIVHDIKQAMSLIAMEFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135 Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 S + +T+ +F + + LTTP + L ++ G+TH+ +E SS Sbjct: 136 SKKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVK 194 Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G+ G F N+ DHI H T + YF K LL S A+I Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313 NAG V + ++ Q++ S G DF L G + + Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294 Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361 NA+ A C+ +G LE +H VPGR E V T G +++VD Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420 YAH +S++ ++ + +G++ ++ G G++ + +R G + D I I+T D+P Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDP 406 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIV 475 EDP E+IRA + FI +R EAIRTA+ + +D +++AGKG + IV Sbjct: 407 NREDPAAIAEQIRAHMTR-TSNFIL--DREEAIRTAMSQTSSPKDAVIIAGKGADAYQIV 463 Query: 476 TNGEKKMSVDCDI 488 NGEK + D D+ Sbjct: 464 -NGEKA-AYDGDL 474 >gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703] Length = 192 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 10/176 (5%) Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F V N LVA +++G +L L V GR E + + VDYAHT + Sbjct: 2 GAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKP-TVVVDYAHTPD 60 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 +LE L R G++ VFGCGGDRD+GKRP+MG IA LAD +VTDDNPRSE+P+ Sbjct: 61 ALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQA 120 Query: 428 IRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I A+I+ G+ ++ G+ R EA+ +AI DV+++AGKGHE +V N Sbjct: 121 IVADILSGL---LDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGN 173 >gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing bacterium SS3/4] Length = 484 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 135/491 (27%), Positives = 227/491 (46%), Gaps = 47/491 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ ++EV DSR + +FV I G+ D H FIP + G + +VV + Sbjct: 11 DQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGCKVLVVEKEVEVP------ 64 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASFVQQICQRSGLSS 144 ++ ++ V++ R L+ ++ +G E ++ + T K + ++ + + +G + Sbjct: 65 -ADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGKKT 123 Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG + F N TTP + + G +E SS L HR+ G Sbjct: 124 GLIGTNGAVIGDVKFPTSN--TTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGG 181 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I G FTN+ DHI H++ + Y K RL L I+ + EV+K Sbjct: 182 IMFDYGLFTNISPDHIGPKEHKSFEEYLFYKSRL----LTVCKTGIVNRLTDHYDEVVK- 236 Query: 260 AHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQV 312 +A CR+L+ + G IH + H+ + S+ G D +PG+F Sbjct: 237 --DATCRLLTYALNGNADFMGDDIHYA---SNHDFVGIEFSIHGMLDGRVRVGMPGKFNA 291 Query: 313 YNALVAAGLC-IAIGIDSALVLEHLEKLHV-------VPGRFEFVGTNSRGGRIYVDYAH 364 NAL A +C +A+ S ++ +H ++ + V GR E + S+ + VDYAH Sbjct: 292 DNALAALAVCTLALSGGSGVLDDHTKQAILGSLVKVRVDGRME-IAHVSKKCSVIVDYAH 350 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + S+E +L +R R++ VFGCGG+R + +R MG+I +AD+ I+T DNPR E Sbjct: 351 NAVSMESLLTTLRDYHPKRLVCVFGCGGNRARDRRYSMGEIGGKMADLCIITADNPRFEK 410 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480 E I +I G+ ++ +R EAI AI + D++ + GKGHE + G K Sbjct: 411 NEDIIKDIEVGLAKTDGTYLVIPDRQEAIFYAIRNAEEGDMIAIIGKGHEDYQEI-EGVK 469 Query: 481 KMSVDCDIIRE 491 +D +++ E Sbjct: 470 HHFLDREVVEE 480 >gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5] gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5] Length = 506 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 229/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQHQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 495 GDFALAKMII 504 >gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis VMC66] gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis VMC66] Length = 481 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A+ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLVMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NA+ A Sbjct: 254 ---QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +I+VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G++ ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11] gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11] Length = 508 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 135/482 (28%), Positives = 223/482 (46%), Gaps = 45/482 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR I A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDITAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ S Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYS 494 Query: 484 VD 485 D Sbjct: 495 GD 496 >gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 490 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 187/401 (46%), Gaps = 25/401 (6%) Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQR---- 139 I + P V N +K LSL + + E + A TGT GK++ A F + + Sbjct: 70 IDVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTAAYFAYTMLKEATNN 129 Query: 140 -SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + L S T +S + + LTTP L K + + G+TH+ +E SS ++R Sbjct: 130 HTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTHLVMEVSSQAYLKNR 189 Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + G++ G+F N+ DHI + H T + Y K+ L L I+ A+ + + Sbjct: 190 VYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLML----LDHSDEVIVNAETDHFDTI 245 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYN 314 A +V + Q + + AIH + + E + + +PG+F N Sbjct: 246 YTYAKKTHHKVYTYSRQ---MFTSEESAIHESRFTVVKSEFNEMLGSYRLNVPGDFNESN 302 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A L G+ +++ L+++ +PGR + N G +VDYAH S++ +L Sbjct: 303 AMAAMMLVSFAGVKHQAMVKGLDEV-FIPGRMLSLPINGHG-VAFVDYAHNFVSMQALLS 360 Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +GR++VV G G++ +R G + DLAD+ +T D+P+ E+P I EI Sbjct: 361 FAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLADVVYLTADDPQFENPLDIAHEIA 420 Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I + NRI AI AI N+ D+++VAGKG + Sbjct: 421 AHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGKGED 461 >gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0027] Length = 514 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 229/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQHQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 502 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 503 GDFALAKMII 512 >gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4248] gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4248] Length = 511 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 228/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 500 GDFALAKMII 509 >gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1] gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1] Length = 508 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 132/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I IP + +++G EAI A+ + D +V+AGKG Sbjct: 436 CQEIQAHITKEIPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 479 >gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1342] Length = 516 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKVMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 489 >gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1039] gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1039] Length = 501 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 257 ETADLFQIPTITYGRLEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492 Query: 487 DIIREIL 493 I++ ++ Sbjct: 493 AIVKRLI 499 >gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1] gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1] Length = 480 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 132/469 (28%), Positives = 222/469 (47%), Gaps = 49/469 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 60 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347 Query: 370 EMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R S GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 348 KNLLTFVREEHSDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +++G EAI A+ + D +V+AGKG + Sbjct: 408 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 453 >gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 126/256 (49%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N+ TT S I + + LS + + VT ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NQNTTASAIEVQQILSNMLTHKVTFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G QG Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 124 WMSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1636] Length = 501 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492 Query: 487 DIIREIL 493 I++ ++ Sbjct: 493 AIVKRLI 499 >gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis HH22] gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis HH22] Length = 513 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEMPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 484 >gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis ST3] gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus suis ST3] Length = 481 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 135/485 (27%), Positives = 220/485 (45%), Gaps = 76/485 (15%) Query: 25 WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + + + +S DSR + +F A + KE F+ +AI G V Y + Sbjct: 30 WTDVQFDALSYDSRTVSPTTLFFAKGLAFKKE----FLEKAIEAGLAFYVSEIDYEV--- 82 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139 + P ++V + ++ +SL A +G HP+ +LA TGT GK++ A F I ++ Sbjct: 83 ------DIPAIIVHDIKQAMSLIAMEFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135 Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 S + +T+ +F + + LTTP + L ++ G++H+ +E SS Sbjct: 136 SHKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMSHLIMEVSSQAYLVK 194 Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G+ G F N+ DHI H T + YF K LL S A+I Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313 NAG V + ++ Q++ S G DF L G + + Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294 Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361 NA+ A C+ +G LE +H VPGR E V T G +++VD Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNP 420 YAH +S++ ++ + +G++ ++ G G++ + +R G + D I I+T D+P Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADDP 406 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIV 475 EDP E+IRA + FI +R EAIRTA+ + + +D +++AGKG + IV Sbjct: 407 NREDPAAIAEQIRAHMTRP-SNFIL--DREEAIRTAMSQTSSTKDAVIIAGKGADAYQIV 463 Query: 476 TNGEK 480 NGEK Sbjct: 464 -NGEK 467 >gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1071] gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E1679] gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium U0317] Length = 501 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 492 Query: 487 DIIREIL 493 I++ ++ Sbjct: 493 AIVKRLI 499 >gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX0104] gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0470] gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX0104] gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0470] gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0309B] gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0309A] Length = 513 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486 >gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol] gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol] Length = 508 Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479 >gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 485 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 128/488 (26%), Positives = 231/488 (47%), Gaps = 51/488 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+F E+I + S + + +++S DSR +F + G G ++ A+ QG Sbjct: 15 KNFREVIAEDSYY-YHYTGLNFSKLSYDSRDADNQTLFF-VKGANFKGE-YLQSALNQGL 71 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSG 125 +A + Y + P ++V++ + +S+ A Y +P++ +LA TGT G Sbjct: 72 QAYISEVDYEV---------GIPAIIVNDIKHAMSIIAMAFY-DNPQDKLKLLAFTGTKG 121 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 K++ A F I ++S ++ +T+ +F + ++LTTP + L K ++ S G+T Sbjct: 122 KTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFK-SQLTTPESLDLFKMMAECVSNGMT 180 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKE 241 H+ +E SS R+ G+ G F N+ DHI H + YF K LL + Sbjct: 181 HLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPNFEDYFYHK-----RLLMEN 235 Query: 242 SPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 S A+I D ++V K+ H+ F +I + Q T Sbjct: 236 SRAVIINSDMDHFHILKEQVAKQDHD-------------FYGQASDNSITDSQAFTFKAT 282 Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 GK ++ L G F NA+ A C+ +G + + + + VPGR E V + G Sbjct: 283 GKLAGNYRTLLIGRFNQENAIAAGLACLRLGASHEDIQKGIAQT-TVPGRME-VLNHPCG 340 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 +++VDYAH +SLE ++ + G+I ++ G G++ + +R K+ + +++++ Sbjct: 341 AKVFVDYAHNGDSLEKLVSVVEEHQKGQITLIIGSTGNKGESRRADFAKVINNHPNLSVI 400 Query: 416 -TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETV 472 T D+P EDP+ I EI + + + R +AI+ ++ ++D L++AGKG + Sbjct: 401 LTADDPNFEDPQTISEEIASYVSRQLTIEVEREQAIKLGLQSCQEEEDALIIAGKGADAY 460 Query: 473 HIVTNGEK 480 IV NG+K Sbjct: 461 QIV-NGQK 467 >gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,501] gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6] Length = 509 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 47 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 94 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 151 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 381 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500 Query: 487 DIIREIL 493 I++ ++ Sbjct: 501 AIVKRLI 507 >gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1341] Length = 516 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487 >gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri DSM 20016] gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri JCM 1112] gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM2-3] gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM4-1A] gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri DSM 20016] gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Lactobacillus reuteri JCM 1112] gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM2-3] gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri MM4-1A] Length = 516 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 145/508 (28%), Positives = 233/508 (45%), Gaps = 75/508 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88 VS DSR +++G +F GN F+P+ +A +GA A V Y + Sbjct: 32 VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++ +K +SL + YG +P+N I+A+TGT GK++ A F I +S ++ Sbjct: 78 GLPAIIVNDEQKAMSLLGAAFYG-YPQNDLFIIAITGTKGKTTTAYFADHILAQS--TAD 134 Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 I ST+ F D LTTP + L + G+TH+ +E SS + Sbjct: 135 HIALFSTLDRILGNKPEDKFKSD--LTTPESLDLFHDMRVAVDNGMTHLVMEVSSQAYKK 192 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249 +R+ G+K G F N+ DHI + H T Y + K E+LL + +I A+ Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFT 248 Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298 D Y +++ A L Q F + + +H + ++ K Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 D + +PG++ NA ++A+GL A D+ L H+ + GR E + +N Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH----IRGRMEMINSN 364 Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410 + G IYVDYAH SL+ +L + R +G++ VV G GD+ +RP GK + + Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQP 423 Query: 411 DIAIVTDDNPRSEDPEKIRAEII----HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465 D I+T D+P EDP I EI H I+ + +R AI+ AI+ D++V+A Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSENDDIVVLA 483 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + V + D I R+ + Sbjct: 484 GKGEDPYQKVNGEDVPYPTDVKIARDYI 511 >gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1087] Length = 481 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 139/464 (29%), Positives = 220/464 (47%), Gaps = 50/464 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR A +F V + F+ +A+ G + S DF I P+ Sbjct: 38 ISYDSREADASTLF--FVKGEAFKREFLEKAVTAGLRFYI-----SETDFQVGI----PV 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 87 LLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALLSTM 145 Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ G Sbjct: 146 NTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTFDVG 204 Query: 208 SFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 F N+ DHI H T + YF K LL S A+I +++K Sbjct: 205 VFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE------ 253 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLC 322 +V S+ + F I + Q + GK +D L G F NA+ A C Sbjct: 254 QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAGLAC 309 Query: 323 IAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +G LE ++K VPGR E V T G +++VDYAH SL +L ++ Sbjct: 310 LRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVQEH 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI I Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424 Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 +EK +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 425 PVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis AR01/DG] gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ARO1/DG] Length = 508 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479 >gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,231,502] Length = 509 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 226/487 (46%), Gaps = 51/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 47 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 94 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 210 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 264 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 265 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 322 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 323 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 380 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 381 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 440 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ D Sbjct: 441 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDY 500 Query: 487 DIIREIL 493 I++ ++ Sbjct: 501 AIVKRLI 507 >gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis ATCC 29200] gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0102] gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis ATCC 29200] gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0102] gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis OG1RF] Length = 513 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 49/469 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +++G EAI A+ + D +V+AGKG + Sbjct: 441 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 486 >gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1057] Length = 481 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A+ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGETFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDYFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NA+ A Sbjct: 254 ---QVASL--EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis V583] gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1] gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis PC1.1] gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Enterococcus faecalis V583] gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1] gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis PC1.1] Length = 508 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479 >gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15] Length = 509 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 55/489 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 47 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 94 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + ++ G+TH+ +E SS R+ G Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 210 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + +++K Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 265 Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309 + ++ ++ Y + IH K H + +Q +++ +D L L G Sbjct: 266 TADL-FQIPTITYGRSEKSNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 320 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA A G S L++ V PGR + + S G +YVDYAH SL Sbjct: 321 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSL 378 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +L+ + GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI Sbjct: 379 KTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKI 438 Query: 429 RAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ Sbjct: 439 AEEINEAITNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKGVDPYQKINGVDEPYEG 498 Query: 485 DCDIIREIL 493 D I++ ++ Sbjct: 499 DYAIVKRLI 507 >gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 127/256 (49%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N+ TT S I + + LS + + T ++E SSH L QHR+ + A FTNLGRDH+DY Sbjct: 6 NQNTTASAIEVQQILSNMLAHKATFAAMEVSSHALVQHRVAALTFAATVFTNLGRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF K+ II DD + + + NA + G+QG Sbjct: 66 HGDMVTYEAAKKSLFFGHESKKH--IINVDDEVGQRWLPQLPNAVAVSTAHHIPSGWQGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + L G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2137] gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0031] gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0043] Length = 516 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +++G EAI A+ + D +V+AGKG Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 487 >gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0860] gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0860] Length = 516 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487 >gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis T8] gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188] gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis T8] gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188] Length = 506 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 495 GDFALAKMII 504 >gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2] gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2] Length = 480 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 60 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 348 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 408 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 453 >gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecium TX1330] gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium PC4.1] Length = 501 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 139/490 (28%), Positives = 230/490 (46%), Gaps = 57/490 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + ++ G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + +++K Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 257 Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309 + ++ ++ Y + IH K H + +Q +++ +D L L G Sbjct: 258 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 312 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNS 368 F NA A G S L++ V PGR + + TN G +YVDYAH S Sbjct: 313 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQLIQTN--GAHVYVDYAHNYLS 369 Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +L+ + GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+K Sbjct: 370 LKTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQK 429 Query: 428 IRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI I P I + +R EAIR A+ QD +V+AGKG + + ++ Sbjct: 430 IAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYE 489 Query: 484 VDCDIIREIL 493 D I++ ++ Sbjct: 490 GDYAIVKRLI 499 >gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium 1,141,733] gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12] Length = 509 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 139/490 (28%), Positives = 230/490 (46%), Gaps = 57/490 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 47 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 93 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 94 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 150 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + ++ G+TH+ +E SS R+ G Sbjct: 151 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVYG 210 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + +++K Sbjct: 211 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 265 Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309 + ++ ++ Y + IH K H + +Q +++ +D L L G Sbjct: 266 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 320 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNS 368 F NA A G S L++ V PGR + + TN G +YVDYAH S Sbjct: 321 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQLIQTN--GAHVYVDYAHNYLS 377 Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +L+ + GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+K Sbjct: 378 LKTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQK 437 Query: 428 IRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I EI I P I + +R EAIR A+ QD +V+AGKG + + ++ Sbjct: 438 IAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYE 497 Query: 484 VDCDIIREIL 493 D I++ ++ Sbjct: 498 GDYAIVKRLI 507 >gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecium E980] Length = 501 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 138/489 (28%), Positives = 229/489 (46%), Gaps = 55/489 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + ++ G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + +++K Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYF--DLLKE 257 Query: 260 AHNAGCRVLSVGY------QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGE 309 + ++ ++ Y + IH K H + +Q +++ +D L L G Sbjct: 258 TADL-FQIPTITYGRSEESNYQVIHSDK--GTHGFTLSSRQDHLAICDTAYDIL--LAGG 312 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NA A G S L++ V PGR + + S G +YVDYAH SL Sbjct: 313 FNQENAASAIIAAALTGASSQDAQAGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSL 370 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +L+ + GR+IVV G G++ +R GK+ + AD+A +T D+P EDP+KI Sbjct: 371 KTLLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKI 430 Query: 429 RAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484 EI I P I + +R EAIR A+ QD +V+AGKG + + ++ Sbjct: 431 AEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEG 490 Query: 485 DCDIIREIL 493 D I++ ++ Sbjct: 491 DYAIVKRLI 499 >gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6] gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis X98] gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6] gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus faecalis X98] Length = 508 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +++G EAI A+ + D +V+AGKG Sbjct: 436 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 479 >gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX1322] gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0411] gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis TX1322] gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0411] Length = 511 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 500 GDFALAKMII 509 >gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein [Enterococcus faecalis 62] Length = 506 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 495 GDFALAKMII 504 >gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0017] Length = 516 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 49/467 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 I+A I +P + +++G EAI A+ + D +V+AGKG Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKG 487 >gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 196 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 4/173 (2%) Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G F VYN L A A+ I + LE + V GRFE V + + VDYAHT + Sbjct: 3 GNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNA-GQAFPVIVDYAHTPD 61 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L +L+ I R+ VV GCGGDRD+GKRP M KIA+D + I T DNPRSE+P Sbjct: 62 GLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENPHA 121 Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 I ++I G+P ++ NR +AIR A+ DV+++AGKGHE ++ + Sbjct: 122 IIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD 174 >gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK405] gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK678] gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1] gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK408] Length = 481 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F Q +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQTLSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANNRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I D +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSDMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + V GK +D L G F NA+ A Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDI--QLIGHFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + +++ D +++AGKG + I+ GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQII-EGEK 467 >gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC 4200] gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC 4200] Length = 508 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 481 >gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2134] gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0635] gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2134] gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0635] gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4000] gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0312] gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0645] gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0630] Length = 514 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 227/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 502 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 503 GDFALAKMII 512 >gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC 29799] gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC 29799] Length = 507 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 222/486 (45%), Gaps = 39/486 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE--AIVVSSAYSLQDFSAT 85 R++ VS DS+ + G +F+ G F PQ + AE A V S + + Sbjct: 36 REVRLVSCDSQTVVPGTLFIC------KGAAFKPQYLLDAAEKGAFVYVSERRWPECA-- 87 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R+ ++L A R + HP L +TGT GK++ A F++ + Sbjct: 88 ----LPCILVSDIRRSMALLADRAW-NHPSGRLHITGITGTKGKTTTAYFLKSMLDEWRR 142 Query: 143 SSFQIGPTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 S + ++ +S+ D+ +LTTP P+ L + L + G ++++E SS L Sbjct: 143 SQGK-RESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNAAECGAEYLTMEVSSQALK 201 Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 HR G++ G F N+G DHI H + YF +K+ +F + + A + D ++ Sbjct: 202 YHRTGGVEFSVGVFLNIGEDHISPVEHPDFEDYFASKLMIFRQ----SAAACVNLDSDFA 257 Query: 254 KEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++ A + S + I+ ++ + + + + LPG F V Sbjct: 258 ERILTAAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPRYTRELSMGLPGSFNV 317 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A A+G+ + V L + VPGR E T + VDYAH SLE + Sbjct: 318 ENALAAVAAAEALGVPESAVAAGLAEA-TVPGRMETFNTPDGKLTVIVDYAHNGMSLEAL 376 Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L ++R GR + V+FGC G + +R MG+ A AD I+T+D+P E+ I A+ Sbjct: 377 LSSVRREFPGRQLTVLFGCTGGKGLDRREGMGQAAGRWADRIILTEDDPGPEEVPDICAD 436 Query: 432 IIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 I I F + +R EA+ AI + V+V+AGKG E NG + D Sbjct: 437 IGGYIAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKGAEQQQKRKNGPEPCVPDSL 496 Query: 488 IIREIL 493 + R L Sbjct: 497 LARRAL 502 >gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G QG Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + + PL G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQAIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 317 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 154/325 (47%), Gaps = 21/325 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 FNLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 60 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 61 -AYEVEGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 119 Query: 133 VQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 V Q + QR G+ +G T Q R TTP PI + L+ L G V++ Sbjct: 120 VAQALDVLGQRCGI----VGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAM 175 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SSHGLDQ R + TNL RDH+DYH T +AY AK +LF +I Sbjct: 176 EVSSHGLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSDLKCRVIN 233 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306 DD + +E+ + S +++ + + + T ++ +G+ F L Sbjct: 234 LDDDFGRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSL 292 Query: 307 PGEFQVYNALVAAGLCIAIGIDSAL 331 G F + N L A G +G+D AL Sbjct: 293 LGRFNLSNVLAAVGAL--LGLDYAL 315 >gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK72] Length = 481 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 219/467 (46%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A+ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLELIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK ++D L G F NA+ A Sbjct: 254 ---QVASL--EHDFYGADSSNTIKDSQAFSFEATGKLAGNYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLRNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + ++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467 >gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3] gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3] Length = 480 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 9 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 59 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 60 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 117 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 118 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 175 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 176 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 231 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 290 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 347 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 348 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 407 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 408 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 453 >gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1058] gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1059] Length = 481 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F Q +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQTLSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANNRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I D +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSDMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + V GK +D L G F NA+ A Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDI--QLIGHFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + +++ D +++AGKG + I+ GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQII-EGEK 467 >gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N+ TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G QG Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus sanguinis SK36] gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase, putative [Streptococcus sanguinis SK36] Length = 481 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 138/467 (29%), Positives = 220/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSVGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFTYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK ++D L G F NA+ A Sbjct: 254 ---QVASL--EHDFYGADSSNTIKDSQAFSFEATGKLAGNYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLRNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + ++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467 >gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [Enterococcus faecium D344SRF] Length = 485 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 134/462 (29%), Positives = 216/462 (46%), Gaps = 51/462 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 ++S DSR A +F N KE+ ++ AI QG + V Y N+ Sbjct: 39 QLSYDSRKADASTLFFCKGMNFKEE---YLDSAIEQGIQYYVSEQPYE----------NS 85 Query: 91 PI-LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQ 146 + ++V + RK ++L A Y +P+N L V TGT GK++ A F + I + ++ + Sbjct: 86 AVGIIVTDIRKAMALLAMAFY-DYPQNKLKVIGFTGTKGKTTAAYFTKAILDHT--TNKK 142 Query: 147 IGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 ST+++ + LTTP + L + +S G+TH+ +E SS R+ G Sbjct: 143 TALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVYG 202 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + L G F N+ DHI H T YF K +L +L ++ + + D + + R Sbjct: 203 LTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQL---ILNSKTVVLNHESDYFD---LLR 256 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ ++ Y + + ++ H + + +++ +D L L G F Sbjct: 257 ETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDIL--LAGGFN 314 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA A G S + L++ V PGR + + S G +YVDYAH SL+ Sbjct: 315 QENAASAIIAAALTGASSQDAQDGLKEARV-PGRMDQL-IQSNGAHVYVDYAHNYLSLKT 372 Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 +L+ + GR+IVV G G++ +R GK+ + ADIA +T D+P EDP+KI Sbjct: 373 LLEFAKNEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAE 432 Query: 431 EIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 EI I P I + +R EAIR A+ QD +V+AGKG Sbjct: 433 EINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474 >gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK1056] Length = 481 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI ++ + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQNHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I + +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNNGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NA+ A Sbjct: 254 ---QVASM--EHDFYGAGSSNTIIDSQAFSFEAAGKLAGRYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +I+VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I +EK +R EAI+ A+ + ++ D +++AGKG + IV GEK Sbjct: 422 ISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467 >gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0109] gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0109] gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1302] Length = 516 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGITAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 444 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 489 >gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX4244] Length = 516 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 131/469 (27%), Positives = 220/469 (46%), Gaps = 49/469 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 428 ---IRAEIIHGIPGF--IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +++G EAI A+ + D +V+AGKG + Sbjct: 444 CQEIQAHITKEMPVYTILDRG---EAIAHALSLSTTADDAIVLAGKGAD 489 >gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia heliotrinireducens DSM 20476] gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia heliotrinireducens DSM 20476] Length = 493 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 134/498 (26%), Positives = 222/498 (44%), Gaps = 55/498 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ--AIAQGAEAIVVSSAYSLQDFSA 84 E + ++ DSR + G +FV G F PQ A A A + + A Sbjct: 14 EATVQGMTIDSRKAEPGCLFVC------KGAAFKPQYLGGALDAGAAAYLCDAAAEATLA 67 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSG 141 P +V D+ R+ ++L A+ ++ + P+ +++ +TGT GKS+ A ++ I +G Sbjct: 68 QAYPQAPHIVTDDVRRAMALLAAVVFDR-PDLKIDVVGITGTKGKSTTAYMMRSILIAAG 126 Query: 142 LSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G T + F N TTP L + L+ G + + +E SSHGL R Sbjct: 127 QEPSILGSIDTDDGVEHFESHN--TTPEAPDLWRHLANTVEAGRSRMVMEVSSHGLKYDR 184 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 G++ G F N+GRDHI H T + YF +K++LF + A++ + + +V Sbjct: 185 TLGVRFAIGCFLNIGRDHISPVEHPTFEDYFESKLKLF----AQSRTALVNLNSDMADQV 240 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------L 306 ++ A A ++++ G + + A N + + +G F P + Sbjct: 241 LE-AAKASEQLVTFG-------VGRDDADWNAADLAVEPQGIAFTVCTPTGERERIVLGM 292 Query: 307 PGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 G F V NAL A + +G+ D L H+ VPGR E V + VDYA Sbjct: 293 AGLFNVENALAAVVMSRMLGVTWDDIRAGLAHVR----VPGRMEVVRSADGSVVALVDYA 348 Query: 364 HTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H S + +++ GR +I VFG G++ Q +R + ++A AD I T+++P Sbjct: 349 HNELSFKTFFSSVKEEYPGRKVIAVFGAPGNKAQERRVTLPRVAAGFADHMIFTEEDPAY 408 Query: 423 EDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVT 476 E E I AE++ P +R A + A +M + + V+ + KG ET Sbjct: 409 ERVEDICAEMMASTPAGASAEVICDREAACKRAFDMAFEAENGAVVALLAKGDETRQHRG 468 Query: 477 NGEKKMSVDCDIIREILG 494 + ++ D I REILG Sbjct: 469 DEFPEVKSDLAIAREILG 486 >gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae P1031] gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae P1031] Length = 481 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHSSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 315 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 151/321 (47%), Gaps = 13/321 (4%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 N IF R+ I E++ SR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 3 FNLSKIFAHTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV--- 59 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV Sbjct: 60 -AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQL 118 Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 V Q G +G T Q R TTP PI + L+ L G V++E SS Sbjct: 119 VAQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSS 178 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 HGLDQ R + G TNL RDH+DYH T +AY AK +LF +I DDA Sbjct: 179 HGLDQGRATALAFDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDA 236 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEF 310 + +E+ + S +++ + + + T ++ +G+ F L G F Sbjct: 237 FGRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRF 295 Query: 311 QVYNALVAAGLCIAIGIDSAL 331 + N L A G +G+D AL Sbjct: 296 NLSNVLSAVGAL--LGLDYAL 314 >gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G QG Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0012] Length = 513 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 130/465 (27%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP--- 425 + +L +R GR+IV+ G GD+ +R G + +LAD+A++T D+P SEDP Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVAVLTTDDPASEDPAEI 440 Query: 426 -EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 ++I+A I +P + +R EAI A+ + D +V+AGKG Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 484 >gi|94269093|ref|ZP_01291368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium MLMS-1] gi|93451353|gb|EAT02221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [delta proteobacterium MLMS-1] Length = 326 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 53/297 (17%) Query: 225 AYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHN-AGC----------------- 265 +YF AK RLFE+ L P + + A+ A + + KRA + AGC Sbjct: 1 SYFAAKKRLFEQHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLR 60 Query: 266 -----------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 R+ G+ + L + N + ++ +++ PL G+F + N Sbjct: 61 LCGQTAAGRAPRLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLN 120 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMIL 373 L A +A+ + + L PGR E FV + RG +++VDYAHT +LE +L Sbjct: 121 LLGVAATGLALEMSPEAIAAALAVAPPPPGRLERFV--DRRGMKVFVDYAHTPAALEQVL 178 Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + +R S R+IV+FGCGGDRD+GKR MG+IA LADI ++T DNPR+E+P I A I Sbjct: 179 RTLRP-HSRRLIVIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILATIE 237 Query: 434 HGIPGFIEKGNRIEAI-----RTAIEML--------------NKQDVLVVAGKGHET 471 G+ G + R+EA+ R ++L + DV+V+ GKGHET Sbjct: 238 AGVKGTGLQRCRLEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHET 294 >gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA41317] Length = 481 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 142/510 (27%), Positives = 235/510 (46%), Gaps = 58/510 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS HR+ G+ G F N+ DHI H + + YF K L E Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRLLME- 234 Query: 237 LLPKESPAIIYAD-DAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 II +D D +S ++V + H+ Y +F + I N + + Sbjct: 235 ---NSRAVIINSDMDHFSVLREQVEDQDHDF--------YGSQFDN-----QIENSKAFS 278 Query: 293 ISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRF 346 S GK D+D L G F NA+ A C+ +G LE ++K VPGR Sbjct: 279 FSATGKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRM 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E V T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 333 E-VLTQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLL 391 Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLV 463 +I + +T D+P EDP I EI + I +EK +R EAI+ A+ + N + D ++ Sbjct: 392 NQHPEIQVFLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVI 451 Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +AGKG + I+ ++ D + L Sbjct: 452 IAGKGADCYQIIQGKKESYPGDTAVAENYL 481 >gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TX1467] Length = 511 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 132/491 (26%), Positives = 226/491 (46%), Gaps = 47/491 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I ++ Sbjct: 93 PAQLGIIVTD-IKKAMAVLSIAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILD---VA 147 Query: 144 SFQIGPTSTISSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + QI + + D + LTTP + L + ++ + G+TH +E SS + Sbjct: 148 TQQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTN 207 Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSK 254 R+ + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 208 RVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFP 262 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPG 308 + + A + G Q + A+ ++ + VE G + L G Sbjct: 263 LLKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGG 321 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +S Sbjct: 322 DFNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDS 379 Query: 369 LEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 380 LKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAK 439 Query: 428 ----IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ Sbjct: 440 ICQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPY 498 Query: 483 SVDCDIIREIL 493 + D + + I+ Sbjct: 499 AGDFALAKMII 509 >gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX1346] Length = 516 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 217/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 45 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 95 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 96 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 154 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 211 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 212 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 266 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 267 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 325 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 326 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 383 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI Sbjct: 384 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 443 Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 E I +P + +R EAI A+ + D +V+AGKG Sbjct: 444 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 487 >gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae R6] gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae D39] gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP23-BS72] gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase; AltName: Full=L-lysine-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase [Streptococcus pneumoniae R6] gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae D39] gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP23-BS72] gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase [Streptococcus pneumoniae INV104] gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae GA17545] Length = 481 Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 141/506 (27%), Positives = 230/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis HIP11704] gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis HIP11704] Length = 508 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKVGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIIYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 481 >gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii OhILAs] Length = 501 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 127/474 (26%), Positives = 218/474 (45%), Gaps = 57/474 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V+SDSR ++ G+IFVAI G KEDG+ FI +A+ +GA I + ++D I Sbjct: 7 EIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKD---CIVK 63 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLSSF 145 P + RK L ++ YG +P + L V G +G + + + I + SG + Sbjct: 64 KVP-----DCRKELGNLCNQFYG-YPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAG 117 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG I + ++LTTP + L+ + +GVT +E SSHGL +R+ GI Sbjct: 118 LIGTLFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDF 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-------SKEVM 257 TN+ DH+++H+ Y N+K +LF+ L + A+I DD Y KE++ Sbjct: 178 DIAIHTNINWDHLNFHKNINDYVNSKKKLFDS-LSEGKVALINHDDQYGIKMLEGKKEIL 236 Query: 258 KRAHNAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFP----L 306 + + + G+ F + C Q+ ++EG + + F +P L Sbjct: 237 AITYGLSSKSTVTASSIDFGFTTSFTY----CL----QRGITTLEGVEIEAFEYPVTSNL 288 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G +YNAL+A C+ + I +++ ++ V R + + + + DY H Sbjct: 289 IGNHNIYNALLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQIIYRDKF--TVIDDYCHNP 346 Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRD---QGKRPIMGKIALDLADIA--IVTDD--- 418 +S E + I+ + + +V G G+R K + K D+ +I ++TD Sbjct: 347 SSYEAVFNAIQNLQYNNLHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDF 406 Query: 419 ----NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 N E+ + I E+ + IP E+ R +AI I L + D+L++ G Sbjct: 407 IDPMNSALEEEKNICFEVFNSSAIPFQYERNLR-DAIEEGIRDLRQGDILLLLG 459 >gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0855] gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX0855] Length = 513 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 218/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKVGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIIYGSQPA-SEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 I+A I +P + +R EAI A+ + D +V+AGKG + Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486 >gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri NRRL B-30929] gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri NRRL B-30929] Length = 511 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 130/500 (26%), Positives = 227/500 (45%), Gaps = 58/500 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++S +S+ + +F GN + +L A GA A + Y + Sbjct: 31 FDQISYNSKSVTDNCLFFC-KGNFKSAYL--DDARQNGATAYMSEKTYQ--------NAG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P ++V N +K +SL ++ +G P++ L A TGT GK++ A F + I ++ + Sbjct: 80 IPGIIVKNIQKAMSLVSAAFFG-FPQDQLPTIAYTGTKGKTTSAYFTKAILDQT--YQRK 136 Query: 147 IGPTSTISSFA----QD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + +STI++ +D + LTTP + L + + G++H+ +E SS ++R+ Sbjct: 137 VALSSTINTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRV 196 Query: 200 DGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G+ G F N+ DHI + H T Y + K E+LL ++ AD + ++ Sbjct: 197 YGLHYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSDVCVLNADGTHLTDIF 252 Query: 258 --KRAHNAGCRVLSVGYQGKFIHLK----------KVCAIHNKQQVTI-SVEGKDFD--- 301 +A + G G+ + K N+ QVT + + K + Sbjct: 253 YAAKATTQPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDG 312 Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + +PG++ NA+ AA +G + L VPGR E T+ G +YV Sbjct: 313 VYRIGIPGDYNEGNAVAAAITSALMGAKPTEIAYGLANT-TVPGRMEIYQTHDHG-TVYV 370 Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 DYAH SL +L ++ +G++ V+ G GD+ +R +GK + AD A +T D+ Sbjct: 371 DYAHNYGSLHSVLDFLKKQAPNGKVTVITGSTGDKGIDRREGLGKAINEAADQAYLTTDD 430 Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 P +EDP++I EI I +I +R +AI A+ K D++VVAGKGH+ Sbjct: 431 PATEDPQQIAKEIAAHIDTSKVATTYIP--DRKQAITKAVSESQKGDLVVVAGKGHDQYQ 488 Query: 474 IVTNGEKKMSVDCDIIREIL 493 + D I++ ++ Sbjct: 489 KINGKNVPYEGDAAIVKNLV 508 >gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK160] Length = 481 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 144/494 (29%), Positives = 229/494 (46%), Gaps = 53/494 (10%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F +++ F + + +S DSR A +F V + F+ + Sbjct: 9 DILKKDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLF--FVKGEAFKKEFLEK 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILA 119 A+ G + S DF I P+L+V++ ++ +SL A YG HPE +LA Sbjct: 66 AVTAGLRFYI-----SETDFQVGI----PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK++ A F QI +S + +T+ +F + + LTTP + L K ++ Sbjct: 116 FTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFK-STLTTPESLDLIKMMAQA 174 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 + TH+ +E SS + R+ G+ G F N+ DHI H T + YF K Sbjct: 175 LANDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNK----- 229 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LL S A+I +++K +V S+ + F I + Q + Sbjct: 230 RLLMDHSRAVIVNSGMDHFQIVKE------QVASM--EHDFYGAGSSNTITDSQAFSFEA 281 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFV 349 GK +D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 282 AGKLAGHYDI--QLIGHFNQENAVAAGLACLRLGAS----LEDIKKGIATTRVPGRME-V 334 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T G +I+VDYAH SL +L + G+II++ G G++ + +R G + Sbjct: 335 LTQKNGAKIFVDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQH 394 Query: 410 ADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAG 466 ++ ++ T D+P EDP I EI I +EK +R EAI+ A+ + ++ D +++AG Sbjct: 395 PELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAG 454 Query: 467 KGHETVHIVTNGEK 480 KG + IV GEK Sbjct: 455 KGADAYQIV-EGEK 467 >gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema pallidum subsp. pallidum SS14] gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum subsp. pallidum str. Chicago] Length = 540 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 132/495 (26%), Positives = 209/495 (42%), Gaps = 67/495 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR ++ G +F A+ G G +I AI GA AIV T Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVVG 79 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V + R LS A+ Y ++ VTGT GKSS SF+ Q+ + G ++ Sbjct: 80 VYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGK---RV 136 Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199 G ST+ D+ L TTP + + + L+ + +EASSHGL RL Sbjct: 137 GFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARL 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---------SPAIIYADD 250 + N+ +H+++H + + Y K +F L + S +++A+D Sbjct: 197 QDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAED 256 Query: 251 A---YSKEV-------MKRAHNA-----------GCRVLSVGYQGKFIH-LKKVCAIHNK 288 A Y +E KR A C +L V + L+ + Sbjct: 257 ASAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTV 316 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNA----LVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 Q+ + D PL G F N LV GL +G A +H++ + + G Sbjct: 317 QEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGL---LGTSLAAFAQHVQYVQPIQG 373 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPI 401 R + V + + +DYAHT +S E IL + R ++V+FG G+RD KR + Sbjct: 374 RMQRVDMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAM 432 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEM 455 G IA A + ++TD++PR EDP I I G +R+ A+R + Sbjct: 433 QGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492 Query: 456 LNKQDVLVVAGKGHE 470 QD++++ GKGHE Sbjct: 493 ARAQDLVLLLGKGHE 507 >gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084] gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084] Length = 532 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 131/493 (26%), Positives = 218/493 (44%), Gaps = 42/493 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSRH G +FV GN ++ QA+A G + A + + A P Sbjct: 47 VDCDSRHAAPGHLFV-CKGNAFRAS-YLAQALAAGCVGYLCDEARAGE--LAAHCPQVPR 102 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQ------RSGLS 143 LV + R+ ++L ++ +G HP+ +L +TGT GKS+VA ++ I R Sbjct: 103 LVSHDLRRAMALVSAEAWG-HPDRNLGVLGITGTKGKSTVAYMLRSILDSDADGTRGAPH 161 Query: 144 SFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G T ++ + TTP L + L ++ G++H+ +E SS L R+ G+ Sbjct: 162 TGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAATSGLSHMVMEVSSQALKYDRVVGL 221 Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 L F N+G DHI H + + YF +K+R+F++ A++ D + +++RA Sbjct: 222 GLDVACFLNIGCDHISPVEHPSFEDYFESKLRIFDQ----ACVAVVNLDSDKADVILERA 277 Query: 261 HNAGCRVLSVGYQGKF------------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 G R ++ G+ + + + + + Q+ + +PG Sbjct: 278 ARCG-RTVTFSATGQGAGGAPAGAGGADVWAEGISSREGRIQMMVRTPSWSEPVTVSMPG 336 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F NAL A +C A GI V+ L ++ VPGR E + T VDYAH S Sbjct: 337 LFNADNALAAIAICEACGIGRERVVAGLARVR-VPGRMELLPTADPKVTGIVDYAHNKLS 395 Query: 369 LEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + ++ +GR II V G G + +R + + A AD I T+++P + E+ Sbjct: 396 YQRFFSSMAQEFAGRAIIAVLGAPGGKAYERRRELPQEASKWADYLIYTEEDPAGDPVEE 455 Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEML--NKQDVLV-VAGKGHETVHIVTNGEKK 481 I +++ P F +R AIR A+E+ Q LV + KG ET+ V N Sbjct: 456 ICSQLAAATPAGQDFEVIVDRPAAIRRAVELAFGYPQGALVCLLAKGDETLQHVGNSFVP 515 Query: 482 MSVDCDIIREILG 494 D + +G Sbjct: 516 CETDGTLFERAVG 528 >gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis TX2141] Length = 511 Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 133/490 (27%), Positives = 226/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 42 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 93 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + V G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 381 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 441 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 499 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 500 GDFALAKMII 509 >gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TUSoD Ef11] gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Enterococcus faecalis TUSoD Ef11] Length = 506 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 133/490 (27%), Positives = 226/490 (46%), Gaps = 45/490 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R++ +S DSR + A +F N ++ +++ A+ G E V Y + Sbjct: 37 QREVTALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYE-------V 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 + I+V D +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 88 PAQLGIIVTD-IKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ + + V G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-PEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427 + +L +R GR+IV+ G GD+ +R G++ +LAD+A++T D+P SEDP K Sbjct: 376 KNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 428 ---IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMS 483 I+A I +P + +R EAI A+ + D +V+AGKG + V ++ + Sbjct: 436 CQEIQAHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYA 494 Query: 484 VDCDIIREIL 493 D + + I+ Sbjct: 495 GDFALAKMII 504 >gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G +G Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase [Candidatus Hamiltonella defensa] Length = 258 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 124/256 (48%), Gaps = 7/256 (2%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 N TT S I + + LS + + T ++E SSH L QHR+ + A F+NL RDH+DY Sbjct: 6 NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGK 275 H Y AK LF + K II DD + + NA + G +G Sbjct: 66 HGDMANYEIAKKSLFLDHESKNH--IINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGA 123 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ +K+ N + + PL G F V N L+ +A+ +L+ Sbjct: 124 WLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKA 183 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 KL +PGR E R + VDYAHT ++L+ L R G++ +FGCGGDRD Sbjct: 184 ASKLQPIPGRMEVFKKVGRP-TVIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRD 242 Query: 396 QGKRPIMGKIALDLAD 411 +GKRP+MGKIA LAD Sbjct: 243 KGKRPLMGKIAETLAD 258 >gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi] Length = 523 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 132/495 (26%), Positives = 209/495 (42%), Gaps = 67/495 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DSR ++ G +F A+ G G +I AI GA AIV T Sbjct: 26 VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVVG 79 Query: 90 TPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V + R LS A+ Y ++ VTGT GKSS SF+ Q+ + G ++ Sbjct: 80 VYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGK---RV 136 Query: 148 GPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199 G ST+ D+ L TTP + + + L+ + +EASSHGL RL Sbjct: 137 GFISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARL 196 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---------SPAIIYADD 250 + N+ +H+++H + + Y K +F L + S +++A+D Sbjct: 197 QDVAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAED 256 Query: 251 A---YSKEV-------MKRAHNA-----------GCRVLSVGYQGKFIH-LKKVCAIHNK 288 A Y +E KR A C +L V + L+ + Sbjct: 257 ASAVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTV 316 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNA----LVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 Q+ + D PL G F N LV GL +G A +H++ + + G Sbjct: 317 QEPAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGL---LGTSLAAFAQHVQYVQPIQG 373 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPI 401 R + V + + +DYAHT +S E IL + R ++V+FG G+RD KR + Sbjct: 374 RMQRVDMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAM 432 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEM 455 G IA A + ++TD++PR EDP I I G +R+ A+R + Sbjct: 433 QGAIASRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSL 492 Query: 456 LNKQDVLVVAGKGHE 470 QD++++ GKGHE Sbjct: 493 ARAQDLVLLLGKGHE 507 >gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL J1-208] Length = 339 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 38/352 (10%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 8 ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 67 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 68 IAENQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243 SSH L Q R+ G F NL +DH+DYH T Y NAK LF +L Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M+ A A + Q F + I+ G FD Sbjct: 239 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLA 287 Query: 304 FP---------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 P + G F VYN L A A+ I + LE + V G F Sbjct: 288 TPVGEYTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGXF 339 >gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri 100-23] gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri 100-23] Length = 516 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 143/508 (28%), Positives = 230/508 (45%), Gaps = 75/508 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88 VS DSR +++G +F GN F+P+ +A +GA A V Y + Sbjct: 32 VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++ +K +SL + YG +P+N I+A+TGT GK++ A F I +S + Sbjct: 78 GLPAIIVNDEQKAMSLLGAAFYG-YPQNDLFIIAITGTKGKTTTAYFADHILAQS--TDN 134 Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 I ST+ F D LTTP + L + + G+TH+ +E SS + Sbjct: 135 HIALFSTLDRILGNKPEDKFKSD--LTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKK 192 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249 +R+ G+K G F N+ DHI + H T Y + K E+LL + +I A+ Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFI 248 Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298 D Y +++ A L Q F + + +H + ++ K Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 D + +PG++ NA ++A+GL A D+ L H+ + GR E + +N Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVH----IRGRMEMINSN 364 Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410 + G IYVDYAH SL+ +L + R + ++ VV G GD+ +RP GK + + Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNADKVTVVLGATGDKGISRRPGFGKALTEEQP 423 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVA 465 D I+T D+P EDP I EI I K +R AI+ AI+ D++V+A Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGNDDIVVLA 483 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + + + D I R+ + Sbjct: 484 GKGEDPYQKINGEDVPYPTDVKIARDYI 511 >gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis R712] gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis S613] gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 512] gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 516] gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis R712] gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus faecalis S613] gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 512] gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis DAPTO 516] Length = 513 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 45/467 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+I +S DSR + A +F N ++ +++ A+ G E V Y + SA + Sbjct: 42 QREITALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYEV---SAQL 96 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 ++V + +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 97 G-----IIVTDIKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 151 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 208 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 209 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 263 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 264 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 322 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 323 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 380 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +L +R G +IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI Sbjct: 381 KNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 440 Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHE 470 E I +P + +R EAI A+ + D +V+AGKG + Sbjct: 441 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKGAD 486 >gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96] gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 218/465 (46%), Gaps = 45/465 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+I +S DSR + A +F N ++ +++ A+ G E V Y + SA + Sbjct: 37 QREITALSYDSRDVTAETLFFCKGLNFKE--IYLENAVKDGLEIYVSEVPYEV---SAQL 91 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC-----Q 138 ++V + +K +++ + Y +P+N ++ TGT GK++ A F + I Q Sbjct: 92 G-----IIVTDIKKAMAVLSMAFY-DYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQ 145 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 ++ L S + T +F + + LTTP + L + ++ + G+TH +E SS +R Sbjct: 146 KTALLS-TMNSTLDGKTFFK-SALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNR 203 Query: 199 LDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKE 255 + + G F N+ DHI H T YF K +L S I+ +A Y Sbjct: 204 VYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLI-----THSKVIVLNHEADYFPL 258 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGE 309 + + A + G Q + A+ ++ + VE G + L G+ Sbjct: 259 LKETAQQQKVPAIVYGSQPA-SEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGD 317 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 F NAL AA + +G + + VPGR E + TN+ G +YVDYAH +SL Sbjct: 318 FNKGNALSAAIASVLVGASKEECQQGIAAT-TVPGRMESL-TNTNGATVYVDYAHNYDSL 375 Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 + +L +R G +IV+ G GD+ +R G++ +LAD+A++T D+P SEDP KI Sbjct: 376 KNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKI 435 Query: 429 RAE----IIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468 E I +P + +R EAI A+ + D +V+AGKG Sbjct: 436 CQEIQTHITKEMPVYTVL-DRGEAIAHALSLSTTADDAIVLAGKG 479 >gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri CF48-3A] gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri SD2112] gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri CF48-3A] gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri SD2112] Length = 516 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 143/508 (28%), Positives = 233/508 (45%), Gaps = 75/508 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSATIRS 88 VS DSR +++G +F GN F+P+ +A +GA A V Y + Sbjct: 32 VSYDSRKVKSGTLFFC-KGN------FLPKYLASAKEKGAIAYVAEKEYPEGE------- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++ +K +SL + Y +P+N I+A+TGT GK++ A F I +S ++ Sbjct: 78 GLPAIIVNDEQKAMSLLGAAFY-DYPQNDLFIIAITGTKGKTTTAYFADHILAQS--TAN 134 Query: 146 QIGPTSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 I ST+ F D LTTP + L + + G+TH+ +E SS + Sbjct: 135 HIALFSTLDRILGNKPEDEFKSD--LTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKK 192 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249 +R+ G+K G F N+ DHI + H T Y + K E+LL + +I A+ Sbjct: 193 NRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSAKCLINAETEKFT 248 Query: 250 DAY--------SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298 D Y +++ A L Q F + + +H + ++ K Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308 Query: 299 ---DFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 D + +PG++ NA ++A+GL A D+ L H+ + GR E + +N Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVH----IRGRMEMINSN 364 Query: 353 SRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLA 410 + G IYVDYAH SL+ +L + R +G++ VV G GD+ +RP GK + + Sbjct: 365 THG-TIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQP 423 Query: 411 DIAIVTDDNPRSEDPEKIRAEII----HGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465 D I+T D+P EDP I EI H I+ + +R AI+ AI+ D++V+A Sbjct: 424 DEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIVVLA 483 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + + + D I R+ + Sbjct: 484 GKGEDPYQKINGEDVPYLTDVKIARDYI 511 >gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK353] Length = 481 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 217/467 (46%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A+ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVTAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + G TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANGRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I M Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIV------NSGMNHFQI 250 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + Q + GK +D L G F NA+ A Sbjct: 251 VNEQVASM--EHDFYGTGSNNTIIDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +I+VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I ++K +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 422 ISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK330] Length = 481 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 134/464 (28%), Positives = 215/464 (46%), Gaps = 44/464 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHHPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLITMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--Q 254 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 C + F I + Q + GK +D L G F NA+ A Sbjct: 255 VAC------LEHDFYGAGSSNTITDSQAFSFEATGKLAGHYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 C+ +G + + + V PGR E V T G +I+VDYAH SL +L + Sbjct: 307 LACLRLGASLKDIKKGIAATRV-PGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVVEEH 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438 G+II++ G G++ + +R G++ ++ ++ T D+P EDP I EI I Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424 Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 +EK +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 425 PVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici 7_4] gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici 7_4] Length = 507 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 140/494 (28%), Positives = 219/494 (44%), Gaps = 57/494 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR ++ G +F GN E +L A GA V Y T I Sbjct: 32 ITYDSRKVRPGDMFFC-KGNFEPAYL--KAAREAGATTYVAEREYPEG------TGMTAI 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-----QQICQRSGLSS 144 +V + TR L A+ Y + P+N I+ +TGT GK+S A F QQ Q+ L S Sbjct: 83 IVTNVTRAMAVLSAT--YYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFS 140 Query: 145 FQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +GP F D LTTP + L + G+ ++ +E SS + R+ G Sbjct: 141 TIDRIVGPRPE-DQFKSD--LTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYG 197 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K G F N+ DHI + H+ + Y + K+ +L+ II AD ++V Sbjct: 198 LKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYGA 253 Query: 260 AH----------------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A N G + I+ + A + + +++ G ++ Sbjct: 254 AKATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTKPALAITG---EYD 310 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G++ NA A G D L+ L ++ V+PGR E++ G ++VDYA Sbjct: 311 LNVAGDYNQSNATAAIIAAALAGADRDAALKPLNEI-VIPGRMEYLAIPGHG-VVFVDYA 368 Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H SL +LK ++ G+ IVV G GD+ +R GK + AD+A +T D+P Sbjct: 369 HNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGF 428 Query: 423 EDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EDP+ I A+I+ H PG +E +R EAIR AI D++V+AGKG + V Sbjct: 429 EDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGV 488 Query: 479 EKKMSVDCDIIREI 492 + D + +E+ Sbjct: 489 DTPWPTDMGVAQEV 502 >gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group] gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6 -diaminopimelate ligase [Oryza sativa Japonica Group] gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed [Oryza sativa Japonica Group] gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group] Length = 757 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 122/518 (23%), Positives = 243/518 (46%), Gaps = 50/518 (9%) Query: 13 ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ ++ + V D+ + AG ++V + E+G + +A +GA Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A+V D T+ +++VD+ L + + LY + ++ ++ V GT G + Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181 + A V+ + + G+ + +G + ++A +N+L + PI + + ++ + G Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239 +EA++ G+ +D I TN+ + T + Y N+ LF ++ P Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297 + ++ DD S V++ ++ K +H K + +V + Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G +YN L + + +A+G +++ +E++ +PGR E + G Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + VD+A T SL +L ++ + RI+ V GC G+R++GKRP+M K+A + +D+ ++T Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTS 636 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEM 455 DNP +EDP I +++ G+ +E+ G+RI A+R A+ M Sbjct: 637 DNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAM 696 Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 + DV+V+ GKG++T I + +K+ D + RE L Sbjct: 697 GEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 733 >gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Melissococcus plutonius ATCC 35311] gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Melissococcus plutonius ATCC 35311] Length = 510 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 116/428 (27%), Positives = 196/428 (45%), Gaps = 42/428 (9%) Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV---TGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V + +K +++ + Y +P+N L V TGT GK++ A F + I L++ G Sbjct: 93 IIVSDVKKAMAILSMAFYN-YPQNKLKVIGFTGTKGKTTAAYFAKSI-----LTNATKGK 146 Query: 150 TSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 T+ +S+ ++LTTP + L + ++ +TH +E SS R+ Sbjct: 147 TAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFVMEVSSQAYKIDRVYQ 206 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + G F N+ DHI H T YF K +++ I+ + Y + + + Sbjct: 207 LFYDVGIFLNITPDHISPIEHPTFDDYFYCK----RQIIAHSKQIILNRETDYFQLLKET 262 Query: 260 AHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEF 310 A + G Q + + KK + TI E KDF D+ L G+F Sbjct: 263 ADYFNVPTIVYGNQPTTEVDYWYQKKS---QDSLAFTIVAE-KDFLFISGDYQLHLAGDF 318 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NAL A +G + + + +VPGR E + N ++Y+DYAH +SL Sbjct: 319 NKSNALSAVIASSLLGANKKDCQTGINET-IVPGRMELL-KNKNNAQVYIDYAHNYDSLY 376 Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429 +L ++ +GR+IVV G G++ +R G + ADIAI+T D+P EDP+ I Sbjct: 377 HLLSFVKQDHKNGRVIVVIGSTGNKGISRRKDFGAVLSKFADIAILTMDDPADEDPKAIC 436 Query: 430 AEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 EI + I + +R +AI+ A+EM D +V+AGKG + + + D Sbjct: 437 QEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKGADLYQKIKGEDIPYEGDS 496 Query: 487 DIIREILG 494 +I +E++ Sbjct: 497 NIAKELIN 504 >gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC 3537] Length = 469 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 134/491 (27%), Positives = 232/491 (47%), Gaps = 61/491 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 D+R ++ +FV + GN F P+ + A G IV + + + P Sbjct: 4 DTRQVKPNTLFV-VKGN------FNPKYLENAVGITGIVTTKPLDI---------DIPQW 47 Query: 94 VVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ-----RSGLSSF 145 +V NT++ LSL ++ + + P++ L A+TGT GK++ A F I + R+ L S Sbjct: 48 IVSNTQQALSLLSAEFFDR-PQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFST 106 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T +S + + LTTP L K + G+TH+ +E SS + R+ G+ Sbjct: 107 VDRITGPQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFD 166 Query: 206 AGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVM---KR 259 G+F N+ DHI + H T + Y K+ L + S I+ D+ + E+ K+ Sbjct: 167 VGTFLNISPDHIGPNEHPTFEDYLAHKLMLLDH-----SDTIVINDETDHHDEIFSHAKQ 221 Query: 260 AHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFD-------FLFPLPG 308 H AG + + QG ++ + AIH + T+S + K + +PG Sbjct: 222 NHEAGKSLYTYSSNRQNQGDYVFISNDSAIH-ESHFTVSEQHKVEQLSEIIGHYRLNIPG 280 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F NAL A + G +++ L+++ +PGR + S G +VDYAH S Sbjct: 281 DFNESNALAALMIAGFAGAKHQDMVQGLDEV-FIPGRMLSMPIPSHG-VAFVDYAHNYAS 338 Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 + +L ++ +G++IVV G G++ +R GK+ +LAD+ +T D+P+ EDP Sbjct: 339 MHALLSFAQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELADVVFLTADDPQYEDPAD 398 Query: 428 IRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I EI H + F + +RI+AI AI +QD+++VAGKG + + + Sbjct: 399 IANEIACHINNDHVVVHF--EMDRIKAIHAAIASAGEQDIVIVAGKGEDPYQKINGQDVP 456 Query: 482 MSVDCDIIREI 492 D +++++ Sbjct: 457 YIGDYAVVKQL 467 >gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK49] Length = 481 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 221/467 (47%), Gaps = 50/467 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSREADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI ++ + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQNHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V+S+ + F I + Q + GK +D L G F NA+ A Sbjct: 254 ---QVVSM--EHDFYGAGSSNTIIDSQAFSFEAAGKLAGHYDI--QLIGRFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 C+ +G LE ++K VPGR E V T G +I+VDYAH SL +L + Sbjct: 307 LACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKIFVDYAHNGVSLSNLLSVV 361 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHG 435 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI Sbjct: 362 EEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAISEEIASY 421 Query: 436 IPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 I ++K +R EAI+ A+ + +++ D +++AGKG + IV GEK Sbjct: 422 ISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIV-EGEK 467 >gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 481 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 128/479 (26%), Positives = 218/479 (45%), Gaps = 56/479 (11%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + ++ +S DSR + +F A K D ++ +AIA+G V Y L Sbjct: 26 YHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD---YLKEAIAKGLPLYVSEVDYKL 82 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 + P+++V + +K +SL A Y +P++ +L TGT GK++ A F I Sbjct: 83 ---------DIPVVLVTDIKKAMSLIAMAFY-DNPQDQLKLLGFTGTKGKTTAAYFAYHI 132 Query: 137 CQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + S + +T+ +F + ++LTTP + L ++ G+TH+ +E SS Sbjct: 133 LKESYKPALLSTMNTTLDGQTFFK-SQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAY 191 Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--D 250 R+ G+ G F N+ DHI H T + YF K LL + S A++ D Sbjct: 192 LVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMENSRAVVINSGMD 246 Query: 251 AY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLF 304 + + +V + H F I Q + G+ +D Sbjct: 247 HFPFLANQVANQEH-------------AFYGALSDNQITTSQAFSFEANGQLAGHYDI-- 291 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G F NA+ A C+ +G A + + + K V PGR E V T + +++VDYAH Sbjct: 292 QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAH 349 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSE 423 +SLE +L + +G ++++ G G++ + +R G + ++ ++ T D+P E Sbjct: 350 NGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAVINQHPNLTVILTADDPNFE 409 Query: 424 DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480 DPE I EI I I+ +R +AI+ A+ + +D +++AGKG + IV GEK Sbjct: 410 DPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIV-KGEK 467 >gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS69] gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae Hungary19A-6] gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CCRI 1974] gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae CCRI 1974M2] gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP14-BS69] gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae Hungary19A-6] Length = 481 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus pneumoniae G54] gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae G54] Length = 481 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GADCYQIIQGKKESYPGDTAVAENYL 481 >gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC 35896] Length = 510 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 180/378 (47%), Gaps = 28/378 (7%) Query: 32 EVSSDSRH---IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 E+SS + H ++ +FV I G K DGH ++ A+ A +V+ + QD Sbjct: 23 EISSLAYHSAKVEQNGLFVCIKGYKADGHKYLASAVEHNA---IVAVVETFQDI------ 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P + V+++R L+ +S Y + ++ +T T+GK++ A V ++ +++ + Sbjct: 74 DIPQVKVEDSRIALATMSSNYYDNPSKKMTVIGITATNGKTTTAFMVDEVLRKAKKKTGI 133 Query: 147 IGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T I S + + LTTP + L K ++ + QGVTH+++E SS L+ HR+ G+ Sbjct: 134 IG-TVMIRSLNEVIPSVLTTPESLDLQKYMAMMVEQGVTHLTMEVSSSALELHRVHGVDF 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 F N+ RDHID H + + YF K L + P + A+I ADD+ ++++ N Sbjct: 193 DFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGMKPS-AKAVINADDSLLHDLIQEKQNQV 251 Query: 265 CRVLSVGYQGKF----IHLKKVCA----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +G + L A + N + T+S+ + +PG VYNA+ Sbjct: 252 ITYSVESNRGDLYCTQLDLSTGIANWKIVPNPTKSTLSLLNSEVKIALSVPGYHSVYNAM 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A LC+ ID + + L V RFE + + +I D+ + ++ + L+ + Sbjct: 312 AAMELCLLCQIDIDTIQDGLHSFKGVERRFELI--YDKEFKIIDDHFANTGNIRVTLETL 369 Query: 377 RTITSGRIIVVFGCGGDR 394 + + ++ ++ G R Sbjct: 370 KKMKYEQLHFIYAIRGSR 387 >gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc gasicomitatum LMG 18811] gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase [Leuconostoc gasicomitatum LMG 18811] Length = 491 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 115/406 (28%), Positives = 191/406 (47%), Gaps = 39/406 (9%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQ-----RSGL 142 P V N +K L++ + + +P+ L A TGT GK++ A I + + L Sbjct: 75 PQWQVTNVQKALAVLSMAFF-DYPQKALWIGAFTGTKGKTTAAYMAFNILKDATNNHTAL 133 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S T T + + LTTP L K + G+TH+ +E SS + R+ G+ Sbjct: 134 FSTVDRITGTGPGDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKQRVYGL 193 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + G+F N+ DHI + H T + Y KM LF+ I+ A+ + K V+ A Sbjct: 194 RYNVGAFLNISPDHIGPNEHPTFEDYLAHKMMLFDH----SDQVIVNAESEHLKTVLGHA 249 Query: 261 HNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQV 312 +V + G G + ++ + AIH + + VE D ++ LPG+F Sbjct: 250 TQTHDKVYTYSLAGQGGNYSYVSRESAIHESRLI---VEPSDLNELAGEYRLNLPGDFNE 306 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSL 369 NA+ A + G ++ L+ + +PGR VG G +VDYAH S+ Sbjct: 307 SNAMAALIMTALAGAKHENMVHGLDVV-FIPGRMLSLPIVGH----GVAFVDYAHNYASM 361 Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +L + G+++VV G G++ +R G++ +LADI +T D+P+ E P+ I Sbjct: 362 RALLNFAQNQYPEGKVLVVVGSPGNKGVSRRADFGRVVSELADIVYLTADDPQFESPKAI 421 Query: 429 RAEIIHGIPGF-IE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EI I +E + +RI+AI AI+ ++D+++VAGKG + Sbjct: 422 ADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERDIVIVAGKGED 467 >gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC0288-04] gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Streptococcus pneumoniae CDC0288-04] Length = 481 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 140/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS R+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 LL + S A+I D V+K Y +F + I N + + S Sbjct: 231 LLMENSRAVIINSDMDHFSVLKEQVEDQDHDF---YGSQFDN-----QIENSKAFSFSAT 282 Query: 297 GK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVG 350 GK D+D L G F NA+ A C+ +G LE ++K VPGR E V Sbjct: 283 GKLAGDYDI--QLIGNFNQENAVAAGLACLRLGAS----LEDIKKGIAATRVPGRME-VL 335 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 T G ++++DYAH +SL+ ++ + T +G+I +V G G++ + +R G + Sbjct: 336 TQKNGAKVFIDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHP 395 Query: 411 DIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGK 467 +I + +T D+P EDP I EI I +EK +R EAI+ A+ + N + D +++AGK Sbjct: 396 EIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGK 455 Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493 G + I+ ++ D + L Sbjct: 456 GVDCYQIIQGKKESYPGDTAVAENYL 481 >gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Lactobacillus fermentum IFO 3956] Length = 511 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + R + ++S DSR ++ G +F G K D ++ A QGA + + YS Q Sbjct: 32 PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136 + + P ++V + +K ++ + +G N ++ TGT GK++ F + + Sbjct: 89 LKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148 Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q S + G T + LTTP + L + + + ++ +E S Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S + R+ G+ L G F N+ DHI H + + Y K E++ ++ Sbjct: 203 SQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305 + + + ++AH+ G +V+S G + H VT + + D DF Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+F V NAL A + + S L + VPGR EF+ + +G VDYAH Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SL ++ GR+IVV G G + + +R +G+ AD+AI+T ++ ED Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +I A+I I I +R AI A M D L +A KG ET Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487 >gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 511 Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + R + ++S DSR ++ G +F G K D ++ A QGA + + YS Q Sbjct: 32 PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136 + + P ++V + +K ++ + +G N ++ TGT GK++ F + + Sbjct: 89 LKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148 Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q S + G T + LTTP + L + + + ++ +E S Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S + R+ G+ L G F N+ DHI H + + Y K E++ ++ Sbjct: 203 SQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305 + + + ++AH+ G +V+S G + H VT + + D DF Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+F V NAL A + + S L + VPGR EF+ + +G VDYAH Sbjct: 319 MPGDFNVANALAALTVTAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SL ++ GR+IVV G G + + +R +G+ AD+AI+T ++ ED Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +I A+I I I +R AI A M D L +A KG ET Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487 >gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 511 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + R + ++S DSR ++ G +F G K D ++ A QGA + + YS Q Sbjct: 32 PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136 + + P ++V + +K ++ + +G N ++ TGT GK++ F + + Sbjct: 89 LKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148 Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q S + G T + LTTP + L + + + ++ +E S Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S + R+ G+ L G F N+ DHI H + + Y K E++ ++ Sbjct: 203 SQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305 + + + ++AH+ G +V+S G + H VT + + D DF Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+F V NAL A + + S L + VPGR EF+ + +G VDYAH Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SL ++ GR+IVV G G + + +R +G+ AD+AI+T ++ ED Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +I A+I I I +R AI A M D L +A KG ET Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487 >gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus hilgardii ATCC 8290] gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus hilgardii ATCC 8290] Length = 514 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 120/443 (27%), Positives = 205/443 (46%), Gaps = 55/443 (12%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V N +K +SL ++ +G P+N L A TGT GK++ A F + I + + ++ Sbjct: 84 PGIIVKNIQKSMSLLSAAFFG-FPQNSLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 140 Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 STI++ + + LTTP + L ++ +TH+ +E SS + R+ Sbjct: 141 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 200 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ G F N+ DHI + H T Y + K E+LL +I AD + +V Sbjct: 201 NLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 256 Query: 259 RA------------HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301 A H G + + ++ L + + Q +++S + K D Sbjct: 257 TAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKQLGIDGT 316 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRG 355 + + G++ NA+ AA I SA++ H ++ VPGR E T G Sbjct: 317 YEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IYVDYAH SL +L ++ + G +IV+ G GD+ +R +GK + A++A Sbjct: 370 -TIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAY 428 Query: 415 VTDDNPRSEDPEKIRAEIIHGI-PGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P +EDP+ I EI I P ++ +R AI+ A+ + D++VVAGKGH+ Sbjct: 429 LTTDDPATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D I+ ++ Sbjct: 489 AFQKINGKNVPYAGDATIVANLV 511 >gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 511 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 36/471 (7%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + R + ++S DSR ++ G +F G K D ++ A QGA + + YS Q Sbjct: 32 PEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDPK-YLTMAANQGASVAMAPADYSAQ- 88 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI--- 136 + + P ++V + +K ++ + +G N ++ TGT GK++ F + + Sbjct: 89 LKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAK 148 Query: 137 ------CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 Q S + G T + LTTP + L + + + ++ +E S Sbjct: 149 ALGKVVAQLSSIDECLDGETFIPA------HLTTPESLDLFRMMKEAVDNQMKYLVMEVS 202 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S + R+ G+ L G F N+ DHI H + + Y K E++ ++ Sbjct: 203 SQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACK----SEIIDNCRILVVNR 258 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFP 305 + + + ++AH+ G +V+S G + H VT + + D DF Sbjct: 259 ECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFRVM 318 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+F V NAL A + + S L + VPGR EF+ + +G VDYAH Sbjct: 319 MPGDFNVANALAALTVAAQVAPVSEDFRAGLAET-TVPGRMEFI-KDKQGVVACVDYAHN 376 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 SL ++ GR+IVV G G + + +R +G+ AD+AI+T ++ ED Sbjct: 377 YLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGRALSQYADVAILTSEDNFFED 436 Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P +I A+I I I +R AI A M D L +A KG ET Sbjct: 437 PHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDALFMAAKGRET 487 >gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes teichomyceticus] Length = 298 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 141/289 (48%), Gaps = 37/289 (12%) Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIY----ADDAY 252 I+ AG +TN G+DH+D+H T + YF AK RLF+ +L + PA++ Y Sbjct: 1 IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTEVGVLNHDDPAVMSLLAPGMVTY 60 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 S A V + +F+ H +T+ LPG V Sbjct: 61 SASGNTEATWWASDVRPSDFGQRFV-------AHGPGGITVETG-------VALPGLHNV 106 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSNSL- 369 NAL+A L +A+GID + + + VPGR E V G I VDYAH N++ Sbjct: 107 ANALLALALLVAVGIDPQVAGTGVRECRGVPGRLEQVAAP---GEILGVVDYAHKPNAIV 163 Query: 370 --EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 L+ + + GR++ V G GGDRD+GKRP+MG+ A AD+ I+TDDNPR+EDP Sbjct: 164 AALAALRELASARGGRLVCVLGAGGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAA 223 Query: 428 IR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AE H +E R AI A+ + DV+ V GKG+E Sbjct: 224 VRAAVRRGAEEAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKGNE 272 >gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK150] Length = 481 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 133/464 (28%), Positives = 218/464 (46%), Gaps = 44/464 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR A +F V + F+ +A++ G + S DF I Sbjct: 35 FDSISYDSRQADASTLF--FVKGEAFKKEFLEKAVSAGLRFYI-----SETDFQVGI--- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L+V++ ++ +SL A YG HPE +LA TGT GK++ A F QI +S + Sbjct: 85 -PVLLVNDVKQAMSLLAMEFYG-HPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 142 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +T+ +F + + LTTP + L K ++ + TH+ +E SS + R+ G+ Sbjct: 143 STMNTTLDGETFFK-STLTTPESLDLIKMMAQALANDRTHLIMEVSSQAYLKKRVYGLTF 201 Query: 205 IAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE--- 253 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAA 319 +V S+ + F I + + + GK +D L G F NA+ A Sbjct: 254 ---QVASM--EHDFYGAGSSNTITDSRAFSFEATGKLAGHYDI--QLIGHFNQENAVAAG 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 C+ +G + + + V PGR E V T G +++VDYAH SL +L + Sbjct: 307 LACLRLGASLKDIKKGIAATRV-PGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVEEH 364 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPG 438 G+II++ G G++ + +R G++ ++ ++ T D+P EDP I EI I Sbjct: 365 QKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISY 424 Query: 439 FIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 ++K +R EAI+ A+ + ++ D +++AGKG + IV GEK Sbjct: 425 PVDKIADREEAIKKALSLTEREGDAVILAGKGADAYQIV-EGEK 467 >gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis K85] gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis K85] Length = 290 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + V N LVA + +G+ + L ++ V PGR E + +G VDYAH Sbjct: 94 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 151 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP Sbjct: 152 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 210 Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IR EI+ G + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 211 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 262 >gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus acidilactici DSM 20284] gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus acidilactici DSM 20284] Length = 507 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 57/494 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR ++ G +F G+ E +L A GA V Y T I Sbjct: 32 ITYDSRKVRPGDMFFC-KGSFEPAYL--KAAREAGATTYVAEREYPEG------TGMTAI 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFV-----QQICQRSGLSS 144 +V + TR L A+ Y + P+N I+ +TGT GK+S A F QQ Q+ L S Sbjct: 83 IVTNVTRAMAVLSAT--YYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFS 140 Query: 145 FQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +GP F D LTTP + L + G+ ++ +E SS + R+ G Sbjct: 141 TIDRIVGPRPE-DQFKSD--LTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYG 197 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +K G F N+ DHI + H+ + Y + K+ +L+ II AD ++V Sbjct: 198 LKYDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTNRFEDVYGA 253 Query: 260 AH----------------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A N G + I+ + A + + +++ G ++ Sbjct: 254 ARATTDPKQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAATSSTKPALAITG---EYD 310 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G++ NA A G D L+ L ++ V+PGR E++ G ++VDYA Sbjct: 311 LNVAGDYNQSNATAAIIAAALAGADRDAALKPLSEI-VIPGRMEYLAIPGHG-VVFVDYA 368 Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H SL +LK ++ G+ IVV G GD+ +R GK + AD+A +T D+P Sbjct: 369 HNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISRRAGFGKALSEQADVAYLTTDDPGF 428 Query: 423 EDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 EDP+ I A+I+ H PG +E +R EAIR AI D++V+AGKG + V Sbjct: 429 EDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKGEDPYQKVRGV 488 Query: 479 EKKMSVDCDIIREI 492 + D + +E+ Sbjct: 489 DTPWPTDMGVAQEV 502 >gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204] gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204] Length = 506 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 116/441 (26%), Positives = 194/441 (43%), Gaps = 50/441 (11%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 ++ A+ +GA A + Y N P + + N R ++ A+ +Y P L Sbjct: 60 YLQDAVNKGAFAYLSEVEYP--------EVNIPWIPLTNVRYAMANLAT-MYYNDPWKEL 110 Query: 119 AVTGTSG-----------KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 V G +G K+ + ++++++ + IG + F ++ LTTP P Sbjct: 111 NVIGLTGTKGKSTTTYYVKAILDTYLERVGKNESAVISSIGTYDGVERF--ESHLTTPEP 168 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQA 225 + L + S + V++E SS L R+ G+ +F N+G DHI H T + Sbjct: 169 LDLERHFSNAVESKIDFVTMEVSSQALKYDRVLGVNFSVAAFLNIGYDHISSVEHPTWED 228 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 YF +K+R+FE+ + ++ D + E++ A A +V++ Sbjct: 229 YFASKLRIFEQC----TYGLVNLDSDHCDEILDAA-KAAKKVITFSEANDTADFYGYDVH 283 Query: 286 HNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLH 340 + V G DFD F +PG F V NAL A + I D L H + Sbjct: 284 KVGNDIVFKVRGSDFDEEFKLSMPGLFNVSNALCAIAIARLYDIPVRDIQAGLYHAK--- 340 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR 399 VPGR E +N + VDYAH S + + +++R+ G R ++FGC G + + +R Sbjct: 341 -VPGRMEIYTSNDKKITAIVDYAHNQLSFQKLFESVRSEYPGYRATIIFGCPGKKAKDRR 399 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG------NRIEAIRTAI 453 +G+IA AD +T+++ EDP I EI + EK +R +AI A+ Sbjct: 400 HDLGEIAGKNADYIYLTEEDAGEEDPLAIAHEIARAVEK--EKAPYEIIIDREKAIARAV 457 Query: 454 E---MLNKQDVLVVAGKGHET 471 E + V+++ GKG ET Sbjct: 458 EDAANVQGNTVILITGKGAET 478 >gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium glutamicum] Length = 555 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 198/446 (44%), Gaps = 23/446 (5%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 IF A+ G + G F A A AI+ +A L+ + + PI+VVD+ R L Sbjct: 86 IFAAVPGTRTHGAQFAGTDNAAKAVAILTDAA-GLEVLNEAGETR-PIIVVDDVRAVLGA 143 Query: 105 FASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNR 161 +S +YG ++ ++ VTGTSGK++ + +++ +G IG T T I + Sbjct: 144 ASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTK 203 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP L + + GVTHV +E SSH L R+ G +FTNL +DH+D+H Sbjct: 204 LTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHP 263 Query: 222 TQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 T YF+AK F P ++ DD++ + + A + V ++G + F Sbjct: 264 TMDDYFDAKALFFRADSPLVADKQVVCVDDSWGQRMASVAADVQT-VSTLGQEADFSATD 322 Query: 281 KVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + Q I+ + + LPG F V NA +A + A + K+ Sbjct: 323 INVSDSGAQSFKINAPSNQSYQVELALPGAFNVANATLAFAAAAPW-VLMATFARGMSKV 381 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGR E + + VDYAH ++ +L +RT GR+ + C RD KR Sbjct: 382 -AVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVLDTLRTQIDGRLGSGYRCWWRRDSTKR 439 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAI 449 MG + + TD N IRA + G +E G+R EAI Sbjct: 440 GPMGSCP-HRSGSSYCTDAN-LVRVAGTIRAAVTAGAQQGASESERPVEVLEIGDRAEAI 497 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIV 475 R +E D +VVAGKGHE +V Sbjct: 498 RVLVEWAQPGDGIVVAGKGHEVGQLV 523 >gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri ATCC 11577] gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus buchneri ATCC 11577] Length = 511 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 121/444 (27%), Positives = 202/444 (45%), Gaps = 57/444 (12%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V N +K +SL ++ +G P+N L A TGT GK++ A F + I + + ++ Sbjct: 81 PGIIVKNIQKSMSLLSAAFFG-FPQNSLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 137 Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 STI++ + + LTTP + L ++ +TH+ +E SS + R+ Sbjct: 138 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 197 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 ++ G F N+ DHI + H T Y + K E+LL +I AD + +V Sbjct: 198 NLRYDVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 253 Query: 259 RA------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------DF 300 A H G ++ F + ++ + ISV K D Sbjct: 254 TAKATSQPEDIFVYHRKGS-TMNEQLPKDFEYQSLADSLSENKIRLISVSDKAKQLGIDG 312 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSR 354 + + G++ NA+ AA I SA++ H ++ VPGR E T Sbjct: 313 TYEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQH 365 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G IYVDYAH SL +L ++ + G +IV+ G GD+ +R +GK + A++A Sbjct: 366 -GTIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVA 424 Query: 414 IVTDDNPRSEDPEKIRAEI-IHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGH 469 +T D+P +EDP+ I EI H P ++ +R AI+ A+ + D++VVAGKGH Sbjct: 425 YLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGH 484 Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493 + + + D I+ ++ Sbjct: 485 DAFQKINGKNVPYAGDATIVANLV 508 >gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] Length = 247 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + V N LVA + +G+ + L ++ V PGR E + +G VDYAH Sbjct: 51 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 108 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP Sbjct: 109 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 167 Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IR EI+ G + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 168 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 219 >gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 514 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 120/443 (27%), Positives = 204/443 (46%), Gaps = 55/443 (12%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V N +K +SL ++ +G P+N L A TGT GK++ A F + I + + ++ Sbjct: 84 PGIIVKNIQKSMSLLSAAFFG-FPQNNLPTIAYTGTKGKTTSAYFTKSILDK--VYDRKV 140 Query: 148 GPTSTISSFAQD-------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 STI++ + + LTTP + L ++ +TH+ +E SS + R+ Sbjct: 141 ALFSTINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVY 200 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + G F N+ DHI + H T Y + K E+LL +I AD + +V Sbjct: 201 NLHYNVGVFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSKKCVINADSDHMVDVYY 256 Query: 259 RA------------HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301 A H G + + ++ L + + Q +++S + K D Sbjct: 257 TAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKRLGIDGT 316 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRG 355 + + G++ NA+ AA I SA++ H ++ VPGR E T G Sbjct: 317 YEISIAGDYNEGNAVSAA-------ITSAMMGAHPTEIEYGLSHTTVPGRMEIYSTKQHG 369 Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 IYVDYAH SL +L ++ + G +IV+ G GD+ +R +GK + A++A Sbjct: 370 -TIYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGIDRREGLGKAINESANVAY 428 Query: 415 VTDDNPRSEDPEKIRAEI-IHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +T D+P +EDP+ I EI H P ++ +R AI+ A+ + D++VVAGKGH+ Sbjct: 429 LTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKGHD 488 Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493 + + D I+ ++ Sbjct: 489 AFQKINGKNVPYAGDATIVANLV 511 >gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera] Length = 347 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 31/284 (10%) Query: 228 NAKMRLFEELL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCA 284 NAK +LF ++ P I+ DD + + + N V++ + K +H K Sbjct: 36 NAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQG-NPDVPVVTFAMENKDADVHPLKFEL 94 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + QV + + L G +YN L A + IA+G ++ +E++ VPG Sbjct: 95 SLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPG 154 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404 R E + G I VDYAHT ++L +L ++R + + RII VFGC G+ D+GKRPIM K Sbjct: 155 RCELIDEEQAFGVI-VDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTK 213 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----------------IEKGNRI-- 446 IA D +D+ I+T DNP++EDP I +++ G+ G+ + G+R+ Sbjct: 214 IATDKSDVVILTSDNPKNEDPLDILDDMLAGV-GWTMHDYLKYGANDYYPPLPNGHRLFL 272 Query: 447 -----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+R A+ M + D++VVAGKGHET I G+KK D Sbjct: 273 HDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQI--EGDKKEFFD 314 >gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein [Mycobacterium tuberculosis SUMu012] Length = 250 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + V N LVA + +G+ + L ++ V PGR E + +G VDYAH Sbjct: 54 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 111 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP Sbjct: 112 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 170 Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IR EI+ G + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 171 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 222 >gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T46] Length = 256 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 99/172 (57%), Gaps = 9/172 (5%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 LPG + V N LVA + +G+ + L ++ V PGR E + +G VDYAH Sbjct: 60 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQI-DRGQGFLALVDYAHK 117 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L +L + R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP Sbjct: 118 PEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 176 Query: 426 EKIRAEIIHG---IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 IR EI+ G + G +E +R +AIR A+ DV+++AGKGHET Sbjct: 177 TAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 228 >gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus metalliredigens QYMF] Length = 513 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 181/378 (47%), Gaps = 30/378 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+SDSR ++ G++FVAI G + DG+ +I +AI +GA +++ + + + I+ Sbjct: 30 VTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGA--VIIYTEHRITALGVMIK----- 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + N RK L+ + Y HP ++ +TGT+GK++ + + + SG+S IG Sbjct: 83 -ICSNARKTLADLCNAFY-DHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGT 140 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I++ LTTPS + L+ + Q V V +E SSHGL R+ GIK Sbjct: 141 LDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSERVHGIKFDIAI 200 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ RDH++YH+ Y +K +LF+ L P + A++ DD +S E++ N G V+ Sbjct: 201 HTNIERDHLNYHKNMGDYIRSKKKLFDCLSPGK-VALLNLDDNHSLELL--TGNNGLIVV 257 Query: 269 SVGYQ------GKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNAL 316 + G I + H Q + VE ++ F L G+ +YN+L Sbjct: 258 TYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSINLLGKHNIYNSL 317 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A C+ + + + ++++ V R E + +G + D++H S + +++ Sbjct: 318 AAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVI--YKKGYTVIDDFSHNPASYGAVFESM 375 Query: 377 RTITSGRIIVVFGCGGDR 394 + + + V+ G R Sbjct: 376 QNLEYKNLHVINAIRGSR 393 >gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 201 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%) Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDY 362 PL GE+ V NAL A+ + ++ D+ ++ + LE VPGR E FV G +DY Sbjct: 1 PLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFV---EDGPVCIIDY 57 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT ++LE +L ++ + +GR+ +VFG GG+R + RPI+G IA AD +VT DNPRS Sbjct: 58 AHTPDALEKVLSTVKPLCNGRLWLVFGHGGERFKENRPILGSIAARFADRIVVTMDNPRS 117 Query: 423 EDPEKIRAEIIHGI---PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 EDP I +I GI PG E +R EA+ A++ K DV++V GKG E Sbjct: 118 EDPRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPE 171 >gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus carboxydivorans Nor1] Length = 492 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 171/376 (45%), Gaps = 28/376 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S S I+ GW+FVAI G DG+ + +A+ GA+A+V + L + P+ Sbjct: 14 ISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAPDRLPPLA------IPV 67 Query: 93 LVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 VV + R+ L+ A+ Y HP N++ VTG++GK++VA ++ I + +G IG Sbjct: 68 AVVPDARQALAALAAHFY-NHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGT 126 Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 + + +RLTTP L + L+ + GVTH ++E S+ G++ R+D + G Sbjct: 127 VRVNVGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGI 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D+H T Y AK R L P SP ++ DD + + + A AG V+ Sbjct: 187 LTNICADHLDFHHTFADYLAAKERFLTLLGP--SPLVVNRDDDHCR---RMAALAGGPVI 241 Query: 269 SVGYQGK---FIHLKKVCAIHNKQQVTIS-------VEGKDFDFLFPLPGEFQVYNALVA 318 +V G + A +K ++T S + PL G V NAL+A Sbjct: 242 AVSLTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLA 301 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 A + GI + V R E G + D A S++ + I T Sbjct: 302 AAAGLLHGISPDEIAAAFSSFQGVERRLEIY--RCGGFTVIDDTALNPGSIDAVFATITT 359 Query: 379 ITSGRIIVVFGCGGDR 394 R++VV G R Sbjct: 360 FRYRRLVVVNAIRGGR 375 >gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum ATCC 14931] Length = 518 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +R+ V +S+ +Q+ +F KED ++ +AI +GA A V +Y Sbjct: 32 YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141 ++ L+V N ++ ++L ++ YG ++ A+ TGT GK+S A F Sbjct: 83 ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139 Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + T S D ++LTTP + L + L G+TH+ +E SS R Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + G F N+ DH+ Q + F + E+LL S ++ + +EV + Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257 Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305 A A ++ G G L I N Q +S G D ++ Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G++ V NA AA G+ + E ++H+ GR E + T G +YVDYAH Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375 Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420 S++ +L ++ +I VV G G++ +RP +GK +A + + I+T D+P Sbjct: 376 YASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435 Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I AE I H G +E +R EAI TAI+ D++V+AGKG + V Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + R+++ Sbjct: 496 AGVDTPYPGDIAVARQVI 513 >gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus fermentum CECT 5716] Length = 518 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +R+ V +S+ +Q+ +F KED ++ +AI +GA A V +Y Sbjct: 32 YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141 ++ L+V N ++ ++L ++ YG ++ A+ TGT GK+S A F Sbjct: 83 ---QNEATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139 Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + T S D ++LTTP + L + L G+TH+ +E SS R Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + G F N+ DH+ Q + F + E+LL S ++ + +EV + Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257 Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305 A A ++ G G L I N Q +S G D ++ Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G++ V NA AA G+ + E ++H+ GR E + T G +YVDYAH Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375 Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420 S++ +L ++ +I VV G G++ +RP +GK +A + + I+T D+P Sbjct: 376 YASVKRLLAFLKGQQYQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435 Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I AE I H G +E +R EAI TAI+ D++V+AGKG + V Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + R+++ Sbjct: 496 AGVDTPYPGDIAVARQVI 513 >gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 436 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 119/438 (27%), Positives = 201/438 (45%), Gaps = 48/438 (10%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-- 116 ++ +AIA+G V Y L + P+++V + +K +SL A Y +P++ Sbjct: 17 YLKEAIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLIAMAFY-DNPQDQL 66 Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173 +L TGT GK++ A F I + S + +T+ +F + ++LTTP + L Sbjct: 67 KLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFK-SQLTTPESLDLFAM 125 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKM 231 ++ G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K Sbjct: 126 MAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKR 185 Query: 232 RLFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 L E + I D + + +V + H F I Sbjct: 186 LLMEN---SRAVVINSGMDHFPFLANQVANQEH-------------AFYGALSDNQITTS 229 Query: 289 QQVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q + G+ +D L G F NA+ A C+ +G A + + + K V PGR Sbjct: 230 QAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV-PGR 286 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E V T + +++VDYAH +SLE +L + +G ++++ G G++ + +R G + Sbjct: 287 ME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAV 345 Query: 406 ALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLN-KQDVL 462 ++ ++ T D+P EDPE I EI I I+ +R +AI+ A+ + +D + Sbjct: 346 INQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAV 405 Query: 463 VVAGKGHETVHIVTNGEK 480 ++AGKG + IV GEK Sbjct: 406 IIAGKGADAYQIV-KGEK 422 >gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus fermentum IFO 3956] gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase [Lactobacillus fermentum IFO 3956] Length = 518 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 132/498 (26%), Positives = 220/498 (44%), Gaps = 45/498 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +R+ V +S+ +Q+ +F KED ++ +AI +GA A V +Y Sbjct: 32 YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 82 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141 ++ L+V N ++ ++L ++ YG ++ A+ TGT GK+S A F Sbjct: 83 ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 139 Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + T S D ++LTTP + L + L G+TH+ +E SS R Sbjct: 140 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 199 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + G F N+ DH+ Q + F + E+LL S ++ + +EV + Sbjct: 200 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 257 Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305 A A ++ G G L I N Q +S G D ++ Sbjct: 258 AAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 317 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G++ V NA AA G+ + E ++H+ GR E + T G +YVDYAH Sbjct: 318 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 375 Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420 S++ +L ++ +I VV G G++ +RP +GK +A + + I+T D+P Sbjct: 376 YASVKRLLAFLKDQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 435 Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I AE I H G +E +R EAI TAI+ D++V+AGKG + V Sbjct: 436 AFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 495 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + R+++ Sbjct: 496 AGVDTPYPGDIAVARQVV 513 >gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Staphylococcus aureus subsp. aureus M809] Length = 300 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 37/304 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E++I+++++DSR + G IFVA VG D H F QG + +VV+ SL Sbjct: 20 EQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKEQSLS------ 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVAS---FVQQICQRS- 140 +N +VV +T + S+ A L Y H VTGT+GK+S+A+ +Q+ Q++ Sbjct: 74 -ANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKLQKNS 132 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + FQI T T + TTP + L K + G +++E SSHGL Sbjct: 133 AYLGTNGFQINETKTKGAN------TTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLG 186 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSK 254 RL G++ F+NL +DH+D+H T +AY +AK LF +L L KE ++ DD++S Sbjct: 187 RLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFS- 245 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 E ++ + + +F+ + + S++G FDF+ P G +QV + Sbjct: 246 EYLRTVTPYEVFSYGIDEEAQFM----------AENIQESLQGVSFDFVTPF-GTYQVKS 294 Query: 315 ALVA 318 V Sbjct: 295 PYVG 298 >gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20] gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20] Length = 516 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/483 (26%), Positives = 218/483 (45%), Gaps = 49/483 (10%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 D+R ++ +FV + G F P+ + AQG IV S + + P Sbjct: 50 DTRQVEPETLFV-VKG------AFRPKYLENAQGITGIVSESQLPV---------DLPQW 93 Query: 94 VVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ-----RSGLSSFQ 146 V N +K LSL + + +N+ A TGT GK++ A I + + L S Sbjct: 94 QVTNVQKALSLLSMAFFDYPQKNLWIGAFTGTKGKTTAAYMTYNILKAATDNHTALFSTV 153 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T +S + + LTTP L K + + G+TH+ +E SS + R+ G++ Sbjct: 154 DRITGPKASDRKKSDLTTPESYELFKDMRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQV 213 Query: 207 GSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAH 261 G+F N+ DHI + H + Y K+ LF+ I+ A+ + E+M K+ H Sbjct: 214 GAFLNISPDHIGPNEHPNFEDYLAHKLMLFDH----SDKVIVNAESDHLSEIMTHAKKGH 269 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNAL 316 + + G++ + AIH Q ++V+ D + LPG+F NAL Sbjct: 270 DKIYTYSNAEKGGEYTFTSQSSAIHESQ---LTVQASDLSEMAGAYRLNLPGDFNESNAL 326 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G +++ L+ + +PGR + + G +VDYAH S+ +LK Sbjct: 327 AALIMAALAGAKHEAMVKGLDTV-FIPGRMLSLPIPNHG-VAFVDYAHNYASMHALLKFA 384 Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ G++IVV G G++ +R G++ +LAD+ +T D+P+ E P+ I EI Sbjct: 385 QSQYPDGKVIVVVGSPGNKGVSRRADFGRVVSELADVVYLTADDPQFESPKTIADEIAAH 444 Query: 436 I--PGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I P + +RI AI A+ D+++VAGKG + V ++ D +++ Sbjct: 445 INNPKLDVHFEMDRIAAINQALLAARDNDIVIVAGKGEDPYQKVNGVDEPYIGDYAVVKN 504 Query: 492 ILG 494 + Sbjct: 505 FVA 507 >gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758] Length = 505 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 117/472 (24%), Positives = 204/472 (43%), Gaps = 50/472 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+ + ++ DSR + G +F I ++ AI +GA A V Y Sbjct: 28 EEKNVGYLTYDSREVTEGTLF--ICKGAAFKAEYLDAAIEKGAIAYVSEVKYE------- 78 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC----- 137 + + P +VD+ RK + A + + P L +TG T GKS+ A +++ I Sbjct: 79 TKEDVPYFLVDDIRKAMPPLAEK-FNNAPWKKLTITGIGGTKGKSTSAYYMKAIVDDYME 137 Query: 138 -----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + LSS I +++ +TTP + L + L + G+T +E SS Sbjct: 138 ATGGKESAVLSSIDIYD----GVIKKESHITTPESVELQEHLRHAVESGITFAEMEVSSQ 193 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 L +R+D ++ G F N+ DHI H + YF++K+++F K ++ D Sbjct: 194 ALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIF----GKSRYGVVNMDA 249 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPG 308 ++ ++K + +VL+ + + + + V+ + FD F +PG Sbjct: 250 DFADRILKES-KVCEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELFDEEFRLTMPG 308 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 F V NAL I + I + L + GR E G+ + VDYAH S Sbjct: 309 LFNVENALAVIAASILLEIPKEYMHSGLLRAR-SSGRMELYGSADKNLIAVVDYAHNKLS 367 Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 E + +I+ I+ +FGC G + +R +G +A A +T ++P E E+ Sbjct: 368 FEKLFSSIKDEYPDYNIVSIFGCPGKKAFIRRRDLGTVAGQYAKKVYLTAEDPGYEPVEQ 427 Query: 428 IRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHET 471 I EI ++E N R EAI+ A++ + + ++ GKG+ET Sbjct: 428 ISKEIAQ----YVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIFLITGKGNET 475 >gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus sanguinis SK355] Length = 400 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 124/406 (30%), Positives = 197/406 (48%), Gaps = 39/406 (9%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L+V++ ++ +SL A Y HPE +LA TGT GK++ A F QI +S + Sbjct: 4 PVLLVNDVKQAMSLLAMEFY-DHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALLS 62 Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +T+ +F + + LTTP + L K ++ S TH+ +E SS + R+ G+ Sbjct: 63 TMNTTLDGETFFK-STLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAYLKKRVYGLTFD 121 Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G F N+ DHI H T + YF K LL S A+I +++K Sbjct: 122 VGVFLNISPDHIGPIEHPTFEDYFYNK-----RLLMDNSRAVIVNSGMDHFQIVKE---- 172 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAG 320 +V S+ + F I + Q + GK +D L G F NA+ AA Sbjct: 173 --QVASM--EHDFYGADSSNTITDSQAFSFEATGKLAGHYDI--QLIGRFNQENAVAAAL 226 Query: 321 LCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 C+ +G LE ++K VPGR E V T G +++VDYAH SL +L ++ Sbjct: 227 ACLRLGAS----LEDIKKGIAATRVPGRME-VLTQKNGAKVFVDYAHNGVSLSNLLSVVQ 281 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI 436 G+II++ G G++ + +R G + ++ ++ T D+P EDP I EI I Sbjct: 282 EHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYI 341 Query: 437 PGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEK 480 +EK +R EAI+ A+ + ++ + +++AGKG + IV GEK Sbjct: 342 SYPVEKIADREEAIKKALSLTEREGEAVILAGKGADAYQIV-EGEK 386 >gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 196 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/170 (44%), Positives = 100/170 (58%), Gaps = 12/170 (7%) Query: 308 GEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F + N L A G + G+D AL +L+ L KL GR + +G + + VDYAHT Sbjct: 2 GRFNLSNVLSAVGALL--GLDYALDEILKVLPKLEGPVGRMQRLGGADKP-LVVVDYAHT 58 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++LE +L+ +R GR++ +FGCGGDRD+GKRP+M ++ LAD VTDDNPRSE P Sbjct: 59 PDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESP 118 Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 I +I G FIE R +AI I N DV+V+AGKGHE Sbjct: 119 ASIFDDIRPGFAAADKVRFIE--GRGQAIAELIASANADDVVVLAGKGHE 166 >gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2] gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2] Length = 504 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 137/490 (27%), Positives = 221/490 (45%), Gaps = 62/490 (12%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + + +S DSR A +F ++ +L A+AQG + V Y ++ Sbjct: 34 PQEMNDLIFTSLSYDSRQTDANTLFFCKGAAFKESYL--ESAVAQGLQCYVSEHPY--EN 89 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139 SA ++V + R ++ A Y + + + +TGT GK+S A FV++I + Sbjct: 90 CSAYG------IIVTDIRAAMACIAQAFYNNPQDQLFKIGITGTKGKTSCAYFVREILAK 143 Query: 140 SG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + ++ F + Q+ LTTP + L ++ + G+TH+ +E SS Sbjct: 144 TTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVANGMTHLVMEVSSQAYKT 203 Query: 197 HRLDGIKLIAGSFTNLGRDHI---------DY--------HQTQQAYFNAKMRLFEELLP 239 R+ GI G F N+ DHI DY H ++Q N + FE L Sbjct: 204 KRVSGITYEIGIFLNISPDHIGPVEHPDFDDYLFCKRELIHNSKQMIINRQSDYFE--LL 261 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 KE+ A A+ ++ G + G K IH+++ + + V G Sbjct: 262 KETCA------AHQVPLITYGQCDGDYQVLPAESGD----PKSFRIHSEKDILL-VNG-- 308 Query: 300 FDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 D+ L GEF NA +VAA L A ++ VL ++ +PGR V G Sbjct: 309 -DYQLALLGEFNHDNATAAIVAACLAGATQEEAQSVLPNV----TIPGRM-IVLEKQNGA 362 Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 I VDYAH S + + + T+ GR+I V G G + + +RP MG+ + AD + Sbjct: 363 LIIVDYAHNYLSFKSLSELAHTLRPKGRLIFVTGSAGGKAESRRPDMGRALSEYADKVYL 422 Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 T D+P EDP I AEI I P I E+ +R A+++A+ QD++++AGKG E Sbjct: 423 TSDDPNFEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKGAEQ 482 Query: 472 VHIVTNGEKK 481 ++ NG+K+ Sbjct: 483 -YLKVNGQKE 491 >gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum ATCC 49989] gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum ATCC 49989] Length = 505 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 128/471 (27%), Positives = 217/471 (46%), Gaps = 50/471 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ DS+ + G +FV + +L +AI +GA V Y + N Sbjct: 26 VSNIAYDSKKVSNGTLFVCKGAAFKKQYL--EEAIEKGACCYVSEDCYDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQ 146 P + V + RK +++ A R Y HP+ L + G +G A +++ I L+S + Sbjct: 75 IPQIRVGDIRKAMAVIAGRFYD-HPDRKLTLIGITGTKGKTTTAYYIKAILDTFLLNSGK 133 Query: 147 --IGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G S I ++ +++ LTTP L + LS + G+ ++ +E SS L HR Sbjct: 134 KPAGILSGIFNYYGKDYEESSLTTPETFELFEKLSNAAENGLEYLVMEVSSQALKYHRTY 193 Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ + NL DHI H + Y +K+ LF+ A++ D + ++ + Sbjct: 194 GLMFDFAGYLNLDEDHISPGEHSDFEDYKASKLLLFKAC----DVAVLNKDSEHYEDFLN 249 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFD-------FLFPL 306 +A +V+S +G + C I+ K + +D D F Sbjct: 250 ECVDAK-KVISFSSKGLDADY-RACDINAKNGVLEFNIVYHDASRDTDEPVRKSNFTILS 307 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHT 365 GEF + NAL+A + + + + E L + VPGR E V SRGGRI VD+AH Sbjct: 308 SGEFNIDNALLATSIGSELNVPYEDMKEALYNVK-VPGRMEVV--KSRGGRIAIVDFAHN 364 Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP---R 421 S + + ++ +I +VFG G + +R +MG IA AD +T+D+P + Sbjct: 365 KLSFIKLFEAVKKEYPDKKIAIVFGTPGGKAYDRRALMGMIAAKNADKVYITEDDPYREK 424 Query: 422 SED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +ED E+IRAE + + NR +AI+ A E + + ++++AGKG E Sbjct: 425 AEDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILIAGKGIEN 475 >gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pediococcus pentosaceus ATCC 25745] gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus ATCC 25745] Length = 507 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 137/498 (27%), Positives = 216/498 (43%), Gaps = 65/498 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR ++ G++F GN + +L + A GA V + Y T I Sbjct: 32 ISYDSRTVKPGYMFFC-KGNFKPEYLSV--ARQNGATTYVSENEYPEG------TGMTAI 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +V + TR L A+ Y P+N I+ +TGT GK+S A F I + + Q+ Sbjct: 83 IVTNVTRAMAVLSAT--YYNFPQNDLFIIGITGTKGKTSSAYFAHSILNQKYPN--QVAL 138 Query: 150 TSTIS---------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 STI F D LTTP + L + G+ ++ +E SS + R+ Sbjct: 139 FSTIDRIVGPKPEDQFKSD--LTTPESMNLFHDMRVAVDNGMKYLVMEVSSQAYLRDRVY 196 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+K G F N+ DHI + H+ + Y + K+ +L+ II AD +V Sbjct: 197 GLKFDCGIFLNITPDHIGRNEHKDFEDYLHCKL----QLMVNSKRCIIDADTDRFDDVFG 252 Query: 259 RA----------------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A N G L + + + + V G D+ Sbjct: 253 AAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTSNRFTLVESSSKAEAFHVAG---DY 309 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G++ NA A + D+ L L+ + V+PGR E + G ++ Sbjct: 310 DLNVAGDYNQSNATAAIIAAALADVTYQDAVLPLKSI----VIPGRMEHLNVPGHG-VVF 364 Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 VDYAH SL +LK ++ G++IVV G GD+ +R G+ + ADIA +T D Sbjct: 365 VDYAHNYASLHALLKFLKHQYHDGKVIVVVGSPGDKGISRRAGFGQALSEQADIAYLTTD 424 Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 +P EDPE+I +I+ I PG +E +R +AI AI +++DV+V+AGKG + Sbjct: 425 DPAFEDPEQIIQQIMDNIKPGTVEVRQVLDRHDAIEQAIMNSSEKDVVVLAGKGEDPYQK 484 Query: 475 VTNGEKKMSVDCDIIREI 492 V + D + E+ Sbjct: 485 VGGVDTPWPTDMGVAEEV 502 >gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM 15829] Length = 580 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 133/525 (25%), Positives = 223/525 (42%), Gaps = 92/525 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSAT 85 IN + S+S + Q IFV G F P+ A+ +GA A + + ++ Sbjct: 60 INGLDSNSLYSQKHHIFVC------KGAAFKPEYLQDALKKGATAYMCDNTHA-----QA 108 Query: 86 IRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTG-------TSGKSSVASFVQQ 135 +R+ P +VV+N R ++ A +G HP+ L G T+ + S + Sbjct: 109 LRTYCPHAVQIVVNNIRLAMAQAAPLAWG-HPDTRLITVGITGTKGKTTTACMIKSILDA 167 Query: 136 ICQRSGLSSFQ----IGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 QR + + Q IG +I+++ +++ TTP + L + G+TH+ + Sbjct: 168 RAQRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITHMVM 227 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAI 245 E SS L HR+DG+ L F N+ DHI H T + YF +K+ +F + A+ Sbjct: 228 EISSQALKHHRVDGLHLDVALFLNISPDHISKVEHPTFEDYFLSKLMIFS----MANAAV 283 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSV-----------GYQGKFIHLKKV------------ 282 + D + + + AH C L V Y+ +F+ KKV Sbjct: 284 MNLDADHFEAIYAHAH--ACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTL 341 Query: 283 -------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 C + + + DF PL G F V NAL A + +++ Sbjct: 342 PADIAAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNT 401 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388 + + + L HV GR EF+ T+++ + VDYAH S ++ +II +F Sbjct: 402 SDIQQGLANTHVA-GRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALF 460 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGN 444 G G + +R + + A AD ++T+++P E + I E+ +P +IE N Sbjct: 461 GAPGGKAFDRRRDLVEEAAKWADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIE-CN 519 Query: 445 RIEAIRTAIEMLN---KQDVLVVAGKGHETVHIVTNGEKKMSVDC 486 R AI A+E+ N + ++ + GKG ET T E+ V C Sbjct: 520 RAAAIEKAVELANCSQAKTLICMLGKGDET----TQHEQDRYVSC 560 >gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum 28-3-CHN] Length = 516 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 131/498 (26%), Positives = 219/498 (43%), Gaps = 45/498 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +R+ V +S+ +Q+ +F KED ++ +AI +GA A V +Y Sbjct: 30 YRQHFFYHVEYNSKLVQSETLFFCKGAAFKED---YLNEAIDRGATAYVAEQSY------ 80 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSG 141 ++ L+V N ++ ++L ++ YG ++ A+ TGT GK+S A F Sbjct: 81 ---QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGT 137 Query: 142 LSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + T S D ++LTTP + L + L G+TH+ +E SS R Sbjct: 138 DDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVSSQSYLLDR 197 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + G F N+ DH+ Q + F + E+LL S ++ + +EV + Sbjct: 198 VYSLHFGIGVFLNISSDHVG--QNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQ 255 Query: 259 RAH--NAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQVTISVEGK----DFDFLFP 305 A A ++ G L I N Q +S G D ++ Sbjct: 256 AAKVSTAPDKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSS 315 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + G++ V NA AA G+ + E ++H+ GR E + T G +YVDYAH Sbjct: 316 VAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIA-GRMEVIRTQEH-GTVYVDYAHD 373 Query: 366 SNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNP 420 S++ +L ++ +I VV G G++ +RP +GK +A + + I+T D+P Sbjct: 374 YASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVILTTDDP 433 Query: 421 RSEDPEKIRAE----IIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 EDP+ I AE I H G +E +R EAI TAI+ D++V+AGKG + V Sbjct: 434 AFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTDQYQKV 493 Query: 476 TNGEKKMSVDCDIIREIL 493 + D + R+++ Sbjct: 494 AGVDTPYPGDIAVARQVV 511 >gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus sakei subsp. sakei 23K] gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus sakei subsp. sakei 23K] Length = 513 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 119/443 (26%), Positives = 199/443 (44%), Gaps = 61/443 (13%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RSGLSS 144 L+V N +K +++ ++ Y +P++ I+A TGT GK++ + F Q I Q ++ L S Sbjct: 84 LIVTNVQKAMAVLSAAFY-DYPQDDLFIVAYTGTKGKTTASYFTQSILQDATNKKTALFS 142 Query: 145 F---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +GP F D LTTP + L + G+TH+ +E SS ++R+ G Sbjct: 143 TIDRVLGPKPE-DRFKSD--LTTPESLDLFHDMRQAVENGMTHLVMEVSSQAYKKNRVYG 199 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL-------------------FEELLPK 240 + G F N+ DH+ + H + Y + K++L + Sbjct: 200 LTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQLLVNSRHCVINAQTQNFGDVYAAATTT 259 Query: 241 ESPAIIY--ADDAYSK----EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 P IY AD +Y + R N + + +F KV A+ +K+ + + Sbjct: 260 TEPENIYLFADTSYQPAQPVNIDFRFENQAMTLA----ESRF----KVTAV-SKKAIQLG 310 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 V G D+ L G+F NA A G D + + +L + PGR E + Sbjct: 311 VSG---DYQLRLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQI-PGRMETLAVEGH 366 Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G ++YVDYAH S++ +L + + +++VV G GD+ +R ++ + AD A Sbjct: 367 G-QVYVDYAHNYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRA 425 Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 I+T D+P EDP I AEI+ GI + +R AI+ AIE D++V+A KG Sbjct: 426 ILTTDDPGYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKGA 485 Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492 + V + D I +++ Sbjct: 486 DAYQKVRGVDTPYPTDMVIAKQV 508 >gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium 2_1_46FAA] Length = 508 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 118/464 (25%), Positives = 213/464 (45%), Gaps = 42/464 (9%) Query: 30 INEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 I +++ DS+ + +F+ + KE+ ++ +A+ GA + Y L + Sbjct: 35 IEQLTFDSKKVTENTLFICKGMAFKEE---YLKEAVKNGAVCYISEQKYELDE------- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V + RK + + A++ + + + N++ + GT GKS+ +++ I L++ Sbjct: 85 DVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKGKSTSVYYMKSILD-DYLAANG 143 Query: 147 IGPTSTISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 ++ ISS ++ +TTP + L + G+ V +E SS L R+ Sbjct: 144 KKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVNCGMEFVEMEVSSQALKYGRV 203 Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + + F N+ DHI H+ + YF++K+ +F+ K A++ D +S ++ Sbjct: 204 NEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQ----KTKTAVVNLDADFSDRIL 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFD--FLFPLPGEFQVYN 314 + A A +V+++ + + IH + TI +V +FD F +PG F V N Sbjct: 260 EAAQCAP-KVVTISTKNENADFYAY-NIHKEGDGTIFNVRCAEFDKEFELTMPGFFNVEN 317 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL + I + L+K GR E ++ VDYAH S E + Sbjct: 318 ALATIAVANQFNIPVEFMYSGLKKARS-SGRMELSTSDDNKIIAVVDYAHNKLSFEKLFS 376 Query: 375 NIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 +I+ R II +FGC G + +R +G IA A + ++P E E+I +I Sbjct: 377 SIKEEYPDREIISIFGCPGKKAFTRRRDLGTIAGKYAKKVYLAAEDPGYEPVEEISRDIA 436 Query: 434 -----HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P IE +R EAI+ AIE + +L++ GKG+ET Sbjct: 437 EYVEAQGCPYEMIE--DRGEAIKKAIESVENPSILLITGKGNET 478 >gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes HCC23] Length = 293 Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 30/309 (9%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + ++ + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQLDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-----LPKESP 243 SSH L Q R+ G F NL +DH+DYH T Y NAK LF +L Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ ADDA S M+ A A + Q F + I+ G FD Sbjct: 236 AVLNADDAESVR-MQTATAAHVITFGIKQQADF----------KASNIQITSHGSTFDLT 284 Query: 304 FPLPGEFQV 312 P+ GEF V Sbjct: 285 TPV-GEFTV 292 >gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group] Length = 770 Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 123/531 (23%), Positives = 244/531 (45%), Gaps = 63/531 (11%) Query: 13 ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ ++ + V D+ + AG ++V + E+G + +A +GA Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A+V D T+ +++VD+ L + + LY + ++ ++ V GT G + Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181 + A V+ + + G+ + +G + ++A +N+L + PI + + ++ + G Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239 +EA++ G+ +D I TN+ + T + Y N+ LF ++ P Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297 + ++ DD S V++ ++ K +H K + +V + Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G +YN L + + +A+G +++ +E++ +PGR E + G Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGK 404 + VD+A T SL +L ++ + RI+ VV GC G+R++GKRP+M K Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTK 636 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI--- 446 +A + +D+ ++T DNP +EDP I +++ G+ +E+ G+RI Sbjct: 637 VAAEKSDVVMLTSDNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLH 696 Query: 447 ----EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 A+R A+ M + DV+V+ GKG++T I + +K+ D + RE L Sbjct: 697 DIRRVAVRAAVAMGEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 746 >gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces coleocanis DSM 15436] gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces coleocanis DSM 15436] Length = 486 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 130/487 (26%), Positives = 223/487 (45%), Gaps = 53/487 (10%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +VS +S+ + G +FV + ++ +AI GA A + AY + +A I+ Sbjct: 30 QVSYNSKKVIPGALFVC--KGAKFNVAYLEEAIENGALAYISEVAYPVA--AAWIQ---- 81 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQ----RSGLSS 144 V + R + A+ Y P +TG +G ++ F+Q+I +G +S Sbjct: 82 ---VKDIRVAIPKLANAFYTT-PFAAFQLTGITGTKGKSTTTIFLQRILDTYLANTGKTS 137 Query: 145 FQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G S+I+++ +++ LTTP P+ L + + V++E SS GL HR+ Sbjct: 138 ---GIISSINTYDGIVNEESSLTTPEPLELFEHFHNARQSALPFVTMEVSSQGLKYHRVG 194 Query: 201 GIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ G F N+ +DHI H + YF +K+ LF+++ +I D A V+ Sbjct: 195 GVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKLMLFKQV----KHLVINLDSAEIDRVLA 250 Query: 259 R--AHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVY 313 AH + + F CA + + + V G++ D + G F V Sbjct: 251 AIPAHVTVTTISASNPAADF------CATNISTDGYSIKFQVSGEEID--LGISGLFNVE 302 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A + GI + E L ++ VPGR E F+G N I VDYAH S E + Sbjct: 303 NALAAIAVARHYGIPFTAIKEALSEIR-VPGRMELFIGENPNLVTI-VDYAHNRLSYERL 360 Query: 373 LKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 ++ G + I++FGC G + +R + +++ + AD I+T ++P +E +I A+ Sbjct: 361 FQSCEESFPGFKKIIIFGCPGHKALNRRVDLAEVSDEYADHIILTMEDPNAEPVSEISAD 420 Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 I + P I +R+E+ A+ ++ + V++ GKG ET H + D +I Sbjct: 421 IAKNVKHTPVSI-VDDRVESFAYALSLVEGKTVILFVGKGDETTHKIHGKAVPYPSDVEI 479 Query: 489 IREILGL 495 +R L L Sbjct: 480 VRGALNL 486 >gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri ATCC 33323] gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri 224-1] gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC 33323] gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri 224-1] Length = 523 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 130/509 (25%), Positives = 217/509 (42%), Gaps = 71/509 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMNYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ + L Sbjct: 84 GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGM-----LDQI 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + P IY A + + +K+ + R SV K K CA +++ Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASEKAKKLP 315 Query: 293 ISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 I+ D+ + G+F N A++ AGL + A + H+ +PGR E + Sbjct: 316 IAG-----DYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHV----TIPGRMETL 366 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + G I VDYAH S+ ++ + R + +IIVV G GD+ +RP + Sbjct: 367 PSKNHGTVI-VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTA 425 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 A+ A +T D+P EDP I EI GI + +R +AI AI M NK D++++ Sbjct: 426 YANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLI 485 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + + + D + ++ Sbjct: 486 CGKGADPFQKIRGVDTPYPTDIKVAESVI 514 >gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri 202-4] gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri JV-V03] gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri 202-4] gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus gasseri JV-V03] Length = 523 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 130/509 (25%), Positives = 217/509 (42%), Gaps = 71/509 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMNYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ + L Sbjct: 84 GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGM-----LDQI 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + P IY A + + +K+ + R SV K K CA +++ Sbjct: 258 AAATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASEKAKKLP 315 Query: 293 ISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 I+ D+ + G+F N A++ AGL + A + H+ +PGR E + Sbjct: 316 IAG-----DYTLQMIGDFNEMNGTAAIIGAGLAGESYAECAKGIRHV----TIPGRMETL 366 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + + G I VDYAH S+ ++ + R + +IIVV G GD+ +RP + Sbjct: 367 PSKNHGTVI-VDYAHNKASMIALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTA 425 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 A+ A +T D+P EDP I EI GI + +R +AI AI M NK D++++ Sbjct: 426 YANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLI 485 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + + + D + ++ Sbjct: 486 CGKGADPFQKIRGVDTPYPTDIKVAESVI 514 >gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bryantella formatexigens DSM 14469] gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bryantella formatexigens DSM 14469] Length = 500 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 124/506 (24%), Positives = 225/506 (44%), Gaps = 68/506 (13%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P+ W V+ DSR + G +F+ G F+P E ++ + AY Sbjct: 28 PVTW-------VTCDSREVIPGTLFIC------KGAEFLP-------EYLLEAVAYGCIA 67 Query: 82 FSATIRSNTPI----LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135 + + R TP VV + R+ +++ ++ + PE + +TGT GK++ A ++ Sbjct: 68 YMSEERWGTPKTVRGFVVKDIRRAMAVVSAAFFEYEPEALKLTGITGTKGKTTTAWYL-- 125 Query: 136 ICQRSGLSSFQ-------IGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTH 184 R+ L +Q G S++ +F + R +TTP L + ++ + + G + Sbjct: 126 ---RAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVLYELIARVRAAGSEY 182 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 +++E SS L HR+DG+ G F N+ DHI H+ + YF +K+ L + Sbjct: 183 MTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRDFEDYFQSKLSLLRQC----G 238 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 A + D Y+++++K A A RV++ G + + + + KQ ++ Sbjct: 239 TACVNLDSDYAQQILKEARKAQ-RVVTFGQHHEAQLRYRILPEKDGKQTFEVTCPQFTEQ 297 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 F + G F + NA+ A G+ + + L + VPGR E + + VD Sbjct: 298 FSLKMRGSFNIENAVAAIAAAQVYGVPVHCMQKALAET-TVPGRMEVFESGDKKVCAIVD 356 Query: 362 YAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 YAH S + + + + + RII VFGC G + +R +G +A +D VT D+ Sbjct: 357 YAHNQLSFQKLFQTVFQEYRSFHRIITVFGCPGGKALNRRRELGVLAGMFSDYVYVTSDD 416 Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAIEML---NKQDVLVVAGKG 468 P ED +I E + ++E +R AIR+A+E ++ +++V G+G Sbjct: 417 PGMEDESRIADE----VGSYVEMAGGACDCIADRRIAIRSALEKAGSGTEKTLVLVLGRG 472 Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494 E + D +I+RE++ Sbjct: 473 SEKFQRIGRRLYAYPTDANIVRELMA 498 >gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus HN001] gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus GG] gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus HN001] gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus GG] gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Lactobacillus rhamnosus GG] Length = 517 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ A F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHFQVPGHG-TVYVD 374 Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L + R+ R++VV G GD+ +RP K+ +LA A +T D+P Sbjct: 375 YAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTTDDP 434 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP I EI I K +++ EAI AI+ +DV+VVAGKG + + Sbjct: 435 GYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQKIR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++E+ Sbjct: 495 GVNTPWPTDMAVVKEV 510 >gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus LMS2-1] gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus rhamnosus Lc 705] gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus LMS2-1] gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus rhamnosus Lc 705] Length = 517 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ A F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTAAYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHFQVPGHG-TVYVD 374 Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L + R+ R++VV G GD+ +RP K+ +LA A +T D+P Sbjct: 375 YAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTTDDP 434 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP I EI I K +++ EAI AI+ +DV+VVAGKG + + Sbjct: 435 GYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQKIR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++E+ Sbjct: 495 GVNTPWPTDMAVVKEV 510 >gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 141 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 9/122 (7%) Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDN Sbjct: 2 VDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDN 61 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 PR+E+P I +I+ G+ ++ G R EA+ AI DV+++AGKGHE Sbjct: 62 PRTEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQ 118 Query: 474 IV 475 IV Sbjct: 119 IV 120 >gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 255 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD---FSA 84 + + +++ DSR + G +FVA+ G++ DG FI +AI QGA A+V++ A QD A Sbjct: 19 KPLKQMTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGA-ALVLAEADEGQDEIELDA 77 Query: 85 TI------RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136 R+ +++V N + LS A Y E ++ VTGT+GK++ A + Q Sbjct: 78 KFAKYNLDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW 137 Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G S +G + Q+ TT S I + + L+ G ++E SSHGL Sbjct: 138 HNLLGGKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q+R + + FTNL RDH+DYH+T + Y AK RLF EL K ++ ADD +E Sbjct: 198 QYRAEALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTK--AQVLNADDEVGRE 255 >gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 338 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 165/341 (48%), Gaps = 18/341 (5%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D P++ + Sbjct: 4 DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYL 63 Query: 96 DNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST- 152 + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S +G Sbjct: 64 SQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNG 123 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL Sbjct: 124 LLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNL 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 RDH+DYH Y AK L+ AI+ ADD EV +R + ++V Sbjct: 184 SRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD----EVGRRWLASLPDAVAVSM 237 Query: 273 QGKF---IH---LKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +G H LK ++ + VTI + + + L G F V N L+A +A Sbjct: 238 EGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLA 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +G +L+ +L V GR E V T + VDYAHT Sbjct: 298 LGYPLTDLLKTAARLQPVCGRME-VFTAPGKPTVVVDYAHT 337 >gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans PW2] gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans PW2] Length = 518 Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 139/499 (27%), Positives = 222/499 (44%), Gaps = 57/499 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSS--AYSLQDFS 83 + +S DSR + +FV G F P AI +GA A + + A D S Sbjct: 40 VRGMSIDSRATEMDNLFVC------KGAAFKPAYLTAAIRRGASAFLCQTQAAAPACDLS 93 Query: 84 ATIRS-----NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQ 135 A +TP L+V + R ++L A +YG HP+ L + G +G + ++ Sbjct: 94 APAELAAAAPDTPGLIVSDLRASMALIAPIIYG-HPDRALRIVGVTGTKGKTTVTFMLRS 152 Query: 136 ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + +G+ +G + ++ TTP L + L G + + +E SS L Sbjct: 153 ILRAAGMEPSMVGSIEVDDGVERHESHNTTPEAPDLWRHLRNTVDSGRSVMIMEVSSQAL 212 Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 R+ GI L G F N+G DHI H + Y +K+R+F++ A++ D + Sbjct: 213 KYDRVLGITLDVGCFLNIGSDHISPIEHPNFEDYLASKLRIFDQ----SETAVVNLDTDH 268 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303 EV+KRA AG V I ++ A Q++++ E FD + Sbjct: 269 LVEVLKRAQTAGKLVT--------ISSRRTDADLRADQISVASEHIGFDIVERARRHEIA 320 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVD 361 + G F V NAL AA L +G+D + L + V PGR E S GRI VD Sbjct: 321 LGMSGLFNVDNALAAAALARELGVDYTAIATGLSRARV-PGRMERF--RSPDGRIVSLVD 377 Query: 362 YAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S ++ ++I + R +I VFG GD+ +R + +IA AD+ I T+D+P Sbjct: 378 YAHNELSFRLLFESIESEYPDRYVIAVFGAPGDKAFDRRHELPRIAGKSADLLIYTEDDP 437 Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHI 474 E E I A++ P F NR +A+ A E + ++++ KG E Sbjct: 438 GGERVEDICAQLADNTPTGTAFEIVVNREQAVERAFEAARSHEGPALVLLLAKGDEHRQR 497 Query: 475 VTNGEKKMSVDCDIIREIL 493 ++G +++ D ++ R L Sbjct: 498 RSDGYARIASDLELARRHL 516 >gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 300 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P++ + + LS A R Y + EN ++AVTGT+GK++ + Q Q G +S Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSA 139 Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +G + TT S + + L+ L +QG T ++E SSHGL QHR+ +K Sbjct: 140 VMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKF 199 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 A FTNL RDH+DYH Y AK L+ AI+ ADD Sbjct: 200 AASVFTNLSRDHLDYHGDMAHYEAAKWMLYST--HHHGQAIVNADD 243 >gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays] gi|194704536|gb|ACF86352.1| unknown [Zea mays] Length = 540 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 122/495 (24%), Positives = 225/495 (45%), Gaps = 41/495 (8%) Query: 13 ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ ++ + V D+ + AG +FV + EDG + +A +GA Sbjct: 12 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV---GEDGLAGLTEADKRGAV 68 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A+V +++ A +++VD+ L + + LY + N I+ VTGT G + Sbjct: 69 AVVADQDLNIEGTLAC----RALVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTDGVT 124 Query: 128 SVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTH 184 + V+ + + G+ + +G T SS D R S PI K ++ + G Sbjct: 125 TTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNGTEA 184 Query: 185 VSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKES 242 V +E + G+ +D I TN+ + T + Y + LF ++ P+ Sbjct: 185 VVLEKGTDGMPPSGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDPERH 244 Query: 243 PAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 ++ DD + + H+ S + +H K + +V + + Sbjct: 245 RKVVNIDDPSAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHGILE 304 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G +Y+ L + IA+G ++ +E++ +PGR E + G + VD Sbjct: 305 ISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAFG-VIVD 363 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 +A T +L +L +R + RI+ V GC G++++GKRP+M KIA D +D+ ++T DNP Sbjct: 364 HARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSDNPA 423 Query: 422 SEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAIEMLNKQ 459 +EDP I +++ G+ +E+ G+R+ A+R A+ M + Sbjct: 424 NEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEQG 483 Query: 460 DVLVVAGKGHETVHI 474 DV+V+ GKG++T I Sbjct: 484 DVVVITGKGNDTYQI 498 >gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii ATCC 33200] gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii ATCC 33200] Length = 509 Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 19 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 69 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ + R+ Sbjct: 70 GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 128 Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 L S +GP A LTTP + L + + G+TH+ +E SS ++ Sbjct: 129 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 185 Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240 R+ G+ G F N+ DHI + H Y + K++L F+E+ Sbjct: 186 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 245 Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + P IY A + + +K+ + R SV K K CA +++ I+ Sbjct: 246 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 303 Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 D+ + G+F N A++ AGL + A + H+ +PGR E + + Sbjct: 304 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 354 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G I VDYAH S+ ++ + R + +IIVV G GD+ +RP + A Sbjct: 355 KNHGTVI-VDYAHNKASMMALMSFMQREFNTPKIIVVVGAPGDKGVSRRPGFSESLTAYA 413 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D A +T D+P EDP I EI GI + +R +AI AI M +K D++++ G Sbjct: 414 DKAFLTTDDPGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 473 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + + + D + ++ Sbjct: 474 KGADPYQKIRGVDTPYPTDIKVAESVI 500 >gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii FI9785] gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii FI9785] Length = 523 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ + R+ Sbjct: 84 GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 142 Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 L S +GP A LTTP + L + + G+TH+ +E SS ++ Sbjct: 143 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 199 Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240 R+ G+ G F N+ DHI + H Y + K++L F+E+ Sbjct: 200 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 259 Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + P IY A + + +K+ + R SV K K CA +++ I+ Sbjct: 260 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 317 Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 D+ + G+F N A++ AGL + A + H+ +PGR E + + Sbjct: 318 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 368 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G I VDYAH S+ ++ + R + +IIVV G GD+ +RP + A Sbjct: 369 KNHGTVI-VDYAHNKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYA 427 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D A +T D+P EDP I EI GI + +R +AI AI M +K D++++ G Sbjct: 428 DKAFLTTDDPGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + + + D + ++ Sbjct: 488 KGADPYQKIRGVDTPYPTDIKVAESVI 514 >gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus johnsonii NCC 533] gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactobacillus johnsonii NCC 533] gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Lactobacillus johnsonii DPC 6026] Length = 523 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 130/507 (25%), Positives = 218/507 (42%), Gaps = 67/507 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSMAKDSGATCYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQ-----RS 140 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ + R+ Sbjct: 84 GMHALVVRDVTKAMALLSAAFY-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRT 142 Query: 141 GLSSFQ---IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 L S +GP A LTTP + L + + G+TH+ +E SS ++ Sbjct: 143 ALFSSVDDIVGPKPEDKFKAS---LTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKN 199 Query: 198 RLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELLPK 240 R+ G+ G F N+ DHI + H Y + K++L F+E+ Sbjct: 200 RVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA 259 Query: 241 ES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + P IY A + + +K+ + R SV K K CA +++ I+ Sbjct: 260 ATTTTNPDSIYLFARNDFENPNLKQPID--FRFQSVETDMKETEFKLFCASDKAKKLPIA 317 Query: 295 VEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 D+ + G+F N A++ AGL + A + H+ +PGR E + + Sbjct: 318 G-----DYTLQMIGDFNEMNGTAAIIGAGLAGENYEECAKGIRHV----TIPGRMEALPS 368 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G I VDYAH S+ ++ + R + +IIVV G GD+ +RP + A Sbjct: 369 KNHGTVI-VDYAHNKASMMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYA 427 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D A +T D+P EDP I EI GI + +R +AI AI M +K D++++ G Sbjct: 428 DKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487 Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493 KG + + + D + ++ Sbjct: 488 KGADPYQKIRGVDTPYPTDIKVAESVI 514 >gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum DSM 5501] Length = 468 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/373 (24%), Positives = 172/373 (46%), Gaps = 23/373 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V+ DSR + AG FVAI G ++DG+ +I A+ QGAE + Y+ ++ Sbjct: 7 ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVV-----YTEREID---HRE 58 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGLSSFQI 147 ++ VDN RK L+ A+++Y E++ V T + ++++ G ++ I Sbjct: 59 VQVVKVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLI 118 Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + ++ LTTP + + + V ++E SSHG+ HR++G+ Sbjct: 119 GTVKIKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDI 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +TNL +DH+D H+ + Y K LF++ +ES A+I DD Y+ +M Sbjct: 179 VVYTNLTKDHLDLHEDFEDYLATKKELFKQ-AGEESTALINLDDEYADRIMS---GLSAE 234 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGL 321 V++ G+ + ++ A ++ +E + F+ L G +YNAL AA + Sbjct: 235 VITYGFSDR-ADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAV 293 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + G+ + L++ + R E + + I D AH + + + I+ + Sbjct: 294 GLIYGLSVEEIKAQLKEFNPFFRRLEVIYDDKF--TIIDDCAHNPGNYRAVFETIKELDY 351 Query: 382 GRIIVVFGCGGDR 394 R+ ++ G+R Sbjct: 352 DRLYIINAIRGNR 364 >gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 394 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 186/403 (46%), Gaps = 39/403 (9%) Query: 94 VVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V + +K +SL A Y +P++ +L TGT GK++ A F I + S + Sbjct: 1 MVTDIKKAMSLIAMAFY-DNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMN 59 Query: 151 STIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +T+ +F + ++LTTP + L ++ G+TH+ +E SS R+ G+ G Sbjct: 60 TTLDGKTFFK-SQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGV 118 Query: 209 FTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRAHNA 263 F N+ DHI H T + YF K L E + I D + + +V ++ H Sbjct: 119 FLNISPDHIGPIEHPTFEDYFYHKRLLMEN---SRAVVINSGMDHFLFLADQVAEQEH-- 173 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVYNALVAAG 320 F I Q + G+ +D L G F NA+ A Sbjct: 174 -----------AFYGALSDNQITTSQAFSFEANGQLAGHYDI--QLIGHFNQENAMAAGL 220 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 C +G A + + + K V PGR E V T + +++VDYAH +SLE +L + Sbjct: 221 ACFRLGASLADIQKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQ 278 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGF 439 +G ++++ G G++ + +R G + ++ ++ T D+P EDPE I EI I Sbjct: 279 TGNLVLILGAPGNKGESRRADFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRP 338 Query: 440 IE-KGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480 I+ +R +AI+ A+ + +D +++AGKG + IV GEK Sbjct: 339 IDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIV-KGEK 380 >gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 172 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 7/144 (4%) Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 +L+ L KL GR + +G + VDYAHT ++LE +L+ +R GR++ +FGCG Sbjct: 1 MLKVLPKLEGPVGRMQRLGGCRTKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCG 60 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRI 446 GDRD+GKRP+M ++ LAD VTDDNPRSE P I +I G FIE R Sbjct: 61 GDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDIRPGFAAADKVRFIE--GRG 118 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHE 470 +AI I N DV+V+AGKGHE Sbjct: 119 QAIAQLIASANADDVVVLAGKGHE 142 >gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lautropia mirabilis ATCC 51599] gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lautropia mirabilis ATCC 51599] Length = 679 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 23/213 (10%) Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 ++H +QQ ++ + G F + NAL AAG ++G + ++E L +LH VP Sbjct: 434 SVHGRQQRLQAMFRNVATLRLNVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVP 493 Query: 344 GRFEFVG------------------TNSRGGRIYVDYAHTSNSLEMILKNIRTITS---G 382 GR E VG +++ + VDYAHT ++L +L +R I G Sbjct: 494 GRMEIVGLPAAQVSDAGEAAPAAAISSTACPLVVVDYAHTPDALTNVLAALRDIAGQRGG 553 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440 ++ VFG GG+RD+GKRP M + +AD +VT DNPR EDP +I A++ G+ P + Sbjct: 554 QLCCVFGAGGNRDRGKRPEMARAVEAVADRVVVTSDNPRDEDPAQIIADVCQGLSKPAWR 613 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 + +R AI AI DV+++AGKG ET Sbjct: 614 TEADRRVAIDAAIAQAAPADVVLIAGKGRETTQ 646 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 127/323 (39%), Gaps = 92/323 (28%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA------------------QGAEAIVVSSA 76 SDSR + G F A+ G ++DG FI QA+ AE VV + Sbjct: 33 SDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQAEDAAEGDVVQAE 92 Query: 77 YS----------LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGT 123 ++ L A I+ P+ V L A Y HP +L AVTGT Sbjct: 93 HAACGNFDYFKNLPTLPAGIQ--VPVCYVPCLGSQLGALADEYY-DHPSQVLDVVAVTGT 149 Query: 124 SGKSS----VASFVQQICQRSGLS-----SFQIGPTSTISS-----FA------------ 157 +GK+S +A V R+G + + P ++ S+ FA Sbjct: 150 NGKTSTTHWIAQGVNDRLARTGDAQAVDANTPSRPAASASTQRPAEFAGLVIALDGDADA 209 Query: 158 --QDNR---------------------LTTPSPIYLAKALSYL---SSQGVTHVSVEASS 191 Q R LTTP P+ L + V V++EASS Sbjct: 210 AMQPGRGRGVVIGTNGVGTPGALEYIGLTTPDPLTLQTLFQRFRADTEAPVGVVAMEASS 269 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 GL Q R+ G + FTNL RDH+DYH + QAY AK+ LF P A++ D Sbjct: 270 IGLVQGRMQGTCIHTAVFTNLTRDHLDYHGSMQAYGAAKVGLFS--WPTLQAAVVNLGDP 327 Query: 252 YSKEVMK--RAHNAGCRVLSVGY 272 + E+++ H A R+ +GY Sbjct: 328 LATEIIEVLHRHTAAPRI--IGY 348 >gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes FSL F2-515] Length = 242 Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 18/247 (7%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + I+ +TGT+GK++V Sbjct: 65 IAEKQ---------VDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESP-- 243 SSH L Q R+ G F NL +DH+DYH T + Y NAK LF +L +P Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235 Query: 244 AIIYADD 250 A++ ADD Sbjct: 236 AVLNADD 242 >gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii 269-3] gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii SJ-7A-US] gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 1153] gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii 269-3] gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 1153] gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii SJ-7A-US] gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] Length = 516 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 130/508 (25%), Positives = 217/508 (42%), Gaps = 69/508 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K++ +S DSR IQ +F G F P ++ GA V + Sbjct: 30 KMDYISYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGATCYVAEQPFPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR-- 139 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ I + Sbjct: 80 ---KGMHALVVRDVTKAMALLSAAFY-RFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMN 135 Query: 140 SGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G ++ + +D + LTTP + L + + G+TH+ +E SS + Sbjct: 136 GGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKK 195 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +R+ G+ G F N+ DHI + H Y + K+ +LL II A+ + Sbjct: 196 NRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFS 251 Query: 255 EVMKRA-----------------HNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTI 293 EV A N +V L + I K + + + Sbjct: 252 EVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHL 311 Query: 294 SVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++EG ++ + G+F N A++ AGL A +A + H+ +PGR E Sbjct: 312 AIEG---EYTLDMIGDFNEINGTAAIIGAGLGGANHDHAAEGIRHV----TIPGRMETEK 364 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + G + VDYAH S+ ++ ++ ++ +IIVV G GD+ +RP + Sbjct: 365 TKNHG-LVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVF 423 Query: 410 ADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD A +T D+P EDP E+I A I H + +R +AIR AI M K DV+++ Sbjct: 424 ADKAFLTTDDPGFEDPMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLIC 483 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + V D + R ++ Sbjct: 484 GKGADPFQKVRGINTPYPSDIVVARNVI 511 >gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus lacrimalis 315-B] Length = 509 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 113/466 (24%), Positives = 209/466 (44%), Gaps = 52/466 (11%) Query: 13 ELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 E++ + I ++ + + +I+ +S +S +I+A +FVAI G DGH +I A GA Sbjct: 5 EILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKNHGAI 64 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGK 126 VV +DF P + VDNTRK L+ A Y K P ++ +T T+GK Sbjct: 65 VAVV------EDFKEVY---IPQIKVDNTRKSLADLAKNFY-KDPSKDLKVIGITATNGK 114 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVT 183 ++ + +++I + +++ IG T FA N LTTP + L K + + ++ Sbjct: 115 TTTSFMLKKILSENKINTGIIGTVYT--KFADVNIPSILTTPESLELQKYFKEMLDKNIS 172 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 HV +E SS R++ I SF NL R+HID H + + YF K ++ K S Sbjct: 173 HVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN-AKKGSF 231 Query: 244 AIIYADDAYSKEVMKRAHNAGCRV---------------LSVGYQGKFI-HLKKVCAIHN 287 A++ D+ Y + ++ + + LS G+ GKF+ H+ N Sbjct: 232 ALLNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGF-GKFMFHV-------N 283 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+++ + F+ G V N ++A L + + +D ++L LE V RFE Sbjct: 284 RDIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFE 343 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406 + ++ D+ ++++ + + + + +++ G+R + R + ++ Sbjct: 344 LIY--DEKFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLC 401 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAI 449 L + T SED K + ++ + + K N IE + Sbjct: 402 FWLKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETV 447 >gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 138 Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats. Identities = 57/120 (47%), Positives = 78/120 (65%), Gaps = 9/120 (7%) Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR Sbjct: 1 YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPR 60 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +E+P I +I+ G+ ++ G R EA+ AI DV+++AGKGHE IV Sbjct: 61 TEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 117 >gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris SK11] gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp. cremoris SK11] Length = 483 Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 125/485 (25%), Positives = 213/485 (43%), Gaps = 77/485 (15%) Query: 21 FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W +E +++S DSR +F A G F + + A VS Sbjct: 26 YYFNWPKEVNFDQLSYDSRKSTKDTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 D+ + P ++V + ++ ++L A+ Y K P+N LA+TGT GK++ A F + I Sbjct: 77 -DYEVAL----PAIIVTDVKRAMALIAANFY-KFPQNKLKTLALTGTKGKTTSAYFAKSI 130 Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T+ + Q+ + LTTP + L + ++ G+TH+ +E SS Sbjct: 131 LDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVMEVSSQA 190 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF---------------NAKMRLF-- 234 R+ G+ G F N+ DHI H T + YF NA+M F Sbjct: 191 YKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANAEMNHFAI 250 Query: 235 --EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 EEL ++ P Y D+ +K + + G ++ G Sbjct: 251 IKEELNERKIPHAFYGADSENKIIESK----GLHFVTDG--------------------- 285 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 SV G +F L G F NAL A A+G + + L +VPGR E + T Sbjct: 286 -SVSG---EFDIRLLGRFNQENALATALATKALGASFENIRQGLASA-IVPGRMELL-TA 339 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G IY+DYAH SLE +++ + +G++ +V G G++ + +R G++ + + Sbjct: 340 KNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRL 399 Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469 I+T D+ E+P+ I EI + ++ + +R AI+ AI + N D +++AGKG Sbjct: 400 NVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459 Query: 470 ETVHI 474 + + Sbjct: 460 DMFQL 464 >gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Yersinia enterocolitica W22703] Length = 298 Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 128/268 (47%), Gaps = 19/268 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVAIVG++ DG +IPQAIAQG A+V + D S Sbjct: 19 ERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ + N + LS A + Y P L + G +G + + Q + Q + + Sbjct: 79 MHGVPVIYLRNLNQHLSKLAGQFY-HQPGAALRLVGVTGTNGKTTTTQLLAQWAKM---- 133 Query: 147 IGPTSTISSFAQDNRL--------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G TS + + L TT S + + L L QG T ++E SSHGL Q+R Sbjct: 134 LGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNR 193 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + A FTNL RDH+DYH +Y AK LF + II ADD + + Sbjct: 194 VAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFST--HQSEHKIINADDEVGRRWLG 251 Query: 259 RAHNAGC----RVLSVGYQGKFIHLKKV 282 + A + VG+ G ++ +V Sbjct: 252 QLPQAVAVSMENNIPVGWNGPWLSASQV 279 >gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus JV-V01] gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus 125-2-CHN] gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-1A-US] gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-3A-US] gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus 214-1] gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus crispatus CTV-05] gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus JV-V01] gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus 125-2-CHN] gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-1A-US] gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus crispatus MV-3A-US] gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus 214-1] gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus crispatus CTV-05] Length = 523 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 75/488 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K++ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEE 236 ++R+ G+ G F N+ DHI + H Y + K++L F+E Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDE 252 Query: 237 LLPKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + P IY A D + +K+ + R S K VCA ++ Sbjct: 253 VYAAATTTTNPDSIYLFARDNFENPDLKQPID--FRFSSEQLDMKETRFNLVCASDKARK 310 Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+ D+ + G+F N A++ AGL G++ + + + +PGR + Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGRMQ 361 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 T + G + VDYAH S+ +++ +R +IIVV G GD+ +RP + Sbjct: 362 TERT-KKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 420 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 AD A +T D+P EDP+ I EI GI + +R +AI AI M DV+ Sbjct: 421 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVV 480 Query: 463 VVAGKGHE 470 ++ GKG + Sbjct: 481 LICGKGAD 488 >gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus megaterium DSM 319] Length = 287 Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + IN ++ S+ + G +F +I G EDGH +I +AIA+GA A+ +S L+ S T Sbjct: 22 QTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSIEKLRLLS-TQY 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 S+ L VD+ RK ++ F+ + E I + VTGT+GK++VA++V+ + L + Sbjct: 81 SHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRSLLTLLKLPTG 140 Query: 146 QIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 IG T SS + + TTP + L K L ++G +E SS +DQ R++ Sbjct: 141 SIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEVSSIAIDQQRVEN 200 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 I TNL +H++YH+T + Y KM+LF++ A+I DD Sbjct: 201 IYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQ----AKHAVINIDD 245 >gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 516 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 133/513 (25%), Positives = 219/513 (42%), Gaps = 75/513 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ++ VS DSR +Q +F K G ++ A GA A V Y Sbjct: 28 QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 + L+V N K ++L ++ Y + P++ ++ TGT GK++ A F++ + Sbjct: 80 ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130 Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 L G T+ +SS + LTTP + L + + G+TH+ +E SS Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 ++R+ G+ G F N+ DHI + H + Y + K+ +LL II A+ Sbjct: 191 QAYKKNRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246 Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303 D Y+ ++ G++ LKK K T E K F Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303 Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345 P+ GE+ + +N A G I G+ D A + H+ +PGR Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 E V T + G I VDYAH S+ +++ +R T+ R+IVV G GD+ +RP + Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P E+ + I EI GI + + +R +AI+ AI D Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+++ GKG + + + + D I R+++ Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511 >gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase [Lactobacillus crispatus ST1] gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus crispatus ST1] Length = 523 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 127/488 (26%), Positives = 214/488 (43%), Gaps = 75/488 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K++ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEE 236 ++R+ G+ G F N+ DHI + H Y + K++L F+E Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDE 252 Query: 237 LLPKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + + P IY A D + +K+ + R S K VCA ++ Sbjct: 253 VYAAATTTTNPDSIYLFARDNFENPDLKQPID--FRFSSEQLDMKETRFNLVCASDKARK 310 Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+ D+ + G+F N A++ AGL G++ + + + +PGR + Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGRMQ 361 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 T + G + VDYAH S+ +++ +R +IIV+ G GD+ +RP + Sbjct: 362 TERT-KKHGMVVVDYAHNKASMMALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESL 420 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 AD A +T D+P EDP+ I EI GI + +R +AI AI M DV+ Sbjct: 421 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVV 480 Query: 463 VVAGKGHE 470 ++ GKG + Sbjct: 481 LICGKGAD 488 >gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus casei ATCC 334] gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC 334] Length = 517 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ + F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374 Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L ++ R++VV G GD+ +RP K+ + A A +T D+P Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP E+I ++I H + +R +AI AI D++VVAGKG + V Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKGADPYQKVR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++++ Sbjct: 495 GVNTPWPTDMAVVKQV 510 >gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 516 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 133/513 (25%), Positives = 219/513 (42%), Gaps = 75/513 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ++ VS DSR +Q +F K G ++ A GA A V Y Sbjct: 28 QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 + L+V N K ++L ++ Y + P++ ++ TGT GK++ A F++ + Sbjct: 80 ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130 Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 L G T+ +SS + LTTP + L + + G+TH+ +E SS Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 ++R+ G+ G F N+ DHI + H + Y + K+ +LL II A+ Sbjct: 191 QAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246 Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303 D Y+ ++ G++ LKK K T E K F Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303 Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345 P+ GE+ + +N A G I G+ D A + H+ +PGR Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 E V T + G I VDYAH S+ +++ +R T+ R+IVV G GD+ +RP + Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P E+ + I EI GI + + +R +AI+ AI D Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+++ GKG + + + + D I R+++ Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511 >gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 517 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ + F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374 Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L ++ R++VV G GD+ +RP K+ + A A +T D+P Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP E+I ++I H + +R +AI AI D++VVAGKG + V Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKGADPYQKVR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++++ Sbjct: 495 GVNTPWPTDMAVVKQV 510 >gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus casei BL23] gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Lactobacillus casei BL23] gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus casei LC2W] gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactobacillus casei BD-II] Length = 517 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ + F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPESDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374 Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L ++ R++VV G GD+ +RP K+ + A A +T D+P Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP E+I ++I H + +R +AI AI D++VVAGKG + V Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGADPYQKVR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++++ Sbjct: 495 GVNTPWPTDMAVVKQV 510 >gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 517 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 195/436 (44%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ + F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374 Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L ++ R++VV G GD+ +RP K+ + A A +T D+P Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP E+I ++I H + +R +AI AI D++VVAGKG + V Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGADPYQKVR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++++ Sbjct: 495 GVNTPWPTDMAVVKQV 510 >gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris MG1363] gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 483 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 124/485 (25%), Positives = 213/485 (43%), Gaps = 77/485 (15%) Query: 21 FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W +E +++S DSR +F A G F + + A VS Sbjct: 26 YYFNWPKEVNFDQLSYDSRKSTKDTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 D+ + P ++V + ++ ++L A+ Y + P+N LA+TGT GK++ A F + I Sbjct: 77 -DYEVAL----PAIIVTDVKRAMALIAANFY-EFPQNKLKTLALTGTKGKTTSAYFAKAI 130 Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + T+ + Q+ + LTTP + L + ++ G+TH+ +E SS Sbjct: 131 LDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVMEVSSQA 190 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYF---------------NAKMRLF-- 234 R+ G+ G F N+ DHI H T + YF NA+M F Sbjct: 191 YKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANAEMNHFAI 250 Query: 235 --EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 EEL ++ P Y D+ +K + + G ++ G Sbjct: 251 IKEELNERKIPHAFYGADSENKIIESK----GLHFVTDG--------------------- 285 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 SV G +F L G F NAL A A+G + + L +VPGR E + T Sbjct: 286 -SVSG---EFDIRLLGRFNQENALATALATKALGASFENIRQGLASA-IVPGRMELL-TA 339 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 G IY+DYAH SLE +++ + +G++ +V G G++ + +R G++ + + Sbjct: 340 KNGAHIYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRL 399 Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469 I+T D+ E+P+ I EI + ++ + +R AI+ AI + N D +++AGKG Sbjct: 400 NVILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGA 459 Query: 470 ETVHI 474 + + Sbjct: 460 DMFQL 464 >gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7] Length = 514 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 124/513 (24%), Positives = 217/513 (42%), Gaps = 51/513 (9%) Query: 8 YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIA 65 Y D ++ L+ M R E I ++ DSR + G +F+ KE ++ AI Sbjct: 9 YADLLSSVDMLAEAEMMGRDETVITYLTYDSRAVTPGTLFICKGAAFKEQ---YLENAIR 65 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123 GA A V Y + + P L+V + RK + A + K + ++ GT Sbjct: 66 AGAVAYVSEVQYETE-------TKVPCLIVKDIRKAMPPLAEMYFNKAWQELTVIGFGGT 118 Query: 124 SGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYL 177 GKS+ A +++ I + + S+I + Q++ +TTP + L + + + Sbjct: 119 KGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESVELHEHMRHA 178 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235 G+T++ +E SS L R++ ++ + N+ DHI H+ + Y ++KM++F Sbjct: 179 VDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDYISSKMKMF- 237 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQ 289 L K+ A++ D + + +K A +AG + S + G IH Sbjct: 238 -ALAKQ--AVVNLDADFVERALKAAEDAGSFKTFSLKDPSADFYGYNIH-------KEDG 287 Query: 290 QVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 ++ SV+ FD F +PG F V NA+ + I + L + GR E Sbjct: 288 EIIFSVKCDKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRAR-SSGRME 346 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + + VDYAH S E + + R I+ +FGC G + +R +G IA Sbjct: 347 LYTSADKRVTAVVDYAHNKLSFEKLFGSTREEYPDHDIVAIFGCPGYKAYIRRKDLGLIA 406 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQD 460 + + + ++P E ++I +I + IE +R AI AI + Sbjct: 407 GEYSKKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIE--DRGVAIHKAIMECKRPT 464 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 VL++ GKG+ET D + ++E L Sbjct: 465 VLLITGKGNETRQKYGTIYADCRTDVEYVKEYL 497 >gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus amylolyticus DSM 11664] gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus amylolyticus DSM 11664] Length = 551 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 129/486 (26%), Positives = 203/486 (41%), Gaps = 75/486 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 KI VS DSR IQ +F G F P ++ GA V Y Sbjct: 58 KIEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 107 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + Sbjct: 108 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGM----- 158 Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 L G T+ ISS + LTTP + L + + G+TH+ +E SS Sbjct: 159 LDQMNGGRTALISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSS 218 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------F 234 ++R+ G+ G F N+ DHI + H Y + K++L F Sbjct: 219 QAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAESDHF 278 Query: 235 EELLPKES----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 +E+ + P IY + + E K R S + K C +Q Sbjct: 279 DEIYAAATTTTNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQ 338 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+ E + + G+F NA ++ AGL A + H+ +PGR + Sbjct: 339 LPINGE-----YTLQMIGDFNESNATAAIIGAGLAGMSHDACAKGIRHV----TIPGRMQ 389 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 T G + VDYAH S+ ++ + R + +IIVV G GD+ +RP + Sbjct: 390 TEMTKDHG-MVIVDYAHNKASMMALMSFVKREFNNPKIIVVVGAPGDKGVSRRPGFSESL 448 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 AD A +T D+P EDP+ I EI GI + +R +AI AI M K DV+ Sbjct: 449 TAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVV 508 Query: 463 VVAGKG 468 ++ GKG Sbjct: 509 LICGKG 514 >gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str. Zhang] gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str. Zhang] Length = 517 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 194/436 (44%), Gaps = 46/436 (10%) Query: 93 LVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V N K +++ ++ + +P++ ++A TGT GK++ + F + I + + Sbjct: 85 LIVRNITKAMAILSAAFF-DYPQDDLFVIAYTGTKGKTTASYFTEAILNEARPRHIALFS 143 Query: 150 T-STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 T T+ D R LTTP + L + + G+TH+ +E SS ++R+ G+ Sbjct: 144 TIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLRNRVFGLTY 203 Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA-----DDAYSKEVM 257 G F N+ DHI + H T Y + K+ +LL +I A D Y+ Sbjct: 204 DVGFFLNITPDHIGPNEHPTFANYLHNKL----QLLVNARKVVINAETEHFDQVYAAATT 259 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---------VTISVEGKDFD----FLF 304 + S G++ K + +++ V ++ + + + Sbjct: 260 TTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIGGHYSL 319 Query: 305 PLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 L G+F NA ++ AGL G+D++ + + K+ + PGR E G +YVD Sbjct: 320 ALIGDFNESNATAAIIGAGLA---GVDASAAVPGIAKVKI-PGRMEHTKVAGHGA-VYVD 374 Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S++ +L ++ R++VV G GD+ +RP K+ + A A +T D+P Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDDP 434 Query: 421 RSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP E+I ++I H + +R AI AI D++VVAGKG + V Sbjct: 435 GYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKGADPYQKVR 494 Query: 477 NGEKKMSVDCDIIREI 492 D +++++ Sbjct: 495 GVNTPWPTDMAVVKQV 510 >gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola] Length = 292 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 15/263 (5%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK +L Y FP + N P ++K + +S DSR + + +F+AI G K+DG+ FI Sbjct: 1 MKKNNLKYILFPWIKNT----P----QKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---I 117 +A+ + AI+ + + +N PIL + +S A+R+Y K P I Sbjct: 53 FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVY-KEPAKTLKI 111 Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176 + VTGT+GK++V + Q + G +G + + + TT S I + L Sbjct: 112 IGVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHI 171 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + V++E SSHGL Q+R+ I G FTNL +DH+DYH+ + Y +AK F + Sbjct: 172 AAKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQ 231 Query: 237 LLPKESPAIIYADDAYSKEVMKR 259 K I+ A+D Y+K+ +++ Sbjct: 232 --HKIKKIILNANDKYAKKWLRK 252 >gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Carnobacterium sp. AT7] Length = 535 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 122/507 (24%), Positives = 228/507 (44%), Gaps = 68/507 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 + E IN+++ S+ ++ +FV I G++ DGH + A++QGA I+V ++D Sbjct: 23 ELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYAKHAVSQGATVIIVEQF--IEDL- 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 + L V N+R+ L++ +S + + ++ + VT T+GK+++ ++I + Sbjct: 80 -----DVLQLKVSNSREVLAILSSNFFDQPSKSMSLFGVTATNGKTTITYMTEEIFKAYQ 134 Query: 142 LSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L S IG I + +RLTTP L + + + Q +THVS+E SS L+ R+ Sbjct: 135 LKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKMRDQEITHVSMEVSSSALELKRVY 194 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 +FTN+ +HI H + +AYF+AK L K S AI+ D+ ++ A Sbjct: 195 HTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRN-ASKMSTAILNLDEQL---LIPLA 250 Query: 261 HNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTIS----------VEGKDFDFLFPL 306 +V++ G + K + + + +VTI +E FD + Sbjct: 251 EETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSGERIEPTSFDLELSI 310 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDY 362 PG +YNAL A + G+ + + LE++++ V RF+ + + ++ D Sbjct: 311 PGYHSIYNALTA----LVTGLVNDIPLEYVQRGIKNFRGVERRFQILY--DKEFKVIDDL 364 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIMGKIA-----LDLADIAIVT 416 N+++ ++ I + + +V G I +A L ++ I + T Sbjct: 365 LLNQNNIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIAESLAKWFHELKISKIILTT 424 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIE---------AIRTAIEMLNKQDVLVVA 465 S K A + F++ K + IE A+R +E LN++DVL+++ Sbjct: 425 ----ASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFGVERLNEEDVLLIS 480 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 G H + G +K ++++EI Sbjct: 481 G-----AHSMDQGARKT---LELLKEI 499 >gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp. ART55/1] Length = 507 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 119/492 (24%), Positives = 206/492 (41%), Gaps = 56/492 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +S+ + G FV + KED ++ AIAQGA + Y D P Sbjct: 35 ITINSKDVVPGTFFVCKGASFKED---YLKSAIAQGAIVYLSQQKYDDVDI--------P 83 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAV----------TGTSGKSSVASFVQQICQRSG 141 ++V++ RK ++L A +G +N+ V K + + C S Sbjct: 84 YIIVNDIRKAMALAARWFFGNPGDNMTKVGITGTKGKTTVTFVMKDILDKYTDNRC--SA 141 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S+ +I + + + LTTP PI L +G TH +E SS + +R+ G Sbjct: 142 FSTHEID----VGTKVFETTLTTPEPIELQTYFDMAVDEGCTHCIMEVSSQAMKMNRIYG 197 Query: 202 IKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY------- 252 G FTN+ DHI H + + Y K+ ++ ++Y+D Y Sbjct: 198 EHYKVGVFTNIDYDHISPTEHASMEDYLGCKVSFLKQC----DNVVLYSDTRYFETIYNE 253 Query: 253 --SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLF 304 K V+ L F +IHN+ + G++ + Sbjct: 254 VRDKHVVVYGSKESIEKLMSRDDDFFEKDTDFASIHNEDLTDHNSYFELIYGGENRAYNT 313 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 L G++ V N + A + IGI + + + ++V PGR + R +DYAH Sbjct: 314 NLIGDYNVENIVAAIISSLLIGIPNDQIRSSIRDVYV-PGRLQVYHWKDRT--FMIDYAH 370 Query: 365 TSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 S+ + + ++ T+ I VVFGCGG+R + +R MG++A AD ++T ++P E Sbjct: 371 NYISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDMGRLAEQYADKVVLTMEDPGFE 430 Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 E+I EI I P +I +R +A+ A++ ++++ GKG E+ + + Sbjct: 431 SCEEICKEIKQYITKPCYI-IVDREQALTRALDEAQPGELVITTGKGIESTQRINGTFVQ 489 Query: 482 MSVDCDIIREIL 493 D +I L Sbjct: 490 CHSDAQVIEHWL 501 >gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T85] gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T85] Length = 417 Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 103/360 (28%), Positives = 165/360 (45%), Gaps = 21/360 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 41 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 97 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 98 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 156 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 157 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 215 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRA 260 + G+FTNL RDH+D+H + YF AK LF+ + + A++ DD + + RA Sbjct: 216 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA 275 Query: 261 HNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + ++V + H + +Q I G LPG + V N L Sbjct: 276 AD----AITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCL 331 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 VA + +G+ + L ++ VPGR E + +G VDYAH +L +L + Sbjct: 332 VALAILDTVGVSPEQAVPGLREIR-VPGRLEQI-DRGQGFLALVDYAHKPEALRSVLTTL 389 >gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus helveticus MTCC 5463] Length = 523 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 130/513 (25%), Positives = 216/513 (42%), Gaps = 79/513 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K+ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS IGP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVIGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 ++R+ G+ G F N+ DHI + H Y + K+ +LL II A+ A Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETA 248 Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288 + EV A R S K K CA Sbjct: 249 HFNEVYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKA 308 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +++ I+ D+ + G+F N A++ AGL G++ + + + +PGR Sbjct: 309 RKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404 + T + G + VDYAH S+ ++ +++ + +IIVV G GD+ +RP + Sbjct: 360 MQTERTKNHG-MVVVDYAHNKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P EDP+ I EI GI + +R +AI AI M D Sbjct: 419 SLSAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+++ GKG + + D + +E++ Sbjct: 479 VVLICGKGADAFQKIRGVNTPYPSDIVVAQEVI 511 >gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 516 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 133/509 (26%), Positives = 214/509 (42%), Gaps = 73/509 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + VS DSR +Q +F K G ++ A GA A V Y Sbjct: 31 MEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG------- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSF 145 + L+V N K ++L ++ Y +++ V TGT GK++ A F++ + L Sbjct: 80 TGMHALIVRNVSKAMALLSAAFYSFPQDDLFLVGFTGTKGKTTSAYFLKGM-----LDQL 134 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ +SS + LTTP + L + + G+TH+ +E SS Sbjct: 135 NGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYK 194 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---- 249 + R+ G+ G F N+ DHI + H + Y + K+ +LL II A+ Sbjct: 195 KSRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAETDRF 250 Query: 250 -DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----- 303 D Y+ ++ G++ LKK K T E K F Sbjct: 251 ADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTTASSK 307 Query: 304 ---FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGRFEFV 349 P+ GE+ + +N A G I G+ D A + H+ +PGR E V Sbjct: 308 AHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGRMETV 363 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 T + G I VDYAH S+ +++ +R T+ R+IVV G GD+ +RP + Sbjct: 364 -TTQKHGLIVVDYAHNKASMLALMRFMRREFTTPRVIVVVGAPGDKGISRRPGFSESLTA 422 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 AD A +T D+P E+ + I EI GI + + +R +AI+ AI DV+++ Sbjct: 423 EADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPDDVVLL 482 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493 GKG + + + + D I R+++ Sbjct: 483 CGKGADAFQKIRGVDTPYAGDIVIARQVI 511 >gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor] gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor] Length = 761 Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 120/501 (23%), Positives = 223/501 (44%), Gaps = 53/501 (10%) Query: 13 ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ ++ + V D+ + AG +FV + EDG + +A +GA Sbjct: 233 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV---GEDGLAGLTEADKRGAV 289 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS- 128 A+V +++ A +++VD+ L + + LY + P +AV G +G Sbjct: 290 AVVADQDLNIEGTLAC----RALVIVDDILAALRVLPACLY-RRPSTDMAVIGVTGTDGV 344 Query: 129 ------VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 V + + + R+GL +G + S+ + PI K ++ + G Sbjct: 345 TTTTHLVKAMYEAMGVRTGLVGV-LGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNGT 403 Query: 183 THVSVEASSHGLDQHRLDG-IKLIAGSFTNL----GRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E ++ G+ + I TN+ G D + Y Q Y ++ LF + Sbjct: 404 EAVVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQ----YMSSMASLFSRM 459 Query: 238 L-PKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + P ++ DD + + H+ S + +H K + +V + Sbjct: 460 VDPDRHRKVVNIDDPCAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQT 519 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G +YN L + IA+G ++ +E++ +PGR E + Sbjct: 520 PHGILEISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELIDEEQAF 579 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 G + VD+A T +L +L +R + RI+ V GC G++++GKRP+M KIA D +D+ ++ Sbjct: 580 G-VIVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVML 638 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI-------EAIRTAI 453 T DNP +EDP I +++ G+ +E+ G+R+ A+R A+ Sbjct: 639 TSDNPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAV 698 Query: 454 EMLNKQDVLVVAGKGHETVHI 474 M + DV+V+ GKG++T I Sbjct: 699 AMGEQGDVVVITGKGNDTYQI 719 >gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus helveticus DPC 4571] gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus helveticus DSM 20075] gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus DPC 4571] gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus helveticus DSM 20075] gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus H10] gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase [Lactobacillus helveticus H10] Length = 523 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 130/513 (25%), Positives = 216/513 (42%), Gaps = 79/513 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K+ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS IGP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVIGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 ++R+ G+ G F N+ DHI + H Y + K+ +LL II A+ A Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETA 248 Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288 + EV A R S K K CA Sbjct: 249 HFNEVYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKA 308 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +++ I+ D+ + G+F N A++ AGL G++ + + + +PGR Sbjct: 309 RKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404 + T + G + VDYAH S+ ++ +++ + +IIVV G GD+ +RP + Sbjct: 360 MQTERTKNHG-MVVVDYAHNKASMMALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P EDP+ I EI GI + +R +AI AI M D Sbjct: 419 SLSAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+++ GKG + + D + +E++ Sbjct: 479 VVLICGKGADAFQKIRGVNTPYPSDIVVAQEVI 511 >gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactococcus lactis subsp. lactis Il1403] gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Lactococcus lactis subsp. lactis CV56] Length = 483 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 129/492 (26%), Positives = 215/492 (43%), Gaps = 91/492 (18%) Query: 21 FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W +E +++S DSR +F A G F + + A VS Sbjct: 26 YYFNWPKEVNFDQLSYDSRKSTENTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 D+ + P ++V + ++ ++L A+ Y P+N LA+TGT GK++ A F + I Sbjct: 77 -DYEVAL----PAIIVTDVKRAMALIAASFY-DFPQNKLKTLALTGTKGKTTSAYFAKAI 130 Query: 137 CQRSGLSSFQIGPTSTISSFAQ---------DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 L G T+ +S+ AQ + LTTP + L + ++ + G+TH+ + Sbjct: 131 -----LDKMNGGKTALLST-AQTTLDGKNYFKSELTTPESLDLLEMMAKALTNGMTHLVM 184 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF----------- 234 E SS R+ G+ G F N+ DHI H T + YF K +L Sbjct: 185 EVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANSE 244 Query: 235 --------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 EEL ++ P Y D+ +K + + G ++ G Sbjct: 245 MNHFAIIKEELKERKIPHAFYGADSENKIIESK----GLHFVTDG--------------- 285 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 SV G F L G F NAL A A+G + + L L VVPGR Sbjct: 286 -------SVSGA---FDIRLLGRFNQENALATALATKALGASLENIHDGL-ALAVVPGRM 334 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E + T G IY+DYAH SLE +++ + +G++++V G G++ + +R G++ Sbjct: 335 ELL-TAKNGAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVI 393 Query: 407 LD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVL 462 D+ + TDD+ R EDP+ I EI + ++ + +R AI+ A+ + + D + Sbjct: 394 EKHPRLDVILTTDDSNR-EDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAV 452 Query: 463 VVAGKGHETVHI 474 ++AGKG + + Sbjct: 453 IIAGKGTDMFQL 464 >gi|99034316|ref|ZP_01314355.1| hypothetical protein Wendoof_01000846 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 264 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 7/152 (4%) Query: 83 SATIRSNTPILVV---DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138 SAT +NTP V N ++ SR Y K P+ + AVTGT+GK+SV F +QI Q Sbjct: 112 SATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 171 Query: 139 RSGLSSFQIGPTST-ISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 SG ++ IG T I++ +DN LTTP L L ++S+ V +++EASSHG+D Sbjct: 172 NSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHGID 231 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 Q+R+ G++ A +FTN +DH+DYH++ YF Sbjct: 232 QYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYF 263 >gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus oris PB013-T2-3] gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus oris PB013-T2-3] Length = 516 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 146/509 (28%), Positives = 224/509 (44%), Gaps = 75/509 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSATIRS 88 V+ DSR + AG +F GN F+P+ A QGA A V YS Sbjct: 32 VAYDSRKVTAGTLFFC-KGN------FLPKYLTMAKGQGAVAYVAEQEYSEG-------G 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P ++V + +K ++L + YG P++ I+A+TGT GK++ A + R+ + Sbjct: 78 DLPAIIVKDEQKAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHVLGRA--TDH 134 Query: 146 QIGPTSTISSF---AQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + ST+ D+R LTTP + L + G+TH+ +E SS +HR Sbjct: 135 HVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYKKHR 194 Query: 199 LDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 G+ G F N+ DHI + H T Y + K E+LL +I A+ A +V Sbjct: 195 TYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSRVCLINAETADLADV 250 Query: 257 MKRAHNA------------GCRV-LSVGYQGKFIHLKKVCAIHNKQ----QVTISVE--G 297 A G +V L G F + + +H + T E G Sbjct: 251 YYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEFELAACTPKAERLG 310 Query: 298 KDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + +PG++ NA+ A L A D+A L+H+ + GR E T Sbjct: 311 LQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLDHVH----IKGRMEMQKTRQH 366 Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLADI 412 G IY+DYAH SL+ +L + R +G++ VV G GD+ +R GK ++ + D Sbjct: 367 G-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQ 425 Query: 413 AIVTDDNPRSEDPEKIRAEI----IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGK 467 I+T D+P EDP KI EI H G I+ +R AI+ AI+ D++V+AGK Sbjct: 426 IILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMDRPTAIKAAIDSSGNGDIVVLAGK 485 Query: 468 GHETVHIVTNGEKKMSVD----CDIIREI 492 G + + + + D D I EI Sbjct: 486 GEDPYQKINGVDTPYATDSKIAADYIHEI 514 >gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 170 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 11/155 (7%) Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 L+ L KL GR + +G + + VDYAHT ++LE +L+ +R GR++ +FGCGG Sbjct: 1 LKALPKLEGPVGRMQRLGGADKP-LVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGG 59 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RI 446 DRD+GKRP+M + LAD VTDDNPRSE P I +I PGF+ R Sbjct: 60 DRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKVRFIEGRG 116 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 +AI I + DV+V+AGKGHE + NG+++ Sbjct: 117 QAIAELIASASADDVVVLAGKGHEDYQEI-NGQRQ 150 >gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactococcus lactis subsp. lactis KF147] gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Lactococcus lactis subsp. lactis KF147] Length = 483 Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 129/492 (26%), Positives = 215/492 (43%), Gaps = 91/492 (18%) Query: 21 FPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + W +E +++S DSR +F A G F + + A VS Sbjct: 26 YYFNWLKEVNFDQLSYDSRKSTENTLFFA------KGLNFKKEYLTDLEAAFYVSEF--- 76 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQI 136 D+ + P ++V + ++ ++L A+ Y P+N LA+TGT GK++ A F + I Sbjct: 77 -DYEVAL----PAIIVTDVKRAMALIAASFY-DFPQNKLKTLALTGTKGKTTSAYFAKAI 130 Query: 137 CQRSGLSSFQIGPTSTISSFAQ---------DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 L G T+ +S+ AQ + LTTP + L + ++ + G+TH+ + Sbjct: 131 -----LDKMNGGKTALLST-AQTTLDGKNYFKSELTTPESLDLLEMMAKALTTGMTHLVM 184 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLF----------- 234 E SS R+ G+ G F N+ DHI H T + YF K +L Sbjct: 185 EVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSRYFVANSE 244 Query: 235 --------EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 EEL ++ P Y D+ +K + + G ++ G Sbjct: 245 MNHFAIIKEELKERKIPHAFYGADSENKIIESK----GLHFVTDG--------------- 285 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 SV G F L G F NAL A A+G + + L L VVPGR Sbjct: 286 -------SVSGA---FDIRLLGRFNQENALATALATKALGASLENIHDGL-ALAVVPGRM 334 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 E + T G IY+DYAH SLE +++ + +G++++V G G++ + +R G++ Sbjct: 335 ELL-TAKNGAHIYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVI 393 Query: 407 LD--LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAI-EMLNKQDVL 462 D+ + TDD+ R EDP+ I EI + ++ + +R AI+ A+ + + D + Sbjct: 394 EKHPRLDVILTTDDSNR-EDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAV 452 Query: 463 VVAGKGHETVHI 474 ++AGKG + + Sbjct: 453 IIAGKGTDMFQL 464 >gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus ultunensis DSM 16047] gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus ultunensis DSM 16047] Length = 523 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 127/495 (25%), Positives = 209/495 (42%), Gaps = 79/495 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K+ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMEYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 ++R+ G+ G F N+ DHI + H Y + K+ +L+ II A+ A Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETA 248 Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288 + E+ A R S K K CA Sbjct: 249 HFNEIYAAATTTTNPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKA 308 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +++ I+ D+ + G+F N A++ AGL G++ + + + +PGR Sbjct: 309 RKLDING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404 + T S G + VDYAH S+ ++ ++ +IIVV G GD+ +RP + Sbjct: 360 MQTERTKSHG-MVVVDYAHNKASMMALMSFMQNEFNDPKIIVVVGAPGDKGISRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P EDP+ I EI GI + +R +AI AI M +D Sbjct: 419 SLTAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKD 478 Query: 461 VLVVAGKGHETVHIV 475 V+++ GKG + V Sbjct: 479 VVLICGKGADAFQKV 493 >gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group] Length = 889 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 99/441 (22%), Positives = 202/441 (45%), Gaps = 40/441 (9%) Query: 13 ELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 EL+++ + P+ ++ + V D+ + AG ++V + E+G + +A +GA Sbjct: 229 ELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV---GEEGLAGLTEADKRGAV 285 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127 A+V D T+ +++VD+ L + + LY + ++ ++ V GT G + Sbjct: 286 AVVADQTV---DIEGTLACRA-LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTDGVT 341 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRL-----TTPSPIYLAKALSYLSSQG 181 + A V+ + + G+ + +G + ++A +N+L + PI + + ++ + G Sbjct: 342 TTAHLVRAMYEAMGVRTGMVG---VLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398 Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-P 239 +E ++ G+ +D I TN+ + T + Y N+ LF ++ P Sbjct: 399 AEAALLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEG 297 + ++ DD S V++ ++ K +H K + +V + Sbjct: 459 ERHRKVVNIDDP-SAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPH 517 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + L G +YN L + + +A+G +++ +E++ +PGR E + G Sbjct: 518 GILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELIDEEQAFG- 576 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGK 404 + VD+A T SL +L ++ + RI+ VV GC G+R++GKRP+M K Sbjct: 577 VIVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTK 636 Query: 405 IALDLADIAIVTDDNPRSEDP 425 +A + +D+ ++T DNP +EDP Sbjct: 637 VAAEKSDVVMLTSDNPANEDP 657 >gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1112] gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus 30SC] gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1112] gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus 30SC] gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus amylovorus GRL 1118] Length = 523 Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 126/490 (25%), Positives = 209/490 (42%), Gaps = 79/490 (16%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K++ VS DSR IQ +F G F P ++ GA V Y Sbjct: 30 KMDYVSYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGAICYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 ---KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQAN 135 Query: 142 ------LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 136 GGKTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQA 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 ++R+ G+ G F N+ DHI + H Y + K+ +L+ II A+ A Sbjct: 193 YKKNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETA 248 Query: 252 YSKEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNK 288 + E+ A R S K K CA Sbjct: 249 HFDEIYAAATTTTNPDSIYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKA 308 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +++ I+ D+ + G+F N A++ AGL G++ + + + +PGR Sbjct: 309 KKLPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRDV-TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK 404 + T S G + VDYAH S+ ++ ++ + +IIVV G GD+ +RP + Sbjct: 360 MQTERTKSHG-MVVVDYAHNKASMMALMSFMQNEFDNPKIIVVVGAPGDKGVSRRPGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P EDP+ I EI GI + +R +AI AI M D Sbjct: 419 SLTAYADKAFLTTDDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDD 478 Query: 461 VLVVAGKGHE 470 V+++ GKG + Sbjct: 479 VVLICGKGAD 488 >gi|225377873|ref|ZP_03755094.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM 16841] gi|225210311|gb|EEG92665.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM 16841] Length = 195 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 10/141 (7%) Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +VPGR + + T G +DYAH SL +L+ +R R+IV+FGCGG+R +R Sbjct: 26 QIVPGRCQNM-TAGTGYVFLIDYAHNEMSLRNLLETLRKFKPARLIVIFGCGGNRSVLRR 84 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------PGFIEKGNRIEAIR 450 MG+ A LAD I+T DNPR EDPE+I +I G+ P +I+ +R A+ Sbjct: 85 YQMGETAGRLADFTIITSDNPRWEDPERIMNQIEDGLRGAVCAGEKPSYIKISDRRAAVE 144 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 A+ M K+D++V+AGKGHE+ Sbjct: 145 YAVSMAEKRDIIVLAGKGHES 165 >gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 516 Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 133/513 (25%), Positives = 218/513 (42%), Gaps = 75/513 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + ++ VS DSR +Q +F K G ++ A GA A V Y Sbjct: 28 QTRMEAVSYDSRDVQNNSLFFC----KGAGFRPTYLTMAKENGAIAYVAEQPYPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 + L+V N K ++L ++ Y + P++ ++ TGT GK++ A F++ + Sbjct: 80 ---TGMHALIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGM----- 130 Query: 142 LSSFQIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 L G T+ +SS + LTTP + L + + G+TH+ +E SS Sbjct: 131 LDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSS 190 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 ++R+ G+ G F N+ DHI + H + Y + K+ +LL II A+ Sbjct: 191 QAYKKNRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL----QLLVNSRKCIINAE 246 Query: 250 -----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303 D Y+ ++ G++ LKK K T E K F Sbjct: 247 TDRFADVYAAATTTTNPDSIYLFARDGFENP--DLKKPIDFRYKSVETDLAETK-FTLTT 303 Query: 304 -------FPLPGEFQV-----YNALVAAGLCIAIGI------DSALVLEHLEKLHVVPGR 345 P+ GE+ + +N A G I G+ D A + H+ +PGR Sbjct: 304 ASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIRHV----TIPGR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 E V T + G I VDYAH S+ +++ +R T+ RIIVV G GD+ +R + Sbjct: 360 METV-TTQKHGLIVVDYAHNKASMLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSE 418 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460 AD A +T D+P E+ + I EI GI + + +R +AI+ AI D Sbjct: 419 SLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPND 478 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 V+++ GKG + + + + D I R+++ Sbjct: 479 VVLLCGKGADAFQKIRGVDTPYAGDIVIARQVV 511 >gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759] gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759] Length = 507 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 116/491 (23%), Positives = 205/491 (41%), Gaps = 54/491 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ +S+ + G FV + ++ +L AI+QGA + Y D P Sbjct: 35 ITINSKDVVPGTFFVCKGASFKEEYL--KSAISQGAIVYLSQQKYDGVDI--------PY 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAV----------TGTSGKSSVASFVQQICQRSGL 142 ++V + RK ++L A +G +N+ V K + + C + Sbjct: 85 IIVSDIRKAMALAARWFFGNPGDNLTKVGITGTKGKTTVTFVMKDILDKYTDNRC--AAF 142 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S+ +I + + + LTTP PI L ++G TH +E SS + +R+ G Sbjct: 143 STHEID----VGTKVFETTLTTPEPIELQTYFDMAVNEGCTHCIMEVSSQAMKMNRIYGE 198 Query: 203 KLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-------- 252 G FTN+ DHI H + + Y K+ ++ ++Y+D Y Sbjct: 199 HYKVGVFTNIDYDHISPTEHASMEDYLGCKVSFLKQC----DNVVLYSDTRYFETIYNEV 254 Query: 253 -SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFP 305 K V+ L F + +IHN+ + G++ + Sbjct: 255 RDKHVVVYGSKESVEKLMSRDDDFFEKDTEFASIHNEDLTDHNSYFELIYGGENRAYNTN 314 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 L G++ V N + A + IGI + + + ++V PGR + R +DYAH Sbjct: 315 LIGDYNVENIVAAIISSLLIGIPNEQIRSSIRDIYV-PGRLQVYHWKDRT--FMIDYAHN 371 Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 S+ + + ++ T+ I VVFGCGG+R + +R MG++A AD ++T ++P E Sbjct: 372 YISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDMGRLAEQYADKVVLTMEDPGFES 431 Query: 425 PEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482 E I EI I P +I +R EA+ A++ ++++ GKG E+ + + Sbjct: 432 CEDICKEIKQYITKPCYI-IVDREEALTRALDEAQPGELVITTGKGIESTQRINGTFVQC 490 Query: 483 SVDCDIIREIL 493 D +I L Sbjct: 491 HSDAQVIEHWL 501 >gi|60117246|gb|AAX14404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila mojavensis] Length = 143 Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 85/137 (62%) Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V H+ +E+SSHG+DQ+R+ G+KL A +FTN +DH+DYH++ Y K RLF E+LP+ Sbjct: 6 VEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEG 65 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 AI+ AD ++K A +V++ G +G I L + + N Q +T+ ++ + ++ Sbjct: 66 KTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVKIDNQIYN 125 Query: 302 FLFPLPGEFQVYNALVA 318 FP+ G+FQ YN L A Sbjct: 126 TFFPVLGKFQAYNLLCA 142 >gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Leuconostoc argentinum KCTC 3773] Length = 495 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 113/422 (26%), Positives = 192/422 (45%), Gaps = 25/422 (5%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQR-----SGL 142 P V + +K LS+ + + +P+N L A TGT GK++ A QI Q + L Sbjct: 75 PQWQVTDVQKALSVLSMAFF-DYPQNDLWIGAFTGTKGKTTAAYMAFQILQHMTNQHTAL 133 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S T + + + LTTP L K + G+TH+ +E SS + R+ G+ Sbjct: 134 FSTVDRITGNQPADKKKSDLTTPESYELFKDMRRAVDNGMTHLVMEVSSQAYLKQRVYGL 193 Query: 203 KLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KR 259 + G+F N+ DHI + H + + Y KM L + E + A D S + + Sbjct: 194 EFQVGAFLNISPDHIGPNEHPSFEDYLAHKMMLLDH---AEQVIVNAASDQLSAVLAHAK 250 Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNAL 316 H+ S Q G++ + AIH + + + + + LPG+F NAL Sbjct: 251 THHDHVYTYSQTDQGGEYTYQSLESAIHESRFTVAESDLAEMNGTYRLNLPGDFNESNAL 310 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + G A ++ L+ + +PGR + G +VDYAH S+ +L+ Sbjct: 311 AALIMTALAGAQHADMVAGLDTV-FIPGRMLSLPIPDH-GVAFVDYAHNYASMRALLQFA 368 Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 ++ G++ VV G G++ +R G++ + AD +T D+P+ E P I EI Sbjct: 369 QSQYPDGKVSVVIGAPGNKGVSRRADFGRVVSEFADTVFLTADDPQFESPMAIAKEIAAH 428 Query: 436 I--PGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 I P + +RI+AI+ AI N D+++VAGKG + + ++ D +++ Sbjct: 429 ITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIVAGKGEDPYQKINGVDEPYIGDYAVVQN 488 Query: 492 IL 493 +L Sbjct: 489 VL 490 >gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus brevis ATCC 367] gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC 367] Length = 504 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 131/497 (26%), Positives = 201/497 (40%), Gaps = 66/497 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +QA +FV N +L AI GA A + Y + + P+ Sbjct: 31 LTYDSRQVQANTLFVCKGFNFSVDYLH--SAIENGATAYLAEEDYGV---------SVPV 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA------------SFVQQICQRS 140 ++V N RK LSL A++LY P+N L V G +G +F QQ+ S Sbjct: 80 ILVKNVRKALSL-AAQLYFDFPQNDLFVIGYTGTKGKTTSTYLTTNILSHAFPQQVAMFS 138 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 ++ +GP A LTT L K + G + +E +S R+ Sbjct: 139 TINHI-VGPKPQDQYRAH---LTTAESFDLFKEMRQAVDNGQKVLVMEVASQAYLLDRVY 194 Query: 201 GIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ G F N+ DHI + H Y KM +LL II A+ + E+ Sbjct: 195 GLTFDVGIFLNISPDHIGVNEHPNFANYLFCKM----QLLLNSRNCIINAETDHFDEIYA 250 Query: 259 RAH-------------NAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 A N LS+ Q +H+++ ++ + Sbjct: 251 AAKVSTDPEHIFTYGFNQAQASLSITSRQATLTDSHFDLTVHDERLAALATT-----YDV 305 Query: 305 PLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 +PG+F N A++A+ L A D L H +PGR E + T G +Y+D Sbjct: 306 SVPGDFNQSNSAAAILASHLAGAQVADMQYGLAHTR----IPGRMESI-TTKHHGTVYID 360 Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 YAH S+ +L + T R+I V G GD+ + +R K D AD A +T D+P Sbjct: 361 YAHDWGSMNALLSFLHTQFPDHRVIAVLGSTGDKGEDRREGFAKALNDYADAAYLTTDDP 420 Query: 421 RSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476 EDP I EI I K R AI AI D++V+AGKG + + Sbjct: 421 GHEDPMAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTDLVVLAGKGEDAYQKIN 480 Query: 477 NGEKKMSVDCDIIREIL 493 + + D + ++++ Sbjct: 481 GVDTPYASDPVVAQDVI 497 >gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus NCFM] gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase [Lactobacillus acidophilus NCFM] Length = 523 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 125/488 (25%), Positives = 207/488 (42%), Gaps = 75/488 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 K++ VS DSR IQ +F K G ++ A + GA V Y Sbjct: 30 KMDYVSYDSRDIQTNTLFFC----KGAGFRPTYLSMAKSNGANCYVAEQPYPEG------ 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG-- 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 80 -KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGG 137 Query: 142 ----LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 138 RTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 194 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + H Y + K+ +L+ II A+ A Sbjct: 195 KNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANF 250 Query: 254 KEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 EV A R S K K CA ++ Sbjct: 251 NEVYAAATTTTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKK 310 Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+ D+ + G+F N A++ AGL G++ + + + +PGR + Sbjct: 311 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRNV-TIPGRMQ 361 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 T G + VDYAH S+ +++ ++ +IIVV G GD+ +RP + Sbjct: 362 TERTKEHG-MVVVDYAHNKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 420 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 AD A +T D+P EDP+ I EI GI + +R +AI AI DV+ Sbjct: 421 SAYADKAFLTTDDPGFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVV 480 Query: 463 VVAGKGHE 470 ++ GKG + Sbjct: 481 LICGKGAD 488 >gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus ATCC 4796] gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus acidophilus ATCC 4796] Length = 532 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 125/488 (25%), Positives = 207/488 (42%), Gaps = 75/488 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 K++ VS DSR IQ +F K G ++ A + GA V Y Sbjct: 39 KMDYVSYDSRDIQTNTLFFC----KGAGFRPTYLSMAKSNGANCYVAEQPYPEG------ 88 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG-- 141 L+V + K ++L ++ + + P++ ++A TGT GK++ A F++ + ++ Sbjct: 89 -KGMHALIVRDVSKAMALLSAAFF-RFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGG 146 Query: 142 ----LSSFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +SS +GP SF + LTTP + L + + G+TH+ +E SS Sbjct: 147 RTALISSVNDVVGPKPE-DSFK--SSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYK 203 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++R+ G+ G F N+ DHI + H Y + K+ +L+ II A+ A Sbjct: 204 KNRVFGLTYDLGFFLNISPDHIGPNEHPNFADYLHCKL----QLMVNSRKCIINAETANF 259 Query: 254 KEVMKRAHNA-----------------------GCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 EV A R S K K CA ++ Sbjct: 260 NEVYAAATTTTNPDSIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKK 319 Query: 291 VTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + I+ D+ + G+F N A++ AGL G++ + + + +PGR + Sbjct: 320 LPING-----DYTLKMLGDFNESNGTAAIIGAGLA---GLNHDQCAKGIRNV-TIPGRMQ 370 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 T G + VDYAH S+ +++ ++ +IIVV G GD+ +RP + Sbjct: 371 TERTKEHG-MVVVDYAHNKASMMALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESL 429 Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462 AD A +T D+P EDP+ I EI GI + +R +AI AI DV+ Sbjct: 430 SAYADKAFLTTDDPGFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVV 489 Query: 463 VVAGKGHE 470 ++ GKG + Sbjct: 490 LICGKGAD 497 >gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 27-2-CHN] gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 115-3-CHN] gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus jensenii JV-V16] gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 27-2-CHN] gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus jensenii 115-3-CHN] gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus jensenii 208-1] gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus jensenii JV-V16] Length = 516 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 125/483 (25%), Positives = 209/483 (43%), Gaps = 69/483 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA----QGAEAIVVSSAYSLQDFSA 84 K++ +S DSR IQ +F G F P ++ GA V + Sbjct: 30 KMDYISYDSRDIQTNTLFFC------KGAGFRPTYLSMAKDNGATCYVAEQPFPEG---- 79 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR-- 139 LVV + K ++L ++ Y + P++ ++A TGT GK++ A F++ I + Sbjct: 80 ---KGMHALVVRDVTKAMALLSAAFY-RFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMN 135 Query: 140 SGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G ++ + +D + LTTP + L + + G+TH+ +E SS + Sbjct: 136 GGKTALFSSVNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKK 195 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 +R+ G+ G F N+ DHI + H Y + K+ +LL II A+ + Sbjct: 196 NRVFGLTYDLGFFLNITPDHIGPNEHPNFADYLHCKL----QLLVNSRKCIINAETDHFP 251 Query: 255 EVMKRA-----------------HNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTI 293 EV A N +V L + I K + + + Sbjct: 252 EVYAAATTTTNPDSIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHL 311 Query: 294 SVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++EG ++ + G+F N A++ AGL A ++ + H+ + GR E Sbjct: 312 AIEG---EYTLDMIGDFNEINGTAAIIGAGLGGANHEHASEGIRHV----TISGRMETEK 364 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409 T + G + VDYAH S+ ++ ++ ++ +IIVV G GD+ +RP + Sbjct: 365 TKNHG-LVVVDYAHNKASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVF 423 Query: 410 ADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 AD A +T D+P EDP E+I A I H + +R +AIR AI M K DV+++ Sbjct: 424 ADKAFLTTDDPGFEDPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLIC 483 Query: 466 GKG 468 GKG Sbjct: 484 GKG 486 >gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus antri DSM 16041] gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus antri DSM 16041] Length = 516 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 139/512 (27%), Positives = 227/512 (44%), Gaps = 77/512 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ----AIAQGAEAIVVSSAYSLQDFSATIRS 88 V+ DSR + AG +F GN F+P+ A QGA A V Y Sbjct: 32 VAYDSRKVTAGTLFFC-KGN------FLPKYLTMAREQGAVAYVAEQEYPEG-------G 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P ++V + ++ ++L + YG P++ I+A+TGT GK++ A I R+ + Sbjct: 78 DLPAIIVKDEQEAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHILGRA--TDQ 134 Query: 146 QIGPTSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + ST+ F D LTTP + L + G+TH+ +E SS + Sbjct: 135 HVALFSTLDRVLGNRPADRFKSD--LTTPESLDLFHDMRAAVDNGMTHLVMEVSSQAYKK 192 Query: 197 HRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 HR G+ G F N+ DHI + H T Y + K E+LL +I A+ A+ Sbjct: 193 HRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCK----EQLLVNSGICLINAETAHLT 248 Query: 255 EVMKRA--------------HNAGCRV-----LSVGYQGKFIHLKK----VCAIHNKQQV 291 +V A H A ++ + Y+ L + + A K Q Sbjct: 249 DVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEFELAACSPKAQ- 307 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + ++G+ + +PG++ NA+ A G +A + L+ +H+ GR E T Sbjct: 308 QLGIQGR---YKTSVPGDYNEGNAVAAVISTALAGATAADAVATLDHVHI-KGRMEMQKT 363 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDL 409 G IY+DYAH SL+ +L + R +G++ VV G GD+ +R GK ++ + Sbjct: 364 RQHG-TIYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEH 422 Query: 410 ADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464 D I+T D+P EDP KI EI H G ++ +R AI+ AI+ + D++V+ Sbjct: 423 PDQIILTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMDRPTAIKAAIDSSSNGDIVVL 482 Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 AGKG + + + + D I + + I Sbjct: 483 AGKGEDPYQKINGVDTPYATDSKIAADYIDEI 514 >gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 350 Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 13/223 (5%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 SR ++ G ++VAI G + DGH FI +A+++GA +V SL D + + P + V Sbjct: 6 SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVD----VPPDVPYVRVT 61 Query: 97 NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + R+ S ++R+YG P L V G +G + + V + + ++G S++ F Sbjct: 62 SARRAASALSNRVYG-FPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSV--F 118 Query: 157 AQDNRLTTPSPIY------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + T P+ + L +AL + G TH +E SSHG+ QHR + FT Sbjct: 119 NETGLRTVPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFT 178 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 NL R+H+D+H + + Y AK RLF L ++ AI+ DD Y+ Sbjct: 179 NLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYA 221 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%) Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRI 446 G+RD+GKRP MG IA LAD ++T D+ SEDPE+I EI+ G +R Sbjct: 246 GERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCDVVLDRA 305 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 +AI A+ N +DV+++ G+GHE+ +V G + D D++RE Sbjct: 306 QAIERAVIEANDEDVILITGRGHESFQVV-GGLRLEQTDADMVRE 349 >gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 504 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 120/498 (24%), Positives = 221/498 (44%), Gaps = 40/498 (8%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P+ + + +S +S+ + G +F + + +L QA A GA A V Y L Sbjct: 21 PLLTSQASVQNLSYNSKAVSEGTLFFCKGAHFKPAYL--EQAQALGAIAYVSEQDYGLDL 78 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + ++ V++ R + + A Y + P +TG +G + + + Sbjct: 79 Y---------LIQVEDIRLAMPIIADFFY-QAPYQAFHLTGITGTKGKTTTTFYLTKILD 128 Query: 142 LSSFQIG--PTSTISSFAQ-------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 L +G PT+ +SS + ++ LTTP + L +++ + +++E SS Sbjct: 129 LYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRFNHVRESAIDFMTMEVSSQ 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 L HR+ + G+F N+ DHI H + YF +K++LF++ A+I D Sbjct: 189 ALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLKLFDQ----SQLAVINLDA 244 Query: 251 AYSKEVMKRAHNAGC--RVLSVGYQG-KFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPL 306 + + +RA ++ ++++V + K +L K + + ++Q + + + + Sbjct: 245 DHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQQHFVLHAPDFEGEIRMKM 304 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G F V NALVA + + ++ + L+ GR E + + VD+AH Sbjct: 305 LGRFNVENALVAIAIARYYQVPYEIIKKALQAAQT-EGRMEVYHSTDKRIHAIVDFAHNK 363 Query: 367 NSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 SLE + + R + IVVFG GD+ +R +G++A AD I+T D+P +E Sbjct: 364 LSLEKLFEASRQMYPKAHSIVVFGSAGDKAISRRKDLGEVAAQYADEIILTMDDPGTESV 423 Query: 426 EKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNG 478 EKI EI I + NR +AI A + + D V+++AGKG E + Sbjct: 424 EKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEVVVLIAGKGDEDTMKINGV 483 Query: 479 EKKMSVDCDIIREILGLI 496 ++ D +++ L I Sbjct: 484 DQAYPTDRYYVKQALEEI 501 >gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus italicus DSM 15952] gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Enterococcus italicus DSM 15952] Length = 514 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 123/525 (23%), Positives = 218/525 (41%), Gaps = 56/525 (10%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWR---------ERKINEVSSDSRHIQAGWIFVAIVGN 52 KL+D+ E + + I QW + + +S DSR +F Sbjct: 14 KLKDIYAVLLREKMLKEVIIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLF--FCKG 71 Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 ++ +F+ QA+ G + V Y D L+V + R+ +++ A Y Sbjct: 72 QQFKEVFLEQAVTGGVKVYVSEQPYDSIDAVG--------LIVTDIREAMAMIAQFFY-D 122 Query: 113 HPENILA---VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPS 166 HPEN L +TGT GK+S A F++ +++ + F T+ + LTTP Sbjct: 123 HPENKLTKIGITGTKGKTSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPE 182 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQ 224 + L K ++ G+TH+ +E SS R+ G+ G F N+ DHI H T Sbjct: 183 ALDLYKQMAKAVENGLTHLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFD 242 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 Y K +L + I+ AD Y + + + C + V Y L Sbjct: 243 DYLYCKRQLIQH----SKQMILNADSDYFELLAET-----CTLYHVPYVTFGRSLTVDVE 293 Query: 285 IHNKQQV--------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 I + T+S + + + G F NA A + +G + + + Sbjct: 294 IQDATDTRSFDLIAHTLSFSDLEGGYRLAILGTFNHDNATAALLVSHLLGFSEKISRQAI 353 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD 393 V+PGR + ++ I +D+AH S++ + + ++R +G++I++ G G Sbjct: 354 ANT-VIPGRMHVIDEPNQP-LILIDFAHNYLSIKAVGELGHHLRP--NGKVIILTGSTGG 409 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449 + +R + K ++AD AI+T D+P EDP I EII I + R +AI Sbjct: 410 KALSRRADIAKALSEIADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAI 469 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 A+ +D++ + GKG E + + D ++++++L Sbjct: 470 AIALSHATTEDIVAICGKGTEKEMKINGLGEPYPGDYEVVQQLLN 514 >gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC20] gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC20] Length = 506 Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 125/503 (24%), Positives = 213/503 (42%), Gaps = 73/503 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F + ++ +L Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---A 119 AI QG + + + Y +F+ T ++V + R+ +++ A YG HP+ L Sbjct: 74 AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYG-HPQEQLVTIG 124 Query: 120 VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +TGT GK+S A F + I S ++ F S + LTTP + L K ++ Sbjct: 125 ITGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAE 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ GI G+F N+ DHI Sbjct: 185 AVANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------ 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVT--- 292 P E P Y D Y K + R + + + Q H L++ C +H +T Sbjct: 227 --PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVHQVPYITYGR 278 Query: 293 -----ISVEGKDF--------DFLFPLPGEFQV-------YNALVAAGLCIAIGIDSALV 332 + EG D + + GE+Q+ + AA L + S Sbjct: 279 SDADYVVQEGTDLKGFALSAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGASRED 338 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG 391 + + ++PGR V G + VDYAH S + + + R + GR++ V G Sbjct: 339 AQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSA 397 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447 G + Q +R MG+ + AD +T D+P E+ + I EI I I + +R + Sbjct: 398 GGKAQSRRADMGRALGEYADKVYLTSDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQ 457 Query: 448 AIRTAIEMLNKQDVLVVAGKGHE 470 A+++AI + +D++++AGKG E Sbjct: 458 AVKSAIAEADSKDIVIIAGKGAE 480 >gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC30] gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC10] gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC30] gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus EC10] Length = 506 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 125/506 (24%), Positives = 214/506 (42%), Gaps = 79/506 (15%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F + ++ +L Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL---A 119 AI QG + + + Y +F+ T ++V + R+ +++ A YG HP+ L Sbjct: 74 AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYG-HPQEQLVTIG 124 Query: 120 VTGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +TGT GK+S A F + I S ++ F S + LTTP + L K ++ Sbjct: 125 ITGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAE 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G+TH+ +E SS R+ GI G+F N+ DHI Sbjct: 185 AVANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------ 226 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISV 295 P E P Y D Y K + R + + + Q H L++ C +H Q I+ Sbjct: 227 --PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVH--QVPYITY 276 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---------------------- 333 D D++ + + + AL AA + + + L + Sbjct: 277 GRSDADYVVQEGADLKGF-ALSAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGAS 335 Query: 334 -EHLEKLH---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 E +K+ ++PGR V G + VDYAH S + + + R + GR++ V Sbjct: 336 REDAQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPEGRLLFVT 394 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGN 444 G G + Q +R MG+ + AD +T D+P E+ I EI I I + + Sbjct: 395 GSAGGKAQSRRADMGRALGEYADKVYLTSDDPDFEEASAIAKEIAAAITNPEVAIIHEMD 454 Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHE 470 R +A+++AI + +D++++AGKG E Sbjct: 455 RAQAVKSAIADADSKDIVIIAGKGAE 480 >gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM 16841] Length = 337 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 138/319 (43%), Gaps = 36/319 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +RKI ++ S ++ G +FV I G + +GH ++PQA+ GA +VV Y ++ S + Sbjct: 21 DRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEHGAAVLVVDDRYVIESRSGPV 80 Query: 87 ---------------RSNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSS 128 N ++ V +TRK LS ++ + HP ++ +TGT+GK++ Sbjct: 81 ILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFF-DHPAERMKMIGITGTNGKTT 139 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTH 184 A I Q +G +++G TI S+ R TTP + + LS + Sbjct: 140 TAFLTAGILQEAG---YRVGMIGTIESYDGRRRETVKNTTPESCEIHRLLSRMVENECDC 196 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKES 242 +E SS G+ R I G F N+ DHI H T Y K RL + Sbjct: 197 CVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIGKGEHATFSEYLYCKSRLMRQC----G 252 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTISVEGKD 299 I+ DD +++ H S+ + + + + + + T+ E + Sbjct: 253 IGIVNQDDPNVDKILA-GHTCEVENFSIRHPSDVMAEDEWYGMESGSLQSHFTVKREWRR 311 Query: 300 FDFLFPLPGEFQVYNALVA 318 D + LPG+F +YNAL A Sbjct: 312 EDIVMQLPGQFNIYNALAA 330 >gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 511 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 102/408 (25%), Positives = 179/408 (43%), Gaps = 44/408 (10%) Query: 11 FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 +++N L I + +E +I ++ + + G IFVAI G DGH FI +A G Sbjct: 3 LEKILNNLDIIDANFEIDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFIKKARELG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125 AE VV +D+S N + V+N+R L+ A Y + N++ +T T+G Sbjct: 63 AEIAVV------EDYS---EENIKQIRVENSRIALADMARNFYEDPSKDMNVIGITATNG 113 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ A V I + ++ IG T + + LTTP + L + +GVT Sbjct: 114 KTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSVLTTPESLTLQSYFRDMKDKGVTD 173 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V++E SS + +R I +F NLGR+HID H + + YF K RL +++ A Sbjct: 174 VTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHGSFENYFRFKSRLIRH-AKEDALA 232 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------------GKF-IHLKKVCAIH 286 I+ ADD +++ +VLS + GKF + + I Sbjct: 233 ILNADD---EKIYSLRDKTKAQVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINRDIKIK 289 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + +E +F+ G V N+LVA + + + ID+ + L+ V RF Sbjct: 290 D-----FILEKSEFNIELGSVGYSSVMNSLVAIIIGLCLKIDTETIKRALKNFKGVERRF 344 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 E + +I D+ +++ ++ ++ + + +++ G R Sbjct: 345 ELIFDEE--FKILDDHFANEKNIDATMETLKEMDYKNLNILYAIRGKR 390 >gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus vaginalis ATCC 49540] Length = 460 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/376 (27%), Positives = 178/376 (47%), Gaps = 42/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ +I V+ DSR + +G +F+ + G +DGH ++ A A GA A + +S D Sbjct: 20 QWKDVEITSVAFDSRQLDSGALFIPLQG-AQDGHQYVESAFANGAVATLWAS-----DHD 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T + PILVVD+ + L + K ++AVTG++GK++ I Sbjct: 74 VTTTEDQPILVVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTKDMTASIL------ 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q+ T T ++F +N + P ++ L+ + T V V G+D+ +LD + Sbjct: 128 STQLNVTKTHANF--NNEIGVP--------VTLLNMESSTEVVV--VEMGMDRPGQLDFL 175 Query: 203 -KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL++ F T +G HI++ T+ +AKM + L KE I+ D + + Sbjct: 176 SKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGL--KEDGTFIFNGD--EPLLQE 231 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNA 315 RA N R ++ G Q + N+ + +I E D +F P+ GE+ V NA Sbjct: 232 RAANVEQRKVTFGRQ---LTDDFYATSVNQHETSIDFKVNEWPDEEFTIPMVGEYNVNNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L A + + I A + + L+ + + R E+V ++G RI D Y + + +LK Sbjct: 289 LAAIAVGKQLHITPAHIKKALKNVELTENRAEWVN-GAQGERILSDVYNSNPTAAKQVLK 347 Query: 375 NIRTI-TSGRIIVVFG 389 I + T+G+ I V G Sbjct: 348 TIEELPTTGKRIAVLG 363 >gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pullorum MIT 98-5489] gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Helicobacter pullorum MIT 98-5489] Length = 230 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 23/249 (9%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SSH + Q+R++G++ TN+ DH+DYH+T + Y K F PK+ +I Sbjct: 1 MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATKNSFFA--TPKDEK-LI 57 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFP 305 D+ ++ ++ G + H+K A K +T + GK+ L Sbjct: 58 NKDEKNAQYSLQNTMTYGIESNAT------FHIK---AYSLKGGITAQIAYGKEEAMLNA 108 Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ +YNAL A G + I S L + + LE V GR + V I VD+ Sbjct: 109 YLFGKHNLYNALAAIG-AVKILTKSPLQMIADKLENFGGVLGRMQVVNEKPL---IIVDF 164 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 AHT + +E + ++ +I+V+FG GGDRD+ KRP MG A A +T DNPRS Sbjct: 165 AHTQDGMEQVF---QSFLHQKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRS 221 Query: 423 EDPEKIRAE 431 E+P+ I E Sbjct: 222 ENPKMIMQE 230 >gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM 20469] gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM 20469] Length = 517 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 123/470 (26%), Positives = 203/470 (43%), Gaps = 40/470 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATI 86 ++ +V+SDSR + G +FV G F P + +A V+ SL + + Sbjct: 30 QLTDVASDSREVIPGSLFVC------KGASFSPAYLTSAVKAGAVAYLCQRSLAEELQAV 83 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLS 143 N + VD+ R ++ A+ + G HP+ L +TGT GKS+ + ++ I Sbjct: 84 APNVAAIHVDDVRFAMAYVAAGVAG-HPDKKLTTIGITGTKGKSTCSYMLRAILDGDEPY 142 Query: 144 SFQIGPTSTISSF----AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 S + G I F Q TTP L + L + + G+ +V +E SS GL R Sbjct: 143 S-KCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHLKHAAEAGLPYVDMEISSQGLKYDRT 201 Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + L F N+G DHI H T + YF +K+++F+ A++ + +VM Sbjct: 202 VDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLKIFD----LARVAVVNKNTMMFDQVM 257 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNA 315 +RA +VL+ + ++ VT +V + P+ G F V NA Sbjct: 258 ERAQRCE-KVLTFSTTDSDATVWADEITPHQGMVTFTVHTPTWTSSAALPMSGLFNVENA 316 Query: 316 LVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 L A + +GI D+ L L +++ VPGR E + + VDYAH S + + Sbjct: 317 LAAITVADYLGIREKDAVLPLMNVK----VPGRMELLSSPDNKVTGLVDYAHNKLSYQKL 372 Query: 373 LKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 + G VV G G + +R + + A AD+ I T ++ EDP I A+ Sbjct: 373 FSSTAKEFPGYGRYVVMGAVGGKAYNRRQELPEEAAKWADLMIYTTEDCNMEDPAVICAQ 432 Query: 432 IIHGIP-GFIEK--GNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIV 475 + P G K +R +AI A+ + ++ + KG E +I+ Sbjct: 433 MAEATPEGAAHKIILDRYDAIYEAVSAAYDDPRPSLVYLLAKGDEPFNII 482 >gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270] Length = 516 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 122/500 (24%), Positives = 213/500 (42%), Gaps = 77/500 (15%) Query: 14 LINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 L+ L I ++ E++I ++ +S+++ IFVAI G K DGH++I A QG A Sbjct: 11 LLEDLEILEIKGNLDIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAKKQGCYA 70 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128 +V +DF + + + V N+R LS + YGK E+ I+ +T T+GK++ Sbjct: 71 CIV------EDF---VDLDVAQIKVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGKTT 121 Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + +++I + +G IG I F + LTTP + L K LS + V + Sbjct: 122 TSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSIFRERKADKVIM 181 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SS L+ R + SF+NL ++H++ H + +AY K +L E + A++ Sbjct: 182 EVSSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITE-AKEHQIAVLN 240 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306 D+ KE+ A +V S + + + + +S FDF+ Sbjct: 241 FDNPEIKEL---ASKTKAKVFSFSLDDSLENF-------SMKNLDLSTGRGKFDFIINRD 290 Query: 307 ---------PGEFQ----------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 GEF V N++VA + + GID + L V RFE Sbjct: 291 IETKSGILKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFE 350 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR------DQGKRPI 401 + + +I D+ ++++ L+ + + I ++ G+R + + I Sbjct: 351 IIF--EKDFKIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKII 408 Query: 402 MGKIALDLADI------AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--------- 446 L L++I VT + S++ I +I+ K N I Sbjct: 409 EWNNKLKLSEIYATLSRDTVTWKDEVSDEERDIFLKIM--------KENNIKVHLFDTLK 460 Query: 447 EAIRTAIEMLNKQDVLVVAG 466 EA+ T I++ K DV++ AG Sbjct: 461 EAVETVIDIAQKDDVVMFAG 480 >gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners SPIN 2503V10-D] gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 3008A-a] gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2062A-h1] gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 143-D] gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 60-B] gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners SPIN 2503V10-D] gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2062A-h1] gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 3008A-a] gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 143-D] gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners UPII 60-B] Length = 519 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 84 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDV 482 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514 >gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC 49626] gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC 49626] Length = 519 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 124/500 (24%), Positives = 209/500 (41%), Gaps = 68/500 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------SSAYSLQDFSATI 86 + DSR I+ G +FV G F P+ + EA V S A L+ + T+ Sbjct: 35 IDHDSRIIEPGHVFVC------KGAAFKPEFLKSALEAGAVAYLCAESHAAELEAIAPTV 88 Query: 87 RSNTPILVV--DNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQIC---- 137 P L+ +N R+ ++ ++ + G HP++ ++ +TGT GKS+ A ++ I Sbjct: 89 ----PALIATDENLRRAMAESSAYVTG-HPDHGLTMIGITGTKGKSTTACMLRAILDGDE 143 Query: 138 ---QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + + S ++ I DN TTP L + L+ G+T++++E SS L Sbjct: 144 PYEKTAIMGSIEV--FDGIEHGKPDN--TTPEAPELWRHLANAQKCGLTYMAMEVSSQAL 199 Query: 195 DQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 R G+ L F N+GRDHI H T + YF +KM++F+ A+I + + Sbjct: 200 KYDRTYGLHLDIAVFLNIGRDHISPVEHSTFEDYFVSKMKIFD----MAKTAVINRNTEH 255 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--------- 303 ++VM A R + H+ A + K + ++ + Sbjct: 256 YEDVM-----AHVRAVHERNPECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTW 310 Query: 304 -----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 P+PG F V NAL A + +G + L H V GR E + T R Sbjct: 311 TGHLSIPMPGLFNVDNALAAITVANLLGFSGEKLQYPLLNTH-VSGRMELIPTKDRKVTA 369 Query: 359 YVDYAHTSNSLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 VDYAH + + + + GR +V+ GG + Q +R + + AD I T Sbjct: 370 LVDYAHNRLAYQKLFSSSSQEFPNYGRYVVLGAVGG-KAQERRRDLPEEGSKWADHLIYT 428 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEML---NKQDVLVVAGKGHE 470 ++P +DP +I AE+ P +R EAIR A+ + + ++ + KG E Sbjct: 429 TEDPAFDDPAEICAEMAAATPEDASYEIILDREEAIRQAVRLAYTDARPSIVYLLAKGDE 488 Query: 471 TVHIVTNGEKKMSVDCDIIR 490 + D + + Sbjct: 489 DFQSICGKRVPWKTDAAVFK 508 >gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners DSM 13335] gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners DSM 13335] Length = 505 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 19 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 69 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 70 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 123 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 124 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 184 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 243 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 244 AAATTTTNPDSIYLFARNDYDNPDLKRPID--FRFASVETDMCETKFKLYSETDAARN-- 299 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 300 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 349 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 350 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 408 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 409 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 468 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 469 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 500 >gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners ATCC 55195] gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Lactobacillus iners ATCC 55195] Length = 519 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 84 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514 >gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 11V1-d] gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 11V1-d] Length = 519 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 84 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 364 ETL-TTAHHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDV 482 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514 >gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii DSM 519] gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii] Length = 516 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 109/471 (23%), Positives = 205/471 (43%), Gaps = 47/471 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I ++ S ++ G +F I G K DGH ++ A +GA VV S +QD Sbjct: 23 DHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVES---IQD----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLS 143 + P +V + R L+L A Y HP ++ +T T+GK++ A + I + + Sbjct: 75 NIDIPQYLVSDARHSLALCACNFYN-HPSKFMKMIGITATNGKTTTAFMIDNILENN--- 130 Query: 144 SFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +F+ G T+ D + LTTP + L + + G+THV++E SS ++ R+ Sbjct: 131 NFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLTHVTMEVSSSAIELDRI 190 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI F N+ R+HID H+T + Y K L K S AI+ D + ++ + Sbjct: 191 AGIDYDIVIFNNISREHIDLHETFENYVALKSSLITN-AKKGSWAILNMDCEEAASLVNK 249 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----------GKDFDFLFPLPG 308 A V I K + + + T+ + + F+ +PG Sbjct: 250 TE-ANVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYLYMNQSFEISLSVPG 308 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 VYNA+ A + + ++ E V RFEF+ N +I D+ + + Sbjct: 309 YHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVERRFEFIYENDF--KIIDDHFANAGN 366 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR------DQGKRPIMGKIALDLADIA------IVT 416 +++ ++ + + ++ +V+ G R + + + L+L++I T Sbjct: 367 IDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLNLSEIIATKSADYTT 426 Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAIRTAIEMLNKQDVLVVAG 466 + + +++ E + +EII+ +E + +AI A+ + DV+++AG Sbjct: 427 EKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDVILLAG 477 >gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners AB-1] gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 09V1-c] gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 01V1-a] gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2052A-d] gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2053A-b] gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners SPIN 1401G] gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 09V1-c] gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 01V1-a] gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2053A-b] gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LEAF 2052A-d] gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus iners SPIN 1401G] Length = 519 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 84 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 364 ETL-TTANHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514 >gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 03V1-b] gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Lactobacillus iners LactinV 03V1-b] Length = 519 Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 130/512 (25%), Positives = 220/512 (42%), Gaps = 77/512 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR I+ +F K ++ A GA V Y Sbjct: 33 KMDYISYDSRDIKTNTLF--FCKGKGFRPTYLSYAKENGAICYVAEQPYPEG-------K 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V N K +SL ++ Y + P++ ++A TGT GK++ A F++ I L Sbjct: 84 GMHALIVSNVTKAMSLLSAAFY-RFPQDDLFLIAFTGTKGKTTSAYFLKGI-----LDKL 137 Query: 146 QIGPTSTISSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G T+ SS + LTTP + L + + G+TH+ +E SS Sbjct: 138 NGGRTALFSSVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYK 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRL---------------FEELL 238 ++R+ G+ G F N+ DHI + H + Y + K++L F+E+ Sbjct: 198 KNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIY 257 Query: 239 PKES----PAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289 + P IY A + Y +KR + R SV + KF + A N Sbjct: 258 AAATTTTNPDSIYLFARNDYDNPDLKRPIDF--RFASVETDMCETKFKLYSETDAARN-- 313 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 I VEG ++ + G+F NA ++ AGL G++ + ++ + +PGR Sbjct: 314 ---IPVEG---NYSLKMIGDFNEINATAAIIGAGLA---GVNYQDCYDGIKNV-TIPGRM 363 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 E + T + G + VDYAH S+ ++ + + S +IIVV G GD+ +R + Sbjct: 364 ETL-TTAHHGTVIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSES 422 Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461 A+ +T D+P ED + I EI GI + + +R +AI AI+ DV Sbjct: 423 LSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDV 482 Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 +++ GKG + + + D + +E++ Sbjct: 483 VLICGKGADPYQKIRGVDTPYPTDIKVAQEVI 514 >gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces urogenitalis DSM 15434] gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Actinomyces urogenitalis DSM 15434] Length = 522 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 136/501 (27%), Positives = 216/501 (43%), Gaps = 54/501 (10%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P W ++ V D+R I G + V KED ++ A QG A V YS Sbjct: 49 LPELW----LSSVVYDTRMITPGALLVVKGRFKED---YLLPAQEQGMVAYVAEREYS-- 99 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + P L+V + + +SL A+ LYG HPE L + G +G + + + Sbjct: 100 -----SLTTCPGLIVTDALEAMSLLAAELYG-HPERELTIVGITGTKGKTTTAHLV--HA 151 Query: 141 GLSSFQIGPTSTISS--FAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 LS G ++ SS D R LTTP + + G+TH+ +E SS Sbjct: 152 VLSQVTGGRSAMFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQ 211 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 R+ G+ G F N+G+DHI H T + YF K EL+ ++ AD Sbjct: 212 AYKLKRVFGLTFDVGVFLNIGQDHISLVEHPTFEDYFFCK----RELIRHSRQLVLNADT 267 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHL----KKVCAIHNKQQVTISVEGKDFDFLFPL 306 Y + + A AG R L+V + + L K ++ Q+V S D L Sbjct: 268 DYHGLLTEEARLAGARTLTVSREDGDLILTQEGKGFTLRYHGQEVAGSA---DQPMRLRL 324 Query: 307 PGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 G F NA A + +++G + + L LE++ V GR E + ++ G YVD+AH Sbjct: 325 AGAFNQDNAAAAVAVALSLGSPAGSPQLRALEQVQ-VSGRMERL-VSADGVVGYVDFAHN 382 Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 S +L + + + RII+V G G + +R + A D I T+D+ Sbjct: 383 HLSTSSLLDEVERVYGRENPRIILVSGSTGGKAVNRRQGIVTAANGRVDSFIFTEDDQDR 442 Query: 423 EDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAI----EMLNKQDVLVVAGKGHETVH 473 E+ +I A + G E +I +AI A+ E +++V++V GKG E + Sbjct: 443 ENATQI-ARQMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIGKGDEVYN 501 Query: 474 IVTNGEKKMSVDCDIIREILG 494 +V ++ D ++R +LG Sbjct: 502 VVNGVKQPYEGDAVVLRRLLG 522 >gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus casseliflavus ATCC 12755] gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Enterococcus casseliflavus ATCC 12755] Length = 506 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 122/515 (23%), Positives = 211/515 (40%), Gaps = 97/515 (18%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQ+ + K+ + + P + + +S DSR A +F + ++ +L Sbjct: 16 LQENLLKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFCKGASFKESYL--AA 73 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG + + + Y +F+ T ++V + R+ +++ A YG E + + + Sbjct: 74 AIDQGIQCYISETPYD--NFA------TYGIIVTDIRETMAVIAQAFYGNPQEQLVTIGI 125 Query: 121 TGTSGKSSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 TGT GK+S A F + I S ++ F S + LTTP + L K ++ Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + G+TH+ +E SS R+ GI G+F N+ DHI Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIG------------------- 226 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVE 296 P E P Y D Y K + R + + + Q H L++ C +H Q I+ Sbjct: 227 -PVEHPT--YDDYLYCKRELIR----NSKQMILNRQSDHYHLLRETCEVH--QVPYITYG 277 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL----------------------- 333 D D++ + + + AL AA + + + L + Sbjct: 278 RSDADYVVQEGMDLKSF-ALTAASDVLQVSGEYQLGILGSFNHENAAAAILAACLAGASR 336 Query: 334 EHLEKLH---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFG 389 E +K+ ++PGR V G + VDYAH S + + + R + GR++ V G Sbjct: 337 EDAQKVLPTVIIPGRM-IVLEKENGAVMIVDYAHNYLSFQSLSELARQLRPDGRLLFVTG 395 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNP--------------RSEDPEKIRAEIIHG 435 G + Q +R MG+ + AD +T D+P +PE IIH Sbjct: 396 SAGGKAQSRRADMGRALGEYADKVYLTSDDPDFEEAAAIAKEIADAITNPE---VAIIHE 452 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 + +R +A++ AI + +D++++AGKG E Sbjct: 453 M-------DRAQAVKLAIAEADGRDIVIIAGKGAE 480 >gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Carnobacterium sp. 17-4] Length = 535 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 173/379 (45%), Gaps = 45/379 (11%) Query: 1 MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MKL DL+ K NQL I + + I +++ S+ + A +FV I G++ DGH Sbjct: 1 MKLTDLLKSVKIDSSCHNQLKI---ELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHN 57 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--- 115 + A +QGA I+V +DF I + L V ++R+ L++ +S + HP Sbjct: 58 YAKHAASQGATVIIV------EDFIEDI--HVIQLKVSDSREALAILSSNFFD-HPSKSM 108 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174 NI VT T+GK+++ +++I + S L S IG I + +RLTTP L + Sbjct: 109 NIFGVTATNGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHF 168 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + + + +THVS+E SS L+ R+ +F N+ +HI H++ AYF+AK L Sbjct: 169 ARMRDREITHVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLI 228 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVT 292 K S AI+ D+ + K +V++ G + K I + + T Sbjct: 229 RN-ASKASTAILNLDEPLLIPLEKETE---AQVITFGIENKSGTITVSDIRFSSGIPSFT 284 Query: 293 I------------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + ++E FD + G +YNAL A + G+ + L +E +++ Sbjct: 285 VNIRKPFNTLSGKTIEITSFDLEMSVLGYHSIYNALTA----LVTGLVNDLPIEDIQR-- 338 Query: 341 VVPGRFEFVGTNSRGGRIY 359 G F G R +Y Sbjct: 339 ---GIKNFQGVERRFQVLY 354 >gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus tauri] gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus tauri] Length = 657 Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 116/535 (21%), Positives = 224/535 (41%), Gaps = 99/535 (18%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ +++D + +G +FV VG E G +A+A G AIV S + Sbjct: 82 EISGIANDINALLSGDLFVCPVGG-EAGASLAREAVAAGPVAIVASERVEGV-------A 133 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P VV N + L+ A YG + +A+TG GK++ + V+ + + + + Sbjct: 134 DVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGKTTTSYLVKSVFEAADIKMGL 193 Query: 147 IGPTSTIS--SFAQDN-RLTT------------------PSPIYLA-------------K 172 +G F +D+ +LTT +P +LA Sbjct: 194 VGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRDRTSTAPGWLAPYRGKYEFEELGAD 253 Query: 173 ALSY------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 AL + ++ G +E S+ + + G+ + T+ +Y+ Y Sbjct: 254 ALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGMNFDIVALTSFEGARKNYNGADSEY 313 Query: 227 FNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKK 281 + +F+ L E+ +I D+ + + R + +G V++ +G ++ + Sbjct: 314 SSFVADVFKVLENAETQRGVINIDEEDAD--LCREYASGVPVVTYSTQIGNTAADVYPAR 371 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 V + +++S + + + L GE + A + +A I ++ LE V Sbjct: 372 VDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCATAIGLAAEISLDVIAAGLEACEV 431 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKR 399 +PGR E V + + VD A+T +E +++++R R+I V GC GD ++G+R Sbjct: 432 IPGRMELVDM-GQDFSVLVDNANTPEGIERVIQSVRAANCRRVITVIGCEGDMGDERGER 490 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE------------ 447 ++GK+A D++D+ +T+D+P++EDP KI +I G I + ++I+ Sbjct: 491 AVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFRNEIYENDKIKDEALFPFLKDMY 550 Query: 448 ---------------------------AIRTAIEMLNKQDVLVVAGKGHETVHIV 475 AIR AI M + DV+++ G+G + +V Sbjct: 551 EVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAERDDVVLILGRGSKDYFVV 605 >gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Halothermothrix orenii H 168] Length = 480 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 103/407 (25%), Positives = 169/407 (41%), Gaps = 62/407 (15%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +++ DSR ++ G+ FVAI G K DGH FI +AI +GA I ++ ++ + RS P Sbjct: 14 DITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVI-----FTEKEIKS--RSGIP 66 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I+ V ++R L A+ Y +P ++ VTGT+GK++ + + G +S IG Sbjct: 67 IVRVKDSRSILGKLAAEFYN-YPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLIG 125 Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 LTTP P+ L K L + + + +E SSHG+ R+ G + Sbjct: 126 TVKVDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAIK 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+ DH D H Y K E+ P + ++ DD Y A N Sbjct: 186 VGTNITVDHFDLHSDFSDYVQVKKSFLEDKNP-HTLVLLNNDDHYLSSFGNIAKN----- 239 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPL------------------ 306 +GY I +T I+ G DF++ L Sbjct: 240 -QIGY-----------GITTNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVP 287 Query: 307 -----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PGE +YNALVA + + G+ + + + + RF+ + ++ I D Sbjct: 288 INLKIPGEHNIYNALVAITIGLYYGLTPEKIQDFFGQFRGIWRRFQVI--YNKDFAIIDD 345 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGK 404 AH S + K + + +++V G+R ++G +GK Sbjct: 346 CAHNPGSYGAVFKTVSQLKYKNLLIVNAIRGNRGAQINKGNAETIGK 392 >gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 458 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 49/374 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+ EVS+D+R ++ +FVA+ G K DGH F+P A+A+GA +VV +S+ Sbjct: 21 DREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAAGVVVERPFSI------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144 N +VV +T + L A LY + E ++ +TG++GK++ V+ + ++ Sbjct: 74 --NVTQIVVKDTFRALQELA--LYNRQKEGLKVIGITGSNGKTTTKDLVKAVLRQ----- 124 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIK 203 + +T +F +N L P L+ L+ T V VE GL + +D + Sbjct: 125 -KYNVCATEKNF--NNELGVP--------LTLLNFDENTEVGIVEMGMRGLGE--IDALC 171 Query: 204 LIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +A G TN+G H++ ++Q+ AK L + LP + AII + Y KE++ Sbjct: 172 QVARPDIGIITNIGEAHLELLKSQENIARAKSELIKN-LPGDGVAIINGESPYIKEIVA- 229 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 N + G++ +++KK + + I+ + +F PL G NAL A Sbjct: 230 --NIPVKKYFFGHRAGDLYIKKFSQEDDGLRF-ITAGILEEEFFLPLFGVHNAVNALAAI 286 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376 + +G+ L+ + L ++ + R E F+G+ +I DY + S S+E LK + Sbjct: 287 LTALTLGVRVPLIKKGLSEVELTGMRLEIQFIGSM----KIIKDYYNASPTSMEAALKVL 342 Query: 377 R-TITSGRIIVVFG 389 T GR I V G Sbjct: 343 AGTGQKGRKIAVLG 356 >gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Treponema succinifaciens DSM 2489] Length = 568 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 16/177 (9%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVD 361 +PG F YN A +A+ + + +E L +KL V GR + + + VD Sbjct: 367 VPGAFNAYNITAA---ILAVHGTTGISIEKLALCAQKLTSVKGRMTVI-DEGQPFEVIVD 422 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 YAHT +S E I ++ G++I VFG GG+RD KRP+ G+IA DI I+TD++PR Sbjct: 423 YAHTPSSFETIFPPLKNRAMGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPR 482 Query: 422 SEDPEKIRAEIIHGIPGFIEKGN--------RIEAIRTAIEMLNKQDVLVVAGKGHE 470 ED I +I G +K N R +AIR A M + D++++ GK HE Sbjct: 483 KEDRMTIIEQIALGARKEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLGKSHE 539 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 13/215 (6%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS------ATIRSN 89 DSR ++ ++F A+ G G+ FI QA++ GA A+V + ++ S A+ Sbjct: 43 DSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEITQEEHSQIKEALASSSKK 102 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + V ++R +S +S Y ++ VTGT GKSS SF+ Q+ + +G+ + I Sbjct: 103 VVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTEGKSSTVSFIWQLLRLNGIKAGFI 162 Query: 148 GPTS-TISSFAQDN--RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202 ++ A DN TTP + + L + G TH VE+SSHGL + +RL + Sbjct: 163 STVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNGCTHAVVESSSHGLSKKLNRLGNV 222 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 F N+ +H+++H T + Y + K LF L Sbjct: 223 LFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRAL 257 >gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM 17244] gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM 17244] Length = 408 Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 44/382 (11%) Query: 117 ILAVTGTSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167 ++ VTGT GKS+ + F++ I + +SS G STI ++ ++ LTTP Sbjct: 12 LIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSS---GIISTIDTYDGSELSESLLTTPES 68 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225 + K L+ + + + E SS R+ G G F N+G DHI H+ Sbjct: 69 LEFYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDVEHKDFDD 128 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 YF++K++L E S I+ D EV+ S+ + + K Sbjct: 129 YFSSKIKLLE-----NSEYIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADY----K 179 Query: 282 VCAIHNKQQVTI-----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 I K + T + E K+++ L + G + V NA+ A +C + ID + + + Sbjct: 180 AMNIKRKNRFTSFDLVHNGELKNYNLL--MSGLYNVENAIAAIIVCEILCIDYKYIFKGI 237 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRD 395 V GR E T + VDYAH SL+ + ++ G+ I + G G + Sbjct: 238 LG-SAVKGRGEIYKTKDGKKTLIVDYAHNELSLKRYFEFVKDEFKGKKHICIIGAPGGKA 296 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIR 450 +R +G + D I+T D+P E + I +EI+ IP + IE NR EAI+ Sbjct: 297 LNRRKEIGTLCYKNCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIE--NRTEAIK 354 Query: 451 TAIEML-NKQDVLVVAGKGHET 471 A+ N++ ++ + GKG ET Sbjct: 355 EAVNSYKNEETIISILGKGSET 376 >gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Plesiocystis pacifica SIR-1] Length = 437 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 11/141 (7%) Query: 344 GRFEFVG-------TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 GRFE + +R R+ +DYAHT +LE++L+ R + GR VVFG GG D Sbjct: 274 GRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCARELHPGRCFVVFGAGGSADP 333 Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453 KR +G +A +AD VT DNPR EDP I ++ GIP + + +R +AI AI Sbjct: 334 SKRAPLG-LAASVADRIFVTTDNPRDEDPSDIARQVCAGIPAGHPHVVELDRGQAIALAI 392 Query: 454 EMLNKQDVLVVAGKGHETVHI 474 D+++VAGKGHE I Sbjct: 393 AEAQPGDLVIVAGKGHERDQI 413 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G ++EA+S L G FTNLG DH+ H + + Y +K +LF L P Sbjct: 92 GPRFAAIEATSTTLAIGFATAWPFRVGVFTNLGHDHLRAHGSYEHYLASKAQLFLSLPPG 151 Query: 241 ESPAIIYADD 250 A++ ADD Sbjct: 152 GF-AVLNADD 160 >gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bryantella formatexigens DSM 14469] Length = 455 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 164/394 (41%), Gaps = 51/394 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R R++ ++ +DSR + G +F AI G DGH FIPQ AQGA ++ A + Sbjct: 24 RSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIPQVYAQGALCVLCEKAPA------- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P ++V++T K L A + ++ +TG+ GK+S + + + Sbjct: 77 -EAQGPYILVESTLKALMAIAEFYRQQLDIKVVGITGSVGKTSTKEMIASVLS----EKY 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 ++ T +F +N L P ++ L+ + V +H + HRL I + Sbjct: 132 RV--LKTPGNF--NNELGLPLTVF------QLTEEDEVAVLEMGINHFGEMHRLSKIARP 181 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KEVMKRAHN 262 TN+G H+++ + AK +F+ + P + DD S KEV Sbjct: 182 DVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKEVR----- 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVY 313 G +F ++ CAI ++G + F P+PG V Sbjct: 237 --------GITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFAVTIPIPGYHMVL 288 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A + A+G+ + +EKL + GRF + GG VD + +N + M Sbjct: 289 NALAATAVGRALGMSLEEIRRGIEKLQALGGRFRIL---EAGGITVVDDCYNANPMSMKA 345 Query: 374 K-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + GR I V G G+ + ++ + G++ Sbjct: 346 SLGVLADAPGRKIAVLGDMGELGENEQQLHGEVG 379 >gi|207108798|ref|ZP_03242960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPKX_438_CA4C1] Length = 207 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 18/178 (10%) Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYV 360 PL G + +YN L AG+ + + + + L LE LE + V GR E V + + V Sbjct: 32 PLLGRYNLYNIL--AGV-LGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSKPL---VVV 85 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 D+AHT++ ++ + ++ + + +I +FG GGDRD+ KRP MG IA A I+T DNP Sbjct: 86 DFAHTTDGMQQVFESFK---NQKITALFGAGGDRDKTKRPKMGAIASCYAHQIILTSDNP 142 Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 RSE+ E I +I+ GI IEK +R +AI A+E L +VL++ GKG E I Sbjct: 143 RSENEEDIIKDILKGINDSSKVVIEK-DRKKAILNALENLKDDEVLLILGKGDENTQI 199 >gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus suis GZ1] Length = 398 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 172/398 (43%), Gaps = 66/398 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + + + +S DSR + +F A + KE F+ +AI G + V Y + Sbjct: 30 WTDVQFDALSYDSRTVSPTTLFFAKGLAFKKE----FLEKAIEAGLDFYVSEIDYEV--- 82 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQR 139 P ++V + ++ +SL A +G HP+ +LA TGT GK++ A F I ++ Sbjct: 83 ------GIPAIIVHDIKQAMSLIAMDFHG-HPQKQLKLLAFTGTKGKTTAAYFAFNILKQ 135 Query: 140 SGLSSFQIGPTSTIS--SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 S + +T+ +F + + LTTP + L ++ G+TH+ +E SS Sbjct: 136 SKKPAMLSTMNTTLDGKTFFK-STLTTPESLDLFAMMAEAVKNGMTHLIMEVSSQAYLVK 194 Query: 198 RLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G+ G F N+ DHI H T + YF K LL S A+I Sbjct: 195 RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHK-----RLLMDNSRAVIV-------- 241 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-- 313 NAG V + ++ Q++ S G DF L G + + Sbjct: 242 ------NAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSA-GFDFTATGKLAGHYDIQLI 294 Query: 314 ------NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVD 361 NA+ A C+ +G LE +H VPGR E V T G +++VD Sbjct: 295 GGFNQENAIAAGLACLRLGAS-------LEDIHTGIAQTNVPGRME-VLTQQNGAKVFVD 346 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 YAH +S++ ++ + +G++ ++ G G++ + +R Sbjct: 347 YAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRR 384 >gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Candidatus Nitrospira defluvii] Length = 487 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 33/340 (9%) Query: 13 ELINQLSIFPM-----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 E+ LS+ P Q +++I V +DSR ++ G +F+A G + D H F+P+A+AQG Sbjct: 17 EICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKALAQG 76 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 A +V Y L A R+ P+L+ V +T + A+ + P ++A+TG++GK Sbjct: 77 AVCAIVQEDYRLP--PAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGSNGK 134 Query: 127 SSVASFVQQ-ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184 ++ V Q + QR T+ + +NR+ P ++ L+ V Sbjct: 135 TTTKEMVAQVVAQR----------WKTLKTEGNLNNRIGVPQTLF---QLAPRHQAAVIE 181 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + V+ G + + G TN+G DH+++ + + AK L + LP++ Sbjct: 182 MGVD--QQGQTTRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDH-LPQDGAV 238 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDF 300 ++ ADD Y + RA CRV++ G K + K + + + + Sbjct: 239 VLNADDEYFDYLAARAQ---CRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQT 295 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + G+ V NAL AA + +G+ + E L K Sbjct: 296 EIRIRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFR 335 >gi|303232214|ref|ZP_07318915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Atopobium vaginae PB189-T1-4] gi|302481692|gb|EFL44751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Atopobium vaginae PB189-T1-4] Length = 652 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 118/463 (25%), Positives = 185/463 (39%), Gaps = 66/463 (14%) Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145 LVV + R +++ + +G+ P+ L G +G + S ++ C G++S Sbjct: 153 LVVTDIRHAMAVCSPIAWGR-PDKQLCCIGVTGTKGKSTTTYMLRSILEAHCAARGITST 211 Query: 146 Q-------IGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 IG ST F + TTP L + L ++ + ++ +E SS L Sbjct: 212 HGASPVGIIGSISTYDGFINEKSTNTTPEAPDLWRHLHNAAAAKLAYMVLEISSQALKYE 271 Query: 198 RLDGIKLIAGSFTNLGRDHI---------DYHQTQQAYFNAKMRLFEELLPKESPAI--- 245 R+ G+ L A +F N+ RDHI DY ++ F+ L K + I Sbjct: 272 RVYGLHLYASAFLNISRDHISPVEHPTFEDYFASKLTIFSYAKHSVVNLNSKHAARIANT 331 Query: 246 ---------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---- 292 D + A R S Q +++ A+ N+ T Sbjct: 332 ACSCSDTHFCMVDVPKNDASADSAQADDARADSA--QADEFTREELKALLNQYPCTRATD 389 Query: 293 ---------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALV--LEHLEKLH 340 + V G P+ G F NALVA L +G+ D A+V + H Sbjct: 390 VTCARGGFAMRVSGMAQPVYIPMHGSFNAQNALVALTLARLVGVGDDAIVKGIAHTR--- 446 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399 VPGR EF+ T VDYAH S + +IR S RI VFGC G++ +R Sbjct: 447 -VPGRMEFIPTTHPRIHGIVDYAHNRLSFQTFFASIRREFPSARIYAVFGCPGNKAFERR 505 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML 456 + +IA AD I+T D+P SED I E+ +P + + NR +AI A+ Sbjct: 506 RDLPEIAGAYADEIILTKDDPGSEDTRTICEEMASHLPAHARYCIEPNRAQAIFDAVTDA 565 Query: 457 NK---QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 ++ V+ + GKGHE +G D + + + + Sbjct: 566 HRAQVDSVICMLGKGHENTQHEAHGYSSYPSDARVYADAIAAV 608 >gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T92] Length = 125 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 50/95 (52%), Positives = 62/95 (65%), Gaps = 6/95 (6%) Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436 R+ VVFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 3 RLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGD 62 Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E +R +AIR A+ DV+++AGKGHET Sbjct: 63 AQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHET 97 >gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale M104/1] Length = 464 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 59/377 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G++F+ I G + DGH FIP QGA AIV+S + L D + P ++V Sbjct: 39 DSRQVKEGYLFIPIKGERVDGHRFIPTVFEQGA-AIVLSE-HELTDPAG------PYVLV 90 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++T + A+ ++ +TG+ GK+S + + ++ + T + Sbjct: 91 ESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214 F +N + P I+ + S V + + S G + HRL + TN+G Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259 H+++ + + AK FE ++P ++ A++ ADD Y KE Sbjct: 197 CHLEFLRDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASD 255 Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 H + + ++G+ G H ++ EG +FD +PGE VYNA+ Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAHIHIPGEHNVYNAMA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 AA + + +G+ A + +EK + GR F+ T+ G +D + +N + M + Sbjct: 302 AAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358 Query: 377 RTITSGRIIVVFGCGGD 393 + GR I V G G+ Sbjct: 359 LSHAKGRTIAVLGDMGE 375 >gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase [Bacillus cereus AH187] Length = 237 Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 17/216 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G +D H F+ A+ GA A++V +++ Sbjct: 22 KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 132 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 FTNL +DH+DYH+T Y + K LF L Sbjct: 192 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 227 >gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus BDRD-ST26] Length = 244 Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 17/216 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G +D H F+ A+ GA A++V +++ Sbjct: 29 KITGLEMDSRKITNGNLFICVSGIDGFLKDRHQFVEDAVKNGAVALIVERDVNIE----- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 84 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 138 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 139 HTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 198 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 FTNL +DH+DYH+T Y + K LF L Sbjct: 199 CNFKIAVFTNLTQDHLDYHETFDEYKHVKSLLFARL 234 >gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium rectale DSM 17629] Length = 464 Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 59/377 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G++F+ I G + DGH FIP QGA AIV+S + L+D + P ++V Sbjct: 39 DSRQVKEGYLFIPIKGERVDGHKFIPNVFEQGA-AIVLSE-HELKDPAG------PYVLV 90 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +T + A+ ++ +TG+ GK+S + + ++ + T + Sbjct: 91 GSTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214 F +N + P I+ + S V + + S G + HRL + TN+G Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259 H+++ + AK FE ++P ++ A++ ADD Y KE Sbjct: 197 CHLEFLGDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASD 255 Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 H + + ++G+ G H ++ EG +FD +PGE VYNA+ Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAQIHIPGEHNVYNAMA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 AA + + +G+ A + +EK + GR F+ T+ G +D + +N + M + Sbjct: 302 AAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358 Query: 377 RTITSGRIIVVFGCGGD 393 + GR I V G G+ Sbjct: 359 LSHAKGRTIAVLGDMGE 375 >gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Eubacterium rectale ATCC 33656] Length = 464 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 59/377 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G++F+ I G + DGH FIP QGA AIV+S + L D + P ++V Sbjct: 39 DSRQVKEGYLFIPIKGERVDGHKFIPTVFEQGA-AIVLSE-HELTDPAG------PYVLV 90 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++T + A+ ++ +TG+ GK+S + + ++ + T + Sbjct: 91 ESTTDAMKKLAAFYRKSLDIKVVGITGSVGKTSTKEMISSVLEQ------KYSVHKTAGN 144 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTNLGR 214 F +N + P I+ + S V + + S G + HRL + TN+G Sbjct: 145 F--NNEIGLPLTIFGIR-----ESHQVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGY 196 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------AYSKEVMKR 259 H+++ + AK FE ++P ++ A++ ADD Y KE Sbjct: 197 CHLEFLGDRDGVLKAKTECFEHMMP-DAVAVLNADDDKLATVQTVNGKPAIYYGKESASG 255 Query: 260 AHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 H + + ++G+ G H ++ EG +FD +PGE VYNA+ Sbjct: 256 VHKSVYTTNIENLGFDGMKAHF-------------VTPEG-EFDAHIHIPGEHNVYNAMA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 AA + + +G+ A + +EK + GR F+ T+ G +D + +N + M + Sbjct: 302 AAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTH---GMTVIDDCYNANPVSMKSSIEV 358 Query: 377 RTITSGRIIVVFGCGGD 393 + GR I V G G+ Sbjct: 359 LSHAKGRTIAVLGDMGE 375 >gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Bacillus cereus Rock3-42] Length = 272 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 17/216 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 36 EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDINIE----- 90 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 91 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLIEKILSDYGY 145 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +G + S + T P L + L + +Q + +E +S GL R+ G Sbjct: 146 HMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKG 205 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 FTNL +DH+DYH T Y + K LF L Sbjct: 206 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 241 >gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus reuteri 100-23] Length = 459 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 174/376 (46%), Gaps = 43/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ ++ VS DSRH+ G +FV + G +DGH ++P A GA A + +S + + D Sbjct: 20 QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+LVV++ L K ++AVTG++GK++ + I Sbjct: 77 ----QTHPLLVVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH-VSVEASSHGLDQHRLDGI 202 S Q T T ++F +N + P ++ L+ + T V VE DQ LD + Sbjct: 127 STQFNVTKTYANF--NNEIGVP--------VTLLNMESNTEAVVVEMGMDRFDQ--LDFL 174 Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL+ T +G HI++ T+ +AKM + L KE +++ D E + Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316 R + R + G Q + ++H++ +Q++ +V E D +F P+ GE+ + NAL Sbjct: 231 RVKDLTQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374 A + + I A + + L + + R E+V G N G +I D Y + + +LK Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346 Query: 375 NI-RTITSGRIIVVFG 389 I T GR I V G Sbjct: 347 TIAETPVDGRRIAVLG 362 >gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 Q G +G T Q R TTP PI + L+ L G V++E SSH Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179 Query: 193 GLDQHR 198 GLDQ R Sbjct: 180 GLDQGR 185 >gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T92] gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T85] gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T92] gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis T85] Length = 120 Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 6/92 (6%) Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGF 439 +VFG GGDRD GKR MG+IA LAD+ +VTDDNPR EDP IR EI+ G Sbjct: 1 MVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQV 60 Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 +E +R +AIR A+ DV+++AGKGHET Sbjct: 61 VEIADRRDAIRHAVAWARPGDVVLIAGKGHET 92 >gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC 27678] gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC 27678] gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] Length = 521 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 125/500 (25%), Positives = 213/500 (42%), Gaps = 60/500 (12%) Query: 30 INEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ D+R ++ G +FV E F+ +G A V + Y+ R+ Sbjct: 46 VGSITYDTRKVEPGSMLFVKGRFKPE----FLDGIDGKGLAAYVAETEYA-------DRT 94 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++V++ K +SL ++ YG P+N L V G + + + L+ + G Sbjct: 95 KAIGIIVEDVHKAMSLLSAAFYGM-PQNELTVIGIT--GTKGKTTTAYLAHAILNEYSHG 151 Query: 149 PTSTISSF--------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + SS ++LTTP + + + + G+ ++ +E SS +R+ Sbjct: 152 RCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVH 211 Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ G+F N+ DHI H T + YF K R L+ ++ AD + +M+ Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRR----LIANSRSLVLGADCNHRDLLMQ 267 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQ 311 A +AG +V L + NK +SV G D + + GEF Sbjct: 268 DAADAGVKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327 Query: 312 VYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NA A + I G+ +S + + ++ VPGR E V G +Y+D+AH S++ Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQ-VPGRMERVKAGD-GLLVYIDFAHNYLSVK 385 Query: 371 MILKN-IRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ +RT RI +V G G + +R + K AL + I T D+P EDP Sbjct: 386 SLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMD 445 Query: 428 I-------------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I R +I+ IEK AI A E ++ ++++V GKG ET +I Sbjct: 446 IARQMQSYVTDPTARTQIVVPRELAIEK-----AIADAREHADRFNIVLVIGKGDETRNI 500 Query: 475 VTNGEKKMSVDCDIIREILG 494 + D ++R +LG Sbjct: 501 INGKPVPYEGDGAVVRRVLG 520 >gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter sp. PRwf-1] gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. PRwf-1] Length = 505 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 36/382 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + +D+R I+AG IF+AIVG DGH F+ A+ +GA A +VS S Sbjct: 41 RATRIITDTRKIEAGDIFLAIVGENFDGHSFVASAVEKGAIATIVSQPLS--------EV 92 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N P L VD+TR A+ +HP ++A+TG+SGK++V ++ I + +S + Sbjct: 93 NVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTGSSGKTTVKEMLRHIFAQVEAASADV 152 Query: 148 GPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLI 205 T+ ++ +N P + L + Y + G HV A + + +K Sbjct: 153 QSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTAAM-------VKPD 205 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ + K +++ L + S A++ DD YS ++M A Sbjct: 206 VACILNIGTAHLGEFGGRDNIAKTKAEIYQP-LTQASTAVVPCDDDYSDQLMSTAKQHTD 264 Query: 266 RVLSVGYQ----------GKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQV 312 ++ G+ + K A+ ++ Q+ ++EGK L P+ GE V Sbjct: 265 TIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEGKAPAMVSVLLPMAGEHNV 324 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM- 371 NAL AA A G+ + L+ + L + GR G G +D + +N M Sbjct: 325 SNALAAAACAYAAGVSAELIAQGLNQAKSSKGRL---GRQRLGQHHIIDDTYNANPNSMR 381 Query: 372 ILKNIRTITSGRIIVVFGCGGD 393 ++ G I+V G G+ Sbjct: 382 AAADVLAAQEGTRILVLGDIGE 403 >gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] Length = 521 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 125/500 (25%), Positives = 213/500 (42%), Gaps = 60/500 (12%) Query: 30 INEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++ D+R ++ G +FV E F+ +G A V + Y+ R+ Sbjct: 46 VGSITYDTRKVEPGSMLFVKGRFKPE----FLDGIDGKGLAAYVAETEYA-------DRT 94 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++V++ K +SL ++ YG P+N L V G + + + L+ + G Sbjct: 95 KAIGIIVEDVHKAMSLLSAAFYGM-PQNELTVIGIT--GTKGKTTTAYLAHAILNEYSHG 151 Query: 149 PTSTISSF--------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + SS ++LTTP + + + + G+ ++ +E SS +R+ Sbjct: 152 RCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVH 211 Query: 201 GIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ G+F N+ DHI H T + YF K R L+ ++ AD + +M+ Sbjct: 212 GLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRR----LIANSRSLVLGADCDHRDLLMQ 267 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQ 311 A +AG +V L + NK +SV G D + + GEF Sbjct: 268 DAADAGIKVTEFALHDAARGLTSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFN 327 Query: 312 VYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NA A + I G+ +S + + ++ VPGR E V G +Y+D+AH S++ Sbjct: 328 VTNAAAAVAIAIEAGVPESDPSIAAMCRVQ-VPGRMERVKAGD-GLLVYIDFAHNYLSVK 385 Query: 371 MILKN-IRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427 ++ +RT RI +V G G + +R + K AL + I T D+P EDP Sbjct: 386 SLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMD 445 Query: 428 I-------------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474 I R +I+ IEK AI A E ++ ++++V GKG ET +I Sbjct: 446 IARQMQSYVTDPTARTQIVVPRELAIEK-----AIADAREHADRFNIVLVIGKGDETRNI 500 Query: 475 VTNGEKKMSVDCDIIREILG 494 + D ++R +LG Sbjct: 501 INGKPVPYEGDGAVVRRVLG 520 >gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402] Length = 268 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 23/196 (11%) Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 K++ L G F V N L + I G+D A ++E L + V GR + + Sbjct: 59 KEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDF 117 Query: 357 RIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 + +DYAHT +S I +I+ + G++I +FG GG+RD KRP G+IA +DI Sbjct: 118 EVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIV 177 Query: 414 IVTDDNPRSED------------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 I+ D++PR ED PEK R E + IP +R AI+ A + K D Sbjct: 178 ILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP------DRPSAIKKAFSLAGKNDA 231 Query: 462 LVVAGKGHETVHIVTN 477 +++ GKGHE I + Sbjct: 232 VLLLGKGHENSIIFKD 247 >gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.] Length = 493 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 149/348 (42%), Gaps = 23/348 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I G +FVAI GN DGH F + QG + IV++ + + +++ Sbjct: 32 VSIDSRTIALGELFVAIKGNNHDGHAFAEAVVEQGIKGIVINKQKAGELLCDKLKNQDVF 91 Query: 93 LV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + VDNT K L A+ + +++A+TG++GK+S I R + S Sbjct: 92 CIEVDNTTKALGDLAAYNRTRADVSVVAITGSNGKTSTKEMANAIVSR------KFDTLS 145 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 T + +N + P + L SSQ + + + G + K G TN Sbjct: 146 TTGNL--NNEIGLPLTL-----LKLCSSQKWAVLELGMNHPGEIARLAEICKPDIGIITN 198 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +GR H++ +T + NAK L + + P + AI+ ADD + VM A V+ G Sbjct: 199 IGRGHLEGLKTIEGVMNAKGELLDGIKP-DGTAILNADD---ERVMCLARKTTRNVIYFG 254 Query: 272 Y-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + I V N + + PG F V NAL AA + + + + Sbjct: 255 LSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMVSNALAAASVGYLLNLSAQ 314 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 + LE V GR T + G +D ++ +N S+E +K++ Sbjct: 315 EIKSGLENFAPVKGRMNI--TTLQNGVTIIDDSYNANPDSMEAAIKSL 360 >gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 511 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ +S+ I +FVAI G DGH +I QA +GA +V +DF I Sbjct: 25 IKKICYNSKFITESSLFVAIKGYITDGHKYILQAYEKGAVCAIV------EDF---IDCE 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P L V+NTR L+ + Y + NI+ +T T+GK++ + + +I +G + I Sbjct: 76 IPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKTTTSFMLDKIYNDAGYRTGII 135 Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G T S + LTTP + L + + + V++E SS + +R+ I Sbjct: 136 GTVYTKYSDITIPSVLTTPESLELQSFFRDMLKKKIEKVTMEVSSSSEELYRVKNIDFNI 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +F N R+HID H + + Y+ AK +L +E K + AI+ D Sbjct: 196 VAFNNFSREHIDQHGSFEKYYEAKSKLVKEA-SKNAVAILNMD----------------- 237 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 F H+K + + +T S+E D+DF Sbjct: 238 ---------FDHIKDLLTQTKARVITYSLENNDYDF 264 >gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 6_1_27] Length = 466 Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA +V S++ + Sbjct: 38 KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGATGAIVEKGRSVEGIAC---- 93 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VDNT A + ++A+TG+SGK++ V + + F + Sbjct: 94 ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 145 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T +F + I L K L L+++ V VE GL Q ++ + LIA Sbjct: 146 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 192 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K M R Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVK-AMDRLAKGK 250 Query: 265 CRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320 + I HL+ + K + + + D FD P+ GE VY+AL A Sbjct: 251 TITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIV 305 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 306 AGRVLGIKSNTIRKGLSEFSGTPMRQEIV 334 >gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7424] Length = 454 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 113/472 (23%), Positives = 196/472 (41%), Gaps = 69/472 (14%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 FP+ ++ I +S+DSR+I+ G IFVA+ G+K DGH F A+ +GA A+++ + Sbjct: 21 FPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGATALILD-----K 75 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 S + P +V+NT K A + I+AVTG+ GK++ + + + Sbjct: 76 KLSVLSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELIAAVLSTA 135 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G IG +N + P + L + GV +++ A G + Sbjct: 136 GKVHKSIG--------NYNNEIGVPKTLL---ELDHTHHYGVIEMAMRAK--GEISLLTE 182 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + G TN+G HI +Q+A AK L + + ++S AI+ D++ E Sbjct: 183 ITRPTIGVITNVGTAHIGRLGSQEAIAEAKCELLAQ-MSQDSIAILNHDNSLLLETASTF 241 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + ++ G +G + + + N Q T+ VEGK+F PLPG N L A Sbjct: 242 WQG--KTITYGLEGGDLSGQLI----NPQ--TLRVEGKEFP--LPLPGRHNALNYLAALA 291 Query: 321 LCIAIGIDSALVLEHL--------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 + + +D + E L + H +P + G S+ Sbjct: 292 VAKVLDLDWTPLTEGLTVNLPSGRSRRHQLPNNILILDETYNAGL---------ESMLAA 342 Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPE-- 426 L+ ++ R I V G G+R +GK DL D +V ++P++E Sbjct: 343 LQLLKETPGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAG 402 Query: 427 ---------KIRAEIIHGIPGFIEKGNRI--------EAIRTAIEMLNKQDV 461 K E+++ + G I+ G+RI E R +++N Q++ Sbjct: 403 ADGVATSCFKTHQEVVNYLQGLIKSGDRILFKASNSVELNRVVNDLINSQEI 454 >gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium breve DSM 20213] gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium breve DSM 20213] Length = 515 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 129/499 (25%), Positives = 217/499 (43%), Gaps = 64/499 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R + G + K D I QA G A + + YS A R+ P Sbjct: 44 ITYDTRKVTPGTLLCCKGRFKADYLTDIDQA---GLAAYMAETEYS-----AVTRA--PG 93 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQIGP 149 L+V++ RK +SL ++ YG+ P++ L V G +G A FVQ + L+++ G Sbjct: 94 LIVNDARKAMSLLSAEFYGR-PQDELTVIGITGTKGKTTTAYFVQAV-----LNAYSGGR 147 Query: 150 TSTISS---------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + SS +A+ + LTTP + + + ++ G+ ++ +E SS R+ Sbjct: 148 AALFSSVDNCLDGHTYAESD-LTTPESMDAFRMMREAANNGMRYLVMEVSSQAYKVERVY 206 Query: 201 GIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G+ AG+F N+ DHI H T + Y K ++ ++ AD ++ + + Sbjct: 207 GLTFDAGAFLNISPDHISAIEHPTFEDYLYCKRQITHNC----RTLVLGADCDHADLIRQ 262 Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314 A + V + G H V +GK DF L GEF N Sbjct: 263 DAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQGKAIGDFSLELEGEFNAAN 322 Query: 315 ALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH---TSNSLE 370 A A L A+G+ + + LE +H +PGR E + + YVDYAH ++ +L Sbjct: 323 AAAAIALSRAVGVPAGSEAFRALEHVH-IPGRMEHYESGNMVA--YVDYAHNYVSTKTLA 379 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + + R++VV G GD+ +R + K A D AD I+T +ED R Sbjct: 380 EFVTHKYADRNPRVVVVTGSVGDKAVDRREGIIKGAQDYADRIILT-----AEDTVHERM 434 Query: 431 -EIIHGIPGFIEKG--------NRIEAIRTAIE----MLNKQDVLVVAGKGHETVHIVTN 477 +I+H + G+I +R +AI A+E ++ +L+V GKG E V Sbjct: 435 IDILHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLVIGKGEERWIKVDG 494 Query: 478 GEKKMSVDCDIIREILGLI 496 D +++ + GL+ Sbjct: 495 KHAPYEGDDHVVKRLFGLL 513 >gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM 20098] gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM 20098] Length = 513 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 118/468 (25%), Positives = 205/468 (43%), Gaps = 50/468 (10%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F P+ + G E +++ + D S+ + P L+V++ RK LSL A+ Y HPE L Sbjct: 63 FRPEFL-DGTEERGLAAYVAESDLSS--HTTKPGLIVNDARKALSLLAAAFY-DHPERDL 118 Query: 119 AVTGTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSP 167 V G +G A F Q I L+++ G + SS ++ LTTP Sbjct: 119 TVIGITGTKGKTTTAYFTQSI-----LNTYSAGRCALFSSVDNCLDGHTYAESDLTTPES 173 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQA 225 + + + G+ ++ +E SS +R+ G+ +F N+ DHI H T + Sbjct: 174 LDAFRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTFED 233 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCA 284 YF+ K ++ S A++ D ++++ A AG V G + ++ Sbjct: 234 YFHCKRQII-----ANSRALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDP 288 Query: 285 IHNKQQVTISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + + +G+ L P+ GEF + NA A + G+ ++ H + Sbjct: 289 NNKEGFIATISDGERSVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNV 348 Query: 341 VVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDR 394 VPGR E + RGG +YVD+AH S++ ++ I + + RI +V G G + Sbjct: 349 QVPGRMERI----RGGDNLLVYVDFAHNYISVKSLVDEIERVYGERNPRITLVSGTTGGK 404 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-------- 446 +R + K AL + I T D+P EDP I ++ + + + Sbjct: 405 AIDRREGIVKGALGRVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVA 464 Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +AI A E ++ +V++V GKG ET +I+ D ++R +LG Sbjct: 465 KAIADAREHNDRFNVVLVIGKGDETRNIINGKPVPYEGDSVVVRRVLG 512 >gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] Length = 202 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 14/179 (7%) Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + + AL+A + +D + L L++L V GR V + + +DYAHT +S Sbjct: 2 YNILAALIAVHNLTGLPLDELVPL--LKRLVPVKGRMCRV-EAGQDFEVIIDYAHTPSSF 58 Query: 370 EMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 ++I+ +R GR+I VFG GG+RD KRP G+IA + D I+TD++PR EDP Sbjct: 59 QLIMPPVRERIKAKGGRVIAVFGSGGERDTVKRPEQGRIAAEYCDTIILTDEDPRGEDPV 118 Query: 427 KIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 ++ I G P FI +R AIR A + D +++ GKGHE I +G Sbjct: 119 ELLEMIAEGCPDKKRGEELFIIP-DRPTAIRKAFSLAQANDAVLLLGKGHENSIIGKDG 176 >gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella parvula ATCC 17745] Length = 452 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 40/329 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA +V S++ + Sbjct: 24 KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGATGAIVEKGRSVEGIAC---- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VDNT A + ++A+TG+SGK++ V + + F + Sbjct: 80 ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T +F + I L K L L+++ V VE GL Q ++ + LIA Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K M R Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVK-AMDRLAKGK 236 Query: 265 CRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAG 320 + I HL+ + K + + + D FD P+ GE VY+AL A Sbjct: 237 TITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIV 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 292 AGRVLGIKSNTIRKGLSEFSGTPMRQEIV 320 >gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus cereus NVH0597-99] Length = 258 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 17/216 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I +G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 EITGLEMDSRKITSGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDINIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +G + S + T P L + L + +Q + +E +S GL R+ Sbjct: 132 HTGLMGNNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERVKE 191 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 FTNL +DH+DYH T Y + K LF L Sbjct: 192 CNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARL 227 >gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri DSM 20016] gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus reuteri JCM 1112] gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM2-3] gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri MM4-1A] Length = 459 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 43/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ ++ VS DSRH+ G +FV + G +DGH ++P A GA A + +S + + D Sbjct: 20 QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+LVV + L K ++AVTG++GK++ + I Sbjct: 77 ----QTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q T ++F +N + P ++ L+ + T V G+D+ +LD + Sbjct: 127 STQFNVAKTYANF--NNEIGVP--------VTLLNMESNTEAVV--VEMGMDRFGQLDFL 174 Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL+ T +G HI++ T+ +AKM + L KE +++ D E + Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316 R + R + G Q + ++H++ +Q++ +V E D +F P+ GE+ + NAL Sbjct: 231 RVKDLAQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374 A + + I A + + L + + R E+V G N G +I D Y + + +LK Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346 Query: 375 NI-RTITSGRIIVVFG 389 I T +GR I V G Sbjct: 347 TIAETPVAGRRIAVLG 362 >gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f. nagariensis] gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f. nagariensis] Length = 696 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 17/248 (6%) Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDF 302 +I ADD ++E+++R +NA V++ G + +N + +V I Sbjct: 387 VINADDPATEELLRRLNNA-VPVVTFGMSNSRADVFVESYKNNIWETEVIIRTPTGRLQI 445 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 + L G YN + A +A+ ++ +E + + PGR E + + VD Sbjct: 446 ITNLLGRHNAYNLVAAVATGVALKAPLQSIVAGIEAVEI-PGRSEVIDEGQEFS-VVVDA 503 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 A + +L +L +R + +I VFGC G+ D RP MG +A +D IVT++NPR Sbjct: 504 AQSPETLASMLDALRRGGARQIFTVFGCSGNEDPSIRPKMGAVAHAKSDYVIVTNENPRL 563 Query: 423 EDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVVAGKGHE-- 470 EDP K + +++K +R AIR AI +DV+++AGKGH+ Sbjct: 564 EDPAKDQGRTPLWFEPYLQKAQRDNKRYIMEDRYSAIRAAIGTAGPEDVVLLAGKGHQDW 623 Query: 471 TVHIVTNG 478 H T+G Sbjct: 624 VEHADTDG 631 >gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri] gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri SD2112] Length = 459 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 43/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ ++ VS DSRH+ G +FV + G +DGH ++P A GA A + +S + + D Sbjct: 20 QWKDVEVTSVSFDSRHLDQGSLFVPLQG-AQDGHQYVPSAFTNGAVASLWASDHEITD-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+LVV + L K ++AVTG++GK++ + I Sbjct: 77 ----QTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q T ++F +N + P ++ L+ + T V G+D+ +LD + Sbjct: 127 STQFNVAKTYANF--NNEIGVP--------VTLLNMESNTEAVV--VEMGMDRFGQLDFL 174 Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL+ T +G HI++ T+ +AKM + L KE +++ D E + Sbjct: 175 SKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KEDGTLVFNGDEPLLE--E 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV-EGKDFDFLFPLPGEFQVYNAL 316 R + R + G Q + ++H++ +Q++ +V E D +F P+ GE+ + NAL Sbjct: 231 RVKDLAQRQMRFGRQ--LSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNAL 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSNSLEMILK 374 A + + I A + + L + + R E+V G N G +I D Y + + +LK Sbjct: 289 AAMEVGKILHITPAHMKQALANVELTENRAEWVKGKN--GEQILSDVYNSNPTAAKEVLK 346 Query: 375 NI-RTITSGRIIVVFG 389 I T +GR I V G Sbjct: 347 TIAETPVAGRRIAVLG 362 >gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Mycobacterium tuberculosis T17] Length = 262 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 45 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 101 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 102 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 160 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 161 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 219 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G+FTNL RDH+D+H + YF AK LF+ Sbjct: 220 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 253 >gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chthoniobacter flavus Ellin428] Length = 455 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 169/385 (43%), Gaps = 36/385 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR ++AG +FVA+ G+K DGH FI +A +GA +V ++F A + Sbjct: 26 VTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAIV------EEFPAELPPG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++V NT + L + ++ +TG++GK+S + +FQ+ Sbjct: 80 FGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDLTASVLG----ENFQV-- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T T + +N + P + A+ + G+ H A + + G Sbjct: 134 TKTDGNL--NNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPEV-------G 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI++ +++A K + E LP I+ A+D +S + R V Sbjct: 185 IITNIGMAHIEFLGSREAIAQEK-GMLAEALPPSGTLILSAEDEFSPAIAARTK---ADV 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + + + + TI+ EG+ +PGE V NA++A A G+ Sbjct: 241 VLAGINKGEVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRAFGL 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRII 385 L KL + GR E RG ++ D Y +S+ L+ + ++ + GR I Sbjct: 301 SLEECAAGLSKLRLTKGRLEQ--KMIRGIQVIDDTYNANPDSVAAALRTLASMPAVGRRI 358 Query: 386 VVFG----CGGDRDQGKRPIMGKIA 406 V G G + ++G R ++G++A Sbjct: 359 AVLGRMGELGVEAERGHR-LVGEVA 382 >gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T17] gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase MurE [Mycobacterium tuberculosis T17] Length = 276 Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G+FTNL RDH+D+H + YF AK LF+ Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267 >gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus oris PB013-T2-3] Length = 459 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 39/374 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ ++ VS DSRH++ G +FV + G DGH ++ A GA A + +S + L + Sbjct: 20 QWKDIEVTSVSFDSRHLEKGALFVPLQG-AHDGHQYVETAFTNGAAATLWASDHELTN-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 S+ P+LVV + K L K ++AVTG++GK++ + I Sbjct: 77 ----SDHPVLVVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTKDMIASIL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q+ T T ++F +N + P ++ L+ + T V V G+D+ +LD + Sbjct: 127 STQLNVTKTYANF--NNEIGVP--------VTLLNMEANTEVVV--VEMGMDRFGQLDFL 174 Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL++ T +G HI++ T+ +AKM + L KE +Y D + + Sbjct: 175 SKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--KEDGLFVY--DGDEPLLNE 230 Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 RA N + G Q ++ V A + ++ E D F P+ GE+ V NAL Sbjct: 231 RAANITQQTTRFGRQLTDDLYATSVNAGSRSIEFKVN-EWPDEQFTIPMVGEYNVNNALA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + + I + L + + R E+ + + G +I D Y + + +LK + Sbjct: 290 AMAVAKRLHISPNHIKTALANVELTENRAEWFKSKN-GAQILSDVYNSNPTAAKQVLKTL 348 Query: 377 RTI-TSGRIIVVFG 389 + GR I V G Sbjct: 349 AEMPVQGRRIAVLG 362 >gi|2959999|emb|CAA76495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter jejuni] Length = 350 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 44/296 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLAK 172 I+ +TGT+GK++ A+ + I G ++ G T +F D ++ T SPI K Sbjct: 85 IIGITGTNGKTTTAAAIYSILLDLG---YKCGLCGTRGAFINDEQIDEKSLTTSPIL--K 139 Query: 173 ALSYL---SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 L YL + + + SSH L +R +G+ A FTN+ +DH+D+ T Y A Sbjct: 140 TLEYLLIATPKKCDFFIMGVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEA 199 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K F + ES I D K ++ A + G + ++ K ++ Sbjct: 200 KELFFTD----ESLKFINKDALAIKFNVRNA-------FTYGIENPALYQIKAYSLEEGI 248 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV---LEHLEK----LHVV 342 ++ + + F PL G F +YN LVA+ C+ + LV L+ LEK V Sbjct: 249 STIVTNKNQTFHIDSPLLGLFNLYNLLVASA-CV-----NELVKPDLKDLEKAISGFGGV 302 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 GR E V ++G + VD+AHT + +E +L T+ + ++IVVFG GGDRD+ K Sbjct: 303 CGRVEQV---AKG--VIVDFAHTPDGIEKVLD---TLKNKKLIVVFGAGGDRDKTK 350 >gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus stomatis DSM 17678] Length = 469 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 110/450 (24%), Positives = 189/450 (42%), Gaps = 61/450 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DSR G +FVAIVG DGH+F+ A +G +VS+ + D Sbjct: 26 EITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGCRFFLVSNESYITDRF----K 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ ++ VDNT L L A + +TG+ GK++ V + S F Sbjct: 82 DSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDMVYSVLA----SKF--- 134 Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +TI + +N+ P ++ + + + S G ++ + ++ G Sbjct: 135 --NTIKNEKNYNNQFGVPLTLFRLEP-----GHQCAVIEMGMSGFGEIEYLANIVRPKIG 187 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---G 264 TN+G HI++ +Q+ F AKM + + S II DD+Y + ++R N+ Sbjct: 188 IITNIGMSHIEHLGSQEGIFKAKMEITSG-FDQTSSLIINGDDSYLRTELERYRNSQKDS 246 Query: 265 CRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V S G Q + +K + T S E + ++F P GE V NA+ A Sbjct: 247 YKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAA---- 302 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--------YAHTSNSLEMILK 374 I G + + +E + K G +FV T +R I D Y + +S+ LK Sbjct: 303 ILAGHITGMTMEEISK-----GLLDFVATENRQDIIKTDRFTLINDVYNASPDSMIAALK 357 Query: 375 NIRTITSGRIIVVFG-C---GGDRDQGKRPIMGKIALDLADIAIVT---------DDNPR 421 ++ R + + G C G ++G R + G ++D ADI I + R Sbjct: 358 VLKLYKDRRRVAILGDCLEMGQYAEEGHRRV-GYQSIDKADIIITAGHAAKFIGVEAMER 416 Query: 422 SEDPEKI-----RAEIIHGIPGFIEKGNRI 446 D ++ + E+I +P +E G+ I Sbjct: 417 GFDLSRVFHFETKEELIDSLPKIVEDGDVI 446 >gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 514 Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 174/391 (44%), Gaps = 49/391 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V S+ ++ +FVAI G + DGH FI A+A GA A +V +DF + Sbjct: 27 EISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIV------EDF---VEE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQICQRSGLSSF 145 + + V N+R L+ AS +G+ P L VTG ++GK+S A + I ++G + Sbjct: 78 DILQIKVKNSRIALAKVASIFFGE-PSKKLKVTGITASNGKTSTAFMTKCIYDKAG---Y 133 Query: 146 QIGPTSTISSFAQD----NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 G + T+ + D + LTTP L + ++G+ HV +E SS + R Sbjct: 134 NTGISGTVYTKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELARAYA 193 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +F N+ +HI H + + Y++ K RL + AI+ +D ++ + Sbjct: 194 TDFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRHA-KDDCVAILNSDFELINDLR---N 249 Query: 262 NAGCRV------------------LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 N +V LS G+ GKF K + + I+++ + FD Sbjct: 250 NTKAQVVTYSLKNNLEDISIDNLDLSTGF-GKF----KFIVNRDIKLKGITIKKQSFDVE 304 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + G V NA+VA + + GID +L ++ V RFE + G +I D+ Sbjct: 305 LKVAGYSSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVERRFEVIF--DEGFKIVDDHF 362 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 N++E+ L + + + +++ G R Sbjct: 363 ANKNNIEVTLDTLSKMDYKNLDILYAIRGSR 393 >gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 94/331 (28%), Positives = 148/331 (44%), Gaps = 44/331 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + ++S+D+R I+AG++FVA+ G+ DGH FI AI +GA A +V S+ Sbjct: 24 QFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKGATAAIVEKGRSVDGIIC---- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + V+NT K A+ + ++A+TG+SGK++ V + S + Sbjct: 80 ----VEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKEMVAAVL------STEFN 129 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T +F + I L K L LS + V VE GL Q ++ + LIA Sbjct: 130 VLKTEKNFNNE--------IGLPKTLLQLSPEHEACV-VEMGMRGLGQ--IEELALIAEP 178 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +Q+A AK L L P +S AI+ DD + K + A Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGP-DSVAILNEDDHFVKAMSSIAEG-- 235 Query: 265 CRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318 + ++ G HL+ + K + + + D FD P+ GE VY+AL A Sbjct: 236 -KTVTYGIHSNATVIGSHLR-----YKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +G+ S+ + + L P R E V Sbjct: 290 IAAGRVLGVKSSKIKKGLSDFTGTPMRQEIV 320 >gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis CPHL_A] gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium tuberculosis CPHL_A] Length = 404 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 10/214 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + V+ ++ + G +F A+ G+ G + AIA+GA A++ A + + + Sbjct: 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPA-GVAEIAG-- 115 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---FVQQICQRSGLS 143 R+ P+LV R L A+ +YG HP L V G +G S + V+ + +G Sbjct: 116 RAAVPVLVHPAPRGVLGGLAATVYG-HPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV 174 Query: 144 SFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T I D + LTTP L L+ + +GV V +E SSH L R+DG Sbjct: 175 AGLIG-TIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG 233 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + G+FTNL RDH+D+H + YF AK LF+ Sbjct: 234 TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFD 267 >gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister invisus DSM 15470] Length = 459 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 100/397 (25%), Positives = 175/397 (44%), Gaps = 44/397 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R I G +F+A+ GN DGH F+ A GA +++S S + T+ + Sbjct: 29 VNTDTRTISPGELFIALQGNTFDGHHFLNDACINGASMVIISERSSFKAVPRTV----SV 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V NT+ L A K ++AVTG++GK++ + + + L + ++ +T Sbjct: 85 ILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKNMI------AALVASKLNVCAT 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----G 207 +F + + +L+ LS T VE GL Q + + IA G Sbjct: 139 QKNFNNE----------IGLSLTLLSMTPETEACVVEMGMRGLGQ--IAELCRIAAPTIG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI +Q+ AK L E LP + AI+ DD Y V++ + Sbjct: 187 VVTNVGTSHIGILGSQENIAKAKGELIES-LPDKGIAILNEDDPY---VIRMGDTFSGNI 242 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + G G + +H ++ +N + + + F + G VYNAL A +G Sbjct: 243 IGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATARVLG 302 Query: 327 IDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382 ID + + L + +PG R F N G +D ++ +N S+EM +R + Sbjct: 303 IDVNRIQKALSEF--LPGAQRQFFTEIN---GVTVIDDSYNANPLSMEMAFHAMRQVNGK 357 Query: 383 RIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVT 416 +V G G+ + + +GKIA ++ ++T Sbjct: 358 HYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMIT 394 >gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 503 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F +A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVDNT L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL GS + R T+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERL-------GSLLGVAR-------TKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309 ++ ++ G RVL G Q + +H Q T+ + PLPG Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAQIALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ + L + V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIADGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346 >gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum PSI07] Length = 482 Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 160/375 (42%), Gaps = 22/375 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR +Q G +FVA++G + D H F+P +A+GA A++VS + A Sbjct: 27 DAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPLA----GALD 82 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 S +L V +TR L A+ + P ++AVTG++GK++V + + R+ Sbjct: 83 LSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFARA------ 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205 +G + +++ N + I L L L +Q V +H + L I + Sbjct: 137 VGEEARLATAGNLN-----NDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLATIAQPT 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNA 263 N R+H ++ + +A + LP + A+ D A E + RA Sbjct: 192 VALINNAQREHQEFMVSVEAVAIEHAAVLAA-LPADGVAVFPRDAANGGEYAPLWRAAAG 250 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 RVL G +G + V + Q + + F F PL G NAL A + Sbjct: 251 TRRVLDFGIEGGAVS-ATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAATACSL 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG 382 A GI ++ + L V GR + GG + D Y +S+ + + T+ + Sbjct: 310 AAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALATLPAP 368 Query: 383 RIIVVFGCGGDRDQG 397 R +V+ G QG Sbjct: 369 RWLVLGDMGEVGTQG 383 >gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas perforans 91-118] Length = 503 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 156/358 (43%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F +A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLADGSLYVALRGERFDGHDFATEAVARGASGVLVDRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVDNT L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL GS + R T+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERL-------GSLLGVAR-------TKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309 ++ ++ G RVL G Q + +H Q T+ + PLPG Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAPIALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ + L + V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIADGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346 >gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Asticcacaulis excentricus CB 48] gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Asticcacaulis excentricus CB 48] Length = 462 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 33/364 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR +Q G IF+A+ G + DGH F+ QA AQGA + P Sbjct: 33 ITFDSRQVQPGDIFLALSGVR-DGHDFVGQAFAQGAVCALTRKPVD----------GGPC 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V + K L + + P AVTG+ GK+SV V R+G + S Sbjct: 82 LMVPDVLKALEKLGAYARDRAPAMRGAVTGSVGKTSVTQMVMAALSRAGRAH------SA 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + SF +N + P + LA+ + + + V + + ++ L ++ A T + Sbjct: 136 VKSF--NNHIGVP--LTLAR-MPADTERAVFEIGMNHANEITPLSEL--VEPDAVIITTV 188 Query: 213 GRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G H + + ++ AK +F+ L AI+ AD+ + E+ +RA G +V G Sbjct: 189 GAVHTENFPDGEEGVMKAKAEIFDGL-KYGGLAILNADNHWFAELNERASEMGAKVQCFG 247 Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +G L + + QV ++ G+D F G+ Q NAL +C A+ +D+A Sbjct: 248 EAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNALSVLLMCEALKVDTA 307 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI-----LKNIRTITSGRI 384 L L + GR GG + +D ++ +N + M+ L R +T GR Sbjct: 308 TTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVATLNALAARRLVTGGRR 367 Query: 385 IVVF 388 I V Sbjct: 368 IAVM 371 >gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. 3_1_44] Length = 466 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 44/331 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K ++S+D+R I++G++FVA+ G+ DGH FI AI +GA +V +++ + Sbjct: 38 KFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIAC---- 93 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VDNT A + ++A+TG+SGK++ V + + F + Sbjct: 94 ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 145 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T + I L K L L+++ V VE GL Q ++ + LIA Sbjct: 146 KTEK----------NYNNEIGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 192 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K + A Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 249 Query: 265 CRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVA 318 + ++ G + HL+ + K + + + D FD P+ GE VY+AL A Sbjct: 250 -KTITYGIERNATCIGSHLR-----YKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 303 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 304 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 334 >gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 495 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 147/342 (42%), Gaps = 23/342 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F A+AQGA ++V + T+ Sbjct: 24 IDAVGNDTRALSNGSLYVALRGERVDGHDFAADALAQGASGLLV------ERLLPTL--G 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV NT L+ A+ + ++A+TG++GK+SV + + I +G G Sbjct: 76 VPQVVVQNTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAILTEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T + ++N + P + A V + A G + D + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAP-----DDADVAIYEMGAGKPGDIAYLTDIARPQVALV 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN---AGCR 266 N+ H++ + K ++ LP + A+I ADDA+ ++ H G R Sbjct: 188 NNIAPAHLERLGSLLGVAQTKGAIYAA-LPSDGVAVINADDAFGAWFEQQLHAQPVPGRR 246 Query: 267 VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 VL G Q I +++ + Q T+ + PLPG V NAL A GL + Sbjct: 247 VLRYGLQASADIRARQLRLQADGAQFTLVTPQGEAQVTLPLPGRHNVLNALAATGLALGA 306 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GI ++ L + V GR + GG + VD ++ +N Sbjct: 307 GIALPIIAAGLAQARPVAGR--QIAHRLPGGAVLVDDSYNAN 346 >gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus sp. Y-400-fl] Length = 497 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 113/449 (25%), Positives = 184/449 (40%), Gaps = 63/449 (14%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L +L+Y P +I Q P W +I V +DSR + G +FVA+ G + DGH F+ Sbjct: 2 IRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFL 61 Query: 61 PQAIAQGAEAIVVSS------AYSLQDFS--------------ATIRSNTPILV-VDNTR 99 + +GA A +VS A +L + AT+ + +L+ VD+ Sbjct: 62 ADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPL 121 Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159 L A ++ +TG+ GK+S V +C R L + + S + + Sbjct: 122 FALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRR-LRTLK-------SQRSFN 173 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 + +T P A L + V + + + G + + G TN+G H++ Sbjct: 174 SEVTLP-----ATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLER 228 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IH 278 + +A NAK L E LP + I+ ADD V A RVL+ GY + Sbjct: 229 LGSIEAIANAKAELPES-LPADGWCILNADD---HRVAAMASRTAARVLTYGYAPNADVR 284 Query: 279 LKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 L V + H ++T+ EG+ PL G Y AL A + +G+D + E L Sbjct: 285 LLDVVS-HGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGL 343 Query: 337 E------KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389 +L +VPG+ G +D + + L I + T GR I V G Sbjct: 344 REPGEQLRLRIVPGQH---------GTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLG 394 Query: 390 ----CGGDRDQGKRPIMGKIALDLADIAI 414 G +G + + G A +AD+ + Sbjct: 395 EMLELGAASVEGHQQV-GAAAATMADVLV 422 >gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria marthii FSL S4-120] gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria marthii FSL S4-120] Length = 123 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 3/92 (3%) Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445 GCGGDRD+GKRP M KIA+D A I T DNPRSE+P I ++I G+P ++ NR Sbjct: 10 GCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENR 69 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +AIR AI DV+++AGKGHE ++ + Sbjct: 70 RDAIRFAINEAKTGDVILIAGKGHEDYQLIGD 101 >gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Veillonella parvula DSM 2008] Length = 452 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 44/331 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K ++S+D+R I++G++FVA+ G+ DGH FI AI +GA +V +++ + Sbjct: 24 KFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIAC---- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VDNT A + ++A+TG+SGK++ V + + F + Sbjct: 80 ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T + I L K L L+++ V VE GL Q ++ + LIA Sbjct: 132 KTEK----------NYNNEIGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K + A Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235 Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + ++ G + G + KK + + T + FD P+ GE VY+AL A Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320 >gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii] gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii] Length = 513 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 41/270 (15%) Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVE 296 P+ ++ ADD ++++++R A V++ G +G + + + + + ++ + Sbjct: 170 PETQALVLNADDPAAEQLLERLGGA-VPVVTYGVVNKGADVVAESIKSNIWETELIVRTP 228 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G + L G V N L A +A+ A ++ +E + + PGR E + Sbjct: 229 GGRLQIITNLLGRHNVANVLAAVATGVALKAPLASIVAGIEAVEI-PGRSEVIDEGQEFS 287 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 + VD A T +L +L +R + +I VFGC G+ D RP MG +A +D I+T Sbjct: 288 -VVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNEDASIRPRMGAVAHAKSDYVIIT 346 Query: 417 DDNPRSEDPEKIRAEIIHGIPG-------------FIEKG-------------------- 443 ++NPR EDP K+ A+I+ G P F ++G Sbjct: 347 NENPRLEDPAKVVADIVAGFPDDMVNRYSAYAYFPFQDQGRTPLWFEPYLQKAQRDNKRY 406 Query: 444 ---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470 +R AIR AI +DV+++AGKG E Sbjct: 407 VMEDRYSAIRAAIGTAGPEDVVLLAGKGSE 436 >gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 483 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 170/375 (45%), Gaps = 41/375 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW++ ++ VS DSRH++ G +F+ + G DGH ++ A GA A + +S + L + Sbjct: 44 QWKDIEVTSVSFDSRHLERGALFIPLQG-AHDGHQYVETAFTNGAAATLWASDHELTN-- 100 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P+LVV + K L K ++AVTG++GK++ + I Sbjct: 101 ----NGHPVLVVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASIL------ 150 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q+ T T ++F +N + P ++ L+ + T V V G+D+ +LD + Sbjct: 151 STQLNVTKTYANF--NNEIGVP--------VTLLNMEANTEVVV--VEMGMDRFGQLDFL 198 Query: 203 -KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 KL++ T +G HI++ T+ +AKM + L KE ++Y D + + Sbjct: 199 SKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGL--KEDGLLVY--DGDEPLLNE 254 Query: 259 RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNAL 316 RA + G Q ++ V A + ++ V E D F P+ GE+ V NAL Sbjct: 255 RAAKVAQQTSRFGRQLTDDLYATSVTA--GPRSISFKVNEWPDEQFTIPMVGEYNVNNAL 312 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + + I A + L + + R E+ + + G +I D Y + + +LK Sbjct: 313 AAMVVAKRLHISPAHIKTALANVELTENRAEWFKSKN-GAQILSDVYNSNPTAAKQVLKT 371 Query: 376 IRTI-TSGRIIVVFG 389 + + GR I V G Sbjct: 372 LAAMPVQGRRIAVLG 386 >gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase [Listeria monocytogenes FSL F2-208] Length = 115 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 3/92 (3%) Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNR 445 GCGGDRD+GKRP M KIA+D A I T DNPRSE+P I ++I G+P ++ NR Sbjct: 2 GCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHENR 61 Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 +AIR A+ DV+++AGKGHE ++ + Sbjct: 62 RDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD 93 >gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS155] gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella baltica OS155] Length = 460 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 168/370 (45%), Gaps = 43/370 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR I A +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + + +A+TG++GK+SV + I + QI Sbjct: 75 IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A + + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ + +A + Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNHL-QADGTAIINADDAFADFMSVKARPY--KQ 236 Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 LS Q H+ + H + ++ G+ + PL G QV NAL AA Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAAS 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377 +CIA+G++ + E L +L V GR + S+ GR+ +D ++ +N S+ + ++ Sbjct: 297 VCIALGLNLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352 Query: 378 TITSGRIIVV 387 I+ R +V+ Sbjct: 353 EISENRCLVL 362 >gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Oscillochloris trichoides DG6] Length = 493 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 104/451 (23%), Positives = 184/451 (40%), Gaps = 71/451 (15%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L +++Y P Q+ P QW+E E DSR ++ G +FVA+ G + +GH F+P Sbjct: 4 LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63 Query: 63 AIAQGAEAIVVSSA---------------YSLQD--FSATIRSNTP----ILVVDNTRKF 101 IA+GA +VS ++L + A + S TP ++ VD+ Sbjct: 64 VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123 Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSV-----ASFVQQICQRSGLSSFQIGPTSTISSF 156 L A + ++ +TG+ GK+S A Q+ C SF Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCTLKSKRSF----------- 172 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 ++ T P+ + L + V + + + G + D + G TN+G H Sbjct: 173 --NSEATVPTTL-----LQLAPAHEVAVLEMGMWAPGEIRFLADLARPQIGLVTNVGPTH 225 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ++ ++Q+A + AK L EE LP++ A++ ADD M+ NA RV S G Sbjct: 226 LERLKSQEAIWYAKAELVEE-LPRDGWAVLNADDPLVW-AMRDMTNA--RVFSYGLAPHA 281 Query: 277 IHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + + + V +D PL G +Y AL A + + +G++ ++ Sbjct: 282 TLWANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIA 341 Query: 335 HL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387 L +L VV G+ +D + + + + ++ T GR + + Sbjct: 342 GLTDPAAQARLRVVAGQH---------ATTLIDDTYNAAPISTLAALDLLGATPGRRVAI 392 Query: 388 FG----CGGDRDQGKRPIMGKIALDLADIAI 414 G G ++G R + G+ A +AD+ + Sbjct: 393 LGDMLELGSAEEEGHRQV-GQRAAQVADLLV 422 >gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS223] Length = 460 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 166/375 (44%), Gaps = 53/375 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR I A +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P L+V + +K + + + + +A+TG++GK+SV + QI +G Sbjct: 75 IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILSAKHQILYTAGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ RLT+ + + G H + GL + Sbjct: 135 FNNEIGVPLTLL------RLTSADEFGIFEL-------GANHKGEIDYTSGL-------V 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H++ +Q AK +F L + AII ADDA++ + +A Sbjct: 175 RPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP 233 Query: 263 AGCRVLSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNA 315 + LS Q H+ + H + +S G+ + PL G QV NA Sbjct: 234 --YKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNA 291 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMI 372 L AA +CIA+G+ + E L +L V GR + S+ GR+ +D ++ +N S+ Sbjct: 292 LAAASVCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAA 347 Query: 373 LKNIRTITSGRIIVV 387 + ++ I+ R +V+ Sbjct: 348 IAWLKEISENRCLVL 362 >gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS183] gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica BA175] Length = 460 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 43/370 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR I A +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + + +A+TG++GK+SV + I + QI Sbjct: 75 IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A + + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ + +A + Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP--YKQ 236 Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 LS Q H+ + H + ++ G+ + PL G QV NAL AA Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAAS 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377 +CIA+G+ + E L +L V GR + S+ GR+ +D ++ +N S+ + ++ Sbjct: 297 VCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352 Query: 378 TITSGRIIVV 387 I+ R +V+ Sbjct: 353 EISENRCLVL 362 >gi|270700814|ref|ZP_06223056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae HK1212] gi|270315852|gb|EFA27951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae HK1212] Length = 209 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 15/177 (8%) Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P++ + LS A Y +N+ + VTGT+GK++++ + Q + G + Sbjct: 5 NVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAV 64 Query: 147 IGPTSTISS--FAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +G TI + Q + + TT S + + +LS G S+E SSHGL QHR++ + Sbjct: 65 MG---TIGNGLLGQIVEAKNTTGSAVEIQSSLSIFKHAGADFTSIEVSSHGLAQHRVEAL 121 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 A FTNL RDH+DYHQ+ + Y AK RLF EL + A A++K ++ R Sbjct: 122 HFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQ------IAASAFAKMLLTR 172 >gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus aggregans DSM 9485] Length = 487 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 109/456 (23%), Positives = 183/456 (40%), Gaps = 77/456 (16%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L +L+Y P Q+ P W +R+I V DSR + G +FVA+ G + DGHL++ Sbjct: 2 IRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYL 61 Query: 61 PQAIAQGAEAIVVSSA---YSLQDFSATIR-------------SNTP-----ILVVDNTR 99 P + +GA A +VS A D+SA R + P + VD+ Sbjct: 62 PDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPL 121 Query: 100 KFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQI---------CQRSGLSSFQI 147 L +++ R++ ++ +TG+ GK+S V + QRS S + Sbjct: 122 CALQRAAVYHRRMFTP---TVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITL 178 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P + + A ++ A + +L++ H+ G Sbjct: 179 -PATLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHI---------------------G 216 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H++ + +A NAK L E L P + I+ ADD + KR V Sbjct: 217 IVTNVGPSHLERLGSIEAIANAKAELPESL-PPDGWCILNADDPRVAAMAKRTP---AHV 272 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G+ ++ V I + ++T+S +G+ PL G Y L A + Sbjct: 273 VTYGF-APHADVRAVEVISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALV 331 Query: 325 IGIDSALVLEHLEKLHVVPG-RFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSG 382 +G+D + L PG R N + G +D + + L I + T G Sbjct: 332 VGLDWEAIAAGLRD----PGERLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETPG 387 Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAI 414 R I V G G ++G R + G A AD+ + Sbjct: 388 RRIAVLGEMLELGSATEEGHRQV-GAAAARTADLLV 422 >gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella sp. W3-18-1] gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella putrefaciens CN-32] gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. W3-18-1] gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella putrefaciens CN-32] Length = 460 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 41/373 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR + +FVA+ G + DGH F AI GA A++V +L N Sbjct: 24 IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVERELAL---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + + +A+TG++GK+SV + I + +Q+ Sbjct: 75 IPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKYQV-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A Y + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ +VM ++ Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFA-DVMSVKARPYKQL 237 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +G V A +K + ++ G+ D PL G QV NAL AA + Sbjct: 238 HFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNALAAASV 297 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRT 378 CIA+G+ + L +L V GR + S+ GRI +D ++ +N S+ + ++ Sbjct: 298 CIALGLSLTDIAHGLSQLTPVKGRMQ----PSQLGRIRLIDDSYNANPVSVGAAIAWLKE 353 Query: 379 ITSGRIIVVFGCG 391 I+ R +V+ G Sbjct: 354 ISENRCLVLGDLG 366 >gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halothermothrix orenii H 168] Length = 461 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 113/479 (23%), Positives = 201/479 (41%), Gaps = 71/479 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI ++S DSR I G +FVAI+G + DGH FIP+A+++GA A++V +S++ + Sbjct: 25 KITDISIDSRTINPGDMFVAIIGERFDGHSFIPEAVSKGARALIVD--HSIKAYPGV--- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ILV D TR L ++ +TG++GK++ + + + + Sbjct: 80 -GIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGKTTTKDMIASVLKE------KYN 132 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T T + Y L+ LS G ++V + +L I+L+A Sbjct: 133 VTKTRGNLNN----------YYGLPLTLLSLDGDEEIAVLE----MGMSKLGEIELLASI 178 Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G TN+G H++ +T K L E LP AI+ D+ Y +++ + + Sbjct: 179 SKPDIGVITNVGPTHLENLKTVGNVARGKRELIEG-LPTNGLAILNYDNKYVRDM--KDY 235 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEF 310 G +V+ G+ + V A H + + + K+ F+ PG+ Sbjct: 236 VEGKKVIYYGFSPE----ADVYAEH----IKVDEKNKNISFIAHYKTEKERITLQKPGKH 287 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 VYNAL A + + +D + L + + R++ + I Y S++ Sbjct: 288 NVYNALAAIAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITLINDTYNANPLSMK 347 Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPR--SED 424 ++ I R+I V G GD ++ +G+ +A D+ I + R + Sbjct: 348 AAIEATFDIAQERVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGELGRLTARS 407 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG----KGHETVHIVTNGE 479 EK G+ + N EA R ++++ K D ++V G K E V +V++ E Sbjct: 408 AEK------EGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVKMVSSQE 460 >gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 452 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 44/331 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA +V +++ Sbjct: 24 KFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGATGAIVEKGRAVEGIICIEVE 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 NT + + L+ + R + P ++A+TG+SGK++ V + + F + Sbjct: 84 NTLV-----AYQNLARYHRRRF-DIP--VVAITGSSGKTTTKEMVAAVLG----TEFNVL 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T +F + I L K L L+++ V VE GL Q ++ + LIA Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTAEHEACV-VEMGMRGLGQ--IEELALIAEP 178 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K + A Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235 Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + ++ G + G + KK + + T + FD P+ GE VY+AL A Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320 >gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium wasabiae WPP163] gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium wasabiae WPP163] Length = 453 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 157/373 (42%), Gaps = 44/373 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS + + Sbjct: 24 IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKRLHI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L + + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 VPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D P+ L L + + + A+ G + D ++ + Sbjct: 134 -----NFNND----IGVPLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260 NL H++ + AK +F LP + AI+ AD K V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPVDGVAIVNADSNDFPHWQVTLNHKTVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A C + F V + + T+ D L PLPG V NAL A Sbjct: 241 PQAACNI-------DFFA-SDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATA 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +++G V L +L VPGR + + G++ +D ++ +N S+ + + Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAD 350 Query: 379 ITSGRIIVVFGCG 391 + R++VV G Sbjct: 351 MPGYRVMVVGDMG 363 >gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 540 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 175/392 (44%), Gaps = 50/392 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI+ ++ S+++ +F + G++ DGH F +A +GA A++V Sbjct: 36 KISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVEREIP---------- 85 Query: 89 NTPIL--VVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLS 143 + P+L VV+N+R+ LS +++ Y +HP N++ +T T+GK++ + QI + + Sbjct: 86 HIPLLQVVVENSRRALSHLSAKFY-QHPSKSMNMIGITSTNGKTTTTYMIDQILSSNKPT 144 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + +++ LTTP + L + L+ + + + + ++E SS GL+ R+ + Sbjct: 145 GLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCTMEVSSSGLELERVSAVD 204 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 N+ RDHID H + + YF AK RL EE + ++ A+I D + K + Sbjct: 205 YDIAIINNISRDHIDQHGSFENYFAAKQRLVEE-IQEDKRAVINVD---CENACKMINYT 260 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQ- 311 +V++ +G + I N + +S FD + + PG F+ Sbjct: 261 KAKVITYSVKG----IDATIGIDN---LDLSSGSASFDLVINRGFSTLSGKWIKPGRFKI 313 Query: 312 ---------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 VYNA AA + + + L K V RF+ + + +I D+ Sbjct: 314 KLKVLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQLIF--DKKFKIIDDH 371 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 ++E+ ++ + + + +++ G R Sbjct: 372 FANPGNIEVTMETLGKMDFNNLKILYAIRGGR 403 >gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS195] gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella baltica OS678] Length = 460 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 163/368 (44%), Gaps = 39/368 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR I A +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + +A+TG++GK+SV + I + QI Sbjct: 75 IPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A + + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ + +A Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARPYKQLS 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S H+ + H + ++ G+ + PL G QV NAL AA +C Sbjct: 239 FSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNALAAASVC 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTI 379 IA+G+ + E L +L V GR + S+ GR+ +D ++ +N S+ + ++ I Sbjct: 299 IALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLKEI 354 Query: 380 TSGRIIVV 387 + R +V+ Sbjct: 355 SENRCLVL 362 >gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748] Length = 452 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 44/331 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +VS+D+R I++G++FVA+ G+ DGH FI AI +GA +V ++ Sbjct: 24 KFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKGATGAIVEKGRAVDGIVC---- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + VDNT A + ++A+TG+SGK++ V + + F + Sbjct: 80 ----IEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKEMVAAVLG----TEFNVL 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 T +F + I L K L L++ V VE GL Q ++ + LIA Sbjct: 132 KTE--KNFNNE--------IGLPKTLLRLTADHQACV-VEMGMRGLGQ--IEELALIAEP 178 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++A AK L LP+ S AI+ DD Y K + A Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELI-RCLPENSVAILNEDDPYVKAMDSLAKG-- 235 Query: 265 CRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + ++ G + G + KK + + T + FD P+ GE VY+AL A Sbjct: 236 -KTITYGIERNATCIGSHLRYKK-----DGIKFTCKCYDEVFDIFLPMIGEHNVYDALAA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI S + + L + P R E V Sbjct: 290 IVAGRVLGIKSNTIRKGLSEFTGTPMRQEIV 320 >gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella baltica OS185] Length = 460 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 43/370 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR I A +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALMVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + + +A+TG++GK+SV + I + QI Sbjct: 75 IPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQI-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A + + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ + +A + Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFADFMSVKARP--YKQ 236 Query: 268 LSVGYQGKFI--HLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 LS Q H+ + H + ++ G+ + PL G QV NAL AA Sbjct: 237 LSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNALAAAS 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIR 377 +CIA+G+ + E L +L V GR + S+ GR+ +D ++ +N S+ + ++ Sbjct: 297 VCIALGLSLTEIAEGLSQLTPVKGRMQ----PSQLGRVRLIDDSYNANPVSVGAAIAWLK 352 Query: 378 TITSGRIIVV 387 I+ R +V+ Sbjct: 353 EISENRCLVL 362 >gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister microaerophilus UPII 345-E] Length = 460 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 170/388 (43%), Gaps = 35/388 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I+ +F+A+ G + DGH F+ A +GA A+++S + L+ I + + Sbjct: 29 VSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLE----KISEDCTV 84 Query: 93 LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V +T+K A +R+ P ++AVTG++GK++ + + S F + T Sbjct: 85 FLVKDTKKAFEDLAHFNRMRFDIP--VVAVTGSNGKTTTKDMISALLS----SKFNVCST 138 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGS 208 + I L+ L ++ + V VE G Q + + K G Sbjct: 139 EK----------NNNNEIGLSLTLLNITKEHDACV-VEMGMRGFGQIKELCNIAKPTIGV 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI +++ AK L + LP+ A++ DD++ V K N RV+ Sbjct: 188 ITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGDDSF---VKKMGENFKGRVI 243 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G G + ++ +KV + + T + F L G VY+AL A +G+ Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 D + L GR + N G +D A+ +N S+EM L++++ I++ Sbjct: 304 DVTKIQRVLSDFSPRAGRQSLIEIN---GIKIIDDAYNANPLSMEMALRSLKQISAKNKY 360 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413 +V + + + +I L AD+ Sbjct: 361 LVLADMKELGENEEKFHYEIGLKAADMG 388 >gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dialister micraerophilus DSM 19965] Length = 460 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 98/388 (25%), Positives = 170/388 (43%), Gaps = 35/388 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I+ +F+A+ G + DGH F+ A +GA A+++S + L+ I + + Sbjct: 29 VSIDSRTIKENDLFIALKGERFDGHDFVINACKKGASAVIISDSECLE----KISEDCTV 84 Query: 93 LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V +T+K A +R+ P ++AVTG++GK++ + + S F + T Sbjct: 85 FLVKDTKKAFEDLAHFNRMRFDIP--VVAVTGSNGKTTTKDMISVLLS----SKFNVCST 138 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGS 208 + I L+ L ++ + V VE G Q L I K G Sbjct: 139 EK----------NNNNEIGLSLTLLNITKEHDACV-VEMGMRGFGQIEELCNIAKPTIGV 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI +++ AK L + L P+ A++ DD++ V K N RV+ Sbjct: 188 ITNVGTSHIGILGSKENIAKAKGELIQSL-PENGIAVLNGDDSF---VKKMGENFKGRVI 243 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G G + ++ +KV + + T + F L G VY+AL A +G+ Sbjct: 244 YYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTARILGV 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 D + L GR + N G +D A+ +N S+EM L++++ I++ Sbjct: 304 DVTKIQRVLSDFSPRAGRQSLIEIN---GIKIIDDAYNANPLSMEMALRSLKQISAKNKY 360 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413 +V + + + +I L AD+ Sbjct: 361 LVLADMKELGKNEEKFHYEIGLKAADMG 388 >gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Melissococcus plutonius ATCC 35311] Length = 461 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 54/381 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + IN + DSR + +G +F+ + G K DGH FI A +QGA+A + S SL Sbjct: 20 QWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARSQGAKAALWSKESSLAP-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 PIL V +T K + A K ++AVTG++GK++ + + + Sbjct: 77 ----EGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTKDMIAAVLAKKYIT 132 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + QIG TI ++ + + G+ H Sbjct: 133 YKTQGNYNNQIGLPYTILHMPEETEM-------------LVLEMGMDHAD---------- 169 Query: 197 HRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +D + +A + T +G HI+ ++Q AKM + + L+ ++ II ++ Sbjct: 170 -EIDFLSQLASPTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLV-EDGLLIIPENEPL 227 Query: 253 SKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 K + N+ + + G+ + F+ + + K + T + G F P+PG++ Sbjct: 228 LKPL---TANSTQTIKTFGFTNEADFV---ECVQLEEKNKTTFKLSGYQLPFTIPVPGKY 281 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 V NA +A + + + + L ++H+ R E+V N+ G I D Y ++ Sbjct: 282 NVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNRTEWVTANN-GVEILSDVYNANPTAV 340 Query: 370 EMILKNI-RTITSGRIIVVFG 389 ++L + + T+GR IVV G Sbjct: 341 SLVLDSFGQMFTNGRRIVVLG 361 >gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (Meso-diaminopimelate-adding enzyme) [Roseburia intestinalis L1-82] Length = 401 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 169/389 (43%), Gaps = 42/389 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----QDFSAT 85 I ++ S ++ G +FV I G DGH +I A+ GA A+VV + + + F T Sbjct: 23 ITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAGAFAVVVDESCMVNVRWECFIYT 82 Query: 86 ----------IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---AS 131 +R+ ++ V +TR+ L+ ++ Y +P L + G +G A Sbjct: 83 EHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFY-DYPAKKLKIIGITGTKGKTTTAF 141 Query: 132 FVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I + +G + +G T + + TTP L + L+ + S G +E S Sbjct: 142 LTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSDLQRELAQMVSNGCVCCVMEVS 201 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G+ R++GI G F N+ DHI H + Y K RL + I+ Sbjct: 202 SQGIKMQRVEGIFFDIGVFLNIEPDHIGPGEHASFAEYLYCKSRLLRQC----QAGIVNR 257 Query: 249 DDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISV-EGKDF------ 300 DD +++++ H SV G G +K + +++T S+ EG+ + Sbjct: 258 DDRNTEKIL-FGHTCDIETFSVLGENGVDAPGQKADIV--AERITFSMKEGRLYSHFFTD 314 Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +FL +PG F V NAL A + I +V + L++ VPGR E V + + Sbjct: 315 GKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQR-QTVPGRCENVRISDK-FV 372 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV 386 VDYAH SL +L +R GR++V Sbjct: 373 FLVDYAHNEMSLRNLLGTLRGFDPGRLVV 401 >gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium cellulosolvens 6] Length = 465 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 32/358 (8%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L ++ E+ P + ++ E+++DSR + G +FVAI G K DGH FIP Sbjct: 1 MKNLTLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIPG 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + A GA A + A + ++ +++V +T + + A + P +++ + G Sbjct: 61 SFADGALAALAEVAPA--------ETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S V + + + T +F +N + P + + + GV Sbjct: 113 SVGKTSTKEMVAAVLAQ------KYRTLKTEGNF--NNEVGVPLTAFRMREEDEI---GV 161 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + +H + HRL I + FTN+G H+++ ++ AK +F + + ++ Sbjct: 162 LEMGI---NHFGEMHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVF-DFMDEK 217 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVT--ISV 295 I+ DD + H +G QG + H V A H + ++ I Sbjct: 218 GHVIVNGDDD-KLSTISEVHGVAPVRFGIGEQG-YSHPNDVWADGIVSHGLEGISCVIHT 275 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 E F+ + P G +YNAL + + G+ + +E + GRF + +S Sbjct: 276 EAGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIKGDS 333 >gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella australiensis 50-1 BON] Length = 464 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 166/389 (42%), Gaps = 70/389 (17%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +WR IN VS+DSR ++ G +F+A++G + DGH FI A+ GA A+++S Sbjct: 21 KWR--IINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNGASAVMLS--------K 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQI 136 T + PI+ V++T + L A+ ++A+TG+SGK++ F+ + Sbjct: 71 DTADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKEFIYAVLSQKYNV 130 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLD 195 + G + QIG T+ P Y + +S+ G H + A H Sbjct: 131 LKNRGNLNNQIGLPLTVFDI-------NPHHQYAVLEMG-MSALGEIHDLADIARPH--- 179 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 G TN+G HI+ QQ AK+ LF + A++ DD Sbjct: 180 ----------IGVITNIGLSHIEKLGNQQNILRAKLELF-DFFGDNDVAVLNGDDP---- 224 Query: 256 VMKRAHNA-GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQ 311 ++ H+ CRVL +GK I + + N +V +G+ D + G Sbjct: 225 LLCTLHSVLPCRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNIAGFHN 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVD------ 361 VYN+L A + +G+++ + L+ +E L+ P R R +IY D Sbjct: 285 VYNSLAA----VLVGMEANVPLKQIKAGIESLYDTPQRL-------RMFQIYPDIQLIDD 333 Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFG 389 Y +S+ ++ + + S R I V G Sbjct: 334 TYNANPDSMRAAIEVLCDLDSARKIAVLG 362 >gi|153843974|ref|ZP_01993609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] gi|149745274|gb|EDM56525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Vibrio parahaemolyticus AQ3810] Length = 266 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFD 301 A I A+ SK+V++ AH A C SV G+ +TI +G+ + Sbjct: 124 ANIVAESWRSKQVLQLAHRAACTNASVLITGE-------------SGITIRFDGQFGEGT 170 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 PL GEF N ++A +++G D + +L +L V GR E R ++ VD Sbjct: 171 LHAPLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAEHRA-KVVVD 229 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 YAHT ++LE L+ +R G++ +FGCGGDRD GK Sbjct: 230 YAHTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGK 266 >gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 459 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 168/390 (43%), Gaps = 33/390 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +I +D+R ++ ++F+ +VG + DGH FI A ++GA A + S L++ S Sbjct: 26 LKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDFIEDAFSKGALASL--SERKLENVSG 83 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P ++V++T+ L A+ + ++ V G+ GK+S + + + Sbjct: 84 ------PYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGKTSTKEMLSSVLA----TK 133 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 F + T +F +N + P I K V V + S G + HRL I K Sbjct: 134 FNVLKTE--GNF--NNEIGLPLTICRIK-----DEHQVAVVEMGISDFG-EMHRLGDIAK 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G+ H+++ +++ AK +FE + PK I+ DD + + A Sbjct: 184 PDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEHM-PKNGTVILNGDD----DKLINADTL 238 Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + G G+ + + A + I++ G+ F+ LPG V NAL AA + Sbjct: 239 GLNKIFYGLNGQEVSASDIVAEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAAAAVG 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITS 381 +G+ + + + LEK + GR + +D + +N + M + Sbjct: 299 KVLGLSNEEIKKGLEKASTIAGRNNVIEVRD---ITIIDDCYNANPVSMKASIEVLGKAP 355 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 GR I V G G+ +R + +I L D Sbjct: 356 GRTIAVLGDMGELGDDERQLHYEIGQTLED 385 >gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 153/358 (42%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F +A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVARGASGVLVERL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVDNT L+ A+ + +LA+TG++GK+SV + + I +G G Sbjct: 76 VPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILTEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPAGGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 ++ ++ G RVL G Q + +H Q T+ + PLPG Sbjct: 231 MWFEQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQARAVAGR--QIAQTLPNGAVLIDDSYNAN 346 >gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. ANA-3] Length = 460 Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 167/380 (43%), Gaps = 55/380 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +SSDSR I +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERQLAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P L+V + +K + + + + +A+TG++GK+SV + Q+ +G Sbjct: 75 VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134 Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +IG P + + ++D + Y SS HV++ Sbjct: 135 FNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 N+G H++ +Q AK ++ L P + AII ADDA++ +VM R Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGT-AIINADDAFA-DVM-RVK 230 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314 + LS Q G V A +K + ++ G+ + PL G QV N Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371 AL AA +CIA+G+ + E L +L V GR + ++ GR+ +D ++ +N S+ Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGA 346 Query: 372 ILKNIRTITSGRIIVVFGCG 391 + ++ I+ R +V+ G Sbjct: 347 AIAWLKEISENRCLVLGDLG 366 >gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella putrefaciens 200] Length = 460 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 166/373 (44%), Gaps = 41/373 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++SSDSR + +FVA+ G + DGH F AI GA A++V +L N Sbjct: 24 IQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALMVERELAL---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V + +K + + + + +A+TG++GK+SV + I + Q+ Sbjct: 75 IPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEMIATILS----AKHQV-- 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L A Y + G H + GL ++ Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSGL-------VRPNVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H++ +Q AK +F L + AII ADDA++ +VM ++ Sbjct: 180 LVNNVGSAHLEGFGSQAGVAQAKSEIFNH-LQADGTAIINADDAFA-DVMSVKARPYKQL 237 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +G V A +K + + G+ D PL G QV NAL AA + Sbjct: 238 HFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNALAAASV 297 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRT 378 CIA+G+ + L +L V GR + S+ GRI +D ++ +N S+ + ++ Sbjct: 298 CIALGLSLTDIAHGLSQLTPVKGRMQ----PSQLGRIRLIDDSYNANPVSVGAAIAWLKE 353 Query: 379 ITSGRIIVVFGCG 391 I+ R +V+ G Sbjct: 354 ISENRCLVLGDLG 366 >gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis L1-82] gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis XB6B4] Length = 470 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 93/395 (23%), Positives = 169/395 (42%), Gaps = 48/395 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++++I DSR +++G++F+A+ G K DGH FIPQ +GA A++ S Q+ S Sbjct: 24 KKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVL-----SEQELS-- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + V++T + A+ ++ +TG+ GK+S + + + Sbjct: 77 -EPAGPYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQ------ 129 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203 + T +F +N + P I+ + ++ G++ H L + I Sbjct: 130 KYNVLKTEGNF--NNEIGLPLTIFKIREQHEVAVLEMGISEF---GEMHRLAEMAYPDIC 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +I TN+G H++ T+ AK FE L P E A++ DD K K+ N Sbjct: 185 VI----TNIGLCHLENLLTRDGILKAKTESFEHLTP-EGTAVLNGDD--DKLCEKKMVNG 237 Query: 264 GCRV---------LSVGYQG-KFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLP 307 V L+ QG K++ K+V A + + I + + F P+ Sbjct: 238 KPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VYNAL A + +G+ + +E + + GR + +GG +D + +N Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI---HKGGMTIIDDCYNAN 354 Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401 + M ++ GR I V G G+ + ++ + Sbjct: 355 PVSMKASIDVLAAAPGRKIAVLGDMGELGENEQEL 389 >gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 503 Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 151/358 (42%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F +A+A GA ++V L S Sbjct: 24 IDAVGNDTRTLADGSLYVALRGERFDGHDFAAEAVACGASGVLVDRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV+NT L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVNNTELALARIAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAK----------------ALSYLSSQGVTHVSVEASSHG 193 T + ++N + P + A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 ++ ++ G RVL G Q + +H Q T+ + PLPG Sbjct: 231 MWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR--QIAQTLPNGAVLIDDSYNAN 346 >gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium cellulovorans 743B] Length = 395 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 29/362 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89 N VS D+R ++ G I++AI G DG+ F+ +AI +GAE ++ AY+ A + + Sbjct: 27 NLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDKIAYT----EAEVLNK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + I++V+NT+K L A K ++ VTG++GK+S + L F+ Sbjct: 83 SAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSEK-LKVFK--- 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I+ + ++ V + + S Q D + G Sbjct: 139 --TKGNF--NNEIGLPLMIF-----NLDNTYDVAVLEMGMSDLFEIQRLSDVARPDLGVI 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI+ +T++ AKM + KE+ I+ DD Y + K A R++ Sbjct: 190 TNIGISHIENLKTRENILKAKMEI-TTYFGKENLLIVNHDDQYLSTIDK----AEYRLIK 244 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 K I LK + + + + F P+PG+ + NAL+A +G++ Sbjct: 245 ASISDDKNIDLKGESLVLKEDSCEFKL--NESKFYIPMPGKHNISNALLAIACARELGVE 302 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387 L+ + + R + ++G I D Y + +S++ ++ ++ + R I V Sbjct: 303 DQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKGKRRIAV 360 Query: 388 FG 389 G Sbjct: 361 VG 362 >gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 107/414 (25%), Positives = 178/414 (42%), Gaps = 45/414 (10%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P+ R +V +D+R +Q G +FVA+ G + DGH F+ QA+A+GA +VV++ + Sbjct: 20 PVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGAAGVVVAA--REET 77 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 F+A P+ V +T + A + ++AVTG+ GK+S + + + Sbjct: 78 FAAL---PVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTSTRQMIASVLSQK- 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L +Q T +F + I L K L L+++ V VE G Q + Sbjct: 134 LRVWQ-----TEKNFNNE--------IGLPKTLLGLTAEHEACV-VEMGMRGPGQ--IAE 177 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + IA G TN+G+ HI+ +Q+ AK L LP A++ DD + Sbjct: 178 LAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGEL-PAALPATGTAVLNQDDWRVAAMA 236 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----PLPGEFQVY 313 K CR +GY + I + +S + FD F P+ G+ VY Sbjct: 237 KL-----CRGKVIGYGTSVGAAVRAGEIQTDDK-GLSFICRCFDQTFRATVPVLGKHHVY 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM 371 NAL A +G+ + + L VP R E V G +++ A+ +N S+E Sbjct: 291 NALAAVATARLLGLSETQMCKGLAAYAGVPMREELVHV---GPYTFINDAYNANPASMEE 347 Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 ++ + + + I V G GD + ++GK + A++T P S Sbjct: 348 AVQTLAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPAS 401 >gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Peptostreptococcus anaerobius 653-L] Length = 467 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 32/331 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ + DSR +F+AI+G DGH +I A G +VS + D Sbjct: 28 EASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIKSAYDLGCRTFMVSQELDILD----Q 83 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + I+ VDNT + A K ++ +TG+ GK++ V + + F+ Sbjct: 84 LDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITGSVGKTTTRDMVYAVVS----NKFR 139 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + +N+ P I+ + SS + + S G + D ++ Sbjct: 140 ----TLKNEKNLNNQFGVPLTIF-----NLDSSYECAVIEMGMSGFGEIDYLADIVRPDI 190 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 +N+G HI++ +Q+ F AKM + + ++S I+ DD Y ++ Sbjct: 191 AVISNIGTSHIEHLGSQEGIFKAKMEI-SDYFSEDSCLIVNGDDEYLSKLRAEKDAISYS 249 Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCI 323 + S G K I LK + + NK + +E K+ +F P GE VYNA+ A GL + Sbjct: 250 LCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYNAMSAILVGLRL 309 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + ID + G FV T R Sbjct: 310 GMNID-----------EIRQGLMNFVATGDR 329 >gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella oneidensis MR-1] Length = 460 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 53/379 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +SSDSR I +FVA+ G++ DGH F AI GA A++V + + Sbjct: 24 VQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P L+V + +K + + + + +A+TG++GK+SV + Q+ +G Sbjct: 75 IPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ TP Y L G H + GL + Sbjct: 135 FNNEIGVPLTLLRL-------TPEDKYGVFEL------GANHKGEIDYTSGL-------V 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + N+G H++ +Q AK ++ L ++ AII ADDA++ + +A + Sbjct: 175 RPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QEDGTAIINADDAFADVMRVKAKH 233 Query: 263 AGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYNA 315 + LS Q G V A +K + ++ G+ + + PL G QV NA Sbjct: 234 --YKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNA 291 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMI 372 L AA +CIA+G++ + E L +L V GR + ++ GR+ +D ++ +N S+ Sbjct: 292 LAAASVCIALGLNLTEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGAA 347 Query: 373 LKNIRTITSGRIIVVFGCG 391 + ++ I+ R +V+ G Sbjct: 348 IAWLKEISENRCLVLGDLG 366 >gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia bercovieri ATCC 43970] Length = 450 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 155/374 (41%), Gaps = 44/374 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV+ D+R + AG +FVA+ G + DGH F A+ GA A++VS + Sbjct: 20 EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGALLVSK---------RLLV 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L FA+ + + P ++A+TG+SGK+SV I ++ G + G Sbjct: 71 GAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGKVLYTAG 130 Query: 149 PTSTISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +F +N + P +P Y + G HV A + L + Sbjct: 131 ------NF--NNDIGVPLTLLRLTPEYDFAVIEL----GANHVGEIAYTTDLSRPE---- 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + NL H++ + AK +F LP AII AD + HN Sbjct: 175 ---SALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHN 230 Query: 263 AGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV Q + V T+ PLPG + N L AA Sbjct: 231 K--RVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHNIANGLAAA 288 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 L +++G D A V + L +L VPGR + G++ +D + +N S+ + + Sbjct: 289 ALAMSVGADLAAVRQGLMQLQAVPGRLFPI--QLAAGKLLLDDTYNANVGSMTAAAQVLA 346 Query: 378 TITSGRIIVVFGCG 391 + R++VV G Sbjct: 347 EMPGYRVMVVGDMG 360 >gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 472 str. F0295] Length = 825 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 36/358 (10%) Query: 27 ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 E I+ V +DSR + +F A+ N+ DGH +IP+ +G VV + + +A Sbjct: 21 EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGVRCFVVEE---VPERAA 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + N L V +TR+ L A R I+ +TG++GK+ V ++ Q L S Sbjct: 78 ELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVKEWLYQ------LLS 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 Q+ T + S+ ++++ P ++L + S L GV + S G Q D IK Sbjct: 132 PQMVVTRSPRSY--NSQIGVPLSVWLLNSHSQL---GVFEAGI--SQKGEMQALHDIIKP 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263 TN+G H + T + K+RLFE + ++Y ADDA V+ +N Sbjct: 185 TIAVLTNIGSAHEENFSTPEEKCREKLRLFEG-----AEIMVYNADDALVTHVLNETNNG 239 Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALV 317 G + S + + K+ +KQ ++ G+ + P E V N+++ Sbjct: 240 GQHLAWSTKSSDAAMFVTKI----DKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSII 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 A +C+ +G+D+ + E + KL V R E V G + D Y NSL++ L Sbjct: 296 CATVCLHLGLDAHTIGERISKLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIALN 352 >gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium atrosepticum SCRI1043] Length = 453 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 44/373 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS + + Sbjct: 24 IEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK---------RLLVD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L A+ + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 EPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + + A+ G + D ++ + Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260 NL H++ + AK +F LP + AI+ AD K V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPVDGVAIVNADSNDFPHWQVMLNHKTVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A C + F V + T+ + L PLPG V NAL A Sbjct: 241 PQAACDI-------DFFA-SDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATA 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +++G V L +L VPGR + + G++ +D ++ +N S+ + + Sbjct: 293 LAMSVGATLEAVKSGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350 Query: 379 ITSGRIIVVFGCG 391 + R++VV G Sbjct: 351 MPGYRVMVVGDMG 363 >gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 503 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G +++A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVDRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV+NT L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVENTELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYTA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ + G R+L G Q I +++ Q T+ + PLPG Sbjct: 231 MWFEQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfococcus oleovorans Hxd3] Length = 472 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 51/376 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 +S DSR + G +FVAI G + DGH FI + +AQGA +++ A++ R NTP Sbjct: 24 ISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGGVMIDQAHA-------SRINTPR 76 Query: 92 -------ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ++V D L R +P + A+TGT+GK+S +C R Sbjct: 77 ATGRGARVVVKDTVVALGDLARHRRRSVNPR-VAAITGTNGKTSTKEMAAMVCGRR---- 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 +++ +T +F +N + P + L V + + ++ G + RL I + Sbjct: 132 YRV--LATTGNF--NNEIGLPLTL-----LRLEKGHQVAILEMGMNAPG-EIGRLAKICE 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G N+G H++ + AK L E L K++ AI+ ADD VMK A Sbjct: 182 PDMGVVLNVGAGHLEGVENIDGVARAKAELLEALTDKDT-AIVNADDM---RVMKMAQKV 237 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLFPLPGEFQVYNAL 316 RV++ G + K + A ++Q + +S + P G F V NAL Sbjct: 238 RGRVVTYGMRQK----ADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNAL 293 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILK 374 AA + +G+ + + LE VPGR T +R G VD + +N S++ L Sbjct: 294 AAAAIGAGLGLSAPEIKAGLENFSPVPGRMTI--TQTRAGFTLVDDTYNANPESMKAALA 351 Query: 375 NIRTIT-SGRIIVVFG 389 +R + +GR I++ G Sbjct: 352 GLRELKGAGRGILIMG 367 >gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseburia intestinalis M50/1] Length = 470 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 91/395 (23%), Positives = 168/395 (42%), Gaps = 48/395 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++++I DSR +++G++F+A+ G K DGH FIPQ +GA A++ S L D + Sbjct: 24 KKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFEKGALAVL--SEQELSDPAG- 80 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P + V++T + A+ ++ +TG+ GK+S + + + Sbjct: 81 -----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTSTKEMIASVLSQ------ 129 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203 + T +F +N + P I+ + ++ G++ H L + I Sbjct: 130 KYNVLKTEGNF--NNEIGLPLTIFKIREQHEVAVLEMGISEF---GEMHRLAEMAYPDIC 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +I TN+G H++ T+ AK FE L P E A++ DD K K+ N Sbjct: 185 VI----TNIGLCHLENLLTRDGILKAKTESFEHLTP-EGTAVLNGDD--DKLCEKKMVNG 237 Query: 264 GCRVL-SVGYQG---------KFIHLKKVCAIH------NKQQVTISVEGKDFDFLFPLP 307 V +G + K++ K+V A + + I + + F P+ Sbjct: 238 KPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE VYNAL A + +G+ + +E + + GR + +GG +D + +N Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRSNLI---HKGGMTIIDDCYNAN 354 Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401 + M ++ GR I V G G+ + ++ + Sbjct: 355 PVSMKASIDVLAAAPGRKIAVLGDMGELGENEQEL 389 >gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC 35580] Length = 358 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 124/249 (49%), Gaps = 23/249 (9%) Query: 3 LQDLIYKDFPELINQ--LSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 L D+ + + + I Q +SI P+ R + ++ +S DSR ++ G F A+ G DG Sbjct: 10 LADMYVQHYAKSILQCLVSIEPIAVRGADVTVHSLSYDSREVREGAAFFALPGVHTDGSK 69 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 FI A+A+G A+ V L + A I + V + R ++ A+ + + +++ Sbjct: 70 FIDAAVAKG--AVTVIHEKPLPAYQAHIC----YVQVPDVRAAMAAAAAAFFDEPSQDLI 123 Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS------SFAQDNRLTTPSPIYL 170 + VTGT GK+S F+ Q+ + +G + G +ST+S A TTP I + Sbjct: 124 TIGVTGTEGKTSTVDFIWQLLRLAGKKA---GFSSTVSFSLGDEPVANPAHQTTPESITV 180 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 + L+ + G + VEASSHGL RL ++ AG F N+ ++H+++H T + Y Sbjct: 181 QERLARMRDNGCEYAVVEASSHGLSPRTARLLHVRFDAGIFMNVTQEHLEFHGTFEQYRY 240 Query: 229 AKMRLFEEL 237 K LF L Sbjct: 241 DKANLFRAL 249 >gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola sp. JR] gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] Length = 458 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 36/333 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSAT 85 +R +V +DSR I G +FVA+ G + D H F+ QA+ GA ++VS + L D Sbjct: 23 DRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLGAHGVIVSRMQHDLPDGD-- 80 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 IL+VD+T L A K ++AVTG++GK++ + + + L Sbjct: 81 ------ILLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKDMISALLETKYLV-- 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ +F +N + P + L S G V VE GL + +D + I Sbjct: 133 ----LKTLGNF--NNEIGLPLTL-----LGLDESHGA--VVVEMGMRGLGE--IDFLARI 177 Query: 206 ----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 AG TN+G H++ T + AK L +P A++ DD + + K AH Sbjct: 178 ACPTAGVITNIGETHLERLGTVENIARAKTELLPH-IPVGGYAVLNGDDPWQR---KYAH 233 Query: 262 NAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 +V+ G ++ + C + T+ + F P+PG +YNAL A Sbjct: 234 LTRAKVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKVFHLPVPGRHNIYNALAAI 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + G+ + +E L+ + + R + + N Sbjct: 294 TVGLQEGLSWEMCMEGLQNVVLSGMRLQIIDCN 326 >gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus oremlandii OhILAs] Length = 464 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 93/400 (23%), Positives = 171/400 (42%), Gaps = 35/400 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R IQ G +FV ++G K DGH FI +AI GA+A+ V ++ + A ++ Sbjct: 26 IGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQAVFVQEGHNTKTIQAF--ND 83 Query: 90 TPILVVDNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ V +T K L S++ +L+ P + VTG+ GK+S + SG+ S + Sbjct: 84 VWLIEVKDTLKALQAISVYYRKLF---PIPFIGVTGSVGKTSTKDLI------SGVLSGK 134 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +F +N + P ++ + + ++ + + SS G + +D + Sbjct: 135 FNVHKNLGNF--NNEIGLPLTLF-----NLEENHQISVLEMGMSSFGEIRDLVDMVHPEI 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G HI++ +++ AKM + + + ++ DD Y + + K + Sbjct: 188 GVITNIGVSHIEHLGSKEGILKAKMEIASN-FKEGNYLLVNGDDEYLRCIHKDDKDYTVI 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + F + T+ + G+ F G VYNAL A + IG Sbjct: 247 FYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAA----VWIG 302 Query: 327 IDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + E +++ R E + T R I Y + +S++ L + + S Sbjct: 303 LKYHMTFEEIQRGLDGFQPSKMRLEVI-TKGRMKIINDAYNASPDSMKAALDVLDHMKSN 361 Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDD 418 R I V G G ++G R + A DI + + Sbjct: 362 RKIAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGE 401 >gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D [Listeria welshimeri serovar 6b str. SLCC5334] Length = 470 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 157/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++VDNT L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLSNINGDFRQLTFG--------KSEAAEIYPLEIHAEAEGTSFVTNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+K+ R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++ A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV NT L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVKNTELALARIAASMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLCSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ ++ G R++ G Q G I +++ Q T+ + PLPG Sbjct: 231 MWFEQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTPQGEAQVALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 459 Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 29/363 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89 N VS D+R ++ G I++AI G DG+ F+ +AI +GAE ++ AY+ A + + Sbjct: 27 NLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGAELCIIDKIAYT----EAEVLNK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + I++V+NT+K L A K ++ VTG++GK+S + L F+ Sbjct: 83 SAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKDLIAAALSEK-LKVFK--- 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I+ + ++ V + + S Q D + G Sbjct: 139 --TKGNF--NNEIGLPLMIF-----NLDNTYDVAVLEMGMSDLFEIQRLSDVARPDLGVI 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI+ +T++ AKM + KE+ I+ DD Y + K A R++ Sbjct: 190 TNIGISHIENLKTRENILKAKMEI-TTYFGKENLLIVNHDDQYLSTIDK----AEYRLIK 244 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 K I LK + + + + F P+PG+ + NAL+A +G++ Sbjct: 245 ASISDDKNIDLKGESLVLKEDSCEFKL--NESKFYIPMPGKHNISNALLAIACARELGVE 302 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387 L+ + + R + ++G I D Y + +S++ ++ ++ + R I V Sbjct: 303 DQLINKGFLNIEATSMRLDI--EKNKGITIINDTYNASPDSMKAAIEVMKNLKGKRRIAV 360 Query: 388 FGC 390 G Sbjct: 361 VGT 363 >gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Trichodesmium erythraeum IMS101] Length = 468 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 32/293 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++D+R++Q G F+A+ GN DGH F+ +AI +GA ++V Y+L + +N Sbjct: 30 ITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNN 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 PIL V+NT K A + +++VTG+ GK++ + ++ G Sbjct: 90 IPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQG-------- 141 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + + A N + I +AK L LS++ + VE + G + + + IA Sbjct: 142 -KVMKTEANYN-----NEIGVAKTLLQLSNEE-NYAVVEMAMRGPGE--IAELTHIANPT 192 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G HI + +A AK L E + S AI+ D+ E + + Sbjct: 193 IGLITNVGTAHIGRLGSVEAIAEAKCELLRE-MSDSSIAILNYDNQRLIETAAKVWSG-- 249 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G +G + K + TI+VEG D PLPG N L A Sbjct: 250 ETFTYGLEGGNLQGKLI------DSQTINVEG--VDLPLPLPGSHNASNYLAA 294 >gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Ruminococcus obeum A2-162] Length = 456 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 98/448 (21%), Positives = 185/448 (41%), Gaps = 64/448 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R+++ +++DSR I+ +FV IVG + D H FIP +A+GA A + S D+ Sbjct: 25 DREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIPDVMAKGALATLSERELSDADY---- 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + + ++ + + A + ++ +TG+ GK+S + + + + Sbjct: 81 ----PYIQITSSLQAVKDIAEFYLQQLQLPVIGITGSVGKTSTKEVIASVLKE------K 130 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205 T +F +N L P ++ + + + + S G + RL I K Sbjct: 131 YRTLKTQGNF--NNELGLPLTVFRLR-----EDDQIAVLEMGISDFG-EMTRLTRIAKPD 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H++ + AK +F +LP S I+ D ++ H Sbjct: 183 TCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLP--SGHIVLNGDDDKLATVEGYH---- 236 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---------KDFDFLFPLPGEFQVYNAL 316 G + F L ++ Q V+ ++G FD L P PG VYNAL Sbjct: 237 -----GVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNAL 291 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375 AA + G+ + +E L + GRF+ + T + + VD + +N + M + Sbjct: 292 AAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIETEN---FLVVDDCYNANPMSMKASLD 348 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPI-------MGKIALDLA----DIAIVTDDNPRSED 424 + GR + + G G+ + + + K +D+ ++++ + R D Sbjct: 349 VLHDGEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEAARKAD 408 Query: 425 P------EKIRAEIIHGIPGFIEKGNRI 446 P EK R ++ + G++ KG+ I Sbjct: 409 PDFEVHYEKDRESLLKNLGGYVRKGDTI 436 >gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR 15-3] Length = 473 Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 95/428 (22%), Positives = 176/428 (41%), Gaps = 37/428 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D LI+ + F + + +S DSR + G +F I G DGH F A AQGA Sbjct: 6 DKQALISAMDGFTVGCLPEVFSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHAYAQGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ ++ P++VV + + L A + I+A+TG+ GK++ Sbjct: 66 VLVVAQ----NRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q + +G + + P+ LA+ + S G+ + + Sbjct: 122 KEALKQALETAGKVHANLSSLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168 Query: 190 SSHGLDQHRLDGIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +H + L +KL+ T + H+++ + + +AK +FE L K A++ Sbjct: 169 -NHKDEIRPL--VKLVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGL-DKNGIALL 224 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLF 304 ADD + ++K+A G + Q + + K+VC + N + + + KD Sbjct: 225 NADDHFFSYLLKKAKQCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKI 284 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDY 362 PG+ V N L C A+G + A V+ L + + GR + G ++ +D Sbjct: 285 GAPGQHMVQNGLSVLAACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDE 344 Query: 363 AHTSNSLEM-----ILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIA 413 ++ +N M +L GR I + G G ++ R ++ I + AD+ Sbjct: 345 SYNANPASMRAALDLLATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLV 404 Query: 414 IVTDDNPR 421 + R Sbjct: 405 FLVGKEMR 412 >gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis] gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bartonella bacilliformis KC583] Length = 472 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 100/378 (26%), Positives = 169/378 (44%), Gaps = 52/378 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + G IF I N+ DGH F QA+A+GA A+V++ L D + + P+ Sbjct: 29 VSIDSRTLVKGDIFFCI-KNRLDGHDFAAQALARGAGALVIAQ-NRLDDMK---QLSAPL 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV + K L A + I+AVTG+ GK++ ++++ Q G + Sbjct: 84 IVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKTTTKEALKKVLQTVG------KVHAN 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209 I+SF P+ LA+ + S G+ + + +H + L +KL+ Sbjct: 138 IASFNN----CWGVPLTLAQ-MPLDSDYGIFEIGM---NHKDEIRSL--VKLVCPHVALI 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 T++ HI++ + + +AK +FE L + AI+ AD + ++++A ++L Sbjct: 188 THIAAGHIEFFKNLEEIADAKAEIFEG-LDNKGIAILNADSDFFSYLVQKAEQCNVKKIL 246 Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G YQ K++C + N +T+ G+D PG V N+L C Sbjct: 247 SFGESDCADYQA-----KEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVIAAC 301 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIY-VDYAHTSNSLEM-ILKN 375 A+G D + + L + GR GT R G + +D ++ +N + M N Sbjct: 302 DAVGADLSRIAPALSHFSLPQGR----GTRYRLSLPDGEEFHLIDESYNANPVSMRAALN 357 Query: 376 IRTI----TSGRIIVVFG 389 + +I GR I V G Sbjct: 358 LLSIGPVGACGRRIAVLG 375 >gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lactobacillus buchneri NRRL B-30929] Length = 462 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 161/374 (43%), Gaps = 42/374 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + V DSR IQAG +FV +V + DGH +I AIA GA A + +S D + + Sbjct: 25 DESLTGVCFDSRKIQAGQLFVPLVA-EHDGHDYIDNAIAGGASATLWAS-----DHADRL 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ + K ++AVTG++GK++ + I S+F Sbjct: 79 PLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTTTKDMIAAILS----STFN 134 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLI 205 + T T +F +N + P Y Q ++ + G+D+ +LD + + Sbjct: 135 V--TKTQDNF--NNEIGLP----------YTILQMESNTEFLVAEMGMDRPGQLDFLSKL 180 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A T +G HI++ T+ +AKM + L K +Y D + +RA Sbjct: 181 ARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGFFVY--DGDEPLLTERAQ 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVE-GKDFDFLFPLPGEFQVYNALV 317 V+ + K V AI +K Q V + DF P+ G++ V NAL Sbjct: 237 QVDESVIKATFGRK--DSNDVFAIDSKDGQYQTQFHVNLWPEIDFTIPMIGDYNVNNALA 294 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + I ++ + L K + R +++ + S+G RI D Y + + +L Sbjct: 295 AISVGRIFRIHPQMMADKLAKFDLTKNRTQWL-SGSKGERILSDVYNSNPTAAKEVLTAF 353 Query: 377 R-TITSGRIIVVFG 389 + T T GR I V G Sbjct: 354 KNTTTKGRRIAVLG 367 >gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinobacter aquaeolei VT8] gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Marinobacter aquaeolei VT8] Length = 465 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 157/371 (42%), Gaps = 40/371 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + VS+D+R + G +FVA+ G + DGH F+ QA+ QGA A VV + + D + Sbjct: 27 ELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQGAVAAVVDT--EITDVA--- 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVV +T + L+ AS + ++A+TG+SGK++V I Sbjct: 82 ---IPQLVVSDTVQALADLASGNRSESAARLVAITGSSGKTTVREMTGAILA-------G 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +GPT ++ +N + P ++ + + AS G H + + Sbjct: 132 MGPT-LVTEGNLNNHIGVPLTLF-----RLTPDHQFGAIELGASGLGEIAHTVSITRPQV 185 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN G+ H++ + Q AK + + +P + ++ DD + RA R Sbjct: 186 AILTNAGQAHLEGFGSYQNIVLAKGEIIDG-VPADGAVVLNRDDPAFDQWHARAGQR--R 242 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNAL 316 VL V G A ++ + + + +G +F L P LPGE + NAL Sbjct: 243 VLGVSRMG------HPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNAL 296 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A C +G V L ++ V GR + + S I Y S++ L + Sbjct: 297 LALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASDLTLIDDSYNANPASMKAALDVL 356 Query: 377 RTITSGRIIVV 387 + + R+ V+ Sbjct: 357 ASYPAPRLAVL 367 >gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Nitrosomonas europaea ATCC 19718] Length = 452 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 164/368 (44%), Gaps = 32/368 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR ++ G +F+A+ G + DGH FI AI GA +VS+ ++ + + Sbjct: 25 VSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAI----LPTQPDFGW 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +TR L A+ ++ ++AVTG++GK++V + I + Sbjct: 81 IKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFR-------------- 126 Query: 153 ISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 F +N L T + I + + L L S+ V V +H + L +L A + Sbjct: 127 -CEFGLENVLATTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLS--RLAAPT 183 Query: 209 F---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN G HI+Y T +A AK +FE L ++ AII ADD +++ + A N Sbjct: 184 IAVITNAGTAHIEYLGTTEAIARAKGEIFEGL-EEQGVAIINADDPHARLWRQLAGNR-- 240 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V+ G + A + + + + + +PG VYNAL AA A Sbjct: 241 PVVDFSMNGTAAVSARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAATAA 300 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI ++ + E L VPGR + +R I Y +S++ L N+ G+ I Sbjct: 301 GISTSSIAEGLHSFRGVPGRLQKKTGLNRSVLIDDTYNANPDSMQAAL-NVLAEMPGKKI 359 Query: 386 VVFGCGGD 393 ++ G G+ Sbjct: 360 LIIGDMGE 367 >gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC 27678] gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC 27678] gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium dentium Bd1] Length = 515 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 114/426 (26%), Positives = 191/426 (44%), Gaps = 50/426 (11%) Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134 S +DFS + P L+V++ RK LSL ++ YG P+N L V G +G A F Q Sbjct: 81 SERDFSD--HTEVPGLIVNDARKALSLLSAAFYGM-PQNELTVIGITGTKGKTTTAYFTQ 137 Query: 135 QICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVS 186 I L+++ G + SS ++ LTTP + + + + G+ ++ Sbjct: 138 AI-----LNAYSNGRCALFSSVDNCLDGHTYVESELTTPESLDAFRMMREAADNGMRYLV 192 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244 +E SS +R+ G+ G+F N+ DHI H T + Y K +L Sbjct: 193 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAF 248 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGK 298 ++ AD ++ + + A AG + + + + A H+ +I+ G Sbjct: 249 VLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA--FSIAANGH 306 Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFE-FVGTNSR 354 D +F L G+F NAL A L G+ DSA + +E +H VPGR E F GT+ Sbjct: 307 DLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSA-AMHAMESVH-VPGRMELFTGTDGD 364 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 I VDYAH S+ ++ + RI +V G G++ +R + + A D Sbjct: 365 TVAI-VDYAHNYTSVRALIDFVEQRYGERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIA 423 Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQ---DVLVV 464 + T ++ +E I E++ H ++ +R++AI +A+E + DV+++ Sbjct: 424 RFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILI 483 Query: 465 AGKGHE 470 GKGHE Sbjct: 484 IGKGHE 489 >gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum D str. 1873] Length = 455 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 37/369 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87 K N VS+D+R I IF+A+ G+ + + +I +A +GA +V ++ D ++ Sbjct: 25 KYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEASKKGANLCIVDEIKFNEND----LQ 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146 NT +++V NTRK L A K ++ +TG++GK+S + LSS F+ Sbjct: 81 KNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGKTSTKDLTA-----AALSSKFK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLDGIKL 204 + T +F +N + P I+ L V + + S H L + I L Sbjct: 136 VFKTQ--GNF--NNEIGLPLMIF---NLDNTYDIAVLEMGMSDFSEIHRLAKVARPDIAL 188 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 I TN+G HI+ +T++ AKM + + ++S I+ ++ +++K + Sbjct: 189 I----TNIGISHIENLKTRENILKAKMEI-TDFFNEDSILIVNNEN----DLLKDISSDD 239 Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +V+S+G+ +G + N + T+ K+ F P+PG+ + N+L+A Sbjct: 240 YKVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLAIAAGR 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VD--YAHTSNSLEMILKNIRTIT 380 + I+ + E ++ L V R + V +G + VD Y + +S++ + + TIT Sbjct: 300 VLNIEYDKLKEGIKNLSVTSMRLDIV----KGKKFTIVDDCYNASPDSMKAAIDVMNTIT 355 Query: 381 SGRIIVVFG 389 R I V G Sbjct: 356 GKRKIAVLG 364 >gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella tribocorum CIP 105476] Length = 472 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 167/374 (44%), Gaps = 43/374 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + G IF I G+ DGH F QA A+GA ++V+ + L+D + + P+ Sbjct: 29 VSIDSRALAEGDIFFCIKGHHLDGHDFALQAYARGAGVLIVAE-HRLRDME---KISAPL 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV + + L + I+A+TG+ GK++ ++Q+ +G + Sbjct: 85 IVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKTTTKEALKQVLATAG---------NV 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209 ++ A N P+ LA+ + S G+ + + +H + L +KL+ Sbjct: 136 HANLASLNN-CWGVPLTLAR-MPVESDYGIFEIGM---NHKDEIRPL--VKLVCPHVALI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 T++ H+ + + + AK +FE L +E AI+ AD A+ ++++A G ++L Sbjct: 189 THICAGHMGFFKDLEEIAEAKAEIFEG-LDEEGIAILNADSAFFSYLVQKAKQCGVKKIL 247 Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G YQ + I L + N + + + G+D + PG V N+L C Sbjct: 248 SFGETENADYQARDIRL-----LTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVIAAC 302 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM-----ILKN 375 A+G+D ++ L GR + + S GG Y +D ++ +N M +L Sbjct: 303 DAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALELLAT 362 Query: 376 IRTITSGRIIVVFG 389 GR I V G Sbjct: 363 GPVGEKGRRIAVLG 376 >gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC 27755] Length = 465 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/412 (20%), Positives = 164/412 (39%), Gaps = 62/412 (15%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P ++++ V+ DSR ++ ++F+AI G + + H FIP I +GA ++ D Sbjct: 30 PENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIPDTIKKGAMCVISHEDLGETD 89 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-----QQI 136 F + +T ++D + + F ++ G +TG+ GK+S + Q+ Sbjct: 90 FPYILVESTGQALLDTAKLYRDSFDIKVVG--------ITGSVGKTSTKEMIASVLSQKY 141 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGL 194 C L +F +N P I+ ++ GV H Sbjct: 142 CVHKTLGNF-------------NNEWGLPITIFEMNEKHQVAVLEMGVNHFG-------- 180 Query: 195 DQHRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + RL + TN+G H+++ +T++ K ++ +++ S ++ DD Sbjct: 181 EMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGS-ILLNGDDDLL 239 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----------KDFDFL 303 +++ G +F L K C + ++ + G + FD + Sbjct: 240 RDMGPVK----------GVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCI 289 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 PLPG V NAL + +G+ A + +E L +PGR + T+ I +D Sbjct: 290 VPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQTDK---IIILDDC 346 Query: 364 HTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + +N + M ++ + GR + V G G+ + + + + DI I Sbjct: 347 YNANPISMQASLDVLNMAIGRKVAVLGDMGELGETGKELHYETGAHAGDIGI 398 >gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella frigidimarina NCIMB 400] gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 462 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 28/397 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ I VS+DSR+I A +F+A+ G + DGH F+ AI GA A++V F Sbjct: 17 LHGQDGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLVDHLLVDHPF 76 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +A I I+VVD T+K + + + +A+TG++GK+SV + I + Sbjct: 77 AADI---AQIVVVD-TQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEMLATILSQHHQ 132 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 F G +F +N + P + LS GV + A+ G + + Sbjct: 133 VLFTAG------NF--NNEIGVPLTLL---RLSEGDEYGVFELG--ANHRGEIDYTSSLV 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258 N+G H++ + + AK +F L P + AII ADD ++ +++ Sbjct: 180 LPQVALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTP-DGTAIINADDKFADFMLQQSQG 238 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R H R ++V V + + T++ +G+ PL G QV NAL A Sbjct: 239 RKHLRFSREMNV--DADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQVSNALAA 296 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIR 377 A +CIA+ I + + L V GR + + G + +D ++ +N + N Sbjct: 297 ASMCIALDISLYDIAQGFALLKPVKGRMQ---PHDLGRVLLIDDSYNANPTSVSAAINWL 353 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G +V G G+ P+ I L + + AI Sbjct: 354 QQRDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAI 390 >gi|309798583|ref|ZP_07692858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] gi|308117819|gb|EFO55220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] Length = 189 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAH 364 G F NA+ A C+ +G LE ++K VPGR E + T G ++++DYAH Sbjct: 3 GHFNQENAIAAGLACLRLGAS----LEDIKKGIASTRVPGRMEVL-TQKNGAKVFIDYAH 57 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSE 423 +SL+ ++ + T +G+I +V G G++ + +R G + +I + +T D+P E Sbjct: 58 NGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYE 117 Query: 424 DPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKK 481 DP I EI I +EK +R +AI+ A+ + +++ D +++AGKG + I+ ++ Sbjct: 118 DPMAIADEISSYIHHPVEKIADREQAIKAAMSVTDQELDAVIIAGKGADCYQIIQGKKED 177 Query: 482 MSVDCDIIREIL 493 D I L Sbjct: 178 YPGDAAIAERYL 189 >gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-4] Length = 460 Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 164/380 (43%), Gaps = 55/380 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +SSDSR I +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P L+V + +K + + + + +A+TG++GK+SV + Q+ +G Sbjct: 75 VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134 Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +IG P + + +D + Y SS HV++ Sbjct: 135 FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 N+G H++ +Q AK ++ L AII ADDA++ +VM R Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAFA-DVM-RVK 230 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314 + LS Q G V A +K + ++ G+ + PL G QV N Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371 AL AA +CIA+G+ + E L +L V GR + ++ GRI +D ++ +N S+ Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRIRLIDDSYNANPVSVGA 346 Query: 372 ILKNIRTITSGRIIVVFGCG 391 + ++ I+ R +V+ G Sbjct: 347 AIAWLKEISENRCLVLGDLG 366 >gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis] Length = 873 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 143/348 (41%), Gaps = 51/348 (14%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN-LGRDHIDYHQ 221 TTP +++ KAL+ + +G + VE L R D + +TN Sbjct: 459 TTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEAGAEG 518 Query: 222 TQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFI 277 QA + LF + + A+I DD E+ + A AG VL S + I Sbjct: 519 GSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSADSRDADI 578 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 + +K + + +V ++ + PL G V N L A IA G+ ++ +E Sbjct: 579 YAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIVAGIE 638 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 + ++PGR E + + + VD A T L +L ++ S R+++VFGC Sbjct: 639 AVDIIPGRCEII-DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGC------- 690 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------------FIEKGNR 445 P +A D +T+D+P + P + A+++ G+P F++ +R Sbjct: 691 --PGTTSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGTAYPFLQDPHR 748 Query: 446 I------------------------EAIRTAIEMLNKQDVLVVAGKGH 469 + +AIR AI M +DV+VVAGKGH Sbjct: 749 VPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGH 796 >gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella denitrificans OS217] gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella denitrificans OS217] Length = 457 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 156/343 (45%), Gaps = 34/343 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+DSR I A +FVA+ G + D H F AI GA+A++V +L + Sbjct: 24 IANVSTDSRAIPAACLFVALKGERFDAHDFAATAIENGAKALLVERELAL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V N++K + + + +A+TG++GK+SV + I + + G Sbjct: 75 IPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKTSVKEMLASILSQGHQVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F +N + P + + L++A Y GV + A+ G + ++ Sbjct: 134 -----NF--NNEIGVPLTLLRLSQADEY----GVFELG--ANHKGEIDYTSSLVRPRVAL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H++ + + AK +F L + A+I ADDA+ E+MK A + L Sbjct: 181 VNNIGSAHLEGFGSIEGIAEAKSEIFNHL-SADGVAVINADDAFC-ELMKTKAKA-FKQL 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 S + + ++ TI +G+ PL G QV NAL A+ +C+A Sbjct: 238 SFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNALAASAMCLA 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +GI ++ L +L V GR + ++ G + +D ++ +N Sbjct: 298 LGISLTDIVSGLARLAPVKGRMQ---PHTLGRLLVIDDSYNAN 337 >gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium Ellin514] Length = 458 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 45/376 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ V SDSR +Q G +F A+ G + DGH FI + ++G A+V Sbjct: 23 ETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVAERTRMTGKM---- 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++VVDNTR+ L A+R I+AV G++GK+S + + ++ + Sbjct: 79 -PECGVIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELLAGVLKK------R 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + + +SF +N + P+ + L KA + + G H A + Q + Sbjct: 132 LNTLWSEASF--NNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVSMIQPKF----- 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G T++GR+H+++ + + L ELLP + + D ++K++ +R Sbjct: 185 --GIITSIGREHLEFFGDVAGVADEEGWL-AELLPADGKLFLNGDSDWTKQIARRTR--- 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAG 320 V+ VG+ G + A + Q V V+ D + L G Q NA A Sbjct: 239 ATVVRVGF-GAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFA-- 295 Query: 321 LCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LK 374 +A+G + L +HLE+ R + N G +D A+ +N+ M+ L Sbjct: 296 --LAVGAELGLTRDHLEQGLSDCKSAKMRLQLSNWN---GICVIDDAYNANADSMLAALN 350 Query: 375 NIRTITS-GRIIVVFG 389 ++ + GR + V G Sbjct: 351 TLQEMPCVGRRVAVLG 366 >gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halanaerobium sp. 'sapolanicus'] Length = 457 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 48/312 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E KI ++ DSR ++ +F+AI+G DGH FI A+ GA+A++V + D+ Sbjct: 23 EIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVENGAKAVIVDR--QINDY---- 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI-------CQ 138 SN ++ VD+T K L A K + I A+TG+ GK+S + + + Sbjct: 77 -SNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGKTSTKDMIAAVLAQKYKTLK 135 Query: 139 RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 SG + QIG P + + ++D + + L+ ++V Sbjct: 136 TSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLAELARPQIAV---------- 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 TN+G HI+ + + AK L + L K AI+ D+ Y++ Sbjct: 186 -----------ITNVGPAHIEQLGSIENVAAAKKELLDS-LDKSGTAILNYDNEYTR--- 230 Query: 258 KRAHNAGCRVLSVGYQ-GKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 K A N ++++ G+ G + + K N+++ I +GK F PG+ +YN Sbjct: 231 KMAENFNSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYLNKPGKHNIYN 290 Query: 315 ALVAAGLCIAIG 326 AL A IAIG Sbjct: 291 ALAA----IAIG 298 >gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia sp. 5_7_47FAA] Length = 473 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 167/378 (44%), Gaps = 28/378 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS + +AT+ Sbjct: 21 DAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVS-----RPPAATL 75 Query: 87 -RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +N +L V +TR L A+ + P ++AVTG++GK++V + I ++ Sbjct: 76 DMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQA----- 130 Query: 146 QIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202 +G + +++ +N + P ++ A L+ G+ H A + Q + I Sbjct: 131 -VGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMI 189 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RA 260 N R+H ++ + +A + LP + A+ D A E +A Sbjct: 190 N-------NAQREHQEFMVSVEAVAEEHAAVLAA-LPADGVAVYPRDAANGGEFAPVWQA 241 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 RVL G + + V Q++ + G+ F PL G NAL A Sbjct: 242 AAGSRRVLDFGIEAGAV-TGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAATA 300 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +A G+ ++ + L V GR + + GG + D Y +S+ + + T+ Sbjct: 301 CALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALATL 359 Query: 380 TSGRIIVVFGCGGDRDQG 397 + R +V+ G QG Sbjct: 360 PAPRWLVLGDMGEVGSQG 377 >gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 31/372 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSRH+ G +FVA+ G + D H F+PQ + A+V + A + N P Sbjct: 26 VSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVA------EKIPAGL--NVPA 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +TR L AS + ++ VTG++GK++V + I + GP + Sbjct: 78 LIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAA------FGPDNY 131 Query: 153 ISSFAQ-DNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A + + G+ H A + Q + G Sbjct: 132 LATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTV-------GLV 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ ++ +A + LP + A+ ADDA++ + R++ A + L+ Sbjct: 185 NNAQREHQEFMESVEAVAQENGAVLAS-LPADGVAVFPADDAFTP--LWRSYAAQRKTLT 241 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G+ A ++++ + F G V NAL A +AIGI Sbjct: 242 FGFSADADVRCTYAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAP 301 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387 ++ L+ V GR + S G + +D + +N S+ + + + S RI+V+ Sbjct: 302 EAIVRGLQAFAPVSGRLQRKLAAS--GALVIDDTYNANPDSVRAAIDVLAQMASPRILVL 359 Query: 388 FGCGGDRDQGKR 399 G + G++ Sbjct: 360 GDMGEVGNDGRQ 371 >gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chloroflexus aurantiacus J-10-fl] Length = 483 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 109/436 (25%), Positives = 176/436 (40%), Gaps = 63/436 (14%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 +I Q P W +I V +DSR + G +FVA+ G + DGH F+ + +GA A +V Sbjct: 1 MIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALV 60 Query: 74 SS------AYSLQDFS--------------ATIRSNTPILV-VDNTRKFLSLFASRLYGK 112 S A +L + AT+ + +L+ VD+ L A Sbjct: 61 SPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQM 120 Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 ++ +TG+ GK+S V +C R L + + S + ++ +T P A Sbjct: 121 FTPTVIGITGSVGKTSTKEVVAAVCSRR-LRTLK-------SQRSFNSEVTLP-----AT 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 L + V + + + G + + G TN+G H++ + +A NAK Sbjct: 168 LLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAE 227 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQ-- 289 L E L P + I+ ADD V A RVL+ GY + L V + H Sbjct: 228 LPESL-PADGWCILNADD---HRVAAMASRTAARVLTYGYAPNADVRLLDVVS-HGLYGI 282 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE------KLHVVP 343 ++T+ EG+ PL G Y AL A + +G+D + E L +L +VP Sbjct: 283 ELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVP 342 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG----CGGDRDQGK 398 G+ G +D + + L I + T GR I V G G +G Sbjct: 343 GQH---------GTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGAASVEGH 393 Query: 399 RPIMGKIALDLADIAI 414 + + G A +AD+ + Sbjct: 394 QQV-GAAAATMADVLV 408 >gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium dentium ATCC 27679] Length = 515 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 50/426 (11%) Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134 S +DFS + P L+V++ RK LSL ++ YG P+N L V G +G A F Q Sbjct: 81 SERDFSD--HTEVPGLIVNDARKALSLLSAAFYGM-PQNELTVIGITGTKGKTTTAYFTQ 137 Query: 135 QICQRSGLSSFQIGPTSTISS--FAQD------NRLTTPSPIYLAKALSYLSSQGVTHVS 186 I L+++ G + SS D ++LTTP + + + + G+ ++ Sbjct: 138 AI-----LNAYSNGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLV 192 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPA 244 +E SS +R+ G+ G+F N+ DHI H T + Y K +L Sbjct: 193 MEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYLYCK----RQLAYHARAF 248 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGK 298 ++ AD ++ + + A AG + + + + A H+ +I+ G Sbjct: 249 VLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA--FSIAANGH 306 Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFE-FVGTNSR 354 D +F L G+F NAL A L G+ DSA + +E +H VPGR E F GT+ Sbjct: 307 DLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSA-AMHAMESVH-VPGRMELFTGTDGD 364 Query: 355 GGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 I VDYAH S+ ++ + RI +V G G++ +R + + A D Sbjct: 365 TVAI-VDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVEAAQDRIA 423 Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG---NRIEAIRTAIEMLNKQ---DVLVV 464 + T ++ +E I E++ H ++ +R++AI +A+E + DV+++ Sbjct: 424 RFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILI 483 Query: 465 AGKGHE 470 GKGHE Sbjct: 484 IGKGHE 489 >gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402] Length = 303 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 19/226 (8%) Query: 23 MQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 +++ RK+ S D + ++ G F A+ G DG FI AI GA I D Sbjct: 51 VEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDGKKFINSAIENGAVCIFYEG-----D 105 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139 + + V++ RK +S ++ LY + ++ VTGT GKSS SF+ Q+ Sbjct: 106 LNNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRTLGVIGVTGTEGKSSTVSFIFQLLNL 165 Query: 140 SGLSSFQIGPTSTISSFAQDNRL------TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + G ST+ N + TTP + L+ + G + VEASSHG Sbjct: 166 CGKKA---GFFSTVEYSIDGNVIPNPEHQTTPESNIVQLRLAQMRDSGCGYAVVEASSHG 222 Query: 194 LDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 L RL+ + AG F N+ ++H+++H T + Y K LF L Sbjct: 223 LSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYDKANLFRAL 268 >gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella sp. MR-7] Length = 460 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 164/380 (43%), Gaps = 55/380 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +SSDSR I +FVA+ G + DGH F AI GA A++V + + Sbjct: 24 IQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVERELAF---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P L+V + +K + + + + +A+TG++GK+SV + Q+ +G Sbjct: 75 VPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134 Query: 143 SSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +IG P + + +D + Y SS HV++ Sbjct: 135 FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSSLVRPHVAL-------------- 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 N+G H++ +Q AK ++ L AII ADDA++ +VM R Sbjct: 181 -------VNNVGSAHLEGFGSQAGVAQAKSEIYNHL-QSGGTAIINADDAFA-DVM-RVK 230 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQVYN 314 + LS Q G V A +K + ++ G+ + PL G QV N Sbjct: 231 AKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEM 371 AL AA +CIA+G+ + E L +L V GR + ++ GR+ +D ++ +N S+ Sbjct: 291 ALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ----PTQLGRVRLIDDSYNANPVSVGA 346 Query: 372 ILKNIRTITSGRIIVVFGCG 391 + ++ I+ R +V+ G Sbjct: 347 AIAWLKEISENRCLVLGDLG 366 >gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 102/479 (21%), Positives = 198/479 (41%), Gaps = 78/479 (16%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L K+ N + P + ++++ + +DSR +AG +FV I G + D H FI Q Sbjct: 1 MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + + A + + F + ++ I V D +L + G +TG Sbjct: 61 VMEKAVLATLSEKDLGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVG--------ITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + T +F +N L P I+ + + Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNF--NNELGLPLTIFRLR-----DEHEM 159 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + HRL I + TN+G H+++ +++ AK +F+ L + Sbjct: 160 AVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFD-YLQSD 217 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIH------LKKV-CAIHNKQQV 291 I+ DD +++ G + + G +QG + LK + C IH ++ Sbjct: 218 DHIILNGDD---DKLVTVQETKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEE- 273 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 F L P+PG+ VYNAL A + + G+ + + +E L V GRF + Sbjct: 274 -------SFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEA 326 Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI--------- 401 + +D + +N + M ++ T GR + + G G+ +R + Sbjct: 327 PN---YTVIDDCYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAA 383 Query: 402 ---------MGKIALDLADIAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRI 446 +G+++ D+AD A + N +++ D E + E +P +EKG+ + Sbjct: 384 EKEIDVLLCVGELSKDMADAA--GEVNSKTQVRHFADKEALMKE----LPELLEKGDTV 436 >gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia hansenii DSM 20583] Length = 454 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 102/479 (21%), Positives = 198/479 (41%), Gaps = 78/479 (16%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L K+ N + P + ++++ + +DSR +AG +FV I G + D H FI Q Sbjct: 1 MKNLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIEQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + + A + + F + ++ I V D +L + G +TG Sbjct: 61 VMEKAVLATLSEKDLGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVG--------ITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + T +F +N L P I+ + + Sbjct: 113 SVGKTSTKEVIASVLAQ------KYNTLKTQGNF--NNELGLPLTIFRLR-----DEHEM 159 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + HRL I + TN+G H+++ +++ AK +F+ L + Sbjct: 160 AVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFD-YLQSD 217 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG---YQGKFIH------LKKV-CAIHNKQQV 291 I+ DD +++ G + + G +QG + LK + C IH ++ Sbjct: 218 DHIILNGDD---DKLVTVQETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEE- 273 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 F L P+PG+ VYNAL A + + G+ + + +E L V GRF + Sbjct: 274 -------SFSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEA 326 Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI--------- 401 + +D + +N + M ++ T GR + + G G+ +R + Sbjct: 327 PN---YTVIDDCYNANPISMKASLDVLTDALGRKVAILGDMGELGADERKMHKEVGKHAA 383 Query: 402 ---------MGKIALDLADIAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRI 446 +G+++ D+AD A + N +++ D E + E +P +EKG+ + Sbjct: 384 EKEIDVLLCVGELSKDMADAA--GEVNSKTQVRHFADKEALMKE----LPELLEKGDTV 436 >gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella rochalimae ATCC BAA-1498] Length = 472 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 38/374 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D LI+ + F + + VS DSR + AG +F I G+ DGH F A AQGA Sbjct: 6 DKQALISAMDGFTVGCLPEIFSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHAYAQGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ + P++VV + + L A + I+A+TG+ GK++ Sbjct: 66 VLVVAQ----NRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q + G + + P+ LA+ + S G+ + + Sbjct: 122 KEALKQALETVGKVHANLASLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168 Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +H + L +KL+ T + H+++ + + +AK +FE L K A++ Sbjct: 169 -NHKNEIRPL--VKLVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEG-LDKNGIALL 224 Query: 247 YADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ADD + ++K+A G + + S YQ K +HL + C+ + + + KD Sbjct: 225 NADDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVHLLENCSC-----MVVHFDQKD 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358 PG+ V N L C + D A V L + + GR + S GG Sbjct: 280 MMIKIGAPGQHMVQNGLSVLAACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMF 339 Query: 359 Y-VDYAHTSNSLEM 371 + +D ++ +N + M Sbjct: 340 HLIDESYNANPVSM 353 >gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rustigianii DSM 4541] Length = 454 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 40/374 (10%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E + VS+DSR I +F+A+ G + D H F Q + GA A++V + Sbjct: 23 QELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQVVDAGAAALLVDHQLDI------ 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 N P ++VD+TR + A+ + + +++ +TG+SGK+SV I + G + + Sbjct: 77 ---NCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGKTSVKEMTASILVQRGKTLY 133 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +N + P ++ L++ V + + A+ ++ + +K Sbjct: 134 TAGNL--------NNDIGVPLTLF---RLTHDHQFAV--IEMGANHPHEIEYTTNIVKPE 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A NL H++ + + AK +++ LP E AI+ D K K Sbjct: 181 AVLVNNLFGAHLEGFGSPEGVAKAKGEIYQG-LPDEGTAIVNLDSYSDKWQFKPRQTVWR 239 Query: 266 RVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 L+ F I +K++ T+ D PLPG + N L A+ L Sbjct: 240 YSLTQQEHADFYPSNIQVKQLTT-----DFTLHTPVGQVDITLPLPGMHNIANVLAASAL 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMI--LKNIR 377 I++G + + L VPGR V G N ++ +D + +N MI + + Sbjct: 295 SISVGATLEEISQGLASTKAVPGRLYPVRLGDN----KVVIDDTYNANDGSMIAAINVLA 350 Query: 378 TITSGRIIVVFGCG 391 T+ RI+VV G Sbjct: 351 TLPGYRILVVGDMG 364 >gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus CCSD1] Length = 461 Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 41/371 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85 K+ +S+DSR ++ +F+ + G K DG F+ AI +GA A++ + + L+DFS Sbjct: 25 KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V+ T + L AS K +AVTG+SGK++ + QI + + Sbjct: 85 ------VIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-K 203 ++ T +F +N + P I+ + ++ VE +G + RL I K Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIRRLKNIVK 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 FTN+G HI+ +++ AK L E+ +E+ ++ ADD + K Sbjct: 184 PQVAVFTNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LSKIPLQY 239 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + I K C I + + T+ + + + +PG VYN+L A Sbjct: 240 SSKYYRYGIKSGEI---KACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAIC 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 + + GI+ + E L+ PG+ +G +D + +N S++ L +R Sbjct: 297 VGLEFGINVEDMAEALKDFQ--PGKMRL-NIIEKGDIKIIDDVYNANPDSMKAALSVLRD 353 Query: 379 ITSGRIIVVFG 389 + + R I V G Sbjct: 354 LPAKRKIAVLG 364 >gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium novyi NT] Length = 457 Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 168/367 (45%), Gaps = 31/367 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K N +S+D+R I IFVA+ G+ + + +I A +G+ +V +D + + Sbjct: 25 KYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASVKGSNLCIVDEI-KFKD--SDLNE 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 NT I++V+NTRK L A K ++ +TG++GK+S S +++ Sbjct: 82 NTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTSTKDLTAAALS----SKYKVF 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIA 206 T +F +N + P I+ S +S V +E D+ HRL + K Sbjct: 138 KTQ--GNF--NNEVGLPLMIF-----SLDNSYDV--AVLEMGMSNFDEIHRLAKVAKPDI 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G HI+ +T++ AKM + + ++S I+ ++ +++K + + Sbjct: 187 ALITNIGISHIENLKTRENILKAKMEI-TDFFNEDSVLIVNKEN----DLLKTVKSNDYK 241 Query: 267 VLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++S+G++ + + + N + T+ + + F P+PG+ + N+++A + Sbjct: 242 LMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKHNILNSMLAIVAGRTL 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383 GI+ + + ++ L V R + V + G VD Y + +S+ + I TI R Sbjct: 302 GIEYDKLKQGIKNLSVTSMRLDIV---KKDGFTIVDDSYNASPDSMRAAIDVINTIKGNR 358 Query: 384 IIVVFGC 390 I + G Sbjct: 359 KIAILGT 365 >gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 116/456 (25%), Positives = 193/456 (42%), Gaps = 42/456 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR ++ G +FV +VG K DGH FI A GA A + A +D + P+ Sbjct: 28 VSTDSRSLKHGDLFVPLVGAKFDGHDFIKNAFEAGASATL--CAEDKRDRVLNLTLEKPV 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + VD+T+ L A +A+TG+ GK++ + + R +++ Sbjct: 86 IFVDDTQNALLRLAGFYRSFFSIPFVAITGSVGKTTTKEMIAAVLTR----RYRV----- 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 N + I L L L V V + S G + RL I K TN Sbjct: 137 -----LKNEGNFNNEIGLPLTLFRLEDHQVGVVEMGMSGFG-EISRLSAIVKPHVAVITN 190 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G HI+ +++ AK+ + E L K+ ++ AD S E+ + R + G Sbjct: 191 IGVSHIEKLGSRENIARAKLEIIEP-LSKDDLVVLNAD---SPELYAKRGTLTPRTVYFG 246 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + I + ++ + V V G +F PL G VYNAL A IA+G++ Sbjct: 247 IEKGDIRATDIVSM-GRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALAA----IAVGLEF 301 Query: 330 ALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG-RI 384 L ++ + + + + P + + G + +D Y + +S++ L +R + G R Sbjct: 302 GLSIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPDSMKAALNVLRELGEGRRK 361 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 + + G GD +G+ A DI I ++ +ED K E G P FI Sbjct: 362 VAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNH--AEDLAKGATEAGLG-PRFIH 418 Query: 442 K-GNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475 EAI E++ D+++V A +G + IV Sbjct: 419 TFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIV 454 >gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Alicyclobacillus acidocaldarius LAA1] Length = 455 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 54/322 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ D R +Q G FVA VG + DGH F+ +A +GA VV+ +D + Sbjct: 27 ITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVT-----EDVKTAL--- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V N + + A + ++ +TG++GK++ V + LS+ IGP Sbjct: 79 GPCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTTTKEMVAAV-----LSA--IGP 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 +S Q+N L P I L + S+ + + +E GL Q ++ + IA Sbjct: 132 -CVYTSANQNNELGLPLTI-LQRDASHRA------MVLEMGMRGLGQ--IEELCTIARPN 181 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G T++G +HI+ +Q+ AK L L PK+ A++ DD + + + H Sbjct: 182 IGVITHIGYNHIELLGSQENIALAKTELIASL-PKDGMAVLNGDDPWLRRMQ---HRTTA 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316 R+L G + + C I V S EG F+ P L G+ V NAL Sbjct: 238 RILWYG-------MSEGCDIR-ATSVAWSQEGMSFEVDTPHGTATMRIRLLGQHNVMNAL 289 Query: 317 VAAGLCIAIGIDSALVLEHLEK 338 A IA+G L LE +EK Sbjct: 290 AA----IAVGQTLGLSLEDIEK 307 >gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 32/380 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85 + + V++DSR +Q G +FVA++G + D H F+ +A+GA A++VS ++ D Sbjct: 27 DAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDL--- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S +L V +TR L A+ + P ++AVTG++GK++V + + Sbjct: 84 --SGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAVFA------- 134 Query: 146 QIGPTSTISSFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +D RL T + I L L L++Q V +H + L Sbjct: 135 --------CAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLAT 186 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MK 258 I + N R+H ++ + +A + LP + A+ D A E + Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAA-LPADGVAVFPRDAANGGEYAPLW 245 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RA RVL G +G + V + Q V + G F F PL G NAL A Sbjct: 246 RAAAGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAA 304 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 +A GI ++ + L V GR + GG + D Y +S+ + + Sbjct: 305 TACALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALA 363 Query: 378 TITSGRIIVVFGCGGDRDQG 397 T+ + R +V+ G QG Sbjct: 364 TLPAPRWLVLGDMGEVGTQG 383 >gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella novicida FTG] Length = 452 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V N K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N V I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF N + + Y ++ +++ ++++ Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLD 344 Query: 378 TITSGRIIVV 387 R+I + Sbjct: 345 EFDGKRVIAI 354 >gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum BKT015925] Length = 455 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 90/367 (24%), Positives = 170/367 (46%), Gaps = 33/367 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K N VS+D+R I IFVA+ G+ + + +I +A +GA +V ++ ++ Sbjct: 25 KYNSVSTDTRKINENSIFVALKGDNFNANNYIVEASKKGANLCIVDE---IKFNEGDLQE 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 NT +++V+NTRK L A K I+ +TG++GK+S + + + S F++ Sbjct: 82 NTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST----KDLTAAALGSKFKVF 137 Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T +F +N + P I+ L L + G++ S H L + I LI Sbjct: 138 KTQ--GNF--NNEIGLPLMIFNLDNTLDVAVLEMGMSDFS---EIHRLAKVARPDIALI- 189 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G HI+ +T++ AKM + + K+S I+ ++ K++ +N Sbjct: 190 ---TNIGISHIENLKTRENILKAKMEI-TDFFNKDSILIVNNENDLLKDISSNDYN---- 241 Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++++G+ +G + N + T+ ++ F P+PG+ + N+L+A + Sbjct: 242 IINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGKHNILNSLLAIAAGRVL 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAHTSNSLEMILKNIRTITSG 382 I+ + + ++ L V R + V +G + VD Y + +S+ + + TI Sbjct: 302 NIEYDKLKDGIKNLSVTSMRLDIV----KGEKFTIVDDCYNASPDSMRAAIDVMNTIKGK 357 Query: 383 RIIVVFG 389 R I V G Sbjct: 358 RKIAVLG 364 >gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 104/473 (21%), Positives = 200/473 (42%), Gaps = 66/473 (13%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L ++ ++ N + +++I+ +++DSR I+ +FV IVG + D H FIP Sbjct: 1 MKNLTLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIPD 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + +GA A + D+ A I+ + + V + +F + +L + P ++ +TG Sbjct: 61 VMTKGALATLSERELPEADY-AYIQVDASLQAVKDIAEF---YLEQL--QIP--VVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + T +F +N L P ++ + + Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLR-----DEDQI 159 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + RL I K TN+G H++ + AK +F+ + P Sbjct: 160 AVLEMGISDFG-EMARLTKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPN- 217 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKV-CAIHNKQQV 291 ++ DD K + R +N G + + G Q + LK V C IH + Sbjct: 218 GHIVLNGDD--DKLITVREYN-GVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDA 274 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 FD L P PG VYNAL AA + G+ + +E L + GRF+ + T Sbjct: 275 --------FDVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIET 326 Query: 352 NSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + + VD + +N + M ++ GR + + G G+ + + + + + A Sbjct: 327 DK---FLVVDDCYNANPMSMKASLDVLHDGEGRRVAILGDMGELGEDEAALHEGVGIHAA 383 Query: 411 -----------DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRI 446 D+A+ + R +P EK R ++ + +++KG+ I Sbjct: 384 ICGIDACVCVGDLAVHIAEAARKANPDFPVYYEKTRESLLEHLNDYVQKGDTI 436 >gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E980] Length = 450 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV +VG + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis ATCC 367] gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis ATCC 367] Length = 461 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 37/373 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + V+ DSRH+Q G +F+ + G + DGH FI AI GA A + + +D Sbjct: 20 QWGSVSVTSVAFDSRHLQPGGLFIPLTG-EHDGHQFIQSAIDHGAVATLWA-----RDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A+ ++ P++ VD++ K L A K ++AVTG++GK++ + + Sbjct: 73 ASAPADFPVIQVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDMIAAVL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 S Q T T ++F +N + P ++ LS + T + V G+D+ +LD + Sbjct: 127 STQFNVTKTHANF--NNEIGVP--------MTVLSMEPNTEMLV--VEMGMDRPGQLDFL 174 Query: 203 KLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + T +G HI++ T+ +AKM + L + + D+ +E Sbjct: 175 SQLVSPDLALITMIGEAHIEFFGTRDKIADAKMEITHG-LSDDGVFVFNGDEPLLRE--- 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RA R ++ G QG + + + F P+ G + V NAL A Sbjct: 231 RATELTQRQVTFGQQGTDDLFATDVTGTPTTTSFTTNQWPEVTFTIPMIGTYNVNNALAA 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKNI 376 + + I + L + + R E+V T++ G I D ++ + + E++ Sbjct: 291 LSVAMLYRIRPESAKQALATVSLTENRAEWV-TSASGAAILSDVYNSNPTAAKEVLTAFS 349 Query: 377 RTITSGRIIVVFG 389 +T +G+ VV G Sbjct: 350 QTPVTGQRYVVLG 362 >gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12D] Length = 478 Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 26/371 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS + +AT+ Sbjct: 26 DAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVS-----RPPAATL 80 Query: 87 -RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +N +L V +TR L A+ + P ++AVTG++GK++V + I ++ Sbjct: 81 DMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDA 140 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203 ++ +T +F +N + P ++ A L+ G+ H A + Q + I Sbjct: 141 RL---ATAGNF--NNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMIN 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261 N R+H ++ + +A + LP A+ D A E + +A Sbjct: 196 -------NAQREHQEFMVSVEAVAEEHAAVLAA-LPANGVAVYPRDAANGGEYARVWKAA 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RVL G + V + Q++ + G+ F PL G NAL A Sbjct: 248 AGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATAC 306 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 +A G+ ++ + L V GR + + GG + D Y +S+ + + T+ Sbjct: 307 ALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALVTLP 365 Query: 381 SGRIIVVFGCG 391 + R +V+ G Sbjct: 366 APRWLVLGDMG 376 >gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 457 Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 93/379 (24%), Positives = 159/379 (41%), Gaps = 56/379 (14%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 SI +R+ I V D+R I+ G +FV VGN DGH F+ QA GA A Sbjct: 15 SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 68 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 Q ++ P+++V++T L A + + ++A+TG++GK++ + I + Sbjct: 69 WQKNVPNPPTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKDIMAAIVE 128 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + IG TI + +D + + G+ H Sbjct: 129 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 168 Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 +H ++ + IA TN+G HI+Y ++Q AK+ + L P S +IY Sbjct: 169 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 222 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303 Y + ++ + R L+ G + + L+ IH + + T V D + Sbjct: 223 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 275 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362 P+ GE V+N + A IGI+ + L+ + R E++ T G RI D Y Sbjct: 276 VPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNMERSKSRLEWL-TAKNGARILNDAY 334 Query: 363 AHTSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 335 NSSPTALQTVLKTFMHMDS 353 >gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus DSM 2926] Length = 429 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 57/377 (15%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MK+ DL+ FPE I +V DSR ++ G +F AI G G+ + Sbjct: 1 MKIIDLLRDYFPE--------KKILESMDIKDVCMDSREVKKGSLFFAIKG----GNNHV 48 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 +AI GA ++ Y +D I+ I D T F+ A + ++A+ Sbjct: 49 EEAIKNGAVLVI----YDRKDL--LIQDENTIFTED-TVNFMQKLARDYRKSNQTKVVAI 101 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++ + + + F+ T +N + P I L++Q Sbjct: 102 TGSNGKTTTKDIIYSVLSQR----FRTKKTQG----NHNNHIGLPYTI--------LNAQ 145 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V V D +D + IA G TN+G H++Y + ++ F AK L E Sbjct: 146 PEDEVLVLEMGMS-DFGEIDLLCSIALPDYGIITNIGESHLEYLKNKENVFKAKGELLEY 204 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + K + I++ DD Y K++ + VGY G K I N + + Sbjct: 205 VHSKNT--IVFGDDYYLKDI---------HGIKVGY-GDENTFKISEFIENDKGAEFKLA 252 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 GK + P+ GE V NA A L + +G+ + + + L+ + + P RF+ + +G Sbjct: 253 GKTYR--IPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVELTPMRFQKI---EKGK 307 Query: 357 RIYVDYAHTSNSLEMIL 373 ++Y++ A+ +N M L Sbjct: 308 KLYINDAYNANPTSMKL 324 >gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida U112] gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112] gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. novicida FTE] Length = 452 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ N V I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF N + + Y ++ +++ ++++ Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLD 344 Query: 378 TITSGRIIVV 387 R+I + Sbjct: 345 EFDGKRVIAI 354 >gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 465 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 29/237 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S+DSR+I+ +F+A+ G K DGH F+ AI +GA+ ++VS +L+D + I+ Sbjct: 26 KVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDAILKGAKGVIVSRDVNLEDKAFIIK- 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V +T K L A+ ++ +TG+SGK++ + V ++ + G Sbjct: 85 ------VQDTLKALQDIANYYLKTLNAKVIGITGSSGKTTTKNLVGRLLKLIG------- 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 +S +N + P I A+ + V + +E + G + L + IA Sbjct: 132 -KVYVSKENFNNEIGVPLSILEAE-------KDVDFLVLEMAMRGKGEISL--LSKIAEP 181 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G TN+G HI +++A AK +F + + ++ AI+ DD++S ++ +R H Sbjct: 182 DIGVITNIGWAHIGRLGSREAIMEAKAEIF-DYIKEDGIAILNRDDSFSMKIYERLH 237 >gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli] Length = 452 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALTAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia pickettii 12J] Length = 478 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/371 (24%), Positives = 164/371 (44%), Gaps = 26/371 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++VS A +AT+ Sbjct: 26 DAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVLVSRAP-----AATL 80 Query: 87 R-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +N +L V +TR L A+ + P ++AVTG++GK++V + I ++ Sbjct: 81 DVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMISAIFAQAVGEDA 140 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203 ++ +T +F +N + P ++ A L+ G+ H A + Q + I Sbjct: 141 RL---ATAGNF--NNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAAIAQPTVAMIN 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAH 261 N R+H ++ + +A + LP A+ D A E +A Sbjct: 196 -------NAQREHQEFMVSVEAVAEEHAAVLAA-LPANGVAVYPRDAANGGEYAPVWKAA 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RVL G + V + Q++ + G+ F PL G NAL A Sbjct: 248 AGSRRVLDFGMDAGAV-TGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALAATAC 306 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 +A G+ ++ + L V GR + + GG + D Y +S+ + + T+ Sbjct: 307 ALAAGVAPEVIAQALGNFAPVKGRLQR-KQGTHGGLVIDDTYNANPDSMRAAIDALVTLP 365 Query: 381 SGRIIVVFGCG 391 + R +V+ G Sbjct: 366 APRWLVLGDMG 376 >gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506] Length = 505 Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 159/372 (42%), Gaps = 33/372 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G++ DGH F+ A GA VVS + A R Sbjct: 28 ITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRAGAALHVVSE----KRLPALGRMQ 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVVD+ L A + I+AVTG+ GK++ ++Q GLS+ Sbjct: 84 APMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTKEALRQ-----GLSACG-SV 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---A 206 ++++SF +N P+ LA+ L S + + + +H + L +KL+ A Sbjct: 138 HASVASF--NNHWGV--PLSLAR-LPADSRFAIFEIGM---NHPGEIRPL--VKLVRPHA 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-C 265 T + H+ + + +AK +FE ++P S AII ADDA + A AG Sbjct: 188 AIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGS-AIINADDAKCMRLAAAAKAAGVT 246 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL+ G +G + + + + G++ +PG N L G Sbjct: 247 NVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAAHV 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEM-----ILKNIR 377 G D A V E L + + GR E GG I D ++ +N M L N + Sbjct: 307 AGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLANAK 366 Query: 378 TITSGRIIVVFG 389 +GR I V G Sbjct: 367 LSENGRRIAVLG 378 >gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum UW551] gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum IPO1609] Length = 482 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 163/378 (43%), Gaps = 28/378 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85 + I V++DSR +Q G +FVA++G + D H F+ +A+GA A++VS ++ D Sbjct: 27 DAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPAAMLDL--- 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S +L V +TR L A+ + P ++AVTG++GK++V + S + + Sbjct: 84 --SGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMI------SAVFAC 135 Query: 146 QIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202 +G + +++ +N + P ++ A L+ G+ H + L + Sbjct: 136 AVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNH---PGETEVLATIAQPTV 192 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRA 260 LI N R+H ++ + +A + LP + A+ D A E + RA Sbjct: 193 ALI----NNAQREHQEFMVSVEAVATEHAAVLAA-LPADGVAVFPRDAANGGEYAPLWRA 247 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 RVL G +G + V + Q V + G F F PL G NAL A Sbjct: 248 AAGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAATA 306 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +A GI ++ + L V GR + GG + D Y +S+ + + T+ Sbjct: 307 CALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVVDDTYNANPDSVRAAIDALATL 365 Query: 380 TSGRIIVVFGCGGDRDQG 397 + R +V+ G QG Sbjct: 366 PAPRWLVLGDMGEVGTQG 383 >gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Cylindrospermopsis raciborskii CS-505] Length = 451 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 36/302 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R +Q G IF+A+ G K DGH F+ AI +GA A +V Y+ D P+ Sbjct: 33 IQTDTRVLQPGEIFLALGGEKFDGHQFVEMAITRGAVAAIVDYTYNYPDL--------PV 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V NT A G+ ++ VTG+ GK++ + + G T Sbjct: 85 IKVSNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIAAVLGTRGKVH------KT 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210 +F +N + P K L L SQG +E + G Q L I K G T Sbjct: 139 HGNF--NNEIGVP------KTLLEL-SQGDDFAVIEMAMRGRGQIAELTHIAKPNIGVIT 189 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ ++QA AK L E +P +S A++ D+ K+ + V+S Sbjct: 190 NVGTAHIELLGSEQAIAEAKCELLAE-MPNDSVAVLNYDNPLLMATAKQVWSG--EVISY 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G+ G I K V + Q+V + PL G N L A + +G+D Sbjct: 247 GFSGGDIQGKLV----DYQKVEVG----GMTLPLPLAGVHNGSNFLAALAVAKVLGVDWK 298 Query: 331 LV 332 L+ Sbjct: 299 LL 300 >gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL J1-023] Length = 470 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 50/370 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V+NT L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++ + R L+ G + I+ ++ A + E D + P+ GE V Sbjct: 239 ENLLLGNVDGDFRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNV 297 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 +N + A IGI+ + L+ + R E++ T S G RI D Y + +L+ Sbjct: 298 FNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKT 356 Query: 372 ILKNIRTITS 381 +LK + S Sbjct: 357 VLKTFMHMDS 366 >gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella henselae str. Houston-1] Length = 473 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 38/351 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR + G IF I G+ DGH F QA +GA A+++ + L D + + P+ Sbjct: 29 ISIDSRTLIEGDIFFCIKGHHLDGHDFAVQAYERGA-AVLIVAENRLADME---KISAPL 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV + + L A + I+AVTG+ GK++ ++Q+ G Sbjct: 85 IVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKTTTKEVLKQVLATVG--------KVH 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---F 209 +S + +N P + LA+ + S+ GV + + +H + L +KL+ Sbjct: 137 ANSASLNNHWGVP--LTLAR-MPVESNYGVFEIGM---NHKDEIRPL--VKLVHPHVVLI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 T++ H+ + + + +AK +FE L +E A++ ADD + ++++A R+L Sbjct: 189 THISAAHMGFFKNLEEIADAKAEIFEGL-DEEGIAVLNADDDFFPYLVQKAKQCSVKRIL 247 Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G YQ K I L + + + +S+ G+D PG + N+L C Sbjct: 248 SFGETKNSDYQAKDIRL-----LTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVIAAC 302 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM 371 AIG+D VL L GR + + GG Y +D ++ +N M Sbjct: 303 DAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASM 353 >gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814] Length = 456 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/380 (22%), Positives = 157/380 (41%), Gaps = 52/380 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++++ V DSR +Q G++FVAI G + + H FIP + GA +V DF Sbjct: 26 QEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIPDTVKAGAMCVVSHEDLGETDF----- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V++T + L A ++ +TG+ GK+S + + + + + Sbjct: 81 ---PYILVESTGQALLDIAKLYRDSFDMKVVGITGSVGKTSTKEMIASVLAQ----KYHV 133 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ +F +N P I+ + ++ GV H + RL + Sbjct: 134 --HKTLGNF--NNEWGLPITIFDMPEDTEVAVLEMGVNHFG--------EMRRLSSVASP 181 Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H+++ +T++ K ++ +++ S + DD SK + Sbjct: 182 DICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKMSPVK----- 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ---------QVTISV-EGKDFDFLFPLPGEFQVYN 314 G F + CA TI++ +G FD L P+PG V N Sbjct: 237 ------GVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSFDCLVPVPGIHMVSN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ A + +G+ + + +E L +PGR + T+ I +D + +N + M Sbjct: 291 AVAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDH---MIILDDCYNANPISMKAS 347 Query: 375 -NIRTITSGRIIVVFGCGGD 393 ++ + GR + V G G+ Sbjct: 348 IDVLNMAIGRKVAVLGNMGE 367 >gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 503 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 154/358 (43%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++ A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +T L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 K--EVMKRAHNAGCR-VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 E +A A R ++ G Q G I +++ Q T+ + PLPG Sbjct: 231 MWFEQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella piezotolerans WP3] Length = 455 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 38/369 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +VSSDSR + +FVA+ G+ DGH F+ A GA A++V L D A I Sbjct: 24 IEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAENGARAVLVER--ELPDAVAQI--- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VDN+++ + + + K +A+TG++GK+SV V I + Q Sbjct: 79 ----IVDNSQRAMGDIGAYVREKLAPVCVALTGSNGKTSVKEMVATILSQ------QHQV 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P + +A GV + A+ G + +K Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLQAGDQF---GVFELG--ANHAGEIDYTSSLVKPSVAMV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+ H++ + AK +F + + A+I ADDA++ ++ + + + Sbjct: 182 NNVASAHLEGFGSLAGVAKAKSEIFNH-VATDGIAVINADDAFAAVMLAASQHLTQLTFA 240 Query: 270 VGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + K A+H + IS + + PL G QV NAL A+ +C+A+ Sbjct: 241 IDAAADV----KATALHADKGGRYSFDISYADQVESVVLPLAGRHQVLNALAASSICLAL 296 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSN--SLEMILKNIRTITSG 382 G+ + + + L L V GR +R GR+ V D ++ +N S+ + ++ I+ Sbjct: 297 GMSLSFINQGLSLLEPVKGRM----LPTRLGRVTVIDDSYNANPASVGAAIDWLQEISGN 352 Query: 383 RIIVVFGCG 391 R +V+ G Sbjct: 353 RCLVLGDLG 361 >gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa sp. PS] Length = 433 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 149/346 (43%), Gaps = 24/346 (6%) Query: 25 WR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W+ E K S D+R+I+ G ++VA+ G + DGH F+ A +GA AI+V Sbjct: 17 WKGQEIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQKGASAIIVER------- 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSG 141 + + P L V +TRK L A + ++A+TG++GK++ ++ I Q+ Sbjct: 70 --DVVCDLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNGKTTTKEMLKTIFTQKIS 127 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S +I +T + +N + P ++ +A + + + A+ G + Sbjct: 128 AESNEINVLATQGNL--NNDIGVPLTLFNLQA-----NHRYAIIEMGANHAGEIAYLTQM 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 K + T H++ ++ + AK +F L ++ AII DDAY+ + A Sbjct: 181 AKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSH-LTEDGIAIINNDDAYTTLWHELAA 239 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + ++ + K + + + + D PLPG+ + NAL A+ Sbjct: 240 SHQINTFALENTAD-VTAKDIQLNEDSCDFILHTQKSDIAIHLPLPGQHNIMNALTASAC 298 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +A G ++ + L+ + V GR + N G +D + +N Sbjct: 299 ALACGCSLEIIQQGLQNMQPVKGRLQLHKIN---GITLIDDTYNAN 341 >gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548] Length = 453 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 157/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMVTNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N V I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF + + I Y ++ +++ ++++ Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 344 Query: 378 TITSGRIIVV 387 +I+ + Sbjct: 345 EFDGKKILAI 354 >gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 57/359 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++ A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +T L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + IA QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGIA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ----KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +++ + C ++ G Q G I +++ Q T+ + PLPG Sbjct: 231 MWFEQQLQAQPVQGRC-IVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPG 289 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 290 RHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis 62] Length = 457 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 162/376 (43%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 + P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDVPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria marthii FSL S4-120] Length = 470 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 157/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ + R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNIDGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFVTNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ TNS G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTNS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|298525652|ref|ZP_07013061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 94_M4241A] gi|298495446|gb|EFI30740.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Mycobacterium tuberculosis 94_M4241A] Length = 223 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 11/200 (5%) Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L+ + +GV V +E SSH L R+DG + G+FTNL RDH+D+H + YF AK L Sbjct: 5 LAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASL 64 Query: 234 FE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNK 288 F+ + + A++ DD + + RA +A ++V + H + + Sbjct: 65 FDPDSALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWRATDVAPTDAGGQ 120 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q I G LPG + V N LVA + +G+ + L ++ VPGR E Sbjct: 121 QFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQ 179 Query: 349 VGTNSRGGRIYVDYAHTSNS 368 + +G VDYAH S Sbjct: 180 I-DRGQGFLALVDYAHKPES 198 >gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes serotype 4b str. F2365] Length = 457 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A + +D Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 76 PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMNS 353 >gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella clarridgeiae 73] Length = 473 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 38/374 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D LI+ ++ F + +S DSR + G +F I G+ DGH F A AQGA Sbjct: 6 DKQALISAMNGFTVGCLPETFPGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHAYAQGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ + + P++VV + + L A + I+A+TG+ GK++ Sbjct: 66 VLVVAE----NRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q + G + ++SF P+ LA+ + S + + + Sbjct: 122 KEALKQALETVG------KVHANLASFNN----CWGVPLTLAR-MPIDSDYAIFEIGMNH 170 Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 D+ R +KL+ T + H+++ ++ + +AK +FE L K+ A++ Sbjct: 171 K----DEIR-PLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGL-DKDGIALL 224 Query: 247 YADDAYSKEVMKRAHNAGCR-VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ADD + ++++A G + + S G YQ K +V + N + + ++ KD Sbjct: 225 NADDHFFSYLLQKAKQFGVKKIRSFGQSNCADYQAK-----EVRRLENCSCMIVHLDQKD 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358 PG+ V N L C A+G D A V+ L + + GR + S GG Sbjct: 280 VMIKIGAPGQHMVQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTF 339 Query: 359 Y-VDYAHTSNSLEM 371 + +D ++ +N M Sbjct: 340 HLIDESYNANPTSM 353 >gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria innocua Clip11262] Length = 457 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 157/370 (42%), Gaps = 50/370 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V+NT L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++ + R L+ G I+ ++ A + E D + P+ GE V Sbjct: 226 ENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNV 284 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 +N + A IGI+ + L+ + R E++ T S G RI D Y + +L+ Sbjct: 285 FNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKT 343 Query: 372 ILKNIRTITS 381 +LK + S Sbjct: 344 VLKTFMHMDS 353 >gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria ivanovii FSL F6-596] Length = 459 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 54/372 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I+ G +FV VG DGH F+ QA GA A Q Sbjct: 23 FRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQAREMGAVATF------WQKNVP 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A + + ++A+TG++GK++ + I + S Sbjct: 77 NPPTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGSNGKTTTKDIMAAIVETSYKVH 136 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 137 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 172 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY Y Sbjct: 173 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSP--SGILIY---PYE 227 Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEF 310 + ++ + R L+ G Q I+ AIH + + T V D + P+ GE Sbjct: 228 EALLLSHIDGDFRQLTFGKSQEAEIY---PLAIHAEAEGTAFVTNWEPDLEIFVPIIGEH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 V+NA+ IGI+ + + L + R E++ T G RI D Y + +L Sbjct: 285 NVFNAMATMLAAREIGIEGEKIQKALRNMERSKSRLEWL-TTKNGTRILNDAYNSSPTAL 343 Query: 370 EMILKNIRTITS 381 + +LK + S Sbjct: 344 KTVLKTFMHMDS 355 >gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Alcanivorax sp. DG881] Length = 452 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 37/359 (10%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + Q + +Q + K+N V++D+R I+ G +F A+ G + D H F+ A GA A +V Sbjct: 6 VAQWTGGTLQGDDLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVD 65 Query: 75 SAYSLQD-FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 QD F + +R V ++R+ L A + LAVTG +GK++V Sbjct: 66 RE---QDSFESAVR-------VADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMA 115 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + G +T +F +N + P + +A + V + A Sbjct: 116 AAM--------LGDGTLATHGNF--NNDVGVPLTLLRLRAEHRFA---VIELGANAPGEI 162 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 L +++ TN+ H++ + Q +AK +F P AII DD+++ Sbjct: 163 AWTSSLTRPQVVL--VTNVTGAHLEGFGSMQGIADAKAEIFGGCTPG-GQAIINNDDSFA 219 Query: 254 KEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 ++A AG V+ V G ++ + + ++ + + G+ PLPG Sbjct: 220 DFFAEKARAAGLTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAV--TVPLPG 277 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 QV NAL+A A+G++ VL L L VPGR + G VD + +N Sbjct: 278 AHQVSNALMACAAVRALGVNLPQVLPRLAALKPVPGRMHI---QAAGAGAVVDDTYNAN 333 >gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida Fx1] Length = 453 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQDL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPITILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ N V I V +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF N + + Y ++ +++ ++++ Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLA 344 Query: 378 TITSGRIIVV 387 +I+ + Sbjct: 345 EFDGKKILAI 354 >gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 162/366 (44%), Gaps = 39/366 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89 +S+DSR ++ +F+ + G K DG F+ AI +GA A++ + + L+DFS Sbjct: 29 ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAVITARLENVECLKDFS------ 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V+ T + L AS K +AVTG+SGK++ + QI + +++ Sbjct: 83 VDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KYKVLK 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 T +F +N + P I+ + + + V + S G + RL I + Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLEDTHQIAVVEMGMSGFG-EIRRLKNIAEPQVAV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTN+G HI+ +++ AK L E + + DD SK +K + + Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKYS----SKYY 244 Query: 269 SVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAI 325 G + I K C I ++ + +++ KD + +PG VYN+L A + + Sbjct: 245 RYGIKSGEI---KACDIKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAAICVGLEF 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 GI+ + E L+ PG+ +G +D + +N S++ L +R + + R Sbjct: 302 GINVEDMAEALKDFQ--PGKMRL-NIIEKGDMKIIDDVYNANPDSMKAALSVLRDLPAKR 358 Query: 384 IIVVFG 389 I V G Sbjct: 359 KIAVLG 364 >gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes J0161] Length = 457 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-175] Length = 457 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A + +D Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 76 PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMNS 353 >gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium thermocellum ATCC 27405] gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 2360] gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum JW20] gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium thermocellum DSM 1313] Length = 457 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 34/363 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR+I+ G +F+ ++G + DGH +I A+ GA + + F + + Sbjct: 29 ISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALGSLTQK--ETEPFPGKV-----L 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T K L A K + +TG+ GK+S V + + F++ Sbjct: 82 IKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVAAVLSKG----FKV--LKN 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +F +N + P I+ + S V + S G +K TN+ Sbjct: 136 QGNF--NNEIGVPLTIF-----NLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIAIITNI 188 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G HI+ ++ AKM +FE L K AI+ DD + N + +V Y Sbjct: 189 GVSHIEKLGSKNNILKAKMEIFEGLNEK-GLAILNGDDK-----LLYGLNNLLKFRTVFY 242 Query: 273 ---QGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +G + V ++ K I + GK++ P+PG VYNAL + I +GI Sbjct: 243 GMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIELGIP 302 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIV 386 ++E +E+ PG+ N G +I D Y + S+E + ++ I+ GR Sbjct: 303 PEKIVEGIEEFS--PGKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDISGEGRTFA 360 Query: 387 VFG 389 V G Sbjct: 361 VLG 363 >gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Listeria monocytogenes HCC23] gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes L99] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX1330] gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,408] gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com12] gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium PC4.1] Length = 450 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J1-194] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A + +D Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 88 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 89 PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMNS 366 >gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL J2-071] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes EGD-e] Length = 457 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 1/2a F6854] gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes F6900] gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes J2818] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes FSL R2-561] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 503 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 90/359 (25%), Positives = 154/359 (42%), Gaps = 57/359 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++ A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYSALRGERFDGHDFAADAVARGASGLLVERL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +T L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKTSVKALLLSILQEAGRVE---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYAA--------LPADGVAVINADDAFG 230 Query: 254 ----KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 +++ + C ++ G Q G I +++ Q T+ + PLPG Sbjct: 231 IWFEQQLQAQPVQGRC-IVRYGLQIGADITARQLQLQAGAAQFTLVTPQGEAQVALPLPG 289 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 290 RHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis DSM 43017] gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis DSM 43017] Length = 472 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 110/418 (26%), Positives = 154/418 (36%), Gaps = 71/418 (16%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140 S I+ + P LV R L + E + + GT GK+S S + Q Sbjct: 82 STAIKEDNPELVAARERGIPVLHRAEALAALMEGHRVACIAGTHGKTSTTSMLTVALQHC 141 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-------LSYLSSQGVTHVSVEASSH 192 L SF IG S N I++A+A LSY S V Sbjct: 142 RLDPSFAIGGDLNESGA---NAHHGQGGIFVAEADESDGSFLSYSPSVAV---------- 188 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYAD 249 TN+ DH+D+H T AY +F + + + P I+ AD Sbjct: 189 ----------------ITNIEPDHLDHHGTADAYHA----VFHDFVRRIEPGGTLIVCAD 228 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPL 306 D + E+ RA G RVL G +V + V I + G+ + Sbjct: 229 DEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQLRMGVAV 288 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAH 364 PGE +NA+ A + +G D ++E L V RFEF G R G R+Y DYAH Sbjct: 289 PGEHMAFNAVAALLAGLELGADLEGLVEGLAAFGGVRRRFEFKG---RAGDVRVYDDYAH 345 Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + L+ +R GR++VVF AL LAD +V D E Sbjct: 346 HPTEVSAQLRAVRQAAGRGRVVVVFQPHLYSRTRAFAAEFAEALGLADEVVVLDVYGARE 405 Query: 424 DPE----------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 DPE +I+ H P F A+ ++ DV+V G G T Sbjct: 406 DPEPGVTGELVASRIKGANAHYEPAF------DRAVSLVADLAKPGDVVVTMGAGDVT 457 >gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Listeria monocytogenes Finland 1988] Length = 466 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 30 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 83 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 84 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 143 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 144 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 179 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 180 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 234 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 235 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 286 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 287 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 345 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 346 SPTALKTVLKTFMHMDS 362 >gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes LO28] Length = 447 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 11 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 64 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 65 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 124 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 125 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 160 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 161 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 215 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 216 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 267 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 268 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 326 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 327 SPTALKTVLKTFMHMDS 343 >gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N3-165] Length = 470 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium botulinum C str. Eklund] Length = 457 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 172/367 (46%), Gaps = 31/367 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K +S+D+R I IF+A+ G+ + + +I A +GA +V + D + + Sbjct: 25 KYTNISTDTRKITKDSIFIALKGDNFNANDYIVDASDKGANLCIVDEI-NFND--SDLNE 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQI 147 NT I++V+NTRK L A K I+ +TG++GK+S + LSS +++ Sbjct: 82 NTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTSTKDLTA-----AALSSKYKV 136 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206 T +F +N + P I+ S +S V + + S+ + HRL + K Sbjct: 137 FKTQ--GNF--NNEVGLPLMIF-----SLDNSYDVAVLEMGMSNFE-EIHRLAKVAKPDI 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G HI+ +T++ AKM + + K+S I+ ++ +++K + + Sbjct: 187 ALITNIGISHIENLKTRENILKAKMEI-TDFFNKDSILIVNKEN----DLLKNVKSNEYK 241 Query: 267 VLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++S+G++ + + + N + T+ E + F P+PG+ + N+++A ++ Sbjct: 242 LMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHNILNSMLAIVAGRSL 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383 I+ + + ++ L V R + V + G VD Y + +S++ + I TI R Sbjct: 302 DIEYDKLKQGIKNLSVTSMRLDIV---KKDGFTIVDDSYNASPDSMKAAIDVITTIKGNR 358 Query: 384 IIVVFGC 390 I + G Sbjct: 359 KIAILGT 365 >gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella schoenbuchensis R1] Length = 473 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 159/379 (41%), Gaps = 53/379 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91 +S DSR + G IF I GN DGH F QA A+GA +VV+ Q+ A ++ P Sbjct: 29 ISIDSRSLIEGDIFFCIKGNSLDGHDFAAQAYAKGAGVLVVA-----QNRLAEMKMLAAP 83 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++VV + K L A + I+AVTG+ GK++ ++Q G +G + Sbjct: 84 LIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKTTTKEALKQALGTVGRVYANLGSFN 143 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGS 208 P+ LA+ + S G+ + + +H + L +KL+ Sbjct: 144 NCWGV----------PLTLAR-MPADSDYGIFEIGM---NHKDEIRPL--VKLVRPHVAL 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267 T++ HI + + + +AK +FE L E A++ AD + ++++A G ++ Sbjct: 188 ITHIAAGHIGFFKNLEEIADAKAEIFEG-LDDEGVALLNADSHFFSRLVQKAEQCGVKKI 246 Query: 268 LSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 LS G YQ K IHL C+ +T+ +D PG V N L + Sbjct: 247 LSFGESQGANYQAKEIHLLTDCSC-----MTMHFSNQDITVKIGAPGRHIVQNILGVLAV 301 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIY-VDYAHTSNSLEM---- 371 C +G D V L + GR G R GG + +D ++ +N M Sbjct: 302 CDVVGADLTRVSLALNCFSLPKGR----GNRYRLSLPNGGEFHLIDESYNANPASMRAAL 357 Query: 372 -ILKNIRTITSGRIIVVFG 389 +L T GR I + G Sbjct: 358 DLLAAGPVGTRGRKIAILG 376 >gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin opimelate--D-alanyl-D-alanine ligase [Bartonella sp. 1-1C] Length = 472 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 95/397 (23%), Positives = 164/397 (41%), Gaps = 43/397 (10%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D LI+ + F + VS DSR + AG IF I G+ DGH F A AQGA Sbjct: 6 DKQALISAMDGFTIGCLPEIFPGVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHAYAQGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +VV+ + P++VV + + L A + I+A+TG+ GK++ Sbjct: 66 VLVVAQ----NRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q + G + + P+ LA+ + S G+ + + Sbjct: 122 KEALKQALETVGKVHANLASLNNCWGV----------PLTLAR-MPIDSDYGIFEIGM-- 168 Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +H + L +KL+ T + H+++ + + +AK +FE L K A++ Sbjct: 169 -NHKNEIRPL--VKLVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEG-LDKNGIALL 224 Query: 247 YADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 ADD + ++K+A G + + S YQ K + L + C+ + + KD Sbjct: 225 NADDHFFSYLLKKAKQCGVKEIRSFGRSNSADYQVKEVRLLENCSC-----MVVHFYQKD 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRI 358 PG+ V N L C + D A + L + + GR + S GG Sbjct: 280 MMIKIGAPGQHMVQNGLSVLAACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMF 339 Query: 359 Y-VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 + +D ++ +N + M L + + +G I G GG R Sbjct: 340 HLIDESYNANPVSM-LTALDLLATGPI----GVGGKR 371 >gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes 220] Length = 457 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A + +D Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 76 PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Carnobacterium sp. AT7] Length = 462 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 158/376 (42%), Gaps = 40/376 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W +++I V D+R + +FV ++GN DGH FI +AI GA A + S SL+D Sbjct: 22 WSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILKAIENGARASLWSK--SLKDLPF 78 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQIC 137 + ++ P++ V++T K L A K ++ +TG++GK++ V S ++ Sbjct: 79 EVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMTDAVLSSQYRVH 138 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + IG TI D + + G+ H L + Sbjct: 139 KTQGNFNNHIGLPITILEMPIDTEVV-------------ILEMGMNHAGEIKVLSDLAEP 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + I +I G HI++ ++ +AKM + L KE+ +IY ++ +E Sbjct: 186 DVAIITMI-------GESHIEFFGSRAGIADAKMEISSGL--KENGVLIYPGEEPLLQER 236 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + + + L + A N+ T + E D P+ G + V NAL Sbjct: 237 VTFLTDKQLKTFGTAAENDLYPL-NIDAQMNQTSFTTN-ETPDMTISLPVLGTYNVNNAL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD-YAHTSNSLEMILK 374 A I +G+ L K + R E+ VG N G RI D Y +++ +L Sbjct: 295 AALMAGIVLGVPIQKSAPKLAKFQLTKNRTEWLVGIN--GSRILNDAYNANPTAMKAVLD 352 Query: 375 NIRTI-TSGRIIVVFG 389 N T G+ IV+ G Sbjct: 353 NFSTFENEGKKIVILG 368 >gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,501] Length = 450 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 + P++ V + K + A+ K ++A+TG++GK++ + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT-I 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLL 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 10403S] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098] Length = 473 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 38/348 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR G +FV I G + DGH + +A+ QGA A++ +A L+ S Sbjct: 27 VTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQGAVAVL--AARPLEGLS------ 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+L+V +T + L A+ GK ++ +TG++GK++V + + R G Sbjct: 79 VPVLLVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKELLAHVLSRRG-------- 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS-SHGLDQHRLDGI-KLIA 206 + ++ +N++ P L L + G V EA SH D L I + Sbjct: 131 KTACNALNLNNQVGMP--------LCMLKTDGDEDFWVFEAGISHEGDMDELGAILQPDL 182 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+G H + + ++ K RL L P E A++ AD ++++ A Sbjct: 183 ALILNVGAAHTEGLGERGVAWH-KSRLLAHLAP-EGQALVSAD---YDDLVREARAVFGD 237 Query: 267 VLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 VL G+ + + C+ Q + ++G+ D + P G++ N + A Sbjct: 238 VLFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPCDVIAPFRGDYGTENCIAVAAAAH 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +G+ + + + P RF + RG VD + +N L M Sbjct: 298 MLGLTAEEIAAGFADAQLPPQRF---ARSRRGNWDIVDDTYNANPLSM 342 >gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium C68] gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC 6] gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF] Length = 450 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 680 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 98/456 (21%), Positives = 190/456 (41%), Gaps = 72/456 (15%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ PI VV++ + L+ A YG + + +A+TG+ GK++ + V+ + + + + Sbjct: 177 ADVPIAVVEDVDEALADIARVFYGDPSKALTAIALTGSVGKTTTSYLVKAVFEEADI--- 233 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSY------LSSQGVTHVSVEASSHGLDQHRL 199 ++G + ++ D T + AL + ++ G +E S+ + + Sbjct: 234 RMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQLTAGIADNGAQAAVMEVSAEQVRRKAT 293 Query: 200 DGIKLIAGSFTNL--GRDHI-----DYHQTQQAYFNAKMRLFEELLPKESP-AIIYAD-- 249 G+ + T+ G D + DY Y + +F+ L E+ A+I D Sbjct: 294 RGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEYSSHVAEVFKALEDAETQRAVINVDAI 353 Query: 250 ---DAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 D + + H G L+ G ++ +V + V++S + + Sbjct: 354 DDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGADVYPARVDYSLFETAVSLSTPAGNVE 413 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + L GE V A + +A I ++ LE +PGR E V + + VD Sbjct: 414 VVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAGLEATDSIPGRMELVDAG-QDFSVLVD 472 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDD 418 A+T ++ ++ +++ R+I V GC G+ ++G+R ++GK D +D+ VT+D Sbjct: 473 SANTPEAIRSVIDSVKATNCRRVITVIGCEGEMAESERGQRAVIGKTVHDHSDVVFVTND 532 Query: 419 NPRSEDPEKIRAEIIHGI-------PGFIEKG---------------------------- 443 +P++EDP KI +I G PG ++ Sbjct: 533 SPKAEDPYKILEDICAGFRDEIYSKPGMEDEALFPFLKDMYEVHENAQYECMRLQNLVRR 592 Query: 444 ----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 +R AIR AI M + DV+++ G+G + +V Sbjct: 593 YVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDYFVV 628 >gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes HPB2262] gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes str. Scott A] Length = 470 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 158/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A + +D Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVA-----TFWQKDVPN 88 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 89 PPK-DFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|110802290|ref|YP_699487.1| cyanophycin synthetase [Clostridium perfringens SM101] gi|110682791|gb|ABG86161.1| cyanophycin synthase (L-aspartate-adding) [Clostridium perfringens SM101] Length = 874 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 89/405 (21%), Positives = 171/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKNNYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + L+ + + + + GK++ D F + G+ + + NA+ A + Sbjct: 637 LQENLKLENPIVFYRDETIYVKNRGKEYKIASAEDMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L+K GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKKFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +GKI+ D D I I D + R +D ++ + I G+ Sbjct: 755 FKNITGIIGVPGDRDLNTMKEVGKISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1071] gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1636] gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1679] gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1039] Length = 470 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 41 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 93 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 94 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 153 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 154 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 198 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 252 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 253 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 305 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 306 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 364 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 365 TKGRRIAVLA 374 >gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-003] Length = 457 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 55/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G +++A+ G + DGH F A+A+GA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYIALRGERFDGHDFAADAVARGASGLLVGRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV+N L+ A+ + +LA+TG++GK+SV + + I Q +G G Sbjct: 76 VPQVVVENAELALARVAAGMQRDRATRVLALTGSNGKTSVKALLLSILQEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL + +A QT+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERLGSLLGVA--------------QTKGAIYTA--------LPADGVAVINADDAFG 230 Query: 254 ---KEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 ++ + G R+L G I +++ Q T+ + PLP Sbjct: 231 MWFEQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPAR 290 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A GL + GI ++ L + H V GR + G + +D ++ +N Sbjct: 291 HNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR--QIAQTLPSGAVLIDDSYNAN 346 >gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc azollae' 0708] Length = 454 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 129/298 (43%), Gaps = 36/298 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R +Q G +FVA+ G K DGH F+ AI +GA A +V AY F P+ Sbjct: 33 IQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAIAAIVDYAYENPVF--------PV 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +T K + ++ VTG+ GK++ + + G Q+ T Sbjct: 85 LQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTTKELIAAVLATKG----QV--HKT 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210 +F +N + P K L L ++ V +E + G Q L I + G T Sbjct: 139 YGNF--NNEIGVP------KTLLELGAEHDFAV-IEMAMRGRGQIAELTQIARPTIGVIT 189 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ +++A AK L E +P +S AI+ D E K+ +V+S Sbjct: 190 NVGTAHIELLSSEEAIAEAKCELLAE-MPNDSVAILNYDSPLLMETAKKFWQG--KVISY 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G+ G I K I N+ T+ V G PLPG N L A + + ID Sbjct: 247 GFSGGDIQGK---LIDNE---TVEVAG--IGLPLPLPGRHNATNFLAALAVAKVLEID 296 >gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 455 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 50/333 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ D R +Q G FVA VG + DGH F+ +A +GA VV+ +D + Sbjct: 27 VTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVT-----EDVKTAL--- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V N + + A G+ ++ +TG++GK++ V + +GP Sbjct: 79 GPCIRVQNALQAVQALARWERGQFEGPVVGITGSNGKTTTKEMVAAVLG-------ALGP 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 +S Q+N L P I L + S+ + + +E GL Q ++ + IA Sbjct: 132 -CVYTSANQNNELGLPLTI-LQRDASHRA------MVLEMGMRGLGQ--IEELCTIARPN 181 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G T++G +HI+ +Q+ AK L LP + A++ DD + + + H Sbjct: 182 IGVITHIGYNHIELLGSQENIALAKTELIAS-LPNDGIAVLNGDDPWLRRMQ---HRTSA 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNAL 316 R+L G + + C I VT S EG F+ P L G+ V NAL Sbjct: 238 RILWYG-------MGEGCDIR-ATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNAL 289 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 A + +GI + L ++ GR V Sbjct: 290 AAIAVGQTLGISLGDIQIGLGRVEAQRGRLRLV 322 >gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase, putative [Coprothermobacter proteolyticus DSM 5265] Length = 433 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 148/366 (40%), Gaps = 36/366 (9%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 SSD R G IF A G D IP+ + A+ I+ + + ++ Sbjct: 24 SSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKE----------ATGSNVI 72 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + R+ F +P ++L +TGT GKS++A ++ + G T+ Sbjct: 73 YRPDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSL--------LGFGYMGTL 124 Query: 154 SSFAQDNRLTTPSPIYLAKAL-SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 A+D + P+ A AL + G H VE SS GL + RL + L +T Sbjct: 125 GIRAKDVKFVLPTTTTGADALFNTYRRTGEDHWVVELSSIGLAEDRLP-LPLEGLVWTTF 183 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 +H+DYH+T AYF AK + F L K + A++ + V + L G Sbjct: 184 EPEHMDYHKTTYAYFLAKKKAF-SYLKKGTFALL------GQNVPQADIGTPYLTLRYGD 236 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 G F L + +Q+V I P+PG+ ++A+ G A + Sbjct: 237 TGNFYILDR-REYEWEQEVKIYTPQGPSVVHIPMPGKVFAHDAV---GTVAAAFLWKGTK 292 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 LE + VP R V N G + +D+AHT S++ L+ + +V+ G G Sbjct: 293 LEG--EFPSVPVRMNHVIIN--GIEMVIDFAHTPESIDACLQTVAQRWGNDFVVIHGATG 348 Query: 393 DRDQGK 398 Q K Sbjct: 349 YEPQNK 354 >gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfotomaculum reducens MI-1] gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfotomaculum reducens MI-1] Length = 457 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 37/368 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI + +DSR + +FVA+ G + DGH F +AI QGA A++VS + I Sbjct: 25 KIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQGASALLVSREIT------GIAP 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++V NT + L AS + ++AVTG++GK+S + + + F+ Sbjct: 79 QIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKDMIAAVLN----TRFKT- 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAK---ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T +F + L + A+ + +G + L G+ Sbjct: 134 -LKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDF-----------LAGLAKP 181 Query: 206 AGS-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G+ TN+G H++ + + AK + + ++ AI+ AD Y E+ A N Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHI-GRDGFAILNADSPYLGEL---ARNCQ 237 Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +V +G + + + IS G + P+PG V N+L A G+ + Sbjct: 238 GKVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVGL 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITS 381 +G+ + + L +L + R + + +N GR+ ++ + +N S + LK ++ Sbjct: 298 QLGLQLEEIAQGLAQLCLTHSRLQILSSN---GRVIINDTYNANPSSTKAALKVLKETAR 354 Query: 382 GRIIVVFG 389 R I V G Sbjct: 355 SRKIAVLG 362 >gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria monocytogenes str. 4b H7858] gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL N1-017] Length = 470 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 349 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 350 SPTALKTVLKTFMHMDS 366 >gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria monocytogenes FSL R2-503] Length = 447 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 11 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 64 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 65 NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 124 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 125 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 160 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 161 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 215 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 216 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 267 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 268 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 326 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 327 SPTALKTVLKTFMHMDS 343 >gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella halifaxensis HAW-EB4] Length = 459 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 80/388 (20%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VSSDSR + + +FVA+ G DGH F A+ GA A++V + N Sbjct: 24 IDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAAVDAGANALLVERELPI---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 L+V+N++K + + + + +A+TG++GK+SV + Q+ +G Sbjct: 75 ATQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNGKTSVKEMIATILSQKHQVLYTAGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ Q + GV + A+ G + + Sbjct: 135 FNNEIGVPLTLLRLQQGDEF------------------GVFELG--ANHAGEIDYTSSLV 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K N+ H++ + + AK +F + A+I ADDA++ +VM +A + Sbjct: 175 KPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNH-ISTGGTAVINADDAFA-DVMLQASS 232 Query: 263 AGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKD----------FDFLF------- 304 H+K++C + N+ + V D F + Sbjct: 233 ---------------HVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRV 277 Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-D 361 PL G QV NAL A +CIA+G+ L+ + L L V GR S+ GR+ V D Sbjct: 278 ELPLAGRHQVSNALAATSICIALGLSLPLICQGLSLLQPVKGRM----LPSQLGRVTVID 333 Query: 362 YAHTSN--SLEMILKNIRTITSGRIIVV 387 ++ +N S+ + ++ I R +V+ Sbjct: 334 DSYNANPASVGAAIDWLQEIKGNRCLVL 361 >gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia solanacearum GMI1000] gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Ralstonia solanacearum GMI1000] Length = 482 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 94/375 (25%), Positives = 159/375 (42%), Gaps = 22/375 (5%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSAT 85 + I V++DSR + G +FVA++G + D H F+P +A+GA A++VS + D S Sbjct: 27 DAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRPPVGIPDLSGV 86 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V +TR L A+ + P ++AVTG++GK++V + S + + Sbjct: 87 A-----VLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMI------SAVFAC 135 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 +G + +++ N + I L L L++Q V +H + L I + Sbjct: 136 AVGEAARLATAGNLN-----NDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAIAQP 190 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHN 262 N R+H ++ A+ LP + A+ D A E + RA Sbjct: 191 TVALINNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRAAA 249 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RVL G +G + V + Q++ + G F F PL G NAL A Sbjct: 250 GTRRVLDFGIEGGAVS-AAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAATACA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A GI ++ + L V GR + + G I Y +S+ + + T+ + Sbjct: 309 LAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATLPAP 368 Query: 383 RIIVVFGCGGDRDQG 397 R +V+ G QG Sbjct: 369 RWLVLGDMGEVGTQG 383 >gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes Clip81459] gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 457 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 64/377 (16%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 21 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATF------WQKDVP 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 + P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 75 NPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 134 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 135 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 170 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 171 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 225 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 226 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNS 336 Query: 365 TSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 337 SPTALKTVLKTFMHMDS 353 >gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Francisella cf. novicida 3523] Length = 453 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 155/370 (41%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAI+ N+ DGH FIP AIA GA+A++VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIIANR-DGHEFIPSAIANGAKAVLVSKKQDL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK++V + + L S ++ Sbjct: 73 IPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTL-----LGSKKV-- 125 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 126 -----HFTQGNFNN-----YLGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSKEVM 257 TN+G H++ +T K L + LPK+ I+ YAD K++ Sbjct: 176 AMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGFCIVNLDDERIPAYADKLDCKKIT 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + YQ V I + K++ + P G+ + N+++ Sbjct: 235 CSMSNQDADILILDYQ----------VTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSML 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A G + L++ + + GRF N + + Y ++ +++ ++++ Sbjct: 285 AIASVVAAGFEPNSFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLA 344 Query: 378 TITSGRIIVV 387 R+I + Sbjct: 345 EFDGKRVIAI 354 >gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum 28-3-CHN] Length = 459 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + ++ V+ DSR+++AG +FV + G ++DGH ++ +A GA+A + + +D Sbjct: 20 QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P LVVD+ + L K ++AVTG++GK++ V I Sbjct: 74 YDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL------ 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197 + Q+ T ++F +N + P VT +++EA++ G+D+ Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169 Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +LD + + T +G HI++ ++ +AKM + L E +Y D Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311 + +RA + + G Q L + V+ +V + D F PL GE+ Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 V NAL A + + + A + + L+ + + R E+V + G RI D Y +++ Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343 Query: 371 MILKNIRTI-TSGRIIVVFG 389 +L + TI +G+ + V G Sbjct: 344 EVLATLATIPVAGKRVAVLG 363 >gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces maris DSM 8797] Length = 470 Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 147/334 (44%), Gaps = 29/334 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++I + + P+Q ++ +S DSR + +F AI G + DGH F+ QA+ +GA A V Sbjct: 11 QVIQRGATNPLQ-ELAEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGAAACV 69 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V T + +L VD+ L FA + ++ VTG+ GK++ S Sbjct: 70 VKRG------EVTDPGSQLLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSM 123 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + + LSS G S ++F +N P I + + S V A+SH Sbjct: 124 I-----YTALSSCLTGIQSP-ANF--NNEFGVPLSI------AGIESSHQFAVLELAASH 169 Query: 193 GLDQHRLDGIKLIA-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + L I L G T +G H+++ T Q K LFE+ LP AI+ DD Sbjct: 170 VGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQIAETKGELFEQ-LPATGLAIVCGDDP 228 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++ + R R + +G G+ L+ V ++Q ++ V G+ +L P+ G Sbjct: 229 FADCLASRTT---ARKVRIGL-GENNDLQAVSIEQDQQGISFRVNGQ--QYLLPVVGRHF 282 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 V AL A + +GI V E L VPGR Sbjct: 283 VNAALAAIAVARELGISEQDVAESLRNYSTVPGR 316 >gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus faecalis E1Sol] Length = 457 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENFGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,141,733] Length = 450 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ +D+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPSDEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella loihica PV-4] gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella loihica PV-4] Length = 456 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 168/379 (44%), Gaps = 57/379 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++VSSDSR + A +FVA+ G + D H F +A+ GA A++V + Sbjct: 24 VSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGASALLVERELPIA--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V N++K + + + +A+TG++GK+SV V I S Q Sbjct: 75 APQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVATIL------STQHQV 128 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L Y + G H+ + L Q + + Sbjct: 129 LYTAGNF--NNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSSLVQPDVAMV----- 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + + AK +F L K+ A+I ADDA++ +VM+RA + + Sbjct: 182 --NNVASAHLEGFGSLEGVAKAKSEIFLH-LAKDGVAVINADDAFA-DVMRRAAASHTQ- 236 Query: 268 LSVGYQGK------------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 LS QG + + + +Q T+S PL G QV NA Sbjct: 237 LSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVS---------LPLSGRHQVSNA 287 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMI 372 L A +C+A+G+ +++ L +L V GR + +R GR + +D + +N S+ Sbjct: 288 LAATSICLALGLSLDEIVQGLMRLQPVKGRMQ----PTRLGRFLLIDDTYNANPASVGAA 343 Query: 373 LKNIRTITSGRIIVVFGCG 391 + ++ I R +V+ G Sbjct: 344 IDWLQEIEGNRCLVLGDLG 362 >gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus fermentum IFO 3956] Length = 459 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + ++ V+ DSR+++AG +FV + G ++DGH ++ +A GA+A + + +D Sbjct: 20 QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P LVVD+ + L K ++AVTG++GK++ V I Sbjct: 74 YDPADGYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTKDMVASIL------ 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197 + Q+ T ++F +N + P VT +++EA++ G+D+ Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169 Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +LD + + T +G HI++ ++ +AKM + L E +Y D Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311 + +RA + + G Q L + V+ +V + D F PL GE+ Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 V NAL A + + + A + + L+ + + R E+V + G RI D Y +++ Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343 Query: 371 MILKNIRTI-TSGRIIVVFG 389 +L + TI +G+ + V G Sbjct: 344 EVLATLATIPVAGKRVAVLG 363 >gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum CECT 5716] Length = 459 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 169/380 (44%), Gaps = 50/380 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W + ++ V+ DSR+++AG +FV + G ++DGH ++ +A GA+A + + +D Sbjct: 20 KWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P LVVD+ K L K ++AVTG++GK++ V I Sbjct: 74 YDPADGYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL------ 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQH 197 + Q+ T ++F +N + P VT +++EA++ G+D+ Sbjct: 128 ATQMNVIKTYANF--NNEIGVP----------------VTLLNMEANTEAVVVEMGMDRF 169 Query: 198 -RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +LD + + T +G HI++ ++ +AKM + L E +Y D Sbjct: 170 GQLDLLSRLTTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGL--AEDGTFVY--DGD 225 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQ 311 + +RA + + G Q L + V+ +V + D F PL GE+ Sbjct: 226 EPLLRERAAKLSQQTKTFGRQLD-DDLYATSVNPDVDHVSFTVNQWPDEVFTIPLVGEYN 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 V NAL A + + + A + + L+ + + R E+V + G RI D Y +++ Sbjct: 285 VNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVA-GANGERILSDVYNSNPTAVK 343 Query: 371 MILKNIRTI-TSGRIIVVFG 389 +L + TI +G+ + V G Sbjct: 344 EVLATLATIPVAGKRVAVLG 363 >gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia denticolens DSM 10105] gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia denticolens DSM 10105] Length = 549 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 121/474 (25%), Positives = 209/474 (44%), Gaps = 76/474 (16%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TS 124 A+A+ + + +DFS+ ++ ++V + R+ L+L ++ YG P + L V G T Sbjct: 86 ADALGLPCYVAQEDFSSATKALG--IIVTDVRQALALLSAAFYGD-PASQLKVVGITGTK 142 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALS 175 GK++ A F I LS++ G + +SS F + N LTTP + L + + Sbjct: 143 GKTTTAYFTHAI-----LSAYSGGKAALLSSVDNCVDGTTFTESN-LTTPESLDLYRMMR 196 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 G+ ++ +E SS R+ G+++ G+F N+ DHI H T + YF K Sbjct: 197 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCK--- 253 Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV--GYQGKFIH----------L 279 ++ ++ A A++ V + RAH AG + G G H L Sbjct: 254 -RQIAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 312 Query: 280 KKVCAIHNKQQVTISV---EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDS----- 329 V A T+ +G+ F DF + G+F NA A + ++G+D Sbjct: 313 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 372 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIV 386 A LE +EK+ + GR E ++ +G VDYAH S +L + RII+ Sbjct: 373 AQALEAMEKV-TISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIIL 430 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---------RAEIIHGIP 437 V G G++ +R + + A D I T+++ +E E+I ++ HGI Sbjct: 431 VTGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGI- 489 Query: 438 GFIEKGNRI-EAIRTAIEMLNK--QDVLVVAGKGHE------TVHIVTNGEKKM 482 +++ + + EA+R A + V++ GKG+E H+ G+ K+ Sbjct: 490 -VLDRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKV 542 >gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 457 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 346 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 405 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 406 TYTPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 441 >gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis ATCC 29200] gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0043] gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF] Length = 474 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0102] gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0031] Length = 474 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188] Length = 457 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWSDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 346 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 405 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 406 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 441 >gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0635] gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0630] Length = 474 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWSDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct] Length = 487 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 49 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 98 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 99 IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 152 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 153 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 201 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 202 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 260 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N I + +++D+ P G+ ++N+++ Sbjct: 261 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 310 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF + + I Y ++ +++ ++++ Sbjct: 311 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 370 Query: 378 TITSGRIIVV 387 +I+ + Sbjct: 371 EFDGKKILAI 380 >gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0860] Length = 474 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 423 TYTPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458 >gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0012] Length = 474 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458 >gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 452 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 43/333 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + I+EV++D+R + AG +FVA+ G + D H F QA A GA A++VS + Sbjct: 18 QGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA----- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++V++TR+ A+ + + P ++A+TG+SGK+SV I + G + Sbjct: 73 ----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNT 128 Query: 144 SFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G +N + P + + L K Y + + A+ G + Sbjct: 129 LYTAGNL--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGD 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA F H + T+ + D L PLPG + Sbjct: 234 RKVWRFSPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL A L +A+G D A V L +L VPGR Sbjct: 285 NALAATSLAMAVGADLAAVKAGLAQLQAVPGRL 317 >gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Parascardovia denticolens F0305] gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide synthetase) [Parascardovia denticolens F0305] Length = 546 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 121/474 (25%), Positives = 209/474 (44%), Gaps = 76/474 (16%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TS 124 A+A+ + + +DFS+ ++ ++V + R+ L+L ++ YG P + L V G T Sbjct: 83 ADALGLPCYVAQEDFSSATKALG--IIVTDVRQALALLSAAFYGD-PASQLKVVGITGTK 139 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---------FAQDNRLTTPSPIYLAKALS 175 GK++ A F I LS++ G + +SS F + N LTTP + L + + Sbjct: 140 GKTTTAYFTHAI-----LSAYSGGKAALLSSVDNCVDGTTFTESN-LTTPESLDLYRMMR 193 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 G+ ++ +E SS R+ G+++ G+F N+ DHI H T + YF K Sbjct: 194 QAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCK--- 250 Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV--GYQGKFIH----------L 279 ++ ++ A A++ V + RAH AG + G G H L Sbjct: 251 -RQIAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASL 309 Query: 280 KKVCAIHNKQQVTISV---EGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDS----- 329 V A T+ +G+ F DF + G+F NA A + ++G+D Sbjct: 310 PTVTASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAI 369 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIV 386 A LE +EK+ + GR E ++ +G VDYAH S +L + RII+ Sbjct: 370 AQALEAMEKV-TISGRMETF-SSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIIL 427 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---------RAEIIHGIP 437 V G G++ +R + + A D I T+++ +E E+I ++ HGI Sbjct: 428 VTGSAGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGI- 486 Query: 438 GFIEKGNRI-EAIRTAIEMLNK--QDVLVVAGKGHE------TVHIVTNGEKKM 482 +++ + + EA+R A + V++ GKG+E H+ G+ K+ Sbjct: 487 -VLDRTHALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKV 539 >gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y4.1MC1] Length = 458 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 57/359 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS+D+R IQ G ++V + G K DGH F+ A+ +GA A++ S + ++ Sbjct: 27 VHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSET------EGSPPAD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142 P++VVD+T + L A R + ++ +TG++GK++ V ++ + G Sbjct: 81 VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGN 140 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T+ +D + V + S+ G + + Sbjct: 141 LNNHIGVPLTLLRLEEDVEMAV--------------------VEMGMSNFGEIELLSNIA 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A TN+G H+ +++ AK+ + L K++ +Y D E + + Sbjct: 181 EPDAAIITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYNGD----EPLLASRV 234 Query: 263 AGC----RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 A VL+ G Y + +HL+ N TI + + F P+ G+ V Sbjct: 235 AHLPLPEHVLTFGQGNKNDYYPESVHLQA-----NGMMFTIR-QAANRSFFLPILGKHHV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 YNAL A + G+ V E L +L V R E + T G ++ A+ +N M Sbjct: 289 YNALAALAVARFFGVSWENVQEALSRLQVTRMRMEVIETEK--GWTVINDAYNANPTSM 345 >gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis V583] gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis PC1.1] Length = 457 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus faecium DO] gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium E1162] Length = 470 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 41 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 93 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 N P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 94 NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 153 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 154 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 197 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+ + ++ AD+ + Sbjct: 198 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 252 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 253 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 305 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 306 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 364 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 365 TKGRRIAVLA 374 >gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2141] gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0645] Length = 474 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458 >gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 458 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 31/369 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR +Q G+++ A+ G + DGH F+PQA + GA +VS + + A ++ + Sbjct: 15 LSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHAAV 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + VD+ + +S A+ I+ VTG+ GK++ S + + S+F+ T Sbjct: 75 VKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLA----SAFE--ADCT 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----G 207 +F +N L P + L ++ V V E GL Q + + IA G Sbjct: 129 KGNF--NNELGMP--------YTLLQTEPSCEVLVLEMGMDGLGQ--IADLARIARPKYG 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGC 265 TN+G H++ T+ AK + E L E A + AD Y+ +++ RA G Sbjct: 177 VITNVGVSHLERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGI 236 Query: 266 RVLSVG--YQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R++ + ++ + + T++ G+ + G V NA AA + Sbjct: 237 RIVRFDGTAENSDVYATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVG 296 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT- 380 + GI V L + GR + + +SRG ++ D Y + S+ L + + + Sbjct: 297 LEFGIALDQVAAALSGVEPESGR-QALKRSSRGFLVFDDAYNASPESMAAALNVLASFSA 355 Query: 381 SGRIIVVFG 389 SGR I V G Sbjct: 356 SGRRIAVLG 364 >gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae NTUH-K2044] gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella sp. MS 92-3] Length = 452 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 144/333 (43%), Gaps = 43/333 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + I+EV++D+R + AG +FVA+ G + D H F QA A GA A++VS + Sbjct: 18 QGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA----- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++V++TR+ A+ + + P ++A+TG+SGK+SV I + G + Sbjct: 73 ----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNT 128 Query: 144 SFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + G +N + P + + L K Y + + A+ G + Sbjct: 129 LYTAGNL--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + AK ++ LP+ AI+ AD+ Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGD 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA F H + T+ + D L PLPG + Sbjct: 234 RKVWRFSPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL A L +A+G D A V L +L VPGR Sbjct: 285 NALAATSLAMAVGADLAAVKAGLAQLQAVPGRL 317 >gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Enterococcus sp. 7L76] Length = 457 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis FSC198] gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. tularensis FSC033] gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis NE061598] Length = 452 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A +A+G++ L++ + + GRF + + I Y ++ +++ ++++ Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLA 344 Query: 378 TITSGRIIVV 387 +I+ + Sbjct: 345 EFDGKKILAI 354 >gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX0104] gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis HH22] gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis TX1322] gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis S613] gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0411] gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0109] gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2134] gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4248] gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 512] gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis DAPTO 516] gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4000] gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0017] gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0027] gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX4244] gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0312] gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1302] gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1341] gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309B] gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0309A] gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1467] Length = 474 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella sp. 1_1_55] Length = 452 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P + + L K Y + + A+ G + + A Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259 NL H++ + AK ++ LP+ AI+ AD+ ++V + Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + NA F H + T+ + D L PLPG + NAL A Sbjct: 240 SPNAA--------NSDFTATNVQITSHGT-EFTLQTPTGNVDVLLPLPGRHNIANALAAT 290 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346 L +A+G D A V L +L VPGR Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317 >gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,410] gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0082] Length = 450 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 152/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 N P++ V + K + A+ K ++A+TG++GK++ + + G Sbjct: 74 NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+ + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella quintana str. Toulouse] Length = 473 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 89/376 (23%), Positives = 163/376 (43%), Gaps = 42/376 (11%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 D LI + F + + +S DSR + G IF I G+ DGH F QA A+GA Sbjct: 6 DKQALIAAIDGFVIGCMPETFSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQAYARGAG 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++V+ L D + + P++VV + + L A + I+A+TG+ GK++ Sbjct: 66 VLIVAEN-RLTDME---KISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 ++Q+ G + + P+ LA+ + S G+ + + Sbjct: 122 KEALKQVLATVGKVHANLASLNNCWGV----------PLTLAR-MPVESDYGIFEIGM-- 168 Query: 190 SSHGLDQHRLDGIKLIAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +H + L +KL+ T++ H+ + + + +AK +FE L +E A++ Sbjct: 169 -NHADEIRPL--VKLVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEG-LDEEGVALL 224 Query: 247 YADDAYSKEVMKRAHNAGC-RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AD+ + ++++A G ++LS G YQ + I L+ + + + + G++ Sbjct: 225 NADNGFFSYLVRKAKQCGVKKILSFGEAENSDYQARNIRLRT-----DFSSMIVHIGGQE 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGG 356 PG V N+L C IGID A V L + + G R++ N GG Sbjct: 280 KVIKIGAPGRHIVQNSLAVIAACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPN--GG 337 Query: 357 RIY-VDYAHTSNSLEM 371 + +D ++ +N M Sbjct: 338 EFHLIDESYNANPASM 353 >gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1346] Length = 474 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGDLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Megasphaera micronuciformis F0359] Length = 457 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 46/373 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA---YSLQDFSAT 85 + + + +D+R I +FVA+ G K DGH FI QA++ G A++V A Y D++ Sbjct: 26 RYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIVDDAGRLYPDGDYT-- 83 Query: 86 IRSNTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I VV NT K L+L+ R + P ++AVTG+ GK+S S + + Sbjct: 84 ------IFVVKNTLKAYQDLALYHRRRFAI-P--VVAVTGSVGKTSTRSLIATVL----- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S + T +F +N + P + L G V + G + D Sbjct: 130 -SQKYNVLQTEKNF--NNEIGLPRTL-----LQLTGEHGACVVEMGMRGLGQIKELADIA 181 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G TN+G+ HI+ +Q AK L E L + A++ DD K V A Sbjct: 182 EPTIGVVTNVGKSHIELLGSQANIAKAKGELVEA-LGTDGTAVLNGDD---KRVAAMAEK 237 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVA 318 + +S G + + K IS + FD + + G VYNAL A Sbjct: 238 CKGKTVSFGIKENAPVMAGAIKTDEK---GISFTCRCFDQVMDVHMSVLGRHNVYNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 + +G+ + + L + VP R E + +++ A+ +N S+ + + Sbjct: 295 VAVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLED---LTFINDAYNANPASMAEAVHTL 351 Query: 377 RTITSGRIIVVFG 389 ++ SGR I V G Sbjct: 352 MSVASGRKIAVLG 364 >gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6] Length = 457 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella variicola At-22] Length = 452 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P + + L K Y + + A+ G + + A Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259 NL H++ + AK ++ LP+ AI+ AD+ ++V + Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + NA F H + T+ + D L PLPG + NAL A Sbjct: 240 SPNAA--------NSDFTATNVQITSHGTE-FTLQTPTGNVDVLLPLPGRHNIANALAAT 290 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346 L +A+G D A V L +L VPGR Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317 >gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX0855] Length = 474 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHHFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG----CGGDRDQGKRPIMGKIALDL--------ADIAIVTDDNPR 421 + ++ G+ I V G G D + + +A D +++A + D Sbjct: 363 SFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQE 422 Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + P I + +K + E I ++L +D++V+ G Sbjct: 423 TYAPANIHS---------FKKEEKNELIEAVKKVLQPEDMVVLKG 458 >gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,230,933] Length = 450 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 N P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+ + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecalis R712] Length = 474 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 452 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/385 (22%), Positives = 156/385 (40%), Gaps = 56/385 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS +S + +FVAIV N+ DGH FIP AIA GA+A++VS QD N Sbjct: 23 IQTVSINSNEVNQDALFVAIVANR-DGHEFIPSAIANGAKALLVSKK---QDI------N 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------QQICQRSGLS 143 P +V +NT K L A I+++TG+ GK++V + +++ G Sbjct: 73 IPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGGKKVHFTQGNF 132 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + +G T+ L TP + A + S G + E I+ Sbjct: 133 NNYLGVPMTV--------LETPQDVDFAVIETGTSVAGEIKAAAEI------------IQ 172 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSK 254 TN+G H++ +T K L + LPK+ I+ YAD K Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGVCIVNLDDERIPAYADKLDCK 231 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ N ++ + YQ V I + K++ + P G+ + N Sbjct: 232 KITCSMSNQDADIIILDYQ----------VTPELYDVKIRIFNKEYSYQLPNIGKHNLSN 281 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 +++A +A G++ L++ + + GRF N + + Y ++ +++ + Sbjct: 282 SMLAIASVVAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIA 341 Query: 375 NIRTITSGRIIVVFGCGGDRDQGKR 399 ++ ++I + D+G+ Sbjct: 342 DLAEFDGKKVIAITSMRELGDEGEN 366 >gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium 1,231,502] gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterococcus faecium U0317] gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a01] gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133B] gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133A] gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133C] gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecium TX0133a04] Length = 450 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 N P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 NFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+ + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLV-SDGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAKGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 G+ + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFGLSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX2137] Length = 474 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|163814275|ref|ZP_02205664.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759] gi|158449910|gb|EDP26905.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759] Length = 255 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNALV 317 G +V+ G Q ++ H I N Q +S G+ L G+F N Sbjct: 12 GVKVILFG-QKQYDHDPADAVIGNVQMGMSGLTFELSYRGRTDTIHTNLVGKFNAENITA 70 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AA + +G+D V +++L +PGR FV N R + +DYAH S + + IR Sbjct: 71 AALAALELGVDIDTVKSSVKEL-FIPGRLNFVEANGR--HVIIDYAHNHMSYSSLFRTIR 127 Query: 378 TI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---I 433 +I + R+ + G GD+ G+R G++ AD ++T+ + SE P KI +EI + Sbjct: 128 SIYPTDRLTALVGAMGDKAFGRRREAGQMTNVYADRVVITEQDSGSEHPAKIGSEIARYV 187 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE-TVHIVTNGEKKMSVDCDIIREI 492 H + + + R AIR ++ + DV+V+ GKG E T+ + N + + D +I++ Sbjct: 188 HKLCKIVPR--REAAIRYILDKSDPGDVIVLTGKGAEKTLRVGRNSVRPYAGDLEIVKAW 245 Query: 493 L 493 L Sbjct: 246 L 246 >gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 457 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 20 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHHFIESAMANGCQA-----AFWGQDL- 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 73 VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 132 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 133 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 184 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 230 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 231 LVEKVTQ---QVITFGFSQES-QLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 287 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 345 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 346 SFSKMSKVGKRIAVLG 361 >gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ruminis ATCC 25644] Length = 455 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 157/371 (42%), Gaps = 33/371 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + I VS DSR ++ G +FV ++ + DGH F+ A GA A + + + Sbjct: 19 QYDQITITSVSFDSRSLEQGALFVPLIASN-DGHEFVEAAKQNGACAALWQKDHENR--- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+L+VD+T + L K ++A+TG++GK++ + + Sbjct: 75 ---PQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMIAAVL------ 125 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q T +F +N + P + LS + + V + G H + + Sbjct: 126 STQFNVAKTHDNF--NNHIGVPMTV-----LSMEPNTEILVVEIGMDHFGELDHLVHLLD 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G HI++ +T+ +AKM + L KE ++Y D +++RA Sbjct: 179 PDVAVITMIGEAHIEFFKTRDRIADAKMEITHAL--KEDGLLVYNGD--EPLLIERAEKL 234 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G G + L+ + + ++ + V + + +F P+ G + V NAL A LC Sbjct: 235 DFETKTFG-TGANVDLQAQNIVSDAEKTSFRVKQWPELNFTIPMIGAYNVKNAL--AALC 291 Query: 323 IA--IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + ID +++ LE + R E+V S G I D Y + +L + Sbjct: 292 VGSEFQIDPRSMVKALEHFDLTRNRTEWVKA-SNGADILSDVYNSNPTACAEVLTAFQNA 350 Query: 380 -TSGRIIVVFG 389 T+GR V G Sbjct: 351 ETTGRRYAVLG 361 >gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 456 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 155/387 (40%), Gaps = 55/387 (14%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P + ++ V +DSR + G +FV IVG + D H FIPQ + GA A + D Sbjct: 20 PADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIPQVMEAGALATLSERVLDNAD 79 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 F P + V+++ + + A + ++ +TG+ GK+S + + + Sbjct: 80 F--------PYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVGKTSTKEVIASVLNQ-- 129 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + T +F +N L P ++ + + + + S G + RL Sbjct: 130 ----KYHTLKTQGNF--NNELGLPLTVFRLR-----DGDEIAVLEMGISDFG-EMTRLAQ 177 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-------AYS 253 I + TN+G H++ + AK +F+ L P E ++ DD Y Sbjct: 178 IARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRP-EGHIVLNGDDDKLITVKEYE 236 Query: 254 K------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 K + G +++S G +G C IH + F P+P Sbjct: 237 KIKPVFFGMSNECQVYGDKIVSRGLKG------MTCTIH--------LGDTAFTVDIPMP 282 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G VYNAL AA + G+ + + +E L + GRF + T+ + VD + +N Sbjct: 283 GRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPISGRFRMIETDK---FLIVDDCYNAN 339 Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGD 393 + M ++ +GR I V G G+ Sbjct: 340 PMSMKASLDVLQDGAGRKIAVLGDMGE 366 >gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus faecalis TX1342] Length = 474 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 44/376 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P+L V + + A+ K N++AVTG++GK++ + + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFVT 149 Query: 138 -QRSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G + QIG P + + + +L + A+ +S+LS+ V+ Sbjct: 150 YKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQPEVA--------- 200 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + T +G H++ ++ AKM + + L K+ + +D+ + Sbjct: 201 ------------AITMIGEAHVENLGSRAGIAQAKMEIVDGL-AKDGSLFVPSDEPLLEP 247 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++++ +V++ G+ + L+ + K+Q + + F P+PG + V NA Sbjct: 248 LVEKVTQ---QVITFGFSQES-QLQGIVINEAKEQTSFKISDTQMTFTIPVPGTYNVTNA 303 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A G+ + + + + L + R E++ + G I D Y ++ ++L Sbjct: 304 LIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKA-ANGAEILSDVYNANPTAMGLVLD 362 Query: 375 NIRTITS-GRIIVVFG 389 + ++ G+ I V G Sbjct: 363 SFSKMSKVGKRIAVLG 378 >gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Carnobacterium sp. 17-4] Length = 465 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 26/370 (7%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W +R+I V+ D+R + +FV ++GN DGH FI +A+ GA + S L+D Sbjct: 22 KWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILKAVENGAAVSLWSKP--LKDLP 78 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + + PI+ V++T K L A K ++ +TG++GK++ + S Sbjct: 79 LELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSNGKTTTKDMADAVLS----S 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +++ T +F +N + P I L V + + S G + D K Sbjct: 135 QYRVHKTQ--GNF--NNHIGLPITI-----LEMPIETEVVILEMGMSRAGEIKVLSDLAK 185 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262 T +G HI++ ++ +AKM + L KE+ +IY ++ +E + Sbjct: 186 PDVAIITMIGESHIEFFGSRAGIADAKMEICSGL--KENGVLIYPGEEPLLQERVAVLKG 243 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AG 320 + + + L ++ Q ++ E D P+ G + V NAL A AG Sbjct: 244 SQLKTFGTSPENDLYPLNIDAQMN--QTSFVTNERPDLVVSLPVLGTYNVNNALAALMAG 301 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + I I+ + L + + R E++ + + Y +++ +L N T T Sbjct: 302 MTLGISIEKS--APKLAQFQLTKNRTEWLKGINESSILNDAYNANPTAMKAVLDNFSTFT 359 Query: 381 -SGRIIVVFG 389 +G+ IVV G Sbjct: 360 NTGKKIVVLG 369 >gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis brookii D9] Length = 437 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 130/302 (43%), Gaps = 36/302 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R +Q G IF+A+ G K DGH F+ AIA+GA A +V Y D+ N P+ Sbjct: 33 IQTDTRVLQPGEIFLALGGEKFDGHQFVEMAIARGAVAAIVDYTY---DY-----PNLPV 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V NT A G+ ++ VTG+ GK++ + + G T Sbjct: 85 IKVSNTLNAYQELAKWWRGQFGIPVIGVTGSVGKTTTKELIASVLGTRGKVH------KT 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFT 210 +F +N + P K L L S+G +E + G Q L I K G T Sbjct: 139 YGNF--NNEIGVP------KTLLEL-SEGDDFAVIEMAMRGRGQIGELTHIAKPNIGVIT 189 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ ++QA AK L E +P +S A++ D+ K+ + V+S Sbjct: 190 NVGTAHIELLGSEQAIAEAKCELLAE-MPNDSVAVLNYDNPLLMTTAKQVWSG--EVISY 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G+ G I K V + Q++ + PL G N L A + + +D Sbjct: 247 GFSGGDIQGKLV----DYQKIEVG----GMTLPLPLTGVHNGSNFLAALAVAKVLDVDWK 298 Query: 331 LV 332 L+ Sbjct: 299 LL 300 >gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 6P18H1] Length = 457 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+V+ S S +I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGAVAVVIQQENS----SISI-- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + SS + Sbjct: 78 --PQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAASSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDVWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Klebsiella pneumoniae 342] Length = 452 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+EV+SD+R + AG +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 IDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPLA---------CD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N + P + + L K Y + + A+ G + + A Sbjct: 135 L--------NNDIGVPMTLLRLTKEHQY------AVIELGANHQGEIAWTVSLTRPEAAL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKR 259 NL H++ + AK ++ LP+ AI+ AD+ ++V + Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWLNWQAVIGDRKVWRF 239 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + NA F H + T+ + D L PLPG + NAL A Sbjct: 240 SPNAA--------NSDFTATNVQITSHGTE-FTLHTPTGNVDVLLPLPGRHNIANALAAT 290 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346 L +A+G D A V L +L VPGR Sbjct: 291 SLAMAVGADLAAVKAGLAQLKAVPGRL 317 >gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM 10507] Length = 458 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 98/407 (24%), Positives = 169/407 (41%), Gaps = 62/407 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W E + ++SDSR G +FV IVG + DGH FIP + GA A + F Sbjct: 24 RWTE--VTAITSDSRQAAPGCLFVPIVGERVDGHSFIPNVMEAGALATLSQKELPEARFP 81 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I+ + + V + KF + +L K P ++ +TG+ GK+S + + + Sbjct: 82 -YIQVASSLQAVKDIAKF---YLEQL--KIP--VVGITGSVGKTSTKEVIASVLK----E 129 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + I T +F +N L P ++ + ++ + S D R D Sbjct: 130 KYHI--LKTQGNF--NNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSRLADIARPDTCV 185 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKE 255 + TN+G+ H+++ + AK +F L + AI+ DD KE Sbjct: 186 I-----TNIGQCHLEFLGDRDGVLKAKTEVF-RYLKEGGRAILNGDDDKLATIRQVQGKE 239 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + N V + Q + LK + C IH + +F P+PG+ VYN Sbjct: 240 PIFFGMNPAFPVYADQIQSR--GLKGMSCRIHLPE--------AEFAVEIPMPGQHMVYN 289 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--- 371 AL AA + + G+ + +E L + GRF + T+ + VD + +N + M Sbjct: 290 ALAAAAVGMVHGLTPEQIRRGIESLEPISGRFRMIETDH---FLIVDDCYNANPVSMKAS 346 Query: 372 --ILKNIRTITSGRIIVVFGCGGDRDQGKRPI-------MGKIALDL 409 +LK+ GR + + G G+ + ++ + G+ LDL Sbjct: 347 LDVLKD----ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDL 389 >gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 462 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 42/370 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S S I+ IF+A++GN+ DGH F+ QA+ GA+A++V+ SL + Sbjct: 24 INTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAGAKALLVNRYVSL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L A + + I+A+TG+SGK+SV I + G Sbjct: 75 IPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKEMTASILKECG-------- 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS- 208 + I++ N S L L+Y G+ VE S+ L + L + I G+ Sbjct: 127 -TVIATQKNYNNFIGVSITLL--KLTY----GIDFAVVELGSNKLGE--LKKLGEIVGAD 177 Query: 209 ---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----KEVMKRA 260 N+ H+ + K ++F + + A+I D+YS ++ Sbjct: 178 VALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINL-DSYSFVQGNSILLNFK 236 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G F + H + S G F+ P+ G + N L A+ Sbjct: 237 KKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFM-PILGIHNISNILAASA 295 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRT 378 L A+G + ++ L+K++ +PGR F F+ +RG +D + +N MI N+ + Sbjct: 296 LSFAVGASLSNIVHGLQKMNALPGRLFPFI--LNRGKLCLIDDTYNANIGSMIAAINVLS 353 Query: 379 ITSG-RIIVV 387 G RI+VV Sbjct: 354 FMPGYRILVV 363 >gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium chlorophenolicum L-1] Length = 458 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 170/389 (43%), Gaps = 58/389 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ +A QGA +VS A + Sbjct: 24 VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSEAIA----------Q 73 Query: 90 TPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSV--ASF--VQQIC----Q 138 +LV D+ +L +R+ GK ++ VTG+ GK+ A F + +IC Sbjct: 74 PHVLVPDSAAALEALARASRARMQGK----VVGVTGSVGKTGTKEALFHALDRICPGEVH 129 Query: 139 RSGLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 RS + S+ +G ++S +++ + A L+ L+ Q HV++ Sbjct: 130 RS-VKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAALTRQVRPHVAI-------- 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 T + HI++ T++ AK +FE L P + I Y D + Sbjct: 181 -------------VTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPY-DSPHVAT 226 Query: 256 VMKRAHNAGCRVLSVGY-QGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +A R+L+ G+ G +H ++ V A VT ++ G + F PGE V Sbjct: 227 LYAKAEKHAARILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVS 286 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM- 371 NAL A+G D A L ++ +PGR E GG + +D ++ +N L M Sbjct: 287 NALAVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMA 346 Query: 372 -ILKNIRTITSGRIIVVFGCGGDRDQGKR 399 LK + +GR I V GG R+ G R Sbjct: 347 ATLKQLGREQAGRRIAVL--GGMRELGDR 373 >gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella sediminis HAW-EB3] Length = 455 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 39/328 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I V SDSR I +FVA+ G + DGH F A+ GA A++V+ L Sbjct: 21 DTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHELPL------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P L+V +T+K + + L +A+TG++GK+SV V I + + Sbjct: 74 --DLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +F +N + P + L GV + A+ G + +K Sbjct: 132 AG------NF--NNEIGVPLTLL---RLEEGDEFGVFELG--ANHRGEIDYTSSLVKPDV 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + AK +F L P + A+I ADD++++ VMK A + + Sbjct: 179 ALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSP-DGTAVINADDSFAR-VMKEAASEHKQ 236 Query: 267 VL-----SVGYQGKFIH---LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + QG + L + C +S ++ PL G QV NAL A Sbjct: 237 LTFAIEAAADLQGSGLEPDLLGRYC-------FKMSYLNQEVSVTLPLSGRHQVSNALAA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346 AG+C+ +G+ + ++ L L V GR Sbjct: 290 AGICLTLGLPLSEIVSGLSLLEPVKGRM 317 >gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum EA 2018] Length = 455 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/395 (22%), Positives = 183/395 (46%), Gaps = 41/395 (10%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L + + + +N I ++ + N+VS D+R + G IF+AI G +G+ FI Sbjct: 1 MENLTFNEIAKAVNGKVI--LRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHN 58 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +GA +V + +D + + + IL+V++T+K L A ++A+TG Sbjct: 59 AVQKGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITG 115 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQ 180 ++GK+S + + S F++ TS +F +N + P I+ L K+ + Sbjct: 116 STGKTSTKDITASVLR----SKFRVFKTS--GNF--NNEIGLPLMIFKLDKSYEVAVLEM 167 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ H + H + + I LI TN+G HI+ ++++ AK+ + + K Sbjct: 168 GMNHFN---EIHNMAKAARPDIALI----TNIGISHIENLKSRENILKAKLEI-TDFFTK 219 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 ++ I+ D+ +++K+ VL S+ +G ++ + +C + + E Sbjct: 220 DNLLIVNGDN----DLLKKHEFKSINVLKTSLNKEGN-LNAENLCLHEGNSEFEVQGE-- 272 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGR 357 + +PG+ + NA+++ + +G+ + + L+ L + R + V G N Sbjct: 273 --KLVLNMPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIVNGENI---- 326 Query: 358 IYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGC 390 + VD ++ ++ MI + + + R I V G Sbjct: 327 VIVDDSYNASPDSMIAAIDVTKNLKGNRRIAVLGT 361 >gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Lactobacillus sakei subsp. sakei 23K] gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus sakei subsp. sakei 23K] Length = 458 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 116/456 (25%), Positives = 192/456 (42%), Gaps = 52/456 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW ++ V+ D+R ++ G +FV + GN+ DGH FI QA GA A + +SA Q Sbjct: 20 QWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFINQARENGAVATLWASARDDQP-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ P+L+V + A R K ++A+TG++GK++ + S Sbjct: 77 ----TDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDMTAAVLG----S 128 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRL 199 + I T ++F +N + P I LS + T + V G+D+ H L Sbjct: 129 QYNIHKTQ--ANF--NNEIGVPQTI--------LSMEANTEILV--IEMGMDRPGQLHAL 174 Query: 200 DGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + + T +G HI++ +T+ +AKM + + L KE ++Y D + + Sbjct: 175 SEIAMPDVAAITMIGEAHIEFFKTRDKIADAKMEITDFL--KEDGLLVY--DGDEPLLNE 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R + + +V A K Q ++ D F P+ G + V NAL A Sbjct: 231 RVGDLERETFGSATTNTLYPI-QVRAGETKTQFKLNA-WPDVAFEIPMMGAYNVNNALAA 288 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + I ++ + L V R E+ VGT G R+ D Y + +L+N Sbjct: 289 ILIGQHYHIKPEVMSKALANFEVTRNRTEWLVGT--AGQRMLSDVYNSNPTAAIEVLRNF 346 Query: 377 RTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV----TDDNPRSEDPEKIR 429 T GR I V G + + + +A LD A I V T+ P + I Sbjct: 347 SHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIY 406 Query: 430 -AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 AE +H + EK + E I E + D++V+ Sbjct: 407 PAEQLH----YFEKTQQPELITALAETIQPSDLVVL 438 >gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 452 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 48/328 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + F G Sbjct: 73 IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH-FTKGN 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAG 207 +N L P I + V +EA ++ G + D I+ Sbjct: 132 L--------NNYLGVPMTILE-------TPHDVDFAVIEAGTNVGGEIKAAADIIQPNIA 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVMK 258 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 177 MITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKISC 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 N +L + Y+ A N I + +++D+ P G+ ++N+++A Sbjct: 236 SMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLA 285 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +A+G++ L++ + + GRF Sbjct: 286 IASVVAVGLEPKDFLQNTQNIKNYKGRF 313 >gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera watsonii WH 8501] Length = 452 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 42/336 (12%) Query: 6 LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I ++ P +++ ++ IN++S+DSR IQ IF+A+ G+K DGH F+ + I Sbjct: 1 MILREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTG 122 +GA A++V+ S++ P +VV +T A+ R + K P I+ +TG Sbjct: 61 DKGAIALIVNHEVSVKS-----TKEIPQIVVKDTLIAYQEIANWWRNHVKIP--IIGITG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK++ + + G T +++ +N + P K L L++ Sbjct: 114 SVGKTTTKEIIAAVLGVYG------NVHKTQANY--NNEIGVP------KTLLGLTTNH- 158 Query: 183 THVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + +E + G + L + IA G TN+G HI ++QA AK L E + Sbjct: 159 NYAVIEMAMRGKGEIAL--LSQIACPTIGIITNVGTAHIGRLGSRQAIAEAKCELLAE-M 215 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P+ S AI+ DD E + ++ G +G I + + + Q+ + VEG Sbjct: 216 PENSVAILNHDDQRLVETAATVWQG--KTITYGLEGGDITGELL-----ENQI-LRVEG- 266 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 DF PLPG N L A + + +D ++E Sbjct: 267 -MDFPLPLPGRHNALNYLAALAVTKELNLDWTFLME 301 >gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Mollicutes bacterium D7] gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402] gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. D7] Length = 450 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 133/307 (43%), Gaps = 42/307 (13%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S DSR + G +++ I+G + DGH FI A GA AI+ ++D ++ Sbjct: 27 SQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNGASAIITDRL--IED------DKHVVI 78 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +VDNT K L A L ++ +TG+ GK+S V + ++ Q T Sbjct: 79 LVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVVKQ------QYKTLKTE 132 Query: 154 SSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208 ++ +N + P I L + G+ H+ + ++ + IA + Sbjct: 133 GNY--NNNIGLPLTILRLKDEEVMILEMGMNHL-----------NEMEELSRIACPDISA 179 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI +++ AK+ + + S +I D+ +++ +V+ Sbjct: 180 ITNVGTAHIGELGSRENILKAKLEIVAG-MSDGSTLVINGDN----DMLSTVRFDNFKVV 234 Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 VG +KV + + + TI+ GK + + P+PG V NALVA IAIGI Sbjct: 235 KVGVDCAAVFKAEKVILMDDHSEFTINYNGKVYQVVVPVPGNHFVLNALVA----IAIGI 290 Query: 328 DSALVLE 334 + + +E Sbjct: 291 NLEIPME 297 >gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum NCTC 2916] Length = 462 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVSKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A GK ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. ATCC 51142] Length = 452 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%) Query: 6 LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + P ++ N L + INE+++D+R+I IF+A+ G+K DGHLF +AI Sbjct: 1 MILSEIPNILSNSLKEISQPLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA A++++ S+ P ++V +T A+ K I+ +TG+ Sbjct: 61 DKGAIALILNHKISVNS-----TKKIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSV 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G T +++ +N + P + A++ V Sbjct: 116 GKTTTKELISAVLGVYGKVH------KTQANY--NNEIGVPKTLL---AITTSDDYAVIE 164 Query: 185 VSVEASSH--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 +++ A L Q I G TN+G HI +++A AK L E +P +S Sbjct: 165 MAMRARGEIALLSQIACPTI----GIITNVGTAHIGRLGSREAIAEAKCELLAE-MPTDS 219 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ DD E + + ++ G +G I K + N+ + V+G DF Sbjct: 220 IAILNHDDQRLMETAAKVWQG--KTITYGLEGGDITGK---VLENQ---ILRVKG--MDF 269 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID 328 PLPG N L A + + +D Sbjct: 270 PLPLPGRHNALNYLAALAVTQQLNLD 295 >gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium acetobutylicum ATCC 824] Length = 452 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 170/367 (46%), Gaps = 39/367 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N+VS D+R + G IF+AI G +G+ FI A+ +GA +V + +D + + + Sbjct: 24 NDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKGAALCIVDEIHFEKD---SFKEDI 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 IL+V++T+K L A ++A+TG++GK+S + + S F++ T Sbjct: 81 SILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTKDITASVLR----SKFRVFKT 136 Query: 151 STISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 S +F +N + P I+ L K+ + G+ H + H + + I LI Sbjct: 137 S--GNF--NNEIGLPLMIFKLDKSYEVAVLEMGMNHFN---EIHNMAKAARPDIALI--- 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI+ ++++ AK+ + + K++ I+ D+ +++K+ VL Sbjct: 187 -TNIGISHIENLKSRENILKAKLEI-TDFFTKDNLLIVNGDN----DLLKKHEFKSINVL 240 Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S+ +G ++ + +C + + E + +PG+ + NA+++ + +G Sbjct: 241 KTSLNKEGN-LNAENLCLHEGNSEFEVQGE----KLVLNMPGKHNIENAMLSIAAALKLG 295 Query: 327 IDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGR 383 + + + L+ L + R + V G N + VD ++ ++ MI + + + R Sbjct: 296 LTFEEIRKGLKDLELTAMRLDIVNGENI----VIVDDSYNASPDSMIAAIDVTKNLKGNR 351 Query: 384 IIVVFGC 390 I V G Sbjct: 352 RIAVLGT 358 >gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Ralstonia solanacearum CFBP2957] gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CFBP2957] Length = 482 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/377 (25%), Positives = 162/377 (42%), Gaps = 26/377 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I V++DSR +Q G +FVA++G + D H F+ +A+GA A++VS + +A Sbjct: 27 DAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVLVSRPPA----AALD 82 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 S +L V +TR L A+ + P ++AVTG++GK++V + S + + Sbjct: 83 LSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEMI------SAVFACA 136 Query: 147 IGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIK 203 +G + +++ +N + P ++ A L+ G+ H + L + Sbjct: 137 VGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNH---PGETEVLATIAQPTVA 193 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAH 261 LI N R+H ++ A+ LP + A+ D A E + RA Sbjct: 194 LI----NNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWRAA 248 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RVL G +G + V + Q V + G F F+ PL G NAL A Sbjct: 249 AGTRRVLDFGIEGGAVS-ATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAATAC 307 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 +A GI ++ + L V GR + GG + D Y +S+ + + T+ Sbjct: 308 ALAAGIAPEVIAQALSAFAPVKGRLQR-KPGVHGGLVIDDTYNANPDSVRAAIDALATLP 366 Query: 381 SGRIIVVFGCGGDRDQG 397 + R +V+ G QG Sbjct: 367 APRWLVLGDMGEVGAQG 383 >gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp. holarctica FSC022] Length = 452 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FV IV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A +A+G++ L++ + + GRF Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313 >gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 457 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 108/464 (23%), Positives = 187/464 (40%), Gaps = 64/464 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTP 91 +S+DSR I+ G +F+ + G + +G FI A+ G+ SL + + IR N P Sbjct: 28 ISTDSRTIKPGDLFIPLKGERFNGEKFIDDALNVGSA--------SLTESTNCIRHDNKP 79 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I+ V++T+ L A K +AVTG+SGK++ + + S + Sbjct: 80 IIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKTTTKDMIYDVL------SMKYNVLK 133 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--- 208 TI +F +N + P ++ L+ V VE G + R +K IA Sbjct: 134 TIGNF--NNEIGLPLTLF---TLNDDHDMAV----VEMGMSGFGEIRR--LKNIASPNVA 182 Query: 209 -FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +TN+G HI+ +++ AK L E+ ++ I DD K + K+ G + Sbjct: 183 VYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEKK----GPKF 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G I + + + ++G D +PG+ +YN+L A + I + Sbjct: 239 VTYGINNGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAICIGIQFDV 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386 + + + L K R + + G +I D Y +S++ L + T R + Sbjct: 299 NKEDIRKALAKFQPSAMRLNII--DVAGIKIINDVYNANPSSMKAALSVLGGYTERRKVA 356 Query: 387 VFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 V G G +D R + + + D+ I D + G IEK Sbjct: 357 VLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYA------------LKIADGAIEK 404 Query: 443 G----------NRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475 G N EAI ++ + D+ +V G +G E IV Sbjct: 405 GMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIV 448 >gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787] Length = 459 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/331 (23%), Positives = 145/331 (43%), Gaps = 43/331 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR I+ W+F+ I G + DGH FIPQ + +G A+ S L++ S P Sbjct: 31 VAIDSRKIEKDWLFIPIKGARVDGHSFIPQVMEKG--ALCTLSEVVLENVSH------PY 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSGLSSF 145 ++VD+ + L A ++ +TG+ GK+S +AS ++Q + + +G + Sbjct: 83 ILVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTSTKEMIASVLEQKYHVLKTAGNFNN 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 +IG TI + ++ + + G+ H + HRL + + Sbjct: 143 EIGLPLTIFNIRDEHEIA-------------VLEMGINHFG--------EMHRLAKMARP 181 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ + AK +F+ + P ++ I+ DD +++ G Sbjct: 182 DICVITNIGLCHLENLIDRDGILKAKTEMFDFMQP-DAKIILNGDD---DKLITVTDVKG 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLC 322 + G + H+ + V+ ++ D D + P+PG VYNAL A + Sbjct: 238 QTPMFFGLSTELDAFADNIHTHSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGALVG 297 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G+ + + + +E L V GR + T+S Sbjct: 298 RELGLTAEEIKKGIESLTPVSGRNNMILTDS 328 >gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulolyticum H10] Length = 459 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 96/381 (25%), Positives = 157/381 (41%), Gaps = 52/381 (13%) Query: 25 WRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 W + IN V++DSR + +F+ ++G K DGH +I Q GA + S Sbjct: 19 WGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCFNAGATVCLTSKQI----- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 T+ T ILV D+T K L A+ K ++ +TG+ GK+S V S + Sbjct: 74 -PTVTGCTAILV-DDTAKALRDLAAWYRRKFDIPVVGITGSVGKTSTKDMV------SCV 125 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDG 201 S Q T +F +N + P ++ + Y V +E G + RL Sbjct: 126 LSQQYKVLKTQGNF--NNEIGLPLTVF---NIDYSHEAAV----IEMGMSGFGEISRLTA 176 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR- 259 I + TN+G HI+ +Q+ AK+ + EE L K+ ++ DD + + Sbjct: 177 IARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEE-LDKDGLVVLNGDDPLLSSLKGKL 235 Query: 260 -------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEF 310 N G ++ YQ K +Q T + D ++ P+PG Sbjct: 236 SFRTVFYGMNVGSDYTALNYQPK-----------GEQGTTFEISVNDCLYNVEIPVPGIH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 VYNAL A I + I +++ +++ PG N G +I D Y + S+ Sbjct: 285 NVYNALAAIAAGIEMKIPMEIIINGIKQFS--PGNMRQSIINHNGIKIINDAYNASPQSM 342 Query: 370 EMILKNIRTITS-GRIIVVFG 389 + + ++ I+S R I V G Sbjct: 343 QAAINVLQEISSESRSIAVLG 363 >gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/339 (23%), Positives = 155/339 (45%), Gaps = 47/339 (13%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S+ +++ KI+ VS+DSR IQ +++ +VG DG LF+ + +GA A ++ Y Sbjct: 16 SLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKGASAFLIDRDYE 75 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-- 136 +++ + P + VD+T K L A + ++ +TG++GK++ + ++ Sbjct: 76 IKN-----NISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKDLLYEVLS 130 Query: 137 ----CQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 Q++ G + +IG TI S +D + A+ L + +S+ ++ Sbjct: 131 TKYKTQKTIGNLNNEIGVPKTILSLNEDTEI----------AVVELGTDKFGDISLTSNI 180 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 L I +I TN+G H+ ++++ AKM + E L + IY D Sbjct: 181 ------ALPDIAII----TNIGDSHLHNLKSKEGILKAKMEIVEGL--SDDGIFIYNGD- 227 Query: 252 YSKEVMKR---AHNAGCRVLSVGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 E MK+ ++ +++S G + F+ +K++ + K V+ S +G+ +D PL Sbjct: 228 --DETMKKEIDSYKVDQKIISFGLEDDNDFV-VKEIPSTPAK--VSFSHDGETYD--IPL 280 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 G +YN + +G+D+ V L K+ R Sbjct: 281 LGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANNR 319 >gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica OSU18] gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica URFT1] gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica LVS] gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis subsp. holarctica OSU18] gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica 257] gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 452 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FV IV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVTIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A +A+G++ L++ + + GRF Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313 >gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 462 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 90/374 (24%), Positives = 162/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS I + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKIGES 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD + + + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEV-TDFFCKDSILIINGDDDF----LSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E +FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A A+ I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRALDINYKDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cryptobacterium curtum DSM 15641] Length = 485 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 49/411 (11%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 L D + + P E + + DSR +Q G ++VA+ G + DG F A+ Sbjct: 3 LSASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALD 62 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA ++V + RS I+ V++T + A+ + +++A+TG+SG Sbjct: 63 AGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSG 122 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + V+ + R+G + + Q+N L P+ + A+ + V Sbjct: 123 KTTTKNLVRDVLARAG--------SVVATQGNQNNELGVPATLLRAE-------EDTQFV 167 Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 VE G Q ++ TN+G HI+ ++ AK + + Sbjct: 168 VVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKANTGI 227 Query: 244 AIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKF-------------------IHLKKV 282 A I A D ++ A G +L GK I L + Sbjct: 228 AFINASDDFASMLPAYGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIELDEA 287 Query: 283 -CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 CA + T+ L G V+NA AA + +G+ ++++++ LEK Sbjct: 288 GCA-----RFTLHTPTGTASVHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATS 342 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT-SGRIIVVFG 389 + GR V T S G + VD A+ +N S++ L + + +GR I V G Sbjct: 343 LDGRGRVVRTAS--GVVVVDDAYNANPDSMKASLGSFAAMHFAGRHIAVLG 391 >gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium Com15] Length = 450 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 45/370 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V DSR I G +FV + G + DGH FI QAI GA A S +SL A Sbjct: 21 KITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQAITNGASA----SFWSLPVEQAP--K 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQICQRSG 141 + P++ V + K + A+ K ++A+TG++GK+ SV S + + G Sbjct: 74 DFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKTTTKDLTASVLSEKYKTYKTQG 133 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI QD I L + + + +T +S+ A Sbjct: 134 NYNNNIGLPYTILHMPQDTE-----KIVLEMGMDHANE--ITELSLMAQPK--------- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A + T +G HI+ +++ AKM + + L+P + ++ AD+ + Sbjct: 178 ----AAAITMIGEAHIENLGSREGIAKAKMEITDGLVP-DGLLVVPADEPLLTPLTATLV 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G +H + K Q VEG+ F PLPG + V NAL+A + Sbjct: 233 QT---VTTFGIGNGDVHAE--VTAEGKAQTDFVVEGETFTI--PLPGSYNVTNALIAYTI 285 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 + + + L + + R E++ T G I D Y ++ ++L + + Sbjct: 286 GRFFELSIPEIRQGLAHVSITQNRTEWL-TAGNGAAILSDVYNANPTAMGLVLDTFKNLP 344 Query: 380 TSGRIIVVFG 389 T GR I V Sbjct: 345 TKGRRIAVLA 354 >gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter marianensis DSM 12885] gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter marianensis DSM 12885] Length = 592 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 34/290 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+ + S +Q G +FVAI G + +G F +A+ +GA IV Sbjct: 24 QVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGARVIVAEQPPPGPLPPGV--- 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 T I V D L A+R YG HP L V G +G + + + + ++ G Sbjct: 81 -TWIQVPDARAALSRLAANR-YG-HPAGRLLVVGITGTTGKTTTALLLHHLLKAAGWRAG 137 Query: 149 PTSTISSFAQDN-------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + S D RLTTP P+ L L + + G T V +E SS G+DQ R+D Sbjct: 138 ---LVGSLEVDTGRRRFTGRLTTPDPLELHGYLREMVTAGCTAVVMEVSSQGVDQRRVDD 194 Query: 202 IKLIAGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + G TNL +H++YH T Y AK R F ++P +++ +A ++ Sbjct: 195 VPFALGVVTNLAPLEHMEYHPTYDHYAAAKAR-FVAMIPPHGGVLMHEGEAAAR------ 247 Query: 261 HNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDFLFPLPG 308 L + +H + CA+ + ++V G+ + P PG Sbjct: 248 -------LGPAARAPVVHFGRGPRCALRLLDEEPVAV-GRLGEGAVPWPG 289 >gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5578] gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes 08-5923] Length = 470 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 156/378 (41%), Gaps = 66/378 (17%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I + D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMGAVATF------WQKDVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYPHE--- 238 Query: 254 KEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLF 304 E + + G R L+ G K A ++ EG F + Sbjct: 239 -ETLLLGNIIGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363 P+ GE V+N + A IGI+ + L+ + R E++ T S G RI D Y Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYN 348 Query: 364 HTSNSLEMILKNIRTITS 381 + +L+ +LK + S Sbjct: 349 SSPTALKTVLKTFMHMDS 366 >gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563] Length = 427 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 115/492 (23%), Positives = 213/492 (43%), Gaps = 80/492 (16%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L+ K FP L + KI V DSR I G +F AI ++G+ ++ Sbjct: 3 RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAI----QNGNQYVQ 47 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ +GA ++V++ YS ++ ++ V+NT + A ++A+T Sbjct: 48 EALDKGA-SLVIADRYS--------GNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I ++ FQ T+ ++ +N + P I L+ Sbjct: 99 GSNGKTTTKDIIYAILSKT----FQT--KKTLGNY--NNHIGLPFTI-----LNLEEKDE 145 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + SS G +D + IA G TN+G H+++ +T++ F AK EL Sbjct: 146 FAVLEMGMSSFG----EIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----EL 197 Query: 238 LP--KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LP E I DD + K++ + VGY + + ++ K + + S Sbjct: 198 LPYLPEGCFITSGDDVFLKKI---------PAIHVGYDERNDY--RIFGYKKKDRRS-SF 245 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + D + PL G+ V NA + + IG+DS + ++L ++ + P RFE + Sbjct: 246 QLNDKQYEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIELSPMRFE---RSEYQ 302 Query: 356 GRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQG--KRPIMGKIALD 408 G Y++ A+ ++ + M L ++ T+ I V G G+++ K I I+ Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 L I + PR K + IP + + E I+ ++ ++ VL+ A +G Sbjct: 363 LQAILLY---GPRM----KKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRG 415 Query: 469 HETVHIVTNGEK 480 + I+ EK Sbjct: 416 MKLEEIIEREEK 427 >gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidothermus cellulolyticus 11B] Length = 473 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 62/364 (17%) Query: 27 ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ER + V +DSR + G +FVAI G + DGH F QA++ GA A+ L D Sbjct: 24 ERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAV-------LADHPVG 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLS- 143 + P ++VD+T + L A P+ ++ +TG+SGK+S Q+ R G + Sbjct: 77 V----PAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDLGAQVLARLGPTV 132 Query: 144 ------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + ++G T+ +D R + L K S++GV H++ Sbjct: 133 APTGSLNTEVGLPLTVLRADRDTRF-----LVLEK-----SARGVGHIAYLC-------- 174 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ ++ G N+G H+ +++A AK L E LP + A++ ADD V+ Sbjct: 175 RIAPPRI--GVVLNVGSAHLGEFGSREAIAQAKGELVEA-LPADGTAVLNADDPL---VL 228 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----LPGEFQ-- 311 H RV++ G + + +T + F FP LP Q Sbjct: 229 GMRHRTRARVVTFGTSAD-------ADVRATEIMTDATARPSFRLCFPDGAGLPVALQMH 281 Query: 312 ----VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 V NAL A + +G+ + + L + + R+ T G ++ A+ +N Sbjct: 282 GVHHVSNALAVATVAWVLGLGAEEIAAALREARPL-SRWRMEVTTRDDGVTVINDAYNAN 340 Query: 368 SLEM 371 M Sbjct: 341 PESM 344 >gi|289612968|emb|CBI59981.1| unnamed protein product [Sordaria macrospora] Length = 88 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 49/74 (66%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 MG++ AD+AIVTDDN R+ED IRA+++ G P E G+R AIR A +M D+ Sbjct: 1 MGEVVATHADVAIVTDDNSRTEDAATIRAQVLEGAPNATEIGDRRAAIRAACDMAQAGDI 60 Query: 462 LVVAGKGHETVHIV 475 +++AGKGHE IV Sbjct: 61 VLIAGKGHEQGQIV 74 >gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudoalteromonas atlantica T6c] gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoalteromonas atlantica T6c] Length = 471 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 141/336 (41%), Gaps = 59/336 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+RHI + +F+A+ G DGH FI QA GA A+VVS + Sbjct: 30 IQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQTSGAIAVVVSR-----------QVE 78 Query: 90 TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 TP+ ++V +T+ L L + + +A+TG+SGK++V V I R G Sbjct: 79 TPLAQILVSDTKAALGLLGQAVKREVAPKTVAITGSSGKTTVKEMVAAILSRRG------ 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +T +F +N + P + +A + V + A+ G + + +K Sbjct: 133 KVLATKGNF--NNDIGVPLTLLRLEAQHEFAV-----VELGANHLGEIAYTTELVKPDVA 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 + N H++ + AK +F+ L K+ AI AD + Sbjct: 186 TIVNAAAAHLEGFGSLLGVARAKSEIFKG-LGKDGLAIFNADSQF--------------- 229 Query: 268 LSVGYQGKFIHLK------KVCAIHNKQQVTISVEG-KDF---------DFLFPLPGEFQ 311 + GK+ HL+ + A + Q V + + G DF PLPG Sbjct: 230 -YAFWHGKYEHLRNQRFSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHN 288 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V NALV+A L I +G + V L+ + V GR + Sbjct: 289 VSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQ 324 >gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas arsenicoxydans] gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) [Herminiimonas arsenicoxydans] Length = 498 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 121/293 (41%), Gaps = 53/293 (18%) Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + LFA L E ++A+TGT+GK++V S V +CQR+GL+ G Sbjct: 101 IELFAQALAALKEERNYTPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI------ 154 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215 SP L + ++S + V V E SS L H ++ + NL +D Sbjct: 155 ---------SPAALDRLDQAVASDALPQVWVLELSSFQL--HFTYSLQADVATVLNLTQD 203 Query: 216 HIDYHQTQQAYFNAKMRLF----------------EELLPKESPAIIYADDAYSKEVMKR 259 H+D+H AY + K R+F + LP + AD+A Sbjct: 204 HLDWHGDMAAYADDKARIFGSNTIRVLNRDDARVMQMALPSAAVITFGADEAGQANCFGL 263 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYN 314 A G R LSV + + K+ K V +++ K L P+ G+ N Sbjct: 264 ADENGMRWLSVAVAEEELPQKR----RKKDNVELAISTKK---LMPVDALKIRGQHNAIN 316 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 AL A LC AIG+ A +L L + H P R E V T + G Y D + +N Sbjct: 317 ALSALALCRAIGLSFAQLLHGLREYHGEPHRVEHVMTIA--GVEYYDDSKGTN 367 >gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704] Length = 457 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 83/378 (21%), Positives = 157/378 (41%), Gaps = 48/378 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ V DSR +Q ++FVAI G + H FIP I +GA ++ DFS + Sbjct: 26 REVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIPDTIEKGALCVISHEDLGDTDFSYILV 85 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +T ++D + + F ++ G +TG+ GK+S + + + +++ Sbjct: 86 ESTGQALLDIAKLYRDSFDVKVVG--------ITGSVGKTSTKEMIASVVAQK----YKV 133 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205 TI +F +N P I+ ++ GV H + RL + Sbjct: 134 --HKTIGNF--NNEWGLPLTIFELNEDHQVAILEMGVNHFG--------EMRRLSSVASP 181 Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H+++ +T++ K ++ +++ K+ II+ D A Sbjct: 182 DICVITNIGVAHLEFFKTREGILQEKSKMIQDM--KDGGTIIFNGDDDLLSQAGPIKGAT 239 Query: 265 CRVLSVGYQGKF-------IHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + +G +F + L+ C IH + + F+ + PLPG + NAL Sbjct: 240 PILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYS-------FECVVPLPGTHMISNAL 292 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375 A + + + S + +E L +PGR + T+ I +D + +N + M + Sbjct: 293 AGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKTDR---LIILDDCYNANPVSMKAAID 349 Query: 376 IRTITSGRIIVVFGCGGD 393 + + GR + V G G+ Sbjct: 350 VLDMAIGRKVAVLGNMGE 367 >gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid adding enzyme) [Neisseria meningitidis WUE 2594] Length = 445 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ Y+ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|306836495|ref|ZP_07469467.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens ATCC 49726] gi|304567629|gb|EFM43222.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens ATCC 49726] Length = 119 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 8/94 (8%) Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451 KRPIMG+ A AD+ +VTDDNPR+EDP IRA +I G E+G+R AI Sbjct: 1 KRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARQAAPDADIREQGSRARAIDE 60 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 ++ D ++V GKGHE +V GE+ + D Sbjct: 61 VVDWAQPGDAIIVVGKGHEVGQLV--GERTLHFD 92 >gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 453 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 44/373 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I++VS+D+R + +G +FVA+ G K D H + A+ GA A++VS + N Sbjct: 24 IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L + + + ++A+TG+SGK+SV I + G + G Sbjct: 75 VPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + + A+ G + D ++ + Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260 NL H++ + AK +F LP + AI+ AD K V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFSG-LPADGVAIVNADSNDFPHWQVMLNHKTVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A C + F V + + T+ + L PLPG + NAL AA Sbjct: 241 PQAACDI-------DFF-ASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAAS 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +++G V L +L VPGR + + G++ +D ++ +N S+ + + Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350 Query: 379 ITSGRIIVVFGCG 391 + R++VV G Sbjct: 351 MPGYRVMVVGDMG 363 >gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus pentosaceus ATCC 25745] Length = 460 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 161/386 (41%), Gaps = 38/386 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P W + + V DSR + G +FV I+G + DGH FI QA+ GA A + + + Sbjct: 17 YPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGAVATLWA-----E 70 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D ++ P ++V N + L A K ++A+TG++GK++ + + Sbjct: 71 DHQERRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLE-- 128 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + + + T ++F +N L P I L S+ V V + G + Sbjct: 129 --AEYNV--VKTKANF--NNELGVPITI-----LGMSSNTEVLVVEMGMDRPGQLHFLSE 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 ++ T +G HI++ +T++ +AKM + + L KE ++ D E +RA Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRERIADAKMEITDGL--KEDGCFVFNGDEPLLE--QRA 233 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNAL 316 + G + V A + T ++ + D P+ G++ V NAL Sbjct: 234 KDLNVEQYRFGLKAD----NDVSASDIQGTDTSTMFKTNLDEETTVTIPVLGDYNVTNAL 289 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + ID E L + R E++ T +G RI D Y + +L + Sbjct: 290 AAIAVGHKYHIDLKKEAEALVDFDLTKNRTEWL-TGKKGERILSDVYNSNPTAARAVLDS 348 Query: 376 IRTI-TSGRIIVVFG----CGGDRDQ 396 + T GR +VV G G + DQ Sbjct: 349 FANVNTEGRRLVVLGDMLELGENADQ 374 >gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella capsiferriformans ES-2] Length = 483 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 166/368 (45%), Gaps = 31/368 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I+AG +++A+ G K DG F QAI GA A+++ +A S + S + + I Sbjct: 26 VSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATAVLM-NADSFEARSLILNPQSSI 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +TR L A+ K ++A+TG++GK++V + + + + S + +T Sbjct: 85 LLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVKEMLASVLRSAAGSDDAV--LAT 142 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208 +F D I + L L++Q V +H +D + IA Sbjct: 143 KGNFNND--------IGMPLTLLQLNAQHRYAVIEMGMNH---PGEIDYLTRIACPNVAL 191 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N H++ + +A +AK +F L P S AII ADD ++ + R +L Sbjct: 192 INNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGS-AIINADDEFAP--LWRCLAGANSLL 248 Query: 269 SVGYQGKFIHLKKVCAIH-NKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLCIAI 325 G G H V A N + + V+ DF +PGE NAL IA+ Sbjct: 249 EFGLSG---HSDVVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNALAVTAAAIAL 305 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 + ++ L K V GR + +R G + +D + +N SL+ + + ++ R Sbjct: 306 NLSLESIVAGLSKFSGVAGRLQR--KPAREGAVLIDDTYNANPASLKAAIAVLAAMSGQR 363 Query: 384 IIVVFGCG 391 ++V+ G Sbjct: 364 VLVLGDMG 371 >gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 466 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 23/300 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N VS DSR I+ G ++ A+ G + DGH FI +AI +GA A+V S DF + + Sbjct: 27 NGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAAAVVCSK--DKIDFVKSFPDSV 84 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ ++T L FA K I +TG++GK++ + I R G + Sbjct: 85 SIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTKEILVSIFNRKGRT------ 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 S +F +NR+ P I+ L + Y + T S G + D + AG Sbjct: 139 LSNKGNF--NNRIGIPLSIFNLTSDIEYAVFEMGT------SLRGEIKILSDILNPDAGI 190 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H++ + + F K LF+ + KE+ I+ +D + +M +++ Sbjct: 191 ITNVGFSHLETFISPKGVFEEKKVLFDNV--KETGFIVINND--DEFLMTAPQYVSRKII 246 Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + K + NK I +G P G F V NAL A I G Sbjct: 247 AFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACAIGFGF 306 >gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria monocytogenes FSL F2-208] Length = 346 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 84/356 (23%), Positives = 146/356 (41%), Gaps = 63/356 (17%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +R+ I V D+R I++G +FV VGN DGH F+ QA GA A Q Sbjct: 34 FRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATF------WQKNVP 87 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P+++V++T L A++ + ++A+TG++GK++ + I + + Sbjct: 88 NPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVH 147 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 148 YTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 183 Query: 198 RLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ AK+ + L P S +IY + Sbjct: 184 EIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIY---PHE 238 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFP 305 + ++ N R L+ G K A ++ EG F + P Sbjct: 239 ETLLLGNINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 290 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + GE V+N + A IGI+ + L+ + R E++ T S G RI D Sbjct: 291 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILND 345 >gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Teredinibacter turnerae T7901] Length = 458 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 41/332 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R +Q G +FVA+ G DGH +I QAI +GA A+VV + + P Sbjct: 24 VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDTVQA--------EIAVPQ 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 VV +T + L A+ + ++ +TG+SGK+SV ++ +C+ Q GPT Sbjct: 76 WVVKDTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCR-------QAGPT-V 127 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 ++ +N + P + L L Q V S G + I+ N+ Sbjct: 128 ATAGNLNNHIGVP------QTLMRLEQQAFAIVEAGTSGFGEIAYLTSLIQPEVALVNNV 181 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H+ + A K ++ A+I DD Y++E + R N G + ++G+ Sbjct: 182 MPAHMAGFGSLDAIAQEKGDIYGG--SNLRCAVINLDDNYAQEFLAR--NGG--ITTIGF 235 Query: 273 QGKFIHLKKVCAIHN-------------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 I +K + + +EG F +PG+ V NAL AA Sbjct: 236 TASPIQYEKNSGVDTLIYGECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAA 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +A+G+ L+ + + + V GR + V T Sbjct: 296 SCAVALGVAHELIAKGVSQFQGVAGRMQRVST 327 >gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 485 Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 84/336 (25%), Positives = 130/336 (38%), Gaps = 24/336 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ + P+ I+ +S DSR +Q G F AI G DGH F AI GA +VV Sbjct: 10 LVAAMDGRPLGPMPDGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R PI+VV++ L + I+AVTG++GK++ + Sbjct: 70 AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + Q G + + AQ P+ LA+ + E + Sbjct: 126 RHVLQAVG----------KVHASAQSFNNHWGVPLTLARM-----PDDCDYAVFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + ++ T + H+ + + AK +FE L P E A++ DDA Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDA 229 Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 K + K AH AG V G + C +H + +T + G + PG Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 V N L G +G D V L L GR Sbjct: 290 HMVQNVLAVLGAAHLVGADLDKVASALADLSAERGR 325 >gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga neapolitana DSM 4359] Length = 427 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 95/404 (23%), Positives = 171/404 (42%), Gaps = 61/404 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ ++ G +FVA+ G + DGH FI +A+ +GA A++ A D I++V Sbjct: 12 NSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSD---------RIVLV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148 NT + L+ A P+ I+ +TG++GK++ + ++ +R G + + G Sbjct: 63 KNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEYG 122 Query: 149 -PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P S ++ + + L +++L S V+V Sbjct: 123 LPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAV-------------------- 162 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H+++ ++++ AK+ + + K+S + + DD ++ K+ V Sbjct: 163 -LLNVGSAHLEFFKSRENIMEAKLEIVKH-SKKDSAVVTFFDDG---DLRKKVPVLRENV 217 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEF---QVYNALVAAGLC 322 L G +G + L+ N TIS E + F F LPG + Q+ N +AA LC Sbjct: 218 LFFGTKGGDVVLEDWWYYENS---TIS-EYRMFGSSFTIKLPGFWNRGQLLN--LAASLC 271 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381 + + + + L L VPGRF G RI D Y + + +M ++ + Sbjct: 272 VMKVLGEKVDVLELSNLKAVPGRFNV--KEVEGVRIIDDTYNASPEAFQMAIEALLKF-P 328 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 GR V G G+ + ++GK LD D V P + Sbjct: 329 GRKFAVVGAMKELGEESKKFHEMLGK-QLDALDGVYVFSTEPEA 371 >gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurispirillum indicum S5] Length = 445 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 156/363 (42%), Gaps = 44/363 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q+G +F+A+ +DGH +I A +GA +V + D I + +LVV Sbjct: 33 DSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPA--DHQQLIDAGHALLVV 90 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +T L++ A+ + ++AVTG+SGK++V++ C R+ + PTS ++ Sbjct: 91 PDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSA-----CLRT------LFPTSAGTT 139 Query: 156 FAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P +P A + L G + A L Q ++ G T Sbjct: 140 GNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDALAE---LLQPQI-------GLIT 189 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI + A AK+ L + +I D +E++ RA VLSV Sbjct: 190 NVGSAHIGKLGSFAAILEAKLE-----LARHCSCLIV--DGDGQELLDRARQRHQDVLSV 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIG 326 G+ + + + + + P +F V N+L+A + +G Sbjct: 243 GFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGLKLG 302 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 +D A + L ++ + P R+E + RGG Y+ + SN SL L++ R+ Sbjct: 303 LDQAALQAGLRRVQLPPLRWEL---HRRGGNTYIFDCYNSNPGSLRAALEDFSHYPGYRV 359 Query: 385 IVV 387 V+ Sbjct: 360 AVL 362 >gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R] Length = 427 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 115/492 (23%), Positives = 213/492 (43%), Gaps = 80/492 (16%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 +L L+ K FP L + KI V DSR I G +F AI ++G+ ++ Sbjct: 3 RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAI----QNGNQYVQ 47 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A+ +GA ++V++ YS ++ ++ V+NT + A ++A+T Sbjct: 48 EALDKGA-SLVIADRYS--------GNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + I ++ FQ T+ ++ +N + P I L+ Sbjct: 99 GSNGKTTTKDIIYAILSKT----FQT--KKTLGNY--NNHIGLPFTI-----LNLEEKDE 145 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + SS G +D + IA G TN+G H+++ +T++ F AK EL Sbjct: 146 FAVLEMGMSSFG----EIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----EL 197 Query: 238 LP--KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 LP E I DD + K++ + VGY + + ++ K + + S Sbjct: 198 LPYLPEGCFISSGDDVFLKKI---------PAIHVGYDERNDY--RIFGYQKKDRRS-SF 245 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + D + PL G+ V NA + + IG+DS + ++L ++ + P RFE + Sbjct: 246 QLNDKQYEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIELSPMRFE---RSEYQ 302 Query: 356 GRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQG--KRPIMGKIALD 408 G Y++ A+ ++ + M L ++ T+ I V G G+++ K I I+ Sbjct: 303 GTKYINDAYNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCS 362 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 L I + PR K + IP + + E I+ ++ ++ VL+ A +G Sbjct: 363 LQAILLY---GPRM----KKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRG 415 Query: 469 HETVHIVTNGEK 480 + I+ EK Sbjct: 416 MKLEEIIEREEK 427 >gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium japonicum UT26S] Length = 458 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 167/389 (42%), Gaps = 58/389 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ +A QGA +VS TI + Sbjct: 24 VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSQ---------TI-AQ 73 Query: 90 TPILVVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSV--ASF--VQQIC----Q 138 +LV D+ +L +R+ GK ++ VTG+ GK+ A F + ++C Sbjct: 74 PHVLVPDSAAALEALGRTSRARMQGK----VVGVTGSVGKTGTKEALFHALDRVCPGEVH 129 Query: 139 RSGLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 RS + S+ +G ++S +++ + A L+ L+ Q HV++ Sbjct: 130 RS-VKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAALTRQVRPHVAI-------- 180 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 T + HI++ T++ AK +FE L P + I Y D + Sbjct: 181 -------------VTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPY-DSPHVAT 226 Query: 256 VMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + +A R+L+ G+ Q + V A VT ++ G + F PGE V Sbjct: 227 LYAKAEKHAARILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVS 286 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM- 371 NAL A+G D A L ++ +PGR + GG + +D ++ +N L M Sbjct: 287 NALAVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMA 346 Query: 372 -ILKNIRTITSGRIIVVFGCGGDRDQGKR 399 LK + + R I V GG R+ G R Sbjct: 347 ATLKQLGREQADRRIAVL--GGMRELGDR 373 >gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 453 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 177/413 (42%), Gaps = 39/413 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81 ++ E ++S+D+R I +F+A+ GN +G+ ++ +AI GA AI+ + L++ Sbjct: 18 IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + ++ V++ + L A K ++ +TG++GK+S V Sbjct: 78 ----LNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125 Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199 ++F G S + +N + P I+ L S V +E ++ D+ HRL Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFDEIHRL 177 Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + TN+G HI+Y +T++ K + + + I Y +D K + Sbjct: 178 TNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQK--VN 235 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316 H ++ +GY K+ ++ + + ++ G+ F + GE + NAL Sbjct: 236 EDHE--FKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 + + GI + L R EF+ N+ I D Y + +S++ L Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351 Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVTD---DNPRS 422 ++T + R I V G G GD + I+GK A+ ADI + T DN +S Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKS 404 >gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis 053442] gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis 053442] Length = 445 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ Y+ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus aureus subsp. aureus ST398] Length = 451 Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 81/371 (21%), Positives = 159/371 (42%), Gaps = 38/371 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +K NA C + V VC++ ++ IS + + P+ G+ + NA Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNEHYDLPILGKHNMKNAT 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A + +G+ ++ ++L+ + + R E + I Y + S+ + + Sbjct: 289 IAIAVGHELGLTYNIIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTL 348 Query: 377 RTITSGRIIVV 387 T+T RI+++ Sbjct: 349 STLTGRRILIL 359 >gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp. mediasiatica FSC147] Length = 452 Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 50/329 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA GA+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANGAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Q Sbjct: 73 IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVHFTQ--- 129 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 T+++ YL ++ L + V +EA ++ G + D I+ Sbjct: 130 -GTLNN-------------YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + LP++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKA-LPRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ A N I + +++D+ P G+ + N+++ Sbjct: 235 CSMTNPKADILVLDYR----------ATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A +A+G++ L++ + + GRF Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313 >gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 83/359 (23%), Positives = 150/359 (41%), Gaps = 57/359 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS+D+R IQ G ++V + G K DGH F+ A+ +GA A++ S + ++ Sbjct: 27 VHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKGASAVLWSET------EGSPPAD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142 P++VVD+T + L A R + ++ +TG++GK++ V ++ + G Sbjct: 81 VPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKDIVAALLATTYKVQKTEGN 140 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T+ +D + V + S+ G + + Sbjct: 141 LNNHIGVPLTLLRLEEDVEMAV--------------------VEMGMSNFGEIELLSNIA 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A TN+G H+ +++ AK+ + L K++ +Y D E + + Sbjct: 181 EPDAAIITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYNGD----EPLLASRV 234 Query: 263 AGC----RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 A VL+ G Y + +HL+ N TI + + F P+ G+ V Sbjct: 235 AHLPLPEHVLTFGQGNKNDYYPESVHLQA-----NGMMFTIR-QAANRSFFLPILGKHHV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 YNAL A + + V E L +L V R E + T G ++ A+ +N M Sbjct: 289 YNALAALAVARFFDVSWENVQEALSRLQVTRMRMEVIETEK--GWTVINDAYNANPTSM 345 >gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 86-028NP] gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 7P49H1] gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2846] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Clostridium botulinum H04402 065] Length = 462 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMSEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316 +G KF N + + E +FD L +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece sp. CCY0110] Length = 451 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 30/330 (9%) Query: 6 LIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 +I + P ++++ L + IN++++D+R I IF+A+ G K DGH FI AI Sbjct: 1 MILSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAI 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A+GA ++V S+ + + T I+V D + + A+ K I+ +TG+ Sbjct: 61 AKGAIGVIVDHEVSV----ISSKRITQIIVKDTLIAYQEI-ANWWRNKLTIPIIGITGSV 115 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + G T +++ +N + P + LS ++ Sbjct: 116 GKTTTKELIAAVLGVYGKVH------KTQANY--NNEIGVPKTL-----LSLTTNHDYAV 162 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + + G + G TN+G HI +++A AK L E +PK+S A Sbjct: 163 IEMAMRARGEIALLSQIARPTIGIITNVGTAHIGRLGSREAIAEAKCELLAE-MPKDSIA 221 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ DD E R + ++ G +G I + + Q + VEG DF Sbjct: 222 ILNHDDQRLMETAARIWQG--KTITYGLEGGDI----TGELLDNQ--ILRVEG--IDFPL 271 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 PLPG N L A + + +D L+ + Sbjct: 272 PLPGRHNALNYLAALAVTKQLNLDWNLLTQ 301 >gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 22.1-21] gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittII] gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R2866] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 133/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA+AQGA +VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVAQGAVTVVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus aegyptius ATCC 11116] Length = 457 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12] Length = 464 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 172/377 (45%), Gaps = 67/377 (17%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E I V DSR + AG +F AI ++G+ ++ +A+ +GA +IV++ Y Sbjct: 54 KELSIQNVVMDSRKVVAGSLFFAI----QNGNRYVSEALEKGA-SIVIADHY-------- 100 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ V +T F+ A+ ++A+TG++GK++ V I ++ Sbjct: 101 FEPHERVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTF---- 156 Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 PT T+ ++ +N + P I L+ + + SS G +D + Sbjct: 157 ---PTKKTLGNY--NNHIGLPFTI-----LNLEEGDEFAVLEMGMSSFG----EIDALGK 202 Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEVMK 258 IA G TN+G H+++ +T++ F AK ELLP + I DD + K+V Sbjct: 203 IARPDYGIITNIGDSHLEFLKTRENVFKAKT----ELLPYLPQGHFITSGDDIFLKKV-- 256 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNALV 317 +G + VGY+ + ++ + K+++T V GKD++ L G+ V NA + Sbjct: 257 ----SG---VHVGYEEGNDY--RIVSYRKKERMTSFQVRGKDYEIC--LEGKHNVMNAAM 305 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMI-- 372 L IG+ + +L ++ + P RFE+ GT Y++ A+ ++ + M Sbjct: 306 GIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE------YINDAYNASPISMFAA 359 Query: 373 LKNIRTITSGRIIVVFG 389 L ++ + + R V G Sbjct: 360 LDSLEEMKAERKFAVLG 376 >gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pediococcus acidilactici DSM 20284] Length = 459 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 92/383 (24%), Positives = 160/383 (41%), Gaps = 32/383 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P QW E + V DSR + G +FV I G + DGH FI QAI GA A + + + Sbjct: 17 YPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGAVATLWA-----K 70 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D T ++ P + V++ L A K ++A+TG++GK++ + Sbjct: 71 DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLA-- 128 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + F + T ++F +N + P I L ++ V V + G + Sbjct: 129 --TEFNV--VKTEANF--NNEIGVPITI-----LGMNANTEVLVVELGMDRPGQLHFLSE 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 ++ T +G HI++ +T+ +AKM + + L KE IY D + +RA Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL--KEDGCFIY--DGDEPLLAERA 233 Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + G + + + V + I+++ + + P+ GE+ V NAL A Sbjct: 234 KAVDVEQRTFGMKNENDVFASDVAGTDTETSFKINLD-PEVEVKLPIIGEYNVKNALAAI 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI-R 377 + + A L ++ R E++ +G RI D Y + + +L + Sbjct: 293 TVGDRYHVGVADSARALADFNLTKNRTEWL-KGRQGERILSDVYNSNPTAAKAVLNSFAH 351 Query: 378 TITSGRIIVVFG----CGGDRDQ 396 T +GR VV G G + DQ Sbjct: 352 TKKTGRRFVVLGDMLELGENADQ 374 >gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 317 str. F0108] Length = 825 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 36/357 (10%) Query: 27 ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 E I+ V +DSR + +F A+ N+ DGH +I + +G VV + +A Sbjct: 21 EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRGVRCFVVEEVPAR---AA 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + L V +TR+ L A R I+ +TG++GK+ V ++ Q L S Sbjct: 78 ELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVKEWLYQ------LLS 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 Q+ T + S+ ++++ P ++L + S L G+ + S G Q D IK Sbjct: 132 PQMVVTRSPRSY--NSQIGVPLSVWLLNSHSQL---GIFEAGI--SQKGEMQALHDIIKP 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263 TN+G H + T + K+RLFE + ++Y ADD V+ +N Sbjct: 185 NIAVLTNIGSAHEENFATPEEKCREKLRLFEG-----AEVMVYNADDDLVTRVLNETNNK 239 Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQVYNALV 317 G R+ S + + K+ +KQ ++ G+ + P + V N++V Sbjct: 240 GERLAWSTKSPNAAMFVTKI----DKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVV 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 A +C+ +G+D+ + + + +L V R E V G + D Y NSL++ L Sbjct: 296 CATICLHVGLDAHTIDKRMRRLEPVAMRLE-VKEGLNGCTLINDSYNSDINSLDIAL 351 >gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittEE] Length = 457 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA+AQG+ A+VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVAQGSVAVVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE + NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter sp. 638] gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Enterobacter sp. 638] Length = 452 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q ++ ++ V++D+R I G +FVA+ G + D H F QA GA A++VS + Sbjct: 17 LQGQDLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKENGAGALLVSRKLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P LVV +TR+ A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G +N + P + L + + A+ G +D Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTEEHEYAVIELGANHQGEIAWTVDLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + + AK ++ L P+ AI+ AD+ S Sbjct: 175 RPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGGL-PENGIAIMNADNNDWLNWQNIIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + + NA + + IH+ + + T+ D D L PLPG + Sbjct: 234 RKTWRFSPNAA----NSDFSATNIHVTS-----HGTEFTLKTPTGDVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +A+G + L L VPGR Sbjct: 285 NALAAAALSMAVGATHDAIKTGLLNLKAVPGRL 317 >gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12] Length = 426 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 171/379 (45%), Gaps = 67/379 (17%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +E I V DSR + AG +F AI ++G+ ++ +A+ +GA +IV++ Y Sbjct: 14 HLKELSIQNVVMDSRKVVAGSLFFAI----QNGNRYVSEALEKGA-SIVIADHY------ 62 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + ++ V +T F+ A+ ++A+TG++GK++ V I ++ Sbjct: 63 --FEPHERVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTKDIVYAILSKTF-- 118 Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 PT T+ ++ +N + P I L+ + + SS G +D + Sbjct: 119 -----PTKKTLGNY--NNHIGLPFTI-----LNLEEGDEFAVLEMGMSSFG----EIDAL 162 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP--KESPAIIYADDAYSKEV 256 IA G TN+G H+++ +T++ F AK ELLP + I DD + K+V Sbjct: 163 GKIARPDYGIITNIGDSHLEFLKTRENVFKAKT----ELLPYLPQGHFITSGDDIFLKKV 218 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQVYNA 315 +G V GY+ + ++ + K+++T V GKD++ L G+ V NA Sbjct: 219 ------SGVHV---GYEEGNDY--RIVSYRKKERMTSFQVRGKDYEIC--LEGKHNVMNA 265 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 + L IG+ + +L ++ + P RFE+ GT Y++ A+ ++ + M Sbjct: 266 AMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE------YINDAYNASPISMF 319 Query: 373 --LKNIRTITSGRIIVVFG 389 L ++ + + R V G Sbjct: 320 AALDSLEEMKAERKFAVLG 338 >gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 39/304 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ KI VS DSR I+ +++ IVG K DG +FI + G+ A ++ ++F Sbjct: 21 EYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLID-----KNFK 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQI 136 N P ++VD+T+K L A K I+A+TG++GK+ SV S ++ Sbjct: 76 IPKSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTSKNIIHSVLSEKYKV 135 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG TI F++D + + + + +SV + D Sbjct: 136 EKTHGNLNNEIGLPLTILDFSEDTDI----------GVVEMGTDDFGEISVLTNIARPDM 185 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE 255 + TN+G H+ +T++ AK+ + E L K+ +Y DD K+ Sbjct: 186 AMI----------TNIGDAHLLKLKTREGIAKAKLEILEGL--KDDGIFLYNGDDEILKK 233 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 V+ +++ + +S G G + K + S KD ++ PL G QVYN Sbjct: 234 VLP-SYDIKQKTISFG-MGDKVDFKVEAREYTSTSTNFSY--KDENYSVPLLGSHQVYNG 289 Query: 316 LVAA 319 +A Sbjct: 290 ALAV 293 >gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Coprobacillus sp. 29_1] Length = 449 Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/332 (21%), Positives = 137/332 (41%), Gaps = 44/332 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +N + D+R I++G +++ +VG DGH +I QA GA +I+ + D Sbjct: 20 EYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGASSIITAHKVHYPD----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++V +T + +S A L ++ +TG+ GK+S + + S + Sbjct: 75 ---KNVILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMIYSVV------STK 125 Query: 147 IGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ ++ +N + P I L + G+ H+ L Q L + Sbjct: 126 YKTLKTLGNY--NNHIGLPLTILRLQNEEVMILEMGMNHL---GEIEHLTQIALPDV--- 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVM 257 + TN+G HI +++ AKM + L K ++ DD A + ++ Sbjct: 178 -AAITNIGTAHIGELGSREKILQAKMEIVNGL--KSDGTLVINDDNDMLHTVNAENYHMI 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + N C + ++ + + I +G+ + P+ GE VYNAL+ Sbjct: 235 RVGQNEDCDLKAIDVELRL----------EDSYFDIDYQGQRYHVHVPVSGEHFVYNALI 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 A + +++ ID L + +E + R + + Sbjct: 285 AIAIGLSLDIDMNLCIAGVEHFELTKNRMDMI 316 >gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Listeria grayi DSM 20601] Length = 455 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 83/362 (22%), Positives = 150/362 (41%), Gaps = 50/362 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E + + D+R I+AG +FV VG DGH F+ QA GA S+A+ +D Sbjct: 20 FDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA-----SAAFWQKDVP- 73 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS---- 140 ++ P++ VD+T L A+ + ++AVTG++GK++ + + + + Sbjct: 74 NPPADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDILSGMLRETFRVH 133 Query: 141 ---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG TI + +D + + G+ H +H Sbjct: 134 RTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RH 169 Query: 198 RLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 ++ + IA TN+G HI+Y +++ NAK + L K IY D Sbjct: 170 EIEVLSQIAQPDIAIITNIGEAHIEYLGSREEIANAKFEIVTGL--KADGLFIYPGD--- 224 Query: 254 KEVMKRAHNA-GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E + H A R ++ G + + + + D +F P+ GE V Sbjct: 225 -EPLLTEHTALPARSVTFGRTDQATIFATTIKTSEEGTTFTTNQTADREFYVPIIGEHNV 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 +N++ A +G++ + L + R E++ T +G RI D Y + +L+ Sbjct: 284 FNSMAAMLAAFELGVEPETIQTALRHIDRSKSRLEWL-TTPKGSRILNDAYNSSPTALKT 342 Query: 372 IL 373 +L Sbjct: 343 VL 344 >gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii OhILAs] gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii OhILAs] Length = 465 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 43/338 (12%) Query: 65 AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPEN 116 A GAE + + +++D ++A I+ + P + R + + + G K+ + Sbjct: 54 AHGAEIFIGHNEDNVKDPDLVVYTAAIKEHNPERMAAKERNIPQIDRAEMLGIIMKNYKK 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKA 173 +AV+G+ GK++ S + I + S L PT + + N S ++ +A Sbjct: 114 AIAVSGSHGKTTTTSLISLIMEYSNLD-----PTIMVGGELDEIGGNIKIGNSEHFITEA 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y+ S L + GI L N+ DH+DY + + R Sbjct: 169 CEYVES-------------FLKFYPFIGIIL------NIDEDHLDYFKDLN-HIKEAFRK 208 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--V 291 F L+P+E I DDA +E++ H+ C +++ G + + + N Sbjct: 209 FINLIPQEGFLIANGDDANVQEIL---HSIECNLITYGLDSSNTFVARNISFTNDGYPIF 265 Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T+ +G+ F +PG+ +YNAL + +G++ + + H++K + RF+ +G Sbjct: 266 TVDFKGESMGTFELNIPGKHNIYNALASIATAYLLGVEPSEIQNHIKKFRGIHRRFDILG 325 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +G +I DYAH + L+ + +I VF Sbjct: 326 E-VKGCKIVDDYAHHPVEISATLEAAKNYPHNKIWCVF 362 >gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3047] Length = 457 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp. novicida GA99-3549] gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549] Length = 453 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 138/329 (41%), Gaps = 50/329 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S ++ +FVAIV N+ DGH FIP AIA A+AI+VS L + Sbjct: 23 IQTVAINSNEVRQDCLFVAIVANR-DGHEFIPSAIANRAKAILVSKKQGL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +V NT K L A I+++TG+ GK+SV + + + Sbjct: 73 IPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERKVH------ 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSH--GLDQHRLDGIKLIA 206 F Q N YL ++ L + V +EA ++ G + D I+ Sbjct: 127 ------FTQGNLNN-----YLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADIIQPNI 175 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVM 257 TN+G H++ +T K L + L P++ I+ DD K++ Sbjct: 176 AMITNVGACHLENLKTLDGVMIEKGELLKAL-PRDGFCIVNLDDERIPNYAKLLECKKIS 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N +L + Y+ N V I + +++D+ P G+ ++N+++ Sbjct: 235 CSMTNPKADILVLDYR----------VTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVL 284 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A +A+G++ L++ + + GRF Sbjct: 285 AIASVVAVGLEPKDFLQNTQNIKNYKGRF 313 >gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus pseudintermedius ED99] Length = 454 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 168/379 (44%), Gaps = 50/379 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + +I V+ DSRHIQ G +F+ G DGH + QA+ GA A + +D + Sbjct: 20 QYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGA-----TFFQRDST 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGL 142 T +N P++ V+NT L A + Y +H ++AVTG++GK++ ++ + SG Sbjct: 75 LTAPTNGPVVFVENTLTALQQLA-KAYLQHVAPTVIAVTGSNGKTTTKDMLENVL--SG- 130 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 F++ T +N + P L+ L T VS+ E G H ++ Sbjct: 131 -KFRVQKTQG----NYNNEIGMP--------LTILELNEDTEVSILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK-- 254 + IA TN+G H+ +++ AK + L K IY D+ K Sbjct: 176 LSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGL--KSEGYFIYDGDEPLLKPH 233 Query: 255 -EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 E + AH +SVG K ++ H ++ +T +V D + P+ GE + Sbjct: 234 VETLTSAHQ-----VSVGLSAKN-DMQCQMVSHLEEGITFTV-NDDVTYTIPILGEHNMR 286 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372 NA +A + +G+ + + L L + R + F+ N G + ++ A+ ++ M Sbjct: 287 NATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPN---GAMVINDAYNASPTSMK 343 Query: 373 LKNIRTIT--SGRIIVVFG 389 I T++ G I+V G Sbjct: 344 AA-IDTLSHMKGETILVLG 361 >gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88] gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88] Length = 456 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 142/345 (41%), Gaps = 48/345 (13%) Query: 60 IPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILV--VDNTRKFLSL--FASRLY 110 I + I GAE + A ++++ ++A + + P L + N K ++ F L Sbjct: 47 IDKLINLGAEIYIGHKAENIKNVDLIVYTAAVSEDNPELTKALTNNIKIMNRAEFLGYLM 106 Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSP 167 H NI AV+GT GK++ S + I + L PT + + N T S Sbjct: 107 DGHKYNI-AVSGTHGKTTTTSMMSHITVNANLD-----PTILVGGELNIINGNVRTGKSE 160 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 +L +A Y S L I G N+ DH+DY++ Sbjct: 161 YFLTEACEYKES------------------FLKFFPYI-GVILNIDADHLDYYKDINHIK 201 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 NA + F L+PK+ I A+D +++K N C +++ G I K + N Sbjct: 202 NAFSK-FANLIPKDGYLIACAEDENINDIIK---NIDCTIITYGLNKGDIQAKNI-TFDN 256 Query: 288 KQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 K + V K+ LF + PG + V NAL + + A+ ID +++ LE H Sbjct: 257 KGCASFDVI-KNSSVLFSVKLNVPGSYNVLNALASICVSFALNIDKESIIKGLESFHGTH 315 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE G + I DYAH ++ L + S RI+ VF Sbjct: 316 RRFELKGVRNDVTVI-EDYAHHPTEIKATLSAAKNYPSNRILCVF 359 >gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia solanacearum CMR15] Length = 485 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 25/378 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS----LQDF 82 + I V++DSR + G +FVA++G + D H F+P +A+GA A++VS + L D Sbjct: 27 DAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVLVSRRLADMPDLPDL 86 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 S +L V +TR L A+ + P ++AVTG++GK++V + S + Sbjct: 87 SGVA-----VLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEMI------SAV 135 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +G + +++ N + I L L L++Q V +H + L I Sbjct: 136 FACAVGEAARLATAGNLN-----NDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLAAI 190 Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKR 259 + N R+H ++ A+ LP + A+ D A + + R Sbjct: 191 AQPTVALINNAQREHQEF-MVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYAPLWR 249 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A RVL G +G + V N Q++ + F F PL G NAL A Sbjct: 250 AAAGTRRVLDFGIEGGAVS-AAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNALAAT 308 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A GI ++ + L V GR + + G I Y +S+ + + T+ Sbjct: 309 ACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAAIDALATL 368 Query: 380 TSGRIIVVFGCGGDRDQG 397 + R +V+ G QG Sbjct: 369 PAPRWLVLGDMGEVGTQG 386 >gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus coagulans 36D1] Length = 458 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 91/383 (23%), Positives = 155/383 (40%), Gaps = 53/383 (13%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q E ++ V DSR I+ G ++V + G DGH ++ A +GA +A Q Sbjct: 21 LQHNETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGA------AASLWQKD 74 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC----- 137 +N P+L+V++T K L + ++ +TG++GK++ V + Sbjct: 75 VPNPPANVPLLIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFK 134 Query: 138 --QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGL 194 + G + G T+ S +D + AK +S+L+S V++ Sbjct: 135 VQKTEGNFNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAI------- 187 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 TN+G HI +++A +AK+ + E LP+ I D+ + Sbjct: 188 --------------ITNIGEAHIQNLGSREAIADAKLEITEG-LPENGLLIYMGDEPLLQ 232 Query: 255 EVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGE 309 E R N G R + G H + + KQ+ + S D DF P+ GE Sbjct: 233 E---RVPNITGIRTKTFGKG----HGNDLYPVEWKQETSGSTFRTNASGDIDFYLPVLGE 285 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVD-YAHTSN 367 + V N+L A G+ + L K + R E G N G +I D Y + Sbjct: 286 YNVINSLAAILAGREFGMPFEEIRAGLGKTRLSAMRMEMADGIN--GSKIINDAYNASPT 343 Query: 368 SLEMILKNIRTIT-SGRIIVVFG 389 S+ ++ + +GR I+V G Sbjct: 344 SMRAAIRLVEQFEGTGRKILVLG 366 >gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271] gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271] Length = 875 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 98/385 (25%), Positives = 155/385 (40%), Gaps = 55/385 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+AVTGT+GK++V + ++ + ++G TS+ F D L T A Sbjct: 482 IIAVTGTNGKTTVVRMINKVLLEN---MVRVGMTSSEGVFINDKLLVTGDMTGPQSAQIV 538 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235 L V +E + G+ + L TN+ DH+ + + AK++ L Sbjct: 539 LRHPDVQAAVLETARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKMLVA 598 Query: 236 ELLPKESPAIIYADDAYSKEVMKR------------AHNAGCRVLSVGYQGKFIH----- 278 E + K ++ ADD KR A+ C+ +++G G F+ Sbjct: 599 ERVNKYGYVVLNADDPIVAGFDKRTEAKVIYFSLDPANRKLCKHIALGGTGIFVDKNQIK 658 Query: 279 ------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++++C I N + ++ GK + + N L A G C A+G ++ + Sbjct: 659 LGQGFDVQQICKIQN---IPLTWSGK---------AKHNIENILAAIGACWALGYSASQM 706 Query: 333 LEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + L+K GR E+ N G I +DYAH L+ + +R I RII Sbjct: 707 RKSLKKFGSENKDNYGRLEYYEVN--GVTIILDYAHNCAGLKEAISTLRQIKKRRIIGCI 764 Query: 389 GCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG- 443 G GDR +IA DI I D R +I AEI+H GF EK Sbjct: 765 GLPGDRRNEMVKKYARIAAQGFDDIFIKEDLCKRGRQTGEI-AEILHNELIKAGFQEKNL 823 Query: 444 ----NRIEAIRTAIEMLNKQDVLVV 464 + E+ R AI D++VV Sbjct: 824 KKVLDEKESFRQAISQAEPGDIVVV 848 >gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X514] Length = 460 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 43/372 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85 K+ +S+DSR ++ +F+ + G K DG F+ AI +GA A++ + + L+DFS Sbjct: 24 KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V+ T + L AS K +AVTG+SGK++ + QI + + Sbjct: 84 ------VIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 133 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ T +F +N + P I+ + ++ VE +G + R +K I Sbjct: 134 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIR--RLKNI 180 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A FTN+G HI+ +++ AK L E +E+ ++ ADD + K Sbjct: 181 AEPQVAVFTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPL 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDF--DFLFPLPGEFQVYNALVA 318 + G + I K C I +++ + +++ K+ + +PG VYN+L A Sbjct: 237 QYSSKYYRYGIKSGEI---KACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 293 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 + + GI+ + E L+ PG+ +I D Y +S++ L +R Sbjct: 294 ICVGLEFGINVEDMAEALKDFQ--PGKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 351 Query: 378 TITSGRIIVVFG 389 + + R I V G Sbjct: 352 DLPAKRKIAVLG 363 >gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU121] Length = 453 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 163/379 (43%), Gaps = 49/379 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ R I V+ DSR I+ +F+ G DGH F+ QA+ GA A ++ +D S Sbjct: 20 QYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGA-----SFYQKDVS 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + PI+ VD+T + L A ++AVTG++GK++ ++ + + Sbjct: 75 LSENIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLN----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTILDLDKDTDISILEMGMSGF--HEIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L P + IY D+ K + Sbjct: 177 STIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGLKP--NGTFIYDGDEPLLKPHV 234 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEF 310 ++ A C +S+G QG + VC+++ + I EG F + P+ G Sbjct: 235 EQIQQANC--ISIGLEQGNSL----VCSVNEE----IDTEGIAFTINHQQQYELPILGIH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 + NA +A + +G+ + +++++ + R E T + I Y + S++ Sbjct: 285 NMKNAAIAIAIGQELGLSYETIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMK 344 Query: 371 MILKNIRTITSGRIIVVFG 389 + + + +GR I+V G Sbjct: 345 AAIDTLSNM-NGRKIIVLG 362 >gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC 27560] Length = 452 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 45/397 (11%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++++ ++ + N + + + ++I V DSR I+ G++++ VG + DGH FIPQ Sbjct: 1 MKNMTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 +GA + S +D + P + V++ L A + I+ +TG Sbjct: 61 VFDKGALCTL-----SEKDLN---NPKGPYIKVESVATALKDIAEFYRKQLSCKIIGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + F++ T +N + P I L V Sbjct: 113 SVGKTSTKEIIASVLEE----KFKVLKTEG----NYNNEIGEPLTI-----LKIRDEHEV 159 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S + HRL + + TN+G H++ + F AK +F + K+ Sbjct: 160 AVIEMGISDFE-EMHRLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMF-DYASKD 217 Query: 242 SPAIIYADD---AYSKEVMKRAH-----NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ DD + KEV A + V+++ Y+ I K V I Sbjct: 218 CFVVLNGDDDKLSNVKEVNGHAPVFFGIDTDRDVMAIKYESLGIQGTK---------VKI 268 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 K+ D + P+PG +YNA+ A + G+ + + L + GR TN Sbjct: 269 KYFDKELDTVIPIPGYHMIYNAMAAVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTTN- 327 Query: 354 RGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389 G +D + +N + M N+ + +GR + + G Sbjct: 328 --GITVIDDCYNANPMSMKASINVLSQANGRKVAILG 362 >gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC 17025] gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC 17025] Length = 1279 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 46/332 (13%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +A+ A+ +V S A I V R L A RL + V G+ Sbjct: 61 LARAADCVVASPAIPETHVERRAARRAGIPVKTRARMLAELIADRL-------TICVAGS 113 Query: 124 SGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDN----RLTTPSPIYLAKALSYL 177 GKS+V + + I +G F +G +SFA RL P ++ +A Sbjct: 114 HGKSTVTAMLIHILSAAGKDDFGYMLG-----ASFADPGIVPARLGAPDAPFVTEA---- 164 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +HG H L ++ TNL DH D++ A F Sbjct: 165 -----------CEAHGALAHWLPSHAIL----TNLDDDHADHYGGPSGLRRA-FSAFLSR 208 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP E A+ DD ++++ A C L+ G++ + L+ V A T+ + G Sbjct: 209 LPPEGRAVACGDDLDVVDILREAR---CAALTYGFRDENA-LRAVQA--GDGSATVFLHG 262 Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L +PG + NAL A G+ + +GI L H + R +GT S+ Sbjct: 263 TELGALSLAVPGRHNLLNALAALGMALTLGIGFRTATGALADFHGIARRLSRIGTGSQ-P 321 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RI+ D+AH + + +R T GR+I + Sbjct: 322 RIFDDFAHHPTEIAASIAVLRETTQGRLIAIL 353 >gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio sp. 3_1_syn3] Length = 465 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 156/369 (42%), Gaps = 48/369 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + G +FV + G + DGH F +A+ QGA A++ S L D +A P+ Sbjct: 5 VVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASR--PLPDVAA------PV 56 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V++T + L A+ GK ++ VTGT+GK+S+ + Q+ G + Sbjct: 57 LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRG--------KTA 108 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EAS-SHGLDQHRLDG-IKLIAGSF 209 ++ +N++ P + L++ G V EA SH D L I+ G Sbjct: 109 RNALNHNNQIGMPCTV--------LNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLI 160 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268 N+G H + + ++ K RL L + ++ AD Y V + A A R Sbjct: 161 LNVGPGHTEGLGDRGVAWH-KARLLAH-LAQGGLGLVSAD--YPDLVREAGATGAKLRFF 216 Query: 269 SVG-----YQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 S G Y+ ++ + + + ++G D + P G + N++ A Sbjct: 217 SAGAHEVEYRADYVGPATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAA 276 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEM--ILKNIR 377 +G+ A + E L + + P RF E VG +D + +N L M +L+ Sbjct: 277 AHLLGLSPAEIAEGLGRAQLPPQRFNRERVGAWE-----IIDDTYNANPLSMRRMLETAA 331 Query: 378 TITSGRIIV 386 GR V Sbjct: 332 GQARGRAFV 340 >gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Haemophilus influenzae F3031] gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae F3031] Length = 457 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae NT127] Length = 457 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q+ S+ + Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE + NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|18311195|ref|NP_563129.1| cyanophycin synthetase [Clostridium perfringens str. 13] gi|18145878|dbj|BAB81919.1| cyanophycin synthetase [Clostridium perfringens str. 13] Length = 874 Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 171/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + L + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DYAH + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYAHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittGG] Length = 457 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 135/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE + NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGAKLADVKAGLEQRSQVKGRL 319 >gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X561] gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter sp. X513] gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 43/372 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85 K+ +S+DSR ++ +F+ + G K DG F+ AI +GA A++ + + L+DFS Sbjct: 25 KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGASAVITARLDNVECLKDFSVN 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V+ T + L AS K +AVTG+SGK++ + QI + + Sbjct: 85 ------VIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KY 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ T +F +N + P I+ + ++ VE +G + R +K I Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIFNLEDTHQIA-------VVEMGMNGFGEIR--RLKNI 181 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A FTN+G HI+ +++ AK L E +E+ ++ ADD + K Sbjct: 182 AEPQVAVFTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPL 237 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDF--DFLFPLPGEFQVYNALVA 318 + G + I K C I +++ + +++ K+ + +PG VYN+L A Sbjct: 238 QYSSKYYRYGIKSGEI---KACDIEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 + + GI+ + E L+ PG+ +I D Y +S++ L +R Sbjct: 295 ICVGLEFGINVEDMAEALKDFQ--PGKMRLNIIKIGDIKIIDDVYNANPDSMKAALSVLR 352 Query: 378 TITSGRIIVVFG 389 + + R I V G Sbjct: 353 DLPAKRKIAVLG 364 >gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Listeria monocytogenes LO28] Length = 178 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 13/183 (7%) Query: 13 ELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+ + +F + E +I+ ++ DSR ++ G +F+ I G DGH F +A+ GA AI Sbjct: 5 ELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELGAVAI 64 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129 + + + P++ V ++++ +++ A YG + ++ +TGT+GK++V Sbjct: 65 IAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115 Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + V+QI + +G + IG I + + TTP + L + + GV+ +E Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175 Query: 189 ASS 191 SS Sbjct: 176 VSS 178 >gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC 14672] gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC 14672] Length = 476 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 26/229 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA VG + DGH F + + GA A++ S + P Sbjct: 31 VVRDSREAGPGSLFVAFVGERVDGHDFAARVVEAGAAAVLASRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV++ + L A + G+ ++A+TG++GK+S + Q+ QR G + F G + Sbjct: 80 IVVEDVQAALGALARHVVGRLGTTLVALTGSAGKTSTKDLIAQVLQRHGPTVFTPGSLNN 139 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 T +L + + ++G+ H+ GL R+ G N+ Sbjct: 140 EIGLPLTALTATEETKFL---VLEMGARGIGHIRYLT---GLTPPRV-------GLVLNV 186 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259 G HI ++ AK L E L P E AI+ ADD + + R Sbjct: 187 GSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAMASR 235 >gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 453 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 176/413 (42%), Gaps = 39/413 (9%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81 ++ E ++S+D+R I +F+A+ GN +G+ ++ +AI GA AI+ + L++ Sbjct: 18 IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + ++ V + + L A K ++ +TG++GK+S V Sbjct: 78 ----LNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125 Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199 ++F G S + +N + P I+ L S V +E ++ D+ HRL Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFDEIHRL 177 Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + TN+G HI+Y +T++ K + + + I Y +D K + Sbjct: 178 TNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYENDMLQK--VN 235 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316 H ++ +GY K+ ++ + + ++ G+ F + GE + NAL Sbjct: 236 EDHE--FKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 + + GI + L R EF+ N+ I D Y + +S++ L Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351 Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVTD---DNPRS 422 ++T + R I V G G GD + I+GK A+ ADI + T DN +S Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKADIILTTGEFRDNYKS 404 >gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium beijerinckii NCIMB 8052] Length = 450 Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 90/402 (22%), Positives = 178/402 (44%), Gaps = 48/402 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA-YSLQDFSATIRSN 89 N++S+D+R IQ +F+A+ G +G+ + QAI +GA I++ + +++ +++ Sbjct: 26 NKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKGASIIIIDDVKFKIEE----LKNR 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ V +T++ L A K ++ +TG++GK+S V ++F G Sbjct: 82 GTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTKDLV---------AAFLSGK 132 Query: 150 TSTISSFAQ-DNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IA 206 + +N + P I+ L+K + + + S+ G + ++L I L Sbjct: 133 YKVFKTQGNFNNEIGLPLMIFELSKDYD------IAVLEMGMSNFG-EINKLASIALPDV 185 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G+ TN+G HI+Y +T++ KM + + ++ I+ ++ K +++ C Sbjct: 186 GAITNIGVAHIEYLKTRENILKEKMSI-TDFFENKNSLIVNCENDMLKTIVE------CD 238 Query: 267 VLS---VGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + VGY + K + N ++ + +++ F + GE V NAL+ Sbjct: 239 KFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIG--- 295 Query: 322 CIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 I I + L E +EK + R E + + + I Y +S++ L+ ++ Sbjct: 296 -IQIARNFGLTFEEMEKGLGNFNATSMRLEVINKD-KFTIINDSYNANPDSMKAALEVLK 353 Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 + R I V G GD + +G+ A D ADI + T Sbjct: 354 NYSGSRKIAVLGTMGELGDYAEEAHIQVGEFAKDKADILLTT 395 >gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 518 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 147/370 (39%), Gaps = 64/370 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84 DSR I G +FVA+ G DGH F AIAQGA A+++ A + ++ Sbjct: 34 DSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLAAKDVGVAAVIMPKAAKREGDNS 93 Query: 85 TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + +N P VV K S AS L +H +I+ +TG++GK+S V + + Sbjct: 94 GLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIVGITGSAGKTSTKDLVASVLSAA 153 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHGLD 195 G + + P + +N L P + ++ +S++G+ H++ Sbjct: 154 GQT---VAPPGSF-----NNELGHPYTVLRCTESTKFLVAEMSARGIGHIA--------- 196 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAY 252 H G N+G H+ +++ AK L E LP + AI+ ADD Sbjct: 197 -HLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEA-LPSAAEGGVAILNADDPL 254 Query: 253 SKEVMKRAHNAGCRVLS-------VGYQGKFIHLKKVC----AIHNKQQVTISVEGKDFD 301 + R RV++ Y I L V +H+ VE F Sbjct: 255 VAGMAPRTR---ARVVTFSGQHGAADYYATDISLDDVTRASFTLHSPHNEPQRVELNVF- 310 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 G QV NAL AA + I GID+A V L H G V T + G + D Sbjct: 311 ------GAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADGVTVIND 364 Query: 362 YAHTSNSLEM 371 A+ +N M Sbjct: 365 -AYNANPDSM 373 >gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thioalkalivibrio sp. HL-EbGR7] Length = 458 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 154/374 (41%), Gaps = 65/374 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R +Q G +FVA+ G DGH F+ + A ++VS + + P Sbjct: 27 VSTDTRSLQHGQLFVALTGPTYDGHAFVSDDLP--AAGVMVSR---------LLPTRLPQ 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGLSS 144 ++VD+TR L A P +LA+TG++GK++V + I + R L++ Sbjct: 76 VLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVKEMLSAIAREHAPTLATRGNLNN 135 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T+ A+++R V + A+ HG + + Sbjct: 136 -DIGVPLTLLEMARNHRYAV--------------------VEMGANHHGEIAYLTSLARP 174 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN G H++ + + AK ++ L P + A+I ADD Y+ N G Sbjct: 175 DVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGP-DGVAVINADDIYAD--YWYGLNPG 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 RV+S G L V + + Q + + + G+ PG NAL AA Sbjct: 232 RRVISFG-------LDHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRHNALNALAAAA 284 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + I +L L ++H V GR V RGG + +D ++ +N T Sbjct: 285 AALGAEIPEEAILRGLARVHPVSGR--LVAVPGRGGALLLDDSYNANPAS---------T 333 Query: 381 SGRIIVVFGCGGDR 394 + V+ G GG+R Sbjct: 334 RAALEVLSGHGGER 347 >gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 459 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 41/305 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ KI VS DSR I+ +++ IVG K DG +FI + G+ A ++ ++F Sbjct: 21 EYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQNAGSPAFLID-----KNFK 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS-------SVASFVQQ 135 N P ++VD+T+K L A R Y K + I+A+TG++GK+ SV S + Sbjct: 76 IPKSINIPYIIVDDTQKALRDLA-RAYRKELDIKIIAITGSNGKTTSKNIIHSVLSEKYK 134 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + + G + +IG TI F++D + + + + +SV + D Sbjct: 135 VEKTHGNLNNEIGVPLTILDFSEDTDI----------GVVEMGTDDFGEISVLTNIARPD 184 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK 254 + TN+G H+ +T++ AK+ + E L K+ +Y DD K Sbjct: 185 MAMI----------TNIGDAHLLKLKTREGIAKAKLEILEGL--KDDGIFLYNGDDEILK 232 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +V+ ++ + +S G G + K + S KD ++ PL G QVYN Sbjct: 233 KVLP-SYEIKQKTISFG-MGDKVDFKVEAKEYTSTSTNFSY--KDENYSVPLLGSHQVYN 288 Query: 315 ALVAA 319 +A Sbjct: 289 GALAV 293 >gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus sp. Y412MC10] Length = 473 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 113/463 (24%), Positives = 195/463 (42%), Gaps = 48/463 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR IQ G +FV IVG K DGH F+ +A GA A A+ +D + ++ Sbjct: 27 IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGGAGA-----AFWQRDHQP-VPAD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V++T K L A+ + ++ +TG++GK++V V + + +++ + Sbjct: 81 LPLIFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKDMVSALLE----TTYNVHK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208 T +N + P L+ L+ + T + V E G +H ++ + IA Sbjct: 137 TQG----NYNNHIGLP--------LTVLAMKEDTDIIVLEMGMSG--RHEIELLSNIARP 182 Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA- 263 TN+G H+ +++ AK+ + + P I + D+ ++V+ Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPG-GLLIYHGDEPLIRQVLAEEATVK 241 Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R + G Q H + + S F PL G V NAL A + Sbjct: 242 PEGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGEGFSLPLLGRHNVVNALAAMAV 301 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +GI + L + R E V T + G + D ++S + ++ Sbjct: 302 ATHLGIGDEAIRSGFAHLKLSSMRIEAVET-AFGVTVLNDAYNSSPTAVKAAVDVLGDMK 360 Query: 382 G--RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRS-EDPEKIRAEIIH 434 G R I V G G R++ +G+ ++ D AD+ P S K +A Sbjct: 361 GYRRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVFTY--GPLSLHTANKAKARFPE 418 Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIV 475 G + F +K IEA+ +E + ++D VLV A +G H+V Sbjct: 419 GAVLSFTDKEKLIEAL---LEQVTEKDIVLVKASRGMRLEHVV 458 >gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A str. Hall] Length = 462 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVSKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 462 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E +FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRAIALLG 366 >gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora ATCC BAA-2158] Length = 452 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 27/334 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + +R I +V++D+R G +F+A+ G + D H F+ AI G A++VS Sbjct: 9 VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ P +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSH 192 I + G + + G +F +N + P + K + G H A + Sbjct: 120 AILRECGETLYTTG------NF--NNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTS 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL ++ + NL H++ + AK +F L P AII +D Sbjct: 172 GL-------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSND 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + H S + V T+ D D + PLPG + Sbjct: 224 WPHWQQALHAKTIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL A+ L +++G + V + L L VPGR Sbjct: 284 ANALAASALALSVGAPLSAVRQGLSTLKAVPGRL 317 >gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Kocuria rhizophila DC2201] Length = 492 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 31/292 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR + AG +FVA G DGH F+PQA A GA + ++ L D A P Sbjct: 31 VTTDSREVTAGTLFVAKPGETTDGHAFVPQAAAAGA-VLNLTEREVLDDTGAPY----PS 85 Query: 93 LVVDNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV + + + AS RL HP ++AVTG+ GK++ + I G + + Sbjct: 86 VVVADVVQAMGALASHVLQRLRAAHPVTVVAVTGSVGKTTTKDLLHGIFAAEGPT---VA 142 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 P ++ + + P ++ A+ + ++ G TH+ G ++ + ++ Sbjct: 143 PRNSY-----NGEVGVPLTVFTAEQDTEFFVVEMGATHI-------GNIRYLCEMVRPDV 190 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G+ +G H + AK + E L P E A++ DDA + + +R R Sbjct: 191 GAVLCVGSAHAGEFGGVENIARAKGEMVECLAP-EGTAVLNDDDARVRPMRERTT---AR 246 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALV 317 V+S G G+ + VT +G F FP F V++ L+ Sbjct: 247 VVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVHSRLI 298 >gi|220912340|ref|YP_002487649.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter chlorophenolicus A6] gi|219859218|gb|ACL39560.1| UDP-N-acetylmuramate/alanine ligase [Arthrobacter chlorophenolicus A6] Length = 464 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 144/342 (42%), Gaps = 62/342 (18%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 + ++ + GT GKS+ S V + Q +GL SF IG + + S + T S I++A+A Sbjct: 118 DTVVTIAGTHGKSTTTSMVTVLLQGAGLDPSFAIG--ANVPSLGVNAAHGT-SGIFVAEA 174 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + S +R I ++ TN+ DH+D++ T +A + + R Sbjct: 175 --------------DESDGSFLNYRPQ-IAVV----TNVEADHLDHYGTAEAVYESFDR- 214 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F LLP + + ADD ++ + +R NAG RVL G G +++ + Sbjct: 215 FAALLPADGLLVACADDPGARALAERTRNAGTTRVLLYGTAGD-----ADLTLYDDGPGS 269 Query: 293 ISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++V D FD +PG NA A + + +G+ L RFE G Sbjct: 270 VAVSTADGRFDLALQVPGRHNALNAAAAFAVALELGVAPGAAASALGSFSGASRRFELKG 329 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI---- 405 +RG R++ DYAH + L R++ ++ V+F + + + Sbjct: 330 -EARGVRVFDDYAHHPTEVRAALTAARSVAGEHKVHVLF---------QPHLFSRTREFA 379 Query: 406 -----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 ALDLAD A+V D P EDP IPG K Sbjct: 380 REFADALDLADTALVLDIYPAREDP----------IPGVTSK 411 >gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae 3655] gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae PittAA] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999] Length = 469 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 141/338 (41%), Gaps = 45/338 (13%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + I VS+D+R I A +F+A+VG +GH+F +A GA A++ S Sbjct: 17 LQGNDLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQNGAVAMIASE------- 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + ++ P+++V++T+ L + + K + +TG+SGK++V I + G Sbjct: 70 --PVEAHMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKTTVKEMTTAILKECG- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200 ST +F +N + P + +A + G H+ A + GL Sbjct: 127 -----SVLSTQGNF--NNDIGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTGL------ 173 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 +K + N H++ + AK +F+ L K AI+ D + + + Sbjct: 174 -VKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKG-LSKSGTAILNYDSQFYDFWLGKL 231 Query: 261 HNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG----------KDFDFLFPLPGE 309 N S+ GK A ++ QV ++ G + + LPG Sbjct: 232 DNELIYSFSLNSAPGK-------GADYSASQVGLAFNGCAHFIMHTPIGEMNIELTLPGI 284 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V NAL+AA L I +G V + L K+ V GR E Sbjct: 285 HNVGNALLAAALSINVGASLENVRDGLAKIQHVKGRLE 322 >gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus influenzae PittHH] Length = 457 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q+ S+ + Sbjct: 24 QVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVVQ-----QENSSIL-- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 77 -VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLVGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis Z2491] gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis Z2491] Length = 445 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 143/327 (43%), Gaps = 45/327 (13%) Query: 47 VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRK 100 V+ +G DG +F + A++ G + + +S S + D A R+ +L Sbjct: 43 VSQIGKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKRNGGRVL------G 96 Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 + L A + + + ++A+TG++GK++V S V +C + GL + G A+ Sbjct: 97 DIELLAD-IVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAPVLEAELQ 155 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 R + +++ +E SS L+ + ++ A + N+ DH+D + Sbjct: 156 REGKKADVWV----------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRY 197 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 Y + K ++F + ++ ADDA+ + MKRA + S+ Y+ F + Sbjct: 198 DDLLDYAHTKAKIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEYEADFWLER 251 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + + I+ + PL G N + A LC A+G+ +LEH++ Sbjct: 252 ETGRLKQGNEDLIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQ 305 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +P R E +G + G +++D + +N Sbjct: 306 GLPHRVEKIG--EKNGVVFIDDSKGTN 330 >gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Providencia rettgeri DSM 1131] Length = 454 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/369 (22%), Positives = 149/369 (40%), Gaps = 38/369 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+DSR I +F+A+ G + D H F Q + GA+A++V ++ + Sbjct: 27 ISSVSTDSRKIAENCLFIALKGERFDAHDFAQQVVVTGAKALLVERKLNV---------D 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++R + A+ + + I+ +TG+SGK+SV I G + + G Sbjct: 78 CPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGKTSVKEMTASILSERGKTLYTAGN 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +N + P ++ + G H + A + + +K A Sbjct: 138 L--------NNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTTNI-------VKPEAA 182 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 NL H+ + + AK +++ + P+E AI+ D K + Sbjct: 183 LVNNLFAAHLAGFGSPEGVATAKGEIYQGV-PEEGTAIVNLDSYSEKWQFQPRQTVWYYS 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 L+ + F I KQ T + D PLPG + N L A+ L I+ Sbjct: 242 LTSQAKADFYP----SDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIANVLAASALAIS 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSG 382 +G + + K VPGR V + ++ +D + +N MI ++ + + Sbjct: 298 VGASLEDIKNGIAKTQAVPGRLYPVRLSEH--KVVLDDTYNANDGSMIAAIQVLEKMPGY 355 Query: 383 RIIVVFGCG 391 RI+VV G Sbjct: 356 RILVVGDMG 364 >gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum F str. Langeland] gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Clostridium botulinum F str. 230613] Length = 462 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316 +G KF N + + E +FD L +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779] Length = 851 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 102/399 (25%), Positives = 161/399 (40%), Gaps = 49/399 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR Q G +F+A+ + DGH FI AIA GA +V A S+ I ++ +++ Sbjct: 29 DSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQYAPSV------IPASITVIIC 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ L +A + KH +A+TG+ GK+S + Q+ S + + + S Sbjct: 83 NDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLA----SRYSV--LRSPRS 136 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F D + L+ ++ L++Q + A G G TN+G Sbjct: 137 FNAD--------LGLSVTMAELAAQQWAVLEFGADHPGEIAQLCQLFPPEIGIVTNVGSA 188 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+ +Q A + K + ++ LP AI+ DD + +R H R+L VG Sbjct: 189 HLGAFGSQAAIAHEKAAIIQQ-LPAHGYAILNGDDPLVAAMAERTH---ARLLRVGQ--- 241 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVYNALV----AAGLCIAIGIDS 329 C I VT +V+ F P P Q+ + V AA IA+G + Sbjct: 242 ----NAACEI-RWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVA 296 Query: 330 ALVL----EHLEKLHVVPGRFE-FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 L L E L L GRF VG N G I D + S+ L+ + ++ + R Sbjct: 297 GLSLAEMREALADLRPAHGRFNPLVGRN--GATIIDDTFNAAPESVYAALQTLGSLPARR 354 Query: 384 IIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDN 419 I + G + G+IA AD+ I D Sbjct: 355 RIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQ 393 >gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bartonella grahamii as4aup] Length = 473 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 157/351 (44%), Gaps = 38/351 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + G IF I G+ DGH F QA +GA ++V+ + L+D + + P+ Sbjct: 29 VSIDSRTLAEGDIFFCIKGHHLDGHDFAAQAYERGAGVLIVAE-HRLRDMK---KISAPL 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV + + L A + I+A+TG+ GK++ ++Q +G + Sbjct: 85 IVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEALKQALAMTG---------NV 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSF 209 ++ A N P+ LA+ + S G+ + + +H + L +KL+ Sbjct: 136 HANLASLNN-CWGVPLTLAR-MPIESDYGIFEIGM---NHRDEIRPL--VKLVCPHVALI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T++ H+ + + + AK +FE L ++ AI+ AD + ++++A G + +L Sbjct: 189 THICAGHMGFFKNLEEIAKAKAEIFEG-LDEKGIAILNADSDFFSYLVQKAKKCGVKNIL 247 Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G YQ + I L + ++ + + + +D + PG V N+L C Sbjct: 248 SFGESKNADYQARDIRL-----LTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVIAAC 302 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIY-VDYAHTSNSLEM 371 A+G++ VL GR + + S GG Y +D ++ +N M Sbjct: 303 DAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASM 353 >gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. SR1/5] Length = 462 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/380 (22%), Positives = 165/380 (43%), Gaps = 42/380 (11%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L ++ ++ N + P + + ++ +++DSR ++ G +FV +VG + D H FIPQ Sbjct: 1 MKNLTLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIPQ 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 + GA A + S +L+ ++ P + V ++ + + A + ++ +TG Sbjct: 61 VMEAGALATL--SERTLEG------ADHPYIQVGSSLQAVKDIAEFYLEQLDIPVVGITG 112 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S + + + + T +F +N L P ++ + + Sbjct: 113 SVGKTSTKEVIASVLKE------KYRTLKTQGNF--NNELGLPLTVFRLR-----DEDEI 159 Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + + S G + RL I K TN+G H++ + AK +F+ + K Sbjct: 160 AVLEMGISDFG-EMTRLAKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYV--KR 216 Query: 242 SPAIIYADDAYS--KE-------VMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQV 291 + + DD S KE NA +V +G LK + C I K ++ Sbjct: 217 NIVLNGDDDKLSTVKEYNSMQPVFFGNGENASVTCENVESRG----LKGMSCDICLKGKM 272 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + E + F P+PG V NAL AA + G+++ + +E L V GRF + T Sbjct: 273 AENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIET 332 Query: 352 NSRGGRIYVDYAHTSNSLEM 371 + + VD + +N + M Sbjct: 333 DK---FMIVDDCYNANPMSM 349 >gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech586] Length = 453 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 160/365 (43%), Gaps = 36/365 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I++VS+D+R + AG +FVA+ G K D H + A+ GA A++VS + + Sbjct: 24 ISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVNNGAAALLVSKHLPI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVVD+TR L + A + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 VPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSGKTSVKEMAASILRQCGNVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 +F +N + P ++ L Y + G H+ A + + ++ A Sbjct: 134 -----NF--NNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAM-------VRPEAA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEVMKRAHNAG 264 NL H++ + + AK +F LP + AII A D+A ++V+ Sbjct: 180 LVNNLAAAHLEGFGSLEGVAQAKGEIFGG-LPAQGVAIINADSNDEARWQDVLT--GKTL 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R G+ G + + + D PLPG + NAL A L + Sbjct: 237 WRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAATALALT 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382 +G V LE+L VPGR + G++ +D ++ +N S+ + + + Sbjct: 297 VGASLEAVKVGLEQLQAVPGRLFPIALAP--GKLLLDDSYNANVGSMTAAAQVLAEMPGY 354 Query: 383 RIIVV 387 R++VV Sbjct: 355 RVMVV 359 >gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM 20731] Length = 460 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/346 (23%), Positives = 142/346 (41%), Gaps = 57/346 (16%) Query: 22 PMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 PM + + +V +DSR I G +FVA+ G K DGH F+ QA+ GA A VVS Sbjct: 14 PMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVS------ 67 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + + ++ ++V D + + + K ++A+TG++GK+S + + Sbjct: 68 EVPEGVAADRCVVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLG-- 125 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +++ T ++F +N + P + + + ++ VE GL Q R Sbjct: 126 --ERYRV--IKTQANF--NNEIGLPKTLLTIREDTEMA-------VVEMGMRGLGQIR-- 170 Query: 201 GIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +K I A TN+G H++ + + AK + E+ PK A + DD Sbjct: 171 AMKHIAYPDAAVITNVGDTHLELLGSLENIAKAKSEILEDFTPKNH-AFLNGDDPR---- 225 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------------ 304 +SV G +H + + + + V IS +G F + Sbjct: 226 -----------VSVMETGAAVHTYGIDSDADVKAVEISADGLRTVFTYRSRITGATQKVQ 274 Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 PL G V NAL A + G+ A + LE L + R E + Sbjct: 275 LPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENLKMTGMRQEIL 320 >gi|168205550|ref|ZP_02631555.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987] gi|170662912|gb|EDT15595.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987] Length = 874 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + L + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSA 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus DSM 12680] Length = 459 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 90/396 (22%), Positives = 163/396 (41%), Gaps = 51/396 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS +SR G +F A+ G++ DGH F+P+A+ GA A VVS SL Sbjct: 24 EITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGALAAVVSRPVSLPQGLG---- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +++V + +K L + A + +++ VTG+ GK++ + + FQ Sbjct: 80 ERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLTATCLE----ARFQTL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKL-IA 206 T +N + P + L + V VE + L + L I L Sbjct: 136 KTEG----NYNNEIGVPLTLL---RLDHRYEACV----VEMAMRNLGEIEELASIALPTC 184 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVMKR 259 G N+ H++ + + AK LF+ + + ++P ++ A + Y+ + ++ Sbjct: 185 GIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYAVKKVRF 244 Query: 260 AHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A C R+L V + + ++ S+ G+ +F P PG YN + Sbjct: 245 GWGANCDDRLLDVNSSSE------------ETRIKASLAGQAAEFCLPFPGSHLAYNVIA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKN 375 AAG+ + +G+D A + + R GG +D + +N + M L+ Sbjct: 293 AAGVAVRLGVDLADIQSKIRSFSPSSRRLNI--KTGLGGITIIDDCYNANPVSMKAGLEV 350 Query: 376 IRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIA 406 + + +GR V ++ G QG R + K A Sbjct: 351 LSDVAAGRYRVAVLGDMYELGSYEVQGHREVGYKAA 386 >gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janthinobacterium sp. Marseille] gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium sp. Marseille] Length = 498 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 102/403 (25%), Positives = 164/403 (40%), Gaps = 61/403 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TGT+GK++V S V +CQR+GL+ G SP L K Sbjct: 121 VIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI---------------SPAALDKLHQV 165 Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 L+ + V V E SS L H ++ + NL +DH+D+H AY + K R+F Sbjct: 166 LTDDQLPQVWVLELSSFQL--HTTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFG 223 Query: 236 E------------LLPKESP---AIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 ++ SP I + AD+A + G R LSV + + Sbjct: 224 SNTIRVLNRDDALVMQMSSPLSKVITFGADEAEQADCFGLVDENGMRWLSVAVEEEEPQK 283 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLP-----GEFQVYNALVAAGLCIAIGIDSALVLE 334 K+ K V ++V + L P+ G+ NAL A LC AIG+ A +L Sbjct: 284 KR----RKKDNVELAVS---TNKLMPVDALKIRGQHNAINALSALALCRAIGLPFAQLLH 336 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSGRIIVVFG 389 L H P R E V T GG Y D + +N + L + S ++++ G Sbjct: 337 GLRDYHGEPHRVEHVMT--IGGVDYYDDSKGTNVGATVAALNGLGASQDGASNHLVLIAG 394 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 G + Q P+ +A + ++ +D + IRA + I EA Sbjct: 395 -GDGKGQDFSPLADPVAKYARAVILI------GKDADNIRAALQATGVDMINCTTLEEAT 447 Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + A E+ D ++++ ++ + N + V D +REI Sbjct: 448 QKAAELAQSGDAVLLS-PACASLDMFKNYAHRAQVFVDEVREI 489 >gi|182626262|ref|ZP_02954019.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721] gi|177908441|gb|EDT70979.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721] Length = 874 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + L + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M0579] gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240149] gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis NZ-05/33] Length = 445 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Haemophilus influenzae R3021] Length = 457 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEISYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQGSQVKGRL 319 >gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Shewanella amazonensis SB2B] gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shewanella amazonensis SB2B] Length = 455 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 162/376 (43%), Gaps = 52/376 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + SDSR + G +FVA+ G + DGH F A A GA A++V L Sbjct: 24 VSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVERELPLA--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +T+K + + + +A+TG++GK+SV V + + F G Sbjct: 75 LPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVLFTAG- 133 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F +N + P + + L + Y GV + A+ G + ++ Sbjct: 134 -----NF--NNEIGVPLTLLRLEQGHEY----GVFELG--ANHKGEIDYTSSLVRPSVSL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H++ ++ AK ++ L ++ I+ DD Y++ ++ + G RVL Sbjct: 181 VNNVGSAHLEGFGSEAGVAEAKSEIYLH-LAQDGVGIVNLDDRYAETMLNKLK--GKRVL 237 Query: 269 SVGY-QGKFIHLKKVCA----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G G I ++V A H VT+S PL G+ QV NAL Sbjct: 238 TFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVS---------LPLAGKHQVSNALA 288 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKN 375 A +CIA+G+ + L KL V GR G + VD Y NS+ + Sbjct: 289 TAAICIALGLPLQEIAAGLAKLAPVKGRMM---PRQLGRLLLVDDSYNANPNSVGAAIDW 345 Query: 376 IRTITSGRIIVVFGCG 391 ++ I++ R +V+ G Sbjct: 346 LKEISTNRTLVLGDLG 361 >gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arthrospira platensis str. Paraca] Length = 465 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 40/298 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R++Q G +FVA+ G++ DGH F+ AIA+GA VVS +++ P+ Sbjct: 33 ITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVS------HPEFPL 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + A + P ++ VTG+ GK++ + + G G Sbjct: 87 IPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVHKTFG---- 142 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P K L L S V +++ D R+ + G Sbjct: 143 ----NYNNEIGVP------KTLLELRSDHDFAVIEMAMRGPGEIADLTRI--TRPTVGVI 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267 N+G HI ++ A AK L E +P S A++ D+ + +M A AG + Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTTI 246 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G +G + + + TI VEG D PLPG N L A + AI Sbjct: 247 -TYGLEGGILQGELLG------HETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAI 295 >gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha153] Length = 445 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella pealeana ATCC 700345] Length = 459 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 63/339 (18%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VSSDSR + + +FVA+ G+ DGH F A+ GA A++V + + Sbjct: 24 IDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGANALLVERELPI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VV N+++ + + + + +A+TG++GK+SV + I + Q Sbjct: 75 AAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNGKTSVKEMIATILSQ------QHRV 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + K G H + GL +K Sbjct: 129 LYTAGNF--NNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGL-------VKPSVA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + + AK +F + + A+I ADDA++ +VM +A + Sbjct: 180 MVNNVASAHLEGFGSLEGVAKAKSEIFNHVTVGGT-AVINADDAFA-DVMLQASS----- 232 Query: 268 LSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKD----------FDFLF---------PLP 307 H+K++C + N+ + V D F + PL Sbjct: 233 ----------HVKQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHRVELPLA 282 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 G QV NAL A +C+A+G+ A + + L +L V GR Sbjct: 283 GRHQVSNALAATSICLALGLSLAHICQGLSQLKPVKGRM 321 >gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis subsp. hominis C80] Length = 451 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 41/372 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E +I V+ DSRH++ +FV G DGH F+ QA+ GA A QD S Sbjct: 21 YLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKSGAGASFYEKG---QDISD 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143 +I+ PI+ VD+T L A + Y KH ++ VTG++GK++ ++ + + Sbjct: 78 SIQG--PIIWVDDTLTALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 131 EFRVKKTQG----NYNNEIGLP--------LTILQLDKDTEISILEMGMSGF--HEIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L K IY D+ K + Sbjct: 177 SKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KSDGTFIYDGDEPLLKPHV 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315 + NA +++SVG + VC + N + + + K+ + P+ G + NA Sbjct: 235 ENVKNA--KLVSVGLNHENT---LVCKVENSKNDGIAFMINNKEH-YELPILGIHNMKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +A + +G+D + +++ + + R E T+++ I Y + S++ + Sbjct: 289 TIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDT 348 Query: 376 IRTITSGRIIVV 387 + + +IIV+ Sbjct: 349 LSHMNGRKIIVL 360 >gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus hominis SK119] Length = 451 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 41/372 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E +I V+ DSRH++ +FV G DGH F+ QA+ GA A QD S Sbjct: 21 YLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQALKDGAGASFYEKG---QDISD 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143 +I+ PI+ VD+T L A + Y KH ++ VTG++GK++ ++ + + Sbjct: 78 SIQG--PIIWVDDTLTALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 131 EFRVKKTQG----NYNNEIGLP--------LTILQLDKDTEISILEMGMSGF--HEIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L K IY D+ K + Sbjct: 177 SKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KSDGTFIYDGDEPLLKPHV 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315 + NA +++SVG + VC + N + + + K+ + P+ G + NA Sbjct: 235 ENVKNA--KLVSVGLNHENT---LVCKVENSKNDGIAFMINNKEH-YELPILGIHNMKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +A + +G+D + +++ + + R E T+++ I Y + S++ + Sbjct: 289 TIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDT 348 Query: 376 IRTITSGRIIVV 387 + + +IIV+ Sbjct: 349 LSHMNGRKIIVL 360 >gi|168215842|ref|ZP_02641467.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239] gi|182381983|gb|EDT79462.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239] Length = 874 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/405 (21%), Positives = 170/405 (41%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 IH----LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + L + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Erwinia amylovora ATCC 49946] gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia amylovora ATCC 49946] gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia amylovora CFBP1430] Length = 452 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 27/334 (8%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + +R I +V++D+R G +F+A+ G + D H F+ AI G A++VS Sbjct: 9 VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ P +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSH 192 I + G + + G +F +N + P + K + G H A + Sbjct: 120 AILRECGETLYTTG------NF--NNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTS 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 GL ++ + NL H++ + AK +F L P AII +D Sbjct: 172 GL-------VRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINSDSND 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + H S + V T+ D D + PLPG + Sbjct: 224 WPHWQQALHAKTVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNI 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL A+ L +++G + V + L L VPGR Sbjct: 284 ANALAASALALSVGAPLSAVRQGLSTLKAVPGRL 317 >gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Streptococcus pyogenes MGAS2096] Length = 353 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 21/242 (8%) Query: 2 KLQDLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHL 58 +L D++ KD F E+++ + ++ +S DSR + +F A K D Sbjct: 6 QLLDILKKDHNFREVLDA-DGYHYHYQGLSFERLSYDSRQVDGKTLFFAKGATFKAD--- 61 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117 ++ +AI G + + Y L P+++V + +K +SL A YG E + Sbjct: 62 YLKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLK 112 Query: 118 -LAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 LA TGT GK++ A F + + S + F T+ ++LTTP + L ++ Sbjct: 113 LLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMA 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+TH+ +E SS R+ G+ G F N+ DHI H T + YF K L Sbjct: 173 ECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLL 232 Query: 234 FE 235 E Sbjct: 233 ME 234 >gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 453 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 44/373 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +VS+D+R + +G +FVA+ G K D H + A+ GA A++VS + + Sbjct: 24 IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSKHLPI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L + + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 VPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + + A+ G + D ++ + Sbjct: 134 -----NFNNDIGV----PLTL---LRLTAEHQFAVIELGANHIGEIAYTTDLVRPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRA 260 NL H++ + AK +F LP + AI+ AD K V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPADGVAIVNADSNDFPHWQVTLNHKTVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A C + F V + + T+ + L PLPG+ + NAL AA Sbjct: 241 PQAACDI-------DFFA-SDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAAS 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +++G V L +L VPGR + + G++ +D ++ +N S+ + + Sbjct: 293 LAMSVGATLEAVKAGLSQLQAVPGRLFPIALSE--GKLLLDDSYNANVGSMTAAAQVLAE 350 Query: 379 ITSGRIIVVFGCG 391 + R++VV G Sbjct: 351 MPGYRVMVVGDMG 363 >gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8802] Length = 457 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 37/309 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++DSR+I G IF+A+ GN DGH F A+ +GA A++V S++ Sbjct: 30 IDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKS-----TKQ 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V +T A + ++A+TG+ GK++ + + G+ Sbjct: 85 IPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVH----- 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 T ++ +N + P K L L+ Q + +E GL++ L + IA Sbjct: 140 -KTKENY--NNEIGVP------KTLLELTRQH-DYAVIEMGMRGLNEIAL--LSQIARPT 187 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G HI +++A AK L E +P ++ AI D++ + K+ Sbjct: 188 IGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG-- 244 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +S G +G I + + Q T+ VEG DF PLPG N L A + + Sbjct: 245 ETISYGLEGGDI----TGELLDNQ--TLRVEG--MDFPLPLPGRHNALNYLGAIAVAKCL 296 Query: 326 GIDSALVLE 334 +D ++++ Sbjct: 297 KLDCNVLMQ 305 >gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Alcanivorax borkumensis SK2] Length = 454 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 139/344 (40%), Gaps = 35/344 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N V++D+R I+ G +F A+ G + D H F+ A GA A +V D Sbjct: 21 KVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFD------- 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ V ++RK L A + LAVTG +GK++V + G Sbjct: 74 --NVVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLGE--------G 123 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +T +F D + P+ L + L V + A L +++ Sbjct: 124 TLATNGNFNNDVGV----PLTLLR-LRAEHRYAVIELGANAPGEIAWTSSLTRPQVVL-- 176 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ H++ + Q +AK +F + AI+ DD+++ ++A AG V+ Sbjct: 177 VTNVTGAHLEGFGSMQGIADAKAEIFTGCT-QGGQAIVNNDDSFADFFAEKARAAGLTVV 235 Query: 269 SVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V G ++ + + + + + G L PLPG QV NAL+A Sbjct: 236 RVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAV--LVPLPGAHQVSNALMACAAVR 293 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A+G VL L L VPGR S G VD + +N Sbjct: 294 ALGASLPQVLPRLAALKPVPGRMHI---QSAGTGTVVDDTYNAN 334 >gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 462 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEVKVGKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTITLLG 366 >gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae ATCC 23330] Length = 443 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 41/270 (15%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 +++ A L G+ P+ I+A+TG++GK++ S V +CQ+SGL + G T A R Sbjct: 96 VAILADLLRGQ-PDKIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTPVLEAWLER 154 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 P+ +++ +E SS L+ D + A + N+ DH+D + Sbjct: 155 RGKPADVWV----------------LELSSFQLET--TDCLNATAATCLNISEDHLDRYD 196 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFI 277 Y +AK R+F ++ ++ ADD + + MKR H +V Y Q + Sbjct: 197 DLLDYAHAKDRIFH----GDTVQVLNADDVFCR-AMKRDHR------TVHYFSLTQSQDY 245 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 HL A +Q + + PL G N L A LC +IG++ +L H++ Sbjct: 246 HLDAATAQLKHRQDNLLPQNA-----IPLQGSHNAANVLAALALCESIGMERETLLCHVQ 300 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +P R E VG + G +++D + +N Sbjct: 301 TFKGLPHRVEKVG--EKNGVVFIDDSKGTN 328 >gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Arthrospira platensis NIES-39] Length = 468 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 40/298 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R++Q G +FVA+ G++ DGH F+ AIA+GA VVS +++ P+ Sbjct: 33 ITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAKGALCAVVSREFAVS------HPEFPL 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + A + P ++ VTG+ GK++ + + G G Sbjct: 87 IPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGKTTTKELISAVLSHHGKVHKTFG---- 142 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P K L L S V +++ D R+ + G Sbjct: 143 ----NYNNEIGVP------KTLLELRSDHDFAVIEMAMRGPGEIADLTRI--TRPTVGVI 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267 N+G HI ++ A AK L E +P S A++ D+ + +M A AG + Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWAGTTI 246 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G +G + + + TI VEG D PLPG N L A + AI Sbjct: 247 -TYGLEGGILQGELLG------HETIRVEG--IDLPLPLPGSHNASNFLAALAVLRAI 295 >gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 458 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/368 (24%), Positives = 160/368 (43%), Gaps = 28/368 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I++V +D+R + G +F+A+ G K D H F A+A+GA A++VS + Sbjct: 21 DTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSKRLPI------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P +VV +T L L + + + P I+A+TG+SGK+SV +I ++ G + Sbjct: 74 --DAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQCGNVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G +F D + P+ L L V + A+ G + ++ +K + Sbjct: 132 AG------NFNNDIGV----PLTL---LRLEPEHEFAVVELGANHVGEIAYTVNLVKPES 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGC 265 NL H++ + AK +F+ L AII AD + + K H Sbjct: 179 ALVNNLAAAHLEGFGSLAGVAKAKGEIFDG-LTSNGTAIINADSNDWPHWQEKITHQRVW 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R + V H + + + PLPG V NAL A L +++ Sbjct: 238 RFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMSV 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 G V + L +L VPGR + N++ ++ +D + +N S+ + + ++ R Sbjct: 298 GATLENVRQGLSELKAVPGRLFPIRLNAQ--QLILDDTYNANVGSMTAAAQVLGSMPGYR 355 Query: 384 IIVVFGCG 391 ++VV G Sbjct: 356 VMVVGDMG 363 >gi|168210142|ref|ZP_02635767.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626] gi|170711753|gb|EDT23935.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626] Length = 874 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/405 (21%), Positives = 174/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 I--HLKKVCAI--HNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + +LK+ I + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Stenotrophomonas maltophilia K279a] Length = 464 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 148/341 (43%), Gaps = 23/341 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R + G ++VA+ G + DGH F A A+GA A++V ++ Sbjct: 24 IDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLLPIE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++ L+ A+ + + A+TG++GK+SV S + I Q+ + ++ Sbjct: 75 LPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVKSLLLSILQQVAQHAHKV-- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + ++N + P + A + A G + D + Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267 N+ H++ + K ++ L P + A+I DDAY + + A CRV Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVINVDDAYGRWFEQHFVGTPARCRV 245 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L G + I + + A Q T+ + + LPG V NAL AA L +A G Sbjct: 246 LRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNALAAASLALAAG 305 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +D AL+ L + VPGR + R G + VD ++ +N Sbjct: 306 VDLALIAAGLAEAQPVPGR--QIAHQLRNGAVLVDDSYNAN 344 >gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 8801] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 37/309 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++DSR+I G IF+A+ GN DGH F A+ +GA A++V S++ Sbjct: 30 IDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKS-----TKQ 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V +T A + ++A+TG+ GK++ + + G+ Sbjct: 85 IPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVH----- 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 T ++ +N + P K L L+ Q + +E GL++ L + IA Sbjct: 140 -KTKENY--NNEIGVP------KTLLELTRQH-DYAVIEMGMRGLNEIAL--LSQIARPT 187 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G HI +++A AK L E +P ++ AI D++ + K+ Sbjct: 188 IGLITNVGTAHIGRLGSKEAIAQAKCELLAE-MPPDATAIFNHDNSLLVQTAKKVWKG-- 244 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +S G +G I + + Q T+ VEG DF PLPG N L A + + Sbjct: 245 ETISYGLEGGDI----TGELLDNQ--TLRVEG--MDFPLPLPGRHNALNYLGAIAVAKCL 296 Query: 326 GIDSALVLE 334 +D ++++ Sbjct: 297 KLDCNVLMQ 305 >gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 35/364 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89 +S+DSR ++ +F+ + G K DG F+ AI +GA A++ + + L+DFS Sbjct: 29 ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAIAVITARLENVECLKDFS------ 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V+ T + L AS K +AVTG+SGK++ + QI + +++ Sbjct: 83 VDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDMIAQILSK----KYKVLK 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 T +F +N + P I+ + + + V + S G + RL I + Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLEDTHQIAVVEMGMSGFG-EIRRLKNIAEPQVAV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 FTN+G HI+ +++ AK L E +E+ ++ ADD + K + Sbjct: 189 FTNIGVAHIEKLGSRENILKAKTELIEN-FKEENVIVLNADDDM---LSKIPLQYSSKYY 244 Query: 269 SVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G + I K C I + + T+ + + + +PG VYN+L A + + Sbjct: 245 RYGIKSGEI---KACDIEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEF 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 GI+ + E L+ R + V Y +S++ L +R + + R I Sbjct: 302 GINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDDV-YNANPDSMKAALSVLRDLPAKRKI 360 Query: 386 VVFG 389 V G Sbjct: 361 AVLG 364 >gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coprococcus catus GD/7] Length = 456 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 153/373 (41%), Gaps = 63/373 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+ G+IFVA G + DGH FIP A+GA A V+ +D P ++V Sbjct: 35 DSRQIEPGYIFVATKGERVDGHRFIPDVFAKGALA-VICEVLPEEDLG-------PCILV 86 Query: 96 DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 +++ F++L + + + NI + +TG+ GK+S F+ + + +++ T+ Sbjct: 87 EDS--FMALKQAAAFYRQQLNIRVVGITGSVGKTSTKEFIAAVL----VEKYKVHKTAG- 139 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNL 212 +N + P I+ + + + ++ G + HRL + + TN+ Sbjct: 140 ---NYNNEVGLPLTIF-----GIQDDDQIAVLEMGINTFG-EMHRLSEVARPDICVMTNI 190 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--------DAYSKEVMKRAHNAG 264 G+ H++ + AK +F+ + P E I+ D D Y K + N Sbjct: 191 GQCHLENLIDRDGILRAKSEIFDFMNP-EGTVIVNGDDDKLATIHDVYGKAPITFGMNKD 249 Query: 265 CRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + + + IH+ V N PLPGE +YNA+ Sbjct: 250 NAIWADHIENRGLLGSRADIHMGDVLVHAN----------------IPLPGEHMIYNAMA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 AA + + + + + + V GR + G ++ +D + +N + M ++ Sbjct: 294 AAAVGVQFDMTKEEITAGISHVEAVAGRSHLI---EAGDKVVIDDCYNANPVSMKAAIDL 350 Query: 377 RTITSGRIIVVFG 389 GR + + G Sbjct: 351 LATAPGRKVAILG 363 >gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum Bf] Length = 462 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEVKVGKS 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + ++ V+NT K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNAL 316 +G KF N + + E FD F +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp. ADP1] Length = 468 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 143/346 (41%), Gaps = 30/346 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I + +DSRH +AG F+A+ G + D H F+ Q + QG + +V + F Sbjct: 34 EGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQGCQVAIVEQPLDVDIFQ--- 90 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 L+V +TR L + ++P+ ++A+TG+SGK++ + I R Sbjct: 91 ------LIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTTKEMLGSILSR------ 138 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + PT ++ +N L P + L + + AS G + ++ Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELRPEHQYAVMELGASHQGEIDYTSKLVQPH 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ + AK +++ + + AI+ ADD ++ ++ + Sbjct: 192 VAGILNIGTAHLGEFGGRDGICRAKSEIYQH-IAVDGTAILPADDDFTDQIKQAIQTQ-- 248 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++LS G G+ I+ V + + P GE V NAL A +AI Sbjct: 249 KMLSFGQDGE-IYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAFALAI 307 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 GID +++ L GR F+ G +++D + +N M Sbjct: 308 GIDLNNIVQGLSAAQGAKGRLNFI---QHGHHLFIDDTYNANPGSM 350 >gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris str. B100] gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas campestris pv. campestris] Length = 494 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 29/350 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + +G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV NT L+ A+ + ++A+ Sbjct: 55 ADAVARGASGLLVDRLLPAL--------HVPQVVVANTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T+ + ++N + P + A + L+ Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVD---GITAYANPGNRNNEIGLPLAVIAAPDDADLAVY 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + ++ D R D + L+ N+ H++ + K ++ LP Sbjct: 164 EMGAGKPGDIAYLTDIARPD-VALV----NNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV 295 + A+I ADDA+ ++++ + G RVL G + +H Q + + Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQ-GRRVLRYGLHASAEITARQLRLHAAGAQFVLVI 276 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + PLPG V NAL A GL + GI ++ L + V GR Sbjct: 277 PQGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR 326 >gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 494 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 29/350 (8%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL L LI + + + I+ V +D+R + +G ++VA+ G + DGH F Sbjct: 1 MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+GA ++V + P +VV NT L+ A+ + ++A+ Sbjct: 55 ADAVARGASGLLVDRLLPAL--------HVPQVVVANTELALARIAAGMQRDRATRVIAL 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK+SV + + I +G G T+ + ++N + P + A + L+ Sbjct: 107 TGSNGKTSVKALLLAILAEAGRVD---GITAYANPGNRNNEIGLPLAVIAAPDDADLAVY 163 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + ++ D R D + L+ N+ H++ + K ++ LP Sbjct: 164 EMGAGKPGDIAYLTDIARPD-VALV----NNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217 Query: 241 ESPAIIYADDAYS----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISV 295 + A+I ADDA+ ++++ + G RVL G + +H Q ++ Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQ-GRRVLRYGLHASAEITARQLRLHAAGAQFVLAT 276 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + PLPG V NAL A GL + GI ++ L + V GR Sbjct: 277 PQGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR 326 >gi|330883892|gb|EGH18041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 106 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 TP PI + L+ L G V++E SSHGLDQ R + TNL RDH+DYH T Sbjct: 1 TPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALAFDVAVLTNLSRDHLDYHGTM 60 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 +AY AK +LF +I DDA+ +E+ Sbjct: 61 EAYAAAKAKLFA--WSNLKCRVINLDDAFGREL 91 >gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl [Oxalobacter formigenes HOxBLS] Length = 454 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 38/375 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA---YSLQDFSATIRSN 89 +S+DSRH+Q G +F+A+ G D H F+ + + A++V Y L Sbjct: 26 ISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKVAAVLVERVPENYPL---------- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR + A + ++ VTG++GK++V + I + + G Sbjct: 76 -PAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTA------WGE 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +S +N + P ++ + + + G+ H+ A + Q + G Sbjct: 129 NCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQPTV-------G 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N R+H ++ Q+ +A + +LP+ A+ ADDAYS + + G + Sbjct: 182 LVNNAQREHQEFMQSVEAVARENGTVI-RMLPENGIAVFPADDAYSS--LWAGYAGGRQT 238 Query: 268 LSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ G+ K + I K ++ +S+ G+ + G V NA+ AA C+A G Sbjct: 239 MTFGFS-KDADVSAAYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACCLAAG 297 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 I + E LEK V GR E + G + +D + +N S+ + + + S I Sbjct: 298 IGKLEIAEGLEKFVPVRGRLER--KTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDGI 355 Query: 385 IVVFGCGGDRDQGKR 399 V+ G ++G+R Sbjct: 356 FVLGDMGEVGEEGER 370 >gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34] gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34] Length = 856 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 166/393 (42%), Gaps = 46/393 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + I +GL ++G T T + Q R+ Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHILASNGL---RMGMTGTDGVYIQGERI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ Y Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYAD-------DAYSKEVMKRAHNAGCRVLSV-- 270 T + K + + + P + AD DA V AH+AG +++ Sbjct: 575 ISTVEDLAVLKSVIVQNVAPHGMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMALHR 634 Query: 271 --GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326 G + F+ ++ A +V I + D G FQV NA+ + A+G Sbjct: 635 AQGRRVVFVEGDQIVATEGDTEVRIPLA----DIPLTRNGSIGFQVENAMSSIAAAWALG 690 Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 ID A++ L PGRF + +G + DY H ++++ + + T+ S Sbjct: 691 IDWAVIRRALATFVNDAATAPGRFNVF--DFKGATLIADYGHNPDAIQALCNAVETMPSK 748 Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 R++V+ G G RD+ R I+G + ++ + D R + ++ A + G+ G Sbjct: 749 RRVVVISGAGDRRDEDIRKQTQILGGV---FDEVVLYQDQCQRGREDGEVLALLREGLQG 805 Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464 ++ + +E IR TA+ L D+ ++ Sbjct: 806 -AQRTSHVEEIRGEFVAIDTALSHLQPGDLCLI 837 >gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 32953] gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis YPIII] gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis PB1/+] gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP 32953] gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pseudotuberculosis IP 31758] gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis YPIII] gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia pseudotuberculosis PB1/+] Length = 458 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 42/353 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV+ D+R + AG +FVA+ G + DGH F AIA GA A++VS + Sbjct: 28 EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RLLV 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L FA+ + + P I+A+TG+SGK+SV I ++ G + G Sbjct: 79 GGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAG 138 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F D + P+ L L + + + A+ G + D + + Sbjct: 139 ------NFNNDIGV----PLTL---LRLTAEHDFAVIELGANHVGEIAYTTDLSRPESAL 185 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKR 259 NL H++ + AK +F LP AII AD ++K V + Sbjct: 186 VNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRF 244 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + +A + + +H+ T+++E PLPG+ + NAL AA Sbjct: 245 SPHAAEHIDFYASDVRITPQLTSFTLHSPFG-TVAIE-------LPLPGQHNIANALAAA 296 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 L +++G D A V + L +L VPGR V G++ +D ++ +N MI Sbjct: 297 ALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAE--GKLLLDDSYNANVGSMI 347 >gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium limicola DSM 245] Length = 473 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 38/230 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTP 91 DSR +Q G IFVA+ G + DGH +I A+GA VVS A+ +D +A RS Sbjct: 36 DSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS--- 92 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 L+VD+T + L A + AV G++GK++ + + +G Sbjct: 93 YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELIASV--------LGVGFKV 144 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGI 202 +S ++N L P + K + ++ G+ H S+ +HGL Sbjct: 145 HMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHPGEMELLASIAMPTHGL-------- 196 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 TN+G +H+++ Q A+ RL+E L + ADD + Sbjct: 197 ------LTNIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPW 240 >gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus acidilactici 7_4] Length = 459 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 90/382 (23%), Positives = 158/382 (41%), Gaps = 30/382 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +P QW E + V DSR + G +FV I G + DGH FI QAI GA A + + + Sbjct: 17 YPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGAVATLWA-----K 70 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D T ++ P + V++ L A K ++A+TG++GK++ + Sbjct: 71 DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDMTAAVLA-- 128 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + F + T ++F +N + P I L ++ V V + G + Sbjct: 129 --TEFNV--VKTEANF--NNEIGVPITI-----LGMNANTEVLVVELGMDRPGQLHFLSE 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 ++ T +G HI++ +T+ +AKM + + L KE IY D +A Sbjct: 178 LVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGL--KEDGCFIYDGDEPLLAERAKA 235 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + R+ + + + V + +++ + + P+ GE+ V NAL A Sbjct: 236 VDVEQRMFGMKNEND-VFASDVAGTDTETSFKTNLD-PEVEVKLPIIGEYNVKNALAAIT 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI-RT 378 + + A L ++ R E++ +G RI D Y + + +L + T Sbjct: 294 VGDRYHVGVADSARALADFNLTKNRTEWL-KGRQGERILSDVYNSNPTAAKAVLNSFAHT 352 Query: 379 ITSGRIIVVFG----CGGDRDQ 396 +GR VV G G + DQ Sbjct: 353 KKTGRRFVVLGDMLELGENADQ 374 >gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus sp. 18P13] Length = 454 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 29/297 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E+S+D+R I G +F+A+ G + DGH F QA QGA A++ S + + Sbjct: 25 VTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGAVAVI----------SDHVIPD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVD+T K L FA+ K + VTG+ GK++ + + + LS+ Sbjct: 75 CPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNMIALV-----LSTH---- 125 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-GS 208 T+ + N + I L K L L S V S + RL + G Sbjct: 126 CKTLKTAGNLN-----NEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPSIGV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI ++Q+ AK+ + + + ++P ++ DD Y +K + Sbjct: 181 ITNIGFSHIAQLKSQEGICRAKLEILDG-MAADAPLVVNGDDPYLIP-LKTTLSRPVYTY 238 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G +++ + + + +G P GE V N AA CI + Sbjct: 239 GIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNG--AAAFCIGM 293 >gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Stenotrophomonas sp. SKA14] Length = 464 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 39/349 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R + G ++VA+ G + DGH F A A+GA A++V ++ Sbjct: 24 IDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARGASALLVERLLPIE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++ L+ A+ + + A+TG++GK+SV S + I Q+ + ++ Sbjct: 75 LPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKTSVKSLLLSILQQVAQHAHKV-- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + ++N + P + A + A G + D + Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267 N+ H++ + K ++ L P + A+I DDAY + + A CRV Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAAL-PADGVAVINVDDAYGRWFEQHFVGTPARCRV 245 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L G + H + A + + +G F + P LPG V NAL A Sbjct: 246 LRYGLE----HTADITA----RDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAA 297 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A L +A G+D AL+ L + VPGR + R G + VD ++ +N Sbjct: 298 ASLALAAGVDLALIAAGLAEAQPVPGR--QIAHQLRNGAVLVDDSYNAN 344 >gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium carboxidivorans P7] gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium carboxidivorans P7] Length = 462 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 42/395 (10%) Query: 11 FPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 F E++N + +Q K N++S+D+R I IF+A+ G +G+ +I A GA Sbjct: 6 FDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNGAS 65 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++ +D I T I+ V++T+K L A K ++ +TG++GK+S Sbjct: 66 MCIIDEIKYRED---EIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTST 122 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + LSS + T +F +N + P I+ +E Sbjct: 123 KDLLA-----AALSS-KYKVFKTQGNF--NNEIGLPLMIFKL-------DNSYDIAVLEM 167 Query: 190 SSHGLDQ-HRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 + L++ HR+ + K TN+G HI +++ AK+ + + K S I+ Sbjct: 168 GMNNLNEIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEI-TDFFDKNSILIVN 226 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQ-VTISVE--GKDFDFL 303 D+ +++ + + + G + G ++ C I K+ V SVE GK F+ Sbjct: 227 GDN----DLLSGVKSNKFSIYTTGMENGNNLN---ACDIELKENFVEFSVEENGKKFEET 279 Query: 304 F--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV- 360 F +PG+ + N+L+A +G+++ + E L+ L R + + +G + + Sbjct: 280 FHVEIPGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLI----KGKKFNIL 335 Query: 361 --DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 Y +S++ + ++ + S R I V G G+ Sbjct: 336 NDCYNANPDSMKAAIDVLKNVESSRRIAVLGTMGE 370 >gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 23/321 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + +G ++VA+ G + DGH F A+A+GA ++V + Sbjct: 17 IDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVDRLLPAL--------H 68 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV NT L+ A+ + ++A+TG++GK+SV + + I +G G Sbjct: 69 VPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAILAEAGRVD---GI 125 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T+ + ++N + P + A + L+ + ++ D R D + L+ Sbjct: 126 TAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARPD-VALV---- 180 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAHNAGC 265 N+ H++ + K ++ LP + A+I ADDA+ ++++ + G Sbjct: 181 NNIAPAHLERMGSLLGVAQTKGAIYTA-LPADGVAVINADDAFGAWFEQQLLAQPLQ-GR 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 RVL G + +H Q ++ + + PLPG V NAL A GL + Sbjct: 239 RVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGLALG 298 Query: 325 IGIDSALVLEHLEKLHVVPGR 345 GI ++ L + V GR Sbjct: 299 AGIALPIIAAGLAQATQVAGR 319 >gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM 14600] Length = 560 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 92/428 (21%), Positives = 164/428 (38%), Gaps = 91/428 (21%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I V +D+R ++ ++F+ VG K D H FIPQA QGA + + S +D + Sbjct: 42 YERLTIAGVVTDNRQVERDFLFIPFVGEKVDAHRFIPQAFEQGA-----ACSLSEEDLTD 96 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P + V+++++ L A+ + ++ + G+ GK+S V + R Sbjct: 97 PV---GPCIRVESSQRALMDIAAYYRRQLKLPLVGIIGSVGKTSTKEMVASVLSR----- 148 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203 T +F +N + P + + H V G+D ++ + Sbjct: 149 -HYSVLKTEGNF--NNEIGMPMTVLKIR----------DHHQVAVVEMGIDNFGQMSALA 195 Query: 204 LIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 +A TN+G H+++ +T+ +K +F+ L S I+ DD + ++R Sbjct: 196 AVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGAS-VILNGDDDHLN-CIRR 253 Query: 260 AHNA---------------------------------------------GCRVLSVGYQG 274 A A GC +S Y Sbjct: 254 AGGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADGCFDMSAAYTD 313 Query: 275 KFIHLKKVCAIHNKQQVT--------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + ++ N + I+ EG DF+ + P+PGE VYNAL AA + ++G Sbjct: 314 QERLARETYRAENLSALGMEGMSASFITPEG-DFEAVIPIPGEHNVYNALAAAAVGQSLG 372 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRII 385 +D + +E + GR F+ GG +D + +N M + GR I Sbjct: 373 LDLDEIKAGMETASTISGRAHFL---HLGGLTLIDDCYNANPSSMRASLAVLARAKGRRI 429 Query: 386 VVFGCGGD 393 V G G+ Sbjct: 430 AVLGDMGE 437 >gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM 17241] Length = 452 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/303 (25%), Positives = 128/303 (42%), Gaps = 28/303 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ VS+D+R + G +FVA+ G + DGH +I A+ GA V A+ +D+ A Sbjct: 17 EGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGGAACAV---AHERRDYGA-- 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P++ V NT++ L A + + + +TG+ GK++ + + FQ Sbjct: 72 ---GPVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKDMIAAAVS----AGFQ 124 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKL 204 T+ + N + I L K L L ++G VE G + D + Sbjct: 125 -----TLKTEGNLN-----NEIGLPKTLLGL-TRGHEAAVVEMGMQGFGEIAALADVARP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI+ +++ AK+ L + LP +P + DD K+V + Sbjct: 174 TLGVITNIGVSHIEQLGSRENIMKAKLEL-ADALPDGAPLFLCGDDDLLKKVSIPRLDV- 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R V +H + + T+ G P G V NA+ A G+ +A Sbjct: 232 -RFYGVENPACALHAADIREADAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGMA 290 Query: 325 IGI 327 +GI Sbjct: 291 LGI 293 >gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus turgidum DSM 6724] Length = 459 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 32/263 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKL DL +D E N + I RE K++ +S+D+R+I +F+A+ G K DGH F+ Sbjct: 1 MKL-DLTVEDILEATNGVLI-KGDIRE-KVDSISTDTRNINEDEVFIALKGEKFDGHDFV 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 AI +G + I++S +++ N ++ V +T K L A+ K ++ V Sbjct: 58 KDAILKGVKGIIISREIAVE-------GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+SGK++ + + ++ G + +S +N + P I A+ + Sbjct: 111 TGSSGKTTTKNLIGKLLSIVG--------KTYVSRENFNNEIGVPLSILDAE-------E 155 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V + +E + + L + IA G TN+G HI +++A AK +FE Sbjct: 156 DVDFLVLEMAMRNKGEISL--LSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEH 213 Query: 237 LLPKESPAIIYADDAYSKEVMKR 259 + ++ AI+ DD +S + ++ Sbjct: 214 -IKQDGVAILNNDDPFSMRIYEK 235 >gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum DSM 43021] Length = 465 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 40/232 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FVAI G++ DGH F QA+ GA A++ S + P +VV Sbjct: 34 DSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPV-----------DAPAVVV 82 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG-----LSSF--QI 147 +T L+ A+ + P ++ VTG++GK+S + ++ R G + SF +I Sbjct: 83 GDTVTALADLATAVCADLPSTTVIGVTGSAGKTSTKDLLARLTARIGPTIAPVESFNNEI 142 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G T+ +D R YL LS + ++H++ R+ ++ G Sbjct: 143 GHPLTVLKAGEDTR-------YLVLELSARDAGHISHLA-----------RIAPPRI--G 182 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 N+G H+ + A AK L E LP + A++ ADD + +R Sbjct: 183 VVLNVGTAHLGVFGGKDAIAKAKGELVEA-LPADGVAVLNADDPLVAAMARR 233 >gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria subflava NJ9703] gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria subflava NJ9703] Length = 445 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADMWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHKADFWLERETGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacillus flagellatus KT] Length = 453 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 89/387 (22%), Positives = 162/387 (41%), Gaps = 70/387 (18%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR ++ +FVA+ G + DGH + +++GA A+++S D A Sbjct: 22 IQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSEGATAVLLS-----HDVGA----- 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--------- 140 TP ++V++TR L A+ K + A+TG++GK+SV + I + + Sbjct: 72 TPAVLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVKEMLAAILRVAAGADDAVLA 131 Query: 141 --GLSSFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + IG T+ + +R + A +SYL+ G V++ Sbjct: 132 TQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLTRIGRPDVAL---------- 181 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253 N H+ + + AK +FE L + A+I ADD+++ Sbjct: 182 -----------INNATAAHLGGLGSVEGVAKAKGEIFEG-LADDGVAVINADDSFAGLWQ 229 Query: 254 -----KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLP 307 + +++ NAG ++ GY A+H+ + +S + P+P Sbjct: 230 SLAGRRRIVRFGLNAGD--VTAGY-----------ALHSAGCDLQLSTPAGERALHLPVP 276 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G + NAL A + +++G+ V E L V GR + R G + +D + +N Sbjct: 277 GLHNIRNALAATAVALSMGVSLDAVAEGLAGFAGVKGRLQR--KPGRHGALLIDDTYNAN 334 Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGD 393 M ++ SG+ ++V G G+ Sbjct: 335 PASMRAAIDVLASHSGKRLLVVGDMGE 361 >gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Microcystis aeruginosa NIES-843] Length = 450 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 48/325 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +++DSR I++G F+A+ G+ +GH FI AI +GA ++V Q S SN Sbjct: 30 VSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIEKGAATLIVD-----QPVSVNSSSN 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+ +V NT + A + ++A+TG+ GK++ + + G Sbjct: 85 IPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATQG------KV 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIA- 206 T++++ +N + P K L L TH S +E G + I L+A Sbjct: 139 HKTLANY--NNEIGVP------KTLLELDE---THNSAVIEMGMRGRGE-----IALLAQ 182 Query: 207 ------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 TN+G HI ++ A AK L E P S A++ D E KR Sbjct: 183 ITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAE-SPSSSIAVLNYDHPLLTETAKRV 241 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ G+ G I + + T+ V G DF+ PL G N + A Sbjct: 242 WQG--ETITYGFSGGDIVGELL------DLTTLRVNGLDFN--LPLSGRHHALNFMAALA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR 345 + +GID + E + K+++ GR Sbjct: 292 VAKILGIDWTSLQEGI-KVNLPSGR 315 >gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099] Length = 477 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 82/336 (24%), Positives = 127/336 (37%), Gaps = 24/336 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ + P+ I+ +S DSR +Q G F AI G DGH F AI GA +VV Sbjct: 10 LVAAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R PI+VV++ L + I+AVTG++GK++ + Sbjct: 70 AEG----KLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G + + AQ P+ LA+ + E + Sbjct: 126 RHVLSAVG----------KVHASAQSFNNHWGVPLTLAR-----MPDNCDYAVFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + ++ T + H+ + + AK +FE L P E A++ DD Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEP-EGAAVLNRDDG 229 Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 K + K AH AG V G + C +H + + + G D PG Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 V N L G +G D V L L GR Sbjct: 290 HMVQNVLAVLGAAQLVGADLNKVALALADLSAERGR 325 >gi|169344245|ref|ZP_02865227.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495] gi|169297704|gb|EDS79804.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495] Length = 874 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 174/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 R+ L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RRILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 I--HLKKVCAI--HNKQQVTISVEGKDF------DFLFPLPGEFQ--VYNALVAAGLCIA 324 + +LK+ I + + + + GK++ + F + G+ + + NA+ A + Sbjct: 637 LQENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GVNVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus metalliredigens QYMF] gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens QYMF] Length = 460 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 133/324 (41%), Gaps = 37/324 (11%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168 K E +AV G+ GK++ S + + + S L PT + + N S Sbjct: 109 KKYEKAIAVAGSHGKTTTTSLISLLMEYSNLD-----PTILVGGELDEIGGNIKIGQSQH 163 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 ++ +A Y+ S L + GI L N+ DH+DY + + + Sbjct: 164 FITEACEYVES-------------FLKFYPFIGIIL------NIDEDHLDYFKDIE-HIK 203 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIH 286 + + F + +PKE I DDA+ +E+ + + C V++ G + K F+ + Sbjct: 204 SAFKKFAQRIPKEGFLIASYDDAHVREISR---DLDCHVITYGIKTKSQFMAHNIEFSFE 260 Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +S EGK F +PG VYN+L A +G+D + +H+ + + R Sbjct: 261 GLPSFDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATTYVLGVDPVAISKHITRFKGIHRR 320 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGK 404 F+ +G +G ++ DYAH + L+ + +I VF R Q K Sbjct: 321 FDLLG-EVKGAKVIDDYAHHPVEIRATLEAAKKYPHKKIWCVFQPHTYSRTQALLKDFAK 379 Query: 405 IALDLADIAIVTDDNPRSEDPEKI 428 + LAD I+TD E E I Sbjct: 380 -SFYLADHVIITDIYAAREKDEGI 402 >gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Halanaerobium praevalens DSM 2228] Length = 465 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 164/374 (43%), Gaps = 42/374 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+ E+ DSR ++ G++F+AI+G +DGH ++ +A+ GA A++V S I++ Sbjct: 25 KVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEAVKNGASAVIVDRN------SPAIQA 78 Query: 89 NTP---ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144 P +L V++T K L A K + ++ +TG++GK++ + + S Sbjct: 79 AYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAGKTTTKDMIFSVL------S 132 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIK 203 + T ++ +N++ P L+ L G ++ E GL + +D + Sbjct: 133 EKYYCLKTEGNY--NNQIGLP--------LTLLRLDGREDFAILEMGMSGLAE--IDLLA 180 Query: 204 LIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 IA G TN+ H++ + + AK L + L ++ AI+ D+ Y+K++ Sbjct: 181 KIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTAADT-AILNYDNQYTKKI--- 236 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLPGEFQVYNA 315 N+ + + G++ K + N + T+ E K++ F+F G+ +YN Sbjct: 237 GTNSKAQTIYFGFE-KGADARIENYFFNSKTETLKFEFTYQAKNYKFIFNKAGKHNLYNI 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + + + + L K R EF+ ++ I Y S++ L Sbjct: 296 LPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALDV 355 Query: 376 IRTITSGRIIVVFG 389 + I + R I + Sbjct: 356 LEQIKAKRKIAILA 369 >gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Parasutterella excrementihominis YIT 11859] Length = 462 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 31/344 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K + VS DSR ++ +F AI G + DGH F+ A GA A VV+ + Sbjct: 28 KFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQAASDAGAAAAVVTHFVPV--------- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V +TR+ L A + K ++AV G++GK++ V I + +G Sbjct: 78 SLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNGKTTTTQMVLSIIKERFQEGAWVG 137 Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +++ L P + A G+ H+ G + + I G Sbjct: 138 TEGNLNNELGVSLMLWKLRPEHQAACFEV----GMNHI-------GEMRPLVSAIAPTIG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 + TN RDH ++ + + +F +L P++ A+I A D ++ E K A N RV Sbjct: 187 TVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVAVINAADPFAVEWRKMAGNN--RV 243 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G ++ C + ++ G+ D +PG+ + NA+ AA + A+G Sbjct: 244 VTFGTPDSDVY---ACEVEGTAFRLVTPIGQ-IDIELKVPGKHNIVNAVNAAAVLFAMGR 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 D + + LE V R E V + G + +D ++ +N M Sbjct: 300 DLCDIKKGLENFEAVSHRGEVVTLDD--GSVVIDDSYNANPDSM 341 >gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderiales bacterium 1_1_47] Length = 462 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 148/344 (43%), Gaps = 31/344 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K + VS DSR ++ +F AI G + DGH F+ A GA A VV+ + Sbjct: 28 KFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQAASDAGAAAAVVTHFVPV--------- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V +TR+ L A + K ++AV G++GK++ V I + +G Sbjct: 78 SLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNGKTTTTQMVLSIIKERFQKGAWVG 137 Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +++ L P + A G+ H+ G + + I G Sbjct: 138 TEGNLNNELGVSLMLWKLRPEHQAACFEV----GMNHI-------GEMRPLVSAIAPTIG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 + TN RDH ++ + + +F +L P++ A+I A D ++ E K A N RV Sbjct: 187 TVTNTMRDHQEFLASLEETAKENGEVFAQL-PRQGVAVINAADPFAVEWRKMAGNN--RV 243 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G ++ C + ++ G+ D +PG+ + NA+ AA + A+G Sbjct: 244 VTFGTPDSDVY---ACEVEGTAFRLVTPIGQ-IDIELKVPGKHNIVNAVNAAAVLFAMGR 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 D + + LE V R E V + G + +D ++ +N M Sbjct: 300 DLCDIKKGLENFEAVSHRGEVVTLDD--GSVVIDDSYNANPDSM 341 >gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM 10] gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Microtus str. 91001] gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis FV-1] gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis CO92] gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10] gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Antiqua] gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CO92] gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Pestoides F] gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis CA88-4125] gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis Angola] gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Nepal516] gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia pestis Pestoides A] gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D106004] gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis D182038] gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia pestis KIM D27] gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis Z176003] gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 458 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 42/353 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV+ D+R + AG +FVA+ G + DGH F AIA GA A++VS + Sbjct: 28 EITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RLLV 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L FA+ + + P I+A+TG+SGK+SV I ++ G + G Sbjct: 79 GGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYTAG 138 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F D + P+ L L + + + A+ G + D + + Sbjct: 139 ------NFNNDIGV----PLTL---LRLTAEHDFAVIELGANHVGEIAYTTDLSRPESAL 185 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKR 259 NL H++ + AK +F LP AII AD ++K V + Sbjct: 186 VNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRF 244 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + +A + + +H+ T+++E PLPG+ + NAL AA Sbjct: 245 SPHAAEHIDFYASDVRITPQLTSFTLHSPFG-TVAIE-------LPLPGQHNIANALAAA 296 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 L +++G D A V + L +L VPGR V G++ +D ++ +N MI Sbjct: 297 ALAMSVGADLAAVRQGLAQLQAVPGRLFPVPLAE--GQLLLDDSYNANVGSMI 347 >gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 476 Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 44/370 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++DSR ++ +++ I+G + DGH FI A A GA A++ S + L + I + Sbjct: 38 IHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANGAAAVLCDSDH-LPAWQGKIDAG 96 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I+ V +T + + A+ ++ ++AVTG++GK++ + + +G Sbjct: 97 --IVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTKDLIASV--------LSMGY 146 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + +N + P ++ L A + + G+ H A S G ++ G Sbjct: 147 QTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGE-------VRPHIG 199 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H++ +++ AKM +F + K+ A+I DD Y + ++ R + RV Sbjct: 200 VITNIGSAHLENLGSKENTLKAKMEIF-GTMEKDDIALINGDDPYLRRIVARDY----RV 254 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + VG + LK + + +G F F + PG VYN L+A I IG Sbjct: 255 VRVGIREPDADLKAEAIREDLSGLYFEADGVPFHFKW--PGIHNVYNCLIA----IWIG- 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYVDYAHTSN--SLEMILKNIRTI 379 HL+ + G FV + +R GG +V+ A+ +N S+ + + + Sbjct: 308 ----RYYHLDDAAIQAGLDAFVPSGNRMQMAEVGGLRFVNDAYNANPESMRAAMDTVCAV 363 Query: 380 TSGRIIVVFG 389 GR I V G Sbjct: 364 AEGRKIAVLG 373 >gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus pumilus SAFR-032] Length = 454 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/331 (21%), Positives = 143/331 (43%), Gaps = 32/331 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E +I+ V++D+R + G +F+ ++G +GH F +A+ GA A++ + + Sbjct: 22 FGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKET------ 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+++VD+T L A + ++ +TG++GK++ + + Q ++ Sbjct: 76 NPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ----TT 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +Q+ T +F +N + P I LS + + + S+ G + + + Sbjct: 132 YQVHKTD--GNF--NNHIGLPLTI-----LSMPKGTEIAVLEMGMSAKGEIEFLSNLAEP 182 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 A TN+G H+ +++A +AK + + L KE Y D + +RA Sbjct: 183 DAAVITNIGESHMQDLGSREAIADAKCEITKGL--KEDGTFYYLGD--EPLIRERATQLS 238 Query: 265 CRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +V + G K H+ ++ + VEG FL P+ G+ V NAL A Sbjct: 239 QQVKTFGEADDCDIKVTHINQLA-----EGTEFQVEGYAQGFLIPVLGKHNVKNALAAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + G++ + + L + + R E T Sbjct: 294 IGQHFGLNERQIAQGLMQTKLTGMRLELFKT 324 >gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces albus J1074] gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces albus J1074] Length = 474 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 36/284 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR G +F A G + DGH + A+ GA A++ AT P LVV Sbjct: 34 DSRLAAPGSLFAAFAGERADGHDYAATAVETGAVAVL-----------ATRPVGVPALVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ + L A + + ++A+TG++GK+S V Q+ R + PT + Sbjct: 83 DDVERALGALARAVVERLGTTVVALTGSAGKTSTKDLVAQLLTR-------VAPT-VWTP 134 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR-LDGIKLIA-GSFTNL 212 + +N + P L+ L ++ T H+ +E + G+ R L G+ G N+ Sbjct: 135 GSLNNEIGLP--------LTALRAEADTRHLVLEMGARGIGHIRYLTGLTPPRIGVVLNV 186 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G HI ++ AK L E LP++ AI+ ADD Y +++ R RV++ G Sbjct: 187 GSAHIGEFGGREQIAQAKGELVEA-LPEDGVAILNADDRYVRDMASRTK---ARVVTFGE 242 Query: 273 QGKF-IHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYN 314 + I + V N + T+ D L GE V N Sbjct: 243 APEADIRAENVRLTENGRPAFTLHTPSGCGDVTMRLYGEHHVSN 286 >gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 452 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 24/280 (8%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN DH+D++ + + A + + I+ ADD + + + A G Sbjct: 172 GVITNAEADHLDHYGSWERVREAFVEFGSHVGNMGGTLIVCADDKGAASIGREAREQGTN 231 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V+ G I +V A + Q V++S+ EG+++ F LPG + NA A A Sbjct: 232 VILYGESD--IADARVNASTHGQGVSVSIAFEGQEYAFDIALPGTYNALNATAAFLSARA 289 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SG 382 +G D +++ LE RFE G +G R+Y DYAH + +L + + S Sbjct: 290 VGGDPQGIIQGLESFTGTRRRFELRGIE-KGVRVYDDYAHHPTEVTALLTAAKKVVDPSN 348 Query: 383 RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI--- 432 ++ V+F R + + AL LAD IV D P EDP E I E+ Sbjct: 349 KVHVIFQPHLFTRTKNFYREFAR-ALSLADDVIVLDVFPAREDPIPGVTGELIAREVTSD 407 Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 + +P F +A+ T +E + D+++ G G T+ Sbjct: 408 VTYVPAF------SDAVPTVVERVKPGDIVLTVGAGDVTI 441 >gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis audaxviator MP104C] gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis audaxviator MP104C] Length = 455 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 58/402 (14%) Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFV 133 A L +S+ I + P LV+ R + + + G+ H +AV G GK++ S V Sbjct: 64 AAELVVYSSAIPPDNPELVIARKRGLPVIPRAEMLGRLMHQWKGIAVAGAHGKTTTTSLV 123 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + +R+GL PT I N +A+A S + H S+ Sbjct: 124 AFLLERTGLD-----PTVIIGGEMNGFGNAKAGGGEYLVAEADESDGSFSLLHPSIVI-- 176 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 TN+ DH+DY++T A A R F +P++ A++ DD Sbjct: 177 -----------------VTNVEDDHLDYYRTVDAIRRA-FREFIFKVPRDGVAVLNYDDP 218 Query: 252 YSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFL 303 + +++ AH V++ G Y+ HL CA+ + +V E G+ F Sbjct: 219 FLRQM---AHELPFPVITYGCAPDADYRLAGFHLN--CAV-SSAEVYWRRELLGR---FE 269 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG + NAL + +G++ + L V RFE VG SRG R+ DYA Sbjct: 270 LTIPGRHNLLNALAVVAVGRHLGLEFPEIARALRDFRGVRRRFELVG-ESRGVRVVDDYA 328 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 H ++ L+ R R+I VF R + GK A AD +++ P Sbjct: 329 HHPTEIKATLEAARQTRPKRLIAVFQPHRYTRTKFLHAEFGK-AFTAADQVLLSRIYPAG 387 Query: 423 EDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 E P + A +I I+K R+E + + +QD LV Sbjct: 388 EKPIPGVTARLIRDE---IQKQQRVEPL-----LFEEQDELV 421 >gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Ketogulonicigenium vulgare Y25] Length = 478 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 156/355 (43%), Gaps = 33/355 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ + VS D+R +Q G +FVA+ + DGH F+ A+ +GA A +VS Sbjct: 20 RDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASALEKGAAAALVSR------VPEG 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +N P+L+VD+ L + I+AVTG+ GK+S ++ + +G Sbjct: 73 LPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKTSTKEMLRTVLAAAG---- 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + S + +N P+ LA+ + + GV + + R+ ++ Sbjct: 129 ----RTHASEASYNNHWGV--PLTLAR-MPADTEYGVLELGMSHPGEIAPLSRM--VQPH 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G T + H + + + + K +FE LLP+ + A++ D A S ++ A + G Sbjct: 180 VGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGT-AVVNGDLAVSPILIAAAKDKGA 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGL 321 RV++ G + H ++ + + VT++ G+ + F + G NAL Sbjct: 239 RVITFGETPRNHH--RLTDLRVRAGVTVA-SGRAWRTPFHMKVASAGRHFAVNALAVIAA 295 Query: 322 CIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNS-RGGRIY--VDYAHTSNSLEM 371 A+G+D A L L + GR + + + R GR + +D A+ +N M Sbjct: 296 ADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSM 350 >gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosomonas eutropha C91] gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosomonas eutropha C91] Length = 457 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 94/375 (25%), Positives = 161/375 (42%), Gaps = 46/375 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR ++ G +F+A+ G + DG FI AI +GA A +VS+ + +S+ Sbjct: 27 VSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMVSTDTVI----VPTKSDFGW 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V++TR A+ ++AVTG++GK++V + I + S + T Sbjct: 83 IKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMIAAIFRHEFGSGNVLATTGN 142 Query: 153 ISS-------FAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +++ Q N T + I + A ++YLS ++V Sbjct: 143 LNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQLAAPTIAV-------------- 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 TN G HI++ T +A AK +F L + AII ADDAY++ + R Sbjct: 189 -------ITNAGTAHIEHLGTTEAIARAKGEIFTG-LGAQGIAIINADDAYAQ--LWRQL 238 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++L G + + ++ + + + +PG +YNAL AA Sbjct: 239 AGSRQILDFGITNPAAIRAQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIYNALAAAAA 298 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 A GI + + E L PGR + VG I +D + +N S++ L N+ Sbjct: 299 ATAAGISTTSIAEGLHNFMGTPGRLQKKVGLYQ---SILIDDTYNANPDSMQAAL-NVLA 354 Query: 379 ITSGRIIVVFGCGGD 393 G+ I++ G G+ Sbjct: 355 EMPGKKILIMGDMGE 369 >gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 452 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 157/385 (40%), Gaps = 44/385 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS +S I+ +FVAIV N+ DGH FIP A++ GA+A++VS QD N Sbjct: 23 IQTVSINSNEIKQDALFVAIVANR-DGHDFIPSALSYGAKALLVSKK---QDI------N 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------QQICQRSGLS 143 P +V NT K L A I+++TG+ GK++V + +++ G Sbjct: 73 IPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTTVKEMIVTLLGGKKVHFTQGNF 132 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + +G T+ L TP + A + S G + E I+ Sbjct: 133 NNYLGVPMTV--------LETPQDVDFAVIETGTSVAGEIKAAAEI------------IQ 172 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G H++ +T K L + LPK+ I+ DD + + A Sbjct: 173 PNVAMITNVGASHLENLKTLDGVMIEKGELLKA-LPKDGFCIVNLDD---ERIPAYADKL 228 Query: 264 GCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 C S+ Q I + I V I + K++ + P G+ + N+++A Sbjct: 229 DCNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIAS 288 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +A ++ L++ + + GRF N + + Y ++ +++ + ++ Sbjct: 289 VVAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIADLAEFDG 348 Query: 382 GRIIVVFGCG--GDRDQGKRPIMGK 404 ++I + GD Q MG+ Sbjct: 349 KKVIAITSMRELGDEGQNYHRKMGQ 373 >gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M6190] gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis ES14902] Length = 445 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 457 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 34/304 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S+DSR I+ G +F+ + G +G +F+ A+ G SA + + R N Sbjct: 25 ISGISTDSRTIKEGELFIPLKGENFNGEMFVEDALKIG-------SASLTESVNNVGRYN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ VDNT++ L A K +AVTG++GK++ + + S + Sbjct: 78 KPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKTTTKDMIYDVL------SMKYNV 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 T +F +N + P I+ L+ + VE G + R +K IA Sbjct: 132 LKTQGNF--NNEIGLPLTIF---RLNKKHDMAI----VEMGMSGFGEIRR--LKNIADPN 180 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAG 264 +TN+G HI+ +++ AK L E KE +I ADD ++K + G Sbjct: 181 VAVYTNIGVAHIEKLGSRENILKAKSELVENF--KEGYTVILNADDDM---LVKLTNKKG 235 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + ++ G + + + + ++G D +PG+ VYN+L A + I Sbjct: 236 PQYITYGIDNGDVKAFDIEYKEESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAICIGIK 295 Query: 325 IGID 328 G++ Sbjct: 296 FGVN 299 >gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio brasiliensis LMG 20546] Length = 452 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R I VS+D+R I AG +FVA+VG + D H F QA+ GA A++VS Sbjct: 20 NDRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQAVESGAGALLVSR---------I 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + S+ P L+V +T+ L + ++ +A+TG++GK++V V I ++ G F Sbjct: 71 VESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAGKTTVKEMVASIMEQKGRVLF 130 Query: 146 QIG 148 G Sbjct: 131 TAG 133 >gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax ferrireducens T118] gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodoferax ferrireducens T118] Length = 480 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 32/383 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 I V +D+R + G +FVA+ G D H F+ QA AQGA A V A D A +R+ Sbjct: 29 IERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVA-AVCQASDAGDVEAKLRAV 87 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+V +T+ L+ A++ + ++AVTG++GK++V + I L +++ Sbjct: 88 GLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAI-----LRAYK-- 140 Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205 P + +S+ +N + P + + ++ G+ H A+ + Q + L+ Sbjct: 141 PQAYLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHPGEIATLAAIAQPT---VALV 197 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N R+H+++ T + + + LP A+ ADD YS A AG Sbjct: 198 ----NNAQREHLEFMATVERVAQENGSVIDA-LPAHGVAVFPADDTYSP---LWADKAGS 249 Query: 266 R-VLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 R V+ G +V + QV +S + P+ G V N+L A Sbjct: 250 RVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKNSLAAV 309 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI 376 +A G+ + L V GR + +I VD ++ +N S+ + + Sbjct: 310 ACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRAAIDVL 369 Query: 377 RTITSGRIIVVFGCGGDRDQGKR 399 ++ R++V+ G DQG + Sbjct: 370 ASLPGPRLLVLGDMGEVGDQGPQ 392 >gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM 13965] Length = 610 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + E+ S S ++ G +FVAI G + DG F +A+ +GA +V Sbjct: 25 VGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGARVVVAQQPPGQPLPPGVS--- 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V R LS A+ YG HP ++ VTGT+GK++ + + +G+ + Sbjct: 82 --WLQVPCARSALSRLAANRYG-HPSRRLVVVGVTGTTGKTTTTLLLHHLLSATGIPAGL 138 Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG LTTP P+ L + L ++ G +E SS G DQ R+D + Sbjct: 139 IGSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQGADQRRVDDVAFD 198 Query: 206 AGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G TNL +H++YH T + Y AK R F ++P +++ +A Sbjct: 199 LGVVTNLAPLEHLEYHPTYEDYAAAKGR-FVAMIPPGGGVLMHEGEA 244 >gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 498 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 35/274 (12%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKAL 174 +A++GT GK++ ++ + I +++ ++ PT I D N +++A+A Sbjct: 126 IAISGTHGKTTTSAMISTILKKA-----ELDPTYVIGGEVPDIGGNAHLGKGNLFVAEAC 180 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 Y SS LD + I G TN+ DH+DY+ + NA F Sbjct: 181 EYNSS------------------FLDLVPSI-GVITNIEEDHLDYYGNLEEIVNA-FGHF 220 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVT 292 L+ K ++ DD + V A + C+ S+ + + K + + Sbjct: 221 ANLIAKNGLLVVNDDD---RNVAVAAKRSVCKRETYSLRHTSHWYAKKILPTTQGINKFR 277 Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + GK F DF +PG + NAL A +C +IG+D ++ LE RF+ V Sbjct: 278 VYNRGKIFGDFWLKIPGSHNILNALAAIAVCTSIGVDKEIIKTSLESFKGAKRRFQIVAI 337 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 + I DYAH +++ LK R + R I Sbjct: 338 KNN-ITIIDDYAHHPTEIDVTLKAARELYPARKI 370 >gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces violaceusniger Tu 4113] Length = 479 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 37/234 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A+ G + DGH F +AI GA A++ + D + P +VV Sbjct: 34 DSREVRPGSLFAALPGERVDGHDFARKAIEAGATAVLAARPVGTAD------APVPAIVV 87 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + A + + ++A+TG++GK+S + Q+ QR G + + G Sbjct: 88 PDVIAAMGALARAVVERLDATVVALTGSAGKTSTKDLIAQLLQRRGPTVWTPG------- 140 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHRLDGIKLIA-------G 207 + +N + P L+ +S+ T H+ +E + G I+ +A G Sbjct: 141 -SLNNEIGLP--------LTAMSADEATLHLVLEMGARGKGH-----IRYLATLTPPRIG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 N+G HI ++ AK L E L P E A++ ADD + +M R Sbjct: 187 LVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEGGVAVLNADDPLVRAMMSR 240 >gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM 555] gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016] gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555] gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 457 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 132/335 (39%), Gaps = 42/335 (12%) Query: 60 IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 I Q I + +V ++A S + + I ++D F + H NI A Sbjct: 61 ISQNITSDIDLVVYTAAISKNNEELLKAKDLNIPLMDRAE-----FLGEIMKGHKYNI-A 114 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSY 176 V+GT GK++ S + I + L PT + N SP ++ +A Y Sbjct: 115 VSGTHGKTTTTSMLSSITLEANLD-----PTILVGGNLDIIGGNVRIGNSPFFITEACEY 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 S L GI L N+ DH+DY++ + NA ++ F + Sbjct: 170 KESF-------------LKFFPFIGIIL------NIDADHLDYYKDIEEIQNAFIK-FGK 209 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 L+PKE + ADD + + K N C V+S G + I K +C + + V Sbjct: 210 LIPKEGYLVCCADD---RRMEKIISNVNCNVMSYGIETGDITAKNIC-FDKEGRAFFEVY 265 Query: 297 GKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 D F +PGE + NAL + + + + I ++ L+ RFE G Sbjct: 266 KSDKKLFSLNLSVPGEHNILNALASISVSLILNISVDNIINGLKSFKGTHRRFEIKG-QR 324 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +G + DYAH ++ L + RII VF Sbjct: 325 KGVVVIDDYAHHPTEIKATLNAAKNYPHKRIICVF 359 >gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeobacteroides DSM 266] Length = 472 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 85/372 (22%), Positives = 147/372 (39%), Gaps = 47/372 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G IFVA+ G DGH +I + A+GA +V A+ + + LVV Sbjct: 36 DSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAWYESEGAPAAPEGCGFLVV 95 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ L A+ ++AV G++GK++ V + G T S Sbjct: 96 EDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAV--------LGTGFTVQTSK 147 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 +N L P + L G+ V + + G + L+ + G TN+G + Sbjct: 148 GNLNNHLGVPLTL-----LQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLTNIGHE 202 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+++ + + RLF L + ADD + KE + G G Sbjct: 203 HLEFLLNLEGVAAEETRLFRYLQQHGGTCFVNADDLWLKEAAE------------GLTGS 250 Query: 276 FIH-----LKKVCAIHNKQQVTISVEGK-DFDFL---------FPLPGEFQVYNALVAAG 320 F + + C + + + G+ F+F+ G+ V NAL AA Sbjct: 251 FTYGTADDSQIAC---QARHIAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAA 307 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT 378 + G+ + + LE L PG ++ + GG + ++ Y S+S+ + + + Sbjct: 308 VGTYFGLSLEQIKKGLEALRPSPG-WKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVD 366 Query: 379 I-TSGRIIVVFG 389 I SG+ I V G Sbjct: 367 IPCSGKKIAVLG 378 >gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma centrale str. Israel] Length = 463 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 80/363 (22%), Positives = 155/363 (42%), Gaps = 32/363 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV AY Sbjct: 23 LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVDEAY------VPTADC 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T + L A+ ++A+TG++GK++ + + G + Sbjct: 77 GPLVAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + A N L P+Y A ++ V +E + + +D + IA Sbjct: 133 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 179 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H+++ ++ + AK+ +F + + A++ D Y ++ A + Sbjct: 180 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R++S G G ++ +T+ G++ Y+ + A + A Sbjct: 239 RIISFGV-GAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVGRAF 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRTITSG 382 ID +E+ + GR + T +G I +D A+ +N L M+ ++N+ + Sbjct: 298 SIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHA 357 Query: 383 RII 385 R++ Sbjct: 358 RVL 360 >gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Sphaerobacter thermophilus DSM 20745] Length = 463 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 114/468 (24%), Positives = 189/468 (40%), Gaps = 59/468 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR I+ G +FVA+VG + DGH F+ +A A+GA A +V A+ Sbjct: 25 VRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFARGAVAALVDRAH----VPRLPEGL 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV +T L A+ H ++ +TG+ GKSS V + +S + Sbjct: 81 GPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSSTKEVVWSV------ASQRFRA 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + SF +N + P LS + T V V + + IA Sbjct: 135 IRSQRSF--NNEIGLP--------LSLMEIGSDTEVVVLEIGGAYAPGEISRLAEIARPT 184 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+ H+ + +A K L LP++ A++ DD V A C Sbjct: 185 IGVVTNVSHSHLARMGSLEAIAATKAELPAS-LPEDGVAVLNGDDL---RVRLMADKCRC 240 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNAL 316 RV+ G L C + + + ++G FD L PL G+ V+ L Sbjct: 241 RVIRYG-------LAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVL 293 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILK 374 + +A+G+ V E L L + + + GG +D + +N S L Sbjct: 294 AGVSVGLALGMS---VEETLPGLRDPSIQLRLLVVPAIGGATLIDDTYNANPTSSLAALN 350 Query: 375 NIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 + + + R I FG G ++G R I+GK A + D R E + + Sbjct: 351 LLAELPARRRIAAFGDMLELGSYEEEGHR-IVGKRAAAVVDRLFTMGPRARIIADEAVAS 409 Query: 431 EII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476 + + K + I+A++ E + + DV++V G +G + H+V Sbjct: 410 GLAPDAVVAVDTKQDLIDALK---ETMREGDVVLVKGSRGIQLEHVVA 454 >gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B1 str. Okra] Length = 462 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 49/374 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSN 89 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS +FS + Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEI----NFSEGKVGKA 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 + I+ V+N K L A K ++A+TG++GK+S V + +++ Sbjct: 83 SYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAE----KYKVFK 138 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 139 TE--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII-- 189 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +++ AK+ + + K+S II DD +++ + +V Sbjct: 190 --TNIGISHIENLGSRENILKAKLEI-TDFFCKDSILIINGDD----DLLSNFESDKFKV 242 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQVYNAL 316 +G KF N + + E +FD L +PG+ V N+L Sbjct: 243 YKIGTDKKF--------DFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + I+ + ++ L R + V +G I D Y + +S++ + Sbjct: 295 TAIACGRVLDINYRDIQTGIKNLKATSMRLDIV--KEKGFTIINDCYNASPDSMKAAIDV 352 Query: 376 IRTITSGRIIVVFG 389 ++ I R I + G Sbjct: 353 MKNIKGKRTIALLG 366 >gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [delta proteobacterium NaphS2] Length = 476 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 50/373 (13%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 +SDSR + G +F A+ G + DGH F+ QA+ +GA +VV Y++ S R ++ Sbjct: 34 NSDSRRVHPGDLFWALKGERFDGHDFVHQAVREGASGVVVQREYTI---SVENRPEIAVI 90 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 VDNT + L A+ +H + A+TG+SGK++ I + T+ Sbjct: 91 AVDNTLRALGDLAAWWRRQHTAKLAAITGSSGKTTAKEMTAAILEME---------NKTL 141 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT--- 210 + N L P+ L K L + V + + +H + RL IAG T Sbjct: 142 KNPGNHNNLIG-LPVTLLK-LDESHKRAVVEMGM---NHKGEIARL---TEIAGPDTAAI 193 Query: 211 -NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H++ AK L P ++ I+ DDA +MK A + ++ Sbjct: 194 LNVGMAHLERLGDMDGVAEAKTELIAHASP-DTKIILNGDDAV---LMKHATKFDRKFVT 249 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAG 320 G +KK IH T ++G FD + P+ G V NAL AA Sbjct: 250 FG-------MKKGNHIHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNALAAAA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM-ILKNIR 377 + +++ + L V GRF+ + G I +D + +N +LE +L ++ Sbjct: 303 IALSLKEPVENIARGLRNFKGVKGRFQCIPL--EGDIILIDDTYNANPSALETALLSALK 360 Query: 378 TI-TSGRIIVVFG 389 + GR+IV G Sbjct: 361 MVDRDGRLIVGLG 373 >gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga olearia TBF 19.5.1] Length = 468 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 39/250 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I G +FVA+ G + DGH FI +A +GA +VS + S I Sbjct: 29 ISTDTRTIHKGDLFVALEGERFDGHYFIDEAFKKGAIGAIVSRE---------VESKNII 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T K L A + ++AVTG++GK++ + I R T Sbjct: 80 IKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKTTTKEMLGYILTRE---------FKT 130 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA------ 206 + + N ++ L+ L T ++V ++ + L GIK + Sbjct: 131 VKAKGSYNN-------FVGVPLTLLEMDRHTQLAVLE----METNLLGGIKRLCEIAKPS 179 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G H+ + +T++ + K L E LP++ A++ ADD Y ++ + + Sbjct: 180 VGVVTNIGDTHLQFLKTREGVYQEKSELVES-LPEDGVAVLNADDPYVLKMKEISRTK-- 236 Query: 266 RVLSVGYQGK 275 R+++ G + K Sbjct: 237 RIVTFGVENK 246 >gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2] Length = 463 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 31/331 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +++ +++D+R I+AG +F+AI G DGH F+ QA+AQGA A++V + +Q Sbjct: 20 QNQQVLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVIVDHSVKVQ----- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P +V + R L + + + +A+TG+ GK++V I + G Sbjct: 75 ----VPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEMCAAILSQHGEV-- 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +T +F +N + P + L + + A+ G + D +K Sbjct: 129 ----LATKGNF--NNDIGVPLTL-----LRLEPKHQYAVIELGANHIGEIAYTTDLVKPD 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+ HI+ + AK +F L A+I AD Y + + Sbjct: 178 VAVVCNVAAAHIEGFGSLDGVAQAKGEIFSG-LKAGGIAVINADSPYVDYWLTSLDKSTL 236 Query: 266 RVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 S+ Q + IHL K+ + + + P+ G+ + NAL+A L Sbjct: 237 CQFSMSQQLDVWPENIHLDKL----GRAGFDLCTPTERIAVQLPIAGKHNITNALIACAL 292 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + +G+ A V + L + +V GR + N Sbjct: 293 TLPLGVTLAHVAQGLASMPMVQGRVNLIEVN 323 >gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Aeromonas salmonicida subsp. salmonicida A449] Length = 451 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 164/371 (44%), Gaps = 47/371 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+D+R + G +FVA+ G + D H F QA+A GA A++V SL Sbjct: 23 EITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAVAAGASALLVERELSLA-------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV ++ K L + + +LA+TG+ GK++V I + G Sbjct: 75 -IPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTTVKEMTTAILRHEG------E 127 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIA 206 +T +F +N + P + + + G H A + L R D A Sbjct: 128 VLATAGNF--NNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSLA--RPD-----A 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + + F+AK +FE L ++ AI+ AD A+ + +A C Sbjct: 179 ALINNVAAAHLEGFGSLEGVFHAKSEIFEG-LSEQGTAIVNADSAFWPK--WQAAGIHC- 234 Query: 267 VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 S+ Q + H + + CA + V ++ G + +PG V NAL AA Sbjct: 235 AFSIEDQNQPFHARGIALNGQGCA----EFVMVTPNG-ELSLTLAIPGRHNVANALAAAA 289 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 C+A+G A V LE++ V GRF GG VD + + S+E +L I +T Sbjct: 290 GCLALGASLASVKAGLEQMAPVKGRF---CVQRWGGLTLVDDTYNA-SVESVLAGIDALT 345 Query: 381 S--GRIIVVFG 389 + G ++VFG Sbjct: 346 AMGGYKVLVFG 356 >gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301] Length = 455 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 42/320 (13%) Query: 18 LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 L P+Q E R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 Y D +A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + G + P + +N + P + + ++ V + + Sbjct: 129 AAMLAVRGPV---LKPEANY-----NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQI 178 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + R+ + TN+G HI ++QA AK L + L AI+ AD+ Sbjct: 179 AELARIAQPNI--AVITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHRL 235 Query: 254 KEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +R + CR + QG+ I L+ T+ VEG+ F PLPG Sbjct: 236 IATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGAH 282 Query: 311 QVYNALVAAGLCIA--IGID 328 N L AGL IA +G+D Sbjct: 283 NALNFL--AGLAIAQELGLD 300 >gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1] Length = 452 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V++D+R + AG +FVA+VG + D H F +AIA GA+A++VS + Sbjct: 24 LNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGAQALLVSKHLPVA--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV++TR + + + ++A+TG+SGK+SV I ++ G + + G Sbjct: 75 VPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGETLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N P + L + + + A+ G + D +K + Sbjct: 135 L--------NNDYGVPMTL-----LRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---------YADDAYSKEVMKRA 260 NL H++ + AK +F+ LP AI+ + + K V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPAHGIAILNDESNDWLNWQNTLQDKTVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 AG + + I + + + ++ + + PLPG + NAL AA Sbjct: 241 PQAG----ECDFSARDIRIAQ-----DGTHFVMNTPRGTAEIVLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++ + V + L+ L VPGR Sbjct: 292 LALSVDAPLSAVQQGLKNLQSVPGRL 317 >gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia mollaretii ATCC 43969] Length = 450 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 168/402 (41%), Gaps = 42/402 (10%) Query: 13 ELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 EL+N + + Q +I EV+ D+R + AG +FVA+ G + DGH F A Sbjct: 3 ELLNAEFIVSDKQGDNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA-------- 54 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 V++ S + P LVV +TR L FA+ + + P ++A+TG+SGK+SV Sbjct: 55 -VAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKTSVKE 113 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 I + G + G +F D + P+ L L + + + A+ Sbjct: 114 MTAAILRECGNVLYTAG------NFNNDIGV----PLTL---LRLTAEYDFAVIELGANH 160 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 G + D + + NL H++ + AK +F LP AII AD Sbjct: 161 VGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSN 219 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + HN RV G Q + V T+ PLPG Sbjct: 220 DWPHWQETLHNK--RVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPLPG 277 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN- 367 + NAL AA L +++G D + V + L +L VPGR + + G++ +D + +N Sbjct: 278 RHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLAT--GKLLLDDTYNANV 335 Query: 368 -SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 S+ + + + R++VV GD + +G+ A+D Sbjct: 336 GSMTAAAQVLAEMPGYRVMVV----GDMGE-----LGETAID 368 >gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 7942] Length = 455 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 44/321 (13%) Query: 18 LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 L P+Q E R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 Y D +A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128 Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + GP T +++ +N + P + + ++ V + + Sbjct: 129 AAMLAVR-------GPVLKTEANY--NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQ 177 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + R+ + TN+G HI ++QA AK L + L AI+ AD+ Sbjct: 178 IAELARIAQPNI--AVITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHR 234 Query: 253 SKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +R + CR + QG+ I L+ T+ VEG+ F PLPG Sbjct: 235 LIATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGA 281 Query: 310 FQVYNALVAAGLCIA--IGID 328 N L AGL IA +G+D Sbjct: 282 HNALNFL--AGLAIAQELGLD 300 >gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC 19061] Length = 460 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 96/381 (25%), Positives = 161/381 (42%), Gaps = 54/381 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN V +DSR I G +F+A+ G K D H F + QGA A++VS + Sbjct: 29 QINTVKTDSRKIVCGGLFIALKGEKFDAHDFAADVVKQGAGALLVSRRLDI--------- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P +VV +TR + A + + ++A+TG+SGK+SV I ++ G + + G Sbjct: 80 DCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAG 139 Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIA 206 +F +N + P ++ L + + + G H+ A + + + + Sbjct: 140 ------NF--NNDIGVPLTLFRLTEEHQFAVIELGANHIGEIAYTTAMTRPE-------S 184 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 NL H++ + AK +F L P E AII D +++ G Sbjct: 185 ALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAP-EGTAIINLD----------SNDWGNW 233 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVE-------------GKDFDFLFPLPGEFQVY 313 + Q + H A T VE GK + + PLPG V Sbjct: 234 QHGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGK-IELILPLPGRHNVA 292 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI- 372 NAL A+ L I++G + L L VPGR + ++ G+ +D + +N+ MI Sbjct: 293 NALAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSA--GKTVLDDTYNANTGSMIA 350 Query: 373 LKNIRTITSGRIIVVFGCGGD 393 N+ + SG ++V G G+ Sbjct: 351 AANVLSQMSGYRVMVVGDMGE 371 >gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans Nor1] Length = 259 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 25/222 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R ++AG +F+A+ G + DGH F+ QA+AQGA +++S +D I S + Sbjct: 29 ISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISR----RDI--VIPSGIAV 82 Query: 93 LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ D+TRK L A RL P ++AVTG++GK++ + S F++ T Sbjct: 83 VLTDDTRKALQNLACFHRLRFDIP--VIAVTGSNGKTTTKDMTAAVLA----SRFKVLKT 136 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P + L+ + V V + S G + + G T Sbjct: 137 EA----NYNNEIGLPLTL-----LNLTADHQVAVVEMGMRSKGEIRELAEVALPTVGVVT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 N+G HI+ + + +AK L E + +E I+ AD+ Y Sbjct: 188 NVGETHIELLGSLENIASAKAELVENI--QEGLVILNADNPY 227 >gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella woodyi ATCC 51908] Length = 455 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I V SDSR I +FVA+ G K DGH F A+ GA A++VS +L Sbjct: 21 DTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGASALLVSRELAL------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P L+V +T+K + + L +A+TG++GK+SV V I + + Sbjct: 74 --DIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEMVASILSQHHKVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIK 203 G +F +N + P L+ L +G V A+ G + +K Sbjct: 132 AG------NF--NNEIGVP--------LTLLRLEGDEEYGVFELGANHLGEIDYTSSLVK 175 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 N+ H++ + + AK +F L + A+I DD ++ +VM+ A + Sbjct: 176 PDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNH-LSADGIAVINLDDPFA-DVMRGAASQ 233 Query: 264 GCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 ++ ++ Q + V + + T++ PL G QV NAL A +C Sbjct: 234 FTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAATAIC 293 Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346 +++G+ VL L+ + V GR Sbjct: 294 LSLGLSLEEVLSGLKLVEPVKGRM 317 >gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 50/379 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + +I V+ DSRHIQ G +F+ G DGH + QA+ GA A + +D + Sbjct: 20 QYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGAGA-----TFFQRDST 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGL 142 T +N P++ V+NT L A + Y +H ++AVTG++GK++ ++ + SG Sbjct: 75 LTAPTNGPVVFVENTLTALQQLA-KAYLQHVAPTVIAVTGSNGKTTTKDMLENVL--SG- 130 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 F++ T +N + P L+ L T VS+ E G H ++ Sbjct: 131 -KFRVQKTQG----NYNNEIGMP--------LTILELNEDTEVSILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSK-- 254 + IA TN+G H+ +++ AK + L K IY D+ K Sbjct: 176 LSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGL--KSEGYFIYDGDEPLLKPH 233 Query: 255 -EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 E + AH +SVG K ++ H ++ +T +V D + + GE + Sbjct: 234 VETLTSAHQ-----VSVGLSAKN-DMQCQMVSHLEEGITFTV-NDDVTYTISILGEHNMR 286 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372 NA +A + +G+ + + L L + R + F+ N G + ++ A+ ++ M Sbjct: 287 NATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPN---GAMVINDAYNASPTSMK 343 Query: 373 LKNIRTIT--SGRIIVVFG 389 I T++ G I+V G Sbjct: 344 AA-IDTLSHMKGETILVLG 361 >gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum WM1] gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum WM1] Length = 459 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 80/340 (23%), Positives = 143/340 (42%), Gaps = 48/340 (14%) Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILA 119 AIA G A + + ++A + + P + L + L G K+ EN +A Sbjct: 56 AIAYGQRAENIKEGIDVVVYTAAVHPDNPEYAEAKEKGLPILSRAELLGQMMKNYENSIA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALS 175 V+GT GK++ S + +I L + + PT ++ +S + R+ P +++ +A Sbjct: 116 VSGTHGKTTTTSMITEI-----LLAAEADPTISVGGILNSIGGNIRVGGPG-LFVTEACE 169 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 Y +S ++E N+ DH+D+ + + RLF Sbjct: 170 YTNSFLSFFPTMEV-------------------ILNIEADHLDFFKDIKD-IRHSFRLFA 209 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQ 289 E LP +I D +E+ + C+V++ G YQ + I + + + Sbjct: 210 EKLPPNGSLVINNDIESREEITE---GLPCQVITYGKKPGSRYQAEAIRFDE----YARA 262 Query: 290 QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + ++G D + +PGE VYN+L AA +C +GI+ L+ + L++ RFE Sbjct: 263 TYDLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLKRFTGTNRRFEK 322 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G S G I DYAH + L+ + ++ V F Sbjct: 323 KGELS-GVTIIDDYAHHPQEIRATLETAKHYPHNKLWVAF 361 >gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Haemophilus influenzae RdAW] Length = 457 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 140/325 (43%), Gaps = 36/325 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ +++A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEI---SNHAI 242 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 Y K IH H Q T IS +G + + P GE V NAL A L Sbjct: 243 QYFNGKDYSAKNIH-------HTSQGSTFTLISPQG-EIEITLPYLGEHNVKNALAATAL 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346 + +G V LE+ V GR Sbjct: 295 AMNVGATLTDVKAGLEQRSQVKGRL 319 >gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK405] Length = 456 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 96/411 (23%), Positives = 164/411 (39%), Gaps = 65/411 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A V AY Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + +IG T+ +D + G H+ Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L KE I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKEGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +++ A C+++ G I L ++ K ++ D P+ G++ Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLE--ERKDSLSFECNFLDQRIDLPVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + G+ A + + KL + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGVSEAAIAQAFSKLELTRNRTEWKKA-ANGADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +IL+ TI + GR + V + + + G + L + IVTD Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum terrenum ATCC BAA-798] Length = 463 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER++ ++++DSR ++ G +F+AI G + DGH +I A+++GA+A+V+S S+Q I Sbjct: 23 EREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAVSRGAQALVLSRTPSIQ-----I 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + L VD+T L A+ K P + +TG+ GK+S I R Sbjct: 78 PESVLALEVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTSTKEVTASILSR 130 >gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP] Length = 467 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 36/372 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V++D+R +F A+ GN D H ++ QAIAQG A+VV + N Sbjct: 25 VETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIAQGCIALVVEQRMLI---------N 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR L A L K +A+TG+SGK++V +I Q+ + ++ Sbjct: 76 APQIIVADTRLALGELAKWLKAKLNPKTIAITGSSGKTTVKEMAAKILQKLTACADEVLY 135 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 TS +N L P + + L + + + G H+ A + + Q A Sbjct: 136 TSG----NLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIAYTTSITQPD-------AC 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--------YADDAYSKEVMKR 259 N+ H++ + AK ++ L P E AII + + S++V Sbjct: 185 VVNNVAAAHLEGFGSLAGVAQAKGEIYRGL-PPEGIAIINQASYSSAWQTEIGSRKVQSF 243 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A V + + +HL N + + + P GE V N L A+ Sbjct: 244 ALYPSAEHKPVDFSAENVHLHL-----NGSTFMLHSPQGEIEINLPYLGEHNVSNVLAAS 298 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L +A+G D A + LE+ V GR + N I Y +S++ ++ ++ Sbjct: 299 ALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINRYCLLIDDTYNANVDSMKSAVQVLKNY 358 Query: 380 TSGRIIVVFGCG 391 + RI V G Sbjct: 359 QAFRIFAVADMG 370 >gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Fervidobacterium nodosum Rt17-B1] Length = 423 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 43/314 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G +FVAI GN DGH F+ A GA A +V ++ ++V Sbjct: 16 DSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN----------QIIV 65 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 NT +FL A + K I+ +TG++GK+S V + +S IS+ Sbjct: 66 PNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVL------------SSEISA 113 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F + L + + L+ SY + V + + G ++ G N+G Sbjct: 114 FKNEGNLNSEIGLPLSIINSY-RGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSA 172 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+ + + F K ++ E A++ DD +R CR G Sbjct: 173 HVGVAGSVENIFKGKWQIVE----NSKEALVNFDD-------ERMRCTKCRYFGTT-GGD 220 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF---QVYNALVAAGLCIAIGIDSALV 332 +I K+ +N ++ E + +F + LPG + +ALVA G IA ID Sbjct: 221 YILSKRE---YNGSSTILTFEYEGEEFYYQLPGYWTKPMALSALVAFG--IADMIDVLFN 275 Query: 333 LEHLEKLHVVPGRF 346 +L + GRF Sbjct: 276 PLNLANYKPLKGRF 289 >gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes OXCC13] Length = 455 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 141/341 (41%), Gaps = 35/341 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSATIRSN 89 VS+D+R + AG +FVA+ G D H F+ + +G A+V + Y L Sbjct: 26 VSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAERIPENYPL---------- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIG 148 P L+V +TR L A ++ VTG++GK++V + I + ++F + G Sbjct: 76 -PALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFK----TAFGEDG 130 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +T +F +N + P I+ + + G+ HV A + Q + Sbjct: 131 RLATSGNF--NNDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIAQPTV------- 181 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G N R+H ++ QT A + LP+ A+ AD+ YS + A R Sbjct: 182 GLVNNAQREHQEFMQTVLAVAEENGTVIRS-LPENGTAVFPADEPYSDLWTRYAGARQIR 240 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 +G K K V I EGK + G+ V NAL AA + G Sbjct: 241 TFGLGKDAKVSGQYK--NEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSAG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 ID +++ LE V GR E N+ G + +D + +N Sbjct: 299 IDWQTIVKGLEAFSPVHGRLE--KKNAFNGALLIDDTYNAN 337 >gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Vesicomyosocius okutanii HA] Length = 426 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 55/369 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K V +D+R G +F+A+VG+ D H +I QA GA AI+ + + + S Sbjct: 22 KFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGAVAIIANKS---------VDS 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSS 144 PILVV++T+ LS AS H +NI +A+TG++GK++ + + I S Sbjct: 73 QLPILVVNDTQTALSTIASW----HLQNIKPIVIAITGSNGKTTTKNMLANIL------S 122 Query: 145 FQIGPTSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGI 202 Q T + +N L P + + L K Y + G H+ + + Sbjct: 123 LQAPTLKTQGNL--NNHLGVPMTLLTLEKQHQYAVIEMGANHLG-----------EISHL 169 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + I + + +D H F+ ++ E+ K S II ++ +V H Sbjct: 170 RKIVNPDIAIVTNTLDAHIGTFGGFDNLVKAKGEIYSKNSKNIINTQSIFTGDVSFTPHG 229 Query: 263 AGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G + ++ K IH +Q+++I++ L G + NAL A+ Sbjct: 230 NTKVSGNNGDIFASNIVNNKFDLNIH-QQKISITLN---------LIGIHNIDNALAASA 279 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRT 378 +GID L+ + LE PGR E + T + RI +D + +N I LK ++ Sbjct: 280 CVYPLGIDINLIKQGLEATKAEPGRLEIIHT--KQFRI-IDDTYNANPYSTIIALKTLQN 336 Query: 379 ITSGRIIVV 387 + +IIV+ Sbjct: 337 FSGEKIIVL 345 >gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 465 Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 112/276 (40%), Gaps = 36/276 (13%) Query: 122 GTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK+S S Q +G SF IG Q NR T + + S Sbjct: 117 GTHGKTSTTSMAVVALQAAGEDPSFAIG--------GQLNRAGTNA---------HHGSG 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 V + S L ++R D I +I TN+ DH+DY + Y+ F + + Sbjct: 160 AVFVAEADESDGSLLRYRPD-IAVI----TNIEPDHLDYFGDAETYYKV-FDDFADRITD 213 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--------NKQQVT 292 I+ DD + E RA G V VGY G H A H + V Sbjct: 214 TGTLIVCLDDESAAECGVRALERGVTV--VGY-GTMTHPSIPNAAHVVDWRTENDLSVVK 270 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +++ G + + +PG+ V N++ A + G D + E L V RFE G Sbjct: 271 VNLNGTEMTYHLSIPGKHMVLNSVAALVAGVTAGADPFALAEGLSGFTGVRRRFELRGEL 330 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 S G R+Y DYAH ++ +LK + T R++V F Sbjct: 331 SDGTRVYDDYAHHPTEVDAVLKAAKG-TGARVVVCF 365 >gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia frederiksenii ATCC 33641] Length = 440 Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 157/363 (43%), Gaps = 32/363 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV+ D+R + AG +FVA+ G + DGH F A+A GA A++VS + Sbjct: 11 ITEVTIDTRQVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSK---------RLLVG 61 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR L FA+ + + P ++A+TG+SGK+SV V I ++ G + G Sbjct: 62 APQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAG- 120 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + A+ G + D + + Sbjct: 121 -----NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALV 168 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F LP AII AD + HN RV Sbjct: 169 NNLSAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSHDWPHWQETLHNK--RVWR 225 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIG 326 + Q T + F D PLPG + NAL AA L +++G Sbjct: 226 FSPHAAEDIDFYASDVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSVG 285 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 D A V + L +L VPGR + G++ +D ++ +N S+ + + + R+ Sbjct: 286 ADLAAVRQGLTQLQAVPGRLFPI--QLAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 343 Query: 385 IVV 387 +VV Sbjct: 344 MVV 346 >gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus COL] gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21189] Length = 452 Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM 13479] gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM 13479] Length = 463 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 64/347 (18%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAV 120 IA G A + + ++A + + P + L + L G K+ EN +AV Sbjct: 61 IAYGQRAENIVDGIDVVVYTAAVHPDNPEFAAAMEKGLPMLSRAELLGQMMKNYENAVAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSY 176 +GT GK++ S + +I L + PT ++ +S + R+ P +++ +A Y Sbjct: 121 SGTHGKTTTTSMITEI-----LLAADADPTISVGGILNSIGGNIRVGGPE-LFVTEACEY 174 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +S ++E N+ DH+D+ + RLF E Sbjct: 175 TNSFLSFFPTIEV-------------------ILNVEADHLDFFKDLDD-IRRSFRLFAE 214 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQ 290 LPK+ +I +D + K CRV++ G Y+ + I ++ + Sbjct: 215 KLPKDGILVINSD---ITDYEKITEGLPCRVITFGKEESSKYRAEQIRFDELA----RPV 267 Query: 291 VTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +SV+G+ D + +PGE VYN+L A +C+ +GI LE ++K G ++F Sbjct: 268 FDLSVDGETVDTVALGVPGEHNVYNSLAAIAVCMELGIS----LEMIKK-----GLWKFT 318 Query: 350 GTNSR--------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 GTN R G I DYAH + L ++ VVF Sbjct: 319 GTNRRFEKKGELGGITIIDDYAHHPQEISASLATALNYPHRKLWVVF 365 >gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. WCH70] Length = 463 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/348 (20%), Positives = 140/348 (40%), Gaps = 41/348 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G ++V + G K +GH F+ AI +GA A++ + T + P+ Sbjct: 35 VSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAIDKGASAVLWAET------EGTPPKDVPV 88 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145 ++VD+T + L A R + ++ +TG++GK++ + ++ + G + Sbjct: 89 IIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTTKDMIAALLATTYKVQKTEGNLNN 148 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG T+ +D + V + S+ G + + + Sbjct: 149 HIGVPLTLLRLEEDTEMAV--------------------VEMGMSNFGEIELLSNIAEPD 188 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A TN+G H+ +++ AK+ + L K++ +Y D ++ R + Sbjct: 189 AAVITNIGESHLQELGSREGIAQAKLEILSGL--KKNGLFVYHGD--EPLLVNRVPDLPL 244 Query: 266 --RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 VL G + K + + + F P+ G+ VYNAL A + Sbjct: 245 PEHVLRFGQGSDNDYYPKAVHVQANGTTFTVHQAPNRSFFLPILGKHHVYNALAAIAVAR 304 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + + E +L V R E + T + G ++ A+ +N M Sbjct: 305 FFHVSWEKIQEAFSQLQVTRMRMELIET--KKGWTIINDAYNANPTSM 350 >gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus 68-397] gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus subsp. aureus E1410] gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus M876] gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C101] gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C427] gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M899] gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus C160] gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M1015] gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus M809] gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS00] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 159/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGAGAAFYQKGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC + ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCCVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9] gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/381 (23%), Positives = 163/381 (42%), Gaps = 34/381 (8%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V +DSR I+AG +FVA+ G + D H F+ +A+GA VV + L Sbjct: 23 TRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLARGAAGAVVRCDFDL--------PGA 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P++ V + R L A+ + + +TG++GK++V ++ G+ + +G Sbjct: 75 PLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVKEMLR------GMLAQWLGDE 128 Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIA 206 + +++ +N + P L+ L + +V +H + L G+ + Sbjct: 129 AVLATGGNFNNDIGMP--------LTLLGLRDTHRAAVIEMGMNHAGELTYLSGLARPTV 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N R HI + + +A AK +F L + A+I DD + A AG R Sbjct: 181 ALVNNALRAHIGHFGSVEAIAQAKAEIFAG-LAADGVAVINRDDPNRDLFVAAA--AGRR 237 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 ++ G +H + + ++T+ + P+PG+ + NAL A + A+G Sbjct: 238 IVEFGLAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAACAVASAMG 297 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRI 384 + ++ L+ VPGR F + G +D + +N + + I + SGR Sbjct: 298 VPLPAMVAGLQAFAGVPGRLAF--RRAVSGLTVIDDTYNANP-DSVRAAIAVLAARSGRR 354 Query: 385 IVVFGCGGDRDQGKRPIMGKI 405 +VFG G+ +G + +I Sbjct: 355 WLVFGDLGELGEGAPALHAEI 375 >gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942] Length = 455 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 44/321 (13%) Query: 18 LSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 L P+Q E R +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V Sbjct: 14 LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73 Query: 75 SAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 Y D +A +L VDNT A + ++ +TG+ GK++ + Sbjct: 74 RDYQPPSDLAA-----GHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELI 128 Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 + GP T +++ +N + P + + ++ V + + Sbjct: 129 AAMLAVR-------GPVLKTEANY--NNEIGVPKTVLQIDPDHHWAA--VLEMGMRGRGQ 177 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + R+ + TN+G HI ++QA AK L + L AI+ AD+ Sbjct: 178 IAELARIAQPNIAV--ITNVGTAHIGLLGSEQAIAEAKCELLAQ-LSGTGLAILNADNHR 234 Query: 253 SKEVMKRAHNAGCRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +R + CR + QG+ I L+ T+ VEG+ F PLPG Sbjct: 235 LIATAQRLNLPRCRTYGLQNGDLQGQLIDLE-----------TLVVEGQRFR--LPLPGA 281 Query: 310 FQVYNALVAAGLCIA--IGID 328 N L AGL IA +G+D Sbjct: 282 HNALNFL--AGLAIAQELGLD 300 >gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens SM101] Length = 453 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ +A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NTR+ L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDFGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 NA +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPNAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus RF122] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLNTLTGRRILIL 360 >gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium ferrooxidans DSM 13031] Length = 471 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 43/370 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FVA+ G + DGH ++ QGA ++VS + ++ S +V Sbjct: 34 DSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGFIVT 93 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ L AS ++A+ G++GK++ V + G T +S Sbjct: 94 DDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASV--------LATGFTVQMSQ 145 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGR 214 ++N L P + L G+ V V +H + L I + G TN+G Sbjct: 146 GNRNNHLGVPLTL-----LQLRPDTGIAVVEV-GINHPGEMEELTAIARPTHGLLTNIGH 199 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE---------VMKRAHNAG- 264 +H+++ A+ +LF L A + DD+ + + A G Sbjct: 200 EHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDDSRLRAAGEALEGPVIYGTADLPGR 259 Query: 265 -CRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 CR +SV G+ + +C+ + VT++ GK V NA+ AA + Sbjct: 260 ICRARDISVCRDGRISFV--LCSADRTEPVTLNFTGK-----------HNVINAVAAAAV 306 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI- 379 + G+ + + E LE L PG +S G RI D Y S+S+ + + + + Sbjct: 307 GLHFGLPLSRIREGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMRLAIDALCDLP 366 Query: 380 TSGRIIVVFG 389 G+ I V G Sbjct: 367 CEGKRIAVLG 376 >gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis N1568] Length = 445 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria meningitidis ATCC 13091] gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria meningitidis ATCC 13091] Length = 445 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O46] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNGTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 454 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 47/376 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + KI+ VS DSR+I +FV G DGH F+ QA+ GA A A+ D Sbjct: 20 QYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGAGA-----AFYQNDAK 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 PI+ VD+T L A + Y KH ++AVTG++GK++ ++ + + Sbjct: 75 PDHEIEGPIIWVDDTLLALQELA-KAYLKHVNPKVIAVTGSNGKTTTKDMIESVLK---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 +F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 PAFKVKKTQG----NYNNEIGMP--------LTILQLDEDTEISILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + IA TN+G H+ +++ AK + L P IY D E + Sbjct: 176 LSEIAHPDIAVITNIGESHMQDLGSREGIARAKFEIVSGLKP--GGVFIYDGD----EPL 229 Query: 258 KRAHNAGCR---VLSVGY-QGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQ 311 + H + +S+G Q + VC++ H+ + ++ + + P+ G Sbjct: 230 LKPHVDTLKDTEAISIGLAQDNSV----VCSVEQHDAMGIAFTLNTNEH-YQIPILGTHN 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + NA +A + +G+ + E++ K+ + R E T+S I Y + S++ Sbjct: 285 MRNAAIAISIGKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKA 344 Query: 372 ILKNIRTITSGRIIVV 387 + + + +I+++ Sbjct: 345 AIDTLAAMDGRKILIL 360 >gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus licheniformis ATCC 14580] gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. BT1B_CT2] Length = 456 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 43/372 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I VS+DSR + G +F+ + G + +GH+F QA +G A++ + + Sbjct: 25 RLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRS------EPNPP 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRS 140 P+++VD+T + L A + ++ VTG++GK++ + ++ + Sbjct: 79 EGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTE 138 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRL 199 G + IG TI + +D + AK + +L+ ++V Sbjct: 139 GNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAV------------ 186 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 TN+G H+ +++ AK+ + L KE I D+ E R Sbjct: 187 ---------ITNIGESHLLELGSREGIAEAKLEIVNG-LSKEGTLIYVGDEPLLTE---R 233 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + G F L+ + ++ V G + F P+ G+ V NAL A Sbjct: 234 LNQPPYDTKTFGEDPAFDYQLEDMT--QTEEGTAFRVRGIENGFFIPVLGKHNVKNALAA 291 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + A + E L KL V R E V T I Y + S++ ++ + Sbjct: 292 IAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQ 351 Query: 379 ITS-GRIIVVFG 389 + G+ I+V G Sbjct: 352 MKGYGKKILVLG 363 >gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Weissella cibaria KACC 11862] Length = 454 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 91/399 (22%), Positives = 167/399 (41%), Gaps = 51/399 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 + LQ++ E+IN + + + DSR +AG +FV +V DGH ++ Sbjct: 3 LTLQEMATAINAEIINAADV--------AVTSTTFDSRKAEAGSLFVPLVA-ANDGHDYV 53 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A GA + + + + ++ P LVV +T A + ++A+ Sbjct: 54 ASAVANGATVTLWQADHP------NVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAI 107 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +G++GK++ FV I G S+F+ T ++F +N + P+ I LS Sbjct: 108 SGSNGKTTTKDFVAAI----GASTFKT--VKTPANF--NNEIGVPTTI--------LSMP 151 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRL 233 T + V G+D R + ++ T +G HI++ +T++ + KM + Sbjct: 152 ADTELLV--IEFGMD--RPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERIADGKMEI 207 Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L P ++Y D+ +E + +A + G A+ N T Sbjct: 208 IAGLQPNG--VLVYNGDEPLLRE--RAGQHAFLHTATFGLNPDNDLYASTIAM-NPVGAT 262 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + PL G + V NAL A + I +GI + + L + + R E++ N Sbjct: 263 FQTDKSAMTYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALAEAPITENRTEWLAGN 322 Query: 353 SRGGRIYVDY--AHTSNSLEMILKNIRTITSGRIIVVFG 389 GG+I D ++ + + E++ T +GR I V G Sbjct: 323 -FGGKILSDVYNSNPTAAKEVLHFFAETPVTGRRIAVLG 360 >gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580] gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580] Length = 491 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 43/372 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I VS+DSR + G +F+ + G + +GH+F QA +G A++ + + Sbjct: 60 RLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEGVAAVLWNRS------EPNPP 113 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRS 140 P+++VD+T + L A + ++ VTG++GK++ + ++ + Sbjct: 114 EGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKDMIHAVLGTEYKVHKTE 173 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRL 199 G + IG TI + +D + AK + +L+ ++V Sbjct: 174 GNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARPDIAV------------ 221 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 TN+G H+ +++ AK+ + L KE I D+ E R Sbjct: 222 ---------ITNIGESHLLELGSREGIAEAKLEIVNG-LSKEGTLIYVGDEPLLTE---R 268 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + + G F L+ + ++ V G + F P+ G+ V NAL A Sbjct: 269 LNQPPYDTKTFGEDPAFDYQLEDMT--QTEEGTAFRVRGIENGFFIPVLGKHNVKNALAA 326 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + A + E L KL V R E V T I Y + S++ ++ + Sbjct: 327 IAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQ 386 Query: 379 ITS-GRIIVVFG 389 + G+ I+V G Sbjct: 387 MKGYGKKILVLG 398 >gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9635] Length = 452 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A S+ + Sbjct: 20 QFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQKGTSIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDDDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 + NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VNEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; D-glutamic acid adding enzyme) [Neisseria meningitidis 8013] Length = 445 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -KKNGVVFIDDSKGTN 330 >gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH130] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + + TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLTQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+K+ + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKKVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLGTLTGRRILIL 360 >gi|297621605|ref|YP_003709742.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU 86-1044] gi|297376906|gb|ADI38736.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU 86-1044] Length = 447 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 101/377 (26%), Positives = 157/377 (41%), Gaps = 61/377 (16%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 +++LAV GT GK++ +S + + + G S SF IG +++F + + S ++A+A Sbjct: 102 KDVLAVGGTHGKTTSSSLLAWVLEVCGFSPSFAIG--GIVANFKANGKAGEGS-CFVAEA 158 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + S L ++R G + TN+G DH+D+HQT++ N R Sbjct: 159 --------------DESDGTLARYRSFGAIV-----TNIGLDHMDHHQTEERLLNC-FRT 198 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-- 291 F + E+ DD KR + +S G+ H + + +QV Sbjct: 199 FFSKVQNEAFCFWCGDD-------KRLQTLNPKGVSYGF-----HENNRLRVDHFRQVGW 246 Query: 292 ----TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + +GK F D L GE NA GL + +G + + E L+ V R Sbjct: 247 TSIFDVVFDGKRFADIEVLLAGEHHALNAAAVFGLSLRLGAQESKIREALKTFKGVARRC 306 Query: 347 EFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGK 404 E G + G +++ DYAH + LK IR + RI+ VF R R MG Sbjct: 307 EVKG--EKNGILFLDDYAHHPTEIRATLKAIRQASPDRRIVAVF--QPHRYTRTRDCMGM 362 Query: 405 IALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-------- 454 AD IVTD + E P E+ H I +EK + ++ E Sbjct: 363 YGSTFHSADQVIVTDIHAAGESPIP-GVEVCH-ILSELEKNSSVKCRYLPREDLSCKLSK 420 Query: 455 MLNKQDVLVVAGKGHET 471 L K DV+V G G+ T Sbjct: 421 FLEKGDVVVTLGAGNIT 437 >gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 460 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 45/383 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++D+R I +F+A++G D H+F+ +AI++GA A+++ Q + + Sbjct: 30 IHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEK----QCYPKNV--- 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V NT L AS + + ++A+TG+SGK+SV I + G Sbjct: 83 IPQIIVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCG-------- 134 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +TIS+F +N + P + L+ S + + A+ ++ K Sbjct: 135 -NTISTFQNLNNNIGVPLTL-----LNLNKSHKYAILELGANYPKDIEYTTKITKPNIAL 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H+ ++ AK +F L K AI D Y + K Sbjct: 189 INNIYHSHLAGFKSLFGVAQAKQEIFLG-LRKNGIAIYNKDSNYWSKWKKNLLTQKIINF 247 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVAA 319 S+ KK I +T S +G F PL G + NAL AA Sbjct: 248 SI---------KKNSTIF-ASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAA 297 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + I+I I ++ L L ++ R + + N I Y + S+ + +K + I Sbjct: 298 TIAISINIPLEIIKIGLSSLPILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENI 357 Query: 380 TSGRIIVVFGCGGDRDQGKRPIM 402 + ++ F G + GK ++ Sbjct: 358 SGYKL---FVAGDMLELGKNDVL 377 >gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 329 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 125/295 (42%), Gaps = 23/295 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R +QAG +FVA+ G K DG F A+ GA A+++ S R+ + Sbjct: 31 ITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTPGAV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T A K ++AVTG++GK++ G T Sbjct: 91 IGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVC------RT 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKL--IAGSF 209 +++ +N + P L+ L G T VE G Q G Sbjct: 145 AANY--NNEIGLP--------LTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H++ + + AK L E + P I+ ADDA + +A + G R+L+ Sbjct: 195 TNVGETHMELLGSIENIARAKSELVEAIAPG-GIVILNADDARVAAMRAQAAD-GVRILT 252 Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLC 322 G + K I + + + N+ + ++ G+ D+ PL G VYN A GLC Sbjct: 253 YGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRGACGGLC 307 >gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma marginale str. St. Maries] Length = 463 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/367 (21%), Positives = 158/367 (43%), Gaps = 40/367 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S Sbjct: 23 LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T + L A+ ++A+TG++GK++ + + G + Sbjct: 77 GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + A N L P+Y A ++ V +E + + +D + IA Sbjct: 133 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 179 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H+++ ++ + AK+ +F + + A++ D Y ++ A + Sbjct: 180 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R++S G + + I +++ VT G++ + Y+ + A + Sbjct: 239 RIISFG-----VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAV 293 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRT 378 A ID +E+ + GR + T +G I +D A+ +N L M+ ++N+ Sbjct: 294 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 353 Query: 379 ITSGRII 385 + R++ Sbjct: 354 LNHARVL 360 >gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/371 (22%), Positives = 147/371 (39%), Gaps = 39/371 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++EVS+DSR I +F+A+ G + D H F P + GA A++V + + Sbjct: 30 LSEVSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVERELDV---------D 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V NTR + A+ + + ++ +TG+SGK+SV I + G + + G Sbjct: 81 CPQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGN 140 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +N + P ++ L Y + G H + A + + +K + Sbjct: 141 L--------NNDIGVPLTLFRLTHEYDYAVIEMGANHPNEIAYTTNI-------VKPESA 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 NL H+ + + AK +++ LP E AI+ D + Sbjct: 186 LVNNLFAAHLAGFGSPEGVARAKGEIYQG-LPDEGTAIVNLDSYSPHWQFQPRQTVWYYS 244 Query: 268 LSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 L + F I +K++ T+ PLPG + N L A+ L I Sbjct: 245 LKPQDKADFYPSDIEVKQL-----STNFTLHTPVGQIAITLPLPGMHNIANVLAASALAI 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSG 382 ++G + L VPGR V + ++ +D + +N MI N+ G Sbjct: 300 SVGATLEDIRNGLATTKAVPGRLYPVQLSPT--KVVLDDTYNANDGSMIAAINVLAKMPG 357 Query: 383 RIIVVFGCGGD 393 I++ G G+ Sbjct: 358 YRILIAGDMGE 368 >gi|168213683|ref|ZP_02639308.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969] gi|170714862|gb|EDT27044.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969] Length = 874 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 I--HLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQ--VYNALVAAGLCIA 324 + +LK I + TI V+ + ++ F + G+ + + NA+ A + Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM 43827] gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827] Length = 466 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 101/226 (44%), Gaps = 16/226 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+H T +AY + +F+E L + P I ADD S + RA G R Sbjct: 183 TNVEADHLDHHGTVEAY----VAVFDEFLERIEPGGVLIACADDEGSAALADRAEKRGIR 238 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V G + V H + ++G+ D +PGE NA+ A Sbjct: 239 VRRYG-RAATGEGAAVLVEHRPDGAGGLAVVELDGERLDVRVAVPGEHMAGNAVAALLAA 297 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 + +G D VLE L V RFEF G + G R+Y DYAH + LK R + Sbjct: 298 VELGADRWGVLEGLAAFGGVRRRFEFKGVAA-GVRVYDDYAHHPTEVAAQLKAARPVAGD 356 Query: 382 GRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 GR++VVF R + GK AL LAD +V D EDPE Sbjct: 357 GRLVVVFQPHLYSRTKTFAAEFGK-ALALADEVVVLDVYGAREDPE 401 >gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH9] gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MR1] gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus N315] gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu50] gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus JH9] gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JH1] gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus Mu3] gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9781] gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9763] gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9299] gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A8115] gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6300] gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A6224] gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A5937] gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus ED98] gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A10102] gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A8117] gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Staphylococcus aureus 04-02981] gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819] gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796] gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus CGS03] gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21172] gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus 21193] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLGTLTGRRILIL 360 >gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus O11] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ +++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWIEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|110801078|ref|YP_696891.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124] gi|110675725|gb|ABG84712.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124] Length = 874 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 35/405 (8%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 RK L Y P +++VTGT+GK++ + + L F +G T+T Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLN---LIGFNVGCTTTSGVKIG 518 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-- 216 + + A S L + V +E++ GL + L G TN+ DH Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 ID + K L E + ++I ADD +S +V+ R + S+ K+ Sbjct: 579 IDGINDMEDLSFVK-SLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKI-LFSMNENNKY 636 Query: 277 I--HLKKVCAIHNKQQVTISVEGKDFDFL--------FPLPGEFQ--VYNALVAAGLCIA 324 + +LK I + TI V+ + ++ F + G+ + + NA+ A + Sbjct: 637 LQENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVG 696 Query: 325 IGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D ++ + L++ GRF N G + +DY H + ++++ +++ + Sbjct: 697 IEVDYCIISKGLKQFKSCEEDNRGRFNMFDVN--GINVILDYGHNIDGYKVVIDSLKNLG 754 Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 I + G GDRD +G+I+ D D I I D + R +D ++ + I G+ Sbjct: 755 LKNITGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSS 814 Query: 440 IEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 K + EA+R +++ K + +++ + +E+++ + N Sbjct: 815 NRKDLNVKIILSEEEALRETLKLAKKGETIIMFFEDYESLYDIIN 859 >gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH1134] gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-2] gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus F65185] Length = 458 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 39/339 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLD 200 F++ T +F +N + P L+ L+ + T V+V SS G + Sbjct: 131 KFKVQKTE--GNF--NNHIGLP--------LTILNLEETTEVAVLEMGMSSRGEIEFLSK 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + A TN+G H+ +++A AK+ + L +E +Y D Sbjct: 179 LARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPE 236 Query: 261 HNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 N ++ G Y + L + H K ++ F P+ G+ VYN Sbjct: 237 MNLATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 L + + G+ + E L L + R E V TNS Sbjct: 291 TLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus JKD6159] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + P++ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNTL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] Length = 477 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/337 (24%), Positives = 142/337 (42%), Gaps = 20/337 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ ++ P+ I +S DSR IQ G F AI G++ DGH + A+A GA +V Sbjct: 9 DLVAAMTGRPVGTMPPGITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIAVANGAALMV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ A A R P++VVD+ + L A + I+AVTG+ GK++ Sbjct: 69 VNEA----KLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++Q+ SG + ++SF +N P+ LA+ + + GV + + S Sbjct: 125 LRQVLAPSGEVH------AAVASF--NNHWGV--PLTLAR-MPATAQYGVFEIGMNHS-- 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ T + H+ + +AK +F + ++ D+ Y Sbjct: 172 GEITPLVQMVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVA-ANGGVLLNHDNPY 230 Query: 253 SKEVMKRAHNAG-CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + +A AG + S G K L + ++G+ + + PG Sbjct: 231 FEYLEHKAQEAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRH 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 NA+ A G +G D ++ L +L V GR E Sbjct: 291 IAENAMAALGAARLLGADLDGAVDALSRLSPVKGRGE 327 >gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7822] Length = 454 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 48/334 (14%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 + PE N L+IF E+ + +++DSR I G IFVA+ G DG+ F A+ +GA Sbjct: 15 ELPE-TNLLAIF----SEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAVEKGAI 69 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 AI+V ++ N P +V +T A + ++AVTG+ GK++ Sbjct: 70 AIIVD-----REVPVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTTT 124 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSY------LSSQGV 182 + + + G T +++ +N + P + L K+ Y + ++G Sbjct: 125 KELIAAVLSQRGKVH------KTRANY--NNEIGVPKTLLELDKSHDYAVIEMAMRAKGE 176 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + E + L G TN+G HI + +A AK L E++ P ++ Sbjct: 177 IALLTEIARPTL------------GIITNVGTAHIGRLGSTEAIAAAKCELLEQMSP-DT 223 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 AI+ D+ E + L+ G +G + V + + Q T+ VEG +F Sbjct: 224 IAILNHDNPLLIETAHKVWQG--ETLTYGLEGGDL----VGQLIDAQ--TLRVEG--INF 273 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 P+PG N L A + + +D + E L Sbjct: 274 PLPIPGRHNALNYLAALAVAKVLNLDWTPLTEGL 307 >gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ED133] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio orientalis CIP 102891] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R IN VS+D+R+I+ G +FVA+VG + D H F QA+ GA A++VS S Sbjct: 20 NDRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQAVDSGAGALLVSKPVS------- 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P LVV +T+ L + ++ +A+TG+ GK++V + I ++ G F Sbjct: 73 --GDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCGKTTVKEMIASIMEQKGQVLF 130 Query: 146 QIG 148 G Sbjct: 131 TAG 133 >gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus D139] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + P++ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Florida] Length = 476 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/367 (21%), Positives = 158/367 (43%), Gaps = 40/367 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S Sbjct: 36 LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 89 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T + L A+ ++A+TG++GK++ + + G + Sbjct: 90 GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 145 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + A N L P+Y A ++ V +E + + +D + IA Sbjct: 146 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 192 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H+++ ++ + AK+ +F + + A++ D Y ++ A + Sbjct: 193 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 251 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R++S G + + I +++ VT G++ + Y+ + A + Sbjct: 252 RIISFG-----VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAV 306 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMI--LKNIRT 378 A ID +E+ + GR + T +G I +D A+ +N L M+ ++N+ Sbjct: 307 GHAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSN 366 Query: 379 ITSGRII 385 + R++ Sbjct: 367 LNHARVL 373 >gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST24] Length = 468 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 31 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 84 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 85 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 140 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 141 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 249 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 250 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 303 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 304 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 339 >gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 459 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 167/373 (44%), Gaps = 37/373 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW E +++ V+ DSR ++ G +FV + G + DGH F+ A GA A + ++ S +D Sbjct: 20 QWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQNGASATLWAADRSYED-- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P +VVD+ L K ++AV+G++GK++ + I Sbjct: 77 ----DGYPRIVVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTKDMIASIL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 S Q+ T T ++F +N + P + L+ S+ V + S G LD + Sbjct: 127 STQMNVTKTYANF--NNAIGVPVTL-----LNMESNTEAVVVEMGMSHFG----ELDELS 175 Query: 203 KLIA---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 KL+ T +G HI++ ++ +AKM + L +E +Y D + +R Sbjct: 176 KLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGL--REDGTFVYNGD--EPLLRER 231 Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + + G Q I+ V + + +++ D +F P+ GE+ V NA+ A Sbjct: 232 AKDLKQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNL-WPDEEFTIPMIGEYNVNNAMAA 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 + + + + + L + + R E++ T +G +I D Y +++ +L+ + Sbjct: 291 MMVGHLLHVTPSHLKIGLANVELTENRAEWL-TGQQGEKILSDVYNSNPTAVKEVLETLN 349 Query: 378 TI-TSGRIIVVFG 389 + +GR ++V G Sbjct: 350 ELPETGRRLIVLG 362 >gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL S4-171] Length = 309 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 136/325 (41%), Gaps = 54/325 (16%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 SI +R+ I V D+R I+ G +FV VGN DGH F+ QA GA A Sbjct: 17 SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 70 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 Q ++ P+++V++T L A + + ++A+TG++GK++ + I + Sbjct: 71 WQKNVPNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVE 130 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + IG TI + +D + + G+ H Sbjct: 131 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 170 Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 +H ++ + IA TN+G HI+Y ++Q AK+ + L P S +IY Sbjct: 171 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 224 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303 Y + ++ + R L+ G + + L+ IH + + T V D + Sbjct: 225 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGID 328 P+ GE V+N + A IGI+ Sbjct: 278 VPIIGEHNVFNTMAAMLAAREIGIE 302 >gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus A5948] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTVLELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio fischeri MJ11] Length = 449 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ VS+DSRHI +FVA++G + D H FIP QGA A++VS + + Sbjct: 20 QISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGATALLVSK---------EVDT 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V +T+K L L A ++ A+TG+ GK++V + I RSG Sbjct: 71 TLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSG 123 >gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612] gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612] Length = 471 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 77/331 (23%), Positives = 124/331 (37%), Gaps = 53/331 (16%) Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +VV SA +D +R+ L + +L L + + + V GT GK++ + Sbjct: 76 MVVYSAAIHEDNPDMVRAKDLDLPIVERSDYLGLLSLAF-----DKTIGVAGTHGKTTTS 130 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + + + P+ +I + N S ++ ++ Y+ S Sbjct: 131 SMIAALLHYADFD-----PSVSIGGKLPEIGGNACLGDSDYFVIESCEYVDS-------F 178 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 +SH + G TN+ DH+DY F +LP + I Y Sbjct: 179 LKTSHYI------------GIITNIEEDHLDYFTEGLPQIKESFHKFGAILPPDGLMIAY 226 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301 D S++V+ N C V + G++ K HN Q + FD Sbjct: 227 GD---SQDVLDTVENLRCPVTTYGFEKK-----NDWTAHNIQYDDMG--NPSFDAYHHNE 276 Query: 302 ----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 F +PGE V NAL +GID A V + L+ H RFEF G G Sbjct: 277 FYGHFNMKIPGEHNVLNALSCIACSEFLGIDEATVQKTLDNFHGAKRRFEFRG-EVNGIN 335 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +Y DYAH L++++ + V+F Sbjct: 336 VYEDYAHHPTELKVVIDACLNHAHNNLWVIF 366 >gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis 89/1591] gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptococcus suis ST3] Length = 453 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/389 (22%), Positives = 157/389 (40%), Gaps = 65/389 (16%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +S++P +R N+V DSR I G +FV + G + DGH FIP A G +V S Sbjct: 16 NDISLYP----DRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLS 68 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 SL + P ++V++ L A+ K ++AVTG++GK++ + Sbjct: 69 EVSL---------DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHD 119 Query: 136 IC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G + +IG T+ D + G H+ Sbjct: 120 VLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 164 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKES---PA 244 D H L I + S L G H+++ +++ K+++ + + P PA Sbjct: 165 ------DIHLLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPA 218 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 AD V ++ G Q L+ + +K +T +V D D Sbjct: 219 YPIADKLLPSHV---------DLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFL 266 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363 P+ G++ NA+VA+ + +G+ + + L L++ R E+ + G I D Y Sbjct: 267 PVTGKYNATNAMVASYVGKTLGVSNEAIKSALASLNLTRNRTEW-KKAANGADILSDVYN 325 Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFG 389 ++ +IL+ +I + G+ I V Sbjct: 326 ANPTAMRLILETFSSIPANEGGKKIAVLA 354 >gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria seeligeri FSL N1-067] Length = 316 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 54/336 (16%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 SI +R+ I V D+R I+ G +FV VGN DGH F+ QA GA A Sbjct: 17 SIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMGAVATF------ 70 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 Q ++ P+++V++T L A + + ++A+TG++GK++ + I + Sbjct: 71 WQKNVPNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGKTTTKDIMAAIVE 130 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + IG TI + +D + + G+ H Sbjct: 131 TSYKVHYTGGNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH------- 170 Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 +H ++ + IA TN+G HI+Y ++Q AK+ + L P S +IY Sbjct: 171 ----RHEIEVLSKIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAGLNP--SGILIY 224 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFL 303 Y + ++ + R L+ G + + L+ IH + + T V D + Sbjct: 225 ---PYEETLLLSQIDGDFRQLTFGKSTESEIYPLE----IHAEAEGTSFVTNWEPDLEIF 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 P+ GE V+N + A IGI+ + L+ + Sbjct: 278 VPIIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNM 313 >gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Stenotrophomonas maltophilia R551-3] Length = 464 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 39/349 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R++ G ++VA+ G + DGH F A A+GA A++V ++ Sbjct: 24 IDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARGASALLVERLLPIE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V ++ L+ A+ + + A+TG++GK+SV S + I Q+ + ++ Sbjct: 75 LPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVKSLLLSILQQVARHAHKV-- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + ++N + P + A + A G + D + Sbjct: 133 -VYANPGNRNNEIGLPLAVIDAP-----EDADYAVYEMGAGKPGDIAYLTDIARPRYALV 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRV 267 N+ H++ + K ++ LP + A+I DDAY + + A CRV Sbjct: 187 NNIAPAHLERMGSLLGVAVTKGAIYAA-LPADGVAVINVDDAYGRWFEQHFVGTPARCRV 245 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 L G + H V A + + +G F + P LPG V NAL A Sbjct: 246 LRYGLE----HTADVTA----RDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNALAA 297 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A L +A GI+ ALV L VPGR + G + VD ++ +N Sbjct: 298 ASLALAAGIELALVAAGLADAQPVPGR--QIAHQLHNGAVLVDDSYNAN 344 >gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya sp. PCC 8106] Length = 467 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 40/291 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R +Q G F+A+ G + DGH F+ QAIAQGA +V + DF+A N P+ Sbjct: 33 ITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQGAVCAIVDA-----DFTAD-NPNLPL 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V ++ A + I+ VTG+ GK++ + + G T Sbjct: 87 LTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGKTTTKELIAAVLGTQG------NVHKT 140 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSH--GLDQHRLDGIKLIAG 207 +++ +N + P K L L+S V +++ A L Q I LI Sbjct: 141 QANY--NNEIGVP------KTLLQLNSHHNYAVIEMAMRARGEIALLTQIARPTIGLI-- 190 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI ++QA AK L E +P+ S A++ D + + + A Sbjct: 191 --TNVGTAHIGRLGSEQAIAEAKCELLAE-MPQNSVAVLNCD--HHRLMDTAATVWSGET 245 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 L+ G +G + + + A H T+ VEG D PLPG N L A Sbjct: 246 LTYGLEGGDLQGELIDA-H-----TLRVEG--LDLPLPLPGYHNASNFLAA 288 >gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus 132] gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus 930918-3] gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus D30] gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus TW20] gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus A9765] gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754] gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus CGS01] gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus T0131] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 453 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/404 (21%), Positives = 174/404 (43%), Gaps = 36/404 (8%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQD 81 ++ E ++S+D+R I +F+A+ GN +G+ ++ +AI GA AI+ + L++ Sbjct: 18 IKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAGATVAIIDEVNFKLEE 77 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + ++ V++++ L A K ++ +TG++GK+S V Sbjct: 78 LNGK----GTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTKDLV-------- 125 Query: 142 LSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRL 199 ++F G S + +N + P I+ L S V +E ++ ++ HRL Sbjct: 126 -AAFLSGKYSVFKTKGNFNNEIGLPLMIF------ELDSSYDIAV-LEMGTNNFNEIHRL 177 Query: 200 DGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + TN+G HI+Y +T++ K + + + + Y +D + K Sbjct: 178 ANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYENDM----LQK 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316 + ++ +GY K+ ++ + + ++ G+ F + GE + NAL Sbjct: 234 VNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNAL 293 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 + + GI + L R EF+ N+ I D Y + +S++ L Sbjct: 294 LGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNF--TIINDCYNASPDSMKSALSV 351 Query: 376 IRTITSGRIIVVFG-CG--GDRDQGKRPIMGKIALDLADIAIVT 416 ++T + R I V G G G+ + ++G+ A+ ADI + T Sbjct: 352 LKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTT 395 >gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus B4264] gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1550] gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-Cer4] gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-15] gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH676] gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis BMB171] Length = 458 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Succinatimonas hippei YIT 12066] Length = 461 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 35/368 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V++DSR+ G +F+A+ G K D H F+ +A+ GA A+ VS +FS Sbjct: 23 EVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKAVLSGAAALGVSLG---GNFS----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + +T + L L + K P I AVTG+ GK++V I ++ G Sbjct: 75 -VPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKTTVKEMAYSILKQ--------G 125 Query: 149 PTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIA 206 + ++ +N + P + + L + L Y + + +SH D R + ++ A Sbjct: 126 FNAMCTNGNFNNDVGVPLTLLRLDEKLDYA-------IIEQGASHKEDIKRTSEFVQADA 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--G 264 TN+G+ HI+ + + K + + +L + I+ + + E K A Sbjct: 179 AVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDYKEAFLQ 238 Query: 265 CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++L+ GY F+ + +V + + ++ +G+ L G+ NA AA LC+ Sbjct: 239 GKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAAAAALCL 298 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 A+G D + LE V GR + + G +D A+ + S +L I T++S Sbjct: 299 ALGCDFKYIKPGLENTSSVKGRLQ---VKNFAGFTLIDDAYNA-SFNAVLSGIDTLSSFA 354 Query: 382 GRIIVVFG 389 G ++VFG Sbjct: 355 GFKVMVFG 362 >gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103] gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V++D+R + AG +FVAIVG + D H F AIA+GA+A++VS + + Sbjct: 24 LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVSKHLPV---------S 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P +VV +TR A+ + + ++A+TG+SGK+SV I ++ G Sbjct: 75 VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCG 126 >gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio fischeri ES114] Length = 452 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ VS+DSRHI +FVA++G + D H FIP QGA A++VS + + Sbjct: 23 QISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAVQEQGATALLVSK---------EVDT 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V +T+K L L A ++ A+TG+ GK++V + I RSG Sbjct: 74 TLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKTTVKEMLASILTRSG 126 >gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobotulus glycolicus DSM 8271] Length = 471 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/325 (24%), Positives = 145/325 (44%), Gaps = 30/325 (9%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 ++DSR ++ G +F+A+ G K DGH +I +A+ GA ++ ++ + + I+ Sbjct: 27 TADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAAIVLAEEKRLRREGVPVLPEKSSII 86 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 V+++ K L A+ + ++ VTG++GK++ V + + F++ Sbjct: 87 AVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTTKDMVAAVLG----TKFRV------ 136 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR-LDGIKL-IAGSFT 210 N + I L ++ L + T V V E GL Q + L I A T Sbjct: 137 ----HKNAGNLNTEIGL--PMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEISCPCAAVIT 190 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H++ +++ AK + E LP+E AI+ +D S M++A + + L Sbjct: 191 NIGATHLELLGSRENIARAKWEIVES-LPEEGIAILNTEDKIS---MEKAASYHGKTLFY 246 Query: 271 GYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIA 324 G +GKF + +++ T K + L PLPG+ V +AL A G + Sbjct: 247 GIEGKFGRPDLWAEEIIP-SGDTGTTFRARYKKENVLIRLPLPGKHNVLDALAALGAGLL 305 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV 349 G++ + LE L + R E + Sbjct: 306 NGVNLESGSQALEGLQISAMRLEIL 330 >gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium papyrosolvens DSM 2782] Length = 459 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 154/373 (41%), Gaps = 36/373 (9%) Query: 25 WRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQD 81 W E + V++DSR + +F+ ++G K DGH +I Q GA + S + Sbjct: 19 WGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVCLTSKPIPEVAG 78 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 SA ++VD+T K L A+ K ++ +TG+ GK+S V + + Sbjct: 79 CSA--------VLVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSCVLSQ-- 128 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + T +F +N + P + L+ SS + + S G + RL Sbjct: 129 ----KYSVLKTQGNF--NNEIGLPLTV-----LNIDSSHETAVIEMGMSGFG-EISRLTA 176 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 I + TN+G HI+ +Q+ AK+ + E L K ++ DD K + + Sbjct: 177 IARPDIAIITNIGVSHIEKLGSQEGILKAKLEILEGL-HKNGLVVLNGDDPLLKPLKGKL 235 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318 R + G G + +Q + I+V ++ P+PG VYNAL A Sbjct: 236 P---FRTVLYGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAA 292 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 I + I +++ +++ PG N G +I D Y + S++ + + Sbjct: 293 IAAGIEMKIPMEIIINGIKQFS--PGNMRQSIINHNGIKIINDAYNASPQSMQAAINVLE 350 Query: 378 TITSG-RIIVVFG 389 I+SG R I V G Sbjct: 351 EISSGSRSIAVLG 363 >gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis 961-5945] gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis G2136] Length = 445 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -KKNGVVFIDDSKGTN 330 >gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17] Length = 459 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 30/319 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V++D+R + G +FVA+ G DGH F+ +A QGA A VV + D Sbjct: 29 NAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDCIDAAVDL-------- 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L+V +T L A+R ++A+TG+SGK++V I Q Q+GP Sbjct: 81 PQLLVSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQ-------QMGP- 132 Query: 151 STISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207 + I+ +N + P ++ LA + ++E + GL++ + + +K Sbjct: 133 ALITQGNLNNHIGVPLTLFGLAPEHRF--------GAIELGASGLNEIAYTVAMVKPQVA 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G+ H++ + Q AK + + + + ++ DD + + RA RV Sbjct: 185 ILTNAGQAHLEGFGSYQNIVLAKGEIIDG-VADDGLVVLNRDDPAFDQWLVRAGRR--RV 241 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 SV G KV A Q +G D L GE + NA +AA +G Sbjct: 242 ASVSRAGHAGADYKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELGA 301 Query: 328 DSALVLEHLEKLHVVPGRF 346 + + LE++ V GR Sbjct: 302 TNEHIKAGLEQVLAVKGRL 320 >gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oscillatoria sp. PCC 6506] Length = 453 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 47/324 (14%) Query: 13 ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71 +L L++ P +R I +++D+R+++ G +FVA+ G DGH F+ +A+ GA A Sbjct: 9 QLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIAA 68 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 VV ++ + + P+L V++T K A + ++AVTG+ GK++ Sbjct: 69 VVDRSWESEGL------DLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKE 122 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + G + +N + P + LS V + + AS Sbjct: 123 LIAAVLTTKG--------NVLKTQLNYNNEIGVPKTLL---ELSESHHYAVIEMGMRASG 171 Query: 192 H--GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 L Q I +I TN+G HI +++A AK L E +P +S AI+ +D Sbjct: 172 EIAFLTQIARPTIAVI----TNVGTAHIGRLGSREAIAQAKCELLAE-MPNDSIAILNSD 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKK--VCA--IHNKQQVTISVEGKDFDFL 303 +A +M A +QG+ + L+K +C I ++ TIS++ + Sbjct: 227 NAL---LMATAAKV--------WQGETLAYGLEKGNLCPELIDDR---TISID--SINLP 270 Query: 304 FPLPGEFQVYNALVAAGLCIAIGI 327 PLPG N L A + +G+ Sbjct: 271 LPLPGRHNAVNYLAALAVAKVLGV 294 >gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mitsuokella multacida DSM 20544] Length = 459 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 161/379 (42%), Gaps = 35/379 (9%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 ++ M+ E ++ +D+R I G +F+A G + +G F+ A+ +GA ++VS++ Sbjct: 17 LYKMEHEE--FTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVEKGASGVMVSTSCPK 74 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + T +L+ ++T A + ++A+TG++GK++ + Sbjct: 75 AQLAGL---KTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTTTKDLTAAVLSA 131 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + + A N + I L L L + V VE GL H++ Sbjct: 132 RG---------PVLKTQANYN-----NEIGLPLTLLGLRKEHTAAV-VEIGMRGL--HQI 174 Query: 200 DGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + + IA G TN+G H++ + + AK + E +P ++ AD+ Y Sbjct: 175 EAMAPIAAPTVGIVTNVGETHMELLGSIENIAKAKSEMV-EAIPAGGTVVLNADNPYVA- 232 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQ 311 M+ G RVL+ G + + K I ++ + I +G++ F F + G Sbjct: 233 AMRSQAREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHN 292 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 VYNAL A A+G+ A L L RFE + + + D Y + S++ Sbjct: 293 VYNALAAIAAGFALGLTPAEAASGLRNLKATKMRFEV--QDVKTYHVINDAYNASPMSMK 350 Query: 371 MILKNIRTITSGRIIVVFG 389 ++ + +T GR I V G Sbjct: 351 AAIETLSELTKGRKIAVMG 369 >gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM 30120] Length = 452 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 149/366 (40%), Gaps = 37/366 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+A +F+A+ G + D H F Q + GA A++V + N P Sbjct: 30 VSTDSRKIEASCLFIALKGERFDAHEFAGQVVEAGATALLVDHQLDV---------NCPQ 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++TR + A + + ++ +TG+SGK+SV I + G + + G Sbjct: 81 VIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGKTSVKEMTASILGQRGNTLYTAGNL-- 138 Query: 153 ISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P ++ L + + G H H + ++ + +K Sbjct: 139 ------NNDIGVPLTLFRLTDEYQFAVIEMGANH------PHEI-EYTTNIVKPETALVN 185 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-- 268 NL H+ + + AK +++ LP+E AI+ D K L Sbjct: 186 NLFGAHLAGFGSPEGVAKAKGEIYQG-LPEEGTAIVNLDSYSDKWQFGSRQTVWYYSLTE 244 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + + I +K++ T+ + PLPG + N L A+ L I++G Sbjct: 245 TADFYPSNIQIKQLTT-----DFTLHTPVGQVEITLPLPGVHNIANVLAASALAISVGAT 299 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV 387 + + + VPGR V + ++ +D + +N MI N+ G I+V Sbjct: 300 LEDIKQGIATTKAVPGRLFPVRLSDT--KVVLDDTYNANDGSMIAAINVLAKMPGYRILV 357 Query: 388 FGCGGD 393 G G+ Sbjct: 358 AGDMGE 363 >gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42] gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42] Length = 456 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 77/373 (20%), Positives = 148/373 (39%), Gaps = 52/373 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + I ++D+R ++ +F+ + G +GH F+PQA +G A+ L D S Sbjct: 21 EFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS 73 Query: 84 ATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-- 137 N P +++VD+T + L A + ++ VTG++GK++ + + Sbjct: 74 ---EPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKDMLHAVLGT 130 Query: 138 -----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASS 191 + +G + IG T+ + +D + A+ + +LS +V Sbjct: 131 QYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV---- 186 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 TN+G H+ +++ AK+ + L +E + Y Sbjct: 187 -----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY---- 223 Query: 252 YSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + E + R CR + G + LK++ ++ +++G D F P+ G Sbjct: 224 FGDEPLLRQKTYTCRTTTYGAGADNDLRLKEIK--QAEEGTYFNIDGIDRSFFIPVLGRH 281 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NA+ A I GI L +L V R E V T + + Y + S++ Sbjct: 282 NVMNAMAAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMK 341 Query: 371 MILKNIRTITSGR 383 ++ I T+ R Sbjct: 342 AAVELIETMKGYR 354 >gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa 9a5c] Length = 468 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 22/353 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + D+R + G ++VA+ G + D HLF +A+A+GA ++V D Sbjct: 23 RVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T + L+ AS L +LA+TG++GK+SV + + I + + S + Sbjct: 76 -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +S ++N + P + A + A G + D + Sbjct: 134 --VYANSGNRNNEIGLPLAVIAAP-----DDADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H++ + K ++ L P + A+I DDA++ ++ AGC VL Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G Q I + + + + + L G V NAL AA + + GI Sbjct: 246 RFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAMALVAGI 305 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 + L VPGR V GG + +D ++ +N SL++ + + T Sbjct: 306 PLPQIAAGLGLARSVPGR--QVAHALPGGAVLIDDSYNANPGSLDVAIDTLTT 356 >gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 456 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 47/336 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+DS I+ +FV I+G + D H FI AIA GA A++ S + N Sbjct: 26 IENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAVAVLTSEHDEMT-------GN 78 Query: 90 TPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQ-------QICQR 139 P + V NT L + YGK P+ + VTG+ GK++ + ++ + Sbjct: 79 VPYIRVSNTTMALQEIG-KYYGKLMIMPK--IGVTGSVGKTTTKEMIACALSAGYKVFKT 135 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 SG S+ QIG T+ + D+++ + + S G Sbjct: 136 SGNSNSQIGVPLTLLKMSPDDQIAV--------------------IEMGMSMRGEMSRLS 175 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMK 258 + ++L TN+G HI+ +T+ K + + + K+ I DDA +K + Sbjct: 176 ELVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDDAILNKHKSE 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK-DFDFLFPLPGEFQVYNAL 316 H R+++ G + + N T++++ K +D + GE V NAL Sbjct: 236 LRH----RIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNAL 291 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 VA + GI+ ++ L V R + N Sbjct: 292 VAIAVAERHGIEVTEAIKALAGYEGVSMRQQITDVN 327 >gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae ATCC 51259] Length = 824 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 159/355 (44%), Gaps = 33/355 (9%) Query: 27 ERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 ++ I+ + +DSR + +F A+ + DGH ++ +G VVS+ L D A Sbjct: 22 DKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYRRGVRDFVVSA---LPDDYA 78 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + VV + K L A + ++ +TG++GK+ V ++ Q L S Sbjct: 79 SRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTIVKEWLYQ------LLS 132 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202 Q+ T + S+ ++++ P + L A + L G++ ++ + Q R+ Sbjct: 133 PQLVVTRSPRSY--NSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALRPIIQPRI--- 187 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261 G TN G+ H + + + K+ LF K++ +IY ADD E +++A Sbjct: 188 ----GVMTNTGQAHQENFTSLEEKCAEKLSLF-----KDADVLIYDADDPVVAEGVRQAS 238 Query: 262 NAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 AG ++ +G + ++KV + +T + ++ DF P E V NA+ Sbjct: 239 FAGDQLAWSRTKDEGPLV-IRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIHCL 297 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 +C+ + +D+A++ + + +L V R E V RG + D Y NSL++ L Sbjct: 298 AVCLYLHVDAAVIAQRMARLEPVAMRLE-VKQGVRGCILINDSYNSDVNSLDIAL 351 >gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia pyrifoliae Ep1/96] gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia pyrifoliae DSM 12163] Length = 452 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 81/332 (24%), Positives = 132/332 (39%), Gaps = 23/332 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I QL+ + + I +V++D+R AG +F+A+ G + D H F+ AI G ++VS Sbjct: 9 IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + D S +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPV-DVSQ--------VVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G +N + P + K + + + A+ G Sbjct: 120 AILRECGETLYTAGNL--------NNDIGVPLTLLRLKPQHRYAV-----IELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ NL H++ + AK +F L P AII + Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESNDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S G + V T+ D D PLPG + N Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 AL A+ L +++G + V L L VPGR Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRL 317 >gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum infernorum V4] Length = 459 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 136/319 (42%), Gaps = 25/319 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + +DSR ++AG FVA+ G DG F+P A+++GA A++V +Q + Sbjct: 26 ISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVD---RMQPGFGPL--A 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T K L A + I+A+TG+SGK+S V + ++ + Sbjct: 81 VPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQ------KYKT 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +F +N++ P S + + K Y GV + R+ ++ Sbjct: 135 VCTSGNF--NNQIGLPLSLLQMDKTTEY----GVFELGTNHPGEIATLSRIIAPDIVI-- 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H+ + + +A K L + AI+ DD +SK + R+ AG RV+ Sbjct: 187 VTNIGSAHVGHFGSVEAIAQEKTDLL-TFVSARGFAILGTDDFWSKRLHVRS--AG-RVI 242 Query: 269 SVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 VG Q L ++ + I + F+ P N+L AA + + Sbjct: 243 WVGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSL 302 Query: 328 DSALVLEHLEKLHVVPGRF 346 S + LEK GR Sbjct: 303 SSEEITRGLEKTSFPEGRL 321 >gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium limosum KIST612] Length = 453 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 38/299 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR I+ +F+ I G K DGH FI A +G + DF I Sbjct: 26 ISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGCSTSFTET--EALDFPEGI--- 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++V++ + + A ++ ++AVTG+SGK++ + + S + Sbjct: 81 -SVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDLIASVL------SQKYKT 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS- 208 T +F +N P ++ + Q ++V G+D LD I+ G Sbjct: 134 LKTQGNF--NNEYGIPQTLF--------NLQPEHEIAV--IEMGMDH--LDDIRKSIGEV 179 Query: 209 ------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 TN+G HI+ +TQ AK +FE + P + A++ DD Y ++ + Sbjct: 180 RPHISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDI-ALLNGDDVYLNKI--KEDE 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V+ VG +G+ + LK + Q + +G+ F F + PG VYN L A L Sbjct: 237 EPFSVVRVGIKGEDLSLKAEQVDSSAQGIRFVADGEHFHFAY--PGIHNVYNCLTAIWL 293 >gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus A9719] Length = 452 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLGTLTGRRILIL 360 >gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20] gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd KW20] Length = 457 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 36/325 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++++D+R + +F A+ G K D H ++ QA++QGA A+VV Q +++I Sbjct: 24 QVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVSQGALALVV------QQENSSI-- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 76 SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ +++A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEI---SNHAI 242 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 Y K IH H Q T IS +G + + P GE V NAL A L Sbjct: 243 QYFNGKDYSAKNIH-------HTSQGSTFTLISPQG-EIEITLPYLGEHNVKNALAATAL 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346 + +G V LE+ V GR Sbjct: 295 AMNVGATLTDVKAGLEQRSQVKGRL 319 >gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Koribacter versatilis Ellin345] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 152/373 (40%), Gaps = 55/373 (14%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S DSR I+ G +F A+ G + DGH ++ A+ +GA A VVS ++F A +L Sbjct: 28 SIDSRTIKPGELFFAVKGERLDGHDYVQAALDRGAVAAVVS-----REFPARFNGTRNLL 82 Query: 94 VVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V D+ L A R HP ++ VTG++GK++ + + S L + Sbjct: 83 VADDPLLALHRLAEMVRSLWHHP--VVGVTGSAGKTTTKECIAHVLA-SKLKVLK----- 134 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 S +N P + + ++ G++H A+ L Q G Sbjct: 135 --SEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALAKLAQPN-------TGVV 185 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ H++ + AK L LP+ A++ ADD + + + H VL Sbjct: 186 TNVAPVHLENFDSIAGIARAKYELIAA-LPRGGCAVLNADDEFVSQFGRDFHGT---VLM 241 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNAL--VA 318 G +K+ + + G FD F PL GE VYNAL VA Sbjct: 242 FG-------VKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALAAVA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 G+ I I+SA+ L+ L R E V G V+ + SN +L ++ + Sbjct: 295 VGVHHGIAIESAIA--SLKTLKPADKRGEVVEI---AGATVVNDCYNSNPKALNAMVDAL 349 Query: 377 RTITSGRIIVVFG 389 + + R IV+ G Sbjct: 350 AKMPAQRRIVIAG 362 >gi|56807399|ref|ZP_00365374.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pyogenes M49 591] Length = 243 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 26/244 (10%) Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID- 218 ++LTTP + L ++ + G+TH+ +E SS R+ G+ G F N+ DHI Sbjct: 17 SQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGP 76 Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYS---KEVMKRAHNAGCRVLSVGY 272 H T + YF K LL + S A++ D +S +V + H V Sbjct: 77 IEHPTFEDYFYHK-----RLLMENSRAVVINSGMDHFSFLADQVADQEH-----VFYGPL 126 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 I + + K Q+ +D L G F NA+ A C+ +G A + Sbjct: 127 SDNQITTSQAFSFEAKGQL-----AGHYDI--QLIGHFNQENAMAAGLACLRLGASLADI 179 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + + K V PGR E V T + +++VDYAH +SLE +L + +G+++++ G G Sbjct: 180 QKGIAKTRV-PGRME-VLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPG 237 Query: 393 DRDQ 396 ++ + Sbjct: 238 NKGE 241 >gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus cereus ATCC 14579] Length = 454 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 17 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 71 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPGMNL 235 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 290 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 325 >gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa DSM 4126] gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa DSM 4126] Length = 436 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 98/399 (24%), Positives = 165/399 (41%), Gaps = 68/399 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G +F A+ G +G+ F +A+ +GA A+V+ QD TI Sbjct: 17 ICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNTI------ 70 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145 +V++ + L L A+ K IL +TG++GK++ + ++ SG + Sbjct: 71 -LVEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNN 129 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG ++ S +D+ + + G HV AS + Q Sbjct: 130 HIGVPLSLLSIQKDHEIA-------------IIEMGANHVGEIASYCQMAQP-------T 169 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G+ HI + K LF+ L + I DA K + KR NA Sbjct: 170 HGLITNIGKAHIGEFGGFENIIIGKSELFDFLKKNDGVPFINTQDAVLKNMEKRFSNA-- 227 Query: 266 RVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLC 322 ++ +G + LK K A + S EG F + L G+F N VAA LC Sbjct: 228 --ITFPNEGDDLQLKPEKGTAF-----LRYSTEG--FSHIDTHLVGQFNYLN--VAAALC 276 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--------YAHTSNSLEMILK 374 I + +EK + E++ N R I D Y +S+E+ +K Sbjct: 277 IGKYFEVT-----MEK--AIEATQEYMPENMRSQMIKTDNYTILLDAYNANPDSMELAMK 329 Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410 ++ I + +V+ G GD + + +G++A+DL Sbjct: 330 SLSAIENTESVVILGDMLELGDTAELEHEKLGELAVDLG 368 >gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-- D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MW2] gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 452 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 159/373 (42%), Gaps = 41/373 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + IN V+ DSR I +F+ G DGH F+ +A+ GA A + + Sbjct: 20 QFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPIDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 78 ---NVSGPIIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HEIEF 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + +A TN+G H+ +++ AK + L K++ IY D+ K Sbjct: 176 LSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLKPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYN 314 +K NA C + V VC++ ++ IS + K+ + P+ G+ + N Sbjct: 234 VKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHNMKN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ + ++L+ + + R E + I Y + S+ + Sbjct: 288 ATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAID 347 Query: 375 NIRTITSGRIIVV 387 + T+T RI+++ Sbjct: 348 TLSTLTGRRILIL 360 >gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Eubacterium eligens ATCC 27750] Length = 469 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/391 (21%), Positives = 155/391 (39%), Gaps = 76/391 (19%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI--------------- 71 +++I ++ DSR + G +F+AI G + DGH FI Q +GA + Sbjct: 25 DKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIGQCFEKGAACVISEKELPDEEHSYIQ 84 Query: 72 VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131 V SS +L+D + R+N + VV +TG+ GK+S Sbjct: 85 VESSLQALKDLALLYRNNLDVKVV-----------------------GITGSVGKTSTKE 121 Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + + +++ T+ +F +N + P ++ L+ V + + Sbjct: 122 TISSVLSEK----YRV--LKTLGNF--NNEIGLPLTVF---RLTEDDEVAVLEMGIS--- 167 Query: 192 HGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 D +D + IA TN+G H++ T+ AK +F + P + I+ Sbjct: 168 ---DFGEMDRLSKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNP-DGIVILN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD------- 299 DD + + H G R L G K ++ + ++ + ++ G D Sbjct: 224 GDDD-KLSTISQVH--GKRPLVFGISNKDGVYADNIKSL-GLDGTSFTIHGLDTADKYST 279 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 FD P+PG VYNA+ AA + +G+ S + + L + GR + N G Sbjct: 280 FDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKEN---GFTI 336 Query: 360 VDYAHTSNSLEMILK-NIRTITSGRIIVVFG 389 +D + +N + M ++ GR + + G Sbjct: 337 IDDCYNANPVSMKASLDVLDTAIGRKVAILG 367 >gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 172560W] Length = 458 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK353] Length = 456 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 97/416 (23%), Positives = 172/416 (41%), Gaps = 75/416 (18%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A + Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------- 67 Query: 84 ATIRSNTPI-----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 S+ P+ ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 68 ----SDRPVAEGAYILVDDVLAAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + +IG T+ +D + G H+ Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305 +++ A C+++ G I L ++ +++ ++S E +FL P Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLP 268 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + G++ NA++AA + G+ A + + +L + R E+ S G I D Y Sbjct: 269 VTGKYNATNAMIAAYAALQEGVAEAAITQSFSELELTRNRTEWKKA-SNGADILSDVYNA 327 Query: 365 TSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 ++ +IL+ TI S GR + V + + + G + L + IVTD Sbjct: 328 NPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ATCC 53516] Length = 454 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 157/355 (44%), Gaps = 55/355 (15%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL N +I ++ + + +S+D+R I+ +F+A+ G+ DG +I A +GA Sbjct: 7 KTITELTN--TIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 69 EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 VV+ Y ++ D+ P++ VDNT++F+ A ++A+TG++GK+ Sbjct: 65 SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116 Query: 128 SVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 + + ++ + + +IG + TI D + A+ + ++ Sbjct: 117 TTKDIMSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEV----------AVLEMGTE 166 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +S + D I +I TN+G H+ +T++ AK + E L + Sbjct: 167 NFGEISQLTNIAHPD------IAMI----TNIGDSHLLNLKTKENIARAKFEILEG-LKE 215 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTIS 294 + I+ DD +EV K+ + + +S G Y+ + I + + T S Sbjct: 216 DGIFILNNDDPVLREV-KQEYKLPEKTISFGIKPDSDYRMEMIKADETGS-------TFS 267 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + D F L G Q+YNA ++ + +G+D + V + L+K+ + R E + Sbjct: 268 I--NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDVAKGLKKIELTGMRNELI 320 >gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 10876] Length = 454 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 17 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 71 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 290 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 325 >gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus halodurans C-125] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 97/457 (21%), Positives = 190/457 (41%), Gaps = 52/457 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +FV ++G + DGH ++ QA+++GA+A + +++ + + ++++ + Sbjct: 26 VSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASLWATSVPVPE---SLKNEDRL 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145 L V++T L A + ++AVTG++GK++V + I + G + Sbjct: 83 LFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDLLYATLAPLGSIYKTQGNYNN 142 Query: 146 QIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG P + +S A L + + LS ++V Sbjct: 143 HIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIAV----------------- 185 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ +++ AKM + L P +++ D + ++ G Sbjct: 186 ----VTNIGESHLEQLGSRENIAKAKMEIALGLKPT---GVLFLDG--DEPLLSHYVKEG 236 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + + K + + + A + TI D + GE V NA A + + Sbjct: 237 VQTVGFSSENKIV-IHDLEAREDGYSFTIDEHSYDIKLI----GEHNVKNAAYAVSVALH 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-G 382 +G+ V LE++ + R E + +G + D Y + S++ +K ++ + Sbjct: 292 LGLSPEQVARSLERVAISKMRLEKI-EGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYE 350 Query: 383 RIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 + + V G G D + R + +I + +V + D K R I + Sbjct: 351 KKVAVLGDIYELGIDEEALHRSVADEITEPITTAVLVGEKGQWIADEMKRRGSNIPFV-S 409 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475 F+EK + I ++ K VL A +G E IV Sbjct: 410 FVEKEEATDYIEGLLD--GKTVVLFKASRGLELESIV 444 >gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 468 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 43/371 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R ++AG +FVA+ G DG F +A+ +GA A++V +A ++ + Sbjct: 31 ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145 LV ++T + A K ++A+TG++GK++ V S ++C+ + + Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G T+ S ++ T VE G+ Q + + I Sbjct: 151 EVGLPLTLLSITPED----------------------TAAVVEIGMRGMGQ--IAALAPI 186 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A G TN+ H++ + + AK L +P I+ ADD M+ + Sbjct: 187 AEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAG-MRSSA 244 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G RV++ G + + + + + + ++ G+ ++ LPG V NAL A Sbjct: 245 ADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSNALAALA 304 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRT 378 +G+ + E L L R+E + G ++ Y + +S+ L+ Sbjct: 305 AGFVLGMTPQEMQEGLTHLTAEKMRYEV---HQVGAWTLINDAYNASPSSMRASLETTAA 361 Query: 379 ITSGRIIVVFG 389 + GR + V G Sbjct: 362 LYPGRRVAVLG 372 >gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 482 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 141/344 (40%), Gaps = 32/344 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +DSR I +FVA+VG + D H F+ A G A ++SS QD ++ Sbjct: 32 LSRVGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISS----QD---KCPAD 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + V NTR L A HP + VTG++GK++V + I + + +G Sbjct: 85 LPAICVSNTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIFKAA------VGE 138 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+ + +N + P + ++ L+ G+ H A + Q I LI Sbjct: 139 QHTLVTKGNLNNDIGLPLTLLKLRSTDRLAVVELGMNHPGETAQLAVIAQAN---IALI- 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N R+H ++ T A L P + AI AD ++ + R AG + Sbjct: 195 ---NNAQREHQEFMATVAAVAEEHSDAIRTL-PSDGVAIFPADSEFAG--VWRQAAAGRK 248 Query: 267 VLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ Q K C + N V I E + G V NAL A+ + I Sbjct: 249 VIDFVLSSAQTKASAAVTGCLLSNGL-VQIKSEQGTIEVQLNTLGSHNVRNALAASAVGI 307 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A G+ + + LE V GR + +S R +D ++ +N Sbjct: 308 AAGVSLEKIKQGLESFSPVNGRMQAKAIDS--SRTLIDDSYNAN 349 >gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio alginolyticus 12G01] Length = 454 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I+ VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 ELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P +VV +T+ L FAS ++ +A+TG+ GK++V V I Q G F Sbjct: 74 --NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFT 131 Query: 147 IG 148 G Sbjct: 132 AG 133 >gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. aB] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 23/317 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V++D+R + AG +FVA+VG + D H F +AI GA+A++VS + + Sbjct: 24 LNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGAQALLVSKHLPV---------S 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV++TR ++ + + ++A+TG+SGK+SV I + G + + G Sbjct: 75 VPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N P + L + + + A+ G + D +K + Sbjct: 135 L--------NNDYGVPMTL-----LRLTAEHQYAVIELGANHQGEIAYTTDLVKPESALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F+ LP AI+ + + S Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPANGIAILNEESNDWPNWQTTLQDKTVWRFS 240 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + + + + + + PLPG + NAL AA L +++ Sbjct: 241 PQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAAALALSVDAPL 300 Query: 330 ALVLEHLEKLHVVPGRF 346 + V + L+ L VPGR Sbjct: 301 SAVQQGLKNLQSVPGRL 317 >gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK49] Length = 456 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 74/388 (19%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A VV AY Sbjct: 20 QFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSERPVVEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G + +IG T+ +D + G H+ Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305 +++ A C+++ G I L ++ +++ ++S D +FL P Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQSIDLP 268 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + G++ NA++AA + G+ A + + +L + R E+ + G I D Y Sbjct: 269 VTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327 Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389 ++ +IL+ TI + GR +VV Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLVVLA 355 >gi|289810798|ref|ZP_06541427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 160 Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 TT S + + L+ L +QG T ++E SSHGL QHR+ +K A FTNL RDH+DYH Sbjct: 18 TTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGD 77 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADD 250 Y AK L+ AI+ ADD Sbjct: 78 MAHYEAAKWMLYST--HHHGQAIVNADD 103 >gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia sp. 1_1_43] Length = 452 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LPK AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPKNGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans Agy99] gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans Agy99] Length = 488 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + +AY E L P + ++ ADD S + +R+ G RVL Sbjct: 189 TNIEADHLDFYGSTEAYVGVFDAFVERLAPGGA-LVVCADDPGSAALAERSAELGIRVLR 247 Query: 270 VGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G G + +Q Q+ ++ E +PG N L A Sbjct: 248 YGSAGHAGAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNVLGALLAA 307 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 I +G VL+ L V RFE VGT + R++ DYAH + L+ +R++ Sbjct: 308 IEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAVRSVVRQ 366 Query: 381 --SGRIIVVF 388 SGR++VVF Sbjct: 367 SGSGRLLVVF 376 >gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halorhodospira halophila SL1] gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Halorhodospira halophila SL1] Length = 450 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 47/345 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR +G +FVA+ G + DGH F A A+GA A++ + Sbjct: 25 VTGVALDSRRATSGSLFVALPGARCDGHDFADDAAARGAVAVLGTRPVG----------A 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV++ L++ + + ++AVTG++GK++V + + SG P Sbjct: 75 LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKTTVKELLAAMLAESG-------P 127 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVEASSHGLDQHRLDGIKLI 205 T + ++N L P L G H + + A++ G + Sbjct: 128 T-LATEGNRNNLLGVPE---------MLCRLGAGHRFAVIEMGANAPGEIAQLTAWAQPD 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN G H++ + AK LF+ L P++ A++ ADD + + R Sbjct: 178 VGVVTNAGPAHLEGFGSLDGVARAKGELFQGL-PRQGVAVLNADDDFCG--LWREMAGAR 234 Query: 266 RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R L+ G G+F H + ++ + + G PL G N AA A Sbjct: 235 RCLTFGADAGQFRHRG------HGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAACAAA 288 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSN 367 + + + +L+ + VPGR E RG G VD + +N Sbjct: 289 LEVPARTILDRISSAAAVPGRLEL----RRGDHGGWLVDDTYNAN 329 >gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus ATCC 7061] Length = 454 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/336 (20%), Positives = 141/336 (41%), Gaps = 42/336 (12%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E +I V++D+R + G +F+ ++G +GH F +A+ GA A++ + + F Sbjct: 22 FGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELGAAAVLWNQKEANPPFG- 80 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+++VD+T L A + ++ +TG++GK++ + + Q ++ Sbjct: 81 -----VPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKDMIHSVLQ----TT 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +Q+ T +F +N + P I L+ + + + S+ G + + + Sbjct: 132 YQVHKTD--GNF--NNHIGLPLTI-----LAMPEGTEIAVLEMGMSAKGEIEFLSNLAEP 182 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKE 255 TN+G H+ +++A +AK + + L K+ Y D A S++ Sbjct: 183 ETAVITNIGESHMQDLGSREAIADAKCEITKGL--KKDGTFYYLGDEPLIRDRATALSQQ 240 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 V C + K H+ ++ + VEG FL P+ G+ V NA Sbjct: 241 VKTFGEAEDCDI-------KVTHINQLA-----EGTEFQVEGYAQGFLIPVLGKHNVKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 L A + G++ + + L + + R E T Sbjct: 289 LAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKT 324 >gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC 35316] gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cancerogenus ATCC 35316] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q ++ I++V++D+R + AG +FVA+ G + D H F+ A GA A++VS + Sbjct: 17 LQGQDLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKENGAGALLVSRKLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P +VV +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G +N + P + L + + A+ G + Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTKEHEFAVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 A NL H++ + + AK ++ LP + AI+ AD+ S Sbjct: 175 CPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPADGIAIMNADNNDWLNWQSIIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ + + NA + + IH+ + + T++ D L PLPG + Sbjct: 234 RKTWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLNTPTGGVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +A+G + L L VPGR Sbjct: 285 NALAAAALSMAVGASHDAIKTGLANLKAVPGRL 317 >gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus Blochmannia floridanus] Length = 462 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S++S I+ +F+A++G + DGH FI QA+ GA+A++V+ S+ N Sbjct: 26 INTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAVMAGAQAVLVNRYVSV---------N 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V +T L AS L + ++A+TG+SGK+SV + I + G Sbjct: 77 VPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKTSVKNMTVSILKNCG 128 >gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep ecotype'] Length = 469 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 61/334 (18%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I++G +++A+ G +GH FI A GA A++ S + ++ P+ Sbjct: 29 VSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGASAVIASE---------NVTTSLPV 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V++T++ L L + + +A+TG+SGK++V I R G +T Sbjct: 80 ISVEDTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEMCAAILARRG------NVLAT 133 Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +F +N + P + + L Y + G H+ A + L +K + Sbjct: 134 NGNF--NNDIGVPLTLLRLEPHHEYAVMELGANHLGEIAYTTNL-------VKPDVATIV 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N H++ + AK +F+ L K+ AI+ D +++ Sbjct: 185 NAAASHLEGFGSLLGVARAKSEIFKG-LEKDGVAIVNVDSQFAEF--------------- 228 Query: 271 GYQGKFIHLKKVC--------AIHNKQQVTISVEG-KDFDFLFP---------LPGEFQV 312 +QGK K + A + +TI ++G F + P +PG V Sbjct: 229 -WQGKLKQTKTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQLTIPGVHNV 287 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NALVAA L + +G + V + L + V GR Sbjct: 288 GNALVAAALTLQVGANLENVRDGLIAMQQVSGRL 321 >gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp. RUH2624] Length = 466 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I +N LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDANIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTTEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + ++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HHIMSFGTGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLDDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 444 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 61/369 (16%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 E S D+R I +F A+ G+K+DGH F+ +A+ + + A+V S DF N Sbjct: 25 EASIDTRTIGKNDLFFALKGSKKDGHEFVDEALIKASGAVV--SKNEGMDF-----KNKT 77 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQ---QICQRSGLSS 144 +++VD+T K L A L K I+AV G++GK++ +ASF+ +I + G + Sbjct: 78 VVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTKELIASFLSKKYKILKTEGNFN 137 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG IS R+ + I + + + + G + D + Sbjct: 138 NNIGVPLCIS------RIENNTEIMV--------------LELGTNRPGDIKELCDIVYP 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G +HI+ + Q ++ E+LP DD + + +KR Sbjct: 178 DYALITNIGYEHIEGFGSIQGVREGEL----EILPYVKTVFANGDDKFLMDGLKRYSG-- 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNA 315 ++L+ G + K C + + + +FDF PL G + +YN Sbjct: 232 -QILTFG-------MSKECDFR-AENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNL 282 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 A + +GI + + E V R E + N G I+ D Y +S+++ L+ Sbjct: 283 TGAIAVATFLGISKCSIQQITESFTSVKMRGEIIKIN--GVEIFFDAYNANPSSMKVALQ 340 Query: 375 NIRTITSGR 383 + GR Sbjct: 341 ELTRRKKGR 349 >gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185] gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR+ A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (murF) [Anaplasma marginale str. Mississippi] Length = 456 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 80/364 (21%), Positives = 154/364 (42%), Gaps = 35/364 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R ++ G IFVAI G DGH F+P+A ++GA A VV + S Sbjct: 17 LGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVV------DEVSVPTADC 70 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T + L A+ ++A+TG++GK++ + + G + Sbjct: 71 GPLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYY---- 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + A N L P+Y A ++ V +E + + +D + IA Sbjct: 127 -----NEANYNNLIG-MPLYAANL-----TEDAEFVVLEMGMNSPGE--VDALSRIARPD 173 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H+++ ++ + AK+ +F + + A++ D Y ++ A + Sbjct: 174 VAVITNVGPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCA 232 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 R++S G G ++ VT G++ + Y+ + A + A Sbjct: 233 RIISFGV-GAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAF 291 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMI--LKNIRTITS 381 ID +E+ VP V + GR + +D A+ +N L M+ ++N+ + Sbjct: 292 SIDLTQARGAMEEF--VPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNH 349 Query: 382 GRII 385 R++ Sbjct: 350 ARVL 353 >gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1] Length = 478 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 130/348 (37%), Gaps = 50/348 (14%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++AV GT GK+S S V Q +G SF IG ++S + +++ +A Sbjct: 114 RLVAVAGTHGKTSTTSMVTVALQHTGADPSFAIGGDLSVSGSGAHH---GSGDVFVVEAD 170 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S SV TN+ DH+D+H + Y R Sbjct: 171 ESDGSFTAFAPSVAV-------------------VTNVEPDHLDHHGDEATYRAVFERFL 211 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQV 291 E L+P + + ADD S+ V A AG V G + L + Sbjct: 212 ERLVPGAT-LVTCADDPGSELVAVHAERAGITVRRYGRTATGSQDARLLDFAPDGVGSRT 270 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 G++ + +PGE NAL A A+ D A +LE L V RFEF G Sbjct: 271 RFRWGGEEHELALGVPGEHMALNALGAFLAGTAVDQDPAALLEGLAGFGGVQRRFEFKG- 329 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKI 405 RG +Y DYAH + L+ R GR++V F R G+ Sbjct: 330 RVRGVAVYDDYAHHPTEVAATLRAAREAAPVVQGRRGRVLVAFQP--HLYSRTRLFAGEF 387 Query: 406 --ALDLADIAIVTDDNPRSEDPE------------KIRAEIIHGIPGF 439 +L LAD +V D EDPE ++ AE +H P + Sbjct: 388 GASLSLADEVMVLDVYGAREDPEPGVGPALITDQVRLPAERVHRAPSW 435 >gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Mesorhizobium opportunistum WSM2075] Length = 477 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 91/386 (23%), Positives = 142/386 (36%), Gaps = 30/386 (7%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ + P+ I+ +S DSR +Q G F AI G DGH F AI GA +VV Sbjct: 10 LVTAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKAGAGVLVV 69 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + R PI+VV++ L + I+AVTG++GK++ + Sbjct: 70 AEG----KLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKTTTKEAL 125 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + G + + AQ P+ LA+ + E + Sbjct: 126 RHVLSAVG----------KVHASAQSFNNHWGVPLTLAR-----MPVDCDYAVFEIGMNH 170 Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 D+ R + ++ T + H+ + + AK +FE + P + AI+ DDA Sbjct: 171 PDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEP-DGAAILNRDDA 229 Query: 252 YSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 K + K AH AG V G + C +H + + + G D PG Sbjct: 230 RFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGR 289 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------YVDYA 363 V N L G + D V+ L L GR + GG I Y Sbjct: 290 HMVQNVLAVLGAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANP 349 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG 389 + + +L GR I V G Sbjct: 350 ASMAAAMALLNTTPVAGEGRRIAVLG 375 >gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema succinifaciens DSM 2489] Length = 477 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 44/334 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIR 87 I V +DSR ++ +FV ++G +DGH ++PQAI +GA + +S + + ++ + Sbjct: 30 IKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEKGASVVFISMKNFENNGNYFVELH 89 Query: 88 SNTP---ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLS 143 P + V+NT + L A+R K P I + VTG+SGK++ + I + Sbjct: 90 EKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGVTGSSGKTTTKEILVSILSQK--- 146 Query: 144 SFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 IS+ N T P ++ +A H E + +R + I Sbjct: 147 ------YKVISNKGNLNSETGLPLSVFNIRA---------EH---ECGVFEMGMNRENEI 188 Query: 203 KLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 IA TN+G HI +++ K ++F +I DD +S + Sbjct: 189 GEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIF-SYFGGFGTGVIPVDDEFS-D 246 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 +K + V Y +K +C + K S++G + + PLPG++ +A Sbjct: 247 FLKNEIDGKV----VFYGNDTDSVKYICDMGLK-GTKFSIDG--IETILPLPGKYNYKDA 299 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 L A L +G+ S + + + L + GR E + Sbjct: 300 LGAIALAQVLGLSSRQISDGISSLKPLSGRSEIL 333 >gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfotomaculum nigrificans DSM 574] Length = 456 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 102/458 (22%), Positives = 189/458 (41%), Gaps = 48/458 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N + +DSR + G IFVA+ G + DGH F +AI QGA A++V+ + T+ Sbjct: 25 EVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQGATALLVTK-------TVTVPP 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ V +T + L A+ + ++AVTG++GK+S + + Sbjct: 78 QVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTKDMIAAVLNTR-------- 129 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIA 206 T+ + N LA ++ ++ VE G + L K Sbjct: 130 -YKTLKTQGNYNNELGLPLTLLALDQTHQAA------VVEMGMRGFGEIDLLARLAKPTG 182 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G H++ + Q AK + + + E AI+ D S E+ + + Sbjct: 183 AVITNIGEAHLELLGSVQNIAAAKAEVLDHI-GAEGFAILNGD---SPELRNQVSRCQGQ 238 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V G+ + + + + + +S G + P+PG V N++ A G+ + + Sbjct: 239 VWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVGLRL 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384 GI ++ L ++ + R E + N+ + D Y +S + LK + + GR Sbjct: 299 GIPFTDIVRGLAQVELTGMRLEIIKANNM--TVINDVYNANPSSTKAALKVLAEVAPGRK 356 Query: 385 IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440 I V G G + G R + AL + D R I+ G+PG Sbjct: 357 IAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKG----GLPG-- 410 Query: 441 EKGNRIEAIRTAIEMLNK----QDVLVVAGKGHETVHI 474 ++ + + + AIE+L + D ++V KG ++H+ Sbjct: 411 DRVHHCDNNKLAIEVLRQVMQPGDTILV--KGSRSMHM 446 >gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270] Length = 456 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 73/343 (21%), Positives = 142/343 (41%), Gaps = 40/343 (11%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 ++ +++ I VS+D+R IQ +F+ +VG K DGH F A+ +GA A + + Sbjct: 16 TLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKGAVATLWDKRHP 75 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 A I++VDNT + AS ++ +TG++GK+ + I + Sbjct: 76 TPYLDA------GIIIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKDILASILK 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +F++ T+ +N + P I + E + R Sbjct: 130 E----NFRVHNTAK----NLNNEIGVPKTIM------------EMDLDDEVVVLEMGMER 169 Query: 199 LDGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 IK + TN+G H+ T++ AK + E L P + I DD Sbjct: 170 FGEIKTLTNIARPDIAVITNIGDSHLLELGTKENIARAKFEILEGLKP-DGVFIFNNDDE 228 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +EV+K + +V+ +G + + ++ + + +I ++ + P G+ Sbjct: 229 VLREVIKE-YTITQKVIKIGTREDSDVIIRPIRSDEEGSSFSIG----EYAYSIPFIGKH 283 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 Q+YNA VA + +G++ ++ L ++ + R E + +S Sbjct: 284 QIYNASVAITIAGLLGMNYGDIVRGLSRVKLTGMRMELIHLSS 326 >gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanibulbus indolifex HEL-45] Length = 477 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 143/352 (40%), Gaps = 46/352 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N VS D+R +Q G +FVA+ + DGH F+ QA+ GA A +V+ + + Sbjct: 24 NGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDSGAGAALVTH------VPEGVGEDA 76 Query: 91 PILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLS 143 P+L+V++ + L A R + AVTG+ GK+S +A F Q + + Sbjct: 77 PLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTSTKEMLLAIFGDQGKAHASVD 136 Query: 144 SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S+ G T++ +D Y + + ++ +A H Sbjct: 137 SYNNHWGVPLTLARMPRDTD-------YAVIEIGMNHPGEIAPLAKQAQPH--------- 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A TN+ H++ + A K +F+ + P A+I AD +S V+ +A Sbjct: 181 ----AAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPG-GVAVINADHDHSDIVLDKAL 235 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R + G +G L V V G + PG NAL A + Sbjct: 236 ERGLRETTFGRKGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALAV 295 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEMI 372 A+G D AL ++ L GR+ +VG R +I +D +LE+I Sbjct: 296 AEALGADRALAVQSL-------GRWSPYVGRGVR-EQILLDPVDNHLTLELI 339 >gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter koseri ATCC BAA-895] gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 160/378 (42%), Gaps = 49/378 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + I+ V++D+R + G +FVA+ G + D H F A GA A++VS Sbjct: 17 LQGADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVSRP------ 70 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 71 ---LDCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + + G +N + P + + L Y + G H A + GL + Sbjct: 128 TLYTAGNL--------NNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVGLTRPEAA 179 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--------- 251 NL H++ + AK ++ LP AI+ AD+ Sbjct: 180 -------LVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPVNGIAIMNADNNDWLNWQGII 231 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 ++V + + NA + + IH+ + + T+ D D L PLPG Sbjct: 232 GDRKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGDIDVLLPLPGRHN 282 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369 + NAL AA L +A+G + L L VPGR + N ++ +D ++ +N S+ Sbjct: 283 IANALAAAALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDN--QLLLDDSYNANVGSM 340 Query: 370 EMILKNIRTITSGRIIVV 387 ++ + + R++VV Sbjct: 341 TAAVQVLSEMPGYRVLVV 358 >gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SMS-3-5] Length = 452 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F L P+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +A+G + L L VPGR Sbjct: 285 NALAAAALSMAVGATLDAIKAGLANLKAVPGRL 317 >gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter sp. K31] Length = 472 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 162/364 (44%), Gaps = 36/364 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR ++ G +FVA+ G + DGH F+ Q +GA ++S ++ P Sbjct: 38 VSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVAI-----------PA 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V++T L + P+ AVTG+ GK+SV V+ +R+G + + Sbjct: 86 VLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTSVTRAVEAGLRRAGKAH------A 139 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFT 210 ++ S+ +N + P+ LA+ + + + V V + +H + L G I+ A + T Sbjct: 140 SVKSY--NNHIGV--PLTLAR-MPRDTQRAVFEVGM---NHSGEITPLSGFIRPHAVAIT 191 Query: 211 NLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 +G H++ + ++ AK +F + P A++ AD+ + + A AG V S Sbjct: 192 TVGPVHLENFADGEEGVARAKAEIFAGIEPN-GVAVLNADNPWFPLLKAEAEKAGAEVWS 250 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G +G L + A N +T + G F G N+L + A+ +D Sbjct: 251 FGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVLLMLEALDVD 310 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI--RTITSGR 383 L L + + GR + GG VD ++ +N S++ LK + R + R Sbjct: 311 RETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTLGAREVAGRR 370 Query: 384 IIVV 387 I+V+ Sbjct: 371 IVVL 374 >gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM 15897] Length = 447 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 73/329 (22%), Positives = 147/329 (44%), Gaps = 40/329 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N + D+R IQ G +++ +VG K DGH +IPQA +GA A + + ++D S + Sbjct: 20 DDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAAATLTNRP--IEDDSHNV 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++V++T K L A + ++ +TG++GK+S + + S Q Sbjct: 77 ------ILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMIASVI------SQQ 124 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T +F +N + P L+ L G + +E + L++ +D + IA Sbjct: 125 YTTLKTQGNF--NNNIGLP--------LTILRYNGEEVMVIEMGMNHLEE--IDYLTKIA 172 Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN+G HI +++ AKM + + ++ D+ +++ H Sbjct: 173 LPDIAAITNIGTAHIGELGSRENILQAKMEIVHGM--NHGTLVVNNDN----DLLSTVHP 226 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAG 320 G + ++G + LK I N+ + + V G+D+ +PG ++NAL+A Sbjct: 227 EGISLKTIGIESDA-DLKATDIILNEDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQ 285 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + I + +E + R + + Sbjct: 286 IGLLLDIPMEKCIRGIETFELTKNRNDIL 314 >gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter sp. ATCC 27244] gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194] Length = 465 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 143/352 (40%), Gaps = 30/352 (8%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F + +I + +DSRH + G F+A+ G + D H F+ Q AQG + +V Sbjct: 28 FRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQGCQIAIVERP---- 83 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 I S+ L+V +TR L + R ++A+TG+SGK++ + I R Sbjct: 84 -----IDSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTTKEMLGSILSR 138 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + PT I+ +N L P + L + + A+ G + Sbjct: 139 -------LAPT-LITRGNLNNDLGVPMML-----LELRPEHQFAVMELGANHQGEIDYTS 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + ++ N+G H+ + AK ++ +LP + AI+ +DD ++ + + Sbjct: 186 NLVQPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILP-DGTAIVPSDDDFTATIRQN 244 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A N +LS G +G ++ ++ Q + P G V NA A Sbjct: 245 AGNH--PILSFG-EGGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAAT 301 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +AIGI +++ LE+ GR F+ +++D + +N M Sbjct: 302 AFALAIGIPLDDIVQGLEQAQGAKGRLNFI---QHQNYLFIDDTYNANPTSM 350 >gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus prevotii DSM 20548] Length = 460 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 78/335 (23%), Positives = 148/335 (44%), Gaps = 47/335 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+DSR IQ G +++ ++G DG LFI + +GA A L D I++N Sbjct: 27 IKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKGASAF-------LADTDCKIKNN 79 Query: 90 --TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS----- 140 P + V++T K L A R Y +N ++ +TG++GK++ + ++ + Sbjct: 80 ISIPYIRVEDTLKSLQDLA-RAYRSELKNTKVIGITGSNGKTTTKDLLYEVLKEKYKVQK 138 Query: 141 --GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +IG TI S +D + A+ + + +S+ + D Sbjct: 139 TIGNLNNEIGVPKTILSLDEDTNI----------AIVEMGTDSFGDISLTTNISRPD--- 185 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I +I TN+G H++ +T++ AKM + E L + IY D + + Sbjct: 186 ---IAII----TNIGDSHLEKLKTKEGILKAKMEIVEGL--SQDGYFIYNGDDPTMKKEI 236 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++ +++S G + + K + N+ +V+ + +G+ + PL G +YN V Sbjct: 237 SSYEVKQKMISFGEEDDNDFVVK-SSDDNRGKVSFTHDGE--TYTIPLLGSHNIYNGGVT 293 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVG 350 + +G+ + + + L ++ R EF G Sbjct: 294 VLVSSLLGLSTDQIKKGLSEVTPANNRSSIIEFEG 328 >gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus aureus subsp. aureus H19] Length = 438 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 80/376 (21%), Positives = 160/376 (42%), Gaps = 41/376 (10%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + + ++IN V+ DSR I +F+ G DGH F+ +A+ GA A + Sbjct: 3 LKINFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID 62 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 + + P++ V++T L A + Y +H ++AVTG++GK++ ++ + Sbjct: 63 E-----NVSGPVIWVEDTLTALQQLA-QAYLRHVNPKVIAVTGSNGKTTTKDMIESVLH- 115 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR 198 + F++ T +N + P L+ L T +S+ E G H Sbjct: 116 ---TEFKVKKTQG----NYNNEIGLP--------LTILELDNDTEISILEMGMSGF--HE 158 Query: 199 LDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYS 253 ++ + +A TN+G H+ +++ AK + L K++ IY D+ Sbjct: 159 IEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLL 216 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQ 311 K +K NA C + V VC++ ++ IS + K+ + P+ G+ Sbjct: 217 KPHVKEVENAKCISIGVATDNAL-----VCSVDDRDTTGISFTINNKEH-YDLPILGKHN 270 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + NA +A + +G+ + ++L+ + + R E + I Y + S+ Sbjct: 271 MKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRA 330 Query: 372 ILKNIRTITSGRIIVV 387 + + T+T RI+++ Sbjct: 331 AIDTLSTLTGRRILIL 346 >gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Photorhabdus asymbiotica] Length = 459 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 60/388 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +V++D+R ++ G +F+A+ G + D H F A+ GA A++VS ++ N Sbjct: 30 IRDVTTDNRKVENGSLFIALKGERFDAHDFSADAVKAGAGALLVSRVLAI---------N 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV++TR + A + + ++A+TG+SGK+SV I ++ G + + G Sbjct: 81 CPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGN 140 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-GLDQHRLDGIKLIAGS 208 +N + P ++ L+ Q V +SH G + ++ ++ Sbjct: 141 L--------NNDIGVPLTLF------RLTEQHEFAVVELGASHVGEIAYTVEMVRPETAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEV--------- 256 NL H+ + + AK +F LP++ AII D AY ++V Sbjct: 187 VNNLFAAHLADFGSLASIAKAKGEIFTG-LPEKGTAIINVESNDWAYWQQVIGDKTVQRF 245 Query: 257 -MKRAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 M++A A + I +K++ +H T + PLPG+ V Sbjct: 246 SMQQASGA-------DFYATDIQVKQLTTDFCLHTPIGST--------EINLPLPGKHNV 290 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLE 370 NAL A+ L I++G + L +L VPGR + N G++ +D + +N S+ Sbjct: 291 ANALAASALAISVGATLRDIRLGLSELRAVPGRLFPI--NLAEGKLLLDDTYNANVGSMT 348 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGK 398 + ++ + + R++VV G +Q + Sbjct: 349 VAVQVLSQMPGYRVMVVGDIGALGEQSE 376 >gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 468 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W + + V+ DSR +QAG +F+ ++G DGH +I AI GA A + +S D + Sbjct: 27 WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 80 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P+++V +T L K ++AVTG++GK++ + + S Sbjct: 81 DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------S 134 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203 Q T T ++F +N++ P ++ LS + T V V G+D LD + Sbjct: 135 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 182 Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + T +G HI++ T+ +AKM + L KE I+ D + +R Sbjct: 183 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGD--EPLLQER 238 Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + G + + + Q S+ D + P+ G + V NAL A Sbjct: 239 AKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAA 297 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 + I A + + R E++ T RG I D Y + +L Sbjct: 298 LLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVLAAFA 356 Query: 378 TI-TSGRIIVVFG 389 + T G+ I V G Sbjct: 357 AVPTKGQRIAVLG 369 >gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Dixon] gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M12] Length = 468 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 17/245 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + D+R + G ++VA+ G + D HLF +A+A+GA ++V D Sbjct: 23 RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T + L+ AS L +LA+TG++GK+SV + + I + + S + Sbjct: 76 -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 SS ++N + P + A + + A G + D + Sbjct: 134 --VYASSGNRNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H++ + K ++ L P + A+I DDA++ ++ AGC VL Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245 Query: 269 SVGYQ 273 G Q Sbjct: 246 RFGLQ 250 >gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ochrobactrum anthropi ATCC 49188] Length = 476 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 160/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G + DGH F+ A+A GA +VV+ + L F S Sbjct: 27 ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAAGAGLLVVAE-HRLPAFG---NSK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L+ + I+AVTG+ GK++ ++ + G Sbjct: 83 VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVH----- 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++++SF +N P+ LA+ + + GV + + + H + + ++ Sbjct: 138 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--NHHDEIRPLVKMVRPHVALI 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD K++ + A AG ++ Sbjct: 190 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFKQLEELAEKAGVEHIA 248 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 249 TFGENARSDYRLREVKLHPTCSC-----MTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +G D A V+ + L GR V + G +D ++ +N S+ L + + Sbjct: 304 DLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHST 363 Query: 380 TS----GRIIVVFG 389 T GR I V G Sbjct: 364 TPEGSRGRRIAVLG 377 >gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus caprae C87] Length = 378 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 39/372 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDF 82 Q+ IN V+ DSR+I+ +F+ G DGH F+ QA+ GA A L +D Sbjct: 20 QYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGAGASFSEKGTELNEDI 79 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 PI+ V++T K L A ++AVTG++GK++ ++ + Sbjct: 80 EG------PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLT---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + IA TN+G H+ +++ AK + L KE+ IY D+ K Sbjct: 176 LSSIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KENGTFIYDGDEPLLKSH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNA 315 +++ + A R++SVG G L VC + + + I+ D + F P+ G + NA Sbjct: 234 LEQLNKA--RLISVGL-GNSNTL--VCHVDDIETEGIAFTINDKESFTLPILGTHNMKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +A + +G+ + +++ + + R E T + I Y + S++ + Sbjct: 289 TIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDT 348 Query: 376 IRTITSGRIIVV 387 + ++ +I+++ Sbjct: 349 LSSMEGRKILIL 360 >gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 453 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 165/376 (43%), Gaps = 58/376 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E+ DSR ++ G +FVA+ G + DGH F +A + GA ++ ++ Sbjct: 24 ITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQSHGAVGLLSECLLPIK--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TRK L A+ + + ++A+TG+SGK+SV I ++SG + G Sbjct: 75 LPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKTSVKEMTAAILRQSGHVLYTKG- 133 Query: 150 TSTISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +F +NR+ P +P + L +SQ A S R + + Sbjct: 134 -----NF--NNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAALS------RPENVL 180 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKEVMKRA 260 + TNL + H+ + + AK + L P + AII+A D K V + Sbjct: 181 I-----TNLAQAHLSGFGSLKGVAKAKGEILTALAPTGT-AIIHATSHDWPKWKSVFR-- 232 Query: 261 HNAGCRVLSVGYQ-GKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 G R+ G + GK + HL K+ + T+ PLPG V N Sbjct: 233 ---GKRLWRFGLEKGKEVDFFASHLSKMPLATD---FTLHSPLGSQKIYLPLPGLHNVLN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 AL A+ L I++G D + + + L +L VPGR F + G++ +D + +N MI Sbjct: 287 ALAASALAISVGADLSAISKALSELKPVPGRAFPMI---LGPGKLLLDDTYNANVGSMIA 343 Query: 374 KN--IRTITSGRIIVV 387 + + R++VV Sbjct: 344 ATEMMSNMPGYRVMVV 359 >gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 458 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum WCFS1] gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum JDM1] Length = 462 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 38/373 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W + + V+ DSR +QAG +F+ ++G DGH +I AI GA A + +S D + Sbjct: 21 WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P+++V +T L K ++AVTG++GK++ + + S Sbjct: 75 DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------S 128 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203 Q T T ++F +N++ P ++ LS + T V V G+D LD + Sbjct: 129 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 176 Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + T +G HI++ T+ +AKM + L KE I+ D + +R Sbjct: 177 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGD--EPLLQER 232 Query: 260 AHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A + G + + + Q S+ D + P+ G + V NAL A Sbjct: 233 AKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNNALAA 291 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR 377 + I A + + R E++ T RG I D Y + +L Sbjct: 292 LLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVLAAFA 350 Query: 378 TI-TSGRIIVVFG 389 + T G+ I V G Sbjct: 351 AVPTKGQRIAVLG 363 >gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri VA-6] Length = 452 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIARTVSLTRPE---- 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 A NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [cyanobacterium UCYN-A] Length = 458 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 49/309 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++D+R IQ G +F+A+ G DGHLFI +AI +GA +++ A + S Sbjct: 29 IKVINTDTREIQKGDVFIALSGKNFDGHLFIREAIEKGASIVILEQ-------EALVNST 81 Query: 90 TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + +VV + K A+ K+ I+A+TG+ GK++ + G Q+ Sbjct: 82 YKVSHIVVGSALKAYQQIANWWRNKYKIPIIAITGSVGKTTTKELIAASLGMYG----QV 137 Query: 148 GPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKL 204 T +N + P + L+K Y +E L++ RL I+ Sbjct: 138 HKTYD----NYNNEIGVPRTLLKLSKHHDY--------AVIEMGMRDLEEIRLLTKIIQP 185 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI +++A AK L E + +S AI+ DD + R Sbjct: 186 TIGIITNIGTAHIGRLGSKEAIAQAKCELLSE-MSLDSIAILNNDDELLMKTAMRIWKG- 243 Query: 265 CRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + ++ G GK I+ + T+ VEG +F PL G N L A Sbjct: 244 -KTITYGLNKGDIIGKLINDR-----------TLRVEG--LNFPLPLSGRHNAINYLAAL 289 Query: 320 GLCIAIGID 328 + ++ +D Sbjct: 290 AVTKSLNLD 298 >gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus lactolyticus ATCC 51172] Length = 467 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 39/312 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI VS+DSR I G +++ +VG DG +FI + +GAEA ++ + + T+ Sbjct: 34 KIKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKECEDKGAEAFIIDDPTKI---NKTV-- 88 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 + P + V +T+K L A+ + ++ +TG++GK++ + +I + G Sbjct: 89 SIPYVRVADTKKALQDLATAYRKELSCKVIGITGSNGKTTTKDLLYKILSEKYKTQKTCG 148 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +IG T+ S D + A+ L + +S+ +S + H Sbjct: 149 NLNNEIGVPKTVLSLDPDTEV----------AIIELGTDNFGDISL--TSRMVKPH---- 192 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRA 260 I +I TN+G H+ +T+ AK+ + E + ++ IY DD KE + Sbjct: 193 IAMI----TNIGDAHLHNLKTRSGILKAKLEILEGM--EDDGIFIYNIDDPTMKEEIP-T 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ +VLS G K K V + S E F+ PL GE +YNA Sbjct: 246 YDIKQKVLSFGRSDK-ADFKIVFEKSPTSIIRFSHENDHFE--VPLMGEHNIYNAAAVVM 302 Query: 321 LCIAIGIDSALV 332 + +G++ ++ Sbjct: 303 ISEMLGLNKEMI 314 >gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 40/375 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS DSR ++ G +FVAI G + DGH FI A GA +VS Y+ Q + ++ Sbjct: 31 VTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAFDNGAAGALVSRDYAPQ---VPLAAD 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+ VD+ L + I AVTG+ GK++ ++ + S GP Sbjct: 88 EPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKTTTKEMLRVMLGES-------GP 140 Query: 150 T-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +++ S+ +N + P+ LA+ + S GV + + + + +L ++ Sbjct: 141 THASVKSY--NNFMGV--PLSLAR-MPAASRFGVFEIGMNHAGEIVPLAKL--VRPHVAI 193 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T + HI++ ++ AK +FE L + AI+ AD+ + + + A RV+ Sbjct: 194 VTWVAPVHIEFFTSEAEIARAKAEIFEG-LEQGGAAILPADNPHFESLAAFARERSARVV 252 Query: 269 SVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G + + + ++ VT + + F PG NA+ A Sbjct: 253 PFGLSSEAEARLVSFERT---EEGSVVTADIFDQRVTFALAAPGRHLAQNAVAALAGVSL 309 Query: 325 IGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM-----ILK 374 +G + L + GR FE RG + +D ++ +N M +L Sbjct: 310 LGGNVEAAAAALARFEAPEGRGRSATFE----TPRGPVLVIDESYNANPASMHAALDVLG 365 Query: 375 NIRTITSGRIIVVFG 389 + R I V G Sbjct: 366 AVPPSRYARRIAVLG 380 >gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON] gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON] Length = 879 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 31/323 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I++VTG++GK++ + + + GL+ +G T+T + D + A A Sbjct: 482 IVSVTGSNGKTTTVRIIAHMLRTQGLN---VGMTTTGGIYINDECIMKGDTTGPASAQII 538 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234 LS + V +E + G+ + L G TN+ DH ID T + + K L Sbjct: 539 LSDKSVEAAVLETARGGIIRSGLGYDLSDVGVITNITGDHLGIDGIHTLEDMLHVK-SLI 597 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----AIHNKQ 289 E + A++ ADDA S + +R C ++ + I ++ A++ K Sbjct: 598 VEAVKDNGYAVLNADDAISVQAARRVR---CNLIYFSFNQNNILIQHQIDNGRPAVYLKD 654 Query: 290 QVTISVEGKDFDFLFP---LPGEFQ---VYN-----ALVAAGLCIAIGI---DSALVLEH 335 + +G++ + +P ++ YN A VAAG I + + + AL + Sbjct: 655 DYIVLFDGENIYNVIAVDEIPATWEGKLTYNIENSMAAVAAGYGIKVPVSVMEKALRTFY 714 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 + L PGRF N R R+ VDYAH S + ++ ++ + R+I V G GDR Sbjct: 715 SDSLQN-PGRFNIF--NVRDFRVIVDYAHNVESYKSVISALKQMNPARLIGVIGAPGDRR 771 Query: 396 QGKRPIMGKIALDLADIAIVTDD 418 MG+IA D I+ +D Sbjct: 772 DEDIIEMGRIAGYGFDRIIIKED 794 >gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 471 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 136/335 (40%), Gaps = 57/335 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R I +F+A+ G DGH FI A GA A++VS + + Sbjct: 30 IQGVSTDTRQINPDDLFIALSGPNFDGHKFIDTAAQGGAVAVIVSR---------KVDTE 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++V +T++ L + + +A+TG+SGK++V V I R G Sbjct: 81 LAQILVSDTKEALGRLGQAIKREVAPKTVAITGSSGKTTVKEMVAAILSRRG------KV 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +T +F +N + P + L + V + A+ G + + +K + Sbjct: 135 LATKGNF--NNDIGVPLTL-----LRLEADHEFAVVELGANHLGEIAYTTELVKPDVATI 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N H++ + AK +F+ L K+ AI AD + Sbjct: 188 VNAAAAHLEGFGSLLGVARAKSEIFKG-LGKDGLAIFNADSQF----------------Y 230 Query: 270 VGYQGKFIHLK------KVCAIHNKQQVTISVEGKDFDFL-----------FPLPGEFQV 312 + GK+ HL+ K A + Q V + + G DFL PLPG V Sbjct: 231 AFWHGKYEHLRNQAFSTKDEADYYAQDVVLGLNGCA-DFLMVTPLGKVSISLPLPGLHNV 289 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 NALV+A L I +G + V L+ + V GR + Sbjct: 290 SNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQ 324 >gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum 5521] gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 96/406 (23%), Positives = 166/406 (40%), Gaps = 55/406 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSN 89 N++S+D+R I+ +FVA+ G +G+ + AI +GA ++V + +D ++S Sbjct: 26 NKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKGASVVIVDEIKFEKED----LKSK 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V +T+ L A K ++ +TG++GK+S + ++F G Sbjct: 82 GTVIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTSTKDLI---------AAFLSGK 132 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL--IA 206 + +N + P I+ V + + S+ G + + L GI L IA Sbjct: 133 YKVFKTQGNFNNEIGLPLMIF-----ELNKDYDVAVLEMGTSNFG-EINTLAGIALPDIA 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + TN+G HI+Y +T++ KM + + +S +I ++ K V H Sbjct: 187 -AITNVGVAHIEYLKTRENILKEKMSI-SDFFKDDSCLVINCENDMLKTVKDEDH-KNIN 243 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALV 317 + GY + K + ++ E FD F + GE V NAL Sbjct: 244 IQRTGYDKSYNLYAK--------NIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNAL- 294 Query: 318 AAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 L I I D L E +EK R EF+ N + I Y +S++ + Sbjct: 295 ---LGIQISKDLGLKFEEMEKGLDNFKATSMRLEFIKHN-KFTIINDSYNANPDSMKAAI 350 Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416 +++ T R I V G GD +G+ A ADI + T Sbjct: 351 NVLKSYTGDRKIAVLGTMGELGDYANIAHKEVGEFAKGKADILLTT 396 >gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis L2-32] gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis L2-32] Length = 517 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 102/470 (21%), Positives = 200/470 (42%), Gaps = 42/470 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + ++ D+R ++ G F+ G + +L QG + +++ S DFS Sbjct: 38 DEPFSAITYDTRKVEPG-TFLCCKGRFKAEYL-------QGIDERGLAAYVSENDFSDAT 89 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQRSGLSS 144 ++ P L+VD+ RK ++L ++ YG+ P++ L V G + + +++ Q +G S Sbjct: 90 QA--PGLIVDDVRKAMALLSAEFYGR-PQDQLKVVGITGTKGKTTTAYLTQ-AMLNGCSG 145 Query: 145 FQIGPTSTISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + S++ + ++ LTTP + + + G+ ++ +E SS R+ Sbjct: 146 GKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYLVMEVSSQAYKVDRV 205 Query: 200 DGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G+ +F N+ DHI H T + Y + K ++ + ++ AD A + + Sbjct: 206 FGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNC----RALVLGADCARADLIR 261 Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315 + A +A V + G + A + + +I ++G + L G+F N Sbjct: 262 QDARHASVPVTTFALGGDSTADVMAAPANDDHSRFSIVIDGASIGELSLTLDGDFNYANT 321 Query: 316 LVAAGLCIAIGID--SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 A + A G D SA + L ++ V GR E VDYAH S+ Sbjct: 322 AAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIVDYAHNYASVTA 381 Query: 372 ILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428 +L + I ++ G G++ +R + A D D ++T ++ E E++ Sbjct: 382 LLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHLVLTFEDTDDEPVEQV 441 Query: 429 RAEIIHGI--PGFIEKG--NRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 A++ + P K +R EA+ T + K ++++ GKG+E Sbjct: 442 CADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILIIGKGNE 491 >gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio alginolyticus 40B] Length = 454 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +FVA+VG + D H F QA+ GA A++V + N Sbjct: 24 IDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVDAGAGALLVEKRLDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T+ L FAS ++ +A+TG+ GK++V V I Q G F G Sbjct: 75 VPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133 >gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus warneri L37603] Length = 453 Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 86/379 (22%), Positives = 163/379 (43%), Gaps = 49/379 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + I V+ DSR I+ +F+ G DGH F+ QA+ GA A ++ +D S Sbjct: 20 QYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGAGA-----SFYQKDVS 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 PI+ VD+T + L A ++AVTG++GK++ ++ + + Sbjct: 75 LPKDIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIECVLN----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F + T +N + P L+ L T +S+ E G H ++ + Sbjct: 131 EFNVKKTQG----NYNNEIGMP--------LTILDLDKNTDISILEMGMSGF--HEIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L K + IY D+ K + Sbjct: 177 STIAEPDIAVITNIGESHMQDLGSREGIAQAKSEITIGL--KSNGTFIYDGDEPLLKPHV 234 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEF 310 ++ A C +S+G QG + VC+++++ + EG F ++ P+ G Sbjct: 235 EQIKEAKC--ISIGLEQGNSL----VCSVNDQ----VETEGIAFTINHQQEYELPILGIH 284 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 + NA +A + +G+ + +++++ + R E T + I Y + S++ Sbjct: 285 NMKNAAIAIAVGQELGLSYKTIQHNIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMK 344 Query: 371 MILKNIRTITSGRIIVVFG 389 + + + +GR I+V G Sbjct: 345 AAIDTLSNM-NGRKIIVLG 362 >gi|302518532|ref|ZP_07270874.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB78] gi|302427427|gb|EFK99242.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Streptomyces sp. SPB78] Length = 144 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 11/131 (8%) Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 +L+++R +T GR+ VV GCGG RD KR MG A LAD A++T DNPRSEDP I A Sbjct: 1 MLRSLRRVTEGRVHVVLGCGGARDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAA 60 Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQ------DVLVVAGKGHETVHIVTNGEKKM 482 ++ G +P E+G+ + A + D +++AGKGHE V NG + Sbjct: 61 MLAGAAEVP-VHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV-NGVVRP 118 Query: 483 SVDCDIIREIL 493 D ++++E + Sbjct: 119 FDDREVLKEAI 129 >gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis ATCC 12228] gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis RP62A] gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU045] Length = 451 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 79/369 (21%), Positives = 162/369 (43%), Gaps = 36/369 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ IN VS DSR I G +F+ G DGH FI QA+ GA A+ +S ++ + Sbjct: 23 KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKHSE 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + PI+ V++T L A ++AVTG++GK++ ++ + + F+ Sbjct: 78 GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +N + P L+ L T +S+ E G H+++ + I Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260 A TN+G H+ +++ AK + L K + IY D+ K + + Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA +++S+G + + + N + + ++ K+ + P+ G + NA +A Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G++ ++ ++ + + R E +++ I Y + S++ + + ++ Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVM 352 Query: 381 SGRIIVVFG 389 GR I++ Sbjct: 353 KGRKILILA 361 >gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfotomaculum acetoxidans DSM 771] Length = 457 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 37/338 (10%) Query: 24 QWRERKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 Q ++ +NEVSS D+R ++ G +F A+ G D + F+ Q A+ A A+VVS S Sbjct: 17 QVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQGKAKQAAAVVVSRVLS-- 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 + S T +L V ++ K L A Y + NI + VTG++GK+S + + Sbjct: 75 ----AVNSGTAVLQVQDSLKALQALAR--YNRQLFNIPVIGVTGSNGKTSTKDMIASV-- 126 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + + +S +N + P + LS SS V + G Sbjct: 127 ------LGVRYKTLKTSGNYNNEIGLPLTL-----LSMDSSHQTAVVEMAMRGRGEIDFL 175 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + T +G H++ +++ AK + + + P + A++ + + ++++ Sbjct: 176 CQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGP-QGFALLSGNSSLTRQL-- 232 Query: 259 RAHNAGCRVLSVGYQGKFIHLK-KVCAIH---NKQQVTISVEGKDFDFLFPLPGEFQVYN 314 AG V + G L + C I N + T+ D P+PG + N Sbjct: 233 ----AGLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIIN 288 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +L A G+ + +G+ + L ++ + R E + N Sbjct: 289 SLAAVGVGLELGLSLPEIKAGLAEVVLTGMRMEIIKIN 326 >gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Pasteurella dagmatis ATCC 43325] Length = 461 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 80/327 (24%), Positives = 133/327 (40%), Gaps = 36/327 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +S+D+R + +F A+ G D H ++ +A+AQGA A+VV S D Sbjct: 24 EVENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVAQGAVALVVQKINSHLD------- 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV++T+ L A + ++A+TG+SGK++V I Q+S ++S Sbjct: 77 -VPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKTTVKEMTASILQKSAVNS---- 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T + +N + P + L + + A+ G + K Sbjct: 132 DTVLFTEGNFNNDIGVPLTL-----LRLTPEHQFAVIELGANHQGEIAYTTSLAKPDVAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H++ + + AK ++ LP AII + YS +K A G R + Sbjct: 187 VNNVAAAHLEGFGSIEGVAQAKGEIYRG-LPASGVAIINKEHNYS---IKWAQEIGERAI 242 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQVYNALVAA 319 ++ + A V + G +F+ P LP GE V NAL A Sbjct: 243 ------QYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNALAAT 296 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346 L + +G V + LE V GR Sbjct: 297 ALAMNVGASLTQVKKGLEMRSQVKGRL 323 >gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str. C58] Length = 477 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 26/368 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G++ DGH + A+A GA +VV+ A A R Sbjct: 26 ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEA----KLPALGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L A + I+AVTG+ GK++ ++Q SG Sbjct: 82 VPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + ++SF +N P + LA+ + + GV + + S G + + ++ Sbjct: 137 -AAVASF--NNHWGVP--LTLAR-MPADTEFGVFEIGMNHS--GEIRPLVKMVRPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T + H+ + + AK +FE + S I+ D+A +++ + A AG +L Sbjct: 189 TTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGS-VILNRDNAQFEQLEEAAQEAGIEHIL 247 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G K L + + + G+ + +PG NA+ G G Sbjct: 248 TFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVLGAVAVTGA 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIRTITS 381 + LE L L V GR + GG + +D ++ +N M +L T Sbjct: 308 NLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGH 367 Query: 382 GRIIVVFG 389 GR + V G Sbjct: 368 GRRVAVLG 375 >gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 466 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 60/311 (19%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRSNT 90 +++D+R+++ G IF+A+ G DGH + AI +GA A++ + Y LQD Sbjct: 33 ITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRDQGYHLQDI-------- 84 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L VD+T + A + ++AVTG++GK++ + + G Sbjct: 85 PQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELIAAVLSTQG--------- 135 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206 + + + A N + I + K L L S + +E + G Q L + IA Sbjct: 136 NILKTQANYN-----NEIGVPKTLLELDSNH-DYAVIEMAMRGSGQIAL--LTQIARPTI 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVM 257 G TN+G HI ++ A AK L + +P S AI+ D+ + E + Sbjct: 188 GVITNVGTAHIGLLGSEDAIAKAKCELLAQ-MPDTSMAILNHDNQRLMDTAATVWQGETL 246 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 N G QGK I L ++ V+G F PLPGE N L Sbjct: 247 TFGLNGG------DVQGKLIDLFRLM-----------VDG--ITFPLPLPGEHNALNYLA 287 Query: 318 AAGLCIAIGID 328 A + + ID Sbjct: 288 ALAVAKHLQID 298 >gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius UCC118] Length = 456 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 44/377 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W + I V DSR I++G +F+ +V + DGH ++ AI GA A + +D S Sbjct: 19 EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I + +L V +T L K ++A+TG++GK++ + Sbjct: 73 ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 + Q T ++F +N + P ++ LS + T V V G+D++ +LD + Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +A T +G HI++ T+ +AKM + L ++ +I D+ + Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCA---IHNKQQVTISV-EGKDFDFLFPLPGEFQVYN 314 +A VL+ G + +CA + + + + V + DF + G + V+N Sbjct: 231 KAKEVSQEVLTFGS----LDNNDMCAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 AL A + I + + L + R E++ + G +I D Y +++ +L Sbjct: 287 ALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVL 345 Query: 374 KNIRTI-TSGRIIVVFG 389 + T G+ I+V G Sbjct: 346 YAFEQVPTEGKRIIVLG 362 >gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Pantoea ananatis AJ13355] Length = 452 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V++D+R + AG +FVAIVG + D H F AIA+G +A++VS + + Sbjct: 24 LNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVSKHLPV---------S 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P +VV +TR A+ + + ++A+TG+SGK+SV I ++ G Sbjct: 75 VPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTASILRQCG 126 >gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces lividans TK24] gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)] gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24] Length = 471 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 101/234 (43%), Gaps = 36/234 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA VG + DGH F + + GA A++ S + P Sbjct: 31 VVRDSREAGPGSLFVAFVGERADGHDFAARVVEAGAVAVLGSRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+ + L A + + ++A+TG++GK+S + Q+ +R + F G Sbjct: 80 IVVDDVQAALGALARHVVRRLGTTLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPG---- 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR----LDGIKLIAG 207 + +N + P L+ L++ T V E + G+ R L K+ G Sbjct: 136 ----SMNNEVGLP--------LTALTATDETKFLVLEMGARGIGHIRYLTELTPPKI--G 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259 + N+G HI ++ AK L E L P E AI+ ADD + + R Sbjct: 182 AVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEGGAAILNADDPLVRAMASR 235 >gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi] gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 452 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T S+F D + PI L + L++ V + + A+ G + + A Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ED1a] gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ED1a] Length = 452 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J] gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D] gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J] gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D] Length = 855 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 91/393 (23%), Positives = 166/393 (42%), Gaps = 46/393 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + + SGL ++G T T + Q R+ Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGL---RMGMTGTDGVYIQGQRI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ +Y Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNY 574 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-------EVMKRAHNAGCRVLSV-G 271 T + K + + + P+ + AD ++ V AH+ G L++ Sbjct: 575 ISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLALHR 634 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326 QGK F+ ++ A + I++ D G FQV NA+ + A+G Sbjct: 635 AQGKRVVFVDGPEIVAAEGANETRIALA----DIPLTRNGTIGFQVENAMSSIAAAWALG 690 Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 ID ++ L PGRF + +G + DY H ++++ + + T+ + Sbjct: 691 IDWTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQ 748 Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 R++V+ G G RD+ R I+G + D+ + D R ++ A + G+ G Sbjct: 749 RRMVVISGAGDRRDEDIRKQTQILGGV---FDDVVLYEDQCQRGRADGEVLALLREGLQG 805 Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464 + +R++ IR TA+ L D+ ++ Sbjct: 806 -ASRTSRVDEIRGEFLAIDTALGRLQPGDLCLI 837 >gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Staphylococcus capitis SK14] Length = 451 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 86/371 (23%), Positives = 161/371 (43%), Gaps = 37/371 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ IN V+ DSR I+ +F+ G DGH F+ QA+ GA A S + + S Sbjct: 20 QYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGAGA---SFSEKGTELS 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I PI+ V++T K L A ++AVTG++GK++ ++ + + Sbjct: 77 EDIEG--PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDMIESVLT----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L KE+ IY D+ K + Sbjct: 177 SSIAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KENGTFIYDGDEPLLKPHL 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316 ++ + A R++SVG G L VC + + + I+ D + F P+ G + NA Sbjct: 235 EQLNKA--RLISVGL-GNSNTL--VCHVDDIETEGIAFTINDKESFTLPILGTHNMKNAT 289 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 +A + +G+ + +++ + + R E T + I Y + S++ + + Sbjct: 290 IAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTL 349 Query: 377 RTITSGRIIVV 387 ++ +I+++ Sbjct: 350 SSMEGRKILIL 360 >gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI39] gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI39] Length = 452 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU144] Length = 451 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/369 (21%), Positives = 162/369 (43%), Gaps = 36/369 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ IN VS DSR I G +F+ G DGH FI QA+ GA A+ +S ++ + Sbjct: 23 KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKHSE 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + PI+ V++T L A ++AVTG++GK++ ++ + + F+ Sbjct: 78 GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +N + P L+ L T +S+ E G H+++ + I Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260 A TN+G H+ +++ AK + L K + IY D+ K + + Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA +++S+G + + + N + + ++ K+ + P+ G + NA +A Sbjct: 238 KNA--KLISIGLNSDSTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + +G++ ++ ++ + + R E +++ I Y + S++ + + ++ Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVM 352 Query: 381 SGRIIVVFG 389 GR I++ Sbjct: 353 KGRKILILA 361 >gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus DSM 2380] gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter carbinolicus DSM 2380] Length = 463 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 33/365 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+DSR ++AG +FV + G + DGH FI QA+ GA A + + Sbjct: 25 VTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAVACLSEEVIA--------GLP 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +T + L A+ + ++AVTG+SGK++ + +G+ + + Sbjct: 77 VPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEML------AGILALRGEG 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 T +F +N + P ++ +A + + V + + A + RL I + G Sbjct: 131 LKTEGNF--NNLIGLPHTLFRLEADHHWA---VLELGMSARG---EIARLAEISRPDIGV 182 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H++ Q AK LF LP A+I DD V++ G R L Sbjct: 183 ITNVGPAHLETLHNLQGVARAKGELFAA-LPAGGTAVINGDD---PRVLQLPVANGVRRL 238 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + + + + G+ + +PG + V+NAL AA A+ + Sbjct: 239 IYGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHALKV 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTIT-SGRI 384 A ++E LE GR V + G + D+ + +N L + L + + SGR Sbjct: 299 GGAQIVEGLEAFRSCAGRMA-VAELASGATLLEDF-YNANPLAVKAALSALDEMPGSGRR 356 Query: 385 IVVFG 389 I V G Sbjct: 357 IAVLG 361 >gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 17 QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 71 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 290 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 325 >gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 468 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 31 QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 84 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 85 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 140 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 141 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 191 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 192 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 249 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 250 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 303 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 304 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 339 >gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sviceus ATCC 29083] Length = 466 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 25/224 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A VG + DGH + QA+ GA A++ + P +VV Sbjct: 34 DSRQVKDGSLFAAFVGERVDGHDYADQAVRAGAVAVLAQRPVGV-----------PAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ + L A + + ++A+TG++GK+S + Q+ +R + F G + Sbjct: 83 EDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLRRKAPTVFTPGSLNNEIG 142 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 T +L + + ++G+ H+S + D G N+G Sbjct: 143 LPLTALTATEETRFL---VLEMGARGIGHIS----------YLTDLTPPKIGLVLNVGSA 189 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 HI ++ AK L E LP E AI+ ADD + + R Sbjct: 190 HIGEFGGREQIAQAKGELVEA-LPAEGAAILNADDPLVRAMASR 232 >gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia intermedia ATCC 29909] Length = 427 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 28/355 (7%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + AG +FVA+ G + DGH F A+A GA A++VS + P LVV Sbjct: 4 DTRKVTAGCLFVALKGERFDGHDFAEDAVAAGAGALLVSK---------RLLVGAPQLVV 54 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +TR L FA+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 55 KDTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAG------N 108 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F D + P+ L L + + A+ G + D + + NL Sbjct: 109 FNNDIGV----PLTL---LRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAA 161 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQG 274 H++ + AK +F LP AII AD + HN S G + Sbjct: 162 HLEGFGSLAGVAKAKGEIFAG-LPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRGAED 220 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + V T+ PLPG + NAL A L +++G D A V + Sbjct: 221 IDFYASDVRITPQATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQ 280 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387 L +L VPGR + ++ G++ +D ++ +N S+ + + + R++VV Sbjct: 281 GLAQLQAVPGRLFPIQLSA--GKLLLDDSYNANVGSMTAAAQVLAEMPGYRVLVV 333 >gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Xanthomonas gardneri ATCC 19865] Length = 497 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 53/305 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V +D+R + G ++VA+ G + DGH F A+AQGA ++V L S Sbjct: 24 IDAVGNDTRTLANGSLYVALRGERFDGHDFAADAVAQGASGLLVDRL--LPALS------ 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V+NT L+ A+ + ++A+TG++GK+SV + + I + +G G Sbjct: 76 VPQVLVENTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLSILEEAGRVD---GT 132 Query: 150 TSTISSFAQDNRLTTP-----SP------IYLAKA-----LSYLSSQGVTHVSVEASSHG 193 T + ++N + P +P IY A ++YL+ HV++ + Sbjct: 133 TVYANPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDIAYLTDIAQPHVALVNNIAP 192 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 RL GS + R T+ A + A LP + A+I ADDA+ Sbjct: 193 AHLERL-------GSLLGVAR-------TKSAIYAA--------LPADGVAVINADDAFG 230 Query: 254 KEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGE 309 ++ H G RVL G Q + + + Q T+ + PLPG Sbjct: 231 AWFEQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTPQGEAQIALPLPGR 290 Query: 310 FQVYN 314 V N Sbjct: 291 HNVLN 295 >gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis Bt407] gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 17 QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 71 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 127 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 178 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 235 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 236 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 290 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 325 >gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum ATCC 13032] gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 486 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 33/289 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+ +T +AYF ++F++ + +P ++ +D ++ E+ +R+ G + Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248 Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G +V A + + TI+++G++ + +PG+ V N Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373 A +G D ++E L V RFEF G G IY DYAH + +L Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368 Query: 374 KNIRT----ITSGRIIVVFG--CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-E 426 RT GR+IV F + ++ G AL LAD A+V + E P + Sbjct: 369 SAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAG--ALSLADAAVVLEIYGAREQPVD 426 Query: 427 KIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 + +EII IP E R A E+ D+++ G G T+ Sbjct: 427 GVSSEIITDAMTIPVVYEPNFSAVPERIA-EIAGPNDIVLTMGAGSVTM 474 >gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella denitrificans ATCC 33394] gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella denitrificans ATCC 33394] Length = 445 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 40/263 (15%) Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 L + P+ I+A+TG++GK++ S V +C + GL + G T A R P+ + Sbjct: 102 LLSRQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAGNIGTPVLEAWLARKGKPADV 161 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 ++ +E SS L+ L + A + N+ DH+D + Y Sbjct: 162 WV----------------LELSSFQLETTPL--LDADAAACLNISEDHLDRYDDLLDYAR 203 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA 284 AK +F ++ ++ ADDA+ + MKR +V Y Q + H + Sbjct: 204 AKDMIFN----GKAVQVLNADDAFCR-AMKRDGR------TVHYFSLQQPQDYHWQAGAG 252 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + Q+V + + PL G + N L A LC +IG+ +L H++ +P Sbjct: 253 SLHHQEVLLMPQTD-----IPLQGSHNMANVLAALALCESIGLPRDRLLAHVKTFKGLPH 307 Query: 345 RFEFVGTNSRGGRIYVDYAHTSN 367 R E VG + G ++D + +N Sbjct: 308 RVEKVG--EKNGITFIDDSKGTN 328 >gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis SK135] gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis VCU028] Length = 451 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/327 (22%), Positives = 144/327 (44%), Gaps = 35/327 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ IN VS DSR I G +F+ G DGH FI QA+ GA A+ +S ++ + Sbjct: 23 KKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENKYSE 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + PI+ V++T L A ++AVTG++GK++ ++ + + F+ Sbjct: 78 GNQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFK 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +N + P L+ L T +S+ E G H+++ + I Sbjct: 134 VKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSHI 179 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260 A TN+G H+ +++ AK + L K + IY D+ K + + Sbjct: 180 AQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVNQV 237 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA +++S+G + + + N + + ++ K+ + P+ G + NA +A Sbjct: 238 KNA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +G++ ++ ++ + + R E Sbjct: 294 IGHELGLNETIIQNNIHNVQLTAMRME 320 >gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 442 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 56/376 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + + VS DSR +++G +FVA+V + DGH ++ QA+ +GA A++V + Sbjct: 17 QIDSKIVTGVSFDSRKVKSGDLFVALVA-ENDGHDYVQQALTKGATAVLVDDRHQ----- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 I S P ++V +T L+L Y +H N ++A+TG++GK++ S Sbjct: 71 --IDSKIPAIIVSDT--LLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA------SA 120 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + Q T +F +N + P L+ L+ T V V G+D RL Sbjct: 121 IMGSQYKTFKTPENF--NNEIGVP--------LTLLTMPDDTEVLV--VELGMD--RLGQ 166 Query: 202 IKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + ++ T +G HI++ +T++ AK+ + + L + + I Y + + Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLLTN 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +K+ V + G K I+ I Q F PL G + + N Sbjct: 227 AQVKQ------NVQTFGQDIKDINSSSSKTIFTYQNTR---------FAIPLLGRYNIMN 271 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 AL A I + I+ E L+ + R E + T S G + D Y ++ +L Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQL-TTSHGVNLISDVYNSNPTAVAAVL 330 Query: 374 KNIRTITSGRIIVVFG 389 ++ I + VV G Sbjct: 331 ATLKIIPATHKYVVLG 346 >gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus viridans ATCC 11563] Length = 466 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 54/407 (13%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 F R +I+ V DSR I G +FV + G DGH +I +AI GA V++ +S Sbjct: 18 FTSTARFTEIDSVEFDSRLITPGALFVPLKG-ATDGHSYIDKAIENGA----VAALWSND 72 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA-------SFV 133 A + PI+ V++T + FA G ++ +TG+SGK++ S Sbjct: 73 PNEAPV--GFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTA 130 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + +G + IG TI +D + + A +S+LS V V Sbjct: 131 LKVHKTNGNYNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLSKLAEPDVVV----- 185 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 T +G +HI++ +++ AK+ + + L KE IY D Sbjct: 186 ----------------ITMIGENHIEFLGSRENIAKAKLEILDGL--KEEGTFIYPGDE- 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 V + + L++G + Q + + PL G + V Sbjct: 227 PLIVDQMPTDLKQSTLTIGLNDDHDIFAFDVMMDQFQSTFYTNLSPELKMEIPLSGGYNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVD-YAHTSNS 368 NAL A G+ + G+ V +L + + P R G+ RG +I D Y + ++ Sbjct: 287 QNALYALGVAYSFGLSMEQVRPNLAEFSITPDR----GSWERGILDTQILNDTYNASPSA 342 Query: 369 LEMILKNIRTITS---GRIIVVFG----CGGDRDQGKRPIMGKIALD 408 ++ +++N I S + I+V G G D+ R I I L+ Sbjct: 343 MKAVIRNFSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIGLN 389 >gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ochrobactrum intermedium LMG 3301] Length = 476 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 160/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F AI G + DGH F+ A+A GA IVV+ + L F S Sbjct: 27 ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAAGAGLIVVAE-HRLPAFG---NSK 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L+ + I+AVTG+ GK++ ++ + G Sbjct: 83 VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVH----- 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++++SF +N P+ LA+ + + GV + + + H + + ++ Sbjct: 138 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--NHHDEIRPLVKMVRPHVALI 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T + H+ + + AK +FE ++P A++ DD K++ + A AG ++ Sbjct: 190 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFKQLEELAEKAGVEHIV 248 Query: 269 SVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G Y+ + + L C+ +T+ + +PG V N L G Sbjct: 249 TFGENARSDYRLREVKLHPTCSC-----MTVKAGTHEAAVKVGMPGRHIVQNMLAVLGAA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 304 DLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHST 363 Query: 376 IRTITSGRIIVVFG 389 + GR I V G Sbjct: 364 APEGSRGRRIAVLG 377 >gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 21-1] Length = 452 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILNQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase protein [Thermomicrobium roseum DSM 5159] Length = 466 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 103/405 (25%), Positives = 168/405 (41%), Gaps = 64/405 (15%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V DSR ++ G +FVA+ G + DGH F+ A+ +GA +V + ++ + + I Sbjct: 26 RRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVRRGAAGALVEARWAEELANLGI---- 81 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP 149 P++VVD+T L AS + AVTG+ GK+S + + QR FQ+ Sbjct: 82 PLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTSTKEAIASVLAQR-----FQV-- 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 + +SF D + AL L+ T V V + +RL ++ + Sbjct: 135 VRSRASFNTD----------VGIALDLLTIDPNTDVVVLEFG---EAYRLGEVRELCALA 181 Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 G TN+ H+ T + + L E LP + A++ DD + +M A Sbjct: 182 EPRIGVVTNVSYAHLARMGTIERIAQSIAELPES-LPADGVAVLNGDD-FRVRLM--AER 237 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVY 313 RVL G L C + ++ + ++G FD + PL G+ V+ Sbjct: 238 TPARVLLYG-------LSPDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVH 290 Query: 314 NALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLE 370 +AL A IA+G + L LE L H + + G +D Y + S Sbjct: 291 HALAA----IAVGYELGLTLEEMLPGFHDPRVQVRLLTVPGINGATLLDDTYNASPASCM 346 Query: 371 MILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLAD 411 L + I + R I VFG G ++G R ++G+ A + D Sbjct: 347 AALSLLAEIPAQRRIAVFGDMYELGWYEEEGHR-MVGRRAAAVVD 390 >gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2080] Length = 456 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 28/321 (8%) Query: 29 KINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 K+ EVS DSR ++ G +FVAI G K DGH ++ A+ +GA A +V S Sbjct: 24 KLLEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVS------- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 S P L+V ++ L F + + ++ +TG++GK++ + + +I R+G Sbjct: 77 --SALPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAG---- 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKL 204 + + Q+N L P L+ L++ V + D RL + + Sbjct: 131 ----SVVATKGNQNNELGVP------LTLADLNNDTEYAVLELGAGKPGDIARLCEMARP 180 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 N+ H+ + A K L ++ LP + A+I ADD + RA Sbjct: 181 NIAILLNVAPAHLANFGSLDAISKTKGALLDD-LPADGLAVINADDPRVFDWHVRASPTR 239 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 C + + + + + + +D + +PG +YNAL AA + A Sbjct: 240 CLTFGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADA 299 Query: 325 IGIDSALVLEHLEKLHVVPGR 345 +GI + + E L + PGR Sbjct: 300 LGISAITIREGLAAVKPAPGR 320 >gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 463 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 28/348 (8%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 KIN +S DSR I + +F+AI G K +G FI ++I GA A++ + ++ Sbjct: 23 KINSISIDSRKIFNKKNCLFIAIKGKKFNGECFIKESIKNGAVAVINARKVNI------- 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P L+V NT L + + I+A+TG+SGK+SV + I L++F Sbjct: 76 --NIPHLIVKNTIISLLRLSKWIRENSKAKIIAITGSSGKTSVKEIIFNI-----LNTFS 128 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +T +F +N + P + L + + V + G + + IK Sbjct: 129 -NTIATKKNF--NNNIGVPLTL-----LRLNKNHNFAIIEVGGNKFGEIKTSSNLIKPDI 180 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRAHNAG 264 N+ H+ ++ AK +F + K++ I+ Y + + + K N Sbjct: 181 ALINNISESHLSGFKSINGVSKAKEEIFSGIQGKKNGIIVLNYNSNDWKEWKKKLKDNLV 240 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + + K+ +LK + + + +IS + ++ + PL G ++NA+ A + Sbjct: 241 FWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNAMAAIAISFL 300 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 +G + L+K + R + N +I +D ++ +N MI Sbjct: 301 VGASMESIKYGLKKSYPFKRRLFPIFLNK--NKIIIDDSYNANVGSMI 346 >gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 294 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfitobacterium hafniense DCB-2] Length = 482 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 98/475 (20%), Positives = 181/475 (38%), Gaps = 76/475 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG IF A+VG + DGH +I A +GA ++ + ++ V Sbjct: 29 DSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGKALIRV 88 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ + A + ++A+TG++GK++ V + + + Sbjct: 89 ESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRTHKNL-------- 140 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-------GS 208 Q+N L P I A ++ + +E GL Q I + G Sbjct: 141 ENQNNELGLPMTILKA-------TENTEVLILEMGMRGLGQ-----IAFLCDIACPDIGV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H++ +Q+A AK L E L P+ A++ +D +S +K+A + R Sbjct: 189 ITNIGTTHMELLGSQEAIARAKWELIEAL-PETGSAVLNGEDEWS---VKQAEHDSHRTF 244 Query: 269 SVGYQGKF------------------------IHLKKVCAIHNKQQVTISVEGKDFDFLF 304 G +G+F H + ++Q SV Sbjct: 245 FYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSV-----TVRL 299 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 PLPGE V +AL A + + + + L + + R E GG + + Sbjct: 300 PLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLEL--QPGPGGSTLISDVY 357 Query: 365 TSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-------- 414 +N S++ L+ ++ + + G + Q R ++ +AD+ I Sbjct: 358 NANPTSMKASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITVGP 417 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468 + ++ R + + + IH P E+ I+ R + LN+ VL+ A +G Sbjct: 418 LAEEIARGALEKGLSPQRIHSFP---EREGAIKKARELLAGLNQGTWVLIKASRG 469 >gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus buchneri ATCC 11577] Length = 460 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N V D+R + G +F+ + G DGH FI AI GA A + +S D + + Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSGT-HDGHDFIENAIKGGAVATLWAS-----DHTDRL 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ + K ++AVTG++GK++ + + S + Sbjct: 79 PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204 T T +F +N + P Y Q ++ G+D+ +LD + KL Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + T +G HI++ T+ +AKM + L K IY D +++RA Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317 ++ G H V A Q S E D P+ G++ V NAL Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375 A + I +++ L + R E++ T ++G +I D ++ + + E++ Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351 Query: 376 IRTITSGRIIVVFG 389 +T GR IVV G Sbjct: 352 SQTDVMGRRIVVLG 365 >gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 423 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T S+F D + PI L + L++ V + + A+ G + + A Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus G9842] gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis IBL 200] Length = 458 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 294 SMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK115] Length = 456 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 92/410 (22%), Positives = 162/410 (39%), Gaps = 63/410 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A V AY Sbjct: 20 QFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + +IG T+ +D I L +L G H+ E + Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHLLSELA- 174 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 175 -----------KPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG-LRKDGLLIVPAD-- 220 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +++ A C+++ G C K ++ + P+ G++ Sbjct: 221 ---KIVNEFLPADCKLVRFGPDADIFL---TCLEERKDSLSFECNFLEQRIDLPVTGKYN 274 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 NA++A+ + G+ A + + +L + R E+ + G I D Y ++ Sbjct: 275 ATNAMIASYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMR 333 Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +IL+ TI + GR + V + + + G + L + IVTD Sbjct: 334 LILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda EIB202] gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Edwardsiella tarda FL6-60] Length = 458 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 83/331 (25%), Positives = 132/331 (39%), Gaps = 44/331 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + V++D+R + G +FVA+ G+ DGH F QA GA A++V+ +L Sbjct: 21 DSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQAREGGAGALLVNRRLAL------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P L+V +TR L + + + P ++A+TG+SGK+SV I G + Sbjct: 74 --DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKL 204 G +N + P + + + G HV A S L + Sbjct: 132 AGNL--------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH------ 177 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKE 255 + NL H++ + AK +F L P + AI+ AD + Sbjct: 178 -SALVNNLAAAHLEGFGSLSGVAQAKGEIFAGL-PPQGTAIVNADSNDWENWQHALTEQR 235 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 V + + AG G + V + T+ D L PLPG + NA Sbjct: 236 VWRFSPQAGA--------GVDFYASAVRSDAAGTHFTLHTPAGQCDVLLPLPGRHNIANA 287 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 L AA L +++G V + L L VPGR Sbjct: 288 LAAAALTMSVGATLTQVQQGLAGLQAVPGRL 318 >gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 3431] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii AB307-0294] gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013150] gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6013113] Length = 466 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q +A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G +H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ ++ AK ++ +LP AI+ D ++ E++ A Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+ + G G ++ V + ++ P GE V NA A Sbjct: 246 --KAHRISTFGVGGD-VYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +AIGI +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350 >gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 415 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T S+F D + PI L + L++ V + + A+ G + + A Sbjct: 131 --TASNFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UTI89] gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli APEC O1] gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli S88] gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli UTI89] gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli APEC O1] gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli S88] gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA] gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IHE3034] gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UM146] gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 110-3] gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 16-3] gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H252] gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H263] gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA206] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus m1293] Length = 458 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus atrophaeus 1942] Length = 455 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 47/371 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V++D+R ++ +F+ + G +GH F+ QA G A++ + + N Sbjct: 27 IQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENGVSAVLWNKS----------EPN 76 Query: 90 TP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P +++VD+T L + + ++ VTG++GK++ + + Q + F Sbjct: 77 PPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKDMLHAVLQ----TQF 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKL 204 ++ T +F +N + P L+ LS T V+V E G + +D + Sbjct: 133 RVHKTE--GNF--NNHIGLP--------LTVLSMPEDTEVAVLEMGMSG--KGEIDLLTR 178 Query: 205 IAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 +A TN+G H+ +++ AK+ + L K+ +IY D E + Sbjct: 179 LANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGL--KKDGILIYIGD----EPLLNK 232 Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + CR + G +G L+ V + S++G D F P+ G+ V NA+ A Sbjct: 233 RSYSCRTKTFGADEGNDYQLEDVKQTEDGTH--FSIKGIDKTFFIPVLGKHNVLNAIAAF 290 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 I GI + L L V R E + + S I Y + S++ ++ I ++ Sbjct: 291 AAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELIESM 350 Query: 380 TS-GRIIVVFG 389 G+ ++V G Sbjct: 351 EGYGKKMLVLG 361 >gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 468 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 165/405 (40%), Gaps = 54/405 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R + AG +FVA+ G DG F +A+ +GA A++V +A + + Sbjct: 31 ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145 LV ++T + A K ++A+TG++GK++ V S ++C+ + + Sbjct: 91 LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G T+ ++ T VE G+ Q I + Sbjct: 151 EVGLPLTLLGITPED----------------------TAAVVEIGMRGMGQ-----IAAL 183 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+ H++ + + AK L +P I+ ADD M+ Sbjct: 184 APITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVA-AMR 241 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G RV++ G + + + + + + ++ +G+ ++ PLPG V NAL Sbjct: 242 SSAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALA 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKN 375 A +G+ + L L R+E + G ++ Y + +S+ L+ Sbjct: 302 ALAAGFVLGMTPQEMQVGLTHLTAEKMRYEV---HQIGAWTLINDAYNASPSSMRASLET 358 Query: 376 IRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416 + GR I V G G ++ R + G+ A +L +VT Sbjct: 359 TAALYPGRRIAVLGDMLELGAAAEKAHRDV-GRRAAELGFAMVVT 402 >gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J1-208] Length = 418 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 64/357 (17%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +FV VGN DGH F+ QA GA A Q ++ P+++V++T L Sbjct: 2 LFVPFVGNVRDGHEFVNQAREMGAVATF------WQKDVPNPPTDFPVILVEDTLLALQE 55 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIGPTSTISSFA 157 A++ + ++A+TG++GK++ + I + + G + IG TI + Sbjct: 56 LAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMP 115 Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS----FTNLG 213 +D + + G+ H +H ++ + IA TN+G Sbjct: 116 EDTEVA-------------VLEMGMNH-----------RHEIEVLSKIAKPDIAIITNIG 151 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 HI+Y +++ AK+ + L P S +IY + + ++ N R L+ G Sbjct: 152 EAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEETLLLGNINGDFRQLTFG-- 204 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGLCIAI 325 K A ++ EG F + P+ GE V+N + A I Sbjct: 205 ------KSEAAEIYPLEIRAEAEGTCFITNWEPELEIFVPIIGEHNVFNTMAAMLAAREI 258 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381 GI+ + L+ + R E++ T S G RI D Y + +L+ +LK + S Sbjct: 259 GIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLKTFMHMDS 314 >gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC 15579] Length = 462 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 162/373 (43%), Gaps = 47/373 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N VS+D+R I+ G IF+A+ G +G+ F+ AI +GA +VS + I ++ Sbjct: 27 NSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGASLCIVS---EINFDKEKIGKSS 83 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++ V++T K L A K ++A+TG++GK+S V + +++ T Sbjct: 84 YVIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTKDLVAAVLSE----KYKVFKT 139 Query: 151 STISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F +N + P I+ L K+ + G+ H + H + + I +I Sbjct: 140 E--GNF--NNEIGLPLMIFKLDKSYDIAVLEMGMNHFN---EIHNMAEAAKPDIAII--- 189 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI+ +++ AK+ + + K+S I+ D+ +++ + +V Sbjct: 190 -TNIGISHIENLGSRENILKAKLEV-TDFFSKDSILIVNGDN----DLLSNFESDKYKVC 243 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----------FLFPLPGEFQVYNALV 317 +G + KF N + + + E +FD F +PG+ V N+L Sbjct: 244 KIGTEKKF--------DFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLNSLT 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + ++ + ++ L R + + +G I D Y + +S++ + + Sbjct: 296 AIACGKVLDMNYEDIQTGIKNLKATSMRLDII--KEKGFTIINDCYNASPDSMKAAIDVM 353 Query: 377 RTITSGRIIVVFG 389 + + R I + G Sbjct: 354 KNVKGKRTIALLG 366 >gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 487 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 156/372 (41%), Gaps = 51/372 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---- 91 DSR + G +FVA+ G + DGH F +A+A GA ++ + D A I P Sbjct: 33 DSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREV---DAPAVIVPPVPAEAT 89 Query: 92 --ILVVDNT-------RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141 + + +T L+ A + + P ++ VTG+SGK+S + Q+ + Sbjct: 90 GLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLE--- 146 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLD 195 +GPT + SF +N L P A + LS++GV H+ A + Sbjct: 147 ----PMGPTVAPPGSF--NNELGHPWTALRADEDTRHLVLELSARGVGHI---AKLCEVA 197 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G+ N+G H+ +Q+A AK L E L P + A++ ADD Sbjct: 198 PPRI-------GAVLNVGHAHLGEFGSQEAVARAKGELVESL-PADGVAVLNADDPLVAA 249 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQV 312 + R RV+ VG + H++ + ++Q T+ PL GE V Sbjct: 250 MASRTR---ARVVLVG-ESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHV 305 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 NAL AA + + +G V + L + V R V + G + D Y S+ Sbjct: 306 GNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPESMRA 365 Query: 372 ILKNIRTITSGR 383 LK + ++T GR Sbjct: 366 ALKTLASMTRGR 377 >gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus G9241] Length = 458 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens TA208] gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens LL3] Length = 456 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 77/371 (20%), Positives = 146/371 (39%), Gaps = 50/371 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + I ++D+R ++ +F+ + G +GH F+PQA +G A+ L D S Sbjct: 22 FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS- 73 Query: 85 TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137 N P +++VD+T + L A + ++ VTG++GK++ + + Sbjct: 74 --EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQ 131 Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSH 192 + +G + IG T+ + +D + A+ + +LS +V Sbjct: 132 YRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV----- 186 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 TN+G H+ +++ AK+ + L +E + Y + Sbjct: 187 ----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY----F 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E + R CR + G +G L+ ++ +++G D F P+ G V Sbjct: 225 GDEPLLREKAYTCRTTTYG-EGADNDLRLKEIKQAEEGTYFTIDGIDRSFFIPVLGRHNV 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A I GI L +L V R E V T + + Y + S++ Sbjct: 284 MNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAA 343 Query: 373 LKNIRTITSGR 383 ++ I T+ R Sbjct: 344 IELIETMKGYR 354 >gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 458 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 5 str. 8401] gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401] gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 4343-70] gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-218] gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-272] gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-227] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 69-1] gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA280] Length = 452 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus] Length = 463 Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 82/330 (24%), Positives = 137/330 (41%), Gaps = 59/330 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR + G +FVA G + DGH F A T + P Sbjct: 30 VEYDSRKVVPGGLFVAFPGERVDGHDF-----------ASAVVAAGAAGVLGTRDTGEPG 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 +VV+++ + ++ A + + PE ++ +TG+SGK++ ++ Q+ R +GPT Sbjct: 79 VVVEDSLRAVATLAHEVVARLPELTVVGLTGSSGKTTTKDYIGQLLSR-------LGPTV 131 Query: 152 TISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + + +N L P + A A + + ++GV H+ L GI + Sbjct: 132 ALPG-SLNNELGFPYTVLQAGADTRFLVLEMGARGVGHI-----------RHLTGIARPS 179 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G N+G HI + + AK L E LP+ A++ ADDA V A G Sbjct: 180 IGVVLNIGAAHIGEFGSVEGTALAKGELVEA-LPQTGVAVLNADDAL---VSAMASRTGA 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----------FPLPGEFQVYNA 315 RV++VG + L+ V VT+ G+ L + G QV N+ Sbjct: 236 RVVTVG-EAAGAQLRAV-------DVTLDPAGRASYVLEHGERRGTVRLRVAGRHQVANS 287 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 L AA + + G+ ++ L ++ +V R Sbjct: 288 LSAAAVALTAGLAFDDLVTALSEMSMVSDR 317 >gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 57-2] Length = 452 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter calcoaceticus RUH2202] Length = 466 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 145/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G +F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K + + G +H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ ++ AK ++ +LP AI+ D ++ E+ K A Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEIHKAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+ + G G I+ + + T+ P GE V NA A Sbjct: 246 Q--AHRISTFGVGGD-IYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+GI +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPNSM 350 >gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Novosphingobium aromaticivorans DSM 12444] Length = 489 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 154/374 (41%), Gaps = 40/374 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V DSR + G +F A+ G DGH ++ A +GA VV A F Sbjct: 42 VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGRGAAGAVVEHAC----FG------ 91 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V NT L + I+ VTG++GK+ V + R+ Sbjct: 92 -PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVKEALYAALDRASRGRAH--- 147 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ S+ +N + P+ LA+ + +S GV + + + RL ++ Sbjct: 148 -RSVKSY--NNHVGV--PLSLAR-MPARTSFGVFEMGMNHAGELAALTRL--VRPHVAIV 199 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + HI + ++A +AK +FE L P AII AD+ + + + +A RV+S Sbjct: 200 TTIAPAHIGHFAGEEAIADAKAEIFEGLEPG-GVAIIPADNRHFEHLRAKATLHAERVIS 258 Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G L V A VT + G+ + PGE V N+L AIG Sbjct: 259 FGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVMAAVEAIGG 318 Query: 328 D---SALVLEHLEKL------HVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 D + L L +E L H +P G + G + +D ++ +N S+ + L+ + Sbjct: 319 DLGAAGLALAEMEGLAGRGARHAIPAH----GGDGSGSALLIDESYNANPASMAVTLRQL 374 Query: 377 RTITSGRIIVVFGC 390 + R + + G Sbjct: 375 GQTPAARRVAILGA 388 >gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nitrosospira multiformis ATCC 25196] gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosospira multiformis ATCC 25196] Length = 449 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 25/291 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + G +FVA+VG DGH FI QA +GA +V D I P+ Sbjct: 11 VSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGI----PL 66 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V NTR L A+ + ++AVTG++GK++V + I +R+ + Sbjct: 67 IRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQA-----PEE 121 Query: 153 ISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAG 207 + + A D L T + + L+ L + H +V +H + L + K Sbjct: 122 MRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVA 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G HI + +A AK +FE L ++ A+I ADD +++ + A N ++ Sbjct: 182 LITNAGDAHIQGLGSVEAVARAKGEIFEGL-DQQGIAVINADDPHNRLWRELAGNR--QI 238 Query: 268 LSVGYQGKFIHLKKVCAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + G + K KV A + + Q+T+ + + +PGE V N Sbjct: 239 IDFGLKSK----AKVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRN 285 >gi|58700177|ref|ZP_00374680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533307|gb|EAL57803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 95 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 2/90 (2%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460 MGKIA AD I+TDDN R EDP KIR +I+ P +E G R EAI +++ N+ Sbjct: 1 MGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGM 60 Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +L+VAGKG+E I+ N + S D ++I+ Sbjct: 61 ILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 89 >gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus hilgardii ATCC 8290] Length = 460 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N V D+R + G +F+ + G DGH FI AI GA A + +S D + + Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSGT-HDGHDFIENAIKGGAVATLWAS-----DHTNRL 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ + K ++AVTG++GK++ + + S + Sbjct: 79 PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204 T T +F +N + P Y Q ++ G+D+ +LD + KL Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + T +G HI++ T+ +AKM + L K IY D +++RA Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317 ++ G H V A Q S E D P+ G++ V NAL Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375 A + I +++ L + R E++ T ++G +I D ++ + + E++ Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351 Query: 376 IRTITSGRIIVVFG 389 +T GR IVV G Sbjct: 352 SQTDVMGRRIVVLG 365 >gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bifidobacterium adolescentis ATCC 15703] Length = 517 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 102/464 (21%), Positives = 198/464 (42%), Gaps = 42/464 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ D+R ++ G F+ G + +L QG + +++ S DFS ++ P Sbjct: 44 ITYDTRKVEPG-TFLCCKGRFKAEYL-------QGIDERGLAAYVSENDFSDATQA--PG 93 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTG--TSGKSSVASFVQQICQRSGLSSFQIGPT 150 L+VD+ RK ++L ++ YG+ P++ L V G + + +++ Q +G S + Sbjct: 94 LIVDDVRKAMALLSAEFYGR-PQDQLKVVGITGTKGKTTTAYLTQ-AMLNGCSGGKCALF 151 Query: 151 STISSFAQ-----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S++ + ++ LTTP + + + G+ ++ +E SS R+ G+ Sbjct: 152 SSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYLVMEVSSQAYKVDRVFGLTFD 211 Query: 206 AGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 +F N+ DHI H T + Y + K ++ + ++ AD A + + + A + Sbjct: 212 VAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNC----RALVLGADCARADLIRQDARHT 267 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321 V + G + A + + +I ++G + L G+F NA A + Sbjct: 268 SVPVTTFALGGDSMADVMAAPANDDHSRFSIVIDGTSIGELSLTLDGDFNYANAAAAVAI 327 Query: 322 CIAIGID--SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A G D SA + L ++ V GR E VDYAH S+ +L + Sbjct: 328 ARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIVDYAHNYASVTALLDYVD 387 Query: 378 TITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434 I ++ G G++ +R + A D D ++T ++ E E++ A++ Sbjct: 388 QRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHLVLTFEDTDDEPVEQVCADMND 447 Query: 435 GI--PGFIEKG--NRIEAIRTAIEMLNKQ----DVLVVAGKGHE 470 + P K +R EA+ T + K ++++ GKG+E Sbjct: 448 SVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILIIGKGNE 491 >gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei 53G] Length = 452 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLNAIKAGLANLKAVPGRL 317 >gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 465 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 17/251 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + + ++ + D+R + G ++VA+ G + D HLF +A+A+GA ++V D Sbjct: 14 LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD- 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P +VV +T + L+ AS L +LA+TG++GK+SV + + I + + Sbjct: 73 -------VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAA 125 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S + SS +N + P + A + + A G + D + Sbjct: 126 QSSTV---VYASSGNCNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIV 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 N+ H++ + K ++ L P + A+I DDA++ ++ Sbjct: 178 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVP 236 Query: 263 AGCRVLSVGYQ 273 AGC VL G Q Sbjct: 237 AGCAVLRFGLQ 247 >gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya dadantii 3937] Length = 453 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+EVS+D+R + G +FVA+ G K D H + A+ GA A++VS + + Sbjct: 24 ISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNDGAAALLVSKHLPI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVVD+TR L A + + ++A+TG+SGK+SV I ++ G Sbjct: 75 VPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCG 126 >gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Subdoligranulum variabile DSM 15176] Length = 453 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 67/382 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT-IRS 88 I+ V +DSR ++ G +FV G + DGH F A GA I+ + T + Sbjct: 21 IHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADRTVVVP 80 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ + +V + LF+ R+ G VTG+ GK++ F + LS+F Sbjct: 81 DSALAMVRMASNYRMLFSPRIIG--------VTGSVGKTTTKEFCYAV-----LSAFG-- 125 Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIA 206 + + Q+N + P+ ++ L A Y V + ++ H + RL ++ A Sbjct: 126 -NTLKTEGNQNNEIGVPNTLFRLESATEY----AVVEMGMD---HAGEIERLTRCVRPSA 177 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---------------- 250 G T +G H++ T++ AKM + LP +P ++ AD+ Sbjct: 178 GIITMIGVSHLENLGTRENILKAKMEICAG-LPDGAPLVLNADNDLLPTAQVPGRLRAVW 236 Query: 251 -AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 +E RA N + G QG L + E F P G Sbjct: 237 FGIEQEADVRAEN-----IQTGAQGTTFTL-------------VDREYGRFPVSIPTAGL 278 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSN 367 VY+AL A +G+D A + L + R V RGG ++ Y + + Sbjct: 279 HTVYDALSAYAAATRLGLDPANCAKALSRYQTTGMRQHIV---ERGGVTVIEDCYNASPD 335 Query: 368 SLEMILKNIRTITSGRIIVVFG 389 S++ + ++ + + R I + G Sbjct: 336 SMKAAISVLKALPNKRKIALLG 357 >gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K-12 substr. W3110] gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia sp. 4_1_40B] gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli H736] gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli] gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. MG1655] gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli str. K12 substr. W3110] gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli str. K-12 substr. DH10B] gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli BW2952] gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli DH1] gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 196-1] gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 146-1] gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Escherichia coli ETEC H10407] gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia coli DH1] gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1520] gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H736] Length = 452 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 175-1] gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 116-1] gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E482] Length = 452 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae Sd197] gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197] gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1617] Length = 452 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003] gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003] Length = 1288 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 132/331 (39%), Gaps = 42/331 (12%) Query: 63 AIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+A+ A+ ++ S A + A R+ P V R + A R + V Sbjct: 60 ALARAADCVIASPAIPETHVERRAARRAGLP--VKSRARALAEVIADR-------QTICV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 G+ GKS+V + + I +G F +G ++FA RL + L Sbjct: 111 AGSHGKSTVTAMLIHILSAAGQEDFGYMLG-----AAFADAARLP-----------ARLG 154 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + V+ +HG + ++ TNL +H D++ A F L Sbjct: 155 APDAPFVTEACEAHGALAAWQPSLAIL----TNLDDEHADHYGGLPGLRRAVAD-FLSRL 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P E A+ DD ++++RA C L+ G G L+ V T+ + G Sbjct: 210 PPEGRAVACGDDPQVLDLLRRAR---CAALTYGL-GADNDLRAV--PDGTGGATVFLNGT 263 Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 D L +PG + NAL A G+ + +GI A L + R + V +R R Sbjct: 264 DLGRLSLIVPGRHNLRNALAALGMALTLGIGFATAAGALADFPGLARRLQPVAPGNRL-R 322 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 ++ D+AH +E L +R T GR+I +F Sbjct: 323 LFDDFAHHPAEIEAALAVLRETTEGRLIAIF 353 >gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LF82] gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus cereus Q1] gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus ATCC 10987] gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus H3081.97] gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH187] gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus Q1] gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST26] gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna ACS-171-V-Col3] Length = 454 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 159/353 (45%), Gaps = 51/353 (14%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL N +I ++ + + +S+D+R IQ +F+A+ G+ DG +I A +GA Sbjct: 7 KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 69 EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 VV+ Y ++ D+ P++ VDNT++F+ A ++A+TG++GK+ Sbjct: 65 SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T Q N + I L+K + + T V+V Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160 Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 E + + R + IA TN+G H+ +T++ AK + E L ++ Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296 I+ DD+ +EV K+ + + ++ G Y+ + I + + T S+ Sbjct: 218 IFILNNDDSILREV-KQEYKLPEKTITFGIKPDSDYRMEMIKADETGS-------TFSI- 268 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 D F L G Q+YNA ++ + +G+D + + + L+ + + R E + Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320 >gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 536] gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia coli 536] gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli F11] gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 200-1] gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 60-1] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sonnei Ss046] gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii Sb227] gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli ATCC 8739] gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli SE11] gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella sp. D9] gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046] gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227] gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli HS] gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E24377A] gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli ATCC 8739] gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii CDC 3083-94] gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 53638] gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B7A] gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E22] gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E110019] gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli B171] gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 101-1] gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11] gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli 55989] gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli IAI1] gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)] gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli B str. REL606] gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli BL21(DE3)] gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O26:H11 str. 11368] gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O103:H2 str. 12009] gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase [Escherichia coli O111:H- str. 11128] gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Escherichia coli 042] gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088] gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 84-1] gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 115-1] gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 182-1] gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 187-1] gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 119-7] gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 107-1] gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 124-1] gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 78-1] gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli W] gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 145-7] gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1827-70] gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli W] gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 85-1] gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella dysenteriae CDC 74-1112] gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella flexneri CDC 796-83] gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli EC4100B] gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli EPECa14] gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli E128010] gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli LT-68] gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1180] gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 1357] gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia coli KO11] gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H120] gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli H489] gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TA007] gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 117-3] gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli E1167] gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA143] gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli TA271] gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H591] gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 5216-82] gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella boydii 3594-74] gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella sp. D9] gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Escherichia coli UMNK88] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Shigella boydii ATCC 9905] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 460 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 155/374 (41%), Gaps = 44/374 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + ++N V D+R + G +F+ + G DGH FI AI GA A + +S D + + Sbjct: 25 QTEVNGVCFDTRRLTPGQLFIPLSG-AHDGHDFIENAIKGGAVATLWAS-----DHTDRL 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LVVD+ + K ++AVTG++GK++ + + S + Sbjct: 79 PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTTTKDMIASVL------SGE 132 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KL 204 T T +F +N + P Y Q ++ G+D+ +LD + KL Sbjct: 133 FNVTKTYDNF--NNEIGVP----------YTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180 Query: 205 IAGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + T +G HI++ T+ +AKM + L K IY D +++RA Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGL--KADGYFIY--DGDEPLLIERAK 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE---GKDFDFLFPLPGEFQVYNALV 317 ++ G H V A Q S E D P+ G++ V NAL Sbjct: 237 QVDFSKMTFGRS----HTDDVFATKTSDGQYNTSFEVNLWPDKKVTIPMMGDYNVNNALA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLEMILKN 375 A + I +++ L + R E++ T ++G +I D ++ + + E++ Sbjct: 293 AITVGKLFQIPQIEIIQKLSHFDLTKNRTEWL-TGNKGEKILSDVYNSNPTAAREVLTAF 351 Query: 376 IRTITSGRIIVVFG 389 +T GR IVV G Sbjct: 352 SQTDVMGRRIVVLG 365 >gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia albertii TW07627] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F LP+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTG-LPENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL A Sbjct: 241 PNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAGAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LAMSVGATRDAIKAGLANLKAVPGRL 317 >gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M718] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Saccharopolyspora erythraea NRRL 2338] gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 156/372 (41%), Gaps = 51/372 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---- 91 DSR + G +FVA+ G + DGH F +A+A GA ++ + D A I P Sbjct: 4 DSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREV---DAPAVIVPPVPAEAT 60 Query: 92 --ILVVDNT-------RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141 + + +T L+ A + + P ++ VTG+SGK+S + Q+ + Sbjct: 61 GLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLE--- 117 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLD 195 +GPT + SF +N L P A + LS++GV H+ A + Sbjct: 118 ----PMGPTVAPPGSF--NNELGHPWTALRADEDTRHLVLELSARGVGHI---AKLCEVA 168 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 R+ G+ N+G H+ +Q+A AK L E L P + A++ ADD Sbjct: 169 PPRI-------GAVLNVGHAHLGEFGSQEAVARAKGELVESL-PADGVAVLNADDPLVAA 220 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQV 312 + R RV+ VG + H++ + ++Q T+ PL GE V Sbjct: 221 MASRTR---ARVVLVG-ESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHV 276 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 NAL AA + + +G V + L + V R V + G + D Y S+ Sbjct: 277 GNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPESMRA 336 Query: 372 ILKNIRTITSGR 383 LK + ++T GR Sbjct: 337 ALKTLASMTRGR 348 >gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354] gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus ATCC 4342] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa Temecula1] gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella fastidiosa M23] Length = 468 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 17/245 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + D+R + G ++VA+ G + D HLF +A+A+GA ++V D Sbjct: 23 RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T + L+ AS L +LA+TG++GK+SV + + I + + S + Sbjct: 76 -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 SS +N + P + A + + A G + D + Sbjct: 134 --VYASSGNCNNEIGLPLAVIAAP-----DNADFAVYEMGAGKLGDIGYLTDIVTPDVAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H++ + K ++ L P + A+I DDA++ ++ AGC VL Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPAGCAVL 245 Query: 269 SVGYQ 273 G Q Sbjct: 246 RFGLQ 250 >gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus watsonii C-113] Length = 454 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 34/372 (9%) Query: 23 MQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 +Q R + IN VS+D+R + G +FV + G + DGH FI QA +GA A ++ Sbjct: 16 VQGRLQGINIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAALLEQ--- 72 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 I P + V + R L A+ + I+AVTG++GK++V + I Sbjct: 73 ------RINDPLPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMIASI-- 124 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G I + + P+ L L +S + + A+ G ++ Sbjct: 125 --------LGWVEPILATRGNLNNDIGVPLTL---LELDTSHSFAVIEMGANRPGEIEYL 173 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + TN G H+D + AK +F+ + E AI+ ADD + Sbjct: 174 SRLTRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GSEGVAILNADDPHFS--YW 230 Query: 259 RAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R G V+ G + + + + A + T+ PLPG V+NAL Sbjct: 231 RDLAGGLPVMGFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALA 290 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKN 375 A+ IA+G+D + L L +PGR + GG +D + +N SL+ L+ Sbjct: 291 ASAAAIALGVDRQHLSASLAALPSIPGRLQI--RRGIGGMRLLDDTYNANPASLQAALEL 348 Query: 376 IRTITSGRIIVV 387 + R +V+ Sbjct: 349 LAKFPGERALVL 360 >gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus sp. WH 5701] Length = 478 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 48/328 (14%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATIRSN 89 + + +DSR ++ G +FV +VG + DGH F+ A+ QGA A++ S + A +RS+ Sbjct: 26 SRIGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQAEALVRSS 85 Query: 90 TP-ILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I +VD+T+ R G P ++AVTG++GK++ ++ + Sbjct: 86 GGRIWLVDDTQAAYQELGRLWRRQGSAP--VIAVTGSAGKTTTRELIRAVLS-------P 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQ-HRLD--- 200 +GP ++S +N P+ L KA G H V VE GL + RL Sbjct: 137 LGP--VLASVGNENN-DIGVPLTLLKA-------GGEHRAVVVEMGMRGLGEIERLSRCA 186 Query: 201 --GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I +I TN+G HI +++A AK + L P + +I A D + + Sbjct: 187 EPDITVI----TNIGTAHIGRLGSREAIATAKCEIVAALRP-DGLVVIPAGDPLLEASLA 241 Query: 259 RAHNAGCRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGE 309 + RV+ V Q G+ + + ++ + G ++ PLPG Sbjct: 242 AVWSG--RVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLIWGRAEPGAREHSTELPLPGR 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLE 337 N L+A + +G+D L L LE Sbjct: 300 HNARNLLLALAVASELGVDP-LQLSRLE 326 >gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 41/272 (15%) Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+TGT+GK+++ + + ++ QR G N + + + AL+Y Sbjct: 107 AITGTNGKTTITTMLYEMLQRKG------------------NAIVAGNIGFPLSALAYDF 148 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMRLFE 235 + +V++E L +L GI+ A + NL DH+DY + +AY+ +KMR++E Sbjct: 149 EEEEKYVALE-----LSNFQLLGIETFAPEVSVVCNLAPDHLDYMPSVEAYYESKMRIYE 203 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 KE + DD V+ A N C + + + L + + + Sbjct: 204 N-CQKEDWFLRNVDDP---TVVAYAKNIPCTTIDFSLTRQDVDLYRKDGKVWLHDLMLFE 259 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E + FP+ G++ + NA+VAA + +G+ A + + V R E++G G Sbjct: 260 ESR-----FPIVGDYNLSNAMVAACMAYKLGVSLADIQATISSFQPVEHRLEYIGEKD-G 313 Query: 356 GRIYVDYAHTSN-----SLEMILKNIRTITSG 382 + Y D T+ +L KNI + G Sbjct: 314 VKFYNDSKATNTHAVTAALSSFDKNILLLAGG 345 >gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 1012] gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella dysenteriae 155-74] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechocystis sp.] Length = 454 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 124/307 (40%), Gaps = 45/307 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN + +D+R + +G +F+A+ G DGH FIPQA+ GA A+V ++ T+ Sbjct: 29 RINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDR--PVEGLGETVAQ 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +V++T A+ + I+ VTG+ GK++ + + + G Sbjct: 87 ----FLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG------- 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIA 206 R + I + K L LS + VE + G Q L D K Sbjct: 136 -------NVHKTRANYNNEIGVPKTLLELSPDHDFAI-VEMAMRGRGQIALLADIAKPTI 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G HI ++ A AK L P ES AI+ D+A E +R + Sbjct: 188 GLITNVGTAHIGLLGSELAIAEAKCELLAH-QPPESTAILNRDNALLMETAQRFWQG--K 244 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGL 321 ++ G +G +H +V+G++ PL G N L A L Sbjct: 245 TITYGLEGGDVH--------------GTVDGENLILDGVSLPLPLAGVHNASNYLAAIAL 290 Query: 322 CIAIGID 328 +G+D Sbjct: 291 AQCLGLD 297 >gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V TNS Sbjct: 294 SMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNS 329 >gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis subsp. spizizenii str. W23] Length = 457 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 76/378 (20%), Positives = 154/378 (40%), Gaps = 50/378 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + I+ V++D+R ++ +F+ + G +GH F+PQA G A++ + Sbjct: 21 QYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEAGVAAVLWDRS------E 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 N +++VD+T L A + ++ VTG++GK++ + + Sbjct: 75 PNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKDMIHAVLGTRYRV 134 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVTHVSVEASSH 192 + G + IG T+ + +D + AK LS L++ Sbjct: 135 HKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANPD----------- 183 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 A TN+G H+ +++ AK+ + L KE +IY D Sbjct: 184 -------------AAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDGVLIYIGD-- 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + ++++ ++ + G Q + L+ V +++ +++G + F P+ G+ V Sbjct: 227 -EPLLQKTYSCQTKTYGAGAQNDY-QLQDVS--QSEEGTHFTIKGMEKTFFIPILGKHNV 282 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A GI + L L V R E + T+S I Y + S++ Sbjct: 283 MNAMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAA 342 Query: 373 LKNIRTITS-GRIIVVFG 389 ++ ++ G+ ++V G Sbjct: 343 IQLTESLEGYGKKMLVLG 360 >gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W + I V DSR I++G +F+ +V + DGH ++ AI GA A + +D S Sbjct: 19 EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I + +L V +T L K ++A+TG++GK++ + Sbjct: 73 ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 + Q T ++F +N + P ++ LS + T V V G+D++ +LD + Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +A T +G HI++ T+ +AKM + L ++ +I D+ + Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317 +A VL+ G ++ + + + + + V + DF + G + V+NAL Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + I + + L + R E++ + G +I D Y +++ +L Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348 Query: 377 RTI-TSGRIIVVFG 389 + T G+ I+V G Sbjct: 349 EQVPTEGKRIIVLG 362 >gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia magna ATCC 29328] Length = 454 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 159/353 (45%), Gaps = 51/353 (14%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL N +I ++ + + +S+D+R IQ +F+A+ G+ DG +I A +GA Sbjct: 7 KTITELTN--TIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 69 EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 VV+ Y ++ D+ P++ VDNT++F+ A ++A+TG++GK+ Sbjct: 65 SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T Q N + I L+K + + T V+V Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160 Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 E + + R + IA TN+G H+ +T++ AK + E L ++ Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296 I+ DD +EV K+ + + +++G Y+ + I + + T S+ Sbjct: 218 IFILNNDDPILREV-KQEYKLPEKTITLGIKPDSDYRMEMIKADETGS-------TFSI- 268 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 D F L G Q+YNA ++ + +G+D + + + L+ + + R E + Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320 >gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W + I V DSR I++G +F+ +V + DGH ++ AI GA A + +D S Sbjct: 19 EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I + +L V +T L K ++A+TG++GK++ + Sbjct: 73 ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 + Q T ++F +N + P ++ LS + T V V G+D++ +LD + Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +A T +G HI++ T+ +AKM + L ++ +I D+ + Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317 +A VL+ G ++ + + + + + V + DF + G + V+NAL Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + I + + L + R E++ + G +I D Y +++ +L Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348 Query: 377 RTI-TSGRIIVVFG 389 + T G+ I+V G Sbjct: 349 EQVPTEGKRIIVLG 362 >gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum] Length = 486 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 24/199 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+ +T +AYF ++F++ + +P ++ +D ++ E+ +R+ G + Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248 Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G + +V A + + TI+++G++ + +PG+ V N Sbjct: 249 TVGYGTRDAVQAHPEVPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373 A +G D ++E L V RFEF G G IY DYAH + +L Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368 Query: 374 K----NIRTITSGRIIVVF 388 + ++ GR+IV F Sbjct: 369 RRCATRVKAAGKGRVIVAF 387 >gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Scardovia inopinata F0304] gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Scardovia inopinata F0304] Length = 540 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 124/528 (23%), Positives = 218/528 (41%), Gaps = 74/528 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL-FIP 61 L++LI++D + I+P + +S D+R + + K H ++ Sbjct: 32 LKELIHQD--SWTDTPEIWPAETAGMTFTRISYDTRQVDDHTLLFC----KGRFHSSYLD 85 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 +A G V + D+S R+ ++V + +K +SL +S Y ++P + V Sbjct: 86 KADQDGLPCYVAEN-----DYSQVTRAIG--IIVTDIKKAMSLLSSAFY-RYPAKEITVI 137 Query: 122 GTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYL 170 G +G A F I L+++ G + +SS ++ LTTP + L Sbjct: 138 GITGTKGKTTTAYFTHAI-----LNAYTGGKAALLSSVDNCLDGHTFVESDLTTPESLDL 192 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFN 228 + + SQG+ ++ +E SS R+ G+ G+F N+ DHI H + + YF Sbjct: 193 FRMMRQAVSQGMKYLIMEVSSQAYKVDRVYGLTFALGAFLNISPDHISPIEHPSFEDYFY 252 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---KVCAI 285 K ++ S ++ AD +S V + A G V + + V +I Sbjct: 253 CK----RQIALNSSALVLNADMVHSSLVTQDAGLRGIPVTTFRLENSNADRTADLTVTSI 308 Query: 286 HNKQ----QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSA-----LVLEH 335 + Q ++GKD F +PG+F NA A L A G+D L+ Sbjct: 309 REDKGESPQFQARLKGKDLGRFSLSIPGDFNGANAAAALALISACGLDLTNPHVQQALQA 368 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392 +EK+ + GR E + + VDYAH S ++L I + RII+V G G Sbjct: 369 MEKV-TIAGRMEIFSSPDKSLVGIVDYAHNGVSASVLLDYIDQAYGRLNPRIILVTGSAG 427 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSE---------DPEKIRAEIIHGIPGFIEKG 443 ++ +R + + A + I T+++ +E D ++ HGI + + Sbjct: 428 NKAYDRRQEIVEAAQNRISRFIFTEEDTDTEPIIDICQQMDQAVSNPQVEHGI--ILSRS 485 Query: 444 NRI-EAIRTAIEMLNKQDVLVVA--GKGHE------TVHIVTNGEKKM 482 + EA R E + V+A GKG+E H+V G+ ++ Sbjct: 486 QALQEAFRDGKEHARQGKTTVIAAIGKGNERWIKHLNKHVVYQGDDRI 533 >gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15] Length = 452 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLVNLKAVPGRL 317 >gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus ATCC 19977] gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium abscessus] Length = 490 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 87/324 (26%), Positives = 125/324 (38%), Gaps = 45/324 (13%) Query: 84 ATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 A I P LV N R L A + G L VTGT GK+S S + Q Sbjct: 82 AAIPKTNPELVEANRRGIPVLLRPVVLADLMAGY---RTLMVTGTHGKTSTTSMLIVALQ 138 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G SFA L A ++ S V + S L Q+R Sbjct: 139 HCGYDP----------SFAVGGELNE------AGTNAHHGSGDVFVAEADESDGSLLQYR 182 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + I + TN+ DH+D+ + +AY +A F E L E ++ DD + + + Sbjct: 183 PNLIIV-----TNIEADHLDHFGSVEAY-SAVFDEFAETLGSEGVLVVCLDDPGAAALAR 236 Query: 259 RAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPG 308 RAH G RV G Q + + + + Q Q+ ++ E +PG Sbjct: 237 RAHERGIRVRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQLAGESAPRTMRLSVPG 296 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 NAL A IG VL+ L V RFE VG+ R++ DYAH Sbjct: 297 RHMALNALAAVVTAAEIGAAVDDVLDGLAGFEGVRRRFELVGS-VESVRVFDDYAHHPTE 355 Query: 369 LEMILKNIRTITS----GRIIVVF 388 + +L+ + I + GR +VVF Sbjct: 356 VRTVLQAVSGIVAQQGFGRSVVVF 379 >gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha14] gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha14] Length = 445 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLARETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC AIG+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter calcoaceticus PHEA-2] Length = 466 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 143/351 (40%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V + Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 87 -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G +H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ ++ AK ++ +LP AI+ D ++ E++ A Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+ + G G ++ V + + P GE V NA A Sbjct: 246 --KAHRISTFGVGGD-VYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +AIGI +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350 >gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 451 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 75/384 (19%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R + AG +FVA+ G + D H F QA+A GA A++V L Sbjct: 24 ITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAVAAGASALLVERELPLA--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV ++ K L + + +LA+TG+ GK++V I ++ G Sbjct: 75 IPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTTVKEMATAILRQEG------DV 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 +T +F +N + P +T + +E QHR ++L A Sbjct: 129 LATAGNF--NNEVGVP----------------LTLLRLEP------QHRFAVMELGANHP 164 Query: 207 ---GSFTNLGR-----------DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 T+L + H++ + + F+AK +FE L + AI+ AD+ + Sbjct: 165 GEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGL-GEGGTAIVNADNEF 223 Query: 253 SKEVMKRA-HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLP 307 + R H A S+ Q + H + V + N+Q V ++ +G + +P Sbjct: 224 WPKWQARGIHCA----FSIEDQRQPFHARNV--VINQQGCAEFVMVTPQG-EISLTLAIP 276 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G V NAL AA +A+G A V LE + V GRF GG VD + + Sbjct: 277 GRHNVANALAAAAGTLALGASLASVKAGLELMAPVKGRF---CVQRWGGLTLVDDTYNA- 332 Query: 368 SLEMILKNIRTIT--SGRIIVVFG 389 S+E +L I +T SG ++VFG Sbjct: 333 SVESVLAGIDALTAMSGYKVLVFG 356 >gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Acetohalobium arabaticum DSM 5501] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 142/311 (45%), Gaps = 35/311 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I ++S DSR I +G +F AI G++ DGH F+ A+ A VV + ++ ++ + Sbjct: 23 KEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRAEAVGAVVDNE-QVERYN-NV 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 S+ I+ V++T + L A ++ +TG++GK++ V + + + F+ Sbjct: 81 DSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTTTKDLVASVLE----TKFK 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T +N P ++ + +Y V VE + GL IK + Sbjct: 137 TLKTEG----NYNNEFGLPLTLFRLDS-TY------EAVVVELAMRGLGD-----IKTLC 180 Query: 207 -------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G TN+G H++ +Q+ AK L E L P AI+ DD Y +++ Sbjct: 181 QIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENL-PPTGTAILNGDDKYVRQM--- 236 Query: 260 AHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALV 317 A +L G + G + +V + + +S + ++F PL GE+ VYNAL Sbjct: 237 ADETKAEILYYGRESGNNLQASRVDNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALA 296 Query: 318 AAGLCIAIGID 328 A G+ + +G++ Sbjct: 297 AVGVGLKLGLN 307 >gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] Length = 470 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 20/334 (5%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 +I ++ P I +S DSR I +G F AI G++ DGH + A+A GA +VV Sbjct: 1 MIAAMAGRPFGTLPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S A A R P++VVD+ L + I+AVTG+ GK++ + Sbjct: 61 SEAR----LPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEML 116 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + SG ++++SF +N P + LA+ + + GV V + + G Sbjct: 117 RHVLSPSGKVH------ASVASF--NNHWGVP--LTLAR-MPDDTDYGVFEVGM--NHPG 163 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + I+ T + H+ ++ + AK +FE L P ++ D+ Sbjct: 164 EIRPLVAMIRPYVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQF 222 Query: 254 KEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + A + G + S G K L + + +++ G+ + PG Sbjct: 223 NFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHI 282 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 NAL A G+ +G D + L L GR Sbjct: 283 AENALAALGVVRIVGADMEKAIAALATLKPEKGR 316 >gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 456 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 160/374 (42%), Gaps = 38/374 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W + I V DSR I++G +F+ +V + DGH ++ AI GA A + +D S Sbjct: 19 EWEDISITSVCFDSRKIESGALFIPLVA-ENDGHKYVEAAINGGAVATLWQ-----EDHS 72 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 I + +L V +T L K ++A+TG++GK++ + Sbjct: 73 ENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVL------ 126 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI 202 + Q T ++F +N + P ++ LS + T V V G+D++ +LD + Sbjct: 127 ATQFNVHKTFANF--NNEIGVP--------MTILSMEPNTEVLV--VEMGMDRYGQLDFL 174 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +A T +G HI++ T+ +AKM + L ++ +I D+ + Sbjct: 175 SKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHG-LKEDGELVINGDEPL---LTT 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALV 317 +A VL+ G ++ + + + + + V + DF + G + V+NAL Sbjct: 231 KAKEVSQEVLTFGSLDNN-DMRAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A + I + + L + R E++ + G +I D Y +++ +L Sbjct: 290 ALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKN-GAKILSDVYNSNPTAVKEVLYAF 348 Query: 377 RTI-TSGRIIVVFG 389 + T G+ I+V G Sbjct: 349 EQVPTEGKRIIVLG 362 >gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii SH205] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 34/345 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + +DSRH + G +F+A+ G + D H F+ Q QG + +V I + Sbjct: 37 IKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQGCQIAIVEHP---------IDVD 87 Query: 90 TPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LVV +TR L L A R ++A+TG+SGK++ + I R + Sbjct: 88 IAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTGSSGKTTTKEMLGSILSR-------LA 140 Query: 149 PTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIA 206 PT I+ +N L P + L K Y + G +H + L Q + GI Sbjct: 141 PT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNLVQPHVAGI---- 195 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+G H+ ++ AK ++ +LP + AI+ A D ++ ++ A Sbjct: 196 ---LNIGTAHLGEFGGREGICRAKSEIYAHILP-QGVAIVPAADDFTADIRNSAQ--AHS 249 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 LS G QG ++ ++ + + P GE V NA A +AIG Sbjct: 250 NLSFG-QGGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGEHNVQNATAATAFALAIG 308 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 I+ ++E LE+ GR F+ +++D + +N M Sbjct: 309 IELDDIVEGLEQAQGAKGRLNFI---QHQNHLFIDDTYNANPTSM 350 >gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB056] gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB058] gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB059] gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii AYE] gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acinetobacter baumannii AB0057] Length = 466 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q +A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKTPHLFIDDTYNANPTSM 350 >gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp. DR1] Length = 466 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH + G F+A+ G + D H F+ Q A G + +V ++ Sbjct: 31 QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVE--- 87 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 88 ------IAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G +H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ ++ AK ++ +LP AI+ D ++ E++ A Sbjct: 194 GI-------LNIGTAHLGEFGGREGICRAKSEIYRHILPN-GVAIVPQQDDFTAEILDAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+ + G G ++ + + T+ P GE V NA A Sbjct: 246 --KAHRISTFGVGGD-VYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +AIGI +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALAIGIGLEDIVQGLEQAQGAKGRLNFI---QKSPYLFIDDTYNANPTSM 350 >gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412] gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli UMN026] gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412] gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302] gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 198-1] Length = 452 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G +N + P + L + + A+ G + Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTPEYDFAVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK72] Length = 456 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 85/378 (22%), Positives = 150/378 (39%), Gaps = 54/378 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A + S Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 + L+VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 69 ERPVAEGAYLLVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L +E+ +I D E Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL--RENGLLIVPADKIVNE 225 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + GC ++ G I L ++ N + + D P+ G++ NA Sbjct: 226 FLP----TGCDLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKYNATNA 278 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 ++AA + G+ + + +L + R E+ + G I D Y ++ +IL+ Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337 Query: 375 NIRTITS---GRIIVVFG 389 TI + GR + V Sbjct: 338 TFSTIPANPGGRKLAVLA 355 >gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei U32] gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei U32] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 18/227 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+H T +AY ++F E + + P I+ DD + ++ ++A + G R Sbjct: 186 TNVEPDHLDHHGTAEAY----TKVFTEFVSRIVPGGLLIVCGDDPAADDLGRQAEDLGVR 241 Query: 267 VLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V G G L+ V A + V + ++G++ +PGE NA+ A Sbjct: 242 VRRYGRTATGPGDARILEYVPA-PDGGVVRLVLDGEEVSVRVAVPGEHMALNAIAALLAG 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTIT 380 I +G +++ L V RFEF G R G R+Y DYAH + L+ +RT Sbjct: 301 IELGAPVPGLVDGLAAFGGVRRRFEFKG---RAGDVRVYDDYAHHPTEVAAQLRAVRTAA 357 Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 SGR+IVVF + AL LAD +V D E+PE Sbjct: 358 GSGRVIVVFQPHLYSRTKTFSVEFAEALSLADEVVVLDVYGAREEPE 404 >gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum R] gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum] gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R] Length = 486 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 24/199 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+ +T +AYF ++F++ + +P ++ +D ++ E+ +R+ G + Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248 Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G +V A + + TI+++G++ + +PG+ V N Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373 A +G D ++E L V RFEF G G IY DYAH + +L Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368 Query: 374 KNIRT----ITSGRIIVVF 388 RT GR+IV F Sbjct: 369 SAARTRVKAAGKGRVIVAF 387 >gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 151/364 (41%), Gaps = 64/364 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V D+R + G +FVA+ G DGH F+ QA QGA A +VS+ I + Sbjct: 26 LSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALVSN-------QEKIPGD 78 Query: 90 TP-----ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGL 142 P ILV D R F L A+ R P +A+TG+ GK++V V + RS + Sbjct: 79 LPNDFGLILVNDTLRGFQKLAAAYRKSFSFPR--IAITGSIGKTTVKDIVAHVLASRSPV 136 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 T +F +N + P LS L + + +A+ L + I Sbjct: 137 -------YKTYKNF--NNHIGVP--------LSLLQMEE----NHQAAVLELGMNHAGEI 175 Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LLPKESPAIIYA 248 L+A T +G HI+Y T++ AK L LL K+S + Sbjct: 176 DLLASLVQPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLI 235 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLP 307 Y E+M + N + + +++ + + + + G+ F+ PL Sbjct: 236 AHLYPGELMYYSVNEKADIWA----------EQIETVEGGTRFKVYLASGEYFEAFLPLH 285 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G V NAL A + +G+D+ + L + + RFE + N + +Y+ A+ ++ Sbjct: 286 GRHSVLNALPAVAIAKRLGMDTEQIAYALSTVQLSAMRFEQI--NGKHATVYISDAYNAS 343 Query: 368 SLEM 371 + M Sbjct: 344 PVSM 347 >gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia fergusonii ATCC 35469] gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Escherichia fergusonii ECD227] Length = 452 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F L P+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|183983182|ref|YP_001851473.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M] gi|229620048|sp|B2HGR5|MURC_MYCMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|183176508|gb|ACC41618.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium marinum M] Length = 488 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + +AY E L P + ++ ADD S + +R+ G RVL Sbjct: 189 TNIEADHLDFYGSTEAYVGVFDAFVERLAPGGA-LVVCADDPGSAALAERSAELGIRVLR 247 Query: 270 VGYQGKFIHLKKVCAIHNKQ-------QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G G + +Q Q+ ++ E +PG NAL A Sbjct: 248 YGSAGHAEAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNALGALLAA 307 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 I +G VL+ L V RFE VGT + R++ DYAH + L+ +R++ Sbjct: 308 IEVGAPVGEVLDGLAGFEGVRRRFELVGT-AESVRVFDDYAHHPTEVRATLEAVRSVVRQ 366 Query: 381 --SGRIIVVF 388 SGR++VVF Sbjct: 367 SGSGRLLVVF 376 >gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Erwinia sp. Ejp617] Length = 452 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 23/332 (6%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 I QL+ + + I +V++D+R AG +F+A+ G + D H F+ AI G ++VS Sbjct: 9 IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 + D S +VV +TR L A+ + + I+A+TG+SGK+SV Sbjct: 69 KRLPV-DVSQ--------VVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 I + G + + G +N + P + K + + + A+ G Sbjct: 120 AILRECGETLYTAGNL--------NNDIGVPLTLLRLKPQHRYAV-----IELGANHQGE 166 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + D ++ NL H++ + AK +F L P AII + Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PLNGTAIINGESHDWP 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + H S G + V + D D PLPG + N Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIAN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 AL A+ L +++G + V L L VPGR Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRL 317 >gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli AA86] gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli M605] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAANN----DFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLVNLKAVPGRL 317 >gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1] Length = 454 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E +I EV++D+R IQ+G +F+A+VG + D H F QA +GA A++V + Sbjct: 21 EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAADKGAAALIVERQLDI------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++V +++ L L + ++ + LA+TG+ GK++V V I G + Sbjct: 74 --DIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKTTVKEMVASILSGLGQVLYT 131 Query: 147 IG--------PTSTISSFAQDN 160 G P + + S QD+ Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153 >gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli TW10509] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F L P+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga sp. RQ2] Length = 426 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 104/455 (22%), Positives = 184/455 (40%), Gaps = 75/455 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ ++ G +FVA+ G K DGH FI +A+ GA AI+ T+ S+ I +V Sbjct: 12 NSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAE--------RKTVDSDR-IFLV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +++ L+ A G ++ VTG+SGK++ + + + + S Sbjct: 63 ESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F + T + L+ L+ + + + + AS G H N+G Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSA 169 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQ 273 H+++ T++ KM + + + ++ D +EV C + L G + Sbjct: 170 HLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-------PCYRKTLFFGKE 222 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGID 328 G LK TI+ E + FD LF L G + Q+ N +AA LC+ + Sbjct: 223 GGDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRALG 276 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 + + L L VPGRF + G + VD + ++ S+E +L+ G Sbjct: 277 ETVDIFDLASLKTVPGRF---NVREKKGVLIVDDTYNASPEAFQTSIEALLR-----FPG 328 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEK 427 R V G G+R + +G+ L++ D + P +S+DPEK Sbjct: 329 RRFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEK 387 Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 I ++ + + K +R I +EM K+ Sbjct: 388 IAKDLASRVTEGDVVLFKASRAVRIEKVLEMFEKE 422 >gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas sp. MED121] Length = 449 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 79/379 (20%), Positives = 161/379 (42%), Gaps = 47/379 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R + V +D+R G +++AI G+ DGH ++ A+ GA A++ S QD + Sbjct: 21 EDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETALKNGALAVL-----SQQD--SQ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------ICQ 138 +R P+++VD+TR+ + A L ++A+TG++GK+++ ++ Q + + Sbjct: 74 VR---PLVLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKTTIKEWLSQCLAERVKVLK 130 Query: 139 RSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 ++ QIG T+ +++++ T S + L+ +++ + +S + SH Sbjct: 131 TEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQITTPDIAIISNASGSHYE 190 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 ++GI G+ L E AI+ DD + Sbjct: 191 GFGSIEGIAKEKGALLT-------------------------GLTAEGVAILNHDDPWFD 225 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + C G G + K+V + + +G+++ +PG+ QV N Sbjct: 226 YWVGLLDKRACVSFGFG-SGADLVAKQVELFSQSSKSILCYQGEEYVLHLAVPGKHQVAN 284 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ + +G+ E L + V+ R EF NS+ + Y + S+E + Sbjct: 285 AMAVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDCYNASPKSVEAAID 344 Query: 375 NIRTITSGRIIVVFGCGGD 393 + + + G+ +V G G+ Sbjct: 345 VLMSQSQGQKWLVLGALGE 363 >gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa C102] gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa C102] Length = 445 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC AIG+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus epidermidis M23864:W1] Length = 451 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 39/372 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ R I V+ DSR I+ +F+ G DGH FI QA+ GA V S + + S Sbjct: 20 QYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGA---VASFSEKGTELS 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 + PI+ V++T + L A + Y KH ++AVTG++GK++ ++ + Sbjct: 77 EDVEG--PIIWVEDTLQALQDLA-KAYLKHVNPKVIAVTGSNGKTTTKDMIESVLT---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGMP--------LTILDLDEDTEISILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEV 256 + IA TN+G H+ +++ AK + L K++ IY D+ Sbjct: 176 LSTIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGL--KDNGTFIYDGDEPLLTPH 233 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNA 315 +K+ A +++SVG G L VC + + + I D ++ P+ G + NA Sbjct: 234 VKQIQQA--KLISVGL-GDANSL--VCHVDDVETEGIGFTINNDESYVLPILGIHNMKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +A + +G+ A + E++ + + R E T+ I Y + S++ + Sbjct: 289 AIAIAVGHELGLPYATIKENIRHVQLTGMRMERHQTDDNVTVINDAYNASPTSMKAAIDT 348 Query: 376 IRTITSGRIIVV 387 + ++ +I+++ Sbjct: 349 LSSMEGRKILIL 360 >gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanobacter sp. RED65] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 29/241 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R +Q G +FVA++G++ DGH ++ QAI +GA A+++S + P Sbjct: 28 VSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRMEV---------TVPF 78 Query: 93 LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 L V +T + L +RL ++P ++A+TG+SGK++V + + ++ Sbjct: 79 LQVADTTEALGRLGLYNRLRFENP--VVAITGSSGKTTVKGMMATLLRQQN--------E 128 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 ++ +N + P + L S + + AS G + + + T Sbjct: 129 VLVTRGNLNNHIGAPLTL-----LRLSDSDDYAVIELGASGLGEIAYTAELARPTVSILT 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G H++ + + K + + L + A++ AD Y +E KRA RV+S Sbjct: 184 NAGNAHLEGFGSVEGIVKTKGEIIDA-LADDGVAVLNADSPYFEEWQKRA--GSRRVISF 240 Query: 271 G 271 G Sbjct: 241 G 241 >gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 156/372 (41%), Gaps = 39/372 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + I V+ DSR I+ +F+ G DGH F+ QA+ GA A + + D Sbjct: 20 QYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDIDD-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 PI+ VD+T L A + Y KH ++ VTG++GK++ ++ + Sbjct: 78 ---NVKGPIIWVDDTLIALQQLA-KAYLKHVNPKVIGVTGSNGKTTTKDMIESVLH---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG 201 + F++ T +N + P L+ L T +S+ E G H ++ Sbjct: 130 TEFKVKKTQG----NYNNEIGLP--------LTILELDLDTEISILEMGMSGF--HEIEL 175 Query: 202 IKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + IA TN+G H+ +++ AK + L KE I D+ + + Sbjct: 176 LSNIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIG-LKKEGTFIYDGDEPLLEPHV 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315 K+ +A C LSVG + VC + + + + S+ G + + P+ G + NA Sbjct: 235 KKIKHAKC--LSVGLKQDN---ALVCEVEHSENDGIAFSINGNEH-YKLPILGIHNMKNA 288 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +A + +G+ + ++ + + R E T+ I Y + S++ + Sbjct: 289 AIAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDT 348 Query: 376 IRTITSGRIIVV 387 + + +IIV+ Sbjct: 349 LSQMEGRKIIVL 360 >gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 486 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 24/199 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+ +T +AYF ++F++ + +P ++ +D ++ E+ +R+ G + Sbjct: 193 TNVEPDHLDFFKTPEAYF----QVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIK 248 Query: 267 VLSVGYQGKFIHLKKVCA---------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + G +V A + + TI+++G++ + +PG+ V N Sbjct: 249 TVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAA 308 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSLEMIL 373 A +G D ++E L V RFEF G G IY DYAH + +L Sbjct: 309 ALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVL 368 Query: 374 KNIRT----ITSGRIIVVF 388 RT GR+IV F Sbjct: 369 SAARTRVKAAGKGRVIVAF 387 >gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia fergusonii B253] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F L P+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGAIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Escherichia coli M863] gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli STEC_7v] Length = 452 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F L P+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAN----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Parvibaculum lavamentivorans DS-1] Length = 479 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 134/287 (46%), Gaps = 22/287 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR ++AG +FVAI+G DGH ++ A+ +GA A +VS+ + +R+ P+ Sbjct: 29 VSIDSRTLEAGDLFVAIIGENSDGHAYVEGALKKGAAAAIVSAP------TEAMRAAGPL 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V +T L+ + ++AVTG+ GK+ ++ I G +T Sbjct: 83 VIVTDTLAALNALGRAARARTKAKVVAVTGSVGKTGTKEALKLILSEQG---------AT 133 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +S A N L P+ LA+ + + G+ V + +L ++ T + Sbjct: 134 HASAASYNNLWG-VPLSLAR-MPAATRFGIFEVGMNHPGEITPLSKL--VEPFVSLITTV 189 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVG 271 H+++ + + +AK +F+ L K AI+ D+ + + + +A +G R++S G Sbjct: 190 EAVHMEFFDSVEQIADAKGEIFDG-LQKGGVAILNRDNPHYERLRAKAEKSGAGRIISFG 248 Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ L+K + V+ ++ G+ + +PG V N+L Sbjct: 249 EHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLA 295 >gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio cellulolyticus CD2] Length = 457 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/365 (21%), Positives = 151/365 (41%), Gaps = 30/365 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V++DSR ++ G F+ +VG K DGH +I + QG VS + +D + Sbjct: 25 EFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQG-----VSGCLTQKDTAG--YE 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ V++T L + +S K + +TG+ GK+S V + + + Sbjct: 78 GKVVIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTKDMVSSVLNK------KFN 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +F +N + P ++ + S+ V + S G +K Sbjct: 132 VLKTQGNF--NNEIGVPLTVF-----NLESTHEAAVVEMGMSGFGEISRLTSIVKPDIAI 184 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI+ ++Q AKM +FE L + I+ DD + + R + Sbjct: 185 ITNIGLSHIEKLGSRQNILKAKMEIFEG-LKSQGLVILNGDDNL---LFGLKNLLNYRTV 240 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + + + +Q + I++ +++ P+PG ++NAL A I + Sbjct: 241 FYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAIAAGIELN 300 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRI 384 I ++E + + PG+ + G +I D Y + S+E + ++ I R Sbjct: 301 IPVKDIIEGIGEFS--PGKMRLNIMDHNGIKIINDAYNASPQSMEAAINVLKDIAGDNRT 358 Query: 385 IVVFG 389 I V G Sbjct: 359 IAVLG 363 >gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces flavogriseus ATCC 33331] Length = 472 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 35/229 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A G + DGH + +A+ GA A++ + + P +VV Sbjct: 34 DSREVRQGSLFAAFAGERVDGHDYAERAVEAGAVAVLAARPVGV-----------PAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ L A + ++A+TG++GK+S + QI +R + + G Sbjct: 83 DDVVAALGALARAAVERLGTTVVALTGSAGKTSTKDLIAQILERKAPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +N + P A A + + ++G+ H+ A GL R+ G Sbjct: 136 -SLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYLA---GLTPPRI-------GLVL 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 N+G HI +++A AK L E+LP++ A++ ADD + + R Sbjct: 185 NVGSAHIGEFGSREAIAQAKGELV-EVLPEDGAAVLNADDPLVRAMASR 232 >gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter sp. 1501(2011)] Length = 507 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 150/360 (41%), Gaps = 46/360 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +D+R IQAG F+AIVG DGH F+ AI +GA A++VS Q A P L Sbjct: 51 TDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVS-----QPIEALA---VPQLK 102 Query: 95 VDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 VD+TR A+ +H + ++A+TG+SGK++V ++ I + ++ T+ + Sbjct: 103 VDDTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQSTTLV 162 Query: 154 SSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 + +N P + L + Y + G HV A + + +K N Sbjct: 163 TRGNLNNDFGVPMMLLELEQQHRYAVLELGANHVGEIAYTTAM-------VKPDVACILN 215 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+ + K +++ L + S A++ DD Y++++ A V+ G Sbjct: 216 IGTAHLGEFGGRDNIAKTKAEIYQS-LTESSTAVVPFDDDYTQQLTAVAKQHTPHVIHYG 274 Query: 272 YQGKFIHLK------------------KVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQ 311 +Q HL+ + A+ + K + + D P+ GE Sbjct: 275 WQ----HLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFDLDSQTSVVDITLPMSGEHN 330 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NAL AA A GI ++ L + GR G + G +D + +N M Sbjct: 331 VSNALAAAACAYASGIAPEVIAAGLNQATSSKGRL---GRQTLGMHHIIDDTYNANPNSM 387 >gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 144 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N IF R+ I E++ DSR+++ G +F+A+ G K DG I A+ +GA A+ Sbjct: 4 NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133 AY ++ + ++ P++ V LS A R YG N++ VTGT+GK+SV V Sbjct: 60 AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119 Query: 134 QQ 135 Q Sbjct: 120 AQ 121 >gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1] gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1] Length = 925 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 54/402 (13%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 +LF G+ P I A+TGT+GKS+ A V +I + GL+ +G +T + + L Sbjct: 508 ALFPPGRRGRIP--IFAITGTNGKSTTARMVGRILCQHGLN---VGMATTSGVYFNGHLL 562 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-- 220 A L + V +E + G+ + L + G+ N+ DH+ Sbjct: 563 KEADASGPRSARMVLRNPAVDAAVLETARGGILREGLGYDRADVGAVLNVTADHLGLKGI 622 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 T +A + K + E + + +I+ ADD ++ A +AG R++ +G + Sbjct: 623 DTVEALADVKSVVVENVA-RRGFSILNADDPM---CLRIARHAGGRIVWFSLEGGARMAE 678 Query: 281 KV---------------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + +H Q T+ + + EF + NAL A Sbjct: 679 TLRRHLAAGGMAVLREADEGGGEIVVHRGGQRTVLMHASEIPATLGGIAEFNIANALAAV 738 Query: 320 GLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMI 372 +C+A G+ + V + L PGR + S G R+ VDYAH +L + Sbjct: 739 AMCMAHGVPAETVRDGLRAFTSSFEDSPGRLNMM--ESHGRRVIVDYAHNPAGLIALGQV 796 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-----DNPRSEDPEK 427 + +R GR I + GDR MG+IA + D I + PR + Sbjct: 797 VDRLRG-GHGRAIGMVSIPGDRRDCDIVEMGRIAAGIFDDIIFREAPDGRGRPRGQTNAL 855 Query: 428 I-RAEIIHGIPGFIEKGNRI----EAIRTAIEMLNKQDVLVV 464 + + + G+P +E+ +RI A+ A+ M D+LV+ Sbjct: 856 LTQGALNAGVP--MERVHRIIDEFAAVDAALRMARPGDLLVI 895 >gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 1587] gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-2] Length = 453 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F+ QA+A GA A++V Sbjct: 20 EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 462 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 46/377 (12%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W + + V+ DSR +QAG +F+ ++G DGH +I AI GA A + +S D + Sbjct: 21 WPDVNVTGVAFDSRKLQAGDLFIPLMG-ANDGHQYIQSAIEHGAVATLWAS-----DHAD 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + P+++V +T L K ++AVTG++GK++ + + Sbjct: 75 DVPEDLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDMIASVL------G 128 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIK 203 Q T T ++F +N++ P ++ LS + T V V G+D LD + Sbjct: 129 TQFNVTKTHANF--NNQIGVP--------VTLLSMEPNTEVVV--VEMGMDHFGELDFLS 176 Query: 204 LI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSK 254 + T +G HI++ T+ +AKM + L KE I+ D +K Sbjct: 177 RLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGL--KEDGTFIFNGDEPLLQERAK 234 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 EV + G + + + Q S+ D + P+ G + V N Sbjct: 235 EVSQHQRTFGLD------DTNTLAGSDITTSRAQTQFKTSL-WPDNTYTIPMMGAYNVNN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 AL A + I A + + R E++ T RG I D Y + +L Sbjct: 288 ALAALLVADTFHIRPAAAQQAIASFVPTENRTEWL-TGYRGEAILSDVYNSNPTAARRVL 346 Query: 374 KNIRTI-TSGRIIVVFG 389 + T G+ I V G Sbjct: 347 AAFAAVPTKGQRIAVLG 363 >gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 52/338 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I VS+D+R I++G +FVA+VG + D H F QA + GA A++VS A +Q Sbjct: 21 DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQAASAGASALLVSKAVDVQ------ 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L+V++T+ L ++ +A+TG+ GK++V V I + G + Sbjct: 75 ---VPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKTTVKEMVASIMTQKGQVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----------GVTHVSVEASSHGLDQ 196 G +F +N + P L+ L SQ G HV A + L Sbjct: 132 AG------NF--NNDIGVP--------LTLLRSQPEDDFAVIELGANHVGEIAYTTQL-- 173 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYS 253 + N+ H++ + AK +++ L P S AI+ D + Sbjct: 174 -----VNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKPG-SVAIVNLDSNGGEHW 227 Query: 254 KEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 +EV+ K S Y+ + + + ++ + TI FD + G+ Sbjct: 228 REVLSDKTVKTFSLSDNSAEYKARNVTMN----VNGEASFTIQTPETSFDVKLGIIGQHN 283 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 V NAL A L + +G + ++ L L V GR E V Sbjct: 284 VSNALAATALSLELGATTEMIASGLANLSKVKGRVETV 321 >gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 453 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F+ QA+A GA A++V Sbjct: 20 EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1272] gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1273] Length = 458 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 34/351 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K ++IN + Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA Sbjct: 7 KQVEQMINGTGL-AKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESGA 65 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + A N P++ V++T L + A + ++ VTG++GK+S Sbjct: 66 VATLWMKGV------ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTS 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V + + F++ T +F +N + P I L+ + V + + Sbjct: 120 TKDIVTSLLA----TKFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMG 166 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 SS G + + A TN+G H+ +++A AK+ + L +E +Y Sbjct: 167 MSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYN 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D N ++ G Y + L + H K ++ F Sbjct: 225 GDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISF 278 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 P+ G+ VYN L + + G+ + + L L + R E V TNS Sbjct: 279 YIPVLGKHNVYNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNS 329 >gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter uraniireducens Rf4] gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Geobacter uraniireducens Rf4] Length = 468 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 41/371 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS+DSR + AG +FVA+ G + DGH ++ A+A+G A +V++ + N Sbjct: 23 VSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVARGVRAFLVAA----DRLAGKQPPN 78 Query: 90 TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I V V +T + L A+ + ++ +TG++GK++ + I ++G G Sbjct: 79 DVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTTKEMLATILAQTGPGLKTSG 138 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + + P+ L + L+ V + + + +D + +A Sbjct: 139 NLNNLIGL----------PLMLLR-LTKRDRWAVLEMGMS------EPGEIDRLAEMANP 181 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN H++ + +A AK LF L + A+ ADD + + AG Sbjct: 182 RIGVITNAFTAHLESMGSVEAVAKAKGELFMR-LKTDGWAVYNADDPL---ISRCPAPAG 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + LS G +G + + + ++ + + T+ + G D G VYNAL AA Sbjct: 238 VKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAAAAH 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRT 378 +G+D L+ LE+ RF G + VD ++ +N M L++IR Sbjct: 298 LLGVDPELIRSGLEEFTPYDKRFSLEEIR---GVVLVDDSYNANPASMAAALVTLRDIR- 353 Query: 379 ITSGRIIVVFG 389 R I + G Sbjct: 354 -EESRAIAILG 363 >gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria lactamica ST-640] gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria lactamica 020-06] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQRAGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis MC58] gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis MC58] gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis H44/76] gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis CU385] gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis H44/76] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I + PL G N + A LC AIG+ +LEH++ +P R E +G Sbjct: 263 LIVTQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA] Length = 453 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 82/367 (22%), Positives = 161/367 (43%), Gaps = 37/367 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V D+R I+ I+ AI G + +G+ F+ +A ++GA +V L D + T T Sbjct: 25 NSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKGASIAIVDEI--LFDLNNTDNLQT 82 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSGLS 143 I V D + L+L A+ K ++ VTG+ GK+S +A+F+ + + + G Sbjct: 83 VIKVEDTEKALLNL-ANYYRKKLGLKVIGVTGSCGKTSTKDLIAAFLSEKYKVFKTKGNF 141 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + QIG I L S I +A +S+ G + V A+ D Sbjct: 142 NNQIGLPLMI--------LELDSSIDVAVLEMGMSNLG--EIDVLANCARPD-------- 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G HI+ +TQ+ AK +F + + II +D E + + + Sbjct: 184 --IAVITNIGLSHIENLKTQENILKAKSEIF-NYFDETNTLIINGED----ENLLKIKDK 236 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +L +GY ++ ++ + +K T+ + ++ F P+ G+ + N+++A + Sbjct: 237 CFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGKHNILNSMLAVEVA 296 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + + + + ++ L R + + N + I Y + +S++ + + + +G Sbjct: 297 KKLNVTFDEMKKGIKNLEATSMRLQVIKRN-KITIINDCYNASPDSMKSSMDVLSSYKTG 355 Query: 383 RIIVVFG 389 R I + G Sbjct: 356 RKIAILG 362 >gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria meningitidis FAM18] gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis FAM18] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 116/256 (45%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ KD PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -KKNGVVFIDDSKGTN 330 >gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Staphylococcus lugdunensis HKU09-01] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 42/392 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + KI V+ DSR +Q +F+ G DGH F+ Q+I GA A + Q+ Sbjct: 20 QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSIQDGAAAAFYQTG---QEID 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 +++ P++ V +T L A ++AVTG++GK++ ++ + + + Sbjct: 77 SSLEEQ-PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLK----T 131 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 132 QFKVKKTQG----NYNNEIGMP--------LTILELDYDTDISILEMGMSGF--HEIELL 177 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 IA TN+G H+ ++ AK + L K++ IY D E + Sbjct: 178 SSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL--KDNGIFIYDGD----EPLL 231 Query: 259 RAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYN 314 + H A +++SVG + H VC I + Q I+ + + + P+ G + N Sbjct: 232 QPHVAQVKHAKLISVGLEQ---HNTYVCTIDSNQNDGIAFNINNTEHYELPILGVHNMRN 288 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ ++ +++ + + R E T + I Y + S++ + Sbjct: 289 AAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASID 348 Query: 375 NIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404 + + +I+++ C GD Q +G+ Sbjct: 349 TLSNMEGRKILILADCLELGDNSQHMHEEIGE 380 >gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii ATCC 19606] Length = 466 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AII D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYHHILP-QGVAIIPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria cinerea ATCC 14685] gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria cinerea ATCC 14685] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGCLKQGDED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella fastidiosa Ann-1] Length = 468 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 17/245 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ + D+R + G ++VA+ G + D HLF +A+A+GA ++V D Sbjct: 23 RVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDHVLPELD------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T + L+ AS L +LA+TG++GK+SV + + I + + S + Sbjct: 76 -VPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILEHAAAQSSTV- 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 SS ++N + P + A + + A G + D + Sbjct: 134 --VYASSGNRNNEIGLPLAVIAAP-----DNADFAVYEMGAGKSGDIGYLTDIVTPDVAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H++ + K ++ L P + A+I DDA++ ++ A C VL Sbjct: 187 VNNIAPAHLERMGSLLGVARTKGEIYAALRPGGT-AVINMDDAFALWFEQQCVPASCAVL 245 Query: 269 SVGYQ 273 G Q Sbjct: 246 RFGLQ 250 >gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter italicus Ab9] Length = 461 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 37/369 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85 KI +S+DSR ++ +F+ + G K DG F+ A+ +GA+A++ + + L+DF Sbjct: 25 KIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAVLTARLDNIEYLKDFPFN 84 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I+ V++T + L A K +AVTG++GK++ + QI + + Sbjct: 85 ------IIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGKTTTKDMIAQILSK----KY 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ T +F +N + P I+ + ++ + V + S G + + +K Sbjct: 135 KVLKTE--GNF--NNEIGLPLTIF-----NLENTHQIAVVEMGMSGFGEIRRLKNIVKPQ 185 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 FTN+G HI+ +++ AK L E+ +E+ ++ ADD ++K Sbjct: 186 VAVFTNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LLKILQQYSS 241 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G + I K C I + + T+ + + + +PG VYN+L A + Sbjct: 242 KYYRYGIKSGEI---KACDIEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVG 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380 + G+D + E L+ PG+ + +G +D A+ +N S++ L +R Sbjct: 299 LEFGVDVDDMAEALKDFQ--PGKMR-LNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFP 355 Query: 381 SGRIIVVFG 389 R I V G Sbjct: 356 GKRKIAVLG 364 >gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea sp. MED297] Length = 447 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 14/133 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R + +S+D+R ++AG I+VA+ G DGH ++ AI +GA A+VV A L D Sbjct: 22 DRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQDA--LPDCP--- 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P LV+ +TRK L + A L + ++A+TG+ GK+S + + +I + Q Sbjct: 77 ---VPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFK------LQ 127 Query: 147 IGPTSTISSFAQD 159 G +T +F D Sbjct: 128 PGLLATEGNFNND 140 >gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli CFT073] gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia coli CFT073] gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 83972] gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 185-1] gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 45-1] gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Escherichia coli ABU 83972] gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli MS 153-1] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGCHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 33/366 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R +Q G +FVA+ + DGH F A+ +GA A++VS+ + + P Sbjct: 29 VSIDTRTLQPGDLFVALTAQR-DGHDFAQAALDKGAAAVLVSNPEAC---------SGPR 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV+N L + + VTG+ GK+SV + + ++G + + Sbjct: 79 LVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSVKEALAAVFIKAGPAHW------- 131 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 S + +N P + LA+ + + V + + + R+ ++ T + Sbjct: 132 -SEKSYNNHWGVP--LTLAR-MPEATRHAVFEMGMNHKGEISELTRM--VRPHVAMITKI 185 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVG 271 H++ + +A +AK +FE L + A+I ADD ++ +M+ +G +L G Sbjct: 186 APAHLENLGSMEAIADAKAEIFEGL-EADGVAVIPADDEFAPRLMQAVQGSGAGFMLDFG 244 Query: 272 YQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G + + + + V GK DF LPG Q NA + G+D Sbjct: 245 LTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAAALGAGVDPD 304 Query: 331 LVLEHLEKLHVVPGR-FEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTITSGR 383 L L+ L +L GR F SRG I VD ++ +N M +LK + R Sbjct: 305 LALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLKLRKPSGQDR 364 Query: 384 IIVVFG 389 I V G Sbjct: 365 KIAVIG 370 >gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus thermodenitrificans NG80-2] gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus sp. G11MC16] Length = 460 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 147/346 (42%), Gaps = 28/346 (8%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W ++ VS+D+R IQAG ++V ++G +GH F+ +A +GA A++ + A Sbjct: 21 EWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWAEA------E 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T + P +VVD+T L A+R + ++ VTG++GK++ + + S Sbjct: 75 GTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIAALLS----S 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQ-HRLDG 201 +++ T +N + P L+ L+ + T ++ VE G + +L Sbjct: 131 QYRVQKTEG----NLNNHIGVP--------LTLLALEEGTDIAVVEMGMSGFGEIEQLTT 178 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 I + A TN+G H+ +++ AK+ + L + + + D+ E++ + Sbjct: 179 IARPNAAVITNIGEAHLQELGSREGIAKAKLEILSG-LQGDGLFVYHGDEPLLAELVP-S 236 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 V++ G + I + E P+ G+ VYNAL A Sbjct: 237 LPLPQHVVTFGEGEDNDYYPTTVRIEAAGTSFVINELPRQTLFIPVLGKHHVYNALAAIA 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 + G+ + L +L V R E V T RG + D + S Sbjct: 297 VARFFGVSWENIAAALSRLQVTRMRTEVVKTK-RGFTVINDAYNAS 341 >gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 301] gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301] gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T] gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2002017] gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2a str. 2457T] gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2747-71] gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-671] gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri 2930-71] gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Shigella flexneri K-304] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGMEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 477 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 91/389 (23%), Positives = 156/389 (40%), Gaps = 34/389 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++I ++ P I +S DSR I G F AI G++ DGH + A+A GA +V Sbjct: 9 DMIAAMAGRPFGTLPEGITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMAMANGASLLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VV++ L + I+AVTG+ GK++ Sbjct: 69 VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + SG ++++SF +N P+ LA+ + + GV V + + Sbjct: 125 LRHVLSPSGKVH------ASVASF--NNHWGV--PLTLAR-MPDDTDYGVFEVGM--NHP 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + ++ I+ T + H+ + + AK +FE L P ++ D+ Sbjct: 172 GEIRPLVEMIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQ 230 Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A + G + S G K L + + +++ G+ + PG Sbjct: 231 FNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRH 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHT 365 NAL A G+ +G D + L L GR G R G +D ++ Sbjct: 291 IAENALAALGVVRIVGADMEKAIAALATLKPEKGR----GKRHRLSIGSGSFTLIDESYN 346 Query: 366 SNSLEM-----ILKNIRTITSGRIIVVFG 389 +N M +L + GR I V G Sbjct: 347 ANPASMRAAIALLAASEPTSRGRRIAVLG 375 >gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 EDL933] gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. Sakai] gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4024] gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14359] gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK2000] gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. FRIK966] gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. EDL933] gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str. Sakai] gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4196] gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4113] gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4076] gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4401] gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4486] gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4501] gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC869] gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC508] gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4206] gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4045] gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4042] gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC4115] gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli] gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. TW14588] gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase [Escherichia coli O157:H7 str. TW14359] gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. CB9615] gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. EC1212] gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. G5101] gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. 493-89] gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H- str. H 2687] gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O55:H7 str. USDA 5905] gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. LSU-61] gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1125] gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli O157:H7 str. 1044] Length = 452 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G +N + P + L + + A+ G + Sbjct: 128 TLYTAGNL--------NNDIGVPMTL-----LRLTPEYDYAVIELGANHQGEIVWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc punctiforme PCC 73102] Length = 451 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 138/324 (42%), Gaps = 40/324 (12%) Query: 11 FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 +L+ L P+ E + +VS +DSR ++ G +FVA+ G+K DGH F+P AIA+ Sbjct: 7 LSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIAK 66 Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA A +V Y F P+L V +T K + ++ VTG+ GK Sbjct: 67 GAIAAIVDFEYENPGF--------PVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGK 118 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ + + G Q+ T ++ +N + P K L L ++ + Sbjct: 119 TTTKELIAAVLGTKG----QV--HKTYGNY--NNEIGVP------KTLLELGAEN-DYAV 163 Query: 187 VEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +E + G Q L I + G TN+G HI+ +++A AK L E + +S A Sbjct: 164 IEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MAADSVA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 II D+ + + VL+ G+ G I + + N Q +E Sbjct: 223 IINHDNPLLMATAAKVWHG--EVLTYGFSGGDIQGQ---LLDNDQ-----MEVAGIQLPL 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328 PLPG N L A + +GID Sbjct: 273 PLPGRHNATNFLAALAVAKVLGID 296 >gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosococcus halophilus Nc4] Length = 448 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 99/407 (24%), Positives = 160/407 (39%), Gaps = 88/407 (21%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R + G +FVA+ G DGH F+ QA +GA A ++ TI + P Sbjct: 24 VSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQ---------TIEDSLPQ 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + R L A+ + ++AVTG++GK++V + + Sbjct: 75 VEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASV---------------- 118 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLD-QHRLDGIKLIAGS- 208 L A S L++QG + + V + GLD HR I++ A Sbjct: 119 -----------------LGGAGSVLATQGNLNNDIGVPLTLLGLDPSHRFAVIEMGANQP 161 Query: 209 ----------------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 TN G H+D + AK +F+ + P A++ ADD + Sbjct: 162 SEIGYLSCLVRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGVNPG-GVAVLNADDPH 220 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------- 305 + + +G+ +V A H + EG F + P Sbjct: 221 ----FSYWRDLAGELPVIGF--GLTQSAEVTAHH----LAAHSEGSRFTLVTPVGKTPVQ 270 Query: 306 --LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 LPG V NAL A+ + IA+G+D + L L +PGR + GG +D Sbjct: 271 LSLPGRHNVLNALAASAVAIALGLDRDQISAALAALPSIPGRLQI--RRGAGGMRLLDDT 328 Query: 364 HTSN--SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406 + +N SL+ L+ + R +V+ F G+ +MGK A Sbjct: 329 YNANPASLKAALELLAEFPGERFLVLGDFAELGEEAAPLHRMMGKQA 375 >gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum L-1] gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum L-1] Length = 473 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGNSEWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTLAV---VTNIDPEHLDHYGSFDKVKDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 E +P A++ D + ++ R + R+++ G+ + I + V I + + Sbjct: 206 VENVPFYGAAMLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVQPIPGGNRFDV 263 Query: 294 SVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +D P+PG V NA+ A G+ + +GID A V K V RF Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFT 323 Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 VG + GG + DY H ++ +L R GR+I V Sbjct: 324 KVGEIAVGGGTATVIDDYGHHPVEIKAVLAAAREGAKGRVIAV 366 >gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 875 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 169/404 (41%), Gaps = 56/404 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I++VTGT+GK++ + QI + G + +G TST + D + A + Sbjct: 480 IISVTGTNGKTTTVRMISQILKMYG---YTVGMTSTDGIYVDDVCIYKGDNSGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234 L+ + + +E + G+ + L G TN+ DH ID +T + K L Sbjct: 537 LADKNIDAAVLETARGGIVREGLGYDLADVGIITNISEDHLGIDGIETLEDLAFVK-SLV 595 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQ 290 E + K+ +++ ADD + + KRA +GK I H + + ++ Sbjct: 596 VEAVKKDGYSVLNADDPMTPYISKRA------------KGKIIYFSMHENNITIKRHLEE 643 Query: 291 VTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAGLCIAIGIDSAL 331 ISV K+ D + GE + V NA+ A I I + Sbjct: 644 GGISVYVKN-DTIVIANGEIVPVAKIDEIPATLNGKVLYNVENAMAAIAASYGIKIPVNV 702 Query: 332 VLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + ++ + PGRF S R+ VDY H +S+ ++++ R + R++ V Sbjct: 703 ISKGIKSFYCDENHNPGRFNIFNVGSF--RVLVDYGHNIDSIRKVIESARKLNPNRLLGV 760 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-PGFIEKGN- 444 G GDR +G+I + D + +D + R P +I + G+ G + K + Sbjct: 761 IGVPGDRSDSSTLKIGEICGEGFDKVYIKEDLDLRGRKPGEIAKLLEIGVLKGGLSKEDV 820 Query: 445 -----RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483 ++A++TA+ D++V+ + + V V N K+S Sbjct: 821 NVILKEVDALKTAMYEAQPGDLIVIFYEKYAPVVDVINNFIKIS 864 >gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Aliivibrio salmonicida LFI1238] Length = 452 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+DSR+I+A +FVA++G + D H F+ A QGA A++VS + S+ Sbjct: 24 ISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEEQGAVALLVSH---------EVDSS 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V +T K L ++ + +A+TG+ GK++V + I +RSG Sbjct: 75 LPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKTTVKEMLASILKRSG 126 >gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum Rt17-B1] gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum Rt17-B1] Length = 451 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 44/275 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 AVTGT GKS+ S + G + ++L + L Sbjct: 110 FAVTGTDGKSTTTSMLANSLIDLGADPY----------------------VFLGALHNKL 147 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLF 234 H + + + LD+ + G +L F TN+ DH++ +Q+ + Y+++ F Sbjct: 148 EHGNYRHGKSDIAVYELDESQ-PGYELFRPEFLIITNIREDHVENYQSLEHYYSS----F 202 Query: 235 EELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 E L+ + +AD+ + V ++ +++ +G + Q VTI Sbjct: 203 ETLIKNSKFVVTFADEKKFKGNVTFGVYSGDFKLVERKQEGFY------------QTVTI 250 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN- 352 + F P+PG NAL L +IG + VL+ E + RF N Sbjct: 251 FTPYGERKFFLPVPGYHNALNALAVISLLSSIGYNIDKVLDSFEDFRLPGRRFNVSYDNP 310 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 SR I DYAHT++ +E++LK R + R IV+ Sbjct: 311 SRKITIVDDYAHTADEIEVLLKTSREVYPERKIVL 345 >gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens ATCC 13124] Length = 453 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + S++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVL------SYK 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 T +F +N + P L L V++ E GL Q IK + Sbjct: 134 YKVFKTKGNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus tetradius ATCC 35098] Length = 460 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + I VS+DSR IQ G +++ +VG DG LFI + + A A ++ Y +++ Sbjct: 22 YDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKKAAAFLIDKDYKIKN--- 78 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + VD+T K L A + I+ +TG++GK++ + ++ ++ Sbjct: 79 --NISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTKDLLYEVLKK---- 132 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + TI + +N + P I LS V V + S G +K Sbjct: 133 --KFNVQKTIGNL--NNEIGVPKTI-----LSLREDCEVAIVEMGTDSFGDISLTTSIVK 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 TN+G H++ +T++ AKM + E L P E I DD Sbjct: 184 PDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNP-EGYFIYNGDD 229 >gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus torques L2-14] Length = 461 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/333 (22%), Positives = 133/333 (39%), Gaps = 47/333 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + +R+++ V+ DSR + +FVAI G + DGH FIPQ + GA + S QD Sbjct: 23 FLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVMEAGA-----LCSLSEQDLGD 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P + V + + L A ++ +TG+ GK+S + + S Sbjct: 78 V---DYPYIRVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTSTKEMIASVL------S 128 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGI 202 + T +F +N + P ++ + ++ G++H D L I Sbjct: 129 EKYNVLKTEGNF--NNEIGLPLTVFNIREEHEVAVLEMGISHFG--------DMKPLAKI 178 Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + TN+G H++ T+ K + + + PK S I DD K R Sbjct: 179 ARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGS-VIFNGDDDKLKSYTSRD- 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQV 312 G + L C H + ++G +F+ P +PG+ + Sbjct: 237 ---------GRTPVYFGLTSSCPFHVENIERKGLKGTYAEFVTPTSRFHAHISIPGDHMI 287 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 YNAL + A+G+D+ + +EKL + GR Sbjct: 288 YNALAGVAVGYALGMDNEEIARGIEKLVPIAGR 320 >gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC 29176] Length = 463 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 43/332 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ + V+ DSR +Q +FVAI G + DGH FIPQ + QG AI S L D + Sbjct: 26 KEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMDQG--AICSLSEQDLGDVT---- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P + V + + L A ++ ++G+ GK+S + + S + Sbjct: 80 --YPYIQVASCTEALKDLAEHYRRSLDIKVVGISGSVGKTSTKEMIASVL------SEKY 131 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206 T +F +N + P ++ L + V SH D L I + Sbjct: 132 CVLKTEGNF--NNEIGLPLTVF------NLRKEHEVAVLEMGISHFGDMEPLAKIARPDV 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G H++ T+ K +F+ + P + + DD +R Sbjct: 184 CVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDDKLRGYTSER------- 236 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317 G Q + L C H +Q + ++G F+ P +PG+ + NAL Sbjct: 237 ----GIQPVYFGLDPACPFHAEQIQKMGLKGTVATFVTPSSSFSAHVSIPGDHMISNALA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + A+G+ ++ +EKL + GR + Sbjct: 293 GVAVGYALGMKDEEIIRGIEKLVPIAGRNNLI 324 >gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 158/380 (41%), Gaps = 36/380 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N+V +DSR ++ G +FVA+ G + D H F+ QGA A+VV Sbjct: 38 LNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAAVVVERVPPGLAL------- 90 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF-QIG 148 P +VV +TR L A + ++ VTG++GK++V + I ++F + G Sbjct: 91 -PAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIATILA----AAFGEEG 145 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T +F +N + P ++ +A + + G+ H A + L Sbjct: 146 YLGTRGNF--NNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTL------- 196 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G N R+H ++ T +A + LP + A+ ADD ++ + R R Sbjct: 197 GLVNNAQREHQEFMATVEAVARENGAVIRH-LPADGVAVFPADDDFTP--LWREEAGARR 253 Query: 267 VLSVGY--QGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGL 321 VLS G Q + A + QV + +V F GE V NAL AA Sbjct: 254 VLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAAAAC 313 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 + GI V+ LE V GR + +R G + +D + +N S+ + + I Sbjct: 314 ALGAGIAIEAVVRGLESFAPVNGRLQR--KEARSGALVIDDTYNANPDSVRAAIDVLAAI 371 Query: 380 TSGRIIVVFGCGGDRDQGKR 399 R++V+ G DQG + Sbjct: 372 AGPRVLVLGDMGEVGDQGPQ 391 >gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] Length = 477 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 26/368 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++AG F AI G++ DGH + A+A GA +VV+ A R Sbjct: 26 ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFAVANGAGLLVVAEG----KLPALGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L A + I+AVTG+ GK++ ++Q SG Sbjct: 82 VPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKTTTKEMLRQALAPSGRVH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + ++SF +N P + LA+ + + GV + + S G + + ++ Sbjct: 137 -AAVASF--NNHWGVP--LTLAR-MPADTEFGVFEIGMNHS--GEIRPLVKMVRPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T + H+ + + +AK +FE L I+ D+A +++ + A + G +L Sbjct: 189 TTIAPAHLGNFKNIEEIASAKAEIFEGL-EDGGFVILNRDNAQFEQLEEAAQDQGIEHIL 247 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G K L + + + G+ + +PG NA+ G G Sbjct: 248 TFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVLGAVAVTGA 307 Query: 328 DSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRTITS 381 + E L L V GR + T G + +D ++ +N M +L T Sbjct: 308 NLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVLAETETQGY 367 Query: 382 GRIIVVFG 389 GR + V G Sbjct: 368 GRRVAVLG 375 >gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citrobacter youngae ATCC 29220] Length = 452 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F A GA A++VS A + ++ Sbjct: 24 LDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVSRA---------LDTD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR A+ + + P I+A+TG+SGK+SV I R G + + G Sbjct: 75 LPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTAAILSRCGKTLYTAG 133 >gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002] Length = 445 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 55/316 (17%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P Q VS+D+R +Q G +FVA+VG K DGH ++ QA GA A++ S Sbjct: 17 PQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQAGAIALITSRP----- 71 Query: 82 FSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138 + ++ P +V++T R + L A + + NI + +TG+ GK+S + Sbjct: 72 ----LETDLPQWIVNDTLRAYQDLGA---WWRQQVNIPVIGITGSVGKTSTKELI----- 119 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-H 197 +G+ Q T ++F +N + P K L L+ V +E + G + Sbjct: 120 -AGILGTQGKVLKTEANF--NNEIGVP------KTLLNLTPDHDFAV-IEMAMRGPGEIA 169 Query: 198 RLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 RL I + G TN+G HI +++A AK L E +PK+S A++ AD+ + Sbjct: 170 RLAEIAQPTIGIITNVGTAHIGRLGSREAIAKAKCELL-EFMPKDSVAMLNADNEL---L 225 Query: 257 MKRAHNAGC-RVLSVGYQ-----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 M A LS G+ G++I QV ++ D F PL G+ Sbjct: 226 MATAATVWSGETLSYGFSQGDLTGEYIA---------PDQVKVA----DQVFPVPLAGQH 272 Query: 311 QVYNALVAAGLCIAIG 326 N L A G+ +G Sbjct: 273 NALNYLAALGVMQVLG 288 >gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 417 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 166/389 (42%), Gaps = 60/389 (15%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V +D+R G +F+A+ G+ D H +I QA GA AIV + + + P Sbjct: 25 DVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGAVAIVANKP---------VNNQLP 75 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 LVVD+T+ L+ AS H +NI +A+TG++GK++ + + I + Q Sbjct: 76 TLVVDDTQIALNTIASW----HLKNIKPIVIAITGSNGKTTTKNMLANIL------NLQA 125 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + +N L P + L+ + + A+ G H + Sbjct: 126 PTLKTQGNL--NNHLGVPMTL-----LTLEEQHQYAVIEMGANHLGEIAHLCSLVNPNIA 178 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN +D H + F+ ++ E+ S I+ D ++ +V + G + Sbjct: 179 IVTNT----LDAHIGEFGGFDNLVKAKGEIYSNNSHNIVNTQDTFTGDV---SFGKGGDI 231 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + K ++ K I+ KQ++++++ L G + NAL A+ A+GI Sbjct: 232 ----FASKLVNNKFDLNIY-KQKISVTLN---------LIGTHNIENALAASTCAYALGI 277 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386 D L+ + LE GR E + N++ RI D Y +S LK ++ SG IV Sbjct: 278 DINLIKQGLEVTKAEHGRLEVI--NTKKFRIIDDTYNANPHSTTTALKALQDF-SGEKIV 334 Query: 387 VFGC----GGDRDQGKRPIMGKIALDLAD 411 V G G D ++ I G++A AD Sbjct: 335 VLGAMRELGNDSEELHLKI-GQLAKKSAD 362 >gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 453 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + S++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVL------SYK 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 T +F +N + P L L V++ E GL Q IK + Sbjct: 134 YKVFKTKGNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter propionicus DSM 2379] gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pelobacter propionicus DSM 2379] Length = 469 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 155/379 (40%), Gaps = 51/379 (13%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R +++ VS+DSR + AG +FV + G + DGH FIPQ A+G A++ Q F Sbjct: 19 RSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAAVLAD-----QSFDGE 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I ++ V +T L A+ + ++ +TG++GK++ + I + Sbjct: 74 IPPGLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTKEMLATILE------- 126 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 Q GP ++ +N + P ++ A S G + + S G +D + + Sbjct: 127 QTGP-GLKTAGNLNNLIGLPQMLFRLDA-----SHGWAVLEMGMSEPG----EIDRLAEV 176 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL---LPKESPAIIYADDAYSKEVMKRAHN 262 A T + + H R EL LP AII ADD + + Sbjct: 177 AAPQTGIVLNACPAHLESMGSVEGVARAKGELLLRLPAGGCAIINADDPL---IAGQPSP 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLP----GEFQVY 313 G R L+ G + ++ ++ + G+ F + + P+ G VY Sbjct: 234 PGVRRLTFGLGDADVRATEIT--------SLGIGGQSFLLHLGEIVLPVVLWSYGRHAVY 285 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEM 371 NAL AA +GI + L+ LE+ RF+ GG + +D ++ +N S+E Sbjct: 286 NALAAAAAAHGLGIAAELIQSGLERFRPYDKRFQL---EDVGGLVLIDDSYNANPASMEA 342 Query: 372 ILKNIRTIT-SGRIIVVFG 389 L + + GR V G Sbjct: 343 ALTTLGELKGGGRAFVALG 361 >gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus 16] Length = 452 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 9/123 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + IN VS+D+R I+ G +FVA+VG + D H F A+ GA A++VS A Q Sbjct: 20 NDAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNAVEAGATALLVSRALDTQ----- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 TP L+V +T+ L ++ +A+TG+ GK++V V I G F Sbjct: 75 ----TPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLF 130 Query: 146 QIG 148 G Sbjct: 131 TAG 133 >gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium modesticaldum Ice1] gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium modesticaldum Ice1] Length = 461 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 10/220 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++Q+ +A A + F E L + ++ ADD +E+ +R RV++ Sbjct: 180 TNIEADHLDHYQSFEAIVEAFYQ-FTERLSGDGILLLCADDPLLQEMAQRV--TARRVVT 236 Query: 270 VGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + K + + C Q E + + +PGE + NAL A IGI Sbjct: 237 YGMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVPGEHNMSNALAAVACADLIGI 296 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 A L + V RF+ +G ++G + DYAH ++ L R GR++ V Sbjct: 297 PFAAAAAALSRFGGVGRRFQRMG-EAKGVSVVDDYAHHPTEVKATLAAARQTQPGRLVAV 355 Query: 388 FGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP 425 F R R + + A D AD+ ++++ P E P Sbjct: 356 FQP--HRYTRTRDLYREFGEAFDAADVVVLSEIYPAGEAP 393 >gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 452 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 41/330 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V++D+R + AG +FVA+ G + D H F QA GA A++VS + Sbjct: 20 QDLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKLDI------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P +VV +TR A+ + + ++A+TG+SGK+SV I + G + + Sbjct: 74 ---DLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGNTLY 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +N + P + L + + A+ G + + Sbjct: 131 TAGNL--------NNDIGVPMTL-----LRLTHEHEYAVIELGANHQGEIAWTVSLTRPE 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEV 256 A NL H++ + AK ++ LP + AI+ AD+ S++ Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPDDGIAIMNADNNDWLNWQSIIGSRKT 236 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + NA + + IH+ + + T++ D + L PLPG + NAL Sbjct: 237 WRFSPNAA----NSDFSATNIHVTS-----HGTEFTLTTPTGDIEVLLPLPGRHNIANAL 287 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 AA L +A+G A + L L VPGR Sbjct: 288 AAAALSMAVGASHAAIKAGLANLKAVPGRL 317 >gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia tasmaniensis Et1/99] Length = 453 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 44/328 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV++D+R AG +F+AI G + D H F+ A+ G ++VS ++ Sbjct: 24 IAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVTAGCSGLLVSQRLPVE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VV +TR L A+ + + I+A+TG+SGK+SV I ++ G + + G Sbjct: 75 VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKTSVKEMTAAILRQCGETLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207 +N + P + K + +E ++ D+ + D ++ Sbjct: 135 L--------NNDIGVPLTLLRLKPQHQ-------YAVIELGANHQDEIAYTTDLVRPETA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 NL H++ + AK +F LP AII +D H G V Sbjct: 180 LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWPHWQSALH--GKTV 236 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEFQVYNALVA 318 +F ++ + VT+S +G F D PLPG + NAL A Sbjct: 237 W------RFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAA 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + L +++G + V + L L VPGR Sbjct: 291 SALALSVGAPLSAVCQGLSTLKAVPGRL 318 >gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii ACICU] gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2] Length = 466 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + L Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSVNFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermocrinis albus DSM 14484] Length = 441 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 82/376 (21%), Positives = 152/376 (40%), Gaps = 66/376 (17%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +DSR ++ G +FVA+ G K DGH F+ +A +GA +VV ++ Sbjct: 20 EVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVER-------EVPVKE 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSG 141 LVV+++ K L A ++ + G++GK++ + S V ++C+ Sbjct: 73 GKFALVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVCKTPK 132 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLD 200 + QIG ++++F +D AK ++ L+ + HV V Sbjct: 133 NYNSQIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRV------------- 179 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 T++G +H++ + E + ++ A++ + A+ V + Sbjct: 180 --------ITSIGEEHLETFGCLDDVILGNGEILEG-MREDHVAVLPSYVAHCYRVERAV 230 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNA 315 LS Q + ++VEG F + P+P V N Sbjct: 231 LFGEGTPLSA------------------QDLKLTVEGVRFVVKGKEIFLPVPSLALVENI 272 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L + G+ A+G+D +L+ L V GRF T S G +D ++ +N L + K Sbjct: 273 LCSLGVMEALGVDWTTLLDKLTTFRPVEGRFR---TLSVMGATIIDDSYNANPLS-VKKA 328 Query: 376 IRTIT--SGRIIVVFG 389 I +++ G I V G Sbjct: 329 IESLSLMEGHRIAVLG 344 >gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Kangiella koreensis DSM 16069] Length = 465 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 88/376 (23%), Positives = 167/376 (44%), Gaps = 41/376 (10%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + IN+V +DSR +F+A+ G DGH F+ +A QGA+A++V Sbjct: 17 LQGSDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVEH------- 69 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + SN P ++V +T K L L A + + ++ +TG++GK++V V I ++ G Sbjct: 70 --LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVASILRQKG- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200 +T +F +N + P + K + G H+ A L + + Sbjct: 127 -----NLLATQGNF--NNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCASLAKPDVS 179 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 I N+ HI+ + + AK +++ L +E A+I D ++ + +++ Sbjct: 180 VI-------NNVEAAHIEGFGSVEGVAKAKSEIYQA-LSEEGTAVINLDSNFADQWIEQF 231 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGEFQVYN 314 AG + ++V + C + V +++ + P+PG V N Sbjct: 232 --AGLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSN 289 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD--YAHTSNSLEM 371 ALVAA L A G D ++ LE + V GR +F N G + +D Y + S++ Sbjct: 290 ALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKAAN---GALIIDDTYNASVASVKA 346 Query: 372 ILKNIRTITSGRIIVV 387 + + +++ +++V+ Sbjct: 347 AIDYLTSLSGTKVLVL 362 >gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 452 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G A + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus cereus E33L] Length = 458 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V T+S Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329 >gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii SL3/3] Length = 460 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 25/231 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR ++ G IFVA G + DGH F +A+ QGAE +VV+ + I Sbjct: 28 VTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNHPVP------GVPEEKAI 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L D+ + + A+ HP+ ++ VTG+ GK++ + LS F T Sbjct: 82 LCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALSGF----GET 131 Query: 153 ISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210 I + Q+N L P + L L S V SH + RL + G T Sbjct: 132 IKTEGNQNNELGMP------RTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIIT 185 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +G HI +Q+ AK+ + LP+ +P ++ DD + ++ AH Sbjct: 186 CIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPFLRKAALPAH 235 >gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio sinaloensis DSM 21326] Length = 452 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 9/123 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I +VS+D+R I+ G +FVA+VG + D H F A+ GA A++VS A Sbjct: 20 QDVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASNAVEAGASALLVSKA--------- 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + +TP L+VD+T+ L ++ +A+TG+ GK++V V I G F Sbjct: 71 LDCSTPQLLVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKTTVKEMVASIMMNKGQVLF 130 Query: 146 QIG 148 G Sbjct: 131 TAG 133 >gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermobifida fusca YX] Length = 470 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 151/366 (41%), Gaps = 53/366 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR G +FVA+ G++ DGH F A+ GA A++ S + P L+V Sbjct: 34 DSREAAPGSLFVALRGSRVDGHDFAEAAVRAGATAVLCSRPV-----------DAPHLLV 82 Query: 96 DN----TRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 D L+ A + + P+ +I+ VTG+SGK++ + Q QR IGPT Sbjct: 83 DGGDDAVVAALAKLARAVVAELPDADIIGVTGSSGKTTTKDLLAQTLQR-------IGPT 135 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAG 207 + SF +N + P + A Q +++E ++ G+ H G Sbjct: 136 VAPPGSF--NNEIGHPLTVLRAD-------QTTRFIALEVAARGVGHIAHLCQIAPPRIG 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ ++ AK L E L + A++ ADD V+ A Sbjct: 187 VVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADD---DAVIGMASRTAA 243 Query: 266 RVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV+S G + + I L + + + T+++ L G QV+NAL A Sbjct: 244 RVVSYGLAPDADVRAEGIALDE----RGRPRFTLAIGEDTAPVSLRLVGTHQVHNALAVA 299 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 + +G + L + V R+ T G V+ A+ +N S+ L+ + Sbjct: 300 AVLRELGEPVTAIAAALSEAGPV-SRWRMEVTERPDGVTIVNDAYNANPESMSAALRTLA 358 Query: 378 TITSGR 383 T+ SGR Sbjct: 359 TLASGR 364 >gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi 1DA3] Length = 454 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V T+ N Sbjct: 24 IESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQK---------TLNVN 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +++ L A+ ++ +A+TG+ GK++V V I Q G F G Sbjct: 75 VPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133 >gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate ligase [Yersinia pestis D182038] Length = 127 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 48/84 (57%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AIV + D S Sbjct: 19 ERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVAE 78 Query: 87 RSNTPILVVDNTRKFLSLFASRLY 110 P++ + N + LS A + Y Sbjct: 79 IHGVPVIYLRNLNQHLSTLAGQFY 102 >gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1] Length = 456 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 93/411 (22%), Positives = 163/411 (39%), Gaps = 65/411 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A V AY Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATLSEHPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + +IG T+ +D + G H+ Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +++ A C+++ G I L ++ N + + D P+ G++ Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + G+ + + +L + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +IL+ TI + GR + V + + + G + L + IVTD Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter radioresistens SK82] Length = 468 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 142/346 (41%), Gaps = 30/346 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ I + +DSR +AG F+A+ G + D H F+ Q + +G + +V L Sbjct: 34 EQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDKGCQVAIVERPLDLDMMQ--- 90 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 LVV +TR+ L + ++P+ ++A+TG+SGK++ + I R Sbjct: 91 ------LVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR------ 138 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + PT ++ +N L P + L + + + AS G + ++ Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELTAEHQYAVMELGASHQGEIDYTSQLVQPQ 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ ++ AK ++ + K+ ++I A D ++ + Sbjct: 192 VAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT--T 248 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 RVLS G +G I+ ++ + Q + + P G V NA A +AI Sbjct: 249 RVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALAI 307 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 GI ++ LE GR F+ S +++D + +N M Sbjct: 308 GISLDDIVIGLELAQGAKGRLNFI---SHKQHLFIDDTYNANPTSM 350 >gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 459 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 43/321 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + ++ V+ DSR + G +FVA+ G + DGH F P A+ GA A++ + Sbjct: 23 QTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAARPL-------- 74 Query: 86 IRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P ++VD+ L +A + + +++A+TG+SGK+S + Q+ QR+G + Sbjct: 75 ---DVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGATV 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F G SF +N + P A A + H+ VE + G Q + + Sbjct: 132 FTQG------SF--NNEIGLPITALEATADTR-------HLVVEMGARG--QGHIAYLTQ 174 Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVM 257 I G+ N+G H + AK L E LP E+ A++ ADDA + Sbjct: 175 ITPPRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEA-LPSEAEGGVAVLNADDARVAAMS 233 Query: 258 KRAHNAGCRVLSVGYQ-GKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 R RV++ G + ++ V + T+ D + GE QV NA Sbjct: 234 ARTK---ARVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNA 290 Query: 316 LVAAGLCIAIGIDSALVLEHL 336 L AA + A G+D+A + + L Sbjct: 291 LAAAAVAEAAGMDAAQIGKAL 311 >gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 25/323 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R ++ G ++V I G + DGH F+ +AI GA A + +Q+ A N P+ Sbjct: 30 VSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESGAVATLWKR--DVQNPPA----NMPV 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V++T + L + A + ++ VTG++GK+S V + + F++ T Sbjct: 84 IFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKDIVTSLLA----TKFKVQKTE- 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +F +N + P I L+ + + + SS G + + A TN+ Sbjct: 139 -GNF--NNHIGLPLTI-----LNLEEDTEIAVLEMGMSSRGEIEFLSKLARPNAAIITNI 190 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+ ++ A AK+ + L +E +Y D + R V ++ + Sbjct: 191 GEAHLMDLGSRDAIAEAKLEIVTGL--QEGGVFVYNGD--EPLLTNRVPKMDLAVETITF 246 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSA 330 + ++ + T +D + LF LP G+ VYNAL + + G+ Sbjct: 247 GDARANDYYPTSVTLQATGTHFTMNRDENVLFYLPVLGKHNVYNALASMAIAKYFGVTWE 306 Query: 331 LVLEHLEKLHVVPGRFEFVGTNS 353 + + L L + R E V TNS Sbjct: 307 EMKQGLVTLQMTGMRMEVVKTNS 329 >gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S] gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S] Length = 473 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGNSEWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTLAV---VTNIDPEHLDHYGSFDKVKDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 E +P A++ D + ++ R + R+++ G+ + I + V I + + Sbjct: 206 VENVPFYGAAMLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVQPIPGGNRFDV 263 Query: 294 SVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +D P+PG V NA+ A G+ + +GID A + K V RF Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFT 323 Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 VG + GG + DY H ++ +L R GR+I V Sbjct: 324 KVGEIAVGGGSATVIDDYGHHPVEIKAVLAAAREGAKGRVIAV 366 >gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp. SG-1] Length = 458 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 82/354 (23%), Positives = 146/354 (41%), Gaps = 33/354 (9%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N LS F ++ I VS DSR I+ G +F+ G K DGH F+ AI GA + Sbjct: 17 NDLSAF----QDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSGA------A 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 A + PI++V+N+ + L A+ + ++ +TG++GK++ V Sbjct: 67 ASLWEKDVPNPPEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKDMV-- 124 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGL 194 + L S + T +F ++ L+ L+ + T V+V E G Sbjct: 125 ----ANLLSLKYKVQKTQGNFNS----------HIGLPLTILALEKGTEVAVLEMGMSGF 170 Query: 195 DQ-HRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + +L I L A TN+G H+ +++ AKM + L ++ + Y ++ Sbjct: 171 GEIEQLSNIALPDAAIITNIGESHLQDLGSREGIATAKMEIISG-LKEDGLFVYYGEEPL 229 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 KE + + G + L V + ++ E D + + P+ GE V Sbjct: 230 LKERIDKDWKFKVETFGKGTENTLYPL-DVKTTDSGSVFKVNAE-PDTEVMLPVLGEHNV 287 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 NAL + + ++ + E ++L + R E + RG +I D + S Sbjct: 288 MNALASMLVAKEFDVEYKEMPEAFQQLKLTQMRMEMM-EGKRGEKILNDAYNAS 340 >gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG] gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF] gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp. Tu6071] gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp. Tu6071] Length = 470 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%) Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271 H +Y ++ Y + FE + K P +I AD ++E+ +R + A RVL+ G Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYG 245 Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + KV +VT+S+ GK F +PG +NA+ A +++G+ Sbjct: 246 SAEDADVRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L V R + G + G ++ YAH + L+ +R GRI+VVF Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364 Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432 ++ GK MG+ AL LAD ++V D P EDP E + +E+ Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407 >gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense MSR-1] Length = 112 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR + G +F A+ G+K DG FIPQA+AQGA IV + + +A Sbjct: 18 ITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVVIVAETGTQAETGTAL---- 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAV 120 ++ VDN R+ +L A+ L+G+ PE + A+ Sbjct: 74 --LVTVDNPRRAYALAAAPLHGRQPEVMAAI 102 >gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase (EC 6.3.2.15) [imported] - Buchnera sp. (strain APS) gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 455 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 INE+ D++ I G +F+A++G K D H+FI A+ + A V I+ + Sbjct: 24 INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V+NT L A + K ILA+TG+ GK+SV I +++G Sbjct: 75 VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126 >gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] Length = 469 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%) Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271 H +Y ++ Y + FE + K P +I AD ++E+ +R + A RVL+ G Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYG 245 Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + + KV +VT+S+ GK F +PG +NA+ A +++G+ Sbjct: 246 SAEDADVRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L V R + G + G ++ YAH + L+ +R GRI+VVF Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364 Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432 ++ GK MG+ AL LAD ++V D P EDP E + +E+ Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407 >gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 458 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 INE+ D++ I G +F+A++G K D H+FI A+ + A V I+ + Sbjct: 24 INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V+NT L A + K ILA+TG+ GK+SV I +++G Sbjct: 75 VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126 >gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino-pimelate-D-alanyl-D-alanine ligase [Synechocystis sp. PCC 6803] Length = 454 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 124/307 (40%), Gaps = 45/307 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN + +D+R + +G +F+A+ G DGH FIPQA+ GA A+V ++ T+ Sbjct: 29 RINNICTDTRSLVSGDLFLALRGESFDGHSFIPQALTAGAIAVVTDR--PVEGLGETVAQ 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +V++T A+ + I+ VTG+ GK++ + + + G Sbjct: 87 ----FLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSVGKTTTKELIAAVLSQFG------- 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIA 206 R + I + K L LS + VE + G Q L D K Sbjct: 136 -------NVHKTRANYNNEIGVPKTLLELSPDHDFAI-VEMAMRGRGQIALLADIAKPTI 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G HI ++ A AK L P ES AI+ D+A E +R + Sbjct: 188 GLITNVGTAHIGLLGSELAIAEAKCELLAH-QPPESTAILNRDNALLMETAQRFWQG--K 244 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGL 321 ++ G +G +H +V+G++ PL G N L A + Sbjct: 245 TITYGLEGGDVH--------------GTVDGENLILDGVSLPLPLAGVHNASNYLAAIAV 290 Query: 322 CIAIGID 328 +G+D Sbjct: 291 AQCLGLD 297 >gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 458 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 INE+ D++ I G +F+A++G K D H+FI A+ + A V I+ + Sbjct: 24 INEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQK---------NIKPH 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P ++V+NT L A + K ILA+TG+ GK+SV I +++G Sbjct: 75 VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTASILRKNG 126 >gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli NC101] Length = 452 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 133/333 (39%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-- 179 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 180 -----LVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA F H + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA--------NSDFTATNIYVTSHGT-EFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii SDF] gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii] Length = 466 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio sp. Ex25] gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. Ex25] Length = 454 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +FVA+VG + D H F QA+ GA A++V + N Sbjct: 24 IDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVDAGAGALLVQKHLDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T+ L AS ++ +A+TG+ GK++V V I Q G F G Sbjct: 75 VPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133 >gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 471 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 42/237 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA VG + DGH + + GA A++ S + P Sbjct: 31 VVRDSREAVPGSLFVAFVGERADGHDYARAVVETGAVAVLGSRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG---- 148 +VVD+ ++ L A + + ++A+TG++GK+S + Q+ + + F G Sbjct: 80 IVVDDVQRALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRTKAPTVFTPGSLNN 139 Query: 149 ----PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 P + +S+ A+ L + ++G+ H+ L R+ Sbjct: 140 EIGLPLTALSATAETRFLVL-----------EMGARGIGHIRYLTE---LTPPRI----- 180 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 G N+G HI ++ AK L E L P E A++ ADD Y K + R Sbjct: 181 --GLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAMAAR 235 >gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus amyloliquefaciens DSM 7] Length = 456 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 76/371 (20%), Positives = 145/371 (39%), Gaps = 50/371 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + I ++D+R ++ +F+ + G +GH F+PQA +G A+ L D S Sbjct: 22 FEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKGVSAV-------LWDRS- 73 Query: 85 TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--- 137 N P +++VD+T + L A + ++ VTG++GK++ + + Sbjct: 74 --EPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKDMLHAVLGTQ 131 Query: 138 ----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSH 192 + +G + IG T+ + +D + A+ + +LS +V Sbjct: 132 YRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEPEAAV----- 186 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 TN+G H+ +++ AK+ + L +E + Y + Sbjct: 187 ----------------ITNIGESHMQDLGSREGIAEAKLEIINGL--REDGVLFY----F 224 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E + R CR + G +G L+ ++ +++ D F P+ G V Sbjct: 225 GDEPLLREKAYTCRTTTYG-EGADNDLRLKEIKQGEEGTYFTIDSIDRSFFIPVLGRHNV 283 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA+ A I GI L +L V R E V T + + Y + S++ Sbjct: 284 MNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAA 343 Query: 373 LKNIRTITSGR 383 ++ I T+ R Sbjct: 344 IELIETMKGYR 354 >gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 442 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 52/374 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + + VS DSR +++G +FVA+V + DGH ++ QA+ +GA A++V + Sbjct: 17 QIDSKIVTGVSFDSRKVKSGDLFVALVA-ENDGHDYVQQALTKGATAVLVDDRHQ----- 70 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141 I S P ++V +T L+L Y +H N ++A+TG++GK++ S Sbjct: 71 --IDSKIPAIIVSDT--LLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA------SA 120 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLD 200 + Q T +F +N + P L+ L+ T V V G+D+ +L Sbjct: 121 IMGSQYKTFKTPENF--NNEIGVP--------LTLLTMPDDTEVLV--VELGMDRPGQLT 168 Query: 201 GIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + + T +G HI++ +T++ AK+ + + L + + + Y + + Sbjct: 169 TLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLLTNAQ 228 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +K+ V + G K I+ I Q F PL G + + NAL Sbjct: 229 VKQ------NVQTFGQDIKDINSSSSKTIFTYQNTR---------FAIPLLGRYNIMNAL 273 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A I + I+ E L+ + R E + T S G + D Y ++ +L Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQL-TTSHGVNLISDVYNSNPTAVAAVLAT 332 Query: 376 IRTITSGRIIVVFG 389 ++ I + VV G Sbjct: 333 LKIIPATHKYVVLG 346 >gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis Re117] gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis Re117] Length = 465 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 34/328 (10%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 E I+A+ GT GK++ S + + G SF +G + I S + L + S ++A+A Sbjct: 113 EKIVAIAGTHGKTTTTSLTAHMLKTIGTRPSFAVG--ANIPSLGTNAELGSGS-YFVAEA 169 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + S +R D I + TN+ DH+D++ T A A + Sbjct: 170 --------------DESDASFLNYRPDVIIV-----TNVEADHLDHYGTADAVHQAFVD- 209 Query: 234 FEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F +LLP++ I ADD + + + RA + RV + G+ + Sbjct: 210 FAQLLPEDGLLICCADDEGANNLARKMRAARSDIRVQTYGFSDHADRRLSQAQATEDGRF 269 Query: 292 TISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 T ++E G+ +PG+ + NA A + I G++ L+ L RFEF Sbjct: 270 TATIEWGSGESRILDLAVPGQHNLLNAAAALAVGIDAGLEVQEALDALSSFSGAARRFEF 329 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG-GDRDQGKRPIMGKIA 406 G + R+Y DYAH ++ L RT+ +GR+ VVF R Q + A Sbjct: 330 KG-EAGAVRVYDDYAHHPTEVQAALTAGRTVAGNGRLHVVFQPHLFSRTQEFYRQFAQ-A 387 Query: 407 LDLADIAIVTDDNPRSEDP-EKIRAEII 433 L LAD V D P E+P E + +E+I Sbjct: 388 LSLADSVAVLDIYPAREEPIEGVNSELI 415 >gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii SH046] Length = 469 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 42/355 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q +I + +DSR +AG F+A+ G + D H FI Q QG + +VS Sbjct: 31 QAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQGCQVAIVSQP------- 83 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L + ++P+ ++A+TG+SGK++ + I R Sbjct: 84 --IDAEVCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 I PT ++ +N L P + L + + AS G + + + Sbjct: 139 ----IAPT-LVTRGNLNNDLGVPVML-----LELHPEHQYAVMELGASHQGEIDYTSNLV 188 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + + N+G H+ + AK ++ + P + + ADD ++ + + Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADD-FADSIRQAVQT 247 Query: 263 AGCRVLSVGYQGKF----IHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 +VLS G G+ I L+ A N Q V P GE V NA Sbjct: 248 E--QVLSFGAGGEIFATEIELQAQSATFKLNTPQGVRQVN-------LPFAGEHNVQNAT 298 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 AA +AIGI ++ LE+ GR F+ +G + +D + +N M Sbjct: 299 AAAAFALAIGISLDDIVLGLEQAVGAKGRLNFI---QQGRHLLIDDTYNANPTSM 350 >gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Acinetobacter baumannii TCDC-AB0715] gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acinetobacter baumannii 6014059] Length = 466 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFL---QKAPHLFIDDTYNANPTSM 350 >gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC 49989] Length = 464 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 47/283 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKAL 174 +A++GT GK++ S V I L++ + PT + D N S ++ +A Sbjct: 112 IAISGTHGKTTTTSMVSLI-----LNNAKKDPTILVGGNLSDINGNLKIGKSEYFVTEAC 166 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 Y+ S VE N+ DH+DY + + R F Sbjct: 167 EYMDSFLNLRPKVEL-------------------ILNIDSDHLDYFDDIE-HIAKSFRAF 206 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLK-------KVCAI 285 EL+PK+ I Y + + K +K N S G Y + I K+C Sbjct: 207 AELVPKDGLVIGYDANPFVKAALKNVSNVVTFGFSRGSDYVAEDIEFDHQGLPSFKIC-- 264 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 N + V +V+ K +PGE + NAL AA +G+D + + L + + R Sbjct: 265 -NGENVVANVKLK-------IPGEHNIQNALAAAACTHTLGVDGSDIENTLNEFSGINRR 316 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 F+ VG ++ DYAH +E L + + R+ +F Sbjct: 317 FDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKKMKHNRLWCLF 359 >gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 477 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 90/385 (23%), Positives = 155/385 (40%), Gaps = 26/385 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++I ++ P I +S DSR G F AI G++ DGH + A+A GA +V Sbjct: 9 DMIAAMAGRPFGTLPEGITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMAMANGASLLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VV++ L + I+AVTG+ GK++ Sbjct: 69 VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + SG ++++SF +N P + LA+ + + GV V + + Sbjct: 125 LRHVLAPSGKVH------ASVASF--NNHWGVP--LTLAR-MPEDTDYGVFEVGM--NHP 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + I+ T + H+ + + AK +FE L P ++ D+ Sbjct: 172 GEVRPLVAMIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPG-GHVVLNRDNDQ 230 Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A + G + S G K L + + +++ G+ + PG Sbjct: 231 FNFLDRTAQSLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRH 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSL 369 NAL A G+ +G D +E L L GR + + GG +D ++ +N Sbjct: 291 IAENALAALGVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPA 350 Query: 370 EM-----ILKNIRTITSGRIIVVFG 389 M +L GR I V G Sbjct: 351 SMRAAIALLAASEPTGRGRRIAVLG 375 >gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia exigua ATCC 700122] Length = 473 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 77/309 (24%), Positives = 133/309 (43%), Gaps = 28/309 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ ++ DSR ++ G F+A+ G + DGH F AIA GA ++V+ Q + + Sbjct: 26 RVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFAREA 85 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I V + ++ LS AS + +++ VTG+ GK++ Q+ S + Sbjct: 86 GCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVL------SARFK 139 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAG 207 ST +F +N L P + A + + VE G Q RL + Sbjct: 140 TESTKGNF--NNELGLPLTVLTAP-------KDCEALVVEMGMDGRGQIARLAAVARPER 190 Query: 208 S-FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--G 264 + TN+G H++Y T++ AK + E L E A + AD ++ +++ A A G Sbjct: 191 AIITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERG 250 Query: 265 CRVLSVGYQGKFIHLKKVCAI------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RV+ G +G H V A + + +G+ L G V NA A Sbjct: 251 IRVVRFGGEG---HASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGA 307 Query: 319 AGLCIAIGI 327 A + ++ G+ Sbjct: 308 AAIGLSYGM 316 >gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552] Length = 450 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 82/374 (21%), Positives = 152/374 (40%), Gaps = 54/374 (14%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I S DSR + G +++ I+G + DGH FI A GA A++ S + D Sbjct: 21 QEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENGASAVI--SGRDIDD------ 72 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 S I+ V +T K L A L ++ +TG+ GK+S V + ++ Q Sbjct: 73 SEHIIIKVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRDMVYSVIKQ------QY 126 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T ++ +N + P I K + G+ H+ ++ + +IA Sbjct: 127 KTLKTEGNY--NNAIGLPLTILRLKDEQVMVLEMGMNHLK-----------EMEELSMIA 173 Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + TN+G HI +++ AKM + + I +D S + R + Sbjct: 174 CPDISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTVEVGRLN- 232 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVY 313 ++ VG + K V +S EG F+F + P+PG+ V Sbjct: 233 ----LIRVGIDNG-VDFK-------ANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVM 280 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL+A + + + I ++ +++ + R + V + I Y + +S++ + Sbjct: 281 NALIAIAIGLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLIDGTYNASEDSMKSSI 340 Query: 374 KNIRTITSGRIIVV 387 + T T +I V+ Sbjct: 341 DVLATYTRRKIAVL 354 >gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Aminobacterium colombiense DSM 12261] Length = 468 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 92/405 (22%), Positives = 161/405 (39%), Gaps = 47/405 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHL 58 MK Q D E SI W E I + ++DSR ++ G FVAI GN EDGH Sbjct: 1 MKWQLWKVSDLAE-----SIGASWWGEDIILPDFFTADSREVRPGAAFVAIRGNAEDGHD 55 Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 +I A+ QGA I+ Q S IR I V D+ + ++ L P+ ++ Sbjct: 56 YIKDALHQGASLIIAEKGRIPQGLS--IRDRAVIEVNDSVVDLARMASAYLSACLPDEVI 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+TG+ GK++ +++ F+ P F + T + +L+ L+ Sbjct: 114 AITGSVGKTTTREVLKK--------CFEGMPL----VFGAEKSFNT----LIGCSLTILA 157 Query: 179 SQGVTHV---SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 T+V + + G + + T + H++ T + AKM + Sbjct: 158 MPAGTNVLILEMGTNKPGEIEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITR 217 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-----IHNKQQ 290 P I AD+ + + C+ + VG + + ++C + N + Sbjct: 218 S--PHLKTLIFNADNENLANAAGQVYGT-CKKIGVGVRKGEV---RICQSTFDLVENLPR 271 Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + ++ +D D L G + + A L +G L +LE + +PGR Sbjct: 272 LKTTIRWEDGVISDLYCGLWGTHNSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGR 331 Query: 348 FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TSGRIIVVFG 389 T R G + +D ++ +N S++ L T+ GR + + G Sbjct: 332 VFST--RAGAVIIDDSYNANPSSMKASLNTFSTVEVKGRKLAILG 374 >gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 452 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPRGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G + L L VPGR V + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTTIKAGLATLKAVPGRLFPVQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Ames] gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany l-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CNEVA-9066] gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A1055] gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Western North America USA6153] gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Kruger B] gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Vollum] gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Australia 94] gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus anthracis CI] gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. Ames] gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0488] gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0193] gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0442] gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0389] gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0465] gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0174] gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis Tsiankovskii-I] gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus NVH0597-99] gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus AH820] gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB102] gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. CDC 684] gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BGSC 6E1] gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus anthracis str. A0248] gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V T+S Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329 >gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia ruckeri ATCC 29473] Length = 431 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 148/340 (43%), Gaps = 28/340 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV++D+R + AG +FVA+ G + D H F AIA GA A++VS + + Sbjct: 2 ITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSK---------RLLVD 52 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TR L FA+ + + P N++A+TG+SGK+SV I ++ G + G Sbjct: 53 VPQIVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAG- 111 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + A+ G + D + A Sbjct: 112 -----NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALV 159 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVL 268 NL H++ + AK +F LP AII AD +S AH R Sbjct: 160 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGIAIINADSHDWSHWQTTLAHKQVWRFS 218 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +G + + + T+ PLPG V NAL AA L I++G D Sbjct: 219 PLGGEDIDFYATDLRIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGAD 278 Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN 367 V L +L VPGR F V + G++ +D + +N Sbjct: 279 LDAVRVGLSQLKAVPGRLFPLVLAD---GKLLLDDTYNAN 315 >gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis F0319] Length = 826 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 30/366 (8%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +E I+ V +DSR + +F A+ + DGH +IP+ A+G VV + D Sbjct: 20 KEANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEV---VPDNW 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T+ S + L V + + L A R + I+ +TG++GK+ V ++ Q L Sbjct: 77 ETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSNGKTMVKEWLYQ------LL 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q+ T + S+ ++++ P ++L L+ + GV + S G D I+ Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVWL---LNENTQVGVFEAGI--SKPGEMMALRDIIQ 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSKEVMKRAH 261 G FT+LG H + + +A K+ LF + + AI+Y+ DD + + + + Sbjct: 184 PTIGVFTSLGTAHQENFPSIEAKCKEKLCLFHD-----TQAIVYSMDDDVLTHCLAQYNY 238 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAG 320 S + ++K + + VT + +G K+ + P + V N++ A Sbjct: 239 QGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFIDDASVENSITCAV 298 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377 + + +G+ A + E + +L V R E V G + D Y NSL++ L N R Sbjct: 299 VALHLGVTQAALAERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDYNSLDIALDFMNRR 357 Query: 378 TITSGR 383 GR Sbjct: 358 PDHKGR 363 >gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712] Length = 825 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 86/406 (21%), Positives = 164/406 (40%), Gaps = 37/406 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 E++ L + ++ +I EVS DSR + +F A+ G DGH ++ + QG Sbjct: 15 EILRILDCKACEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVRN 74 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 VV+ + S VVD L A+ G+ ++ +TG++GK+ V Sbjct: 75 FVVTGLRA----GFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIVK 130 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 ++ Q+ P S + ++++ P LS L T +++ + Sbjct: 131 EWLYQLLSDE--------PGIYRSPRSYNSQVGVP--------LSLLGMDVSTRLAIIEA 174 Query: 191 SHGL--DQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPA 244 L + +L I+ G FT+LG H + +++Q K LF + ++ +E A Sbjct: 175 GISLPGEMGKLQAMIRPEIGIFTHLGDAHGENFESRQQKLAEKAILFRDCRCIIGREGEA 234 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + Y +V K +G + + +++ + +++ V + E F Sbjct: 235 LDYIASRLRPDVKKMIWGSG--------KNATVRVEEKGSTAHERLVAVGYEHVAFTLSI 286 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 P P E N + A + + GI + E + +L + R E +R I Y Sbjct: 287 PFPDEASFENCMNAVCVLLLEGISPVFIAERVARLQPLAMRMEIKDGINRCVLINDYYNS 346 Query: 365 TSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDL 409 + S ++ L + +GR +V+ D G+R + ++AL L Sbjct: 347 DAASFQLALNTLAMQDAGREKVVILSDFVDTGTGERELYREVALLL 392 >gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806] Length = 454 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 130/308 (42%), Gaps = 47/308 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +++DSR I++G F+A+ G+ +GH FI AIA+GA A++V Q S SN Sbjct: 30 VSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAIARGAAALIVD-----QPVSVNYSSN 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+ +V NT K A + ++A+TG+ GK++ + + G Sbjct: 85 IPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTTTKELIASVLATRGKVH----- 139 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIA- 206 T++++ +N + P K L L TH S +E G + I L+A Sbjct: 140 -KTLANY--NNEIGVP------KTLLELDE---THDSAVIEMGMRGRGE-----IALLAQ 182 Query: 207 ------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 TN+G HI ++ A AK L E S A++ D E KR Sbjct: 183 IAQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESP-SSSIAVLNYDHPLLTETAKRV 241 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ G+ G I + + T+ V G DF+ PL G N + A Sbjct: 242 WQG--ETITYGFFGGDIVGELL------DLTTLRVNGLDFN--LPLSGRHHALNFMAALA 291 Query: 321 LCIAIGID 328 + +GID Sbjct: 292 VAKILGID 299 >gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 150/372 (40%), Gaps = 34/372 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I G F AI G++ DGH + A+A GA ++VS A A R Sbjct: 26 ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMAMANGASLLIVSEAR----LPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ L + I+AVTG+ GK++ ++ + SG Sbjct: 82 VPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKTTTKEMLRHVLSPSGKVH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++++SF +N P + LA+ + + GV V + + G + + I+ Sbjct: 137 -ASVASF--NNHWGVP--LTLAR-MPEDTDYGVFEVGM--NHPGEIRPLVAMIRPDVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T + H+ + + AK +FE L P + +D ++ + + A + G + Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNF-LDRTAQSLGIEHIH 247 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S G K L + + +++ G+ + PG NAL A G+ +G Sbjct: 248 SFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGA 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEM-----ILKNIR 377 D +E L L GR G R G +D ++ +N M +L Sbjct: 308 DMQKAIEALATLRPEKGR----GKRHRLVIGGGSFTLIDESYNANPASMRAAIALLAASE 363 Query: 378 TITSGRIIVVFG 389 GR I V G Sbjct: 364 PTGRGRRIAVLG 375 >gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 452 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 41/330 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I+ V++D+R + AG +FVA+ G + D H F QA GA A++V+ + Sbjct: 20 QDLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKLDI------ 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + P +VV +TR A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 74 ---DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +N + P + L + + A+ G + + Sbjct: 131 TAGNL--------NNDIGVPMTL-----LRLTKEHDFAVIELGANHQGEIAWTVSLTRPE 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEV 256 A NL H++ + + AK ++ LP AI+ AD+ S++ Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPDNGIAIMNADNNDWLNWQSIIGSRKT 236 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + + NA + IH+ + + T++ + L PLPG + NAL Sbjct: 237 WRFSPNAA----DSDFTATHIHVTS-----HGTEFTLNTPTGGIEVLLPLPGRHNIANAL 287 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 AA L +A+G + L L VPGR Sbjct: 288 AAAALSMAVGATHDAIKTGLANLKAVPGRL 317 >gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria polysaccharea ATCC 43768] gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria polysaccharea ATCC 43768] Length = 445 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 114/253 (45%), Gaps = 32/253 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV---- 165 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +E SS L+ + ++ A + N+ DH+D + Y + K ++F Sbjct: 166 ------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIF 211 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + ++ ADDA+ + MKRA + S+ ++ F ++ + + I+ Sbjct: 212 R----GDGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGTLKQGDEDLIA 265 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + PL G N + A LC A+G+ +LEH++ +P R E +G + Sbjct: 266 TQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG--EK 317 Query: 355 GGRIYVDYAHTSN 367 G +++D + +N Sbjct: 318 NGVVFIDDSKGTN 330 >gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus thuringiensis str. Al Hakam] gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus 03BB108] Length = 458 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V T+S Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329 >gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 445 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 129/308 (41%), Gaps = 53/308 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +DSR +Q G +FVA+ G + DGH FIPQA+A+GA A++ + F Sbjct: 26 VQAICTDSRQLQPGSVFVALRGERFDGHNFIPQALARGAVAVISQRPVAGPHFQ------ 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V +T A + P +++A+TG++GK++ + R G Sbjct: 80 -----VSDTLAAYQRIARGWREQFPPSVVAITGSAGKTTTKEMLAAALSRYG-------- 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGS 208 + + S A N + I +A+ L + + V +E + G + RL + + Sbjct: 127 -TVLKSEANHN-----NDIGVAQTLLQMRPEH-QFVVLEMAMRGPGEIRRLAQMAQPTHA 179 Query: 209 F-TNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPKESPAII-YADDAYSKEVMKRA 260 T++G HI ++ A AK L +E LL E P ++ A +S + + Sbjct: 180 LITHIGTAHIGRLGSRAAIAAAKCELLQELGQGVALLNGEDPLLLSTAASLWSGQTLTYG 239 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + G +G++ + Q T++VEG PLPG N + Sbjct: 240 LDQG------DLRGEW----------DPQAQTVTVEG--LTLPVPLPGRHHALNWMGVLA 281 Query: 321 LCIAIGID 328 ++G+D Sbjct: 282 ALRSLGLD 289 >gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga maritima MSB8] Length = 426 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 106/454 (23%), Positives = 187/454 (41%), Gaps = 73/454 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ ++ G +FVA+ G + DGH FI +A+ GA AI+ T+ S+ I +V Sbjct: 12 NSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAE--------RKTVNSDR-IFLV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +++ L+ A G ++ VTG+SGK++ + + + + S Sbjct: 63 ESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F + T + L+ L+ + + + + AS G H N+G Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSA 169 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 H+++ T++ KM + + KE+ A+ DD ++ + R N L G +G Sbjct: 170 HLEFFGTRERIMETKMEIIKH--SKENAIAVTLFDDPDLRKEVPRYRNT----LFFGKEG 223 Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGIDS 329 LK TI+ E + FD LF L G + Q+ N +AA LC+ + Sbjct: 224 GDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRTLGE 277 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGR 383 + + L L VPGRF + G + VD + ++ S+E +L+ G+ Sbjct: 278 TVDIFDLASLKTVPGRF---NVREKKGVLIVDDTYNASPEAFQTSIEALLR-----FPGK 329 Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKI 428 V G G+R + +G+ L++ D V P +S+DPEKI Sbjct: 330 KFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYVFLSEPEAEWIKSKKIILKSDDPEKI 388 Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 ++ + + K +R I +EM K+ Sbjct: 389 AKDLATRVKKGDVVLFKASRAVRIERVLEMFEKE 422 >gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 9/126 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 ++ + ++ VS+D+R I +G +F+A++G D H FI QA+ +GA A++VS + Sbjct: 17 LKGEDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVIKGAAALIVSQKLQI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 TP ++V++TR L S ++ +A+TG+ GK++V + I + G Sbjct: 74 ------TTPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKTTVKEMLTSILSQKGQ 127 Query: 143 SSFQIG 148 F G Sbjct: 128 VLFTQG 133 >gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] Length = 492 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 43/298 (14%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA+ + K + I AVTGT+GKS+V +F QI Q++G+ +F G T S A Sbjct: 118 FAAEAFPKAVK-IAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFKF 176 Query: 165 PS--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRD 215 PS P Y A L E SS+ L+ + GSF+ NL D Sbjct: 177 PSDDPPYQAAVL-------------EVSSYQLE---------LPGSFSPSVGVILNLSPD 214 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H++ H++ + Y K RLFE + + I +AD+ K K +N+G + + G Sbjct: 215 HLERHKSMENYGETKCRLFERMDSSKLSIIPHADEFLRKVAYK--YNSGS---TKAWLGA 269 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIA--IGIDSAL 331 ++ V + + + +L L G NA A+ L +A +G+D Sbjct: 270 LPGVQLDSQARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHK 329 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + + +L +P R + VG + + G ++++ + +N ++ I+ + + +++ G Sbjct: 330 LQAAIGQLTPLPHRMQIVGQDKK-GVLWINDSKATN-VDAAYTGIKGLADRKAVILLG 385 >gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus epidermidis W23144] Length = 451 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 78/372 (20%), Positives = 162/372 (43%), Gaps = 36/372 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + IN VS DSR I G +F+ G DGH FI QA+ GA A+ +S ++ Sbjct: 20 KYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENR 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + PI+ V++T L A ++AVTG++GK++ ++ + + Sbjct: 75 YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H+++ + Sbjct: 131 EFKVKKTQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELL 176 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 IA TN+G H+ +++ AK + L K + IY D+ K + Sbjct: 177 SNIAQPDIAIITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHV 234 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + +A +++S+G + + + N + + ++ K+ + P+ G + NA + Sbjct: 235 TQVKDA--KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAI 290 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +G++ ++ ++ + + R E +++ I Y + S++ + + Sbjct: 291 AIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL- 349 Query: 378 TITSGRIIVVFG 389 ++ GR I++ Sbjct: 350 SVMKGRKILILA 361 >gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 457 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+E++ +S I +F+A++G + DGH F QAIA GA+A++V+ L + Sbjct: 24 IHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIAAGAQALLVNHHILL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P L+V +TR L + A + K ++A+TG+SGK+SV I + G Sbjct: 75 VPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKTSVKEMTTSILKECG 126 >gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Finegoldia magna BVS033A4] Length = 454 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 51/353 (14%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K EL N +I ++ + + +S+D+R IQ +F+A+ G+ DG +I A +GA Sbjct: 7 KTITELTN--TIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64 Query: 69 EAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 VV+ Y ++ D+ P++ VDNT++F+ A ++A+TG++GK+ Sbjct: 65 SCCVVNRDYRNINDY--------PVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKT 116 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T Q N + I L+K + + T V+V Sbjct: 117 TTKDIMSSLLKE----KYKVVKT-------QKNY---NNEIGLSKTIFDIDDD--TEVAV 160 Query: 188 -EASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 E + + R + IA TN+G H+ +T++ AK + E L ++ Sbjct: 161 LEMGTENFGEIR--QLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKFEILEG-LKEDG 217 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE 296 I+ DD +EV K+ + + ++ G Y+ + I + + T S+ Sbjct: 218 IFILNNDDPILREV-KQEYKLPEKNITFGIKPDSDYRMEMIKADETGS-------TFSI- 268 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 D F L G Q+YNA ++ + +G+D + + + L+ + + R E + Sbjct: 269 -NDHVFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELI 320 >gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alanyl-D-alanyl ligase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 454 Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 162/382 (42%), Gaps = 37/382 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV+ D+R + G +FVA+ G + DGH F A+A GA A++VS + Sbjct: 25 ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLLVA--------- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G Sbjct: 76 APQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG- 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + A+ G + D + + Sbjct: 135 -----NFNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALV 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 NL H++ + AK +F LP AII AD + HN R Sbjct: 183 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNKRVWRFA 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 +G + V T+ PLPG + NAL AA L +++G Sbjct: 242 PLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAAALAMSVGAS 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386 A V E L +L VPGR + G++ +D ++ +N S+ + + + R++V Sbjct: 302 LAAVREGLTQLPAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMV 359 Query: 387 VFGCGGDRDQGKRPIMGKIALD 408 V GD + +G+ A+D Sbjct: 360 V----GDMGE-----LGETAVD 372 >gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA] gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA] Length = 874 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 92/388 (23%), Positives = 156/388 (40%), Gaps = 37/388 (9%) Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 + LY P NI +++TGT+GK++ + + G + +G TST + D + Sbjct: 465 IVNMLYNDRPYNIPVISITGTNGKTTTTRVISHTLSKMG---YCVGMTSTSGIYINDECI 521 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYH 220 + A + L + V +E + G+ + L TN+ DH ID Sbjct: 522 DSGDDTGFDSAKAVLLNHDVDVAVLETARGGMIKKGLAYDLADVAVITNIREDHLGIDGV 581 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + + K L E + ++ ++ ADD +SK ++ R A S + Sbjct: 582 DSMEELCYVK-SLVGEAVKEDGYVVLNADDYWSKSILNRIK-ANIIFFSKDSNNPLLKQS 639 Query: 281 KVCAIH---NKQQVTISVEGKDF------DFLFPLPGE--FQVYNALVAAGLCIAIGIDS 329 K+ I + +S +GK++ + L G+ F + N L G + +GID Sbjct: 640 KISNISVYLENDDIVVSNKGKEYVICGIKEVPITLDGKLTFNIENILAICGALVGMGIDY 699 Query: 330 ALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 ++ +L H GRF N G + +DY H + +L ++ I SG + Sbjct: 700 CMIKNGITTYLLNSHKNSGRFNCYDIN--GINVILDYGHNIDGYNSVLSAVKEINSGMLY 757 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KG 443 V G GDR G +GKI+ D IV +D + AE+I + G E G Sbjct: 758 GVIGIPGDRTNGTAKEIGKISSKYLDYIIVKEDKDLRGRKQGEVAELI--VDGITEDSDG 815 Query: 444 NRIEAI-------RTAIEMLNKQDVLVV 464 + E I A+ M + D ++V Sbjct: 816 KKYEVILSEEDAFEKALNMAKRGDTVIV 843 >gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens CPE str. F4969] Length = 456 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ +A +GA+ AIV L + + Sbjct: 27 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAFNKGAKIAIVDEVKCDLNE----L 82 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 83 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 138 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 139 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 181 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 182 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 236 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 237 SLPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 296 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L + R E + + G I D Y + +++ + + Sbjct: 297 GIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 354 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 355 KNIEGKRRIAVLG 367 >gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris SK11] Length = 440 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 62/381 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +N++ DSR I+ G IF+ + G + DGH FI A GA ++S FS Sbjct: 20 QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 +LV DN F +L A K ++AVTG++GK++ + + + Sbjct: 69 EKEVEQAHLLVDDNLAAFQTL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKT 127 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG TI +D + G+ H L Q Sbjct: 128 YKTQGNHNNEIGLPYTILHMPEDTE-------------KLVLEMGMDHPGDIDFLSQLAQ 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----LFEELLPKESPAIIYADDAY 252 L I LI G H+++ +++ KM L EL+ P I +A+ Sbjct: 175 PELALITLI-------GEAHLEFMGSRENIAKGKMGITAGLHGELIAPADPII----NAF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E ++ G G+ + + K+ I +K+++T D P+PG++ Sbjct: 224 IPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDESITIPVPGKYNA 273 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 NA++AA + + G+ A + L+++ + R E+ + G + D Y ++ + Sbjct: 274 TNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRTEW-NKSKNGADLLSDVYNANPTAMRL 332 Query: 372 ILKNIRTI---TSGRIIVVFG 389 IL+ + I +GR I V Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353 >gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria mucosa ATCC 25996] gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria mucosa ATCC 25996] Length = 445 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 72/328 (21%), Positives = 140/328 (42%), Gaps = 55/328 (16%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRESKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVD-------------YAHTSNSLEMILKN---------IRTITSGRIIVVFG 389 + G +++D A N L +IL +RT +G+ VF Sbjct: 316 -EKNGVVFIDDSKGTNVGATAAAIAGLQNLLFVILGGMGKGQDFTPLRTALAGKAKGVFL 374 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD 417 G D Q +R + G L++ D A + + Sbjct: 375 IGVDAPQIRRDLDG-CGLNMTDCATLEE 401 >gi|309802501|ref|ZP_07696607.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] gi|308220901|gb|EFO77207.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium dentium JCVIHMP022] Length = 289 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 35/299 (11%) Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 H T + YF K RL + ++ AD + +M+ A +AG +V L Sbjct: 1 HPTFEDYFRCKRRL----IANSRSLVLGADCDHRDLLMQDAADAGIKVTEFALHDAARGL 56 Query: 280 KKVCAI------HNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI-DSAL 331 + NK +SV G D + + GEF V NA A + I G+ +S Sbjct: 57 TSPAQVIARVDPENKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDP 116 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTI--TSGRIIVVF 388 + + ++ V PGR E V G +Y+D+AH S++ ++ +RT RI +V Sbjct: 117 SIAAMCRVQV-PGRMERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVS 174 Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-------------RAEIIHG 435 G G + +R + K AL + I T D+P EDP I R +I+ Sbjct: 175 GTTGGKAVDRREGIVKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVP 234 Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 IEK AI A E ++ ++++V GKG ET +I+ D ++R +LG Sbjct: 235 RELAIEK-----AIADAREHADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 288 >gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 05ZYH33] gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis 98HAH33] Length = 457 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 84/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + N+V DSR + G +FV + G + DGH FIP A G +V S SL Sbjct: 25 YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLSEVSL----- 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------- 137 + P ++V++ L A+ K ++AVTG++GK++ + + Sbjct: 77 ----DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHDVLATTYKTY 132 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + +IG T+ D + G H+ D H Sbjct: 133 KTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIH 171 Query: 198 RLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 L I + S L G H+++ +++ K+++ + + P S +I AD K Sbjct: 172 LLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPG-SKLLIPADPIADK-- 228 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + +H ++ G Q L+ + +K +T +V D D P+ G++ NA+ Sbjct: 229 LLPSH---VDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAM 282 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 VA+ + +G+ + L L++ R E+ + G I D Y ++ +IL+ Sbjct: 283 VASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADILSDVYNANPTAMRLILET 341 Query: 376 IRTITS---GRIIVVFG 389 +I + G+ I V Sbjct: 342 FTSIPANEGGKKIAVLA 358 >gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ4037] Length = 454 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +FVA+VG + D H F QA GA A++V + N Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRLDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T+ L AS ++ +A+TG+ GK++V V I Q+ G F G Sbjct: 75 APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133 >gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01] Length = 457 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN VS+D+R ++ G +FVAIVG++ D H F QA+ A A++V L N Sbjct: 28 INAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEANASALLVERKLDL---------N 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV++T+ L ++ ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 79 ITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAG 137 >gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 452 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 458 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G +++ I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V T+S Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329 >gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168] gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168] Length = 459 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 91/377 (24%), Positives = 153/377 (40%), Gaps = 57/377 (15%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ I +GA+ IV+S+A + + V + L + +A+ Sbjct: 58 PENI-KGADMIVISTAIPEDNSELQAARKAGLPVYGRAQMIAKLMEDK-------KTIAI 109 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 +GT GK++ S V I + + ++ PT + + +YL K +++ Sbjct: 110 SGTHGKTTTTSMVATILKEN-----KMDPTVMVGGVLNN----IGGNVYLGKGEYFVTE- 159 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + S L G+ + TN+ DH DY+ +++ N + F +PK Sbjct: 160 ------ADESDGSLLYFDPSGVVV-----TNIEFDHHDYYDSKEKLLNT-FKEFVNKIPK 207 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + AI+YA+D ++++ N RVL+ G I+ K+ AI+ + G + Sbjct: 208 DGKAIVYAEDDNIRKILD---NEDRRVLTYG-----INAGKLKAIN----INTLPFGSYY 255 Query: 301 DFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + ++ +PG V N+L A + + +G+ + E L K + V RFE G Sbjct: 256 NLVYGERVLGEIRLQVPGVHNVLNSLAAVAVGMYVGLSFTDIQESLGKFYGVHRRFEKKG 315 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408 I DYAH ++ LK R RII +F R R M + A D Sbjct: 316 LID-SILIIDDYAHHPTEIKATLKAARNTGYERIIAIFQP--HRYSRTRHFMEEFAKCFD 372 Query: 409 LADIAIVTDDNPRSEDP 425 D IVTD SE P Sbjct: 373 DVDHLIVTDIYSASEKP 389 >gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis SC84] gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis BM407] gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus suis P1/7] gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14] Length = 453 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 84/377 (22%), Positives = 154/377 (40%), Gaps = 55/377 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + N+V DSR + G +FV + G + DGH FIP A G +V S SL Sbjct: 21 YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFENGC--VVTLSEVSL----- 72 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------- 137 + P ++V++ L A+ K ++AVTG++GK++ + + Sbjct: 73 ----DVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTKDMIHDVLATTYKTY 128 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + +IG T+ D + G H+ D H Sbjct: 129 KTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIH 167 Query: 198 RLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 L I + S L G H+++ +++ K+++ + + P S +I AD K Sbjct: 168 LLSEIAKPSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPG-SKLLIPADPIADK-- 224 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + +H ++ G Q L+ + +K +T +V D D P+ G++ NA+ Sbjct: 225 LLPSH---VDLIRFGEQAD---LQVTSLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAM 278 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 VA+ + +G+ + L L++ R E+ + G I D Y ++ +IL+ Sbjct: 279 VASYVGKTLGVPDEAIKSALASLNLTRNRTEW-KKAANGADILSDVYNANPTAMRLILET 337 Query: 376 IRTITS---GRIIVVFG 389 +I + G+ I V Sbjct: 338 FTSIPANEGGKKIAVLA 354 >gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 458 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 21/330 (6%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ G + A+ ++ F P+ G+ VYN L + + Sbjct: 240 IAETVTFGDARANDYYPTTVALQATGTHFKMNRDENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ + + L L + R E V T+S Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia akari str. Hartford] Length = 449 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 85/372 (22%), Positives = 153/372 (41%), Gaps = 47/372 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH + AI +GA A++VS + D Sbjct: 23 NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITD-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-----SGLSSF 145 IL+VD+ + L A +A+TG+ GK+S ++ + Q +G +F Sbjct: 75 KILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNF 134 Query: 146 Q--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G ++S A D + G+ H G + + +K Sbjct: 135 NNYLGLLINLASMADDMEYA-------------ILELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMKRA 260 TN+ H+++ + + AK +FE K A+I AD + YSK ++K Sbjct: 175 PNIAVITNISEAHLEFFNSLEEIAEAKCEIFEN-FSKNDIAVINADTNCYSKILSILKNL 233 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVA 318 + RV + G H + V H QV + + K + P N V Sbjct: 234 YID--RVYNFGILHN-THAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVV 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIR 377 + +G D + HL ++ GR + + N + R+ DY + S S++ L+ ++ Sbjct: 291 LLIIDILGKDIEIAANHLANIYPTKGRGDII--NIQNARVICDYYNASPKSMQAALEYLK 348 Query: 378 TITSGRIIVVFG 389 + + + G Sbjct: 349 QVMAENKTAIIG 360 >gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Staphylococcus lugdunensis M23590] Length = 452 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 84/392 (21%), Positives = 166/392 (42%), Gaps = 42/392 (10%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + KI V+ DSR +Q +F+ G DGH F+ Q+I GA A + Q+ Sbjct: 20 QFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSIQDGAAAAFYQTG---QEID 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 +++ P++ V +T L A ++AVTG++GK++ ++ + + + Sbjct: 77 SSLEEQ-PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKTTTKDMIESVLK----T 131 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGI 202 F++ T +N + P L+ L T +S+ E G H ++ + Sbjct: 132 QFKVKKTQG----NYNNEIGMP--------LTILELDYDTDISILEMGMSGF--HEIELL 177 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 IA TN+G H+ ++ AK + L K++ IY D E + Sbjct: 178 SSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGL--KDNGIFIYDGD----EPLL 231 Query: 259 RAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYN 314 + H A +++SVG + + VC I + Q I+ + + + P+ G + N Sbjct: 232 QPHVAQVKHAKLISVGLEQNNTY---VCTIDSNQNDGIAFNINNTEHYELPILGVHNMRN 288 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A +A + +G+ ++ +++ + + R E T + I Y + S++ + Sbjct: 289 AAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASID 348 Query: 375 NIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404 + + +I+++ C GD Q +G+ Sbjct: 349 TLSNMEGRKILILADCLELGDNSQHMHEEIGE 380 >gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus cereus W] gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 458 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 IAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + E L L + R E V T+S Sbjct: 294 SMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDS 329 >gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sinus F0268] Length = 434 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 66/343 (19%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++++ DSR +FV I G K+DGH FIP AI GA I ++ +D S + Sbjct: 12 VDKIILDSREDCTKGLFVPIKGEKQDGHRFIPMAIEHGASFI-----FTEEDCSELSKEY 66 Query: 90 TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRS 140 + + V++T L + ++ VTG+ GK++ + + + + + Sbjct: 67 PEVRFISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETK 126 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G ++ Q+G T+ S A++N+ S I L +S G H E +S + Sbjct: 127 GNANSQLGLPITLFSMAKENK--EISVIELG-----ISIPGEMHRIGEIASCDI------ 173 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 FTN+G H++ +T++ KM + E KE + DA + + Sbjct: 174 ------AVFTNIGSAHLENLKTKENTCFEKMHILEG-NQKEVSLYLPKKDAILGTLTEE- 225 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 ++ ++G+ G+ KK+ K+++ +SV PGE NA VA Sbjct: 226 -----KIRAMGFLGE----KKLNLFFYEKKEEIPLSV-----------PGEHMEDNASVA 265 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + +++G+ H +KL + G EF G RGGR+ + Sbjct: 266 MAIGLSLGL-------HKQKL--LQGLLEFQGLKGRGGRLSTE 299 >gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens NCTC 8239] Length = 453 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 82/370 (22%), Positives = 156/370 (42%), Gaps = 37/370 (10%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q R + I Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQIR--ELAEI 181 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 182 ASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LGALP 236 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 237 EAEYKIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLGIA 296 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + +G+ + L + R E + + G I D Y + +++ + I+ I Sbjct: 297 IAKELGVSFEEMKRGLNNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVIKNI 354 Query: 380 TSGRIIVVFG 389 R I V G Sbjct: 355 EGKRRIAVLG 364 >gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50] Length = 501 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 58/321 (18%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR QAG +F+ ++GNK DGH FI A+ + +SA + + S P + V Sbjct: 78 DSRKAQAGDLFIPLLGNKVDGHRFIEPAMER-------ASATLTSEHDNVVISEKPFIRV 130 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGLSSFQIG 148 D+T K L + G++ + VTG+ GK++ + + Q +G + QIG Sbjct: 131 DDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREMIAAAVGTGRHCFQTNGNENSQIG 190 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+S R+T + + S G + D ++ Sbjct: 191 VPMTLS------RMT--------------DGYDAAVIEMGISEPGQMEILSDIVRPSICV 230 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T +G HI++ +TQ+ + K+ + + + ++ DD +E+ + C+ L Sbjct: 231 VTMIGVAHIEFMKTQENIRDEKLSIVNH-MKENGLLLLNGDDPLLREI---KDDMSCQTL 286 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---------FLFPLPGEFQVYNALVAA 319 + G + +VC V +G +FD + + G+ V NAL Sbjct: 287 TFG-------IDEVCDFQG-SDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGI 338 Query: 320 GLCIAIGI---DSALVLEHLE 337 + +GI +A EH E Sbjct: 339 AVAYQLGIPMATAAKAFEHFE 359 >gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [unidentified eubacterium SCB49] Length = 427 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 156/365 (42%), Gaps = 47/365 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R I G +F A+ G +G+ F QA+ GA +V+ Q TI Sbjct: 16 ICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGETI------ 69 Query: 93 LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 + DN+ + L AS R Y P ILA+TG++GK++ + + + + T Sbjct: 70 -LTDNSLECLQKLASFHRQYLNIP--ILALTGSNGKTTTKELIHAVLSK------KFNTT 120 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206 +T + +N + P L+ LS T + VE ++ L + ++ + IA Sbjct: 121 ATKGNL--NNHIGVP--------LTLLSMTKETEIGIVEMGANHLKE--IETLCHIAQPN 168 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN G+ H++ + + K L++ ++ + + A+DA E+ K+ Sbjct: 169 YGYITNFGKAHLEGFGSLEGVIKGKTELYKHIVKSDGLLFVNANDAKQLELTKKE----- 223 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + G +G +K + A +++ IS +G+ + L G + +N A + Sbjct: 224 KRYTFGNEGNDCEIKLLEAT---KELIISYQGQSIN--SNLIGLYNYHNIAAAIAIGQYF 278 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384 + + V E +E+ R + + N G I +D Y +S+ L N + Sbjct: 279 KVSATKVKEAIEEYIPTNNRSQIIKQN--GHTIILDAYNANPSSMTAALDNFKQTVGNNK 336 Query: 385 IVVFG 389 I++ G Sbjct: 337 ILILG 341 >gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocystis sp. ATCC 49242] Length = 475 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 112/492 (22%), Positives = 202/492 (41%), Gaps = 81/492 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+ VS D+R ++AG +F AI G DGH F+ A +GA A V+ A++ +FS Sbjct: 26 REATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFEKGAAAAVIDEAHA-AEFSGA-- 82 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P+L+V + ++ L + R + I A+TG+ GK+S + + R G + Sbjct: 83 --GPLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTSTKDMTRLMLSRFGETH--- 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLI 205 ++++S+ +N+ P+ LA+ + S GV + + + GL ++ Sbjct: 138 ---ASVASY--NNQWGV--PLTLAR-MPAASRFGVFELGMNHAGEITGLVAQ----VRPH 185 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T + H+++ + + +AK +F L AII DDA + + A Sbjct: 186 VAVVTRVAAVHLEHFASVEGIADAKAEIFSAL--DGGVAIINRDDATYERLAAAAAPTAG 243 Query: 266 RVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + S G +G L I + +V + GK + PG+ N+L A + Sbjct: 244 HIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALLIAAV 303 Query: 325 IGID---SALVLEHLEKLHVVPGRFEFVGTNSRGGR----------IYVDYAHTSNSLEM 371 ID +AL L +F + RG R +D ++ +N M Sbjct: 304 FDIDVEKAALTLA------------DFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSM 351 Query: 372 -----ILKNIRTITSGRIIVVFG-------CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 +L GR I V G CG + + G++A+DLA D Sbjct: 352 RSAFELLGATTPGAGGRRIAVLGDMLELGPCGAE-------LHGELAVDLARAKC---DL 401 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479 + P + A + + P + +R RTA+E+ ++ ++ A + + V + + Sbjct: 402 LFTAGP--LMASLYYAAPNAMRAAHR----RTALEL---EEAVLAALRAGDVVMVKGSNS 452 Query: 480 KKMSVDCDIIRE 491 +MS +R+ Sbjct: 453 SRMSRIVAAVRQ 464 >gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae DGI18] gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA6140] gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA19] gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID24-1] gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID332] gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae SK-92-679] gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 1291] gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae FA19] gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID332] gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-92-679] gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 1291] gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae FA19] gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID332] gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-92-679] Length = 445 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Labrenzia alexandrii DFL-11] Length = 476 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 95/390 (24%), Positives = 161/390 (41%), Gaps = 35/390 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR ++ G F+AI G++ DGH ++ A+ GA +V+ +D + + Sbjct: 27 ITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAALEAGASLALVA-----EDSLGDLPDD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VVD+ + + + I+AVTG+ GK+ ++ SG Sbjct: 82 GRYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTGTKEALRLALAPSGKVH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAG 207 ++++SF +N P+ LA+ + + GV + + + L Q + +I Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPADTDFGVFEIGMNHAGEITPLVQMVRPHVAII-- 188 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR- 266 T + HI++ ++ + AK +F L P + AI+ D+ + A A R Sbjct: 189 --TTVEAVHIEFFESVEKIAQAKAEIFNGLEP-DGVAILNRDNKQYDLLRFLAATAAVRN 245 Query: 267 VLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + G G + HLK A + V S+ G+D + PG V N+L + Sbjct: 246 VQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLTAVADL 305 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTI 379 G D L + GR E + GG + +D ++ +N M +L Sbjct: 306 GADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLAQATLG 365 Query: 380 TSGRIIVVFG----CGGDRDQGKRPIMGKI 405 SGR I V G G D DQ + G I Sbjct: 366 GSGRRIAVIGDMRELGTDADQLHAELEGPI 395 >gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70] Length = 460 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 152/376 (40%), Gaps = 55/376 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S+D+R A +F A+ G D H ++ +A+AQGA A+VV A + + + Sbjct: 25 VENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVAQGANALVVERADT--------QIS 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L A + + LA+TG+SGK++V I Q + +G Sbjct: 77 VPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKTTVKEMTASILQSA------VGV 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLDG 201 + F Q N + I + L L+ Q G H A + GL Q Sbjct: 131 EQVL--FTQGN---FNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAYTTGLVQ---PN 182 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + L+ N+ H++ + + AK ++ L P + AII + Y A Sbjct: 183 VALV----NNVAAAHLEGFGSLEGVATAKGEIYRGLQP-DGVAIINKEHDYRS---TWAQ 234 Query: 262 NAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311 + G RV YQ A V G FD P LP GE Sbjct: 235 DIGAHRVQYFAYQDN-------TADFYADNVIFHEAGSTFDLCTPQGKTTIHLPYLGEHN 287 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 V NAL A+ L + +G A + + LE V GR V + Y +SL+ Sbjct: 288 VKNALAASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDNLLLLDDTYNANVDSLQS 347 Query: 372 ILKNIRTITSGRIIVV 387 ++ ++ + RI+VV Sbjct: 348 AIRVLQKYDAFRILVV 363 >gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pseudoxanthomonas suwonensis 11-1] Length = 471 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 71/363 (19%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ ++ D+R + AG +++A+ G + DGH F A+A+GA A++V L D A Sbjct: 24 VDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLVE---RLLDVDA----- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------ 143 P L+V+++ L+ A+ + ++A+TG++GK+SV + V + Q++G + Sbjct: 76 -PQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALVLSVLQQAGQAYANPGN 134 Query: 144 -SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASSHGLDQH 197 + +IG + +D IY A ++YL+ VS+ Sbjct: 135 RNNEIGLPLAVIDAPEDADFA----IYEMGAGKPGDIAYLTDIARPDVSL---------- 180 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253 + IA + D + T+ A + A LP A++ ADDA+ Sbjct: 181 ----VNNIAAAHLERMGDLLGVATTKGAIYAA--------LPAGGTAVVNADDAFGAWFE 228 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------- 305 +EV++ A G ++L G A + V EG F + P Sbjct: 229 QEVVRPA-GTGRQLLRFGLD--------ASAEVTARDVQAGAEGSRFVLVTPQGEAAIEL 279 Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG V NAL AA + +A G+ A + L + V GR V GG + VD ++ Sbjct: 280 ALPGRHNVRNALAAAAIGLACGVSLAAIAAGLGQARPVAGR--QVAHGLPGGVVLVDDSY 337 Query: 365 TSN 367 +N Sbjct: 338 NAN 340 >gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134] gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134] Length = 856 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 35/314 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + I SGL ++G T T + + R+ Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIRGERI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ + Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSF 574 Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271 T + K + + + P P ++ DA V AH+ G ++ Sbjct: 575 ISTVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGLVTFFAHDPGQPAMATHR 634 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324 QGK F+ + A ++ I + PL FQV NA+ + G A Sbjct: 635 AQGKRVVFVDGDHIVASEGDNEMRIPLA------EIPLTRNGTIGFQVENAMSSIGAAWA 688 Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +GID ++ L PGRF + RG + DY H ++++ + ++T+ Sbjct: 689 LGIDWNVIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAIQALCNAVQTMP 746 Query: 381 SGRIIVVFGCGGDR 394 + R +VV GDR Sbjct: 747 AKRRLVVISGAGDR 760 >gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AQ3810] gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus Peru-466] gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus AN-5034] gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio parahaemolyticus K5030] Length = 454 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +FVA+VG + D H F QA GA A++V + N Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVEKRLDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T+ L AS ++ +A+TG+ GK++V V I Q+ G F G Sbjct: 75 APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133 >gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae NCCP11945] gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria gonorrhoeae NCCP11945] Length = 445 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 3_1_27] Length = 607 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 54/379 (14%) Query: 2 KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53 K + LIY KDF E++ N+L IF ++ +I V DSR + G +F AI Sbjct: 164 KNETLIYENLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVIEGSLFFAI---- 218 Query: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 +G+ ++ + +GA ++V++ ++D ++ V +T + A++ K Sbjct: 219 NNGNSYVKDVLDKGA-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 269 Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++ +TG++GK++ V L S + T ++ +N + P + Sbjct: 270 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 316 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232 L+ + + + SS G + RL I + TN+G HI++ +T+ F AK Sbjct: 317 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 375 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L E + KE+ + DD Y V +G+ G H K NK Sbjct: 376 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKIGFNGNNTHKIKSYDFSNKGSKF 424 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I ++GK+++ L G+ + N +A L IG+ + + L+++ + RF+ + Sbjct: 425 I-LDGKEYE--MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 480 Query: 353 SRGGRIYVDYAHTSNSLEM 371 G IY++ A+ ++ + M Sbjct: 481 --GNDIYINDAYNASPMSM 497 >gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis VMC66] Length = 456 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 61/397 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYSLQDFSATIRSNT 90 DSR I +G +FV + G + DGH FIP A AQGA A V AY Sbjct: 32 DSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQGAAATLSERPVAEGAY------------- 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++VD+ A K ++LAVTG++GK++ + Q+ +S++ T Sbjct: 78 --ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA----TSYKTYKT 131 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 +N + P I ++ V H D H L + K G Sbjct: 132 QG----NYNNEIGLPYTIL------HMPENTEKLVLEMGQDHLGDIHLLSELAKPKTGIV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T +G H+++ ++ KM++ + L K+ I+ AD +++ A C+++ Sbjct: 182 TLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----KIVNEFLPADCKLVR 235 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLCIA 324 G I L ++ +++ ++S E +FL P+ G++ NA++AA + Sbjct: 236 FGPDSD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-- 381 G+ A + + +L + R E+ S G I D Y ++ +IL+ TI + Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETFSTIPTNP 346 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 GR + V + + + G + L + IVTD Sbjct: 347 GGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia rohdei ATCC 43380] Length = 450 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 135/328 (41%), Gaps = 42/328 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV+ D+R + G +FVA+ G + DGH F A V++ S + Sbjct: 20 EITEVTIDTRQVTGGCLFVALKGERFDGHDFAENA---------VAAGAGALLVSKRLLV 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G Sbjct: 71 GAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG 130 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +F D + P+ L L + + A+ G + D + + Sbjct: 131 ------NFNNDIGV----PLTL---LRLTPEHDFAVIELGANHVGEIAYTTDLSRPESAL 177 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 NL H++ + AK +F LP AII AD + H+ RV Sbjct: 178 VNNLSAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHHK--RVW 234 Query: 269 SVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVA 318 Q G+ I +V I+ + F PLPG + NAL A Sbjct: 235 RFSSQAGEDIDFF-------ASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANALAA 287 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A L +++G D A V + L +L VPGR Sbjct: 288 AALAMSVGADLAAVRQGLTQLQAVPGRL 315 >gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium bifidum PRL2010] gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase [Bifidobacterium bifidum PRL2010] Length = 519 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 103/427 (24%), Positives = 179/427 (41%), Gaps = 52/427 (12%) Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137 DFSA + P L+V++ RK +SL ++ YG+ P++ L V G T GK++ A F Q + Sbjct: 84 DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 139 Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 L++ G + SS ++ LTTP + + + + G+ ++ +E Sbjct: 140 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 195 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247 SS R+ G+ +F N+ DHI H T + Y K +++ ++ Sbjct: 196 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCK----RQIVCNSRALVLG 251 Query: 248 ADDAYSKEVMKRAHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 A ++ + + A +AG V + G ++ A H+ + I+ G Sbjct: 252 AASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEHSAYR--IAAGGA 309 Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNSR 354 D +F L G+F NA A + A GID A +E + + GR E Sbjct: 310 DLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQS 368 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411 VDYAH S+ +L + RI +V G G++ +R + + A D Sbjct: 369 NTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRID 428 Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVLV 463 I T ++ +E I E+ +PG +R A+ AI ++ ++++ Sbjct: 429 SFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNIIL 488 Query: 464 VAGKGHE 470 + GKG E Sbjct: 489 IIGKGDE 495 >gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5] gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5] Length = 454 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 82/360 (22%), Positives = 155/360 (43%), Gaps = 40/360 (11%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV+G+ GK++ S + +I +GL PT I + RL T + + Sbjct: 109 IAVSGSHGKTTTTSMIAEILINAGLE-----PTVIIG--GRLKRLGTNAKL--------- 152 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G VS S G + +I TN+ ++H+D+++ F FE+ Sbjct: 153 -GRGELLVSEADESDGSFLKLQPAVAVI----TNVDKEHLDFYEN----FERVKEAFEQF 203 Query: 238 L---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTI 293 + P A++ DD +++K++H RV++ G + K + + + + Sbjct: 204 MNSVPFYGFAVVNLDDPTLAQLVKKSHE---RVITYGINSPALVRAKNLYLKEGRYEFGV 260 Query: 294 SVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +GK+ + + G VYNAL A G+ + +G+ ++ + LE+ R E G Sbjct: 261 EFKGKELGRIHLGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKGY- 319 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLAD 411 + +Y DY H ++ ++ ++R + + ++VVF R + L D Sbjct: 320 YKNSPVYDDYGHHPTEIKAVINSLRDMYPDKNLLVVFQP--HRYSRTYYLFEDFVKVLKD 377 Query: 412 I--AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I IVTD P SE+ + AE + G + ++ E E+ ++ DV++ G G Sbjct: 378 IDKLIVTDIYPASENNVYGVSAEELARKSGAVFAKDKEEVFEKVREVHDEGDVILFLGAG 437 >gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae 35/02] gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae MS11] gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID18] gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae DGI2] gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 35/02] gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae MS11] gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID18] gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae DGI2] gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae 35/02] gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae MS11] gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID18] gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae DGI2] gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 445 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum ATCC 824] gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum ATCC 824] Length = 458 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 141/357 (39%), Gaps = 50/357 (14%) Query: 49 IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLS 103 + G+ +G I + GAE + + ++ + ++A I + P L+ + +S Sbjct: 37 VSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYAR-KNNIS 95 Query: 104 L-----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---S 155 L F L H NI A++GT GK++ S V I + PT + Sbjct: 96 LMTRAEFLGSLMKGHKYNI-AISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLD 149 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 N L S ++ +A Y +S L+ + G+ L N+ D Sbjct: 150 IINGNVLAGKSDYFITEACEYKASF-------------LEFYPYIGVIL------NIDAD 190 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+DY++ N + F L+PKE I ADD K V + A NA C V+S G Sbjct: 191 HLDYYKNIDDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNG 246 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSAL 331 I K + N+ + K + LF + PG+ + NAL A + + I Sbjct: 247 DIRAKNIS--FNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASALTLKISHKS 304 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +++ L+ RFE G G + DYAH ++ L + +I VF Sbjct: 305 IIDGLKSFKGTHRRFEIKGV-KNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVF 360 >gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 452 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G V L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas artemidis F0399] Length = 468 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 98/400 (24%), Positives = 165/400 (41%), Gaps = 33/400 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R +QAG +FVA+ G K DG F A+ GA A+++ S R + + Sbjct: 31 ITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMSGAV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T A K ++AVTG++GK++ G T Sbjct: 91 IGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRG------AVCRT 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGV-THVSVEASSHGLDQHRLDGIKL--IAGSF 209 +++ +N + P L+ L G T VE G Q G Sbjct: 145 AANY--NNEIGLP--------LTLLGMTGEDTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRVL 268 TN+G H++ + + AK L + P I+ ADDA + V RA A G R+L Sbjct: 195 TNVGETHMELLGSIENIARAKAELVAAIAPG-GIVILNADDA--RVVAMRAQAADGVRIL 251 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + + I + + + N+ + ++ G+ D+ PL G VYNAL A A+G+ Sbjct: 252 TYGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALAALAAGFALGL 311 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 + L +L R+E + G +++ A+ ++ S+ L+ + GR I Sbjct: 312 SPQEMQAGLSRLAPPKMRYEV---HHVGAWTFINDAYNASPASMRAALETTARLYPGRRI 368 Query: 386 VVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 V G G +G R + A + + I D R Sbjct: 369 AVLGDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEAR 408 >gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M04-240196] Length = 445 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC AIG+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum EA 2018] Length = 458 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 141/357 (39%), Gaps = 50/357 (14%) Query: 49 IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLS 103 + G+ +G I + GAE + + ++ + ++A I + P L+ + +S Sbjct: 37 VSGSDMNGSPMIDKLKEHGAEIYLGHNEKNINNVDIVVYTAAIPEDNPELIYA-RKNNIS 95 Query: 104 L-----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---S 155 L F L H NI A++GT GK++ S V I + PT + Sbjct: 96 LMTRAEFLGSLMKGHKYNI-AISGTHGKTTTTSMVSHIALTE-----DVDPTILVGGNLD 149 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 N L S ++ +A Y +S L+ + G+ L N+ D Sbjct: 150 IINGNVLAGKSDYFITEACEYKASF-------------LEFYPYIGVIL------NIDAD 190 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+DY++ N + F L+PKE I ADD K V + A NA C V+S G Sbjct: 191 HLDYYKNIDDIENTFAK-FVNLIPKEGYLIANADD---KRVARVASNATCNVVSFGIDNG 246 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSAL 331 I K + N+ + K + LF + PG+ + NAL A + + I Sbjct: 247 DIRAKNIS--FNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASALTLKISHKS 304 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +++ L+ RFE G G + DYAH ++ L + +I VF Sbjct: 305 IIDGLKSFKGTHRRFEIKGV-KNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVF 360 >gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus albus 8] Length = 454 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 33/312 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++S+D+R I G +F+A+ G DGH F QA+ GA A+V Sbjct: 24 EVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAVAVVTERPV----------D 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L+VD+T + L AS + ++ +TG+ GK++ + + + F+ Sbjct: 74 GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTTTKEMIWSVMSK----GFK-- 127 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAG 207 T+ + A N + + + K L L S V +H + R+ K Sbjct: 128 ---TLKTEANHN-----NEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMSTSCKPTVC 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI+ +Q+ AKM + + ++P I+ DD ++ + G R Sbjct: 180 VITNIGVSHIENLGSQEGILKAKMEILDG-ASADAPLILSRDD----RILSKVQVYGDRK 234 Query: 268 L---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + SV + ++ + A TI + GE V NAL A + A Sbjct: 235 IWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAFCVGAA 294 Query: 325 IGIDSALVLEHL 336 +G+D+A ++ L Sbjct: 295 LGMDNADIIAGL 306 >gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora tropica CNB-440] gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salinispora tropica CNB-440] Length = 471 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 155/376 (41%), Gaps = 57/376 (15%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V DSR + G +FVA G + DGH + AI GA A+ + + Sbjct: 28 GSVEFDSRKVGPGGLFVAFPGERVDGHDYAEGAIRAGAVAV----------LGTRVVAGV 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+++VD+ + L A + + P+ ++ +TG+SGK+S + + R +GP Sbjct: 78 PMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSGKTSTKDVIAALTAR-------LGP 130 Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIK 203 T + SF +N L P + + YL ++GV HVS + + + Sbjct: 131 TVAPPGSF--NNELGHPYTALQADPETRYLVLEKGARGVGHVS----------YLCEVVP 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 N+G HI +++ AK L LP E A++ ADD + R Sbjct: 179 PQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPAEGLAVLNADDDLVAAMATRTR-- 235 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV+ G + ++ V + +++ ++ EG+ L G QV N+L AA Sbjct: 236 -ARVVRYG-EAAEADVRAVDVVLDERGRPSFTLVTPEGR-APVRLGLTGRHQVSNSLAAA 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR----FEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373 + +G+ + L +L +V R FE V G +D ++ +N S+ L Sbjct: 293 AVARELGMPVTELATALGELGLVSSRRMDVFERV-----DGVTVIDDSYNANPASMAAAL 347 Query: 374 KNIRTITSGRIIVVFG 389 + + R I V G Sbjct: 348 RALAGFRRRRTIAVLG 363 >gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis OX99.30304] Length = 445 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ DDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNVDDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ KD PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 445 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 144/327 (44%), Gaps = 45/327 (13%) Query: 47 VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRK 100 VA +G DG +F + A++ G + + +S S + D A + N ++ D Sbjct: 43 VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEA-FKQNGGRVLGD---- 97 Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 + L A + + + ++A+TG++GK++V S V +C + GL + G T A+ Sbjct: 98 -IELLAD-IVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQ 155 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 R + +++ +E SS L+ + ++ A + N+ DH+D + Sbjct: 156 REGKKAGVWV----------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRY 197 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 Y + K ++F + ++ ADD + + MKRA + S+ ++ F + Sbjct: 198 DDLLDYAHTKAKIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLER 251 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + + + I+ + PL G N + A LC A+G+ +LEH++ Sbjct: 252 ETGRLKQGDEDLIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQ 305 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +P R E +G + G +++D + +N Sbjct: 306 GLPHRVEKIG--EKNGVVFIDDSKGTN 330 >gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus somnus 129PT] Length = 464 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 31/325 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +VS+D+R +F A+ G D H ++ QA+ QG A+VV + + Sbjct: 25 VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDV---------D 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145 P L+V +TR L A L K +A+TG+SGK++V AS +Q++ Q F Sbjct: 76 VPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVAQDPDAVLF 135 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +F +N + P + L S + + A+ G + +D ++ Sbjct: 136 TQG------NF--NNDIGVPLTL-----LRLESKHKFAVIELGANHQGEIAYTVDLVQPD 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVM-KRAHNA 263 N+ H++ + + AK +++ L + Y Y K+ ++ NA Sbjct: 183 VALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIMEYEHSVRYQKKYWYEQIGNA 242 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGL 321 R+ SV + + +++ Q T+ EG + P G V NA+ AA L Sbjct: 243 DTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREG-EIKINLPYLGLHNVSNAVAAASL 301 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346 + +G+ + LEK V GR Sbjct: 302 ALCLGVSLEQIKAGLEKKSYVKGRL 326 >gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea] gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella violacea DSS12] Length = 455 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 121/302 (40%), Gaps = 37/302 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VSSDSR I +FVA+ G+K DGH F A+ GA A++V L + T + Sbjct: 27 VSSDSRAIPEQTLFVALKGDKFDGHNFANTAVENGAIALLVDHELPL--------NITQV 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SGLSSF 145 +V D R L A P ++ A+TG++GK+SV V I + +G + Sbjct: 79 IVKDTQRAMGELGAYLKELIQPRSV-ALTGSNGKTSVKEMVATILSQRHKVLYTAGNFNN 137 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG T+ D+ GV + A+ G + +K Sbjct: 138 EIGVPLTLLRLEADDEF------------------GVFELG--ANHKGEIDYTSSLVKPD 177 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+ H++ + + +AK +F L P + AII ADD ++ ++ + + Sbjct: 178 VALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPTGT-AIINADDGFASVMLAASTDYTQ 236 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + +S + PLPG QV NAL A +C++ Sbjct: 237 LTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAATAICLSF 296 Query: 326 GI 327 G+ Sbjct: 297 GL 298 >gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum ATCC 27405] gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM 2360] gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20] gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum ATCC 27405] gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM 2360] gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20] gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM 1313] Length = 469 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 139/323 (43%), Gaps = 51/323 (15%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYG----KHPENILAVTGTSGKSSVASFVQQIC 137 ++A ++S+ P L + +L + L G K+P ++ AV+GT GK++ S + I Sbjct: 77 YTAAVKSDNPELAKAKSLGIPTLDRATLLGEIMKKYPFSV-AVSGTHGKTTTTSMISLIM 135 Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +S L + IG + + + R+ + + ++A+A Y+ S L Sbjct: 136 LKSALDPTIHIG--GELDAIGGNTRIGS-NKYFVAEACEYVESF-------------LKF 179 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 H + L N+ DH+DY + + NA ++ F L+P+ + ADD + Sbjct: 180 HPYLAVVL------NIEADHLDYFKDIEHIKNAFLK-FIRLVPENGYVVACADDQNVLSI 232 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFL----FP 305 +K H C +++ G K A+ + ++ + G KD + + Sbjct: 233 LKDVH---CNIITFGLNSK-------NAMWTAEDISFNENGFAAFTVLKDNERITNIQLK 282 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG + NAL + C A+G + + LE + RFE G + ++ DYAH Sbjct: 283 VPGIHNISNALASIAACYALGCSIENIKKGLESYTGIHRRFELKGIENN-IKVVDDYAHH 341 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 + ++ LK R+ RI VF Sbjct: 342 PSEIKATLKAARSGNYPRIWTVF 364 >gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium vaginae PB189-T1-4] gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium vaginae PB189-T1-4] Length = 506 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 29/203 (14%) Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 +A + N+ DHI++H + +AY AK ++F + L ++ AII DDAY + + +R G Sbjct: 190 VAAALLNITPDHIEWHGSMEAYAAAKEQIFAQ-LTADNLAIISRDDAYCRAIYERLCARG 248 Query: 265 CRVLSVG------------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 VL V + +H++ +HN+ V L GE + Sbjct: 249 VPVLCVSTGADPQTQQAAYVENNIMHIR----LHNRTYTLCDVRNTK------LQGEHNI 298 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM 371 N L A+ L + G D + + L + + R EFV +R G + +V+ + +N+ + Sbjct: 299 QNMLTASALALFAGADVQAITDVLLQFSTLEHRLEFV---ARIGDVDFVNDSKATNT-DA 354 Query: 372 ILKNIRTITSGRIIVVFGCGGDR 394 +R +G+I+V+ G G D+ Sbjct: 355 AQHALRVYDAGKIVVLLG-GHDK 376 >gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina NK-01] Length = 456 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 160/379 (42%), Gaps = 36/379 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I A +FVA+ G + DGH ++ + A+GA A +V + + P Sbjct: 28 VGTDSRTIAADQLFVALNGPRFDGHDYLAEVAAKGAVAALVEREVA--------NAPLPQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +TR L + ++ AVTG+SGK+SV + I R+GL+ + Sbjct: 80 LLVADTRVALGQLGALNRQAFKGSLAAVTGSSGKTSVKEMLASIL-RAGLNGAVLATRGN 138 Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +N L P + + + + + G HV A + L Q ++ I T Sbjct: 139 L-----NNDLGAPLTLLELVPEHRAGVIELGANHVGEIAYTVSLTQPQVAII-------T 186 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G H+ + AK + E LP + A++ DD +RA AG +VLS Sbjct: 187 NAGNAHVGEFGGPEKIVEAKGEILEG-LPSDGVAVLNLDDKAFVTWQRRA--AGRKVLSF 243 Query: 271 GYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + ++ Q T+ L GE V NAL A A+G+ Sbjct: 244 ALRDTRADFHGSDLARDERGCQGFTLRSPIGSARIQLNLLGEHNVANALAACAAAHALGM 303 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV 386 +++ LE L V GR V + G +D ++ +N + M +I SGR ++ Sbjct: 304 PLVAMVQGLESLQPVKGR--AVAQLAPNGVRVIDDSYNANPVSMCAAVDILAGFSGRTVL 361 Query: 387 VFGCGGD----RDQGKRPI 401 V G G+ +QG R + Sbjct: 362 VLGDMGELGEWAEQGHRDV 380 >gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 43/336 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++++ V DSR ++ +F+AI G + DGH+FIPQ I G A+ S +++ S Sbjct: 26 KEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIRDG--ALCALSEKRIENAS---- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V + + L A ++ VTG+ GK+S + + + Sbjct: 80 --YPYILVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTSTKEMIASVLGE------KY 131 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206 T +F +N + P I+ + V + + S+ G + RL I + Sbjct: 132 NVLKTAGNF--NNEIGLPLTIFNIR-----EEHEVAVLELGISNFG-EMERLAKIARPDI 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G H+++ +++ AK +F + P S I+ DD + + H A Sbjct: 184 CVITNIGVAHLEHLKSRDGILKAKTEIFLYMNPNGS-IILNGDD----DKLSTVHPAN-- 236 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317 G Q F L + Q + + G + F P +PGE V NAL Sbjct: 237 ----GIQPVFFGLDDSRDFYADQVESCGLRGTNAVFHTPNSTFSAHISIPGEHMVLNALA 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 A+G++ + +E L + GR + T+S Sbjct: 293 GIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDS 328 >gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. FRC-32] Length = 468 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 160/382 (41%), Gaps = 59/382 (15%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ VS+DSR + AG +FVA+ G++ DGH FI A+A+G +V +A SL + Sbjct: 21 KMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAKGVRTFLV-AADSLAARAPA-- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N + V T + L A+ K ++ +TG++GK++ + I Q Sbjct: 78 ENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTTKEMLATILG-------QT 130 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-----DGI 202 GP + + N L I L L ++ + V S + RL G+ Sbjct: 131 GP--GLKTSGNLNNL-----IGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIAEPGV 183 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261 +I +FT H+ + +A AK LF+ L K +Y ADD + + Sbjct: 184 GIITNAFTA----HLASMGSVEAVAKAKGELFQRL--KTGGVAVYNADDPL---ISRLPT 234 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LP------GEFQV 312 AG LS G +G + ++ T+ +EG F P +P G+ + Sbjct: 235 AAGVSRLSFGLRG--------AEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNI 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM- 371 YNAL AA AIG+D + LE+ RF G + +D ++ +N + Sbjct: 287 YNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKRFH---VEQVGDIVLIDDSYNANPASIA 343 Query: 372 ----ILKNIRTITSGRIIVVFG 389 LK+IR R I V G Sbjct: 344 AALVTLKDIR--QQNRAIAVLG 363 >gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acetobacter pasteurianus IFO 3283-12] Length = 461 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 91/365 (24%), Positives = 151/365 (41%), Gaps = 30/365 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R + G +F+A+ G+ DGH I A+ +GA AI+ SA D Sbjct: 26 VTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEKGAAAILAHSAEGFTD-------- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 IL+V +T L A + ++AVTG+ GK++ ++ SGL+ Sbjct: 78 PRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKTTTKEMLRLCLAPSGLTH----- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + +N P+ LA+ L +S ++ + + L ++ ++ Sbjct: 133 ---AAEASYNNHWGV--PLTLAR-LPREASFCISEIGMNHPGEILPLAKM--VQPDVAVI 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268 T +G H+ + + A K + LPK AI+ DDA+ E A A + Sbjct: 185 TTIGSAHLGHMGSLDAIAKEKASIITA-LPKGGIAIV-PDDAHGTEFFTAEAEKAQAVLW 242 Query: 269 SVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G HL + + +S++GK F+ P PG NA+ A C A+G Sbjct: 243 TCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNAVAALAACAALGA 302 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384 D A L PG+ T GG I + Y ++ S+ L +R I + R Sbjct: 303 DVAKAANALADFR--PGKGRGALTQIVGGAITLLDESYNASAASIRAALDVLRHIPATRR 360 Query: 385 IVVFG 389 I V G Sbjct: 361 IAVLG 365 >gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Synechococcus sp. PCC 7335] Length = 455 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 24/221 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R +QAG +FVA+VG DGH F QA+ +GA A +V FS T+ P Sbjct: 34 VTTDTRTVQAGELFVALVGETFDGHEFAKQAVEKGAIATIVKKGV----FSKTV--TLPR 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + ++A+TG+ GK++ V + LS F + Sbjct: 88 IEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTTKELVA-----AALSQF----GTV 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFT 210 + A N + I + K L L+++ + VE GL++ L K T Sbjct: 139 FKTRANYN-----NEIGVPKTLLGLTTEH-DYAVVEMGMRGLEEIALLTQIAKPTVALIT 192 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 N+G HI ++ A AK L E LP + A++ DDA Sbjct: 193 NVGTAHIGRLGSRAAIAQAKCELLRE-LPTDGTAVLNHDDA 232 >gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter arcticus 273-4] Length = 485 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 10/108 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R I+ G IF+A+ G+ DGH +I A++QGA A +VS I ++ P Sbjct: 58 IATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRP---------ISTDIPQ 108 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 LVV++TR L AS +H + ++A+TG+SGK++ + I R Sbjct: 109 LVVNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGR 156 >gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 163/365 (44%), Gaps = 37/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSATIRSN 89 +S+DSR ++ +F+ + G K DG F+ A+ +GA+A++ + + L+DF Sbjct: 29 ISTDSRKVKKDELFIPLKGEKYDGEDFVKDAMTKGAKAVLTARLDNIEYLRDFPFN---- 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ V++T + L AS K +AVTG++GK++ + QI + +++ Sbjct: 85 --VIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGKTTTKDMIAQILSK----KYKVLK 138 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I+ + ++ + V + S G + + +K F Sbjct: 139 TE--GNF--NNEIGLPLTIF-----NLENTHQIAVVEMGMSGFGEIRRLKNIVKPQVAVF 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G HI+ +++ AK L E+ +E+ ++ ADD + K + Sbjct: 190 TNIGVAHIEKLGSRENILKAKTELIED-FKEENVIVLNADDDM---LSKIPLQYSSKYYR 245 Query: 270 VGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + I K C I + + T+ + + + +PG VYN+L A + + G Sbjct: 246 YGIKNGEI---KACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAAICVGLEFG 302 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 +D + E L+ PG+ + +G +D A+ +N S++ L +R R Sbjct: 303 VDVDDMAEVLKDFQ--PGKMR-LNIIEKGDIKIIDDAYNANPDSMKAALNVLRDFPGKRK 359 Query: 385 IVVFG 389 I V G Sbjct: 360 IAVLG 364 >gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha710] Length = 445 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ DDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNVDDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ KD PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIAT--KDI----PLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -KKNGVVFIDDSKGTN 330 >gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leuconostoc fallax KCTC 3537] Length = 451 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 32/312 (10%) Query: 22 PMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P Q ++ I+ V+ DSRH++ G +F+A+V + DGH +I A+A GA A++V S + L Sbjct: 15 PFQGKDSVAISGVAFDSRHVKEGQLFIALVA-ENDGHDYIENALANGAHAVLVDSQHQL- 72 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + + P ++VD+T + + ++A+TG++GK++ +I + Sbjct: 73 ------KEDWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDMAAEIANQ- 125 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 Q T ++ +N + P + LS S V V + G Sbjct: 126 -----QYRTFKTPENY--NNEIGVPMTL-----LSMPESTEVLIVELGMDRPGQLTVLSH 173 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 ++ T +G HI++ +T++ AK+ + L E II D+ + + Sbjct: 174 LVEPDIAIITMIGEAHIEFFKTRRNIAKAKLEIING-LKAEGTLIIPNDEPL---LTQEI 229 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-- 318 + V + G ++ + +N+ Q I+ + F P+ G + + NAL A Sbjct: 230 SHIEQHVKTFGTIDADVNATDISVENNQSQFNINQQ----KFAIPMLGRYNIMNALAAIT 285 Query: 319 AGLCIAIGIDSA 330 AG + I + +A Sbjct: 286 AGNLLHIDLKNA 297 >gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter litoralis Och 149] Length = 476 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 57/389 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + VS D+R +QAG IFVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 20 EWQATGVSIDTRTLQAGDIFVAL-SDVRDGHDFVQQALDKGAAAALVSH------VPQGV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P+L+V + ++ L + ++AVTG+ GK+S + + G + Sbjct: 73 PEDAPLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHAS 132 Query: 147 I-------GPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + G T++ +D + ++ L+ HV++ Sbjct: 133 VASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVAL----------- 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 T + H++ + K +FE ++P AI+ AD S +M Sbjct: 182 ----------ITTVAAAHLEAFEDITGIAVEKASIFEGVVPN-GVAILNADVETSAILMA 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNAL 316 +A + R ++ G G L + A + + + L+ + PG NAL Sbjct: 231 KAQDCRLRDITFGEHGYDFKLMR--ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNAL 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDY---AHTSNSLEM 371 A + A+ D AL L L + GR E + +S R++VD ++ +N M Sbjct: 289 GAVAVMAALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSM 348 Query: 372 -----------ILKNIRTITSGRIIVVFG 389 + +I ++ GR I G Sbjct: 349 AAALEVLAAAKVTNDIGRVSKGRRIAYLG 377 >gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerococcus vaginalis ATCC 51170] Length = 459 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 48/355 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + KI +S DSR I+ +++ IVG K DG +FI + GA A ++ Y + S Sbjct: 21 KYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSGAVAFLIDENYKIPK-S 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS-------SVASFVQQI 136 +I P + V +T+K L A + I+A+TG++GK+ SV S ++ Sbjct: 80 ISI----PFVKVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKNLIHSVLSEKYKV 135 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ F+ ++ + + ++ +S+ + D Sbjct: 136 EKTQGNLNNEIGVPLTLLDFSDKTQI----------GVVEMGTEDFGEISLLTNIAKPDM 185 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE 255 + TN+G H+ ++++ AK+ + E L K IY DD K+ Sbjct: 186 AMI----------TNIGDAHLLKLKSREGIAKAKLEILEGL--KADGTFIYNGDDEILKK 233 Query: 256 VMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 V+ ++ + +S G + ++ K+ + + K S E +D+ PL G QV Sbjct: 234 VLP-SYTIKQKTISYGKEDGVNFKVYPKEFSSTYTK----FSYENEDYK--VPLLGTHQV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 YN +A + + + L K+ R E + R G +D A+ SN Sbjct: 287 YNGALAVLIGKLFNLSYEEIDNGLAKVSNNANRNELI---ERNGFDILDDAYKSN 338 >gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 452 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Bifidobacterium bifidum NCIMB 41171] Length = 519 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 104/428 (24%), Positives = 182/428 (42%), Gaps = 54/428 (12%) Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137 DFSA + P L+V++ RK +SL ++ YG+ P++ L V G T GK++ A F Q + Sbjct: 84 DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 139 Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 L++ G + SS ++ LTTP + + + + G+ ++ +E Sbjct: 140 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 195 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247 SS R+ G+ +F N+ DHI H T + Y K ++ + S A++ Sbjct: 196 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIV-----RNSRALVL 250 Query: 248 ADDAYSKEVMKR-AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + +++++ A +AG V + G + A H+ + I+ +G Sbjct: 251 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYR--IAADG 308 Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNS 353 D +F L G+F NA A + A GID A +E + + GR E Sbjct: 309 ADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQ 367 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLA 410 VDYAH S+ +L + RI +V G G++ +R + + A Sbjct: 368 SNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRI 427 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVL 462 D I T ++ +E I E+ +PG +R A+ AI ++ +++ Sbjct: 428 DSFIFTAEDTDTEPFIDICTEMQRYITVPGIASTVISDRPTAVTNAIYDARAHADRFNII 487 Query: 463 VVAGKGHE 470 ++ GKG E Sbjct: 488 LIIGKGDE 495 >gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Staphylococcus epidermidis FRI909] Length = 451 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 78/366 (21%), Positives = 159/366 (43%), Gaps = 36/366 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN VS DSR I G +F+ G DGH FI QA+ GA A+ +S ++ + Sbjct: 26 INGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGAGAV-----FSEKENRYSEEIQ 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 PI+ V++T L A ++AVTG++GK++ ++ + + F++ Sbjct: 81 GPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDMIESVLS----TEFKVKK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA-- 206 T +N + P L+ L T +S+ E G H+++ + IA Sbjct: 137 TQG----NYNNEIGMP--------LTLLELDEDTEISILEMGMSGF--HQIELLSNIAQP 182 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263 TN+G H+ +++ AK + L K + IY D+ K + + +A Sbjct: 183 DIAVITNIGESHMQDLGSREGIAKAKFEITTGL--KTNGIFIYDGDEPLLKPHVTQVKDA 240 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +++S+G + + + N + + ++ K+ + P+ G + NA +A + Sbjct: 241 --KLISIGLNSDNTYTCHMNDVKN-EGIHFTINQKEH-YHLPILGTHNMKNAAIAIAIGH 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G++ ++ ++ + + R E +++ I Y + S++ + + ++ GR Sbjct: 297 ELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTL-SVMKGR 355 Query: 384 IIVVFG 389 I++ Sbjct: 356 KILILA 361 >gi|289809140|ref|ZP_06539769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 9/80 (11%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEM 455 MG IA + ADI +VTDDNPR+E+P I +I+ G+ ++ G R EA+ AI Sbjct: 1 MGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGM---LDAGQVRVMEGRAEAVTNAIMQ 57 Query: 456 LNKQDVLVVAGKGHETVHIV 475 DV+++AGKGHE IV Sbjct: 58 AKDNDVVLIAGKGHEDYQIV 77 >gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 157/391 (40%), Gaps = 88/391 (22%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N V D+R + G +FVAI G + DGH FIP A GA A V I ++ Sbjct: 43 VNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESGAAAAVSDR---------EIETD 93 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++V +TR+ L L +R Y + + ++ VTG+ GK++ + + G Sbjct: 94 RPYILVKDTREAL-LDLARCYRRAFDGLVVGVTGSVGKTTTKEMIAAV--------LSAG 144 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + + +N + P I+ L S + EA+ + L I L+ Sbjct: 145 YKTLKTQGNLNNAIGLPRTIF------ELDS------TYEAAVIEMGMSALGEISLLTRT 192 Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRA 260 G TN+G H++ T++ AK+ + E + P +P +I D+ + V + R Sbjct: 193 ALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPG-APLVINGDNDLLQTVQLDRP 251 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDF-----------LFP 305 VL+ C I N + V I G D +F L P Sbjct: 252 ------VLT-------------CGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLP 292 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVD 361 GE V NAL + G++ A + L G + G T + G + ++ Sbjct: 293 AIGEHNVLNALFGFAVGRFAGMEDAAIATAL-------GTYTPSGMRQNTRTVNGVMLIE 345 Query: 362 --YAHTSNSLEMILKNIRTIT-SGRIIVVFG 389 Y + +S+ L ++ ++ +GR I V G Sbjct: 346 DCYNASPDSMRAALTTLQQLSCAGRKIAVLG 376 >gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 460 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 159/405 (39%), Gaps = 48/405 (11%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQR 139 +S+ I + P LV R+ + + + G+ + L++ GT GK++ S V I + Sbjct: 74 YSSAIPFDNPELVEARARRIPVIRRAEMLGELMRLKYTLSIAGTHGKTTTTSIVGAIWEE 133 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHR 198 +GL PT + + S V H + A S D+ Sbjct: 134 AGLD-----PTIIVGGIVKGK----------------CSGAKVGHGDYLIAESDEFDRSF 172 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 L + A TN+ DH+D ++ A +A + F +P I+ DD ++++ Sbjct: 173 LSMMPSSA-IITNIDADHLDTYENIDAIKDAFTQ-FANKIPFYGQVIVCLDDPNVQQILS 230 Query: 259 RAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315 V++ G+ Q K+ ++ + + Q I + K F +PG V NA Sbjct: 231 HLKKP---VITYGFTRQAKY-RVENLVFVKGYPQFEIVCDVKSLGQFKLQIPGRHNVLNA 286 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A L + GI + + + V RFEF+G + G ++ DYAH L Sbjct: 287 TAAVALAVEEGISIEVARKAVAAFEGVKRRFEFIGEKN-GVMVFDDYAHHPTEATATLLG 345 Query: 376 IR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432 R RIIV F R + + G A D+ +VTD P E P E + + Sbjct: 346 FREAFPDKRIIVAFQPHLFTRTRDQHEAFGS-AFSNCDVLLVTDIYPSREKPIEGVTGAM 404 Query: 433 I--------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 + H FI N + I E+L DV+V+ G G+ Sbjct: 405 VANSAADRGHRDARFIGDVNNL--IPVCKELLKPNDVIVLMGAGN 447 >gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes DSM 20306] Length = 477 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 121/294 (41%), Gaps = 58/294 (19%) Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPS-----PIYLAKA 173 + GT GK+S S V Q +G SF IG Q NR T + I++A+A Sbjct: 117 LAGTHGKTSTTSMVVSALQAAGKDPSFAIG--------GQLNRAGTNAHHGKDDIFVAEA 168 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + S L ++ D I +I TN+ DH+DY + +AYF Sbjct: 169 --------------DESDASLLRYDPD-IAVI----TNIEPDHLDYFGSAEAYFQVFDDF 209 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----------GKFIHLKKV 282 E + P + I+ +D ++ E+ +RA +G +V+ G G I ++V Sbjct: 210 AERIKPNGT-LIVCVEDEHAAELGRRAVESGVQVVGYGSSKALAQHPDITPGAEILTEEV 268 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKL 339 VT+ + + + +PG V N AL+A L G + + E L Sbjct: 269 G--RETTAVTVKLPSGEVSYDLQIPGHHMVLNSAAALIAGELA---GAKAQALAEGLSDF 323 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVF 388 V RFE+ GT R+Y DYAH + +L R + GR++V F Sbjct: 324 TGVRRRFEYRGTAGDNIRVYDDYAHHPTEVAAVLGAAREKVTAEGLGGRVVVCF 377 >gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M13399] gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240013] Length = 445 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC AIG+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia phytofirmans PsJN] Length = 475 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 162/379 (42%), Gaps = 44/379 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVAI G++ D H F+P A+ A++++ + QD++ P Sbjct: 34 VSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR--TPQDWT------VPA 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A K ++AVTG++GK++V + I + + ++ +T Sbjct: 86 LKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL---AT 142 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +F +N + P ++ A L+ V + + L+ ++ + N Sbjct: 143 AGNF--NNDIGLPLTLFRLHAAHQLA---VVELGMNHPGETLELAKI--AEPTVAVVNNA 195 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAHNA 263 R+H ++ T +A + L P E A+ ADDAY+ +M A N+ Sbjct: 196 QREHQEFMATVEAVALEHASVIHALTP-EGVAVFPADDAYASIWRVAATGSRIMDFALNS 254 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R+ +G F V +I + Q+ ++++ + G+ +NAL A Sbjct: 255 AERITEAAVKGTFA--GNVLSIDTPEGQIEVTLQ---------VLGDHNAHNALAATSAA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A G+ + LE V GR + +GT + I Y +S+ + + + Sbjct: 304 LAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAS 363 Query: 379 ITSGRIIVVFGCGGDRDQG 397 + R++V+ G D G Sbjct: 364 RAAPRVLVMGDMGEVGDNG 382 >gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 452 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens NRL30031/H210] gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens NRL30031/H210] Length = 445 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQDDED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQN------IPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. natto BEST195] Length = 481 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 31 KNIAEMVKGTLTNP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEAGV 89 Query: 69 EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ L D S N +++VD+T L A + ++ VTG++GK+ Sbjct: 90 AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 142 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T +F +N + P + L+ + + + + Sbjct: 143 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 189 Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 S+ G +D + +A TN+G H+ +++ AK+ + L KE Sbjct: 190 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 243 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D + +++ A++ + G + L+ V +++ +++G + F Sbjct: 244 VLIYIGD---EPLLQNAYSCQTKTYGTGAHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357 Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389 + S++ ++ ++ G+ ++V G Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLG 384 >gi|289804639|ref|ZP_06535268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 132 Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 51/93 (54%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R++ E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P++ + + LS A R Y + EN+ V Sbjct: 80 HGVPVVYLSQLNERLSALAGRFYHEPSENMRLV 112 >gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella ictaluri 93-146] Length = 458 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 133/326 (40%), Gaps = 40/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V++D+R + G +FVA+ G DGH F QA+ GA A++V+ +L + Sbjct: 24 VTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALEGGAGALLVNRRLAL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V +TR L + + + P ++A+TG+SGK+SV I G + G Sbjct: 75 VPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKTSVKEMSAAILGLCGNVLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +N + P + + + G HV A S L + + Sbjct: 135 L--------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH-------SA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263 NL H++ + AK +F LP + AI+ D +++ + ++ Sbjct: 180 LVNNLAAAHLEGFGSLSGVARAKGEIFAG-LPPQGTAIVNVDSNDWESWQHALTEQ---- 234 Query: 264 GCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 RV Q G + V + T+ + L PLPG + NAL AA Sbjct: 235 --RVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAAA 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G V + L L VPGR Sbjct: 293 LTMSVGASLTQVQQGLAGLQAVPGRL 318 >gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase [Kitasatospora setae KM-6054] Length = 467 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 87/355 (24%), Positives = 150/355 (42%), Gaps = 40/355 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I+ G +FV + G + DGH + +A+A GA A++ AT P Sbjct: 30 VVTDNRRIEPGGLFVCVRGERVDGHDYAAKAVADGAVAVL-----------ATRPVGVPA 78 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++VD+ L L + + I+ +TG+SGK+S + Q+ G + F G Sbjct: 79 ILVDDVVVALGRLARAVVARAADVRIVGLTGSSGKTSTKDLIAQVLAGHGETVFPAG--- 135 Query: 152 TISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSF 209 + +N + P + + +A + +L V + H D L GI G Sbjct: 136 -----SNNNEIGHPLTALRIAPSTRHL-------VMEMGARHKGDIEYLTGITPPTVGLV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N+G H+ +++ AK + E L P E A++ ADD + + R RV+ Sbjct: 184 LNIGTAHLGEFGSREGIAEAKGEMVEALSP-EGVAVLNADDPLVRAMSSRTR---ARVVL 239 Query: 270 VGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + H++ + Q T+S L GE V NAL AA + + +G Sbjct: 240 FG-ESPDAHVRATDVRLDATGRPQFTLSTPAGSAPVRLRLYGEHHVSNALAAAAVAVELG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 + V E L + + R+ + G V+ A+ +N S+ L+ + T+ Sbjct: 299 MPVDRVAEALSEAGAL-SRWRMEVVDRADGLTVVNDAYNANPESMRAALRALATM 352 >gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Escherichia coli H299] Length = 452 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F QA A GA A++V+ + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVNRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + Sbjct: 135 LNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPEAA-------LV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F L P+ AI+ AD+ S++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++G + L L VPGR Sbjct: 292 LSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 88/384 (22%), Positives = 160/384 (41%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+ + GN+ DGH ++ AI +GA A++VS + D Sbjct: 23 NEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------- 143 I++VD+ + L A +A+TG+ GK+S ++ + Q L Sbjct: 75 KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQYDSLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNRLGLLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMKR- 259 TN+ H+++ + + AK +FE K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFEN-FSKNDIAVINADINCYNKIVSILKNL 233 Query: 260 ----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 +HN +++ G+ +HLK + K + P +P Sbjct: 234 SINRVYNFGISHNTPAQLVLYENLGEQVHLK------------YKINNKSLEITIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y A++ L I I G D + HL + GR E + N + RI DY + S Sbjct: 282 HFAENYTAIL---LIIDILGKDIEIAANHLANIPPNKGRGEII--NIQNSRIICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 86/383 (22%), Positives = 159/383 (41%), Gaps = 64/383 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ ++ DSR +++G +FV + G + DGH FIP A AQGA A + S Sbjct: 20 QFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 + ++VD+ A K ++LAVTG++GK++ + Q+ S Sbjct: 69 ERPVAGGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKT 128 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L K+ I+ AD + Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-KKDGLLIVPAD-----K 221 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310 ++ A C+++ G I L ++ +++ ++S D +FL P+ G++ Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQRIDLPVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + G+ + + +L + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFG 389 +IL+ TI + GR + V Sbjct: 333 RLILETFSTIPANPGGRKLAVLA 355 >gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA] gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA] Length = 855 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 89/393 (22%), Positives = 161/393 (40%), Gaps = 46/393 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + + SGL ++G T T + Q R+ Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHLLASSGL---RMGMTGTDGVYIQGQRI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ +Y Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNY 574 Query: 220 HQTQQAYFNAKMRLFEELLPK-------ESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271 T + K + + + P+ P + D V AH+ ++ Sbjct: 575 ISTVEDLAVLKSVIVQNVAPRGMAVLNAADPMVARMADGCPGSVTFFAHDPSLPTMARHR 634 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIG 326 QGK F+ ++ + I++ D G FQV NA+ + A+G Sbjct: 635 AQGKRVVFVDGPEIVVAEGANETRIALA----DIPLTRNGTIGFQVENAMSSIAAAWALG 690 Query: 327 IDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 ID ++ L PGRF + +G + DY H ++++ + + T+ + Sbjct: 691 IDWTVIRRGLATFVNDAATAPGRFNLF--DYKGATLIADYGHNPDAIQALCNAVATMPAQ 748 Query: 383 -RIIVVFGCGGDRDQGKRP---IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 R++V+ G G RD+ R I+G + D+ + D R ++ A + G+ G Sbjct: 749 RRMVVISGAGDRRDEDIRKQTQILGGV---FDDVVLYEDQCQRGRADGEVLALLREGLQG 805 Query: 439 FIEKGNRIEAIR-------TAIEMLNKQDVLVV 464 + +R+E IR TA+ L D+ ++ Sbjct: 806 -ASRTSRVEEIRGEFLAIDTALGRLQPGDLCLI 837 >gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM603] Length = 453 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQD 159 G P + + S A+D Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152 >gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio mimicus VM573] Length = 453 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQD 159 G P + + S A+D Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152 >gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens D str. JGS1721] Length = 453 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-AAFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio parahaemolyticus 10329] Length = 454 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +FVA+VG + D H F QA GA A++V + N Sbjct: 24 IDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVEKRLDV---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +T+ L AS ++ +A+TG+ GK++V V I Q+ G F G Sbjct: 75 APQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVASILQQKGNVLFTAG 133 >gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Acinetobacter baumannii ATCC 17978] Length = 466 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AII D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIIPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + + + +G F L P GE V NA A Sbjct: 246 KS--HQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRL-PFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ L + GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLAQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptostreptococcus stomatis DSM 17678] gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptostreptococcus stomatis DSM 17678] Length = 454 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 42/273 (15%) Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 S V +IC+ +GL ++ +G + A + P + L LS + V E S Sbjct: 126 SIVGEICKEAGLDTYVVGNIGNPAISAVEE--AQPGAV-LVIELSSFQLEAVYDFRPEVS 182 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + NL DH++ H T + Y AK +F + P ES ++ DD Sbjct: 183 T-----------------VLNLTEDHMNRHHTMENYAKAKANIFAKQTP-ESVCVLNYDD 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGK---FIHL---KKVCAIHNKQQVTISVEGKDFDFLF 304 ++++ + R + Q + I+L K + A+ + ++V I V +D Sbjct: 225 PITRDM---GNTCQARPVYFSRQSRPEAGIYLDDNKNIIAVKDGREVEI-VNAEDLS--- 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG + N++ A GLC+ GID ++ + L V R E+V N+ G +YV+ + Sbjct: 278 -LPGGHNLENSMAAIGLCLHFGIDKEIIKKVLTTFKAVEHRLEYV--NTVNGVVYVNDSK 334 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 +N I+ + S + ++ GG D+G Sbjct: 335 GTNP----DSTIKAVQSYKTPIILIAGG-YDKG 362 >gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus JCSC5402] Length = 447 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 78/377 (20%), Positives = 157/377 (41%), Gaps = 53/377 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E I+ VS DSR+I G +F+ G DGH ++ AI +GA A + Q + Sbjct: 23 YEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGAYAAL------WQRDAG 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QIC 137 + + P++VV++T L + + ++AVTG++GK++ ++ ++ Sbjct: 77 EVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDMIEAVLSPHFKVK 136 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + +IG T+ +D ++ + + G +S+ SH + H Sbjct: 137 KTQGNYNNEIGLPLTLCQLDEDTEIS----------ILEMGMSGFGEISL--LSHIAEPH 184 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + TN+G H+ +++ AK + + L P D+A K ++ Sbjct: 185 --------IAAITNIGESHMRDLGSREGIAKAKYEITDGLT---GPLFYDGDEALLKPLV 233 Query: 258 ---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 K AH G + Y + I Q + + D ++ P G N Sbjct: 234 KDNKDAHRIGFNEDNEYYIHEMI----------MQDKHLQFKVNDDTYIVPTLGSHNARN 283 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372 A +A + +G+ + L++L + R E + + G + ++ A+ ++ S++ Sbjct: 284 ATIAIAIGSYLGLSPEQINHSLQQLKLTGMRMEQL--EGKDGALLINDAYNASPTSMKAA 341 Query: 373 LKNIRTITSGRIIVVFG 389 + + + S I+VFG Sbjct: 342 IDTVSQMDSEVKIIVFG 358 >gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Yersinia enterocolitica W22703] Length = 454 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 55/391 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV+ D+R + G +FVA+ G + DGH F A+A GA A++VS ++ Sbjct: 25 ITEVTIDTRKVTPGCLFVALKGERFDGHDFAEDAVAAGAGALLVSKHLLVE--------- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G Sbjct: 76 APQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTSG- 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + A+ G + D + + Sbjct: 135 -----NFNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALV 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F LP AII AD + HN RV Sbjct: 183 NNLAAAHLEGFGSLAGVAQAKGEIFAG-LPANGTAIINADSNDWPHWQETLHNK--RVWR 239 Query: 270 VGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G I K + T+++E PLPG + NAL AA Sbjct: 240 FSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIE-------LPLPGRHNIANALAAA 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 L +++G A V E L +L VPGR + G++ +D ++ +N S+ + + Sbjct: 293 ALAMSVGASLAAVREGLTQLQAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLA 350 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 + R++VV GD + +G+ A+D Sbjct: 351 EMPGYRVMVV----GDMGE-----LGETAVD 372 >gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium genitalium ATCC 33030] Length = 505 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 151/387 (39%), Gaps = 74/387 (19%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84 DSR I G +FVA+ G DGH F AI +GA A+++ ++ ++ Sbjct: 34 DSRKITEGGLFVALPGANVDGHDFAQSAIDRGAVGALVARDVGVPAVILPPVEQIEGDNS 93 Query: 85 TIRSNTPI----LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + +N P VV K + A+ L KH I +TG++GK+S + + + Sbjct: 94 DLAANDPDGSARAVVAGMAKLAAHVATTLVDKHQLRITGITGSAGKTSTKDLIASVLADA 153 Query: 141 GLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + SF +IG T+ +D ++ +S++G+ H++ Sbjct: 154 GETVAPPGSFNNEIGLPYTVLRCTEDTDFL----------VAEMSARGIGHIAQ------ 197 Query: 194 LDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + +A G N+G H+ +++ AK L E LP + AI+ AD Sbjct: 198 --------LTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEA-LPADGIAILNAD 248 Query: 250 DAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVC----AIHNKQQVTISVEG 297 D + R RV+ + Y + I L V +H+ V Sbjct: 249 DELVAGMASRTK---ARVVCFSTDPRSNAEYVAEGITLDDVARASFTMHSPNSEPQQVRL 305 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K F G QV NAL A + + G+D+A V L H + V T + G Sbjct: 306 KVF-------GAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVNRMDVNTRADGVT 358 Query: 358 IYVD-YAHTSNSLEMILKNIRTITSGR 383 + D Y +S+ + + +GR Sbjct: 359 VINDAYNANPDSMRAGIAALGYTAAGR 385 >gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae PID1] gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID1] gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae PID1] Length = 445 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2] Length = 607 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 54/379 (14%) Query: 2 KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53 K + LIY KDF E++ N+L IF ++ +I V DSR + G +F AI Sbjct: 164 KNETLIYENLKDFSEILKREKLNEL-IFEEFLKKVQIKNVVMDSRKVIEGSLFFAI---- 218 Query: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 +G+ ++ + +GA ++V++ ++D ++ V +T + A++ K Sbjct: 219 NNGNSYVKDVLDKGA-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 269 Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++ +TG++GK++ V L S + T ++ +N + P + Sbjct: 270 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 316 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232 L+ + + + SS G + RL I + TN+G HI++ +T+ F AK Sbjct: 317 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 375 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L E + KE+ + DD Y V VG+ G H + NK Sbjct: 376 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKVGFNGNNTHKIESYDFSNKGSKF 424 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I ++GK+++ L G+ + N +A L IG+ + + L+++ + RF+ + Sbjct: 425 I-LDGKEYE--MSLLGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 480 Query: 353 SRGGRIYVDYAHTSNSLEM 371 G IY++ A+ ++ + M Sbjct: 481 --GNDIYINDAYNASPMSM 497 >gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51] gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 480 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 57/328 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG IF A+VG + DGH +I A +GA ++ + ++ V Sbjct: 20 DSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGKALIRV 79 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ + A + ++A+TG++GK++ V + +++ Sbjct: 80 ESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLS----EKYRVHKNME--- 132 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----GSFT 210 Q+N L P ++ L++ T V + E GL Q + + IA G T Sbjct: 133 -NQNNELGLP--------MTILNAPENTEVLILEMGMRGLGQ--IAFLCAIARPDIGVIT 181 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H++ +QQA AK L E LP+ A++ +D +S +K A + Sbjct: 182 NIGTTHMELLGSQQAIAQAKWELI-EALPETGSAVLNGEDEWS---VKLAGQDSHQTFFY 237 Query: 271 GYQGKF---------------------IHLKKV-----CAIHNKQQVTISVEGKDFDFL- 303 G +G+F + ++V CA+ +V V K + Sbjct: 238 GLEGRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFA-EVAAEVGQKTCPHVS 296 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSAL 331 PLPGE V +AL A L + I +D +L Sbjct: 297 LPLPGEHNVLDALAA--LSVGILLDVSL 322 >gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfomicrobium baculatum DSM 4028] Length = 452 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR ++ G +F IVG K DGH F QA+ GA A+V S+ L + Sbjct: 24 VGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGACAVVASAPLDL---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+L+V +T L A K ++ V+G++GK++V + Q+ +G ++ Sbjct: 75 VPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTVKEMLAQVLSAAGRTA 129 >gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Rickettsiella grylli] Length = 444 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 167/364 (45%), Gaps = 41/364 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR I+ +F+A+ G + DGH ++ +A GA A VV I ++ P+ Sbjct: 24 ISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHGAAAAVVEE---------VIETDLPL 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++TRK L A + I+ +TG+ GK++ ++ I ++GP Sbjct: 75 VLVEDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTREMIRSILA-------EMGP--V 125 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 +++F N + I L L +L+++ V ++H + L I + TN Sbjct: 126 LANFKNFN-----NAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQPDIALITN 180 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+ + AK +F L K AI+ A D + ++++++A +A R ++ G Sbjct: 181 IGPAHLQGFGSILRVAEAKAEIFSGLAQK-GVAILNAADNH-RDILEKA-SAQYRRVNFG 237 Query: 272 ------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + I L K + + G++ L G+ V NAL AA + + Sbjct: 238 LTQNCDFYARQIQLDKT----GRPTFLLVSSGEEIIIRLNLSGQHHVMNALAAAAVARQV 293 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 G++ +++ LEK+ + GR + ++ G +D ++ +N S+ LK + R Sbjct: 294 GVEFSVIQSGLEKMQPLSGR--VINRTTKTGATLIDDSYNANPSSVAAALKLLAHYKGLR 351 Query: 384 IIVV 387 I+V+ Sbjct: 352 ILVL 355 >gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter radioresistens SH164] Length = 468 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/346 (21%), Positives = 142/346 (41%), Gaps = 30/346 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ I + +DSR +AG F+A+ G + D H F+ Q + +G + +V L Sbjct: 34 EQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNKGCQVAIVERPLDLDMMQ--- 90 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 LVV +TR+ L + ++P+ ++A+TG+SGK++ + I R Sbjct: 91 ------LVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR------ 138 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + PT ++ +N L P + L + + + AS G + ++ Sbjct: 139 -LAPT-LVTRGNLNNDLGVPMML-----LELTAEHQYAVMELGASHQGEIDYTSQLVQPQ 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+G H+ ++ AK ++ + K+ ++I A D ++ + Sbjct: 192 VAGIINVGTAHLGEFGGREGICRAKSEIYAH-IAKDGTSVIPAADDFTDAIRHAVQT--T 248 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +VLS G +G I+ ++ + Q + + P G V NA A +AI Sbjct: 249 QVLSFG-EGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALAI 307 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 GI ++ LE GR F+ S +++D + +N M Sbjct: 308 GISLDDIVIGLELAQGAKGRLNFI---SHKQHLFIDDTYNANPTSM 350 >gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-93-1035] gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae SK-93-1035] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Ralstonia eutropha H16] Length = 466 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 36/378 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V SDSR ++ G +FVA+ G + D H FI +A+GA A++VS + + Sbjct: 28 EFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSR---------EVDA 78 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +V +TR L + + +AVTG++GK++V + I + +G Sbjct: 79 GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VG 132 Query: 149 PTSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLI 205 +++ +N + P + +A L+ G+ H G+ Q + I Sbjct: 133 EEQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVI--- 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS----KEVMKRAH 261 TN R+H ++ + +A + L + +Y DA S V + A Sbjct: 190 ----TNAQREHQEFMVSVEAVAHEHAAAIAAL--PANGVAVYPLDAESGGAYAPVWRNAA 243 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 A R LS G + V + Q + + G FD L GE V NAL A Sbjct: 244 GA-RRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALAAIAC 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +A G+ + L V GR + + GG + +D + +N S+ + + Sbjct: 303 ALAAGVHVPAIQRGLAGFQAVKGRLQV--KYTPGGTVVIDDTYNANPDSMRAAIDVLAGF 360 Query: 380 TSGRIIVVFGCGGDRDQG 397 + R++V+ G DQG Sbjct: 361 AAPRVLVLGDMGEVGDQG 378 >gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria gonorrhoeae FA 1090] gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae F62] gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria gonorrhoeae FA 1090] gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria gonorrhoeae F62] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVMNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +F + ++ ADD + + MKRA + S+ ++ F + + + Sbjct: 209 EIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKRFSLEHEADFWLERGTGCLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] Length = 492 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 40/286 (13%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 I AVTGT+GKS+V +F QI Q++G+ +F IG L TP + Sbjct: 128 KIAAVTGTNGKSTVTTFTGQILQQAGVRTF-IG-----------GNLGTPFSDAACECFK 175 Query: 176 YLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFT-------NLGRDHIDYHQTQQAYF 227 + S V+V E SS+ L+ + GSF+ NL DH++ H++ + Y Sbjct: 176 FPSDDPPYQVTVLEVSSYQLE---------LPGSFSPSVGVILNLSPDHLERHKSMENYG 226 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 K RLFE + + I +AD+ K K +N+G + + G ++ Sbjct: 227 ETKCRLFERMDSSKLSIIPHADEFLRKVAYK--YNSGS---TKAWLGALPGIQLDSQARR 281 Query: 288 KQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHVVP 343 V + + + +L L G NA A+ L +A +G+D + + +L +P Sbjct: 282 AVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLP 341 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 R + VG + + G ++++ + +N ++ I+ + + +++ G Sbjct: 342 HRMQIVGQDKK-GVLWINDSKATN-VDAAYTGIKGLADRKAVILLG 385 >gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii OSU 85-389] Length = 450 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 12/115 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NE+ +S+ I+ G +F+A+ GNK DGH +I AI QGA A++VS + D Sbjct: 23 NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 I++VD+ K L A LY + N +A+TG+ GK+S ++ + Q L+ Sbjct: 75 KIILVDDCLKALEQLA--LYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALT 127 >gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus VM223] Length = 453 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQR---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQD 159 G P + + S A+D Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152 >gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia bellii RML369-C] Length = 450 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 12/115 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NE+ +S+ I+ G +F+A+ GNK DGH +I AI QGA A++VS + D Sbjct: 23 NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIAD-------KN 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143 I++VD+ K L A LY + N +A+TG+ GK+S ++ + Q L+ Sbjct: 75 KIILVDDCLKALEQLA--LYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALT 127 >gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase [Bifidobacterium bifidum S17] gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase [Bifidobacterium bifidum S17] Length = 543 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 104/428 (24%), Positives = 182/428 (42%), Gaps = 54/428 (12%) Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG---TSGKSSVASFVQQIC 137 DFSA + P L+V++ RK +SL ++ YG+ P++ L V G T GK++ A F Q + Sbjct: 108 DFSA--ETGAPGLIVNDARKAMSLLSAEFYGR-PQDELTVVGITGTKGKTTTAYFTQAV- 163 Query: 138 QRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 L++ G + SS ++ LTTP + + + + G+ ++ +E Sbjct: 164 ----LNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEV 219 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIY 247 SS R+ G+ +F N+ DHI H T + Y K ++ + S A++ Sbjct: 220 SSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIV-----RNSHALVL 274 Query: 248 ADDAYSKEVMKR-AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + +++++ A +AG V + G + A H+ + I+ +G Sbjct: 275 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYR--IAADG 332 Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGID---SALVLEHLEKLHVVPGRFEFVGTNS 353 D +F L G+F NA A + A GID A +E + + GR E Sbjct: 333 ADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIA-GRMEQFHDPQ 391 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLA 410 VDYAH S+ +L + RI +V G G++ +R + + A Sbjct: 392 SNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHRI 451 Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK--GNRIEAIRTAI----EMLNKQDVL 462 D I T ++ +E I E+ +PG +R A+ AI ++ +++ Sbjct: 452 DSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNII 511 Query: 463 VVAGKGHE 470 ++ GKG E Sbjct: 512 LIIGKGDE 519 >gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia kristensenii ATCC 33638] Length = 427 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 165/385 (42%), Gaps = 55/385 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +FVA+ G + DGH F AIA GA A++VS ++ P LVV Sbjct: 4 DTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVE---------APQLVV 54 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 55 KDTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG------N 108 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F D + P+ L L + + A+ G + D + + NL Sbjct: 109 FNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAA 161 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H++ + AK +F L P AII AD + HN RV G Sbjct: 162 HLEGFGSLAGVAQAKGEIFAGL-PANGTAIINADSNDWPHWQETLHNK--RVWRFSPHGA 218 Query: 276 ----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 I K + T+++E PLPG + NAL AA L +++ Sbjct: 219 EDIDFFASDVRITPKTTYFTLHSPLGTVAIE-------LPLPGRHNIANALAAAALAMSV 271 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 G A V + L +L VPGR + ++ G++ +D ++ +N S+ + + + R Sbjct: 272 GASLAAVRQGLTQLQAVPGRLFPIELSA--GKLLLDDSYNANVGSMTAAAQVLAEMPGYR 329 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALD 408 ++VV GD + +G+ A+D Sbjct: 330 VMVV----GDMGE-----LGETAVD 345 >gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens str. 13] gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium perfringens str. 13] Length = 453 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens C str. JGS1495] Length = 453 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A +++ G F I K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLML 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916] Length = 488 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 41/333 (12%) Query: 24 QWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 QW +R+ + V +DSR ++AG +FV +VG + DGH F+ A GA+A +V++ + Sbjct: 46 QWVQRQSEPLGPVCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGAQAALVAAGSNAS 105 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + P D T + L AS + ++AVTG++GK++ + R+ Sbjct: 106 LPEGLLHWRVP----DTTLAYQQL-ASLHRQQLNAAVVAVTGSAGKTTTRELI-----RA 155 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG------L 194 L+S +GP I + A +N P+ L ++Q V VE G L Sbjct: 156 ALAS--LGP---IQASASNNNNDIGVPLTLLG-----TTQHHAAVVVEMGMRGPGEIERL 205 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + I +I TN+G HI +++A AK + L + +I A D + Sbjct: 206 SRCAQPDIAVI----TNIGTAHIGRLGSREAIAAAKCEITAA-LKLDGVVVIPAGDPLLE 260 Query: 255 EVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + R RV VG G L + + + + + +FD+ PL G Sbjct: 261 TALARVWQGRIHRVALVGDPGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNA 320 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHV-VPG 344 N L+A + + +DS + L L V VPG Sbjct: 321 RNWLLARAVASGLNVDS----DSLVALDVDVPG 349 >gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 452 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 162/368 (44%), Gaps = 45/368 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 25 DTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DL 75 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 76 PQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG-- 133 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 ----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALVN 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRAH 261 NL H++ + AK ++ L P+ AI+ AD+ ++V + + Sbjct: 183 NLAAAHLEGFGSLAGVAKAKGEIYTGL-PENGIAIMNADNNDWLNWQSIIGDRQVWRFSP 241 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 NA + + IH+ + + T+ D L PLPG + NAL AA L Sbjct: 242 NAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAAL 292 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +A+G + L L VPGR + + ++ +D A+ +N S+ ++ + + Sbjct: 293 SMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSEM 350 Query: 380 TSGRIIVV 387 R++VV Sbjct: 351 PGYRVLVV 358 >gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfobacca acetoxidans DSM 11109] Length = 463 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 27/363 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR QAG IF+ + G + DGH FI +AI +G A+V + A+ Q + + I Sbjct: 30 VSTDSRTAQAGEIFIPLRGERFDGHDFIDRAIKRGVRALVAAEAW-WQRQNHQFPKDLTI 88 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V T + L A + ++A+TG+ GK++ + + S F++ Sbjct: 89 VLVPETLRALGDLAHCWRQRFSGPVIAITGSCGKTTTKEMIALVLA----SRFRVLKNEL 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 + I L + L L++ T V +H + RL I + TN Sbjct: 145 NLNNL----------IGLPQTLLALNTGHETAVVEMGMNHFGEIRRLAQIARPDIAVVTN 194 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSV 270 + H++ + + AK + + L + + IIY ADD + + H+ + LS Sbjct: 195 VHAAHLEGLGSLEGVAQAKAEVIQGL--RNNGLIIYNADDQRLRAAL---HHFKGQTLSF 249 Query: 271 GYQ-GKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G+ G I C Q+ I +GK + LPG Q+YNAL AA + +A+G+ Sbjct: 250 GFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNALAAAAVGLALGLP 309 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIV 386 + + + L + + R + ++ G I+ D Y S+ M L+ + ++ + GR + Sbjct: 310 AEQISQALGRFAGLKHRSQMQ-CHTSGIHIFNDCYNANPGSMAMALQTLASLKNQGRAVA 368 Query: 387 VFG 389 G Sbjct: 369 ALG 371 >gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio splendidus LGP32] Length = 457 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN VS+D+R ++ G +FVA+VG + D H F QA+ A A++V L N Sbjct: 28 INAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEANASALLVERKLDL---------N 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148 +VV++T+ L ++ ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 79 ITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGN 138 Query: 149 -------PTSTISSFAQDN 160 P + + S A D+ Sbjct: 139 FNNDIGVPLTLLRSEANDD 157 >gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222] Length = 457 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN VS+D+R ++ G +FVA+VG + D H F QA+ A A++V L N Sbjct: 28 INAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEANASALLVERKLDL---------N 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG- 148 +VV++T+ L ++ ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 79 ITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAGN 138 Query: 149 -------PTSTISSFAQDN 160 P + + S A D+ Sbjct: 139 FNNDIGVPLTLLRSEANDD 157 >gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 445 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F ++ ADDA+ + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GGGVQVLNADDAFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 IS + PL G N + A LC A G+ +LEH++ +P R E +G Sbjct: 263 LISTQD------IPLQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 138/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEXTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G +N + P + L + + A+ G + Sbjct: 128 TLYTAGNL--------NNDIGVPXTL-----LRLTPEYDYAVIELGANHQGEIAWTVSLT 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 + A NL H++ + AK +F LP+ AI AD+ S Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIXNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L ++G + L L VPGR Sbjct: 285 NALAAAALSXSVGATLDAIKAGLANLKAVPGRL 317 >gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1002] Length = 470 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 42/382 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + VS+DSR G +F+AI G++ D H F+PQ + A++V A + +++S Sbjct: 25 RFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV--ARTPENWS----- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V +TR+ L A + ++AVTG++GK++V + I + + ++ Sbjct: 78 -VPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL- 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +T +F +N + P ++ A L+ V + + G + + Sbjct: 136 --ATAGNF--NNDIGLPLTLFRLHAAHRLAV-----VELGMNHPGETEQLAKLAEPTVAV 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKR 259 N R+H ++ T +A + L P E A+ ADDAY+ ++ Sbjct: 187 VNNAQREHQEFMATVEAVALEHASVIHALSP-EGTAVFPADDAYASIWRVAATGNRIIDF 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A N R QG F + ++++I D + G +NAL A Sbjct: 246 ALNNAERTTEAAVQGTF----------DGKRLSIDTPQGRLDVTLQVLGNHNAHNALAAT 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKN 375 +A G+ + LE V GR + S G +D + +N S+ + Sbjct: 296 SAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDV 355 Query: 376 IRTITSGRIIVVFGCGGDRDQG 397 + + S R++V+ G D G Sbjct: 356 LASRESPRVLVMGDMGEVGDNG 377 >gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004] Length = 460 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 10/112 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN V DSR + G +F+A+ G K D H F+ QGA A++V+ + Sbjct: 29 QINTVEIDSRKMVRGGLFIALKGEKFDAHDFVADVAKQGAGALLVNRRLEI--------- 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQR 139 + P +VV+NTR + A+ + + I+A+TG+SGK+SV I CQR Sbjct: 80 DCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGSSGKTSVKEMTAAILCQR 131 >gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 470 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 25/322 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 I+ V +D+R I+ G +FVA+ G + D + + +A A+GA A++ + + + A + Sbjct: 26 SIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEAFAKGAAAVLCHAGLTASAYPAGL-- 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V+N++ L+ A+ + ++AVTG++GK++V + I + Sbjct: 84 --PRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKTTVTQMIASILHAHAPDGAAL- 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +T+ +F +N + P + +A ++ G+ H A + Q + L+ Sbjct: 141 --ATVGNF--NNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAVLAAMAQ---PTVALV- 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N R+H+++ T +A + LP+ A+ ADD Y+ + R +AG R Sbjct: 193 ---NNAQREHLEFMHTIEAVARENGSVLSS-LPETGTAVFPADDDYAP--LWRELSAG-R 245 Query: 267 VLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V++ G G ++ QV + + + G V N+L AA + Sbjct: 246 VVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSLAAAACAL 305 Query: 324 AIGIDSALVLEHLEKLHVVPGR 345 A G+ + V LE V GR Sbjct: 306 AAGVPAITVARGLEAFVPVKGR 327 >gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 442 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 32/327 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I S DSR+++ G +FV + G+K DGH FI +AI GA +V+ L + + Sbjct: 8 ITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRHSV---H 64 Query: 90 TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++ V++T L A + K +++AVTG+ GK++ + + Sbjct: 65 PPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEK-------- 116 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAG 207 S + + N S I L L L+ V + + ++ G + + G Sbjct: 117 -YSILKTHGNLN-----SEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVG 170 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T + HI+ + + AK L E LLP AI+ DD + + + + V Sbjct: 171 VITRIAESHIEKLGSLENIAEAKGELLENLLPG-GTAILNCDDNWVRRLRSKVPG---EV 226 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L G + V +K I K PL G+ + NAL A + G+ Sbjct: 227 LYYGLTDGDLSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGL 286 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + LE F GT+ R Sbjct: 287 DLTQSIRALEG---------FTGTSMR 304 >gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium SWAT-3] Length = 457 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN VS+D+R ++ G +FVA+VG + D H F QA+ A A++V L N Sbjct: 28 INSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEANASALLVQRKLDL---------N 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV++T+ L ++ ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 79 ITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVKEMVASILQQRGKVLFTAG 137 >gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM 16841] Length = 476 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 88/407 (21%), Positives = 158/407 (38%), Gaps = 82/407 (20%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + R+I DSR ++ ++F+ + G K DGH FIP +GA A++ S L++ + Sbjct: 24 KTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFEKGALAVL--SEEKLENPAG- 80 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQ 138 P ++V+NT + A+ ++ +TG+ GK+S +AS + Q + + Sbjct: 81 -----PYILVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTSTKEMIASVLAQKYNVLK 135 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G + +IG TI +++++ I + LS+ + V Sbjct: 136 TEGNLNNEIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMANPDICV---------- 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 TN+G H++ T+ AK F L P + A++ DD K Sbjct: 186 -----------ITNIGLCHLENLITRDGILKAKTESFAHLTP-DGIAVLNGDD--DKLCD 231 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDF------- 300 K+ N G F ++K + ++ T +VE D Sbjct: 232 KKVVN--------GKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTGTKAAI 283 Query: 301 -------------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + P+ GE VYNAL A + +G+ + +E + + GR Sbjct: 284 HYPSKETGGEVTMEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTIGGRSN 343 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD 393 + N G +D + +N + M ++ + GR I V G G+ Sbjct: 344 LIHKN---GITIIDDCYNANPVSMKASIDVLSNAPGRKIAVLGDMGE 387 >gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 473 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 22/369 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E + +D+R G +F+A+ G D H F+ +A+ QGA ++V +L + Sbjct: 21 KETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGASGLLVHEENALIE---K 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ IL+V +T K L + + I+ +TG++GK++ F + S + Sbjct: 78 LKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGKTTTKEFTAALVGSSMDVHY 137 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G SF +N P + L ++ V + + + G + + Sbjct: 138 NKG------SF--NNHWGVPFTL-----LQLPPNKDVAIIEMGMNHAGEITELVHIAEPD 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 T +GR H+++ T + AK ++E ++ I D+ + + +A + Sbjct: 185 VVVCTMVGRAHMEFFGTIEKVAEAKEEIYEA-AGDQTVRIYNLDNTQTHNMYVKARDKFP 243 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R+L+ + + + + N +++I S+ G+ + G + N + AA + Sbjct: 244 KARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLMAAASV 303 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380 +A+G+ A V L GR + V S I+ Y +S++ ++ N++ +T Sbjct: 304 GLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANPDSMKALIDNMKLLTV 363 Query: 381 SGRIIVVFG 389 GR + VFG Sbjct: 364 PGRKVGVFG 372 >gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci RD1] gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Chlamydophila psittaci Cal10] Length = 448 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 43/371 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ V+ DSR ++ G +F A+ G DGH F+ QA GA A VVS Y F Sbjct: 24 KKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++VV++T + L I+ +TG+ GK++ +F + S + Sbjct: 79 -GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL--SSVYRVYA 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P S +++LT P + +A + + + S Q L ++ Sbjct: 136 SPKS------YNSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 184 Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261 TN+ H+ Q Q K + +LLPK+SP Y MK++ Sbjct: 185 VITNIADQHVMNFPDQGVQGIAEEKSHILRNSRVQLLPKDSPWYSY--------FMKQSV 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A + + + K + K V IS D DF P + N L++ L Sbjct: 237 SAEKFSFAFYDETADFYYKAI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 292 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTI 379 + + ++ L + P RFE + R G ++ A+ + MI L I Sbjct: 293 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSVRNGIQIINDAYNACPEAMIAALDAIPNP 349 Query: 380 TS-GRIIVVFG 389 + G++I++ G Sbjct: 350 SEGGKVILILG 360 >gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga lettingae TMO] Length = 422 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 160/401 (39%), Gaps = 62/401 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVAI G K DGH + +AI +GA +V LQ ++ V Sbjct: 10 DSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEK--KLQHI-----PEEKLITV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------GLSSFQIG- 148 ++T +FL A KH ++ +TG++GK++ + Q+ + G + +IG Sbjct: 63 NDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGKDRAFRNPGNLNTEIGL 122 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 P S ++ + + + ++ L + HV++ Sbjct: 123 PLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAI--------------------- 161 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H Q+ K++L E + K AI+ Y K+++ R ++ Sbjct: 162 LLNVGTAHRGIAGNQEMILRGKLQLIEN-MQKNGTAIVL----YDKKLLDRISLKP--MV 214 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYN-ALVAAGLCIAIG 326 + GY+ L C I + + F L + Q+ N + V A L I +G Sbjct: 215 TFGYKKGDYQLVDYCYIDFSTKAFYKTPREQLIFNLKSIWNAGQLTNISAVLAALDI-LG 273 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGR 383 ID + LE V GRF + N IYV Y + S E ++ I+ + Sbjct: 274 IDCNKNI--LENFTPVAGRFRVMNCNG----IYVVDDTYNASIESFETAVETIKKLGKRS 327 Query: 384 IIVVFGCGGDRDQGKRPI-----MGKIALDLADIAIVTDDN 419 VV G ++QGK I +G+I L + + DN Sbjct: 328 FAVV---GSIKEQGKYSIETHRKLGEILEKLDGVVVYNVDN 365 >gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera] Length = 479 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 30/259 (11%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ILAVTGT+GKS+VA+F Q+ G+ F G S A LT PSP Sbjct: 119 ILAVTGTNGKSTVATFSGQMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSP--------- 169 Query: 177 LSSQGVTHVS-VEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + V V+ VE SS+ L+ +H + ++ NL DH++ H+T + Y K R Sbjct: 170 ---KPVFQVAVVEVSSYQLEVPNKHFCPSVAVV----LNLTSDHLERHKTMKNYAITKCR 222 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQ 290 L + I+ + E M+ N +++ + G F + + K + + + Sbjct: 223 LLSH-MTNSKLGILPFGNKLLNEAMEELVNE----VNLAWIGAFPGVKVDKEEKVASLRV 277 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAA--GLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I V + + G YNA VAA L + +GID+ + +EKL V P R + Sbjct: 278 PAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIEKLRVPPHRMQI 337 Query: 349 VGTNSRGGRIYVDYAHTSN 367 V +S G ++D + +N Sbjct: 338 VHKDSY-GVTWIDDSKATN 355 >gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Filifactor alocis ATCC 35896] Length = 452 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 85/391 (21%), Positives = 163/391 (41%), Gaps = 35/391 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +++DSR ++ G +F+AI G DG+ F+ A+ GA A++ ++I Sbjct: 27 IYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDMALDNGAVAVL-----------SSISHK 75 Query: 90 TP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +P ++ V +T K L AS ++++TG+SGK++ + L+S Q Sbjct: 76 SPRVITVPDTVKALGKLASGYRDMLDIPVISITGSSGKTTTKDMI-----FYALNS-QCN 129 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +F +N + P I L+ V + + SS G ++ K G Sbjct: 130 AYRTEGNF--NNEIGMPLTI-----LNSDEEHDVMILEMGMSSLGEIEYLCSIAKPNIGV 182 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H++ +Q+ F AKM + + ++ ++ +D + + + K + + Sbjct: 183 ITNIGTAHLEQLGSQEKIFEAKMEI-TSFMHEKDILLVNGEDKFLRNLDKDVYQPMIKTF 241 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + K + + ++G + ++ P G+ + N+L A G+ + +D Sbjct: 242 GFSNSCDYF-CKNYDYREDSTDICAMIDGLEVNYTIPSLGKHNILNSLAALGVASVLQMD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387 + L + P + G I D Y +S++ +L + + R I + Sbjct: 301 LQKAAKSL--IDFQPSKLRMQIEKKDGITIINDSYNANPDSVKSVLSILAEKNNVRRIAI 358 Query: 388 FG----CGGDRDQGKRPIMGKIALDLADIAI 414 G G D D+ R I G+ A DI I Sbjct: 359 LGDMLELGRDSDKYHRQI-GECAAHSCDILI 388 >gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii M21/2] Length = 460 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 25/231 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR ++ G IFVA G + DGH F +A+ QGA +VV+ + I Sbjct: 28 VTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNHPVP------GVPEEKAI 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L D+ + + A+ HP+ ++ VTG+ GK++ + LS F T Sbjct: 82 LCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALSGF----GET 131 Query: 153 ISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFT 210 I + Q+N L P + L L S V SH + RL + G T Sbjct: 132 IKTEGNQNNELGMP------RTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIIT 185 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +G HI +Q+ AK+ + LP+ +P ++ DD + ++ AH Sbjct: 186 CIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPFLRKAALPAH 235 >gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter baumannii AB900] Length = 466 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/351 (23%), Positives = 145/351 (41%), Gaps = 34/351 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +I + +DSRH ++G F+A+ G + D H F+ Q A G + +V Sbjct: 31 QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERP------- 83 Query: 84 ATIRSNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 I + LVV +TR L L A R ++A+TG+SGK++ + I R Sbjct: 84 --IDAEIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSR--- 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLD 200 + PT I+ +N L P + L K Y + G H + + Q + Sbjct: 139 ----LAPT-LITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVA 193 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 GI N+G H+ + AK ++ +LP + AI+ D ++ E+ + A Sbjct: 194 GI-------LNIGTAHLGEFGGRDGICRAKSEIYRHILP-QGVAIVPQQDDFTAEIREAA 245 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 + +++S G G + ++ + + P GE V NA A Sbjct: 246 KS--HQIMSFGAGGD-VFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVA 302 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A+G+ +++ LE+ GR F+ + +++D + +N M Sbjct: 303 FALALGVSLEDIVKGLEQAQGAKGRLNFI---QKAPHLFIDDTYNANPTSM 350 >gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis] gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] Length = 457 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 7 KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65 Query: 69 EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ L D S N +++VD+T L A + ++ VTG++GK+ Sbjct: 66 AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T +F +N + P + L+ + + + + Sbjct: 119 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 165 Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 S+ G +D + +A TN+G H+ +++ AK+ + L KE Sbjct: 166 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D + +++ A++ + G + L+ V +++ +++G + F Sbjct: 220 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 273 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 333 Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389 + S++ ++ ++ G+ ++V G Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLG 360 >gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium perfringens E str. JGS1987] Length = 453 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/373 (21%), Positives = 158/373 (42%), Gaps = 43/373 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86 ++I VS+D+R I+ G +F+A+ G +G+ ++ A +GA+ AIV L + + Sbjct: 24 KEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAFNKGAKIAIVDEVKCDLNE----L 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + ++ V NT + L A K ++ +TG++GK+S V + ++ Sbjct: 80 KEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGKTSTKDLVAAVLS----DKYK 135 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLI 205 + T +F +N + P L L V++ E GL Q IK + Sbjct: 136 VFKTK--GNF--NNEIGLP--------LMILELDSTYDVAILEMGMRGLGQ-----IKEL 178 Query: 206 A-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 A G TN+G HI+ +T++ AKM + K + ++ +D + + Sbjct: 179 AEIASPDLGIITNIGISHIEILKTRENILKAKMEI-ATFFDKNNTLVVCGNDDF----LG 233 Query: 259 RAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +A +++ G F + K + + T+ K+ +F +PGE + N ++ Sbjct: 234 ALPSAEYKIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLIL 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 + +G+ + L+ + R E + + G I D Y + +++ + + Sbjct: 294 GIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKD--GFSILNDCYNSSPVAVKSAIDVM 351 Query: 377 RTITSGRIIVVFG 389 + I R I V G Sbjct: 352 KNIEGKRRIAVLG 364 >gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria lactamica ATCC 23970] gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria lactamica ATCC 23970] Length = 445 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGDED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paenibacillus sp. HGF5] Length = 473 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR IQ G +FV IVG K DGH F+ +A GA A A+ +D + ++ Sbjct: 27 IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASGAGA-----AFWQRDHQP-VPAD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 P+++V++T K L A+ + ++ +TG++GK++V V + + + Sbjct: 81 LPLILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKDMVSALLETT 131 >gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis ATCC 29906] Length = 460 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 145/357 (40%), Gaps = 29/357 (8%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 +I Q + I +S+DSR I +F+A+ G++ D H FI +GA A++V+ Sbjct: 19 TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++ P ++V +TR + A+ + I+A+TG+SGK+SV I + Sbjct: 79 VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + + G +N + P ++ + + A+ G + Sbjct: 130 HCGETLYTHGNL--------NNDIGVPLTLF-----RLTPEHRFAVIELGANHIGEIAYT 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKE 255 +D +K + NL HI+ + Q AK +F L ++ AII D A ++ Sbjct: 177 VDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTG-LKEQGTAIINQQSNDVALWQQ 235 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 LS Q F + + T+ PLPG + NA Sbjct: 236 HFNSRQTQWSFSLSADTQADF-YPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 L A+ L +++G + + L L VPGR V + G+I +D + +N M+ Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTT--GKIVLDDTYNANDGSMM 349 >gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. D5] Length = 456 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/333 (21%), Positives = 130/333 (39%), Gaps = 41/333 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +++ V+ DSR IQ +F+AI G + DGH+FIPQ+I GA V + Sbjct: 26 KEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIHDGALCAVSEKRIESASY----- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V++ + L A ++ ++G+ GK+S + + + + Sbjct: 81 ---PYIMVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTSTKEMIASVLGQ------KY 131 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P I+ + V + + S G + + Sbjct: 132 NVLKTEGNF--NNEIGLPLTIF-----NIREEHEVAVLEMGISDFGEMERLAKMARPDVC 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H++ ++++ AK +F + PK I+ DD V H Sbjct: 185 VLTNIGCAHLEQLKSREGILKAKTEMFLYMNPK-GDIILNGDDDMLASVTPANH------ 237 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALVA 318 + F L A + + ++G F P +PG VYNAL A Sbjct: 238 ----IEPVFFGLDPALAYSAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAA 293 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + +G++ + + +E L + GR + T Sbjct: 294 IAVGRVLGMNDGEIRQGIESLVPLAGRNNLIET 326 >gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae AM-19226] Length = 453 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 453 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 137/348 (39%), Gaps = 41/348 (11%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ SF+ I + +GL PT I RL L YL Sbjct: 108 VAVAGTHGKTTTTSFLGTIFKEAGLD-----PTVIIGG-----RLNKYGSNALPGTGEYL 157 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 ++ S G L I ++ TN+G DH+DY++ + +R F Sbjct: 158 IAEA-------DESDGSFLTLLPIINIV----TNIGADHLDYYRDLDEIRESFVR-FMNN 205 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +P ++ DD ++V+ R VL+ G+Q + ++ + Q + Sbjct: 206 VPFYGLNVVCGDDPEIRQVLDRVKRP---VLTYGFQEQSRLRAEILSTSPGSQFNV-FHD 261 Query: 298 KDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 ++F L PG V N L A G+ I GID +L L V RFE G + Sbjct: 262 QNFWGRVKLNHPGRHNVLNCLAAIGVAIQAGIDKQDILRSLADFGGVGRRFERKGI--KD 319 Query: 356 GRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI 412 I V DY H + L+ R R +VV R R G+ L AD+ Sbjct: 320 DVIVVDDYGHHPTEIAATLETARQCHPDRRLVVL-FQPHRFTRTRDFFGEFCRVLAGADL 378 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 ++T+ P SEDP I G+ G+ ++ RT + D Sbjct: 379 LLLTEIYPASEDP-------IPGVNGWSLAQGVMQVARTPVRFYQSLD 419 >gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae bv. albensis VL426] Length = 453 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae CT 5369-93] Length = 453 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oenococcus oeni PSU-1] Length = 461 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 89/394 (22%), Positives = 170/394 (43%), Gaps = 58/394 (14%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62 ++I Q E ++ + DSR I+ G +F+ I + ++DGH FI Sbjct: 17 INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A S D ++++ P+++V +T+ L A K +AVTG Sbjct: 77 ALKNGAVA-------SFADH--IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQ 180 ++GK++ + + R +++ T + +N + P+ I A + ++ Sbjct: 128 SNGKTTTKDLIASVLSR----KYKVHRTVA----SNNNEIGVPTTILNMPADTEIAVIEM 179 Query: 181 GVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+ H+ + A S L+ + I LI T +G HI++ +T+ +AKM + + L Sbjct: 180 GMDHLGQLTALSKMLEPN----ISLI----TMIGEAHIEFFKTRDKIADAKMEIIKGL-- 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K+ IY D E++ + V + K + V I +K++++ V + Sbjct: 230 KKDGTFIYDGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSFKVNQET 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G+F N A + + S + E + L + R + + T S+G I Sbjct: 286 YS--VNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKGETII 342 Query: 360 VDYAHTSNSLEM----ILKNIRTITSGRIIVVFG 389 D +++ + + ILK+ T G+ I+V G Sbjct: 343 SDVYNSNPTAAIKAIEILKDFP--TRGKKILVLG 374 >gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chromohalobacter salexigens DSM 3043] Length = 452 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 13/112 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V++D+RH+ G +FVA+VG + DGH F+ QA A GA A VVS R Sbjct: 24 VTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAVAAVVSR-----------RVA 72 Query: 90 TPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 +P+ + V +TR L + A ++AVTG SGK++V + I R Sbjct: 73 SPLAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEMLAAILSR 124 >gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya majuscula 3L] Length = 457 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 45/332 (13%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + E+ +++D+R+++ G +F+A+ G K DGH + A+ +GA ++ + Sbjct: 21 IPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGALTVIAEAT---- 76 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 +A+ P++ V+NT K A + ++AVTG+ GK++ + + Sbjct: 77 --NASQLEGLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELIAAVLSTK 134 Query: 141 GLS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 G + +IG T+ TP Y ++ S + ++ A+ Sbjct: 135 GTVLKTQANYNNEIGVPKTLLEL-------TPDHDYAVIEMAMRGSGQIAELTEIANP-- 185 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 G TN+G HI + +A AK L + A++ D+ Sbjct: 186 -----------TVGVITNVGTAHIGLLGSTEAIAKAKCELLAHM-SNNGVAVLNHDN--Q 231 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + A + L+ G +G + + + + VEG +F PLPG Sbjct: 232 RLIDTAAQVWQGQTLTYGLEGGDVQGQLIAP------EILKVEG--MEFPIPLPGRHNAL 283 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 N L A + +G+D + L + + PGR Sbjct: 284 NYLAALAIGKLLGVDWETLRNGL-NVELPPGR 314 >gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Citrobacter sp. 30_2] Length = 452 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F +A GA A++VS + +N Sbjct: 24 LDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVSR---------PLDTN 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG 133 >gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM 7084] gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM 7084] Length = 471 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 30/284 (10%) Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169 + + P+ +A+TGT+GK++ S V + + +G + +G RL T + Sbjct: 110 WRESPDRWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVGNI---------GRLCTDELVR 160 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 +++ E SS L RL + + N+ DH+++H + + Y A Sbjct: 161 RRDGAWFVA---------ELSSFQLATSRL--LHPRCAALLNVTPDHLEWHGSLEGYAAA 209 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K R+F+ L + A++ +D Y ++ + R G R L VG + + + + A Sbjct: 210 KERIFQN-LSGDDLAVVSQEDGYCRDAIGRLEARGVRTLHVGVREEPVSGE--AAFVRDG 266 Query: 290 QVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +T+ ++G + PL GE N L A+ + + +G V LE H + R Sbjct: 267 WLTVRLDGGERRVAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIEHR 326 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 E VG + G +V+ + +N+ + + K + GRI+V+ G Sbjct: 327 IEPVGEFA--GVRFVNDSKATNT-DSVEKALTAFDRGRIVVLLG 367 >gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus subtilis BSn5] Length = 457 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 7 KNIAEMVEGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65 Query: 69 EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ L D S N +++VD+T L A + ++ VTG++GK+ Sbjct: 66 AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 118 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T +F +N + P + L+ + + + + Sbjct: 119 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 165 Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 S+ G +D + +A TN+G H+ +++ AK+ + L KE Sbjct: 166 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 219 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D + +++ A++ + G + L+ V +++ +++G + F Sbjct: 220 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIEKTFF 273 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 333 Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389 + S++ ++ ++ G+ ++V G Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLG 360 >gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429] Length = 461 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 89/394 (22%), Positives = 170/394 (43%), Gaps = 58/394 (14%) Query: 18 LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN---------------KEDGHLFIPQ 62 ++I Q E ++ + DSR I+ G +F+ I + ++DGH FI Sbjct: 17 INISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFINS 76 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ GA A S D ++++ P+++V +T+ L A K +AVTG Sbjct: 77 ALKNGAVA-------SFADH--IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAVTG 127 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQ 180 ++GK++ + + R +++ T + +N + P+ I A + ++ Sbjct: 128 SNGKTTTKDLIASVLSR----KYKVHRTVA----SNNNEIGVPTTILNMPADTEIAVIEM 179 Query: 181 GVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 G+ H+ + A S L+ + I LI T +G HI++ +T+ +AKM + + L Sbjct: 180 GMDHLGQLTALSKMLEPN----IALI----TMIGEAHIEFFKTRDKIADAKMEIIKGL-- 229 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 K+ IY D E++ + V + K + V I +K++++ V + Sbjct: 230 KKDGTFIYDGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSFKVNQET 285 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + L G+F N A + + S + E + L + R + + T S+G I Sbjct: 286 YS--VNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLL-TGSKGETII 342 Query: 360 VDYAHTSNSLEM----ILKNIRTITSGRIIVVFG 389 D +++ + + ILK+ T G+ I+V G Sbjct: 343 SDVYNSNPTAAIKAIEILKDFP--TQGKKILVLG 374 >gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Proteus mirabilis HI4320] gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus mirabilis HI4320] Length = 460 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 145/357 (40%), Gaps = 29/357 (8%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 +I Q + I +S+DSR I +F+A+ G++ D H FI +GA A++V+ Sbjct: 19 TITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKID 78 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++ P ++V +TR + A+ + I+A+TG+SGK+SV I + Sbjct: 79 VE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASILR 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + + G +N + P ++ + + A+ G + Sbjct: 130 HCGETLYTHGNL--------NNDIGVPLTLF-----RLTPEHRFAVIELGANHIGEIAYT 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA---DDAYSKE 255 ++ +K + NL HI+ + Q AK +F L ++ AII D A ++ Sbjct: 177 VNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTG-LKEQGTAIINQQSNDVALWQQ 235 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 LS Q F + + T+ PLPG + NA Sbjct: 236 HFNSRQTQWSFSLSADSQADF-YPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 L A+ L +++G + + L L VPGR V + G+I +D + +N MI Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTT--GKIVLDDTYNANDGSMI 349 >gi|319778584|ref|YP_004129497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Taylorella equigenitalis MCE9] gi|317108608|gb|ADU91354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Taylorella equigenitalis MCE9] Length = 443 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 118/286 (41%), Gaps = 42/286 (14%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++++AV+GT GK++ S + I Q +GL+ +F IG + F R + S ++ +A Sbjct: 91 QHVIAVSGTHGKTTCTSMLTHILQSAGLNPNFLIGGIA--KDFNISARFNSQSKFFVIEA 148 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y ++ + S + H I N+ DH D +A N + Sbjct: 149 DEYDTA------FFDKRSKFVHYHANTAI------INNIEYDHADIFPDLKAIEN-QFHN 195 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F +LP+ I+ +D ++ R C+ + +G G + + V I Sbjct: 196 FVRILPRNGTLIVPKNDETIDRILSRG--LYCQKIEIGDGGTWSY------------VNI 241 Query: 294 SVEGKDFDFL----------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 S ++FD L + + G + NAL IG+ AL +E L + Sbjct: 242 SDSTQNFDILKDGQNVGHINWEMTGLHNIKNALSCIAAADVIGVKPALAIEALNNFSGIK 301 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R E VG N IY D+AH +++ + +R + RII VF Sbjct: 302 RRMEVVG-NPNNITIYDDFAHHPSAIATTIDGLRKKVGDPRIIAVF 346 >gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 463 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 138/349 (39%), Gaps = 34/349 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR IQ G +F A+ G + DGH ++ A +GA VV S Sbjct: 24 VRNVAFDSREIQKGDLFFALKGTESDGHNYVDAAFKRGAAGAVVMSPVPY---------- 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++VD++ + L A ++ I+ +TG+ GK+S ++ +R + P Sbjct: 74 -PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALER-------MAP 125 Query: 150 TSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S N P+ LA+ +L + G+ H + L Q + I I Sbjct: 126 EKVHYSLKSYNN-HVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDVALITAI 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A + H + + A AK +FE LL AII D Y + + Sbjct: 185 APA-------HAAFFADETAIAEAKSEIFEGLLSG-GIAIIPHDSPYRDLLTAKVQEKKA 236 Query: 266 RVLSVGY-QGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S G+ +G I + + + VT S+ + F + E+ + NA+ + Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMAVLAVVD 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM 371 A+G D L L + GR + F G I +D ++ +N M Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASM 345 >gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium saccharolyticum WM1] Length = 456 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 60/363 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E + +S DSR ++ +FV ++G+K D H FI QA GA A++ S ++ Sbjct: 22 EEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAAAVLTSRHDAMD----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQ 138 S P + V++T+K L S + ++ +TG+ GK++ V + + Sbjct: 77 --SARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMVACALSARYSVYK 134 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + Q+G TIS A ++ + GV + + R Sbjct: 135 TPGNHNSQVGVPITISEIAPEDEI------------------GVIELGMSEPGELTVIAR 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + I++ TN+G HI+ TQ + K+ + ++ L + + DD + K Sbjct: 177 IAKIQMAV--ITNIGVTHIEQLGTQDNIYREKLTI-QDGLTEGGILFLNGDDQFLKSTKA 233 Query: 259 RAHNAGCRVLSVG------YQGKFIHLKK----VCAIHNKQQVTISVEGKDFDFLFPLPG 308 + GCR + G Y+ +HL++ A ++QV + + G Sbjct: 234 K---EGCRTIYYGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVR---------LAVMG 281 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 V NA+V+ + GI + LE R + T GG +D + ++ Sbjct: 282 SHNVLNAMVSLAVAAECGIPMEKAAKCLEAFTGFRNRQQIYQT---GGITVIDDTYNASP 338 Query: 369 LEM 371 + M Sbjct: 339 VSM 341 >gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila psittaci 6BC] gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, putative [Chlamydophila psittaci 6BC] Length = 436 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 43/371 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ V+ DSR ++ G +F A+ G DGH F+ QA GA A VVS Y F Sbjct: 12 KKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 66 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++VV++T + L I+ +TG+ GK++ +F + S + Sbjct: 67 -GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL--SSVYRVYA 123 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P S +++LT P + +A + + + S Q L ++ Sbjct: 124 SPKS------YNSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 172 Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261 TN+ H+ Q Q K + +LLPK+SP Y MK++ Sbjct: 173 VITNIADQHVMNFPDQGVQGIAEEKSHILRNSRVQLLPKDSPWYSY--------FMKQSV 224 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A + + + K + K V IS D DF P + N L++ L Sbjct: 225 SAEKFSFAFYDETADFYYKAI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 280 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTI 379 + + ++ L + P RFE + R G ++ A+ + MI L I Sbjct: 281 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSVRNGIQIINDAYNACPEAMIAALDAIPNP 337 Query: 380 TS-GRIIVVFG 389 + G++I++ G Sbjct: 338 SEGGKVILILG 348 >gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter turicensis z3032] Length = 452 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 86/329 (26%), Positives = 134/329 (40%), Gaps = 41/329 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I+ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 21 DTDIDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKLDI------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P LVV +TR A+ + + P ++A+TG+SGK+SV I G + + Sbjct: 74 --DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 G + TP Y L G H A + L + Sbjct: 132 AGNLNNDIGVPMTLLRLTPEHQYAVIEL------GANHQGEIAWTVSLTRPEAA------ 179 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVM 257 NL H++ + AK +F L P AI+ AD+ ++V Sbjct: 180 -LVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PANGIAILNADNNDWLNWQSVIGDRKVW 237 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + + N + + + IH+ + + T+ D D L PLPG V NAL Sbjct: 238 RFSPN----LATSDFSATNIHITS-----HGTEFTLRTPVGDVDVLLPLPGRHNVANALA 288 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 A+ L +A+G + L KL VPGR Sbjct: 289 ASALAMAVGAPLQAIKAGLAKLKAVPGRL 317 >gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TM 11079-80] Length = 453 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. 168] gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. JH642] gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase [Bacillus subtilis subsp. subtilis str. SMY] Length = 481 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/387 (20%), Positives = 167/387 (43%), Gaps = 39/387 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K+ E++ P Q+ + I+ V++D+R ++ +F+ + G + DGH F+ QA G Sbjct: 31 KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 89 Query: 69 EAIVVSSAYSLQDFSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ L D S N +++VD+T L A + ++ VTG++GK+ Sbjct: 90 AAV-------LWDRSVPNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKT 142 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + + + + +++ T +F +N + P + L+ + + + + Sbjct: 143 TTKDMIHAVLG----TQYRVHKTG--GNF--NNHIGLPLTV-----LAMPENTEIAVLEM 189 Query: 188 EASSHGLDQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 S+ G +D + +A TN+G H+ +++ AK+ + L KE Sbjct: 190 GMSAKG----EIDLLSRLANPDAAVITNIGESHMQDLGSREGIAEAKLEIINGL--KEDG 243 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 +IY D + +++ A++ + G + L+ V +++ +++G + F Sbjct: 244 VLIYIGD---EPLLQNAYSCQTKTYGTGTHNDY-QLQDVS--QSEEGTHFTIKGIENTFF 297 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P+ G+ V NA+ A GI + L L V R E + T+S I Y Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357 Query: 364 HTSNSLEMILKNIRTITS-GRIIVVFG 389 + S++ ++ ++ G+ ++V G Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLG 384 >gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1059] Length = 456 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 54/378 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I++G +FV + G + DGH FIP A AQGA A + S Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR---- 139 + ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 69 ERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLTTTYKT 128 Query: 140 ---SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L K+ I+ AD + Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLR-KDGLLIVPAD-----K 221 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ A C+++ G I L ++ N + + D P+ G++ NA Sbjct: 222 IINEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEERIDL--PVTGKYNATNA 278 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 ++AA + G+ + + +L + R E+ + G I D Y ++ +IL+ Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337 Query: 375 NIRTITS---GRIIVVFG 389 TI + GR + V Sbjct: 338 TFSTIPANPGGRKLAVLA 355 >gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster bacterium] Length = 419 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 55/387 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN V +D+R G +FVA++G D H +I A GA AI+ S +++N Sbjct: 25 INGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAVAIIASKQ---------VKTN 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ VD+T LS A+ ++A+TG++GK++ + + I P Sbjct: 76 LPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNMLANILNLK-------AP 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +N L P + + + + + + A+ G +H D Sbjct: 129 TLKTQG-NLNNHLGVPMTLLMLEPKHQFAV-----IEMGANHLGEIKHLRDITHPHIAVV 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN +D H + FN ++ E+ S I+ + ++ ++ S Sbjct: 183 TNT----LDAHIGEFGGFNNLVKAKGEIYHTNSQNIVNTNTTFTGDI------------S 226 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G G + N Q ++++ + L G+ + N+L A+ A+ ID Sbjct: 227 FGKDGDVF-----ASNINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYALDIDI 281 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVV 387 + + LEK GR + R G +D Y + S+ + + + G I V Sbjct: 282 NTIKKGLEKTQAEKGRLTII---HRQGLTIIDDTYNASPQSMRAAIDALLSF-DGEKIAV 337 Query: 388 FGC----GGDRDQGKRPI--MGKIALD 408 G G D + I + K++LD Sbjct: 338 LGSMAELGNDSKTFHQQIGKLAKVSLD 364 >gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus uberis 0140J] Length = 456 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 64/383 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + +N++ DSR I G +F+ + G + DGH FI A GA A FS Sbjct: 20 EFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 P L+V + K + A K +++AVTG++GK+S ++ + Sbjct: 69 EKEIPGKPYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKT 128 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KIVLEMGQDHMG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250 H L I K T +G H+++ +++ KM++ + + +S I+ A D Sbjct: 168 HLLSEIAKPHIAVVTLIGEAHLEFFGSREKIAEGKMQIIDGM---DSHGILIAPGDPIID 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 Y E ++ G + I++K + K +T + D PL G++ Sbjct: 225 PYLPE--------NQMLIRFG-DNQEIYVKDIQ--ERKNSLTFTTNVLDRAITLPLSGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + + ++ ++E LE + + R E+ + G I D Y ++ Sbjct: 274 NASNAMIAAYVGKLLAVEDDDIIEALENIQLTKNRTEWKKA-ANGADILSDVYNANPTAM 332 Query: 370 EMILKNIRTIT---SGRIIVVFG 389 +IL++ ++T G+ I V Sbjct: 333 RLILESFSSLTPENQGKKIAVLA 355 >gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 459 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I++V++DSR + G +F+A+ G + D H F A+ GA A++VS + N Sbjct: 30 ISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGALLVSRVLDI---------N 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +TR + AS + + ++A+TG+SGK+SV I ++ G + + G Sbjct: 81 FPQVVVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAG 139 >gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris BisB5] Length = 479 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 156/377 (41%), Gaps = 41/377 (10%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S DSR + G + AI G+ DGH F+ A+ GA VV A A Sbjct: 26 RDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVERAQ-----RAKFA 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++ P+LVVD+ L + I+AVTG+ GK+S ++ + G + Sbjct: 81 ADAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTSTKEALRGVLGAQGETH--- 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQ-GVTHVS-VEASSHGLDQHRLDGIKL 204 ++++SF +N P + A + Y + G+ H +E + H + Sbjct: 138 ---ASVASF--NNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMVRPHLV----- 187 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T + H+++ +A +AK +F L+P + A++ D+A K + A AG Sbjct: 188 ---IITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGT-AVLNRDNAMFKRLTDSARKAG 243 Query: 265 C-RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV+S G + A+H + V ++ G+D + +PG N+L Sbjct: 244 VGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAAA 303 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM-----I 372 +G D AL L + GR EF + + +D ++ +N M + Sbjct: 304 ETVGADLALAALALSHVQPAAGRGVRRALEFGQSEA----TLIDESYNANPASMVAALGV 359 Query: 373 LKNIRTITSGRIIVVFG 389 L + GR IVV G Sbjct: 360 LGQVPVGPQGRRIVVLG 376 >gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio mimicus MB-451] Length = 453 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 17/141 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR+I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQR---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ + + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 EADCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQD 159 G P + + S A+D Sbjct: 132 QGNFNNDIGVPLTLLRSTAED 152 >gi|261886110|ref|ZP_06010149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 277 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 12/139 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--SPIYLAKAL 174 ++ +TGT+GK++ A F RS +++G + T +F D ++ + + + L Sbjct: 62 LIGITGTNGKTTTA-FAIAFGLRS--LGYKVGISGTRGAFICDQQIADQGLTSCQILETL 118 Query: 175 SYLS---SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 SY+ G + +E SSH + Q+R++G+ FTN+ +DH+DYH++ Y + Sbjct: 119 SYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNSALKVFTNVSQDHLDYHKSCSEYARVES 178 Query: 232 RLFEELLPKESPAIIYADD 250 F++ +SP +I DD Sbjct: 179 SFFDD----DSPKLISGDD 193 >gi|261337529|ref|ZP_05965413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum DSM 20093] gi|270277931|gb|EFA23785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum DSM 20093] Length = 524 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 186/439 (42%), Gaps = 67/439 (15%) Query: 78 SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQ 134 + +D+SA + P L+V+N + LSL A+ Y +P++ L V G +G A F Q Sbjct: 81 ATEDYSA--YTAAPGLIVNNATQALSLLAAAYY-DYPQDELTVIGITGTKGKTTTAYFTQ 137 Query: 135 QICQRSGLSSFQIGPTSTISSFAQDN----------RLTTPSPIYLAKALSYLSSQGVTH 184 + L++ G + SS DN LTTP + + + G+ + Sbjct: 138 AM-----LNALSGGKCALFSS--NDNCIDGVHYVESDLTTPESLDAFRMMRQAREHGMEY 190 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKES 242 + +E SS +R+ G+ F N+ DH+ H T + Y K +++ S Sbjct: 191 LVMEVSSQSYKVNRVYGLHFDVAGFLNISPDHVSPIEHPTFEDYLYCK----RQIIANTS 246 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY---------QGKFIHLKKVCAI---HNKQQ 290 ++ AD + + +++ AH V G Q + L V A H++ Sbjct: 247 ALVLGADCDHVRLLLQDAHLHDVPVTLFGTEDSTLPDDGQSTPLGLVTVGAADERHDRFD 306 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEF 348 VT+ + +PG+F NA A L A G+ ++ + + L+++ + GR E Sbjct: 307 VTVFGDPAG-SIALAMPGDFNYVNAAAAIALIEAAGVPFNADVAYKALDEVRIA-GRMET 364 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCGGDRDQGKRPIMGK 404 + + VDYAH S+ +L + + G+ I ++ G G + +R M + Sbjct: 365 TRDDESNTVVIVDYAHNGISVTSVLDYV-DLQWGQEQPSITLITGSAGGKALDRREEMVR 423 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIRTAIEML 456 A D I T D+P +E+P + +I + +I+ +R +AI +AIE Sbjct: 424 AAEQRIDHFIFTTDDP-NEEPVQ---DICEHMASYIQAPDVRHSIILDRAQAIASAIEEA 479 Query: 457 NKQD-----VLVVAGKGHE 470 D V++ GKG E Sbjct: 480 RADDSGRLHVILALGKGEE 498 >gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya zeae Ech1591] gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae Ech1591] Length = 453 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 161/379 (42%), Gaps = 64/379 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I++VS+D+R + AG +FVA+ G K D H + A+ GA A++VS ++ Sbjct: 24 ISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGAAALLVSKHLPIE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVVD+TR L + A + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEMTASILRQCGNVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 +F +N + P ++ L Y + G H+ A + + ++ A Sbjct: 134 -----NF--NNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAM-------VRPEAA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--------DAYSKEVMKR 259 NL H++ + + AK +F L P + AII AD D + + + R Sbjct: 180 LVNNLAAAHLEGFGSLEGVAQAKGEIFGGL-PAQGVAIINADSNDEARWQDVLAGKTLWR 238 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---------DFLFPLPGEF 310 C + Y G + IS G DF PLPG Sbjct: 239 FSPQECDGVDF-YAG---------------DIRISERGTDFVLHSPMGDIAVTLPLPGRH 282 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--S 368 + NAL A L +A+G V LE+L V GR + G++ +D ++ +N S Sbjct: 283 NIANALAATALALAVGASLEAVKVGLEQLQAVSGRLFPIALAP--GKLLLDDSYNANVGS 340 Query: 369 LEMILKNIRTITSGRIIVV 387 + + + + R++VV Sbjct: 341 MTAAVHVLAEMPGYRVMVV 359 >gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 875 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 48/331 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I++VTGT+GK++ + I + G + +G TST + D + A + Sbjct: 480 IISVTGTNGKTTTVRMISHILKIYG---YTVGMTSTDGIYVDDVCIYKGDNSGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234 L+ + + +E + G+ + L G TN+ DH ID +T + K L Sbjct: 537 LADKNIDAAVLETARGGIVREGLGYDLADIGIITNISEDHLGIDGIETLEDLAFVK-SLV 595 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQ 290 E + K+ +++ ADD + + KRA +GK I H + + + Sbjct: 596 VEAVKKDGYSVLNADDPMTPYIAKRA------------KGKIIYFSMHENNLTIKRHLEN 643 Query: 291 VTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAGLCIAIGIDSAL 331 ISV KD D + GE + V NA+ + C I I + Sbjct: 644 GGISVYLKD-DTIVIANGEIIPIVKVDEIPATLNGKVLYNVENAMASISACYGIKIPVNV 702 Query: 332 VLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + + + PGRF S R+ VDY H + ++ ++++ R + R+I V Sbjct: 703 ISRGIRSFYCDENHNPGRFNIFNIGSF--RVLVDYGHNIDGIKKVIESARKLNPNRLIGV 760 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 G GDR +G+I + D + +D Sbjct: 761 IGVPGDRSDSSTLKVGEICGEGFDKVYIKED 791 >gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira maxima CS-328] Length = 468 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 38/297 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R +Q G +FVA+ G++ DGH F+ AIA+GA VV+ +++ P+ Sbjct: 33 ITTDTRTLQRGEVFVALQGDRFDGHDFVVAAIAKGALCAVVNREFAVS------HPEFPL 86 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + A + I+ VTG+ GK++ + + G Sbjct: 87 IPVADTLRAYQTLARSWRDRFSIPIIGVTGSVGKTTTKELISAVLSHHG---------KV 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F N + I + K L L S V +++ D R+ + G Sbjct: 138 HKTFGNYN-----NEIGVPKTLLELRSDHDFAVIEMAMRGPGEIADLTRI--ARPTVGVI 190 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 N+G HI ++ A AK L E +P S A++ D+ + +M A + Sbjct: 191 VNVGTAHIGRLGSEDAIARAKCELLAE-MPDTSIAVLNHDN---RRLMSTATQVWSGTTI 246 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G +G + + + TI V G + PLPG N L A + AI Sbjct: 247 TYGLEGGILQGELLG------HETIRVAG--IELPLPLPGSHNASNFLAALAVLRAI 295 >gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga petrophila RKU-1] gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermotoga petrophila RKU-1] Length = 426 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 100/455 (21%), Positives = 183/455 (40%), Gaps = 75/455 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ ++ G +FVA+ G + DGH FI +A+ GA A++ T+ S+ I +V Sbjct: 12 NSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAE--------RKTVNSDR-IFLV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +++ L+ A G ++ +TG+SGK++ + + + + S Sbjct: 63 ESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLK------------NKRSV 110 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F + T + L+ L+ + + + + AS G H N+G Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNA 169 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQ 273 H+++ T++ KM + + + ++ D +EV C + L G + Sbjct: 170 HLEFFGTRERIMETKMEIIKHSKENATAVTLFDDPDLRREV-------PCYRKTLFFGKE 222 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGID 328 G LK TI+ E + FD LF L G + Q+ N +AA LC+ + Sbjct: 223 GGDSVLKDWWYYEGS---TIA-EFEAFDSLFTVKLSGYWNGGQLLN--IAASLCVMRALG 276 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 + + L L VPGRF + + VD + ++ S+E +L+ G Sbjct: 277 ETVDIFDLASLKTVPGRF---NVREKKDVLIVDDTYNASPEAFQTSIEALLR-----FPG 328 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEK 427 R V G G+R + +G+ L++ D + P +S+DPEK Sbjct: 329 RRFAVVGAMKELGERSKEFHEELGE-RLNVLDGVYIFLSEPEAEWIKSKKIILKSDDPEK 387 Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 I ++ + + K +R I +EM K+ Sbjct: 388 IAKDLASRVTEGDVVLFKASRAVRIEKVLEMFEKE 422 >gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. C56-T3] Length = 458 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 31/334 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W ++ VS+D+R IQAG ++V + G +GH F+ +A +GA A++ + + Sbjct: 21 EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAAAVLWA------ERE 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T P++VVD+T L A+R + ++ VTG++GK++ + + + Sbjct: 75 GTPPEGVPVVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLS----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201 +++ T +N + P L+ LS +G VE G + RL Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258 I K A TN+G H+ +++ AK+ + L +Y D ++ V K Sbjct: 179 IAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G Q + V ++ G+ P+ G+ VYNAL A Sbjct: 237 LPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHHVYNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + GID + L +L V R E V T Sbjct: 295 IAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTK 328 >gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca ATCC 29256] gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca ATCC 29256] Length = 445 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 114/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum KM20] Length = 444 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 164/374 (43%), Gaps = 64/374 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR ++ G +FVA+V ++ DGHL+I QA+A GA A++V ++ I + Sbjct: 22 ITGVAFDSRQVKIGDLFVALV-SEHDGHLYIQQALANGAVAVLVDDQHA-------ITPD 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF-- 145 P ++V +T L+L Y + N ++A+TG++GK++ I + +F Sbjct: 74 IPAIIVPDT--LLALQRLGQYRREMVNPKVIAITGSNGKTTTKDMTAAILS-TKFKTFKT 130 Query: 146 ------QIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +IG T+ S D L + L+ LS + +++ Sbjct: 131 PENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPDIAI----------- 179 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 T +G HI++ QT+ AK+ + + L +S I+ + + ++ Sbjct: 180 ----------ITMIGEAHIEFFQTRDNIARAKLEITQGL---KSDGILLV--PFDEPLLT 224 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 +A R Y G +KV AI VT + + F P+ G + V NAL A Sbjct: 225 QAAVKSDR----QYFG-----EKVSAIQALATVT-TFTFEQQKFAIPVMGRYNVMNALAA 274 Query: 319 --AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 AG ++I + A + L+ + R E + T S+G + D Y ++ +L Sbjct: 275 ISAGKLLSIDLKHAAL--ALKNFDLTKNRTERLVT-SQGVVLISDVYNANPTAVAAVLST 331 Query: 376 IRTITSGRIIVVFG 389 ++++ + R VV G Sbjct: 332 LKSLPARRKYVVLG 345 >gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus somnus 2336] Length = 463 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 28/323 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +VS+D+R +F A+ G D H ++ QA+ QG A+VV + + Sbjct: 25 VEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVEQGCSAVVVERECDV---------D 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145 P L+V +TR L A L K +A+TG+SGK++V AS +Q++ Q F Sbjct: 76 VPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKTTVKEMTASILQKVVQDPDAVLF 135 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 G +F +N + P + L + + + A+ G + +D ++ Sbjct: 136 TQG------NF--NNDIGVPLTL-----LRFEPKHQFAVIELGANHQGEIAYTVDLVQPD 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAG 264 N+ H++ + + AK +++ L K + Y + K ++ +A Sbjct: 183 VALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIMEYEHSVLWKKYWHEQIGDAE 242 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R+ S + + +++ Q + E + + P G V NA+ AA L + Sbjct: 243 TRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEINLPYLGLHNVSNAVAAASLAL 302 Query: 324 AIGIDSALVLEHLEKLHVVPGRF 346 +G+ + LEK V GR Sbjct: 303 CLGVSLEQIKAGLEKKSYVKGRL 325 >gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gluconacetobacter hansenii ATCC 23769] Length = 475 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 127/320 (39%), Gaps = 27/320 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + VS D+R + AG IFVA+VG DGH I +A+ GA ++ ++D Sbjct: 35 RATGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVEDAR----- 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 IL+VD+T L+ A+ + ++AVTG+ GK++ ++ G + + + Sbjct: 90 ---ILLVDDTLSALNAMAAFARTRFAGRMIAVTGSVGKTTTKDMLRHALGACGPTHWAVA 146 Query: 149 PTSTISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +N P + A A+ + G+ + A + + + I I Sbjct: 147 --------SYNNHWGVPLTLARLPASAMFCVCEVGMNNPGEIAPLAQMVRPDVAVITTIT 198 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G+ H+ + + +A K L LP++ AI+ D +A N G R Sbjct: 199 GA-------HLGHMGSLEAIAREKSDLIAA-LPRDGVAIVPDDVTGMAIFATQARNHGAR 250 Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + G + G ++ + ++G PG NALVA A+ Sbjct: 251 LWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNALVALTAAYAV 310 Query: 326 GIDSALVLEHLEKLHVVPGR 345 G D A + L GR Sbjct: 311 GADMACAVRGLADFRPGAGR 330 >gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC586] Length = 453 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVER---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 DADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 132 QGNFNNDIGVPLTLLRSTAEDD 153 >gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus R309803] Length = 458 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/330 (23%), Positives = 137/330 (41%), Gaps = 33/330 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D A N Sbjct: 27 IQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESGAVATL-----WMKDV-ANPPEN 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V++T L + A + ++ VTG++GK+S V + + F++ Sbjct: 81 LPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKDIVTSLLA----TKFKVQK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I L+ + V + + SS G + + A Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+ +++A AK+ + L +E +Y D N ++ Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QEGGVFVYNGDEPLLTNRVPEMNLMAETVT 245 Query: 270 VG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G Y + L + H K + ++ F P+ G+ VYN L + + Sbjct: 246 FGDARANDYYPTTVTL-QATGTHFKMN-----KDENISFYLPVLGKHNVYNTLASMAIAK 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ + + L L + R E V T+S Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodobacteraceae bacterium KLH11] Length = 464 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/364 (23%), Positives = 147/364 (40%), Gaps = 31/364 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R +Q G +FVA+ + DGH F+ QA+ +GA A +VS + + P+ Sbjct: 26 VSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------IPEGVPEDAPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+VD+ + L + ++ VTG+ GK+S + I + G + ++ Sbjct: 79 LIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTKEMLASILETRGKTH------AS 132 Query: 153 ISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVS-VEASSHGLDQHRLDGIKLIAGSF 209 ++S+ +N P + + + Y + G+ H + +H H G Sbjct: 133 VASY--NNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAHQARPH--------VGLV 182 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H++ + K LF+ L + AI+ AD ++ + RA G +++ Sbjct: 183 TTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGT-AIVNADIEHAGILRSRAQARGAKIVE 241 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + L V + + V + F G NAL A C+ +G+D Sbjct: 242 FGRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAACVELGVDL 301 Query: 330 ALVLEHLEKLHVVPGR-FEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTITSGRII 385 + L V GR V G RI +D ++ +N S+E L + R I Sbjct: 302 DQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAASAGQRRI 361 Query: 386 VVFG 389 G Sbjct: 362 AFLG 365 >gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus kaustophilus HTA426] Length = 458 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 31/334 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W ++ VS+D+R IQAG ++V + G +GH F+ +A+ +GA A++ + + Sbjct: 21 EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKGAAAVLWA------ERE 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T P++VVD+T L A+R + ++ VTG++GK++ + + + Sbjct: 75 GTPPEGVPVVVVDDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTKDMIAALLS----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201 +++ T +N + P L+ LS +G VE G + RL Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258 I + A TN+G H+ +++ AK+ + L +Y D ++ V K Sbjct: 179 IARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G Q + V ++ G+ P+ G+ VYNAL A Sbjct: 237 LPLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHYVYNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + GID + L +L V R E V T Sbjct: 295 IAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTK 328 >gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea NRRL 2338] gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea NRRL 2338] gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea NRRL 2338] Length = 490 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 108/388 (27%), Positives = 151/388 (38%), Gaps = 45/388 (11%) Query: 65 AQGAEAIVVSSAYSLQDF---------SATIRSNTPILVVDNTRKFLSLFASR----LYG 111 AQGA + A +++ F S IR + P LV R L + L Sbjct: 65 AQGAHIALGHRAENIEQFDGDPTAVVVSTAIRRDNPELVAAQERGVPVLRRAEALAALMA 124 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYL 170 H + V GT GK+S S + Q L SF IG S N +++ Sbjct: 125 DH--RVACVAGTHGKTSTTSMLTVALQHCRLDPSFAIGGDLNESGA---NAHHGDGGVFV 179 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 A+A S V SV TN+ DH+D+H T +AY Sbjct: 180 AEADESDGSFLVFAPSVAV-------------------VTNVEPDHLDHHGTAEAYTEVF 220 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HN 287 R E + P I ADDA + + +A AG RV G++ ++ H Sbjct: 221 QRFVERIEPG-GVLIACADDAGAALLADQAEAAGVRVRRYGHEVTADGDARMVGYRPEHG 279 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 VT+ V G D +PGE NA+ A + +G +LE L V RFE Sbjct: 280 SGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLELGAPLEGLLEGLAAFGGVRRRFE 339 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIA 406 F G + G R+Y DYAH ++ L+ R + GR++VVF A Sbjct: 340 FKG-RADGVRVYDDYAHHPTEVDAQLRAARPVVGDGRLVVVFQPHLYSRTAAFSGEFATA 398 Query: 407 LDLADIAIVTDDNPRSEDPEK-IRAEII 433 L LAD +V D EDP+ + E+I Sbjct: 399 LGLADEVVVLDVYGAREDPQPGVTGELI 426 >gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kronotskyensis 2002] gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 49/362 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G E ++ ++A S +D + + L + +FL L ++ +N++A+ GT G Sbjct: 59 HGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----RNFKNVIAIAGTHG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182 K++ S + I +++ + PT + +F + N + + +A Y+ S Sbjct: 113 KTTTTSMIGYILKKANYN-----PTILVGAFVKQLGGNFVIGSKDYLVVEACEYVDS--- 164 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 K G N+ DH+DY + + R F +P Sbjct: 165 ----------------FLKFKPTIGVILNIDNDHLDYFKDIDS-IKESFRKFAMKIPSSG 207 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301 + DD K+V+ + H +V+ + + K I + +N V+ K+ + Sbjct: 208 FIVANCDDKNVKDVISKLHT---QVVCISTKEKADIFADNIS--YNDGYYEFDVKNKNNE 262 Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L +PG VYNAL A + + I+S + + L + R E VG G Sbjct: 263 ILAHIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEFCGASRRLEKVG-EFNGIY 321 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415 +Y DYAH ++ L ++ I+ G+++ +F + ++ + A L LAD IV Sbjct: 322 LYDDYAHHPTEIKATLATLKKISEGKVLAIF--QPHTFSRLKTLLNEFAESLKLADKVIV 379 Query: 416 TD 417 TD Sbjct: 380 TD 381 >gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 452 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSCPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ LP+ AI+ AD+ + V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAIMNADNNDWLNWQSIIGDRLVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella marina EX-H1] gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella marina EX-H1] Length = 419 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 84/387 (21%), Positives = 161/387 (41%), Gaps = 61/387 (15%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +++AVTGT GKS+ + + I G IG TP S Sbjct: 81 SVIAVTGTDGKSTTSKLIHHII---GEEKADIG-----------GNYGTP--------FS 118 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 + S+G V +E SS + + + + F N DH+D+H+ Y +K RLF Sbjct: 119 DIVSEGKDTVVLELSSFQI--YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKYRLFR 176 Query: 236 ELLPKESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + +E PA++ DD + K+ + L +G A ++ ++ + Sbjct: 177 N-MKEEDPAVLNFDDQVVRNTPKKGKRYYFSLSPLPDNLEG---------AYYDGSEIVL 226 Query: 294 SVEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + G F F L G + N + + GID + E L+ +P R E+VG Sbjct: 227 KINGFKFKFGLSDIHLKGIHNIQNIMASVVTAYIYGIDPETIEERLKSFKPLPHRMEYVG 286 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIAL 407 + + G Y D T +++ + K +++ R+I++ G GGD + ++ + Sbjct: 287 SIN-GVDFYNDSKAT--TVQAVKKAVQSFDGKRVILITGGINKGGDFSDLRDELLNSV-- 341 Query: 408 DLADIAIVTDDNPR--SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 ++ I+ D S + ++AEI + +A+ TA + K DV++++ Sbjct: 342 --KEVFIIGRDRKSIYSMIKDYVKAEIKESLE---------DAVNTAFKKAEKGDVILLS 390 Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492 G + + N +++ + I+R++ Sbjct: 391 -PGCASFDMFKNYQERGEIFKSIVRKL 416 >gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita DSM 44233] gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM 44233] Length = 482 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 106/427 (24%), Positives = 161/427 (37%), Gaps = 60/427 (14%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I G A+VVS+A + I VV +L R + V GT Sbjct: 76 IPGGPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAALMTDR-------RSVCVAGT 128 Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLS 178 GK+S S + Q +GL SF IG T S + +++A+A S+LS Sbjct: 129 HGKTSTTSMLTVALQHAGLDPSFAIGGELTGSGLGAHHGQ---GDVFVAEADESDGSFLS 185 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S HG TN+ DH+D+H T +AY +F++ + Sbjct: 186 F----------SPHG-------------AIVTNIEPDHLDHHGTAEAY----TAVFDQFI 218 Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVT 292 + P +I ADD S + R R+++ G + + + V Sbjct: 219 ERIEPGGFLVICADDPGSAALAARVRLR--RLVTYGRAADAVVRLAVDPASDPATGEPVV 276 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 +G +PG+ + NA+ A + +G+D+ L+ L V RFE G Sbjct: 277 TLADGTAVPLRLTVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGYTGVRRRFELKGV- 335 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 + G +Y DYAH + L R + GR++VVF AL A Sbjct: 336 AGGVTVYDDYAHHPTEVAAQLAAARGVVPADGRLVVVFQPHLYSRTATFATEFGAALGTA 395 Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 D+ +V D EDP E I A + G P R A R E++ D+++ Sbjct: 396 DLVVVLDIYGAREDPRPGVTGELITAAVPAG-PDVRYHPERSTAARFVAEIVRAGDLVIT 454 Query: 465 AGKGHET 471 G G T Sbjct: 455 MGAGDVT 461 >gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V51] Length = 453 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQR---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Granulibacter bethesdensis CGDNIH1] Length = 459 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 152/366 (41%), Gaps = 41/366 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R ++ +FVA+ G+ DGH A+A+GA ++ A P Sbjct: 27 VSIDTRTLEPADLFVALQGDNGDGHDHAEAALARGAAGVL-----------AHRDGPGPR 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V++T L + + AVTG+ GK++ + R+ L+ F GP Sbjct: 76 LLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKTTTKEML-----RTALAPF--GPVH- 127 Query: 153 ISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +++A N P+ LA+ A S + G+ H A L + + I Sbjct: 128 -AAYASYNNHWG-VPLTLARLPESARSCVVEIGMNHAGEIAPLAALARPHVAII------ 179 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T + R HI + + +A + K LF L + AI+ AD +M +A A RV+ Sbjct: 180 -TTVERSHIGHLGSIEAIADEKAALFSGL-AADGVAIMPADSPMLPRLMAQA--APHRVM 235 Query: 269 SVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + L+++ A + ++ I V G+ PG NAL A A G Sbjct: 236 TFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAALSAVDAAGF 295 Query: 328 DSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGR 383 D LE H + GR + N G + +D Y +S S+ L +R + R Sbjct: 296 DPHPAAAALENFHALAGRGAKRSIALND-GQAVLLDESYNASSASIRAALDVLRLTPASR 354 Query: 384 IIVVFG 389 IVV G Sbjct: 355 RIVVLG 360 >gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae 12129(1)] gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Vibrio cholerae LMA3894-4] Length = 453 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas sp. JS666] Length = 459 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 165/404 (40%), Gaps = 43/404 (10%) Query: 4 QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 Q L + L+ S+ P++ V +D+R +QAG +FVA+ G + D H F+ QA Sbjct: 6 QALGWLPSARLVGDGSVKPLR--------VHTDTRSLQAGDLFVALKGERFDAHDFLAQA 57 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 AQGA A + + + P L V +++ L A+ + ++AVTG+ Sbjct: 58 KAQGAVAAIAHHGLAA--------AGLPGLEVADSKLALGQLAAGWRSQFSLPLIAVTGS 109 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++V + I + + +FA + L + L L +S V Sbjct: 110 NGKTTVTQMIAAILR----------AWKSTQAFATEGNLNNDIGVPL-TLLRLRASHAVG 158 Query: 184 HVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V + + G L G+ L+ N R+H+++ T +A + + L Sbjct: 159 VVELGMNHPGEIAYLAALAKPGVALV----NNAQREHLEFMATVEAVARENGSVLQA-LG 213 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + A+ ADD Y+ + R RVL+ G + + QV Sbjct: 214 TDGIAVFPADDDYT--AIWRGLAGARRVLTFAQTGPADVTAQAQWSGDCWQVAARTPAGP 271 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI- 358 DF + G V NAL A +A G+ ++ L + V GR + T R+ Sbjct: 272 LDFPLHIAGRHNVKNALAATACALAAGVPLPVIAAGLSEFAPVKGRSRAL-TVRLANRVV 330 Query: 359 -YVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 +D + +N S+ ++ + + + R++V+ G DQG + Sbjct: 331 TLIDDTYNANPDSMRAAIEVLAELPAPRLLVMGDMGEVGDQGPQ 374 >gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychrobacter cryohalolentis K5] gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychrobacter cryohalolentis K5] Length = 482 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 6/108 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R I+ G IF+A+ G+ DGH ++ AIAQGA A +V+ + D ++ P Sbjct: 51 IATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIVARPIATADANS-----IPQ 105 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 LVV +TR L A+ +H ++A+TG+SGK++ + I R Sbjct: 106 LVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGR 153 >gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter marburgensis str. Marburg] gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter marburgensis str. Marburg] Length = 1002 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 127/312 (40%), Gaps = 48/312 (15%) Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 DG++++AG TNL DH+D + Y + + L+ E ++ DD ++ Sbjct: 187 DGLEIVAGVVTNLTPDHMDEFRDYDEYIERNFSI-KNLIAPEGVLVLCGDDPVIAGLLDD 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT------ISVEGKDFDF----------- 302 V +G + K + + + + QV+ + +EG +F Sbjct: 246 LEVKSV-VYGLGNERKVEFMDRTFSGSAEPQVSATDIDLMGLEGSEFTLKVSEIPTALCS 304 Query: 303 ---------------LFPL--------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + PL PG F V NAL A + + +G D + LE+ Sbjct: 305 MCGSLNCGEHDGVIHIGPLTERIKLRVPGLFNVENALAAITVALVLGFDIRDIKNALEEF 364 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 + GRFEF+ G +Y+D AH S+E + + I GR+I+ + Sbjct: 365 RGIKGRFEFI-DQVDGVPVYMDAAHNPESMEKLFEGIE--FKGRLIISLDNPDTLTVRDK 421 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML 456 +G+I + AD+ IV+ N + + A + G G I+ + ++IR A+E+ Sbjct: 422 YRIGQILGERADVLIVSGKNETTGKIDMEAASEVEGGAGRDKTIKTESVYDSIRRALEIA 481 Query: 457 NKQDVLVVAGKG 468 K D ++ G G Sbjct: 482 EKGDTVLHLGPG 493 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 45/218 (20%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRL------------------FEELLPKESPAIIYA 248 G TN+ RDH+ + Y K + F E L +E A++Y Sbjct: 695 GVITNISRDHLSGGRRFSDYIECKREIIDTAEVIVLNADDPIVASFAEGL-REERAVLYG 753 Query: 249 DDAYS--------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + +E K +N ++G+ G + + VC Q +++E Sbjct: 754 IQSMESAPVMPEGRECPKCGNNLKYTRRTMGHLGDY---QCVCGYRRPQPEVMALEASAD 810 Query: 301 DFLFPL-----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 F + PG F VYNAL AA ++G+D ++ +E V GRF+ + Sbjct: 811 GFKLVIGSEMRNVKLRTPGIFNVYNALAAAAAAWSLGVDMDDIVRGIESFSGVRGRFQKL 870 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 + R+ +DYAH + +++ ++ T GR+IVV Sbjct: 871 MDSP---RVILDYAHNPAGVRAVMQELKG-TDGRLIVV 904 >gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae TMA 21] Length = 453 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Verrucomicrobium spinosum DSM 4136] Length = 460 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 159/370 (42%), Gaps = 39/370 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR IQ G +FVA+VG K D H F+PQ GA A++VS ++ A + Sbjct: 29 VNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAAVIVSRLP--ENVEAL---GCGV 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T L A ++ +TG++GK+S V + ++ +Q+ +T Sbjct: 84 IEVPDTLLALQQLARAYRELLNPLVIGITGSNGKTSTKDLVAAVLRK----KYQV--CAT 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 + +F +N + P I L + + + HG + L GI + A TN Sbjct: 138 LGNF--NNHIGLPLTI-----LRMEEGDNCAVLEMGMNHHG-EIAVLAGIARPDAAIITN 189 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G HI+Y +++ K L +P ++ A+D +S + R+H RV+ G Sbjct: 190 IGVAHIEYMGSREGIAQEKGTL-AAAVPHGGVVVLNANDDFSSSIAARSH---ARVVLAG 245 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAI 325 + V A + S +FD P+PGE V NA +AA + Sbjct: 246 -----VGEGDVVATLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALAAAVGWHF 300 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383 G+ + L ++ + GR + RG + D Y +S+ LK + + GR Sbjct: 301 GVVPQDIAAALGEVQLTKGRVQV--KFWRGVTVLDDSYNANPDSMRAGLKTLAALQIPGR 358 Query: 384 IIVVFGCGGD 393 + V G G+ Sbjct: 359 RVAVLGRMGE 368 >gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dechloromonas aromatica RCB] Length = 456 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 158/369 (42%), Gaps = 32/369 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I G +F+A+ G D H F+ AIA GA A++V+ + + + Sbjct: 23 IDGVSTDTRAITEGQLFIALAGENFDAHDFLAPAIAAGATALMVAD-------ESKVPTG 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVD+TR L A+ K ++AVTG++GK++ V I + ++F Sbjct: 76 VPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKEMVAAILK----AAFGAAV 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLI 205 ST + D L P+ L L +S + + + G L + LI Sbjct: 132 LSTRGNLNNDIGL----PLTL---LGLRASHRAAVIEMGMNHPGEIGYLAPIGAPTVALI 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN R H++ K +F LP A+I ADDAY+ + R G Sbjct: 185 ----TNAQRAHLEGMGDLDEVAREKGSIFLG-LPANGVAVINADDAYAG--LWRGMAGGR 237 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V + G KV + + +S D + +PG NA+ AA C+A Sbjct: 238 PVRTFGIDNAADVSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAACLAA 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI 384 GI V+ LE V GR + T +G I D Y +S+ + ++ T GR Sbjct: 298 GIPMVAVIAGLEAFSGVKGRLQRR-TGKQGAEILDDTYNANPDSVRAGI-DVLAATIGRK 355 Query: 385 IVVFGCGGD 393 ++V G G+ Sbjct: 356 LLVLGDMGE 364 >gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 517 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 64/468 (13%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290 +++ ++ AD ++ + + A AG V + V + Sbjct: 239 -RQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297 Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345 + + D D+ + G+F NA A + A+G+ D A L +E + + GR Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIA-GR 356 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416 Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453 + A + +A+ +D D E I +I + G+I +R+ AI AI Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPI-IDICMEMQGYITNKDVVSTVISDRLTAITNAI 471 Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHRKHVPFDGDDHVVERMFGL 517 >gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter violaceus PCC 7421] Length = 450 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 144/365 (39%), Gaps = 47/365 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +D+R + G +FVA+ G + DGH + QA+A GA ++ ++ Sbjct: 25 VRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGAALVIAERPVAV---------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +T + A + ++AVTG++GK++ ++ + +G + P Sbjct: 75 -PHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTRELIRAVLATAGPV---LAP 130 Query: 150 TSTISSFAQDNRLTTPSPIY-LAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++N + P + L A Y + +G ++ A + Sbjct: 131 PGN-----ENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPN--------- 176 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G HI + A +AK L E LP A++ +D +R H AG Sbjct: 177 -VGVITNVGSAHIGRLGSHAAIADAKCELLAE-LPCSGIAVLNGEDERLLSTARR-HWAG 233 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL+ G + + + V + V+G F+ PLPG N L A + Sbjct: 234 P-VLTYGLDAGDV-------MGSFDGVHLHVDG--IAFIPPLPGRHNHLNFLAALAVARH 283 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ V E L+ L + GR + I Y S L + + GR Sbjct: 284 LGLELLQVRERLKDLQLPTGRSRVIALEGDVQLIDETYNSAPESARAALAWLAGL-PGRR 342 Query: 385 IVVFG 389 I V G Sbjct: 343 IAVLG 347 >gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM 17244] gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM 17244] Length = 466 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 33/314 (10%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138 +SA IR N P V + L L S G ++ + +AV+GT GK++ +S + + Sbjct: 74 YSAAIRENNPERVEGKNKGILELERSVFLGLISRYYKRTIAVSGTHGKTTTSSLMSLVFL 133 Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + L S IG T+ ++R+ S ++ +A ++ S H S H Sbjct: 134 NADLDPSISIG--GTLKKINGNSRVG-DSDYFVIEACEFVDS--FLH-----SRH----- 178 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G+ N+ +DH+DY R F E+ PK+ ++ DD + V+ Sbjct: 179 -------FVGTIQNIEKDHLDYFTGGIEQIKESFRKFAEITPKDGMLVVNGDD---ENVL 228 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDF--DFLFPLPGEFQVYN 314 C+++ G + K V +G +F F +PGE V N Sbjct: 229 DILDGLECKIVKAGLSDSNDFVAKNITYDKFGNPNFDVYKGGEFYHKFELNIPGEHNVLN 288 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL + ID ++ + ++ RFE G + DYAH L++ + Sbjct: 289 ALSVVAVSDFFMIDKEVINDSFKEFTGAKRRFEKRGI-VNDITVIEDYAHHPTELKVTID 347 Query: 375 NIRTITSGRIIVVF 388 + ++ V+F Sbjct: 348 ACKNYEHNKLFVIF 361 >gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 462 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 15/144 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N V +DSR G +F + G + DGH F QA +GA AIV +D + N Sbjct: 26 VNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAH-----RDLGSI--QN 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 TP+L VD+T K L K +L +TG++GK++ + ++ + + F +G Sbjct: 79 TPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEILAEVLK----TRFTVGK 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKA 173 +N+L P + + K Sbjct: 135 NHK----NWNNQLGLPLSLLMQKG 154 >gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas testosteroni S44] gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas testosteroni S44] Length = 634 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 139/357 (38%), Gaps = 69/357 (19%) Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153 L LFA L G + +L +TGT+GK++V S Q+ + GLS + IGP+ Sbjct: 232 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLD 291 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + A+ + T P L E SS LD R G + A + N+ Sbjct: 292 TLSARIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 332 Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIY------------------ADDA 251 +DH+D+H QAY +AK +F E +L +E P ++ A + Sbjct: 333 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVS 392 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---- 307 + ++ +R + G V++ + + H + + D + +P Sbjct: 393 FGGDMPRRPGDFGLEVVN--------GMTWLVRAHEADETSKGKNADDLHIVRLMPADAL 444 Query: 308 ---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYA 363 G NAL A L G A +L L + P R + VG R G + Y D + Sbjct: 445 RIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDS 501 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 +N + + RI+V+ G G + Q P+ ++ + ++ D P Sbjct: 502 KGTNVGATVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAP 557 >gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermobispora bispora DSM 43833] Length = 455 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 36/230 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F AI G++ DGH F +A A GA A++ S + P ++V Sbjct: 34 DSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLASRPV-----------DAPAVIV 82 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 + L+ A+ + + P ++ VTG+ GK++ + + +R G + +G Sbjct: 83 RDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLLAGLTERIGPTVAPVG------ 136 Query: 155 SFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + +N + P + A + LS++ V H++ R+ ++ G Sbjct: 137 --SHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAY--------LTRIAPPRI--GVV 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 N+G HI ++A AK L E LP++ A++ ADD Y +E+ R Sbjct: 185 LNVGAAHIGVFGGREAIAKAKGELVEA-LPEDGVAVLNADDPYVREMAGR 233 >gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC 27064] gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus ATCC 27064] gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptomyces clavuligerus ATCC 27064] Length = 479 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 32/232 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + G +F A G + DGH F +A+A GA A++ AT P Sbjct: 31 VVTDSRRVGPGSLFTAFAGERADGHDFAERAVADGAVAVL-----------ATRPVGVPA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+ L A + + +A+TG++GK+S + Q+ +R G + + P Sbjct: 80 IVVDDVTAALGALARHVVERLGTTTVALTGSAGKTSTKDLIAQLLERKGPTVY---PEGN 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR-LDG-IKLIAGSF 209 + +N + P L+ L + + H+ +E + + R L G + G Sbjct: 137 L-----NNEIGLP--------LTALRADESTEHLVLEMGARYIGDIRYLTGLVPPRIGLV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 N+G H+ +++ AK + E L E A++ ADD + + +R Sbjct: 184 LNVGTAHLGEFGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAMAER 235 >gi|297516905|ref|ZP_06935291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli OP50] Length = 153 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 50/93 (53%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P++ + + LS A R Y + +N+ V Sbjct: 80 HGVPVIYLSQLNERLSALAGRFYHEPSDNLRLV 112 >gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcaceae bacterium D16] Length = 461 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 78/353 (22%), Positives = 140/353 (39%), Gaps = 32/353 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q E ++ V +DSR I G +F+ +VG + DGH +I A+ GA + + + D+ Sbjct: 22 QDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEAGAAGCLTARVRT--DY- 78 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 R + + V NT + L A+ + + +TG+ GK++ + + Sbjct: 79 ---REDKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVGKTTAKDMIAAVL------ 129 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S + T +F + L P+ L + L + GV + ++ G + D ++ Sbjct: 130 SVKYKVLKTEGNFNNNIGL----PLTLLR-LDHTHQVGVLEMGMDKP--GEIDYLSDIVR 182 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--H 261 G TN+G HI+ +++ F AK L + + ++ ADD + + Sbjct: 183 PEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKTPVQ 242 Query: 262 NAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 C + Y+ + V IH I+ + D P GE +Y L+AA Sbjct: 243 AVFCGKAEDADYRAQVTGGDGVSHIH----CHITTPKMERDVKIPALGEHMIYPTLIAA- 297 Query: 321 LCIAIGIDSALVLEHLEK--LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 A+G L + +E VP R G +D ++ +N M Sbjct: 298 ---AVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDDSYNANPQSM 347 >gi|581175|emb|CAA39334.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli] Length = 124 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 50/93 (53%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 20 RALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREM 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P++ + + LS A R Y + +N+ V Sbjct: 80 HGVPVIYLSQLNERLSALAGRFYHEPSDNLRLV 112 >gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan alanyl ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 452 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 45/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + PI L + L++ V + + A+ G + + A Sbjct: 134 -----NFNNDIGV----PITLLR-LNHDYDYAV--IELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK ++ LP+ AI+ AD+ + V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAIMNADNNDWLNWQSIIGDRLVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 NA + + IH+ + + T+ D L PLPG + NAL AA Sbjct: 241 PNAA----NSDFTAANIHVTS-----HGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +A+G + L L VPGR + + ++ +D A+ +N S+ ++ + Sbjct: 292 LSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN--QLVLDDAYNANVGSMTAAVQVLSE 349 Query: 379 ITSGRIIVV 387 + R++VV Sbjct: 350 MPGYRVLVV 358 >gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius LAA1] gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius LAA1] Length = 463 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 136/330 (41%), Gaps = 45/330 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+ +V S+A + I V+ + L R+ +AVTG G Sbjct: 62 EGADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG-------IAVTGAHG 114 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S + +++GL +F +G + + DN P +A+A Sbjct: 115 KTTTTSMIAFTMEQNGLDPTFIVG---GVVADLGDNAKAGKGPFVVAEA----------- 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKE 241 S G H I ++ TN+ DH++++ + F +R +E + P E Sbjct: 161 ----DESDGSFLHYRPAIAVV----TNVEPDHLEHYDGK---FENLVRAYETFIRQIPSE 209 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ ADD +E+ A CRV++ G+ + I + V + + V G+ Sbjct: 210 GLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVLVNGEFV 266 Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L LPG+ V NAL A +C+ +G+ L + H RF+ V GG + Sbjct: 267 GTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVA--EMGGVLI 324 Query: 360 V-DYAHTSNSLEMILKNIRTITSGRIIVVF 388 V DYAH + + ++ T RI+ VF Sbjct: 325 VDDYAHHPTEIRATIAAAKS-TGRRIVAVF 353 >gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Citrobacter rodentium ICC168] Length = 452 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKAGGAGALLVSR---------PLDCD 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+V +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMAAAILSQCGNTLYTAG 133 >gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii A2-165] Length = 454 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 27/251 (10%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 L+ L++ + E + V++DSR + G IFVA G K DGH F +A+ GA +V+ Sbjct: 9 LLEGLAVNALAQCETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVL 68 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 + + ++ D+ + L A+ HP+ ++ VTG+ GK++ Sbjct: 69 NHPVE------GVPEEKSVICPDSYHAMMVLGANYRSQFHPK-VVGVTGSVGKTTTKQMT 121 Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASS 191 + ++ F STI + Q+N L P ++ + K Y V + + S Sbjct: 122 Y-----AAIAGF----GSTIKTEGNQNNELGLPRTMFRIGKETQY----AVVEMGM---S 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 H + RL + G T +G HI +Q+ AK+ + LP+ +P ++ DD Sbjct: 166 HAGEIERLSKCARPDVGIITCIGMSHIGNLGSQENICKAKLEICAG-LPEGAPLVLNGDD 224 Query: 251 AYSKEVMKRAH 261 + ++ + H Sbjct: 225 PFLRKAVLPDH 235 >gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces himastatinicus ATCC 53653] Length = 475 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 27/229 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A+ G DGH + A+ GA A++ + S D + P LVV Sbjct: 34 DSREVRPGSLFAALPGEHVDGHDYARGAVEAGAVAVLATRPVSTPD------APVPALVV 87 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + A + + ++A+TG++GK+S + Q+ QR G + + G S Sbjct: 88 PDVVAAMGAIARAVVERLGTTVVALTGSAGKTSTKDLIAQLLQRHGPTVWTHG------S 141 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR--LDGIKLIAGSFTNL 212 F +N + P L+ L + T H+ +E + G R D G N+ Sbjct: 142 F--NNEIGLP--------LTALRADTTTQHLVLEMGARGKGHIRYLTDLTPPRIGLVLNV 191 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 G HI ++ AK L E L E A++ ADD + + R Sbjct: 192 GTAHIGEFGGREQIAEAKGELVEALPSAEDGGVAVLNADDPLVRAMASR 240 >gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum DJO10A] gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum NCC2705] gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum DJO10A] gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis 157F] gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName: Full=UDP-MurNAc-tripeptide synthetase gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705] gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum DJO10A] gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum subsp. longum F8] gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis 157F] Length = 517 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 64/468 (13%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290 +++ ++ AD ++ + + A AG V + V + Sbjct: 239 -RQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297 Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345 + + D D+ + G+F NA A + A+G+ D A L +E + + GR Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIA-GR 356 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416 Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453 + A + +A+ +D D E I +I + G+I +R+ AI AI Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPI-IDICMEMQGYITNKDVVSTVISDRLTAITNAI 471 Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHRKHVPFDGDDHVVERMFGL 517 >gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia hofstadii F0254] Length = 464 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 74/406 (18%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F N++ I ++ IN +S +S+ + IFVAI G G+ F+ +A+ +GA A Sbjct: 7 FQSFFNKVEISDLE-----INNISINSKELGKNDIFVAIRG----GNNFVNEALEKGAFA 57 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 + S + + A V+++ +FL FA ++ +TG++GK++V Sbjct: 58 VYDSKTLKIDEKYAN-----RAFFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVK 112 Query: 131 SFVQQICQR-------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 + + + G + IG T+ +D++ I L +S G Sbjct: 113 DMIYHLLSQKYKGKKTEGNYNNHIGLPFTLLRAEEDDKF-----IILEMGMS-----GFG 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ES 242 + + L Q L I +I TN+G H+++ +T++ F AK E++P ++ Sbjct: 163 EIDL------LGQIALPDINVI----TNIGESHLEFLKTKENVFLAKT----EIIPYIKN 208 Query: 243 PAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300 +I DD Y K V +A N + L++G ++ + V + G DF Sbjct: 209 TLVINGDDDYLKNV--KAENIEVVKALNLGSN----EFREKTSDFYYGDVHFNESGTDFF 262 Query: 301 --------------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 ++ + GE V N ++A + G++ ++ E ++ + + RF Sbjct: 263 LKYFGKICQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIISEAVKNIGLTGMRF 322 Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI-IVVFG 389 + + G Y++ A+ ++ S+E L+ I + R+ I+V G Sbjct: 323 QII---ENGDTTYINDAYNASPMSMEKSLETFSQIYNDRLKIMVLG 365 >gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter denitrificans OCh 114] Length = 476 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 51/359 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW VS D+R +QAG +FVA+ + DGH F+ QA+ +GA A +VS Sbjct: 20 QW---NATGVSIDTRTLQAGDLFVALT-DVRDGHDFVKQALDKGAAAALVSH------VP 69 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + + P+L+V++ + L + ++AVTG+ GK+S + + G + Sbjct: 70 PGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLLAMLSDQGRA 129 Query: 144 SFQI-------GPTSTISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G T++ +D + ++ L+ HV++ Sbjct: 130 HASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVAL-------- 181 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 T + H++ K +FE ++P AI+ AD S Sbjct: 182 -------------ITTVAAAHLEAFDDITGIAVEKASIFEGVVPN-GVAILNADVDTSAI 227 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVY 313 +M +A + R ++ G G L + A + E + L+ + PG Sbjct: 228 LMAKAQDCRLRDITFGEHGYDFKLMR--ADLQGDTTVVRAEMGEVPILYKINSPGRHFAM 285 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A + A+ D AL L L GR+ + RIY+D T +++I Sbjct: 286 NALGAIAVMAALRTDVALALGSL-------GRWTPYKGRGQRERIYLDSVDTRLFVDLI 337 >gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ralstonia eutropha JMP134] Length = 466 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 32/372 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G +FVA+ G + D H FI +A+GA A++VS +D A + P Sbjct: 32 VHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVS-----RDVDAGV----PA 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V +TR L + + +AVTG++GK++V + I + +G Sbjct: 83 IVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VGEDQR 136 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + +A L+ G+ H G+ Q + Sbjct: 137 LATGGNLNNDIGLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTV-------AVV 189 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE--VMKRAHNAGCRV 267 TN R+H ++ + LP + A+ D+ + + RA RV Sbjct: 190 TNAQREHQEF-MVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAAGTRRV 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G G+ V + Q + + G F+ L G V NAL A +A G+ Sbjct: 249 LSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALAATACALAAGV 308 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 + + L V GR + ++ GG + +D + +N S+ + + + R++ Sbjct: 309 QVPAIQQGLAAFKAVKGRLQV--KHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAPRLL 366 Query: 386 VVFGCGGDRDQG 397 V+ G DQG Sbjct: 367 VIGDMGEVGDQG 378 >gi|297521715|ref|ZP_06940101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Escherichia coli OP50] Length = 91 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 10/94 (10%) Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRTAIEMLNKQDVL 462 AD+A+VTDDNPR+E+P I +I+ G+ ++ G+ R EA+ A+ + DV+ Sbjct: 1 FADVAVVTDDNPRTEEPRAIINDILAGM---LDAGHAKVMEGRAEAVTCAVMQAKENDVV 57 Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 +VAGKGHE IV N S + R +LG+I Sbjct: 58 LVAGKGHEDYQIVGNQRLDYSDRVTVAR-LLGVI 90 >gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis EO147] Length = 468 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 30/372 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + + + +T Sbjct: 81 LKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADAR---LAT 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +F +N + P + A L+ G+ H + L + + L+ Sbjct: 138 AGNF--NNDIGLPLTLLRLTAAHRLAVVELGMNH---PGETETLARIAAPTVALV----N 188 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 189 NAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAS--IWRVAATGNRIVDF 245 Query: 271 GYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G V + + ++ I D GE NAL + +A G+ Sbjct: 246 ALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAALAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 A + + LE V GR + S G +D + +N S+ + + ++ R++ Sbjct: 306 AAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VVFGCGGDRDQG 397 V+ G D+G Sbjct: 366 VIGEMGEVGDEG 377 >gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter cloacae SCF1] Length = 452 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 129/317 (40%), Gaps = 23/317 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V++D+R + AG +FVA+ G + D H F+ QA GA A++VS + + Sbjct: 24 VDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGAGALLVSRKLA---------CS 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TR A+ + + P ++A+TG+SGK+SV I + G + + G Sbjct: 75 LPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGQCGKTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P + L + + A+ G + + A Sbjct: 135 L--------NNDIGVPMTL-----LRLTREHEFAVIELGANHQGEIAWTVSLTRPEAALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F L P++ AI+ AD+ + S Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTGL-PQDGIAILNADNNDWLNWQSVIGDRQVWRFS 240 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + T+ D L PLPG + NAL AA L +A+G Sbjct: 241 PNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMAVGAGL 300 Query: 330 ALVLEHLEKLHVVPGRF 346 V L KL VPGR Sbjct: 301 DAVKAGLAKLQAVPGRL 317 >gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 464 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/359 (22%), Positives = 136/359 (37%), Gaps = 59/359 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R +Q +FVA+ + DGH F+ QA+ +GA A +V+ + ++ P+ Sbjct: 26 VSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALVTH------IPDDVAADAPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI----- 147 L+VD+ + L + ++ VTG+ GK+S + I G + + Sbjct: 79 LIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASYNN 138 Query: 148 --GPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G T++ +D + P I + L+ Q HV++ Sbjct: 139 HWGVPLTLARMPRDTEYAVIEIGMNHPGEI------APLARQARPHVAL----------- 181 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 T + H++ ++ + K +FE L AI+ AD ++ + Sbjct: 182 ----------VTTVAAVHLEAFESVAGIAHEKAAIFEG-LEAGGTAIVNADLDHTDILRT 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A G ++ G L V VT G+ F G N L A Sbjct: 231 CAARHGAVIVDFGRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGA 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRI-YVDYAHTSNSLEM 371 C+A+G+D + L K V GR G R GG+I +D ++ +N M Sbjct: 291 LAACVALGVDLDAAIAGLAKWAPVTGR----GVRERLALPDGGQIELLDDSYNANPTSM 345 >gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock4-18] Length = 458 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVKKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V +S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329 >gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Cupriavidus metallidurans CH34] Length = 466 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 162/378 (42%), Gaps = 40/378 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +DSR ++ G +FVA+ G + D H F+ +A+GA A++VS + + Sbjct: 30 SRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRKVDV---------DV 80 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L+V +TR L A+ +AVTG++GK++V + I + +G Sbjct: 81 PALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTTVKEMIAAIFAAA------VGEG 134 Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +++ +N + P + +A L+ G+ H G+ Q + Sbjct: 135 DRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGETIYLAGIAQPTV-------A 187 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263 TN R+H ++ + +A + LP + A+ D AY+ + ++A A Sbjct: 188 VVTNAQREHQEFMVSVEAVAHEHASAIAA-LPADGVAVFPVDAESGGAYAA-IWRQA--A 243 Query: 264 GCR-VLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R VLS G ++ ++ N QV ++ + F + G V NAL A Sbjct: 244 GTRKVLSFGTDAS-ADVRATVSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNALAATAC 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +A G+D A + + V GR + ++ G + +D + +N S+ + + Sbjct: 303 ALAAGVDVAAIQAGIAGFTAVKGRLQV--KHTPAGTVVIDDTYNANPDSMRAAIDVLAGF 360 Query: 380 TSGRIIVVFGCGGDRDQG 397 + R++V+ G DQG Sbjct: 361 ATPRLLVLGDMGEVGDQG 378 >gi|300857309|ref|YP_003782293.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM 13528] gi|300437424|gb|ADK17191.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM 13528] Length = 457 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 109/282 (38%), Gaps = 37/282 (13%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIY 169 H N+ AV GT GK++ S + I ++ L PT + + N SP + Sbjct: 109 HKYNV-AVAGTHGKTTTTSMLSCITLKADLD-----PTILVGGNLDNINGNVRIGNSPYF 162 Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 + +A Y S S+ G N+ DH+DY++ NA Sbjct: 163 ITEACEYKGSFLKFFPSI-------------------GVILNIDADHLDYYKDIDDIQNA 203 Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 ++ F L+P++ + DDA K V+ N C VL+ G I K +C K Sbjct: 204 FIK-FANLIPEKGYLVGCVDDARMKNVIS---NVNCNVLTYGINAGDITAKNIC-FDEKS 258 Query: 290 QVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + D +PG+ + NAL + + + + I + + LE RF Sbjct: 259 CASFDIYKNDVKISSLHLNVPGKHNILNALASTAVSLILDISTDNIKMGLENFKGTHRRF 318 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 E G +G + DYAH ++ L RII VF Sbjct: 319 ELKG-KKQGITVIDDYAHHPTEIKATLNAAINYPHKRIICVF 359 >gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas testosteroni CNB-2] gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas testosteroni CNB-2] Length = 634 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 139/357 (38%), Gaps = 69/357 (19%) Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153 L LFA L G + +L +TGT+GK++V S Q+ + GLS + IGP+ Sbjct: 232 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLD 291 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + A+ + T P L E SS LD R G + A + N+ Sbjct: 292 TLSARIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 332 Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIY------------------ADDA 251 +DH+D+H QAY +AK +F E +L +E P ++ A + Sbjct: 333 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPSKRGKTFQRAHVS 392 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP---- 307 + ++ +R + G V++ + + H + + D + +P Sbjct: 393 FGGDMPRRPGDFGLEVVN--------GMTWLVRAHEADETSKGKNADDLHIVRLMPADAL 444 Query: 308 ---GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYA 363 G NAL A L G A +L L + P R + VG R G + Y D + Sbjct: 445 RIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDS 501 Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420 +N + + RI+V+ G G + Q P+ ++ + ++ D P Sbjct: 502 KGTNVGATVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAP 557 >gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodospirillum centenum SW] Length = 492 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 35/303 (11%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 P W VS DSR ++ G +FVA+ G DGH ++ A+A GA A +VS Sbjct: 30 PGHW---MATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDALAHGAAAALVSR------ 80 Query: 82 FSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 + P+L+VD+T L +RL + ++AVTG+ GK+ + ++C Sbjct: 81 LPGNVPPEAPVLLVDDTLAALEDLGRVARLNAR--GKVIAVTGSVGKTGTKEAL-KLCLD 137 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + GPT FA L P+ LA+ + GV + + + Sbjct: 138 A------RGPT-----FATQGSLNNHWGVPLSLAR-FPADAHYGVFELGMNHAGEIGPLS 185 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ ++ T + H+++ + + +AK +FE + P + AI+ D+ + ++ Sbjct: 186 RM--VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGT-AILNRDNPHFARLV 242 Query: 258 KRAHNAG-CRVLSVGYQ-GKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYN 314 A G R+ S G Q G HL + C++H VT S+ G+ + LPG V N Sbjct: 243 AAARTQGLTRIWSFGTQEGADAHLLE-CSLHATSSAVTASIRGERIQYCLSLPGRHHVLN 301 Query: 315 ALV 317 +L Sbjct: 302 SLA 304 >gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101] Length = 456 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 49/349 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +DSR +Q G +FV +VG + DGH F+ QA A G +A VV + + Sbjct: 27 VGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGR-----AGDVPPG 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VD+T A + ++AVTG++GK++ + R+ L +GP Sbjct: 82 LLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELI-----RAALGP--LGP 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIA- 206 SS ++N + P+ L KA G H V VE GL + +D + A Sbjct: 135 VMA-SSGNENNDIGV--PLTLLKA-------GTEHRAVVVEMGMRGLGE--IDRLSRTAQ 182 Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G HI +++A AK + +L P + +I A D ++ ++ + Sbjct: 183 PDVAVITNIGTAHIGRLGSREAIATAKCEITSQLKP-DGLLVIPAGDPLLEQAIQAVWSG 241 Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV V G + + ++ +SV G+ PL G N L+A + Sbjct: 242 --RVQRVALAGDPGVDQADLLGELDETNDLLSVRGERIR--LPLAGRHNARNLLLAVAVA 297 Query: 323 IAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHTSN 367 +G+ L L L V VPG G N R GG +D + ++ Sbjct: 298 QELGVG----LPALADLDVEVPG-----GRNRRLQLGGLRVLDETYNAS 337 >gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aeromonas veronii B565] Length = 451 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 47/371 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+D+R + AG +FVA+ G + D H F QA+ GA A++V L Sbjct: 23 EITVVSTDTRTLGAGALFVALRGERFDAHDFCEQAVQAGASALLVERELPLA-------- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV ++ K L + + +LA+TG+ GK++V I + G Sbjct: 75 -IPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTTVKEMATAILRNEGEV----- 128 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--GVTHVSVEASSHGLDQHRLDGIKLIA 206 +T +F +N + P + + + G H A + L K A Sbjct: 129 -LATAGNF--NNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSL-------AKPDA 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N+ H++ + + F+AK +FE L + AI+ AD+ + + +R Sbjct: 179 AIINNVAAAHLEGFGSLEGVFHAKSEIFEG-LSEGGTAIVNADNEFWPKWRERGIQC--- 234 Query: 267 VLSVGYQGKFIHLKKV------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 S+ Q + H + + CA + V ++ +G + +PG V NAL AA Sbjct: 235 AFSIEGQSQPFHARNLVLNERGCA----EFVMVTPQG-ELSLTLAIPGRHNVANALAAAA 289 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 C+A+G V LE++ V GRF GG VD + + S+E +L I +T Sbjct: 290 GCLALGASLGSVKAGLEQMAPVKGRF---CVQRWGGLTLVDDTYNA-SVESVLAGIDALT 345 Query: 381 S--GRIIVVFG 389 + G ++VFG Sbjct: 346 AMGGFKVLVFG 356 >gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae MZO-3] gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 623-39] Length = 453 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 17/143 (11%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQR---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G + Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLY 130 Query: 146 QIG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 131 TQGNFNNDIGVPLTLLRSTAEDD 153 >gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052] gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052] Length = 880 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 43/388 (11%) Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 LY + P+NI +++TGT+GK++ + + ++ G + +G TST + + + Sbjct: 470 LYDEEPKNIPVISITGTNGKTTTTRLISHVLRKMGSN---VGMTSTDGVYLNEKCIHKGD 526 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY---HQTQ 223 A S L ++ V +E + GL + L TN+ DH+ + + Sbjct: 527 DSGFNSARSILMNKDVDVAVLETARGGLVKRGLAYELADVAIITNITNDHLGLDGINSIE 586 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVG 271 + F L E + + ++ ADD YSK V+ R ++ G Sbjct: 587 ELSFTKA--LVGEAVKDDGFVVVNADDKYSKTVINRFSAEKIYFAKDKENPLIQENIANG 644 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 F+ K+C I+NK++ I V ++ + E+ + NA+ A + + +D + Sbjct: 645 KIAVFVEDDKICVINNKKKYEI-VSTRELPISYNGTLEYNIENAMAACAGLVGLEVDYCM 703 Query: 332 V----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIV 386 + ++ K GRF +R R+ +DYAH I+ ++R I +I Sbjct: 704 ISKGFMDFGLKNEDNSGRFNMYNYLNR--RVILDYAHNIEGYRAIISSLRKIKGDNDLIG 761 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR- 445 V G GDR +G+I + D ++ +D + + EI + I K N+ Sbjct: 762 VIGIPGDRKDDIGYAIGEICANNFDKIVIKEDKDKR---GRKSGEIADILEKSILKTNKN 818 Query: 446 ---------IEAIRTAIEMLNKQDVLVV 464 ++A++ AI++ NK D++VV Sbjct: 819 ANLKICLDEVQALKYAIDISNKGDIIVV 846 >gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus BDRD-ST196] Length = 458 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 76 NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L ++ +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K + F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM 16992] gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM 16992] Length = 517 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 98/445 (22%), Positives = 186/445 (41%), Gaps = 38/445 (8%) Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQI 136 DFSA ++ P L+V++ RK +SL ++ YG +P+N L V G +G A Q + Sbjct: 83 NDFSAATKA--PGLIVNDARKAMSLLSAAFYG-YPQNQLKVIGITGTKGKTTTAYLTQAM 139 Query: 137 ---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 C + F ++ LTTP + + + + G+ ++ +E SS Sbjct: 140 LNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQA 199 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 R+ G+ +F N+ DHI H T + YF+ K ++ + ++ A Sbjct: 200 YKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNC----RSLVLGTACA 255 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309 ++ + + A A V + + + + + I+VEG+ L L G+ Sbjct: 256 HADLIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGD 315 Query: 310 FQVYNALVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 F NA A + A+G D + L ++E + + GR E VDYAH Sbjct: 316 FNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIA-GRMEHFHDTKSNTIAIVDYAH 374 Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 S+ +L + + +V G G++ +R + + A + + I+T ++ Sbjct: 375 NYASVTALLDYVDQRYGKDDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTD 434 Query: 422 SEDPEKIRAEIIHGI--PGFIEK--GNRIEAIRTAIEM----LNKQDVLVVAGKGHETVH 473 E E + ++ + P + +R EA+ + + + N+ ++++ GKG+E Sbjct: 435 DEPVEHVCQNMLDSVTNPDLDARIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNE--R 492 Query: 474 IVTNGEKKMSVDCD--IIREILGLI 496 N K + + D I+ I GL+ Sbjct: 493 WFKNHGKHIPFEGDDHIVERIFGLV 517 >gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum acetoxidans DSM 771] gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 13/230 (5%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266 TN+ DH+DY++T++ A + ++ P + A++ DD K + +KR C+ Sbjct: 179 TNIENDHLDYYKTEEKITEAFSKFIRKI-PSDGMAVLCTDDRQLKHMSTQLKRP----CK 233 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAI 325 SV ++ + K +V + G L +PG + NAL + I Sbjct: 234 TYSVKSTDADYTIRNMITDGPKSKVEVYENGTLLGILELLVPGLHNISNALAVVAVGRHI 293 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+D + E L RF+ +G ++ DYAH + + LK R +GRII Sbjct: 294 GLDFDKIAEALSTFKGAQRRFQLIGIEKEV-QVVDDYAHHPSEIRATLKAARQAHAGRII 352 Query: 386 VVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433 VF R Q G+ A AD+ IV+D E P E + A +I Sbjct: 353 AVFQPHRYSRTQHLYEQFGE-AFGDADVVIVSDIYSAGEKPIEGVHAGLI 401 >gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae V52] gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O395] gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC27] Length = 453 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKG 126 >gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310] gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310] Length = 824 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 31/363 (8%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +I + +DSR + +F A+V ++ +GH +IP+ +G VVS+ D + Sbjct: 23 QIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGVRNFVVSAVPVGYD---KL 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 L V +TRK L A R + I+ +TG++GK+ V ++ Q L S Q Sbjct: 80 YPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTMVKEWLYQ------LLSPQ 133 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + S+ ++++ P ++L ++ + GV + S G D I+ Sbjct: 134 FYVTRSPRSY--NSQIGVPLSVWL---MNEQTQVGVFEAGI--SKPGEMNALRDIIQPTI 186 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHNAG 264 TNLG D HQ K R E+L L ++ +IY ADD +V+ G Sbjct: 187 AVLTNLG----DAHQENFGLIEDKCR--EKLILFHDAETLIYPADDEIISKVITEYDYPG 240 Query: 265 CRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R+ S+ + +K V VT +GK+ + P E V N++V A + + Sbjct: 241 ERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFIDEASVVNSIVCAIVSL 300 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRTIT 380 +G+ ++ + +++L V R E V G + D Y NSL++ L N R Sbjct: 301 HLGVTPDVLDQRMQQLEPVAMRLE-VKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDH 359 Query: 381 SGR 383 GR Sbjct: 360 QGR 362 >gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium intracellulare ATCC 13950] Length = 492 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 84/198 (42%), Gaps = 21/198 (10%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + AY + + L P + ++ DD + + +R G RVL Sbjct: 189 TNIETDHLDFYGSAGAYVDVFDAFVDRLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247 Query: 270 VGYQGKFIHLKKVCA--IHNKQQVTISVE----GKDFD-------FLFPLPGEFQVYNAL 316 G G + + + A + +QQ T +V D D +PG NA+ Sbjct: 248 YG-SGASLPGEPLAATLLSWQQQGTEAVAQIQLAPDLDPEQRPRVMRLSVPGRHMALNAM 306 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILK 374 A + IG VL+ L V RFE VGT G R++ DYAH + L Sbjct: 307 GALLAALEIGAPVDAVLDGLAGFEGVRRRFELVGTAGNGQPVRVFDDYAHHPTEIVATLA 366 Query: 375 NIRTITS----GRIIVVF 388 +RT+ GR I VF Sbjct: 367 AVRTLLEQSGDGRSIAVF 384 >gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN] gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN] gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii JV-V16] Length = 455 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 41/301 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V+ DSR I +FV + G + DGH FI AIA GA A + + + N Sbjct: 24 ISSVAFDSRKINENALFVPLKGER-DGHDFINSAIANGAVATLWEKGHPNK------PDN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ VD+T + A K ++ +TG++GK++ V + + F + Sbjct: 77 FPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDG-IKL 204 T ++F +N + P ++ L + T + V G+D+ H L +K Sbjct: 133 TQ--ANF--NNEIGVP--------MTILEMKPTTEILV--LEMGMDRAGQLHHLSSLVKP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T +G HI++ ++ +AKM + + L KE IY D + +RA Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFL--KEDGEFIYNGD--EPLLRQRAEKIS 234 Query: 265 CRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G+ Q L+ +H+ VT S E K F P+ G+ V NA+ A +C Sbjct: 235 QAKSTFGFNDQDTIYALEFKSYMHHASFVTSSSEQK---FSIPMIGKHNVSNAM--AAIC 289 Query: 323 I 323 + Sbjct: 290 V 290 >gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter alkaliphilus AHT 1] Length = 461 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 38/334 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++KI VS DSR I G FV + G DGH FI A + + ++ + T Sbjct: 21 DKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEK-----GAAGCFAAFSKNVTH 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ V++ + L ++ K ++AVTG+ GK++ + + S + Sbjct: 76 PEGMTVISVEDPEQALQDLSAFYRRKFQLPVVAVTGSVGKTTTKDMI------AAALSPE 129 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + T + +N L P L+ L S + EA+ + I L+A Sbjct: 130 LKTLKTEGNL--NNHLGVP------LMLTRLDS------TYEAAVLEMGMSGYGEIDLLA 175 Query: 207 -------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 TN+G H++ +++ AK L L + A++ AD+ ++ Sbjct: 176 KLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHL-AADGVAVVNADEPL---LVPH 231 Query: 260 AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALV 317 GCRV++ G+ + + + ++ I EG + + PLPG +YN + Sbjct: 232 IKGLGCRVITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRHNIYNLMA 291 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 A + +G+D +++ E ++ + R E V T Sbjct: 292 ALAVGRLLGVDDSVLTEGFSRVRLSGMRLETVTT 325 >gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii DSM 2075] Length = 466 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 43/345 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I G +FVA+ G DGH F+ +A+ GA A +V ++ + + Sbjct: 29 VCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALVERGFN------PTAAGQCL 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QR------SGLSSF 145 L VD+T K L A+ P I+AVTG++GK+S + Q+ QR G + Sbjct: 83 LRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQRFEVHKTKGNLNN 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 IG T+ + ++++ A ++YL++ V+V Sbjct: 143 HIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAV----------------- 185 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H+ + +A AK LF+ L P E+ A + DD + A Sbjct: 186 ----ITNVGPAHLGPLGSIEAVAAAKAELFQALGP-EAVAAVNLDDPL---LAPWADKLP 237 Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLC 322 CRV++ G K + V A ++Q T+ + + + + PG V NAL AA + Sbjct: 238 CRVITFGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVG 297 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +G+++ + + +E GR E V T +GG + +D + +N Sbjct: 298 AGLGLEAWQIKDGVEAFTPTKGRLENVFT--KGGPLLIDDTYNAN 340 >gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1056] Length = 456 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 90/406 (22%), Positives = 161/406 (39%), Gaps = 55/406 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I+ +FV + G + DGH FIP A AQGA A + S Sbjct: 20 QFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------S 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 + ++VD+ A K ++LAVTG++GK++ + Q+ S Sbjct: 69 ERPVAEGAYILVDDVLMAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKT 128 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L K+ I+ AD + Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----K 221 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 ++ A C+++ G I L ++ N + + D P+ G++ NA Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKYNATNA 278 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 ++AA + G+ + + +L + R E+ + G I D Y ++ +IL+ Sbjct: 279 MIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILE 337 Query: 375 NIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 TI + GR + V + + + G + L + IVTD Sbjct: 338 TFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae 2740-80] gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae NCTC 8457] gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae B33] gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio cholerae M66-2] gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae RC9] gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae B33] gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae BX 330286] gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae MJ-1236] gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio cholerae MO10] gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholera CIRS 101] gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio cholerae INDRE 91/1] gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 453 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +R ++ VS+DSR I A +FVA+VG + D H F QA+ GA A++V Sbjct: 20 EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVER---------E 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + LVV +T++ L S ++ + +A+TG+ GK++V V I + G Sbjct: 71 LDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKG 126 >gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya novella DSM 506] Length = 479 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 154/374 (41%), Gaps = 35/374 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R I VS D+R +Q G +F AI G+ DGH ++ A +GA VV +D T+ Sbjct: 27 RAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAADRGAALSVVE-----RDRVGTLP 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L VD+ L G+ I+ VTG+ GK++ + L+ Sbjct: 82 EGAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTTKEALL-------LALGAD 134 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205 GPT S+ + +N P+ LA+ + S+ GV + + +H + L +K++ Sbjct: 135 GPTHA-SAASYNNHWGV--PLSLAR-MPASSAYGVFELGM---NHAGEIEPL--VKMVRP 185 Query: 206 -AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T + HI +A +AK +F + P + A++ D+ + + + A AG Sbjct: 186 HVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGA-AVLNRDNPHFERLAAAARAAG 244 Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGL 321 + + VG+ + + VC Q T + + G+ F LPG V NAL Sbjct: 245 IQNI-VGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVLAA 303 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEM-----ILKN 375 +G D L L L PGR +GG +D ++ +N M +L Sbjct: 304 ARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVLGT 363 Query: 376 IRTITSGRIIVVFG 389 GR + V G Sbjct: 364 APVEGRGRRLAVLG 377 >gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E] gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E] Length = 461 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R +F A+ G K DGH ++ +A+AQG A+VV + + Sbjct: 25 IESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVAQGCTAVVVDHPCEI---------D 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVV +TR L A+ L + +A+TG+ GK++V I QR+ Sbjct: 76 VPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCGKTTVKEMTAAILQRTA 127 >gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403] gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis CV56] Length = 440 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 62/381 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +N++ DSR I+ G IF+ + G + DGH FI A GA ++S FS Sbjct: 20 QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 +LV DN F L A K ++AVTG++GK++ + + + Sbjct: 69 EKEVEQAHLLVDDNLLAFQKL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKT 127 Query: 141 ----GLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + +IG TI D +L + + +LS ++V Sbjct: 128 YKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAV-------- 179 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDA 251 T +G H+++ +++ KM L EL+ P I +A Sbjct: 180 -------------ITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPII----NA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + +++ G G+ + + K+ + +K+++T D P+PG++ Sbjct: 223 FIPD--------NQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDESITIPVPGKYN 272 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA++AA + + G+ A + + L+++ + R E+ + + Y ++ + Sbjct: 273 ATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRL 332 Query: 372 ILKNIRTI---TSGRIIVVFG 389 IL+ + I +GR I V Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353 >gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK150] Length = 456 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 92/411 (22%), Positives = 161/411 (39%), Gaps = 65/411 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I+ G +FV + G + DGH FI A QGA A V AY Sbjct: 20 QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATLSERPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 139 RS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 S G + +IG T+ +D + G H+ Sbjct: 124 TSYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLR-KDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 +++ A C+++ G I L ++ N + + D P+ G++ Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRLEERKNSLSFECNFLEQRIDL--PVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + G+ A + + +L + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGVSEAAIAQAFSELKLTRNRTEWKKAGN-GADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +IL+ TI + GR + V + + + G + L + IVTD Sbjct: 333 RLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1] gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1] Length = 468 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 79/335 (23%), Positives = 140/335 (41%), Gaps = 55/335 (16%) Query: 66 QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA+ +VVSSA + ++ I SN P++ + LSL + P+ +A+TG Sbjct: 63 EGADIVVVSSAIPKANPEYIRAIESNIPVI---HRADMLSLLMT------PKKGIAITGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ S + I +++G PT I D L K YL ++ Sbjct: 114 HGKTTTTSMISLIMEKNGFD-----PTVIIGGELND----IGGNATLGKG-EYLVAEAD- 162 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + S L H I +I TN+ DH+DY++ + A + F + + K+ Sbjct: 163 --ESDGSFMKLHPH----IAVI----TNIENDHMDYYKNMNSMKKA-FKKFIDNVNKDGF 211 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 I D+ + +E++K N + + Y F+ + V ++ FD Sbjct: 212 IIFGNDNKHVQELVKET-NKEYYTVGINYPSDFM----------AKNVKMNGLITHFDVC 260 Query: 304 FP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 F +PG + NA A + IGID ++E ++ V RF+ + ++ Sbjct: 261 FREKLLGKVELHVPGLHNILNATTAIAVGNRIGIDMEGMIEAIKTFRGVQRRFQII-SDI 319 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RG ++ DYAH ++ L+ R +I +F Sbjct: 320 RGIKVIDDYAHHPTEIKATLRAARNCNPKKIYAIF 354 >gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-28] Length = 458 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V +S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329 >gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120] Length = 451 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 44/324 (13%) Query: 13 ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +LI L P+ E + +VSS D+R I+ G +F+A G K DGH FI AIA+GA Sbjct: 9 QLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIARGA 68 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A +V Y P+L V NT + + ++ VTG+ GK++ Sbjct: 69 IAAIVDDDYE--------NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G + + ++ N + I + K L L+++ + +E Sbjct: 121 TKELIAAVLGTKG---------NVLKTYGNYN-----NEIGVPKTLLELNAEH-DYAVIE 165 Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + G Q + + IA G TN+G HI+ +++A AK L E +PK+S A Sbjct: 166 MAMRGRGQ--IAELAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D+ + + VL+ G G + V + V G Sbjct: 223 ILNHDNPLLMATAAKFWSG--EVLTYGLSGGDVQGSLV------DNAIVEVAG--LRLPL 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328 PLPG N L A + +GI+ Sbjct: 273 PLPGRHNATNYLAALAVAKVLGIE 296 >gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp. RC341] Length = 453 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 17/142 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R I+ VS+DSR I A +FVA+VG + D H F QA+ GA A++V + Sbjct: 21 DRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEH---------EL 71 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ LVV +T++ L + ++ + +A+TG+ GK++V V I + G + Sbjct: 72 DADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131 Query: 147 IG--------PTSTISSFAQDN 160 G P + + S A+D+ Sbjct: 132 QGNFNNDIGVPLTLLRSTAEDD 153 >gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH621] Length = 458 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 76 NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L ++ +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K + F P+ G+ VYN L Sbjct: 240 AAETVTFGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T+S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. lactis KF147] Length = 440 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 62/381 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +N++ DSR I+ G IF+ + G + DGH FI A GA ++S FS Sbjct: 20 QLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDNGA---IIS-------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 +LV DN F L A K ++AVTG++GK++ + + + Sbjct: 69 EKEVEQAHLLVDDNLLAFQKL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKFKT 127 Query: 141 ----GLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + +IG TI D +L + + +LS ++V Sbjct: 128 YKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAKPELAV-------- 179 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDA 251 T +G H+++ +++ KM L EL+ P I +A Sbjct: 180 -------------ITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPII----NA 222 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + +++ G G+ + + K+ + +K+++T D P+PG++ Sbjct: 223 FIPD--------NQKIIRFGLPGEDLFITKL--VEHKEKLTFETNFLDESITIPVPGKYN 272 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NA++AA + + G+ A + + L+++ + R E+ + + Y ++ + Sbjct: 273 ATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLLSDVYNANPTAMRL 332 Query: 372 ILKNIRTI---TSGRIIVVFG 389 IL+ + I +GR I V Sbjct: 333 ILETFQAIPKNENGRKIAVLA 353 >gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R] gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R] Length = 514 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 39/376 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80 + V DSR + G +F+A+ G + DGH F AI +GA A+ +V +Q Sbjct: 29 SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +A I ++ P VV+ + H N++A+TG++GK+S F+ + Sbjct: 89 ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + G + T YL ++ +S++G+ H+ + Sbjct: 149 LGQDGPTVAPPGSFNNELGLPHTALRCTTDTKYL---VAEMSARGIGHI----------K 195 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSK 254 H + + N+G H+ +++ AK + E L K++ A++ ADD + Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPF-- 253 Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--G 308 V + A RV+ G K + ++ + + ++ KD + L G Sbjct: 254 -VARMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVARASFTLNTKDGSWPVALQVFG 312 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 E QV NAL AA + + G+ LV+ LE V T + G I D Y + Sbjct: 313 EHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPD 372 Query: 368 SLEMILKNIRTITSGR 383 S+ + + SGR Sbjct: 373 SMRAGIAALAYTASGR 388 >gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74] Length = 469 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 18/226 (7%) Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHN-AGCRVLSVG 271 H +Y ++ Y + FE + K P +I AD ++E+ +R A +++ G Sbjct: 191 HANYASIEEIYES-----FETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYG 245 Query: 272 -YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + + ++KV +VT++++GK F +PG +NA+ A +++G+ Sbjct: 246 SAEDADVRVRKVSPRGLTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLH 305 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390 + L V R + G + G ++ YAH + L+ +R GRI+VVF Sbjct: 306 NLASALRSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQP 364 Query: 391 ---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432 ++ GK MG+ AL LAD ++V D P EDP E + +E+ Sbjct: 365 HLFSRTQELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407 >gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus TK-6] Length = 452 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 115/297 (38%), Gaps = 75/297 (25%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKA 173 +AV G+ GK++ S + + +G PT I F + RL I Sbjct: 109 IAVCGSHGKTTTTSMIAHMVHEAGYD-----PTVIIGGVLQKFGSNARLGKDQLI----- 158 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 +S S G L + +I TN+ R+H+ Y++ +A +R Sbjct: 159 -----------ISEADESDGSFLKLLPTVAVI----TNIDREHLGYYKDLDEIKSAFLR- 202 Query: 234 FEELLPKESPAIIYADDAYSKEVMK-------------RAH--------NAGCRVLSVGY 272 F +P ++ ADD S+EVMK AH GC + Y Sbjct: 203 FANSVPFYGFCVMNADDENSREVMKSVKAPLITFGIEREAHLMARNLSLEGGCYSFDLFY 262 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 +GK + ++ +SV G+ VYNAL +C+ +GI + + Sbjct: 263 EGKPL-----------TRIHMSVAGRH-----------NVYNALAGIAVCLRMGISVSNI 300 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 + LE R EF G +G +Y DY H + ++K +R + RI++VF Sbjct: 301 KKALESFKNAERRLEFKGY-FKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVF 356 >gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria flavescens SK114] gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria flavescens SK114] Length = 445 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDVFC-HAMKRAGRE-VKWFSLEHKADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24] gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24] Length = 467 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 130/310 (41%), Gaps = 58/310 (18%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTG 122 AEA+V SA IR++ P L L A+ + G + ++ V G Sbjct: 76 AEAVVAGSA---------IRADNPELQAARAAGLPVLHRSEALAAAMAG---DRVVTVAG 123 Query: 123 TSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYL 177 T GKS+ S V + Q +GL +F IG + + S N + S I++A+A S+L Sbjct: 124 THGKSTTTSMVTVLLQGAGLDPTFAIG--ANVPSLGV-NAASGTSDIFVAEADESDGSFL 180 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + + H++V TN+ DH+DY+ T +A + F EL Sbjct: 181 NYR--PHIAV---------------------VTNVEPDHLDYYGTAEAVYE-SFDSFTEL 216 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLKKVCAIHN--KQQVTIS 294 LP + + ADD ++ + +R G RV++ G + L+ +H+ V +S Sbjct: 217 LPADGVLVACADDPGARALAERTRTRGNTRVVTYG-TAEDAQLR----LHDGGPGDVWVS 271 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 F +PG NA A + + +G+ L RFEF G R Sbjct: 272 TGAGRFALDLQVPGRHNALNAAAAFAVALELGVAPDAASGALAHFSGASRRFEFKG-EGR 330 Query: 355 GGRIYVDYAH 364 G R+Y DYAH Sbjct: 331 GVRVYDDYAH 340 >gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis str. MC2 155] gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str. MC2 155] Length = 482 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 33/198 (16%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ ++QAY A F E + ++ DD + + R G RVL Sbjct: 189 TNIEADHLDFFGSEQAY-TAVFDSFVERIAPGGALVVCTDDPGAAALADRTDALGIRVLR 247 Query: 270 VGYQGKFI----------------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G G + H++ + HN + V +SV PG Sbjct: 248 YGSTGDNLAGTLLSWEQQGTGAVAHIR-LAGEHNPRAVRLSV-----------PGRHMAL 295 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A IG + VL+ L V RFE VGT + G R++ DYAH + L Sbjct: 296 NALAALLAAREIGAPTDSVLDGLAGFEGVRRRFELVGTAA-GARVFDDYAHHPTEVRATL 354 Query: 374 KNIRTI---TSGRIIVVF 388 + RT+ GR++V F Sbjct: 355 EAARTVVDQNGGRVVVAF 372 >gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock1-3] Length = 458 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V +S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329 >gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH603] Length = 458 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 79/344 (22%), Positives = 137/344 (39%), Gaps = 49/344 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVE 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 N P++ V++T L + A + ++ VTG++GK+S V I + Sbjct: 76 NP-PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSILA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--------------EELLPKESPAIIYAD 249 A TN+G H+ +++A AK+ + E LL P + A Sbjct: 182 PNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAA 241 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + + A +V Q H K N+ + + F P+ G+ Sbjct: 242 ETVT---FGDARANDYYPTTVTLQSTGTHFK-----MNRDETS--------SFYLPVLGK 285 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 VYN L + + G+ + + L L + R E V T+S Sbjct: 286 HNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279] Length = 482 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 41/383 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R V+ DSR ++ IFVA G + DG+ F +AI GA A+V++ + + Sbjct: 23 DRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDEVVAMAR 82 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +L D+ +FL A + ++ VTG+ GK++ + + ++ Sbjct: 83 DRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSK----RYR 138 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-HRLDGI-K 203 + T+ +N + P L+ LS+ T + V E + + RL + Sbjct: 139 VHATAG----NYNNLIGLP--------LTILSAPADTQMLVLEMGMNDFGEISRLTACAQ 186 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-------ESPAIIYADDAYSKEV 256 G T +G HI +++ AK + E + P S +++ +D ++ + Sbjct: 187 PTFGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYI 246 Query: 257 MKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH------NKQQVTISVE-GKDFDFLFPLPG 308 ++R A AG V+ G VCA H + I+ E G F +PG Sbjct: 247 IERYARPAGIDVVLAGTSTD----DDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 V NAL AA + +G+ + + E L + GR V + G R+ D Y + Sbjct: 303 AQSVPNALFAAAVAHRLGVPAFEIDEAFASLEMT-GRRAQVRHAACGARVIDDSYNASPE 361 Query: 368 SLEMILKNIRTI-TSGRIIVVFG 389 S+ L + ++ SG I V G Sbjct: 362 SMAAGLDLLGSLPCSGTRIAVLG 384 >gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC7] Length = 494 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 ++ + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia spumigena CCY9414] Length = 450 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 45/341 (13%) Query: 13 ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +L+ L P+ E + +VSS D+R I+ G +F+A+ G DGH F+ AIAQGA Sbjct: 9 QLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQGA 68 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A +V S Y D + +L V +T + + ++ VTG+ GK++ Sbjct: 69 IAAIVDSDYENADVA--------VLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSVGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G T +F +N + P K L L ++ + VE Sbjct: 121 TKELIAAVLATEGRVH------KTFGNF--NNEIGVP------KTLLELDTEH-DYAVVE 165 Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + G Q R + IA G TN+G HI+ +++A AK L E +P++S A Sbjct: 166 MAMRGEGQIR--ELTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAE-MPEDSVA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D+ ++ + V++ G G I + + Q + + + Sbjct: 223 ILNHDNPLLMATAQQVWSG--EVVTYGLSGGDIQ----GVLTDNQTIKVG----EMRLPL 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 PLPG N L A + +GID + L++ K+++ GR Sbjct: 273 PLPGRHNASNFLAALAVAQVLGIDWS-TLQNGVKVNMPTGR 312 >gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC 13032] gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium glutamicum ATCC 13032] gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC 13032] Length = 514 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 39/376 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80 + V DSR + G +F+A+ G + DGH F AI +GA A+ +V +Q Sbjct: 29 SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +A I ++ P VV+ + H N++A+TG++GK+S F+ + Sbjct: 89 ESNADIYAHDPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + G + T YL ++ +S++G+ H+ + Sbjct: 149 LDQDGPTVAPPGSFNNELGLPHTALRCTTDTKYL---VAEMSARGIGHI----------K 195 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSK 254 H + + N+G H+ +++ AK + E L K++ A++ ADD + Sbjct: 196 HLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNADDPF-- 253 Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--G 308 V + A RV+ G K + ++ + + ++ KD + L G Sbjct: 254 -VARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVARASFTLNTKDGSWPVTLQVFG 312 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 E QV NAL AA + + G+ LV+ LE V T + G I D Y + Sbjct: 313 EHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMDVKTRADGVTIINDSYNANPD 372 Query: 368 SLEMILKNIRTITSGR 383 S+ + + SGR Sbjct: 373 SMRAGIAALAYTASGR 388 >gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera sp. 301] Length = 464 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 36/368 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + G +FVA+ G+ DGH F QAIAQGA A+++S D + ++ P Sbjct: 25 VGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQGAAAVLIS------DRTLNVQ---PA 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSFQIG 148 ++VD+T + L A+ K + AVTG++GK++V AS ++ C + Sbjct: 76 ILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVKEMLASILRAACDQ--------- 126 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 P + +++ N + I L L L+++ V+ +H + L I K Sbjct: 127 PDAVLATVGNLN-----NHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLSRIGKPTVA 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N G HI + +A AK +FE L ++ A+I ADD ++ + A ++ Sbjct: 182 LINNAGNAHIGELGSFEAIARAKGEIFEG-LAADATAVINADDVFAPLWLDLAGQR--KI 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 ++ G + K + + + I+ P PG V NAL A +A+G Sbjct: 239 MTFGLKNKADVTAQYQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAATSTALAMGA 298 Query: 328 DSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRII 385 V LE V GR + G N G + +D + +N + M + ++ SG I Sbjct: 299 SLQAVSIGLENYAGVKGRLQQKAGLN---GALVIDDTYNANPMSMKVAIDVLMAMSGEKI 355 Query: 386 VVFGCGGD 393 +V G G+ Sbjct: 356 LVLGDMGE 363 >gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium lipophiloflavum DSM 44291] gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium lipophiloflavum DSM 44291] Length = 483 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 14/182 (7%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+DY T + YF F + +P ++ DDA + +RA G V Sbjct: 184 ITNIEPDHLDYFGTAEKYFEV-FDSFADRIPPGGHLVVCLDDAEAAACGQRARARGVNVF 242 Query: 269 SVGYQG---KFIHLKKVCAIHNKQ----QVTISVEG--KDFDFLFPLPGEFQVYNALVAA 319 G ++ + I +V +++ G + + +PG+ V NA A Sbjct: 243 GYGTAAAASRYPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAAGAL 302 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSR--GGRIYVDYAHTSNSLEMILKN 375 C +G D + E L V RFE G T R G R+Y DYAH + +L Sbjct: 303 VACTLVGADPGKLAEGLTGFTGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAVLTA 362 Query: 376 IR 377 R Sbjct: 363 AR 364 >gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris MG1363] gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus lactis subsp. cremoris NZ9000] Length = 440 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 86/380 (22%), Positives = 155/380 (40%), Gaps = 60/380 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q + +N++ DSR I+ G IF+ + G + GH FI A GA ++S FS Sbjct: 20 QLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDNGA---IIS-------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--- 140 +LV DN F +L A K ++AVTG++GK++ + + + Sbjct: 69 EKEVEQAHLLVDDNLAAFQTL-AKYYLEKTKVPVIAVTGSNGKTTTKDMIAAVLSKKYKT 127 Query: 141 ----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG TI +D + G+ H L Q Sbjct: 128 YKTQGNHNNEIGLPYTILHMPEDTE-------------KLVLEMGMDHPGDIDFLSQLAQ 174 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----LFEELLPKESPAIIYADDAY 252 L I LI G H+++ +++ KM L EL+ P I +A+ Sbjct: 175 PELALITLI-------GEAHLEFMGSRENIAKGKMGITAGLHGELIAPADPII----NAF 223 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 E ++ G G+ + + K+ I +K+++T D P+PG++ Sbjct: 224 IPE--------NQKISRFGLPGEDLFITKL--IEHKERLTFETNFLDESITIPVPGKYNA 273 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NA++AA + + G+ A + + L+++ + R E+ + + + Y ++ +I Sbjct: 274 TNAMLAAYVGLHYGLTEAEINKALKEVELTRNRTEWKKSKNGADLLSDVYNANPTAMRLI 333 Query: 373 LKNIRTI---TSGRIIVVFG 389 L+ + I +GR I V Sbjct: 334 LETFQAIPKNENGRKIAVLA 353 >gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bilophila wadsworthia 3_1_6] Length = 472 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR ++ G +FV I G DGH F +AI GA A++VS F A Sbjct: 26 VEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEAGAAALLVSR----NPFDAV--PP 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+++V++T K L A + E ++ +TGT+GK++V + Q+ R GL++ Sbjct: 80 VPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTVKELLAQVLSRRGLTA 135 >gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium cf. prausnitzii KLE1255] Length = 460 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 25/237 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E ++ V++DSR ++ G IFVA G K DGH F +A+ GA +VV+ + Sbjct: 22 EVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHPVE------GV 75 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + IL D+ + + A+ HP+ ++ VTG+ GK++ + L+ F Sbjct: 76 PAEKAILCPDSYHAMMVMGANYRSQYHPK-MVGVTGSVGKTTTKQMTY-----AALAGF- 128 Query: 147 IGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKL 204 TI + Q+N L P + L L S V SH + RL + Sbjct: 129 ---GETIKTEGNQNNELGMP------RTLMRLESNTEYAVIEMGMSHAGEIDRLARAARP 179 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G T +G HI +Q+ AK+ + LP+ +P ++ DD + + AH Sbjct: 180 DVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDKFLRAAKLPAH 235 >gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-29] Length = 458 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 137/336 (40%), Gaps = 33/336 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WMKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 A N P++ V++T L + A + ++ VTG++GK+S V + + Sbjct: 75 ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 F++ T +F +N + P I L+ + V + + SS G + + Sbjct: 131 KFKVQKTE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLAR 181 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A TN+G H+ +++A AK+ + L +E +Y D N Sbjct: 182 PNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGL--QEGGVFVYNGDEPLLTNRVPEMNL 239 Query: 264 GCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G Y + L + H K ++ F P+ G+ VYN L Sbjct: 240 ATETVTFGDARANDYYPTTVTL-QATGTHFKMN-----REENISFYIPVLGKHNVYNTLA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V +S Sbjct: 294 SMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDS 329 >gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] Length = 853 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 53/323 (16%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++F G+ P ++AV GT+GK++ + I Q + +++G TST + ++ R+ Sbjct: 458 TMFDEGDDGRIP--VVAVAGTNGKTTTVRLIAHILQG---NKYRVGMTSTDGVYIENKRI 512 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDH--IDY 219 T A + L V +E + G+ + L + TN+G DH +++ Sbjct: 513 DTGDCSGPRSARNVLMHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNF 572 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-----------------SKEVMKRAHN 262 T + K + + + P + + AD S + H Sbjct: 573 ISTVEDLAVVKRVIVQNVAPNGTAVLNAADPMVANMAGSCPGSVTFFAQDSNHAVLATHR 632 Query: 263 A-GCRVLS------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A G RVL V +GKF H ++ I T+ FQV NA Sbjct: 633 AQGHRVLFQDGNVIVLSEGKFEHRIQLSDIPITHNGTVG---------------FQVENA 677 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + A G +G+D +VLE L PGRF + +G + DY H +++E Sbjct: 678 MAAIGAAWGLGLDWNVVLEGLRTFENSASSTPGRFNIF--SHKGATVIADYGHNPDAIEA 735 Query: 372 ILKNIRTITSGRIIVVFGCGGDR 394 + + + + + R +VV GDR Sbjct: 736 LTRAVEGMPAKRRMVVISGAGDR 758 >gi|41407994|ref|NP_960830.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp. paratuberculosis K-10] gi|48428301|sp|P61681|MURC_MYCPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|41396348|gb|AAS04213.1| MurC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 496 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TN+ DH+D++ + AY E L P + ++ DD + + +R G RVL Sbjct: 189 TNIETDHLDFYGSADAYVAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247 Query: 269 -SVGYQGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317 G G+ + + A + +QQ T I + G+ L +PG NA+ Sbjct: 248 YGSGSHGQAPSGQPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNAMG 307 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370 A I IG + VL+ L V RFE VGT GG R++ DYAH + Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGPAPSSTVRVFDDYAHHPTEIA 365 Query: 371 MILKNIRTI----TSGRIIVVF 388 L +RT+ GR I VF Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387 >gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli] gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia coli K-12] Length = 452 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A A A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGAAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPERALV 181 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 NL H++ + AK +F L P+ AI+ AD+ S Sbjct: 182 N-------NLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseibium sp. TrichSKD4] Length = 476 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 149/371 (40%), Gaps = 29/371 (7%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + I +S DSR I+ G F AI G++ DGH F+ A+A GA VV SA L +T R Sbjct: 25 QDITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGTALANGASVAVV-SADKLDSLPSTGR 83 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 L+VD+ + A + I+AVTG+ GK+ ++ RSG Sbjct: 84 ----YLIVDDPLAAMERLAVASRARSNARIVAVTGSVGKTGTKEALRLALGRSGKVH--- 136 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++++SF +N P+ LA+ + + GV + + A R+ ++ Sbjct: 137 ---ASVASF--NNHWGV--PLTLARMPADVDF-GVFEIGMSAPGEITPLVRM--VRPHVA 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAG 264 T + H+++ + + AK +F+ L P AI+ D+ +M K H Sbjct: 187 FITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPG-GVAILNRDNNQFDLLMFLAKADHVQE 245 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R Q + V V+ + G+ + G V+N+L + Sbjct: 246 IRTFGEN-QNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAVLTAVVE 304 Query: 325 IGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEM-----ILKNIRT 378 +G + AL E L + GR E V G +D ++ +N M +L Sbjct: 305 LGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSVLGEAEI 364 Query: 379 ITSGRIIVVFG 389 GR I V G Sbjct: 365 TPPGRRIAVLG 375 >gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces bingchenggensis BCW-1] Length = 480 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 28/240 (11%) Query: 27 ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +RK+ V DSR ++ G +F A+ G + DGH F +A+A GA A++ + A Sbjct: 24 DRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAARAVADGAVAVLAARPVPAAAADAP 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + S +VV + + L A + + ++A+TG++GK+S + Q+ +R G + + Sbjct: 84 VPS----IVVPDVQAALGALARAVVLRLDATVVALTGSAGKTSTKDLIAQLLRRHGPTVW 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR--LDGI 202 G + +N + P L+ +S+ T H+ +E + G R D Sbjct: 140 TPG--------SLNNEIGLP--------LTAMSADETTRHLVLEMGARGKGHIRYLTDLT 183 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259 G N+G HI ++A AK L E LP + A++ ADD + + R Sbjct: 184 PPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEA-LPAAAEGGVALLNADDPLVRAMATR 242 >gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +DSR +Q G +FV + G + DGH F+ +A ++GA AI+ L D SA I Sbjct: 25 VCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKGASAIIAQQ--PLFDLSAGI--- 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P+L+V +T L A ++AVTG++GK+S + + R G ++ Sbjct: 80 -PVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKECIAGVLGRRGQAA 133 >gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK1087] Length = 456 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 90/399 (22%), Positives = 166/399 (41%), Gaps = 65/399 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I++G +FV + G + DGH FIP A AQGA A + S + ++V Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGAAATL----------SERPVAEGAYILV 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGLSSFQIG 148 D+ A K +++AVTG++GK++ + + + G + +IG Sbjct: 81 DDVLTAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIG 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 T+ +D + G H+ D H L + K G Sbjct: 141 LPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DIHLLSELAKPKTG 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T +G H+++ ++ KM++ + L K+ I+ AD +++ A C++ Sbjct: 180 IVTLVGEAHLEFFGSRTEIAQGKMQIADGL-RKDGLLIVPAD-----KIVNEFLPADCKL 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLC 322 + G I L ++ +++ ++S E +FL P+ G++ NA++AA Sbjct: 234 VRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYTA 285 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381 + G+ A + + +L + R E+ + G I D Y ++ +IL+ TI + Sbjct: 286 LQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAMRLILETFSTIPA 344 Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 GR + V + + + G + L + IVTD Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter segnis ATCC 21756] Length = 462 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 36/364 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R ++ G +FV +VG + DGH F+PQA+A GA ++ + + P Sbjct: 28 VSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVANGAAGVLAAQPV-----------DAPA 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++V++T K L + P AVTG+ GK+SV V+ + +G + + Sbjct: 76 VMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSVTRAVEAGLRLAGKAH------A 129 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFT 210 ++ S+ +N + P+ LA+ + + + V + + +H + L ++ A + T Sbjct: 130 SVKSY--NNHIGV--PLTLAR-MPRDTERAVFEIGM---NHADEITPLSSFVQPHAVAIT 181 Query: 211 NLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 +G HI+ + + AK +F L+P A++ AD+ + + A G V S Sbjct: 182 TVGPVHIENFPDGEAGVARAKAEIFAGLMPG-GIAVLNADNRWFDYLKGEAEKVGATVWS 240 Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G QG L + V++ + G+ F G N+L + A+ + Sbjct: 241 FGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLLMLEALDVP 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNI--RTITSGR 383 L L + GR GG VD ++ +N S++ LK + R + R Sbjct: 301 RETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLGARKVAGRR 360 Query: 384 IIVV 387 I+V+ Sbjct: 361 IVVL 364 >gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991] gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991] Length = 440 Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 122/280 (43%), Gaps = 57/280 (20%) Query: 119 AVTGTSGKSSVASFVQQICQRSG--LSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175 A+TGT+GK+++ + + ++ ++ G + + IG P S ++ +D Sbjct: 107 AITGTNGKTTITTMLYEMLKKKGQAIVAGNIGYPLSELALRYEDE--------------- 151 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMR 232 V V++E L +L GI+ A + + NL DH+DY + ++Y+ +KMR Sbjct: 152 ------VKDVALE-----LSNFQLLGIEQFAPTVSVVCNLAPDHLDYMPSVESYYASKMR 200 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ--- 289 ++E KE + D VM+ A N C+V+ F +K C +H Sbjct: 201 IYENC--KEDAWFLRNLD--DPIVMEYAKNIPCKVID------FSLTRKNCPLHRANGKV 250 Query: 290 --QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + + E K L G++ + NA++AA + +G+ + + + V R E Sbjct: 251 YFEDVVLFEEKS----LALKGDYNLSNAMIAACMAYRLGVSCEDIQTVIAQFQPVEHRME 306 Query: 348 FVGTNSRGGRIYVDYAHTSN-----SLEMILKNIRTITSG 382 ++G RG + Y D T+ +L KNI + G Sbjct: 307 YIG-EKRGVKFYNDSKATNTHAVEAALHCFDKNIILLAGG 345 >gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 1 str. 16M] gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. 16M] gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 1 str. Rev.1] Length = 467 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + L Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLELPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans 743B] gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans 743B] gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans 743B] Length = 461 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 35/323 (10%) Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSV 129 +S S+ ++A I + P LV N R + G K ++ +AV+GT GK++ Sbjct: 68 ISEDVSVIVYTAAIAKDNPELVSANNRNLPMFTRAEFLGEIMKDYKHNIAVSGTHGKTTT 127 Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S V I + + G I+ + + T S +L +A Y S Sbjct: 128 TSMVSHILLKGEKDPTILVGGSLDIINGYVR----TGKSDYFLTEACEYKGSF------- 176 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 L + GI L N+ DH+DY++ A + F L+P++ I+ Sbjct: 177 ------LSFYPTIGIIL------NIDADHLDYYKDIDEIEEA-FQKFAYLIPRDGYLIVN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFP 305 +D + V K N+ C ++ G I K V ++ + + F Sbjct: 224 NEDERAVNVAK---NSNCNTITFGIDNGDIIAKNVTFNSLGHGSFDMFYKGCEYFHVTLK 280 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG V N+L A IA GI+ + +E RFEF GT + DYAH Sbjct: 281 VPGRHNVLNSLSAMAAAIASGIEPNHIKAGIESFGGTHRRFEFKGT-VDDITVIDDYAHH 339 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 ++ L+ + ++ R+I VF Sbjct: 340 PTEIKATLEACKNVSHNRLICVF 362 >gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP08] gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile NAP07] Length = 457 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 67/432 (15%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 LIY D+ + ++ + I DSR A FVAIVG DGH F+ A Sbjct: 17 LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G + + + + ++ S+ I ++ V +T L + K + VTG+ G Sbjct: 62 SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVG 117 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + ++ ++ + L + L L LS + V Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLSKEHECAV 163 Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E G ++ + +D + +N+G H++ +Q+ AKM + + + Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DEANT 221 Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 I+ DD + + ++ H N + Y + L +C I+ K++ Sbjct: 222 LIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE---- 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P GE +YNA+ A GLC+ I +D + + L+ R + + N Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408 + I Y + +S++ LK I GR + + G G + G R ++GK +++ Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386 Query: 409 LADIAIVTDDNP 420 DI I +N Sbjct: 387 NTDIIITIGENS 398 >gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Xanthomonas albilineans GPE PC73] gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase protein [Xanthomonas albilineans] Length = 501 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 57/358 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S D+R + AG ++VA+ G + DGH F A +GA A++V + Sbjct: 24 IDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLPQIEL------- 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF----VQQICQRSGLSSF 145 P +VV +T+ L+ A+ + + A+TG++GK+SV + +Q C+ G S + Sbjct: 77 -PQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALLLAILQYACRLDGGSVY 135 Query: 146 --------QIG-PTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVEASS 191 +IG P + I+ A D+ IY A ++YL+ VS+ Sbjct: 136 ANPGNHNNEIGLPLAVIA--APDD---ADYAIYEMGAGKPGDIAYLTDIAPPRVSL---- 186 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + IA + + QT+ A + A LP + A+I DDA Sbjct: 187 ----------VNNIAPAHLERMGSLLGVAQTKGAIYAA--------LPADGTAVINIDDA 228 Query: 252 YSKEVMKRAHNAG-CRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + ++ A RVL G Q G + ++ ++ + + + PLPG Sbjct: 229 FGLWFEQQLSAASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGR 288 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + NAL AA L +A+ + A + L ++ VPGR + GG + +D ++ +N Sbjct: 289 HNLLNALAAAALALALDVAPARIAAGLAQVQPVPGR--QISHTLPGGAVLIDDSYNAN 344 >gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces limnophilus DSM 3776] Length = 480 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 151/326 (46%), Gaps = 26/326 (7%) Query: 27 ERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 E+K + VS DSR ++ G +F+A+ + DGHLF+ A GA ++ + + A+ Sbjct: 28 EKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEAE--FAS 85 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ + P +VV ++ L L A+ + ++ +TG+ GK+S S + ++ Q Sbjct: 86 LKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQA------ 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 + + ++F +N L P I + + + + A G D RL I + Sbjct: 140 RYSGRQSPANF--NNTLGLPLSILELEC----TRDEFAVLEMGAGQRG-DIARLCEIAQP 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G T++G H+ T + +K LFE LP+ A D ++ + +AH Sbjct: 193 EMGVITSIGLAHLATFGTPLSVAESKAELFES-LPENGVAFFPGHDPFALVLKDKAH--- 248 Query: 265 CRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 CR ++VG +++V A+ + + + +G+D+ F+ + F V NA +A + Sbjct: 249 CRTVTVGEDTVNDWTIQQVRAVRDGYRFVM--DGQDY-FIRTVARHF-VQNAGLAIAVGR 304 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV 349 +GI +A + + L K V GR + Sbjct: 305 EVGISNAEIADQLAKWQPVSGRCSLI 330 >gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817] Length = 426 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 74/349 (21%), Positives = 157/349 (44%), Gaps = 55/349 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +V DSR I+ +F AI +G+ +I + + +GA +V++ YS D Sbjct: 19 EILKVVMDSRKIEKDSLFFAI----NNGNKYIDEVLERGA-TLVIADDYSGDD------- 66 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++VV++T K + A ++A+TG++GK++ + + + ++ Sbjct: 67 -SRVIVVEDTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQK----YRCK 121 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T +N + P I L + V+ + + S G + K Sbjct: 122 KTEG----NYNNHIGLPFTI-----LQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYAL 172 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G H+++ +T++ F AK + + ++ + II+ DD Y K + +G + Sbjct: 173 ITNIGDSHLEFLKTRENVFKAKGEIIKYVVSE--NLIIFGDDYYLKNL------SG---I 221 Query: 269 SVGYQGKFIHLKKVCA--IHN----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +VGY+ K C I N + + S+EG ++ L G+ N +A + Sbjct: 222 TVGYE-------KNCKKRIENFKDTDEGIEFSLEGNNYK--INLNGKHNCINGAMAVVVG 272 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +++ + S + + + L++ P RF+ + +G +Y++ A+ ++ + M Sbjct: 273 MSLDLTSEEIQKGFDNLNLTPMRFQKI---VKGETLYINDAYNASPISM 318 >gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora arenicola CNS-205] Length = 474 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 89/377 (23%), Positives = 151/377 (40%), Gaps = 58/377 (15%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V DSR + G +FVA G + DGH + AI GA A++ + Sbjct: 28 GSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEGAIRAGAVAVLGTRPV----------PAV 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+++VD+ + L A + + P ++ +TG+SGK+S + + R +GP Sbjct: 78 PMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSGKTSTKDLIAALTSR-------LGP 130 Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIK 203 T + SF +N L P + + YL ++GV H+ ++ D + Sbjct: 131 TVAPPGSF--NNELGHPYTALQAGPDTRYLVLEKGARGVGHI----------RYLCDVVP 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 N+G HI +++ AK L LP + A++ ADD + R Sbjct: 179 PQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPADGLAVLNADDGLVAAMATRTQ-- 235 Query: 264 GCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RV+ G + + V + T+ + L G QV N+L AA + Sbjct: 236 -ARVIRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSLAAAAV 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRI----YVDYAHTSN--SLEMIL 373 +G+ L +L +V G V T RI +D ++ +N S+E+ L Sbjct: 295 ARELGM-------PLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASMEVAL 347 Query: 374 KNIRTITS-GRIIVVFG 389 + + +I R + V G Sbjct: 348 RALASIGQRRRTVAVLG 364 >gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Elusimicrobium minutum Pei191] Length = 450 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 N +DSR + G IF A+ G K DG+ F+ A+ GA A+V ++ N Sbjct: 27 FNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNAVDAGASALVADKFFA----DKIDLKN 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 T ++ V+NT L A+ + ++A+TG++GKS+ + IC+ SG + +G Sbjct: 83 TALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKSTTKQMLLSICKTSGPARANMG 141 >gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Psychromonas ingrahamii 37] gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Psychromonas ingrahamii 37] Length = 489 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 11/117 (9%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E N +S+D+R I++G +F+A+ G + D H F+ +A+ QGA A+++ Sbjct: 37 EAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEKAVQQGAGALLIDQKK--------- 87 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQI-CQRSG 141 RS+ P ++V +TR L L AS + + A+TG++GK++ + I C +G Sbjct: 88 RSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNGKTTTKELLSAILCCHTG 144 >gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Thermosynechococcus elongatus BP-1] Length = 456 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 93/374 (24%), Positives = 153/374 (40%), Gaps = 62/374 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I + +DSR I AG +FVA+ G DGH F+ QA A GA A++V A + S+ Sbjct: 32 ITGICTDSRQIAAGNLFVALRGETFDGHQFVDQAAAAGAIALMV---------EAPLSSD 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V NT + P ++AVTG+ GK++ + + G Sbjct: 83 LPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGKTTTKEMIAAVLSHYG------AV 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQ---GVTHVSVEASSH--GLDQHRLDGIKL 204 T ++F +N + P K L L V + + A L Q + + Sbjct: 137 LKTEANF--NNEIGVP------KTLLQLEPHHQFAVIEMGMRARGEIALLSQIAQPDVAV 188 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 I TN+G HI +++A AK L E +P A++ AD + + + Sbjct: 189 I----TNVGTAHIGRLGSREAIAQAKCELLAE-MPPGGTAVLNADSPLLLPTVAQVWSG- 242 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R ++ G +G + I+ Q T+ V G+ + PL G N L A G+ A Sbjct: 243 -RTITYGLEGGTLR-----GIYQPPQ-TLHVGGRTYT--VPLAGAHHALNFLAALGVLQA 293 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-------IYVDYAHTSNSLEMI--LKN 375 + ++S ++L P + + RGGR + +D + + M+ L Sbjct: 294 LDVES-------DRL---PVQLTLELPSGRGGRYRLEPDILLLDETYNAGLESMVAALHL 343 Query: 376 IRTITSGRIIVVFG 389 +R++ R + V G Sbjct: 344 LRSLPGQRHLAVLG 357 >gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057] gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057] Length = 834 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 53/377 (14%) Query: 30 INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA--- 84 I+ + +DSR + +F A+ + DG +IP A+G VVS S +D + Sbjct: 24 IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGVRNFVVSEE-SYRDIESGKL 82 Query: 85 --TIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 T +P+ L+V N K L A + GK ++ +TG++GK+ V ++ Q+ Sbjct: 83 KPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVIGITGSNGKTIVKEWLHQL--- 139 Query: 140 SGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLD 195 I P I S + ++++ P ++ S L+ G+ S G Sbjct: 140 -------ISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGI-------SEPGEM 185 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY- 252 + + IK G TN+G H Q+ +F+ + + E+L L K +IY DD + Sbjct: 186 RALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLVLFKNCDVVIYNGDDEFI 239 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP--GE 309 S V K +A S + +++ KV K++ T IS D D F LP + Sbjct: 240 SNCVAKSMLSAREIAWSRKDMERPLYISKV---EKKEECTVISYRYLDMDNTFTLPFIDD 296 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367 + N+L C+ + + + + E + KL V R E + G + ++ ++ S+ Sbjct: 297 ASIENSLNCLAACLYLMLPAEKITERMAKLEPVAMRLEV--KEGKNGCLLINDSYNSDLG 354 Query: 368 SLEMILKNI--RTITSG 382 SL++ L + R++ +G Sbjct: 355 SLDIALNFLYRRSLVNG 371 >gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 458 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 38/253 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPIL 93 DSR I+ G +FVA+ G DGH FI A ++GA +VSS++ ++D IR I Sbjct: 35 DSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWGEKIRDLPEGIRV---IE 91 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS--FVQQICQRSGL------SSF 145 V D + + + RL G +N++AVTG+ GK+S F+ SG+ + Sbjct: 92 VADPEQGLIKIARHRLKGL--KNVIAVTGSVGKTSTREMIFLALGGSSSGVYRARSSHNT 149 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG T++ +D + + G H S +D + +D Sbjct: 150 RIGCALTVAEMPEDTSV-------------LILEMGTNHPG--EISEMVDLYPVD----- 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAG 264 T + H++ + + +AK+ + E P I D+ S V +R+ Sbjct: 190 TAVITEIAPAHLEGLGSLEGVLDAKLEILES--PNLRKVIFNGDNPMLSSAVKERSFGKN 247 Query: 265 CRVLSVGYQGKFI 277 + LSVG G ++ Sbjct: 248 WQALSVGSSGSYV 260 >gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oceanospirillum sp. MED92] Length = 457 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I G +FVA+VG DGH ++ QA ++GA A VVS + S+ S Sbjct: 27 VSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSV--------SRKAA 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 VVD+TR L+ A + + AVTG+SGK++V + I ++ Sbjct: 79 WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQN 126 >gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium jeikeium K411] Length = 504 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 100/418 (23%), Positives = 158/418 (37%), Gaps = 86/418 (20%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------------------- 73 V DSR I G IF+A+ G + DGH F A+ GA ++V Sbjct: 31 VEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRPVEQPALLAAPVEINEQ 90 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +S + +F A + +D ++ + L + ++ VTG++GK+S + Sbjct: 91 TSNATAFEFDAEGHGAAVLAAIDKLARYNT---DVLAAEEGMVVVGVTGSAGKTSTKDLI 147 Query: 134 QQICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + +G + SF +IG T +D R +S +S++GV H+ Sbjct: 148 GAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFL----------VSEMSARGVGHI- 196 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--- 243 QH G N+G H+ ++QA AK L E L P + Sbjct: 197 ---------QHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL-PAAADGGL 246 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----------IHLKKVC----AIHNKQ 289 A++ ADD + KR R + G G I L V +H+ Sbjct: 247 AVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPV 306 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFE 347 + VE F G QV NAL AA + I +GID+A V L HV R + Sbjct: 307 GEPVRVELSVF-------GAHQVSNALAAAAVGIEMGIDAATVASLLSS-HVAASVNRMD 358 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 S G I D + N ++ +G + + G RD ++G++ Sbjct: 359 VRTRESDGVTIINDSYNA---------NPESMRAGIDALAYTAKGRRDAASWAVLGQM 407 >gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/330 (20%), Positives = 135/330 (40%), Gaps = 43/330 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G E ++ ++A S +D I + L + +FL L K+ +N++A++GT G Sbjct: 59 HGDETVIYTAAIS-KDNPELIAAKRMNLKIYERAEFLGLLM-----KNFKNVIAISGTHG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182 K++ S + I +++ + PT + +F + N + + +A Y+ S Sbjct: 113 KTTTTSMIGYILKKASYN-----PTILVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++ G N+ DH+DY + + N+ + F + +P Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD K+V+ + H +S + C N V+ + + Sbjct: 208 FLVANCDDKNVKDVISKLHTQ-VVCISTKEKADIFAGNISC---NDGYYEFDVKNNNDEI 263 Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 L +PG VYN+L A + +G++S + + L + R E VG G + Sbjct: 264 LAHIKLNIPGFHNVYNSLAAFAVASKLGVESITIEQALSEFCGASRRLEKVG-EFDGIYL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 Y DYAH ++ L ++ ++ G++ +F Sbjct: 323 YDDYAHHPTEIKATLATLKKLSEGKVFAIF 352 >gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 458 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 43/233 (18%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V+ DSR G +FVA+ G DGH F P A+ GA A++ + L Sbjct: 25 QVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAARPLGL--------- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLS 143 P +VV++ L +A H E +++AVTG+SGK+S + Q+ R+G + Sbjct: 76 --PAVVVEDPLAALGAWAR----AHVEALADLDVIAVTGSSGKTSTKDLIAQVLDRAGAT 129 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQ-HRLDG 201 F T SF +N + P L+ L + T H+ VE + G L G Sbjct: 130 VF------TQGSF--NNEIGLP--------LTALEATADTRHLVVEMGARGQGHIAYLTG 173 Query: 202 IKLIA-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250 I G+ N+G H AK L E LP + A++ ADD Sbjct: 174 ITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEA-LPAAAEGGVAVLNADD 225 >gi|28210045|ref|NP_780989.1| cyanophycin synthetase [Clostridium tetani E88] gi|28202480|gb|AAO34926.1| cyanophycin synthetase [Clostridium tetani E88] Length = 874 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 151/352 (42%), Gaps = 36/352 (10%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L+ ++ G TST + N + AL+ L+++ V + +E + G+ + L Sbjct: 499 LAGYKTGFTSTGGIYIDGNIIDEGDTTGYNSALTLLTNKEVEAIVLETARGGIIKKGLAY 558 Query: 202 IKLIAGSFTNLGRDHI--DYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ D T + AY + L E + E ++ ADD S +++ Sbjct: 559 DLADVGVITNITTDHLGLDGIDTLEDLAYVKS---LIGEAVKDEGYVVLNADDVMSMKII 615 Query: 258 KRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFP---------L 306 R + + S KFI +L K C + + +E KD + L Sbjct: 616 NRIK-SNVILFSKDKNNKFIREYLNKGCFAIYVHEGYMYIE-KDNKIIPLININNIKIGL 673 Query: 307 PG--EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYV 360 G ++ + NA+ A + I++GI+ + + +E ++ +PGRF R I + Sbjct: 674 QGKLDYNIENAMAACAVGISMGINPIYIRKAMESFNLDENYIPGRFNIYSFKDR--TIIL 731 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDDN 419 DY H + ++K + + R+I V G GDR+ +G+I D I I D + Sbjct: 732 DYGHNAEGYNAVIKGAKKLKHNRLIGVIGAPGDRNDEHLIKLGEIGGKNFDYIYIKEDKH 791 Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464 R+ + + GI GF + +I +A++ AI+ K D++V Sbjct: 792 NRTRKKGDVAKLLKTGILNTGFNKDNIKIILKEEDALKEAIKYSKKGDLIVT 843 >gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium jeikeium ATCC 43734] Length = 504 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 100/418 (23%), Positives = 158/418 (37%), Gaps = 86/418 (20%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------------------- 73 V DSR I G IF+A+ G + DGH F A+ GA ++V Sbjct: 31 VEFDSRKITPGAIFMALPGARADGHDFADAALNSGAALLIVGRPVEQPALLAAPVEINEQ 90 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 +S + +F A + +D ++ + L + ++ VTG++GK+S + Sbjct: 91 TSNATAFEFDAEGHGAAVLAAIDKLARYNT---DVLAAEEGMVVVGVTGSAGKTSTKDLI 147 Query: 134 QQICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + +G + SF +IG T +D R +S +S++GV H+ Sbjct: 148 GAVLREAGETVAPPGSFNNEIGLPYTALRAGRDTRFL----------VSEMSARGVGHI- 196 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--- 243 QH G N+G H+ ++QA AK L E L P + Sbjct: 197 ---------QHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL-PAAADGGL 246 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----------IHLKKVC----AIHNKQ 289 A++ ADD + KR R + G G I L V +H+ Sbjct: 247 AVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARASFMLHHPV 306 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFE 347 + VE F G QV NAL AA + I +GID+A V L HV R + Sbjct: 307 GEPVRVELSVF-------GAHQVSNALAAAAVGIEMGIDAATVASLLSS-HVAASVNRMD 358 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 S G I D + N ++ +G + + G RD ++G++ Sbjct: 359 VRTRESDGVTIINDSYNA---------NPESMRAGIDALAYTAKGRRDAASWAVLGQM 407 >gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Halothiobacillus neapolitanus c2] Length = 474 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 141/350 (40%), Gaps = 46/350 (13%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +NQLS+ Q + I VS+D+R + G +FVA+ G + DGH + A GA A +VS Sbjct: 13 LNQLSV---QQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGAAAAIVS 69 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 D P + V++T L G+ ++A+TG++GK++V + Sbjct: 70 HLNPDIDL--------PQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQLLA 121 Query: 135 QICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASS 191 IC Q GPT +T+ + D + L+ LS + +V ++ Sbjct: 122 SICA-------QAGPTLATLGNLNND----------IGVPLTLLSLSDIDQFAVIEMGAN 164 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 H + RL + + G T G H+ + A K LF L+P E+ A+I D Sbjct: 165 HLGEIARLTALARPDVGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVP-EAQAVINL-D 222 Query: 251 AYSKE---VMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +Y + M A G + + + G++ + I Q+ I + Sbjct: 223 SYGADRWWAMGSAQRNGFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQP------L 276 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PLPG N L A + G ++L L GR V + + Sbjct: 277 PLPGAHNATNLLAAVAVARTAGFSKEIILAGLNSFTPPAGRMSLVACSEQ 326 >gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mesorhizobium sp. BNC1] gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chelativorans sp. BNC1] Length = 477 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 158/391 (40%), Gaps = 38/391 (9%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ + P + +S DSR +Q G F AI G++ DGH F A+A GA +V Sbjct: 9 DLVAAVGGRPFGALPEGVTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLAMAAGAGLLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 +S + A R P +VV + K L A+ + ++AVTG++GK++ Sbjct: 69 ISE----EKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKTTTKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVS-V 187 + R LSS T+ + A+ P+ LA+ A + G+ H + Sbjct: 125 L-----RHALSS-----VGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEI 174 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E + + H + + LIA + H+ + ++ AK +F ++P AII Sbjct: 175 EPLTQLVKPH-IAIVTLIAAA-------HLGHFKSLDEIAEAKGEIFAGVVPG-GHAIIN 225 Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 DD K + A AG R V G + L + + VTI V G++ Sbjct: 226 RDDQRFKLLADMAAEAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIG 285 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYA 363 PG V NAL G G D + +L L GR +G G +D + Sbjct: 286 APGRHMVQNALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIG-EGMFTLIDES 344 Query: 364 HTSNSLEM-----ILKNIRTITSGRIIVVFG 389 + +N M +L + GR I V G Sbjct: 345 YNANPASMKAALQVLDSSPVSNGGRRIAVLG 375 >gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase [Clostridium sticklandii DSM 519] gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Clostridium sticklandii] Length = 457 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 151/365 (41%), Gaps = 34/365 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI V +DSR IQ ++AI G DG+ FI QAI A ++++S+ S S Sbjct: 25 KIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQAINNKA-SVILSNRQS---------S 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 N ++ V++T L A + LAVTG+SGK++ + + F Sbjct: 75 NKEVITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKTTTKDMLYYV--------FNEH 126 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++ + +N + P AL+ + S+ G + ++ Sbjct: 127 FSTHRTDGNYNNEIGLP-----LTALNIDKGYEAAIFEMGMSALGEIDYLAQIVRPNIAI 181 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI+ ++Q+ F AKM + L + I+ DD Y + + + Sbjct: 182 ITNIGSCHIEILKSQENIFKAKMEI-SNYLNNDDYLIVNGDDKYLTSLSENEYKFNLIKY 240 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIG 326 G + + + A+ + + ++ G + F P G V NAL +AAGL I Sbjct: 241 GFGEECQ-LRASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAIAAGLIYKIP 299 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 + + L K R + + N+ Y++ ++ +N S+E ++ + + GR Sbjct: 300 TEK--IQAGLMKFQPSKLRMQILEKNNIK---YINDSYNANPESMEAVITSFESYARGRK 354 Query: 385 IVVFG 389 I + G Sbjct: 355 IAILG 359 >gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium breve DSM 20213] Length = 481 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 51/369 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + E +DSR +G +FVAI G + DGH F+ + QGA A +V + + Sbjct: 26 EATETVTDSRQAGSGAVFVAIKGERVDGHGFVDKVADQGAAAAIVDHEVAC--------T 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLS 143 P +VV++T L L A + + +++ +TG+ GK++ + + Sbjct: 78 TMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLTGSVGKTTTKDLLSALLS----- 132 Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +GPT + I SF + L + A +++ G H+ + + Sbjct: 133 --TLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIG-----------EIARL 179 Query: 203 KLIAGSFT----NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 IA T +G H+ +++ AK + + LLP + A++ ADD Y V+ Sbjct: 180 TRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDDY---VVP 235 Query: 259 RAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQV 312 A A VL G QG + + + T++ G+ +PG V Sbjct: 236 MAQFASGDVLWFG-QGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNV 294 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSN--S 368 NAL AA + + G+ + + L H + + T SR G + +D + +N S Sbjct: 295 MNALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDS 354 Query: 369 LEMILKNIR 377 ++ L +R Sbjct: 355 MKAGLDGLR 363 >gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax paradoxus S110] gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax paradoxus S110] Length = 707 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 30/184 (16%) Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHP 114 G ++P A + AE + + + SAT ++ + D + K + + + Sbjct: 256 GQPYVPTAAREAAEFVA-----KIAELSATNPASAAVEEEDTPQLKLVPIEEPPAPRGYT 310 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 +LAVTGT+GK++V + Q+ +R+G S + IGPT L Sbjct: 311 PAVLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPT------------------LLD 352 Query: 172 KALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 +++ ++ + V V E SS LD + G + A + NL +DH+D+H QAY +AK Sbjct: 353 TLAAHIDAETLPDVWVLELSSFQLDG--VQGFEPTAATVLNLTQDHLDWHGDMQAYASAK 410 Query: 231 MRLF 234 R+F Sbjct: 411 ARIF 414 >gi|330938043|gb|EGH41811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 106 Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 10/90 (11%) Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN------RIEAIRT 451 KRP+M ++ LAD VTDDNPRSE P I +I PGF+ R +AI Sbjct: 1 KRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI---RPGFVAADKVRFIEGRGQAIAE 57 Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481 I N DV+V+AGKGHE + NG+++ Sbjct: 58 LIASANADDVVVLAGKGHEDYQEI-NGQRQ 86 >gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016] Length = 453 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+RHI +F+A+VG + D H F QA+ GA A++V A L P+ Sbjct: 27 VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVERALDL-----------PV 75 Query: 93 --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV +T+ L + ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 76 AQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133 >gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens YS-314] gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens YS-314] Length = 489 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 49/291 (16%) Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 + GT GK+S S Q +G+ SF IG Q N+ T + Sbjct: 128 IAGTHGKTSTTSMAVVALQAAGMDPSFAIG--------GQLNKAGTNA------------ 167 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG V A + D L IA TN+ DH+D+ +T +AYF ++FE+ Sbjct: 168 HQGTGEAFV-AEADESDASLLRYTPEIA-VVTNIEPDHLDFFKTPEAYF----QVFEDFA 221 Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------IH 286 + +P ++ DD + + +RA G + G V + Sbjct: 222 DRLTPGGTLVVCLDDPGAAALGERAVARGINAVGYGTVDAVAAHPTVPVKATILSSRVVA 281 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + ++G++ + + +PG V N A +G D + L V RF Sbjct: 282 EGTYAVLDIDGREVEIILQIPGNHMVLNGAAALLSGYLLGADLDKLAAGLSDFSGVRRRF 341 Query: 347 EFVGTNSRGGR-----IYVDYAHTSNSLEMILKNIR----TITSGRIIVVF 388 E+ GT RGG+ +Y DYAH +E +LK R GR+IV F Sbjct: 342 EYHGT-VRGGQFDGASVYDDYAHHPTEVEAVLKAARERVDAAGEGRVIVAF 391 >gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Epulopiscium sp. 'N.t. morphotype B'] Length = 458 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 43/298 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E+ +DSR +FV ++G K DGH +I A GA A + S + ++ + Sbjct: 27 IEEIFTDSRQKVNKGLFVPLIGEKFDGHDYIDDVKAMGALATLTSKK------NDSVHQD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142 + V++T+K L A K I+A+TG+ GK++ V + + + G Sbjct: 81 LITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGKTTTKEMVAAVLETTLKVHKTVGN 140 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201 + +IG T+ + ++D++++ + G+ H + RL Sbjct: 141 YNNEIGVPKTMFALSEDDQVS-------------VIEMGMNHFG--------ELSRLTSV 179 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K TN+G HI++ ++++ AK+ + E L P E II D+ +M + Sbjct: 180 VKPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKP-EGTVIINGDEPL---LMGKKQ 235 Query: 262 NAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + ++ G+ + + + V + + F P PG NAL+A Sbjct: 236 D---NWITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIA 290 >gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1] Length = 503 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +S D+R ++AG F AI G++ DGH F+ A GA VVS Q A R Sbjct: 27 ISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKAGAALHVVSE----QKLPALGRVQ 82 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 +P+L+VD+ K +S A + I+AVTG+ GK++ Sbjct: 83 SPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTT 122 >gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp. Y9602] Length = 453 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 9/115 (7%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I+ V++D+R I G +FVA+ G K D H F A+ G+ A++VS + Sbjct: 21 DTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGSGALLVSKRLPV------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P LVV +TR L + + P ++ +TG+SGK+SV I + G Sbjct: 74 --DVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEMTAAILRECG 126 >gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SS3/4] Length = 462 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/324 (22%), Positives = 130/324 (40%), Gaps = 44/324 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR ++ G +FV I+G K D H F+ Q +GA A++ S + A ++ Sbjct: 26 LNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLTSEHKEKTEEMA--ETS 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142 + VD+T+K L L + I+ VTG+ GK++ + + + G Sbjct: 84 CAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMIAAALSARFHVYKTPGN 143 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 S+ Q+G T+S +++ + GV + + + L I Sbjct: 144 SNSQVGVPITVSEITKEDEV------------------GVLELGMS------EPGELTVI 179 Query: 203 KLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 IA TN+G HI+ +++ + K+ + ++ L I+ DD + + Sbjct: 180 ARIAKPDVAVITNIGITHIEQLGSRENIYREKLTI-QDGLSDGGILILNGDDDM---LCR 235 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 G + + G G+ + V + K + T GK L + G V NAL Sbjct: 236 TRGKVGVKTVYYG-TGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNAL 294 Query: 317 VAAGLCIAIGIDSALVLEHLEKLH 340 A +C G+ E L H Sbjct: 295 AAIAVCCERGMTMEEAAEGLLTFH 318 >gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1] Length = 460 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 126/325 (38%), Gaps = 62/325 (19%) Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQI 136 ++F A + N P+L TR ++L G+ EN +AV+GT GK++ S + I Sbjct: 84 EEFKAAVEKNIPML----TR-------AQLLGQIMENYKYSIAVSGTHGKTTTTSMLSYI 132 Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 L PT ++ N S ++ +A Y +S Sbjct: 133 -----LIDADTDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNS-------------- 173 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 K N+ DH+D+ + +F PKE I+ D Y Sbjct: 174 -----YHAFKPFISIILNVDADHLDFFKDIDE-IAESFHVFATKTPKEGLVIVNGDMKYY 227 Query: 254 KEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ-------QVTISVEGKDF-DFL 303 V++ + CRV++ G Q K+ + HN + T+ V+GK+ D Sbjct: 228 DTVVR---DLECRVVTFGKGAQNKY-------SAHNIRFDDFGHPTYTLVVDGKEITDIT 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + GE VYN+L A + +GI ++ + L + RFE+ GT R+ DYA Sbjct: 278 LKVFGEHNVYNSLSAIAASLELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYA 337 Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388 H + LK + + + VF Sbjct: 338 HHPTEIAATLKAAKNTSYNELWCVF 362 >gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS] gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS] gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS] gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS] gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS] gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS] Length = 484 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 11/188 (5%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ + +AY A F E L I DD S + +R G RVL Sbjct: 189 TNIEADHLDFFGSAEAY-TAVFDAFVERLTPGGALIACVDDPGSAALAERTAALGVRVLR 247 Query: 270 VGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G G + + + ++ E +PG NAL A + Sbjct: 248 YGSAGGRDLAGALVGWEQQGTGAVAHIQLAGESAPRAMRLSVPGRHMALNALGALLAALQ 307 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---- 380 +G D VL+ L V RFE VGT + G R++ DYAH + L +R +T Sbjct: 308 VGADPDTVLDGLAGFEGVRRRFELVGTAT-GVRVFDDYAHHPTEVAATLAALRAVTDQAG 366 Query: 381 SGRIIVVF 388 GR +VVF Sbjct: 367 DGRAVVVF 374 >gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio vulnificus MO6-24/O] Length = 453 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+RHI +F+A+VG + D H F QA+ GA A++V A L P+ Sbjct: 27 VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVERALDL-----------PV 75 Query: 93 --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV +T+ L + ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 76 AQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133 >gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325] Length = 453 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/337 (21%), Positives = 150/337 (44%), Gaps = 38/337 (11%) Query: 7 IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 + KD +++N I ++ +E I ++ DSR ++ G +F+ +G DGH +I A + Sbjct: 4 LVKDLEQILNAKKINIVENKE--ITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESAFEK 61 Query: 67 GAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA A + SL +DF+ S+ I+ V+++ + A I+A+TG++G Sbjct: 62 GAAA-----SLSLKEDFT----SDNNIIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + + + + F++ T +F +N L P I A S + + Sbjct: 113 KTTTKDIITGLLE----TKFKVHKTQ--GNF--NNELGVPITILAAPEDSEI-------L 157 Query: 186 SVEASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +E + G Q LD + KL+ + TN+G HI++ +++ AK + + K+ Sbjct: 158 VLEMGADGFGQ--LDFLSKLVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNG-MKKD 214 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 + D+ K+++ +++ Y + + H ++ +S D Sbjct: 215 GFFVYNGDEVLLKDLVDKSNIGATSCGENDYNNIILENYTITRDHIDFKLNLS----DEK 270 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 F L G+ ++N + A + +G+ + + +EK Sbjct: 271 FTTKLKGKHNLFNIMFATAIAEKLGLSIDEIRKAIEK 307 >gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens] Length = 521 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 44/319 (13%) Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 D +A I++ P L A+ L G + AVTGT+GKS+V +F QI + + Sbjct: 133 DIAAAIQAGVPAF------SELGFAAAALPGN--IKVAAVTGTNGKSTVTTFTSQILRNA 184 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRL 199 G+ +F G L TP + + L++ + V+ VE SS+ L+ Sbjct: 185 GVRTFVGG------------NLGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLE---- 228 Query: 200 DGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + GSF NL DH++ H++ +AY + K R+F + + AII D Sbjct: 229 -----LPGSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSRMEASDV-AIIPQSDVL 282 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + + + R G G + L K T VE + + G Sbjct: 283 LRRLAAMSGSQATRAWMGGLPG--VQLDKDARRAIVVVPTTGVEARLYLSSLQAVGTHNA 340 Query: 313 YNALVAA--GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 +NA AA L + +G+ S + + L P R E V + + G ++V+ + +N ++ Sbjct: 341 HNAGTAALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQ-GVVWVNDSKATN-VD 398 Query: 371 MILKNIRTITSGRIIVVFG 389 IR+I + +V+ G Sbjct: 399 STSVGIRSIVGKKAVVLLG 417 >gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Actinobacillus succinogenes 130Z] Length = 480 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 13/122 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+DSR + +F A+ G K D H ++ A+ QG A+VV A + N Sbjct: 25 VETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVEQGNTAVVVEHACEV---------N 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQICQRSGLSSF 145 P +VV +TR L A L + +A+TG+SGK++V AS +QQ ++S + + Sbjct: 76 VPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSGKTTVKEMTASILQQTARKSAVKNT 135 Query: 146 QI 147 ++ Sbjct: 136 EV 137 >gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrosococcus oceani ATCC 19707] gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrosococcus oceani ATCC 19707] gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Nitrosococcus oceani AFC27] Length = 454 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 95/382 (24%), Positives = 156/382 (40%), Gaps = 38/382 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R + G +FVA+ G + DGH FI QA +GA A ++ A I P Sbjct: 30 VSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKGASAALLEQA---------INDPLPQ 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V + R L A+ + I+AVTG++GK++V + + G + Sbjct: 81 IEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKEMIASVL---GWREPVLATRGN 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + +N + P + L +S + + A+ G ++ + TN Sbjct: 138 L-----NNDIGVPLTL-----LELDTSHRFAVIEMGANRPGEIEYLSRLTRPQVALITNA 187 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLS 269 G H+D + AK +F+ + E AI+ ADD +Y +++ V+ Sbjct: 188 GPAHLDGFGDLKGVARAKGEIFQG-MGSEGVAILNADDPCFSYWRDLAGE-----LPVIG 241 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + + V A T+ PLPG V NAL A+ IA+G+D Sbjct: 242 FGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATIALGVD 301 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIV 386 + L L VPGR + GG +D + +N S + L+ + R +V Sbjct: 302 RQHLSASLAALSSVPGRLQI--RRGIGGMRLLDDTYNANPASFQAALELLAKFPGERALV 359 Query: 387 V--FGCGGDRDQGKRPIMGKIA 406 + F G+ IMGK A Sbjct: 360 LGDFAELGEEAASLHRIMGKQA 381 >gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides DSM 2048] Length = 458 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 133/332 (40%), Gaps = 37/332 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D N Sbjct: 27 IQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVENP-PEN 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V++T L + A + ++ VTG++GK+S V I + F++ Sbjct: 81 LPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSILA----TKFKVQK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I L+ + V + + SS G + + A Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+ +++A AK+ + L ++ +Y D N ++ Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNLAAETVT 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQVYNALVAAGL 321 G + VT+ G F F P+ G+ VYN L + + Sbjct: 246 FG--------DARANDYYPTTVTLQATGTHFKMNRDETSSFYLPVLGKHNVYNTLASMAI 297 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ + + L L + R E V T+S Sbjct: 298 AKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM 15053] Length = 457 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 85/392 (21%), Positives = 159/392 (40%), Gaps = 56/392 (14%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + R+ V DSR ++ ++FVAI G + H FIP I +GA +V DF Sbjct: 24 KSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIPDTIEKGALCVVSHEDLGDTDF--- 80 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P ++V++T + L A ++ +TG+ GK+S + + + + Sbjct: 81 -----PYILVESTGQALLDIAKLYRDSFDVTVVGITGSVGKTSTKEMIASVVSQK----Y 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIK 203 ++ T+ +F +N P I+ + GV H + RL + Sbjct: 132 KV--HKTLGNF--NNEWGLPITIFEMDESHEVVILEMGVNHFG--------EMRRLSSVA 179 Query: 204 LI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260 TN+G H+++ +T++ K ++ +++ S + DD SK + Sbjct: 180 SPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDDLLSKMGPVKGVT 239 Query: 261 -----HNAGCR-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 N C+ ++ +G +G C IH +G+ FD L P PG Sbjct: 240 PVLFGTNEDCQCYASGIVPMGLKGT------ACTIHLP-------DGEAFDCLIPTPGAH 286 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 V NAL A + A+G+ + + +E +PGR + T G + +D + +N + Sbjct: 287 MVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIIST---GSLMILDDCYNANPVS 343 Query: 371 MILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401 ++ + GR + V G G+ ++ + Sbjct: 344 TKAAIDVLDMAIGRKVAVLGNMGELGNNEKEL 375 >gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica OS145] Length = 470 Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 9/110 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ IN+VS+D+R +F+A+ G + D H FI QA+AQGA A++ Q Sbjct: 24 QQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPLDEQ------ 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 TP ++V++TR L L + + + +A+TG++GK++V + I Sbjct: 78 ---TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAI 124 >gi|315931390|gb|EFV10359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Campylobacter jejuni subsp. jejuni 327] Length = 98 Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 8/97 (8%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEML 456 MG I A IAI+T DNPRSE+P+ I EI+ G IE +R EAI+ A+E+ Sbjct: 1 MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIE--DRKEAIKKALELK 58 Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 D++V+ GKG ET + G K D ++ EIL Sbjct: 59 ENDDLVVILGKGDETTQEI-KGIKYPFSDKVVVNEIL 94 >gi|330893180|gb|EGH25841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. mori str. 301020] Length = 170 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 9/175 (5%) Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 +DQ R + TNL RDH+DYH T +AY AK +LF +I DDA+ Sbjct: 1 MDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFA--WSNLKCRVINLDDAFG 58 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLPGEFQV 312 +E+ + S +++ + + + T ++ +G+ F L G F + Sbjct: 59 RELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHF-LRSSLLGRFNL 117 Query: 313 YNALVAAGLCIAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 N L A G +G+D AL +L+ L KL GR + +G + + VDYAHT Sbjct: 118 SNVLSAVGAL--LGLDYALDEILKVLPKLEGPVGRMQRLGGADK-PLVVVDYAHT 169 >gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 450 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 30/375 (8%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 ++ P + I V++DSR + +G FVA+ G + +G F+P AIAQGA ++V Sbjct: 16 ALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGAGGVLVD---- 71 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 I + P ++V +T L + + +LAVTG+ GK++V + I Sbjct: 72 -------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVKEVLTAILN 124 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +SG + Q+N + P L+ L + V +H + Sbjct: 125 QSG--------PVLATRGNQNNHVGVP------LTLARLGPEHRYAVLEMGMNHPGELTL 170 Query: 199 LDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 L G+ + N H++ + A AK + L I+ DD ++ Sbjct: 171 LSGLARPTLALINNAAPAHLEGLGSVAAIAAAKGEILSG-LDNRGLTILNGDDPFADFWA 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +RA R S+ ++ + + + F PLPG+ N L Sbjct: 230 ERAPGEVWR-FSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPLPGQHNGRNVLA 288 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A +A+ I + + L +PGR ++ + G R+ D Y SLE L+ + Sbjct: 289 ATTAALALDIPIPQIQRAVAGLQTIPGRLQWR-SGPHGSRMLDDTYNANPASLEAALRVL 347 Query: 377 RTITSGRIIVVFGCG 391 RI+V+ G Sbjct: 348 AAQPGQRILVLGDMG 362 >gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652] gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CIAT 652] Length = 470 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 20/334 (5%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 +I ++ P I +S DSR I +G F AI G++ DGH + A+A GA +VV Sbjct: 1 MIAAMAGRPFGALPEGITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVV 60 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S A A R P++VV++ L + I+AVTG+ GK++ + Sbjct: 61 SEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEML 116 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + SG ++++SF +N P + LA+ + + GV V + + G Sbjct: 117 RHVLSPSGKVH------ASVASF--NNHWGVP--LTLAR-MPDDTDYGVFEVGM--NHPG 163 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + + I+ T + H+ ++ + AK +FE L ++ D+ Sbjct: 164 EIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGL-EAGGHVVLNRDNDQF 222 Query: 254 KEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 + + A + G + S G K L + + +++ G+ + PG Sbjct: 223 NFLDRTAQSLGVEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHI 282 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 NAL A G+ +G D + L L GR Sbjct: 283 AENALAALGVVRIVGADLEKAIAALATLKPEKGR 316 >gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 33/330 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D N Sbjct: 27 IQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAIATL-----WMKDVENP-PEN 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V++T L + A + ++ VTG++GK+S V I + F++ Sbjct: 81 LPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDIVTSILA----TKFKVQK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I L+ + V + + SS G + + A Sbjct: 137 TE--GNF--NNHIGLPLTI-----LNLEENTEVAVLEMGMSSRGEIEFLSKLARPNAAII 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+ +++A AK+ + L ++ +Y D N ++ Sbjct: 188 TNIGEAHLMDLGSREAIAEAKLEIVTGL--QKGGVFVYNGDEPLLTNRVPEMNLAAETVT 245 Query: 270 VG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G Y + L + H K + F P+ G+ VYN L + + Sbjct: 246 FGDARANDYYPTTVTL-QATGTHFKMN-----RDETLSFYLPVLGKHNVYNTLASMAIAK 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ + + L L + R E V T+S Sbjct: 300 HFGVTWEEMKQGLVTLQMTGMRMEIVKTDS 329 >gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama I] gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama I] gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS] Length = 468 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 110/265 (41%), Gaps = 47/265 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AV GT GK++ S V + GL +F IG ++S + RL Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARL-------------- 151 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 QG ++ VEA D L+ + ++A TN+ DH+D + A + F + Sbjct: 152 --GQG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQ 205 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293 LP AI+ ADDA +E+M + + G +VCA + ++ Sbjct: 206 RLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPD----AQVCAQDVQADGTRMRF 258 Query: 294 SVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +V+ +D D + P LPG V NAL A + +G+D A + E L V RF Sbjct: 259 TVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRF 318 Query: 347 EFVG----TNSRGGRIYV---DYAH 364 G + GG I+ DY H Sbjct: 319 TQWGDLPVPAAHGGGIFTLVDDYGH 343 >gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate [Corynebacterium glutamicum] Length = 293 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 40/250 (16%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSLQ 80 + V DSR + G +F+A+ G + DGH F AI +GA A+ +V +Q Sbjct: 29 SSVEFDSRSLTPGGLFLALPGARVDGHDFAATAIEKGAVAVLAAREVDVPAIVVPPVKIQ 88 Query: 81 DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + +A I ++ P VV+ + H N++A+TG++GK+S F+ + Sbjct: 89 ESNADIYAHEPDGHGAAVVEALSRLARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATV 148 Query: 137 CQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL----SSQGVTHVSVEASS 191 Q GPT + SF +N L P + YL S++G+ H+ Sbjct: 149 LG-------QDGPTVAPPGSF--NNELGLPHTVRCTTDTKYLVAEMSARGIGHI-----K 194 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYAD 249 H L + R I + N+G H+ +++ AK + E L K++ A++ AD Sbjct: 195 H-LTEIRPPRIAAV----LNVGHAHLGEFGSRENIAQAKGEIIEALPSKKTGGVAVLNAD 249 Query: 250 DAYSKEVMKR 259 D + + R Sbjct: 250 DPFVARMAPR 259 >gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Acinetobacter lwoffii SH145] Length = 467 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 32/344 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + +DSR +AG F+A+ G + D H FI Q AQG E +VS + + Sbjct: 36 QIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQGCEIAIVSR---------PVDA 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + LVV++TR L + ++P+ ++A+TG+SGK++ + I R + Sbjct: 87 DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSR-------L 139 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 PT ++ +N L P + L + + AS G + ++ Sbjct: 140 APT-LVTRGNLNNDLGVPVML-----LELRPEHQYAVMELGASHQGEIDYTSKMVQPHVA 193 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G H+ + AK ++ + +II A D +++ + RA + Sbjct: 194 GIINIGTAHLGEFGGRDGICRAKSEIYAHI---SETSIIPAADDFAEVI--RAAVRTEKS 248 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G G+ ++ V T++ P GE V NA AA +AIGI Sbjct: 249 LSFGAGGE-VYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAFALAIGI 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 ++ LE+ GR F+ +++D + +N M Sbjct: 308 GLDDIVAGLEQAVGAKGRLNFIPHKD---YLFIDDTYNANPGSM 348 >gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC61] gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus sp. Y412MC52] Length = 458 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 31/334 (9%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +W ++ VS+D+R IQAG ++V + G +GH F+ +A +GA A++ + + Sbjct: 21 EWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKGAVAVLWA------ERE 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T P++VVD+T L A+R + ++ VTG++GK++ + + + Sbjct: 75 GTPPEGVPVVVVDDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTKDMIAALLS----T 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ-HRLDG 201 +++ T +N + P L+ LS +G VE G + RL Sbjct: 131 HYRVQKTEG----NLNNHIGVP--------LTLLSLDEGTEMAVVEMGMSGFGEIERLTM 178 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMK 258 I + A TN+G H+ +++ AK+ + L +Y D ++ V K Sbjct: 179 IARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGL--HHDGLFVYHGDEPLLTERVPK 236 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G Q + V ++ G+ P+ G+ VYNAL A Sbjct: 237 LSLPRHVVTFGAGEQNDYYPTDVRIEAGGTSFVINALPGR--TLFMPVLGKHHVYNALAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + GID + L +L V R E V T Sbjct: 295 IAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTK 328 >gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521] gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521] gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 461 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 76/340 (22%), Positives = 125/340 (36%), Gaps = 46/340 (13%) Query: 65 AQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHP 114 A+GAE + + L ++A I S+ P ++ + L + F + H Sbjct: 53 AEGAEIYIGHNKDNIKKDVDLVVYTAAIPSDNPEILAAKDQNILLMDRAEFLGHIMKGHK 112 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171 N+ AV+GT GK++ S + + + L PT + N S +L Sbjct: 113 YNV-AVSGTHGKTTCTSMLSHVTLAANLD-----PTILVGGELDVIGGNFRIGNSEYFLT 166 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y S G N+ DH+D ++ + M Sbjct: 167 EACEYKKS-------------------FLKFPPYVGIILNIDADHLDCYKDINEIADTFM 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F +L+PK+ + Y DD KE++ NA C +S G+ K + Sbjct: 208 A-FSKLIPKDGYLVGYGDDERVKEILS---NAECNTVSYGFNDDSDVTAKNITFNKMGCA 263 Query: 292 TISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + V D F +PG+ V NAL + + + I +E L K RFE+ Sbjct: 264 SFDVYKSDKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKDTVEGLSKCKGAHKRFEY 323 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G G + DYAH ++ L + I ++ VF Sbjct: 324 KG-ELNGVTVIDDYAHHPTEIKATLNTAQKIDHNKVYCVF 362 >gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile 630] gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Clostridium difficile] Length = 457 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 93/434 (21%), Positives = 172/434 (39%), Gaps = 71/434 (16%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 LIY D+ + ++ + I DSR A FVAIVG DGH F+ A Sbjct: 17 LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123 G + + + + ++ S+ I ++D L+L Y K +I + VTG+ Sbjct: 62 SGCKTFIKNESNGIKLESSDIN------LIDVKDTSLALGDISKYYKEKFDIPFIGVTGS 115 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + ++ ++ + L + L L L+ + Sbjct: 116 VGKTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHEC 161 Query: 184 HVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V +E G ++ + +D + +N+G H++ +Q+ AKM + + Sbjct: 162 AV-IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DET 219 Query: 242 SPAIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + I+ DD + + ++ H N V Y + L +C I+ K++ Sbjct: 220 NTLIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE-- 277 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + P GE +YNA+ A GLC+ I +D + + L+ R + + Sbjct: 278 --------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII- 326 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIA 406 N + I Y + +S++ LK I GR + + G G + G R ++GK + Sbjct: 327 KNEKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSS 384 Query: 407 LDLADIAIVTDDNP 420 ++ DI I +N Sbjct: 385 MNNTDIIITIGENS 398 >gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas sp. AL212] Length = 466 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 78/329 (23%), Positives = 143/329 (43%), Gaps = 37/329 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR ++ G +FVA++G + DG F+ A +GA A ++ A + + P+ Sbjct: 25 VSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAE----PAGLSGDFPV 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG-PTS 151 + V ++R L A+ + ++ VTG++GK++ + I + + + I P Sbjct: 81 IRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASDNAIINDPAE 140 Query: 152 TISSFAQ--DNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 + + A +N + P + L + Y + G+ H+ A L + + I Sbjct: 141 RVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLARPNIAVI----- 195 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---------SKEVMK 258 TN G HI+ + +A AK + L + AI ADD Y ++E++ Sbjct: 196 --TNAGAAHIEGLGSVEAVARAKAEILVG-LDQSGTAIFNADDRYASLWRECAGAREIID 252 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 RV +V G+ ++ ++ T+ V+ PG +YNAL A Sbjct: 253 FGLTEKARVSAVYRLGRLVNTLQL----RLPDATVEVK-------LQAPGVHNIYNALAA 301 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 A + ++GI ++ LE+ V GR + Sbjct: 302 AAVAWSLGIKKEWIVAGLERFQSVHGRLQ 330 >gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF, putative [Chlamydia muridarum Nigg] Length = 452 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 13/138 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M ++ ++ K++ L+ + I +K+ V+ DSR + G +F A+ GN+ GHLF+ Sbjct: 1 MVMRPILLKEWSSLLLDIDI---PCSGKKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFL 57 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 QA GA A VV+S Y D+ +L V + R+ L A R G H E ++ Sbjct: 58 KQAAQSGAVAAVVASDYRGPDYGLQ------LLHVADPREALRA-AGRTQGALFHGE-VI 109 Query: 119 AVTGTSGKSSVASFVQQI 136 +TG+ GK++ SF QQ+ Sbjct: 110 GITGSVGKTTTKSFTQQL 127 >gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 454 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI A GA A FS Sbjct: 20 EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + VD+ + AS K +++AVTG++GK++ + + Sbjct: 69 EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 S + T ++ +N + P Y A + + + V + H D H L + Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257 K G T +G H+++ +++ K+++ + + +S I+ A D Y E Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G G I +K + +K+ +T + D P+PG++ NA+V Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFTTNVIDRPITLPVPGKYNATNAMV 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + I ++E LE + + R E+ + G I D Y ++ +IL+ Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339 Query: 377 RTITS---GRIIVVFG 389 I + G+ I V Sbjct: 340 SKIPANEGGKKIAVLA 355 >gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis PHE/MN1-00] Length = 464 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 + P I+ VS DSR I +F+ I GN DGH F+ +A+ +GA AI+ S Sbjct: 17 VAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVEEGASAILASH---- 72 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 F + P+++V +T L + A ++ +TGT+GK++V V Q+ Sbjct: 73 NPFEGEVP--VPVILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTVKELVAQLLTS 130 Query: 140 SG 141 G Sbjct: 131 KG 132 >gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas testosteroni KF-1] gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas testosteroni KF-1] Length = 632 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 141/351 (40%), Gaps = 55/351 (15%) Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153 L LFA L G + +L +TGT+GK++V S Q+ + GLS + IGPT Sbjct: 230 LDLFAFALKGLREAHGYAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPTLLD 289 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 + + + T P L E SS LD R G + A + N+ Sbjct: 290 TLSGRIDAETLPQAWVL-----------------ELSSFQLDDCR--GFEPTAATVLNIT 330 Query: 214 RDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII------YADDAYSKEVMKRAHN- 262 +DH+D+H QAY +AK +F E +L +E P ++ A + +RAH Sbjct: 331 QDHLDWHGGMQAYADAKAHVFGEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVT 390 Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFP-----LPGEFQ 311 G G G + + + + + + +GK+ D L P + G Sbjct: 391 FGGDMPRRPGDFGLEV-VNGMTWLVRAHEADETSKGKNVDDLHIVRLMPADALRIRGRHN 449 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLE 370 NAL A L G A +L L + P R + VG R G + Y D + +N Sbjct: 450 AINALSALALATGAGCTLAPLLYGLREYRGEPHRVQPVG---RVGDVEYFDDSKGTNVGA 506 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + + RI+V+ G G + Q P+ ++ + ++ D P+ Sbjct: 507 TVAALMGLGPDHRIVVILGGLG-KGQDFTPLAAPVSRYVRAAVLIGQDAPQ 556 >gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia xenovorans LB400] Length = 470 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 44/382 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S+DSR G +FVAI G++ D H F+P + A++V+ + QD+ N Sbjct: 26 IERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVT--RTPQDW------N 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L V +TR L A + ++AVTG++GK++V + I + + ++ Sbjct: 78 VPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL-- 135 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 +T +F +N + P ++ A L+ V + + +H + L I + Sbjct: 136 -ATAGNF--NNDIGLPLTLFRLHAAHQLA---VVELGM---NHPGETSELAKIAEPTVAV 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKR 259 N R+H ++ T +A + L P E A+ ADDAY+ +M Sbjct: 187 VNNAQREHQEFMATVEAVALEHASVIHALSP-EGVAVFPADDAYASIWRVAATGNRIMDF 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A N+ R +G F ++I + + G+ +NAL A Sbjct: 246 ALNSAERTTEAAVKGTFA----------GNVLSIDTPAGRLEVTLQVLGDHNAHNALAAT 295 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVDYAHTSN--SLEMILKN 375 +A G+ + LE V GR + S G +D + +N S+ + Sbjct: 296 SAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAIDV 355 Query: 376 IRTITSGRIIVVFGCGGDRDQG 397 + + + R++V+ G D G Sbjct: 356 LASRPAPRVLVMGDMGEVGDNG 377 >gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc argentinum KCTC 3773] Length = 441 Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 165/370 (44%), Gaps = 54/370 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ VS +SR + G +FVA+V + DGH +I A+ +GA A++V + I + Sbjct: 21 QVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAAVLVDDQHD-------IPN 72 Query: 89 NTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P ++V +T L L A R +P+ ++A+TG++GK++ + + +F+ Sbjct: 73 DVPAVIVPDTLVALQQLGAFRRQELNPK-VVAITGSNGKTTTKDMTAAVMAKR-YKTFK- 129 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGI-KLI 205 T +F +N + P ++ L+ T V V G+D+ +L + KL+ Sbjct: 130 ----TPENF--NNEIGVP--------MTLLTMPADTEVLV--VELGMDRPGQLTALSKLV 173 Query: 206 AGS---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 T +G HI++ QT+ AK+ + L P I + + ++ +A Sbjct: 174 VPDVAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLCI-----PFDEPLLTQADV 228 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL--VAAG 320 A Q + V A+ T ++ F PL G + + NAL V+AG Sbjct: 229 A---------QQVVVFGDGVSAVQGDATTTTFTY-QETRFAIPLIGGYNIMNALAAVSAG 278 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + + I +D A +E L+ + R E + T +RG + D Y ++ +L ++ I Sbjct: 279 ILLHIDLDDA--VEALQTFDLTKNRTERLVT-ARGVNLISDVYNSNPTAVAAVLATLKAI 335 Query: 380 TSGRIIVVFG 389 + VV G Sbjct: 336 PAPHKYVVLG 345 >gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus bovis ATCC 700338] Length = 454 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI A GA A FS Sbjct: 20 EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + VD+ + AS K +++AVTG++GK++ + + Sbjct: 69 EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 S + T ++ +N + P Y A + + + V + H D H L + Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257 K G T +G H+++ +++ K+++ + + +S I+ A D Y E Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G G I +K + +K+ +T + D P+PG++ NA+V Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFTTNVIDRPITLPVPGKYNATNAMV 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + I ++E LE + + R E+ + G I D Y ++ +IL+ Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339 Query: 377 RTITS---GRIIVVFG 389 I + G+ I V Sbjct: 340 SKIPANEGGKKIAVLA 355 >gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 450 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 74/357 (20%), Positives = 153/357 (42%), Gaps = 47/357 (13%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + I+A+TG++GK++V S V +C++ GL + G T A+ R + +++ Sbjct: 112 RRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTPVLEAEMQRGGKKAGVWV- 170 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 171 ---------------LELSSFQLEN--TESLRPSAAAVLNISEDHLDRYDDLLDYAHTKD 213 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNK 288 ++F + ++ ADDA + MKRA G + S+ Q + ++ A+ + Sbjct: 214 KIFRGV----GVQVLNADDALCR-AMKRAGR-GVKWFSLEKQADYWLERETGRLKAVSDD 267 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 T + PL G N + A LC A+G+ +++H++ +P R E Sbjct: 268 LMNTTDI---------PLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLPHRVEK 318 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +G + G +++D + +N + I + S ++ G G + Q P+ + Sbjct: 319 IG--EKNGVVFIDDSKGTN-VGATAAAISGLQSPLFAILGGLG--KGQDFTPLAQVLRGK 373 Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + + ++ D P +IR ++ I+ EA++TA D+++++ Sbjct: 374 VKAVLLIGRDAP------QIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDIVLLS 424 >gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis Bt4] Length = 468 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + T N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGVRAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G V + + ++ I D GE NAL A +A G+ Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A V LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 143/360 (39%), Gaps = 68/360 (18%) Query: 82 FSATIRSNTPILV--------VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 F+A I + P LV V +FL + K +N++AV+GT GK++ S + Sbjct: 66 FTAAIPKDNPELVKAKRLGLKVYERAEFLGMLM-----KDYKNVIAVSGTHGKTTTTSMI 120 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 I +++ L+ PT + +F + N S + +A Y+ S + S+ Sbjct: 121 GYILKKALLN-----PTVLVGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFNPSI--- 172 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G N+ DH+DY + ++ ++ R F +P+ + DD Sbjct: 173 ----------------GVILNIDNDHLDYFKDIESIKDS-FRKFALKIPQNGFIVANLDD 215 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPL 306 + V A V+ + K N V KDF L + Sbjct: 216 ---ENVYSVASYLKQNVIYFSTKTKADFWADNITSCN-GYYEFDVVNKDFKHLCHIKLNI 271 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--------GGRI 358 PG VYN+L A + +GID + E + FEF G + R G + Sbjct: 272 PGFHNVYNSLAAFSVAYTLGIDKNTIKEAI---------FEFCGASRRLEKLGKIDGIVL 322 Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTD 417 Y DYAH +E L+ ++ + ++IV+F + K + G + +L LAD IVTD Sbjct: 323 YDDYAHHPTEIEATLRTLKKLAKEKVIVIFQ-PHTFSRLKSLMEGFVKSLSLADKVIVTD 381 >gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Arsenophonus nasoniae] Length = 452 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N V+++SR +F+A+ G DGH F QA GA A++V ++ + Sbjct: 22 LNAVTTNSRQRPIKGLFIALKGKHFDGHHFAEQATIAGASALLVERPLTI---------H 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++V++TR + A+ + + ++ +TG+SGK+SV V I +SG++ F G Sbjct: 73 CPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEG 131 >gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4] gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4] Length = 488 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 136/326 (41%), Gaps = 54/326 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 Q A+ +VVS+A + ++ I +V L R +G +A+ GT G Sbjct: 78 QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ S + + ++G +F IG ++S + RL T S +A+A S+L Q Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V TN+ DH+D + + F LP Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295 A++ DDA +E+M R G +++ G+ V A++ +QQ T+ Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFQQQGHQCRFTVRR 277 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352 +GK D D L LPG+ V NAL A + ID + +++ L + + RF+ +G Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337 Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377 +G + V DY H + + +K R Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108] gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108] Length = 831 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 40/369 (10%) Query: 30 INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA----YSLQDFS 83 I+ + +DSR + +F A+ + DG +IP A+G VVS + +Q FS Sbjct: 24 IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGVRNFVVSKESMKRFDVQPFS 83 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + S LVV N K L A + + ++ +TG++GK+ V ++ Q+ LS Sbjct: 84 GSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVIGITGSNGKTIVKEWLHQL-----LS 138 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++ S S +Q + P ++ S G+ S G + + IK Sbjct: 139 AERVIVRSPRSYNSQ---IGVPLSVWQMNEQS-----GLAIFEAGISEPGEMRALQNIIK 190 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY-SKEVMKRA 260 G TN+G H Q+ +F+ + + E+L L K +IY DD + S V K Sbjct: 191 PTIGILTNIGGAH------QENFFSLQEKCMEKLALFKNCDVVIYNGDDEFISNCVAKSM 244 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP--GEFQVYNALV 317 +A S + +++ KV K T IS D D F LP + V N+L Sbjct: 245 LSAREIAWSRKDMERPLYIGKV---EKKDDCTVISYRYLDMDNTFTLPFIDDASVENSLN 301 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKN 375 C+ + + + + E + +L V R E + G + ++ ++ S+ SL++ L Sbjct: 302 CLAACLYLMLPAEKITERMGRLEPVAMRLEV--KEGKNGCVLINDSYNSDLGSLDIALNF 359 Query: 376 I--RTITSG 382 + R++++G Sbjct: 360 LYRRSLSNG 368 >gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4] Length = 472 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 16/188 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D+H T +AY +++F + + + P I+ ADD + + + A AG R Sbjct: 189 TNVEPDHLDHHGTAEAY----VKVFSDFVGQIEPGGLLIVCADDEGAARLGEEAAAAGVR 244 Query: 267 VLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V G + + + V I+++G++ D +PGE NA+ A + Sbjct: 245 VRRYGRAASGEGDVRVLDYTPAPDGGVVRIALDGEEHDLRVAVPGEHMALNAVAALLAGL 304 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTIT- 380 +G + L V RFEF G R G R+Y DYAH + L+ +RT Sbjct: 305 ELGAPLDGMAAGLAAFGGVRRRFEFKG---RAGDVRVYDDYAHHPTEVAAQLRAVRTAAG 361 Query: 381 SGRIIVVF 388 +GR++VVF Sbjct: 362 NGRVVVVF 369 >gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17] gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17] Length = 471 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 42/287 (14%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGASDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFDRVKDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKV-------C 283 E +P A++ D + ++ R + RV++ G+ + +++ + Sbjct: 206 VENVPFYGAALLCLDHPEVQNILPRVRDR--RVVTYGFSAQADVRGVNVTPIPGGNRFEA 263 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 I ++ + S+EG + P+PG V NAL A G+ + +GID A + + + V Sbjct: 264 IIRHRDGSSRSIEGIEL----PMPGRHNVQNALAAIGVALELGIDDATIQQGFGQFGGVK 319 Query: 344 GRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387 RF VG + G + DY H + +L R GR+I V Sbjct: 320 RRFTKVGEIAVDGGVATVIDDYGHHPVEIRAVLAAAREGARGRVIAV 366 >gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp. HTCC2649] Length = 476 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 77/363 (21%), Positives = 146/363 (40%), Gaps = 47/363 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR + G ++VA +G DGH F+ A +GA A + S P Sbjct: 33 VVTDSREAEPGSLYVARIGESMDGHQFVGAARDKGAVAALTSRPV----------DELPC 82 Query: 93 LVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSS 144 +VVD+ + F+++ + L ++ +TG+SGK+S + + + G + Sbjct: 83 VVVDDVQAAFVAISRAVLERATDLTVIGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYN 142 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++G T++ D R + + ++G+ H++ R+ ++ Sbjct: 143 SEVGVPLTVTRVTADTRFL----------VVEMGARGIGHINY--------LTRIAPPQI 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G N+G H+ +++A AK L E LP + A++ ADD + + R Sbjct: 185 --GVVLNVGTAHVGEFGSREAIARAKAELVEA-LPSDGVAVLNADDPVVRAMADRTS--- 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 RV+ VG + + + + + T ++ L G V NAL + Sbjct: 239 ARVVLVGEAAEAAVRAEDVTVGSDGRATFRVTTPAGGATIALRLVGRHHVGNALAVLAVA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT 380 + GI + + +V R+ T G V+ A+ +N S+ L + ++ Sbjct: 299 LECGIPLDTATTSIAEAGIV-SRWRMEVTERPDGVTVVNDAYNANPDSMRAALSALESMG 357 Query: 381 SGR 383 GR Sbjct: 358 EGR 360 >gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius ED99] Length = 449 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 43/285 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 I+ +TGT+GK++V S + + +S G S IG + S AQ+ + YL Sbjct: 113 IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVA--SKVAQE----VKTDEYLVTE 166 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 LS G+ +H I +I TNL H+DYH+ + Y NAK R+ Sbjct: 167 LSSFQLLGI-------------EHYRPHIAII----TNLYSAHLDYHENLENYQNAKKRI 209 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 FE ES +I+ +D + A S ++ I+++K ++N ++ I Sbjct: 210 FEN--QTESDYLIF-NDKQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL-I 265 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ LPGE + N L A I G+ + +++ L + R +++G N+ Sbjct: 266 HLDD------IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIG-NN 318 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397 + + Y D + +N+L ++S + V++ CGG DR G Sbjct: 319 KTNKYYND-SKATNTLATQF----ALSSFKQPVIWLCGGLDRGNG 358 >gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter felis ATCC 49179] gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--ligase [Helicobacter felis ATCC 49179] Length = 486 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 50/332 (15%) Query: 99 RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 R ++ L +++ G ILA+TG+ GK+SV +++ QI Q + +G T+T+ +Q Sbjct: 145 RGYVQLAKNKILGMKNLKILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQ 204 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217 D P L Y++ G + A S L+ H T +G HI Sbjct: 205 DINQNLPENTTL-----YIAEAGARQPGDIAAISQLLNHHY--------AVITEVGAQHI 251 Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 +Y +T K L E + A + ++A + + ++ Y G+ Sbjct: 252 EYFKTLDNVIKTKAELLES--SRLEHAFCHHNEALEELISQKDK-------ITFYPGQV- 301 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGID 328 ++V ++EG F+ L + G F V N +A + GI Sbjct: 302 -----------RRVQATLEGTSFELLLGEQWARFESKILGAFNVENITLAVMVGFYFGIP 350 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIV 386 + + KL+ VP R + + N ++ +D N L+ +L+ +R ++ GR I+ Sbjct: 351 IDQLQRSVAKLNPVPHRLQVLHLND---KVIIDDGFNGN-LKGMLEAVRLSSLYVGRKII 406 Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 V + D+ +GK + DIAI+T + Sbjct: 407 VTPGLVESDEESNTTLGKAIDQVFDIAILTGE 438 >gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis C-1013-b] Length = 464 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 80/374 (21%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KIN VS +S+ + IFVAI G G+ F+ +A+ +GA A+ S A + + A Sbjct: 20 KINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEKYA---- 71 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-------SG 141 V ++ +FL FA ++ +TG++GK++V + + + G Sbjct: 72 -ERAFFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEG 130 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG T+ +D+ I L +S + L Q L Sbjct: 131 NYNNHIGLPFTLLRAEKDDDF-----IILEMGMSDFGEIDL-----------LGQIALPD 174 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-ESPAIIYADDAYSKEVMKRA 260 I +I TN+G H+++ +T++ F AK E++P +S +I DD Y K V +A Sbjct: 175 INVI----TNIGESHLEFLKTKENVFLAKT----EIIPHIKSTLVINGDDKYLKNV--KA 224 Query: 261 HNAG-CRVLSV---GYQGKF-------IHLK------------KVCAIHNKQQVTISVEG 297 N R L++ Y+ K IH K+C Q T+ Sbjct: 225 ENIEIVRALNLRNNEYEDKTSDFYYGDIHFDESGTNFFLKYFGKMC------QSTVERNY 278 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 K + GE V N ++A + G++ ++ E ++ + + RF+ + G Sbjct: 279 KT-----NVLGEHNVLNLVMAIAVAKQFGMEDKIISEAVKNIELTGMRFQII---ENGNT 330 Query: 358 IYVDYAHTSNSLEM 371 Y++ A+ ++ + M Sbjct: 331 TYINDAYNASPMSM 344 >gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius HKU10-03] gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus pseudintermedius HKU10-03] Length = 449 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/285 (25%), Positives = 127/285 (44%), Gaps = 43/285 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 I+ +TGT+GK++V S + + +S G S IG + S AQ+ + YL Sbjct: 113 IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVA--SKVAQE----VKTDEYLVTE 166 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 LS G+ +H I +I TNL H+DYH+ + Y NAK R+ Sbjct: 167 LSSFQLLGI-------------EHYRPHIAII----TNLYSAHLDYHENLENYQNAKKRI 209 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 FE ES +I+ +D + A S ++ I+++K ++N ++ I Sbjct: 210 FEN--QTESDYLIF-NDKQRHLIDTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRL-I 265 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++ LPGE + N L A I G+ + +++ L + R +++G N+ Sbjct: 266 HLDD------IVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIG-NN 318 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397 + + Y D + +N+L ++S + V++ CGG DR G Sbjct: 319 KTNKYYND-SKATNTLATQF----ALSSFKQPVIWLCGGLDRGNG 358 >gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sphingomonas sp. SKA58] Length = 463 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 167/396 (42%), Gaps = 40/396 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA+ G DGH F+ QA AQGA +VS A + Sbjct: 24 VSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQAFAQGAAGAIVSDAV----------DH 73 Query: 90 TPILVVDNTRKFLSL-FAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 I V D+ +L AS R+ GK ++ VTG+ GK+ + R+ Sbjct: 74 PHIRVADSAAALQALGIASRRRMGGK----VIGVTGSVGKTGTKEALYLALDRAAPGQAH 129 Query: 147 IGPTSTISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVS-VEASSHGLDQHRLDGIK 203 ++ S+ +N + P S + + +Y + G+ H + A +H + H Sbjct: 130 ----RSVKSY--NNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSALTHQVRPH------ 177 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A T + HI++ T+ AK +FE L P + AII D + + +A Sbjct: 178 --AAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAA-AIIPYDSPHVATLYNKAERH 234 Query: 264 GCRVLSVGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R+L+ G Q L+ V A + VT + + F PG+ V NAL Sbjct: 235 AARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALAVLAA 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM--ILKNIRT 378 A+G D A L ++ +PGR E GG + +D ++ +N L M LK + Sbjct: 295 VEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAATLKQLGR 354 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + R I V G + + +A LAD AI Sbjct: 355 EHADRRIAVLGGMRELGSASADLHAGLAKPLADGAI 390 >gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 80/362 (22%), Positives = 150/362 (41%), Gaps = 49/362 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G E ++ ++A S +D I + L + +FL L K+ +N++A++GT G Sbjct: 59 HGDETVIYTAAIS-KDNPELIAAKRMNLKIYERAEFLGLLM-----KNFKNVIAISGTHG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182 K++ S + I +++ + PT + +F + N + + +A Y+ S Sbjct: 113 KTTTTSMIGYILKKACYN-----PTILVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++ G N+ DH+DY + + N+ + F + +P Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD K+V+ + H +S + C N V+ + + Sbjct: 208 FLVANCDDKNVKDVISKLHTQ-VVCISTKEKADIFAGNISC---NDGYYEFDVKNNNDEI 263 Query: 303 L----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGR 357 L +PG VYNAL A + +G++S L +EH L + R E VG G Sbjct: 264 LAHIKLNIPGFHNVYNALAAFAVTSKLGVES-LTIEHALSEFCGASRRLEKVG-EFDGIY 321 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415 ++ DYAH ++ L ++ ++ G++ +F + ++ + A L LAD IV Sbjct: 322 LFDDYAHHPTEIKATLATLKKLSEGKVFAIF--QPHTFSRLKSLLNEFAESLKLADKVIV 379 Query: 416 TD 417 TD Sbjct: 380 TD 381 >gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis TXDOH] Length = 468 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + T N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGERAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRLVD 244 Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G V + + ++ I D GE NAL A +A G+ Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A V LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium BBFL7] Length = 417 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 157/361 (43%), Gaps = 45/361 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I+ G +F A+ G DG+ ++ QA+ +GA VSS + ++N + Sbjct: 14 VQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGA-IHAVSSDHKW-------KNNPSV 65 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 VV++ K L A+ I+++TG++GK++ + + + Q T Sbjct: 66 TVVEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQ------QFNVKGT 119 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-AGSFTN 211 + + +N + P I LS+ S + V + A +H + +L I L G TN Sbjct: 120 LGNL--NNHIGVPLTI-----LSFDKSTEIGVVEMGA-NHLKEIEKLSTIALPDYGLITN 171 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G+ H++ +++ K LFE L AI+ + +E +KR+ Sbjct: 172 YGKAHLEGFGSEKNIIIGKSELFEHLKAHGKTAIV---GHWDQEQLKRS----------- 217 Query: 272 YQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 QG +FI I + +++ EG+ D L GE+ +N L+AA + + + Sbjct: 218 -QGIERFITSTDSKLIKAEPYISLEFEGQKSD--TQLIGEYNYHNMLLAAAVGQIFNMST 274 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVF 388 +L L + R + + +++ +I +D Y +S+ + L N+ I V Sbjct: 275 TSILNGLSQYTPNNNRSQIIQSDNV--KIILDAYNANPSSMSVALSNLSKQKESHKIAVL 332 Query: 389 G 389 G Sbjct: 333 G 333 >gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 445 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ +DD + + MKRA + S+ + F ++ + + Sbjct: 209 KIFR----GDGVQVLNSDDVFCR-AMKRAGRE-VKWFSLEQEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ ++EH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis BCM-HMP0060] Length = 454 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 54/343 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + T + L + S L + P Sbjct: 59 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEATNRGLKILTEVELSYLISEAP- 117 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 172 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G+ E H I +I TN+ H+DYH+T + Y NAK +++ Sbjct: 173 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 215 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292 + + Y Y + + + N + Q + I++K + N ++ Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 269 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + KD LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 270 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 324 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360 >gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia oklahomensis C6786] Length = 468 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 150/372 (40%), Gaps = 30/372 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + + + +T Sbjct: 81 LKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFAAAAGADAR---LAT 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +F +N + P + A L+ G+ H + L + + L+ Sbjct: 138 AGNF--NNDIGLPLTLLRLTAAHRLAVVELGMNH---PGETETLARIAAPTVALV----N 188 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 189 NAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAS--IWRVAATGNRIVDF 245 Query: 271 GYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G V + ++ I D GE NAL + A G+ Sbjct: 246 ALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNALASTAAAFAAGVPL 305 Query: 330 ALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385 A + + LE V GR + S G +D + +N S+ + + ++ R++ Sbjct: 306 AAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365 Query: 386 VVFGCGGDRDQG 397 V+ G D+G Sbjct: 366 VIGEMGEVGDEG 377 >gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerolinea thermophila UNI-1] Length = 477 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 104/479 (21%), Positives = 183/479 (38%), Gaps = 86/479 (17%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA----TI 86 +E + DSR + G +FVA+ G + DGH F+ A GA +V QDF + Sbjct: 25 SEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQNGAILALVEKDLP-QDFPTLDLRAV 83 Query: 87 RSNTPI-------------LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 TP+ L V+NT + L A + ++ +TG+ GKS+ + Sbjct: 84 SPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWRRRLNIRVIGITGSVGKSTTKELI 143 Query: 134 QQI-------CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHV 185 ++ + G + +IG T+ + + R Y+ ++ L V Sbjct: 144 AEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERAVLEMGFYVPGEIALLCDIAQPQV 203 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 G TN+G H + +Q+A K L + LP AI Sbjct: 204 ---------------------GVITNIGTVHAERAGSQEAIARGKSELVQA-LPVGGYAI 241 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------- 297 + DD + + + A ++L G L + + T+ +EG Sbjct: 242 LNHDDPWVRWM---ADKTQAQILYYG-------LTPEAHLWADEIETMGLEGIRFRLHYR 291 Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + F PL G V AL A + I G+ ++ L++ P + V S G Sbjct: 292 RESFSVRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR---SPTQLRLVAVRSSSG 348 Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411 + +D + + S E L +++ + GR I V G G +Q +G A ++AD Sbjct: 349 ALILDDTYNA-SPESTLASLQILHEMKGRRIAVLGDMLELGPYEQSGHEKVGVRAAEVAD 407 Query: 412 IAIVTDDN----PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 + + + R+ ++ E I +P + IE +R +L + DV+++ G Sbjct: 408 VLVAVGELSKIIARAAREAGMKPEKIFWVP---DTSQAIEVLRP---LLKEGDVVLIKG 460 >gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-63q42] gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile ATCC 43255] Length = 457 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 91/432 (21%), Positives = 170/432 (39%), Gaps = 67/432 (15%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 LIY D+ + ++ + I DSR A FVAIVG DGH F+ A Sbjct: 17 LIYGDYNDCVSDIVI---------------DSREANAQNAFVAIVGENLDGHTFMKSAYD 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G + + + + ++ S+ I ++ V +T L + K + VTG+ G Sbjct: 62 SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVG 117 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + ++ ++ + L + L L L+ + V Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHECAV 163 Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E G ++ + +D + +N+G H++ +Q+ AKM + + + Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DETNT 221 Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 I+ DD + + ++ H N V Y + L +C I+ K++ Sbjct: 222 LIVNGDDKFLSTLKEKEHAYKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKE---- 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P GE +YNA+ A GLC+ I +D + + L+ R + + N Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408 + I Y + +S++ LK I GR + + G G + G R ++GK +++ Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386 Query: 409 LADIAIVTDDNP 420 DI I +N Sbjct: 387 NTDIIITIGENS 398 >gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 85/370 (22%), Positives = 154/370 (41%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + ++ DSR I+ G +F+ + G + DGH FI A GA A FS Sbjct: 26 LRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FSEREVEG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++VD+ + AS K +++AVTG++GK++ + + S + Sbjct: 75 HPYILVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------STEYKT 128 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 T ++ +N + P Y A + + + V + H D H L + K G Sbjct: 129 YKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELAKPHIGV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263 T +G H+++ +++ K+++ + + +S I+ A D Y E Sbjct: 181 VTLIGEAHLEFFGSREKIAKGKLQIVDGM---DSDGILIAPVDSIVDPYLPE-------- 229 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G I +K + +K +T + D P+PG++ NA+VAA + Sbjct: 230 SQMVIRFG-DGAEIFVKDLQ--ESKDSLTFTTNVIDRPITLPVPGKYNATNAMVAAYVGK 286 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS- 381 + I ++E LE + + R E+ + G I D Y ++ +IL+ I + Sbjct: 287 LLAISDDDIVEALENIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETFSKIPAN 345 Query: 382 --GRIIVVFG 389 G+ I V Sbjct: 346 EGGKKIAVLA 355 >gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis ATCC 12228] gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis SK135] gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis ATCC 12228] gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis SK135] gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU028] Length = 449 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 54/343 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + T + L + S L + P Sbjct: 54 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEATNRGLKILTEVELSYLISEAP- 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G+ E H I +I TN+ H+DYH+T + Y NAK +++ Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292 + + Y Y + + + N + Q + I++K + N ++ Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + KD LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355 >gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 12P80B1] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas mediterranea MMB-1] Length = 452 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 88/388 (22%), Positives = 156/388 (40%), Gaps = 45/388 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATIRSN 89 +VS+DSR + +F+A+ G K +GH F+ +AI QGA ++ V S SL+ Sbjct: 27 DVSTDSRDDLSNKLFLALRGEKFNGHSFVDKAIDQGASGVLVDVDSGVSLE--------- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SS 144 P +VV NT A L + ++TG++GK+SV ++ Q + G S+ Sbjct: 78 -PRIVVHNTLLAYHDIARFLRDAFQGRVFSITGSNGKTSVKDWLAQSLEDFGCVLKTQSN 136 Query: 145 F--QIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 F IG T+ +++ + +S LS V + ++ G Sbjct: 137 FNNHIGVPKTLIQIENNHQFAVVEAGTSFPGEISILSKTIHADVVIVTNASGSHLEGFGS 196 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 K IA +L T + ++ + F++ + + + +S + + Sbjct: 197 TKAIAEEKGDL--------ITYSSLYSKVILNFDDPFFEYWKGLTGKREFFSFSLSDASA 248 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + L +G + C +H + Q ++ P PG+ QVYNAL G Sbjct: 249 DLYVSDLDLGAS------ESSCIVHFRDQSSLVT--------IPAPGKHQVYNALAVIGA 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM---ILKNIRT 378 + + + L + K V GR EF T + I Y + S+E +L + Sbjct: 295 LMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCYNASPTSVEAAIDVLSMQKP 354 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 I ++ G GD+++ +GK A Sbjct: 355 IKKWLVLGALGELGDQEESIHRGLGKYA 382 >gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 144 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 15/130 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 24 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 75 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 130 Query: 150 TSTISSFAQD 159 T S+F D Sbjct: 131 --TASNFNND 138 >gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 463 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 78/331 (23%), Positives = 136/331 (41%), Gaps = 47/331 (14%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+ +V S+A + I V+ + L R+ +AVTG G Sbjct: 62 EGADIVVHSTAVKQDNVELQAARALNIPVIHRSEMLARLMDDRVG-------IAVTGAHG 114 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S + +++GL +F +G + + DN P +A+A Sbjct: 115 KTTTTSMIAFAMEQNGLDPTFIVG---GVVADLGDNAKAGKGPFVVAEA----------- 160 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKE 241 S G H I ++ TN+ DH++++ + F +R +E + P E Sbjct: 161 ----DESDGSFLHYRPAIAVV----TNVEPDHLEHYDGK---FENLVRAYETFIRQIPSE 209 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDF 300 ++ ADD +E+ A CRV++ G+ + I + V + + V GK Sbjct: 210 GLLVMSADDDKLRELRSAAR---CRVVTYGFAEDADITARHVELGDRASRSDVLVNGKFV 266 Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 L LPG+ V NAL A +C+ +G+ L + H RF+ V + G + Sbjct: 267 GTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVV---AEVGDVL 323 Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388 + DYAH + + ++ T RI+ VF Sbjct: 324 IVDDYAHHPTEIRATIAAAKS-TGRRIVAVF 353 >gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CNPAF512] Length = 479 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 20/335 (5%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 ++I ++ P I +S DSR I +G F AI G++ DGH + A+A GA +V Sbjct: 9 DMIAAMAGRPFGALPEGITGISIDSRSIASGEAFFAIKGDRVDGHDYASMAMANGASLLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VV++ L + I+AVTG+ GK++ Sbjct: 69 VSEAR----LPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + SG ++++SF +N P+ LA+ + + GV V + + Sbjct: 125 LRHVLSPSGKVH------ASVASF--NNHWGV--PLTLAR-MPDDTDYGVFEVGM--NHP 171 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 G + + I+ T + H+ ++ + AK +FE L ++ D+ Sbjct: 172 GEIRPLVAMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEG-LEAGGHVVLNRDNDQ 230 Query: 253 SKEVMKRAHNAGCR-VLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + A + G + S G K L + + +++ G+ + PG Sbjct: 231 FNFLDRTAQSLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRH 290 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 NAL A G+ +G D + L L GR Sbjct: 291 IAENALAALGVVRIVGADLEKAIAALATLKPEKGR 325 >gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis RH4] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora acidiphila DSM 44928] Length = 528 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 153/374 (40%), Gaps = 52/374 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR AG +FVA G DGH F+ A+ +GA A++ + + + T R + P + V Sbjct: 41 DSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVLAAPDDAYRK-PWTARGSVPTVTV 99 Query: 96 DNTR--KFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 + + LS A+ + P ++ +TG++GK++ + ++ + ++GPT + Sbjct: 100 GDGDLLRALSALATAHLARLPRTTVIGLTGSAGKTTTKDLIGRLTR-------ELGPTVA 152 Query: 152 TISSFAQDNRLTTPSPI--------YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 SF +N L P + YL ++ + ++G+ H+ +H Sbjct: 153 PKGSF--NNELGFPITVLRTDEDTRYL---VAEMGARGIGHI----------KHLTTIAP 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEV 256 G N+G H+ + +A AK L + ++ AI+ ADDA + + Sbjct: 198 PRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDGVAILNADDARVRGM 257 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEF 310 R RV+ G + + + + + ++ +D + L GE Sbjct: 258 AARTKG---RVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHRYPVALRLVGEH 314 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 QV NAL AA + +G+ V E L +G ++ G + D Y S+ Sbjct: 315 QVSNALAAAATGLELGLAGEKVAEVLSAAEPDSKWRMAIGESADGVTVLNDAYNANPESM 374 Query: 370 EMILKNIRTITSGR 383 LK + T+ R Sbjct: 375 RAALKTLATMARAR 388 >gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobaculum parvum NCIB 8327] Length = 477 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 33/255 (12%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 LIY DF ++ + R + ++ V DSR + G +FVA+ G + DGH F+ Sbjct: 5 LIYSDFNR-AGRIEASDVDERYQLVDPVVVIDSRKVVEGAVFVALPGERTDGHRFVGAVF 63 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A GA VVSS + Q S LV D+ A+ + ++ + G++ Sbjct: 64 ANGASWAVVSSEWFSQHGSEHRGEGRRFLVADDPVAAFQQLATAYRERFDIPVIGIGGSN 123 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGV 182 GK++ V + ++F++ ++ +N L P ++ + + ++ G+ Sbjct: 124 GKTTTKEMVAAVLS----TAFKV----RVTQGNYNNHLGVPLTLFQLRRDTEMAVIEMGI 175 Query: 183 TH-------VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 H S+ +HGL TN+G +H+++ + A+ LF+ Sbjct: 176 NHPGEMAFLASIARPTHGL--------------LTNIGHEHLEFFGSLDGVAKAEAELFD 221 Query: 236 ELLPKESPAIIYADD 250 L A + DD Sbjct: 222 YLEVSGGTAFVNLDD 236 >gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 46P47B1] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Treponema brennaborense DSM 12168] Length = 488 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 94/375 (25%), Positives = 148/375 (39%), Gaps = 52/375 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV--VSSAYSLQDFSATIRSNT 90 V++DSR + G +FV +VG +DGH +I QA+ QGA + + S L N Sbjct: 45 VTTDSRTVTDGSLFVPLVGETQDGHKYILQALEQGARVVFADLESYECLAGLFMDFLENY 104 Query: 91 P---ILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P +VV NT L A+ K P+ I + +TG+SGK++ + + R Sbjct: 105 PDAVFIVVKNTLTALQCAAAAYVKKFPDLIKIGITGSSGKTTTKELIAAVLSRK------ 158 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T ++ ++ P ++ +A H E + +R I +A Sbjct: 159 --YTVVMNEGNLNSETGLPLSVFKIRA---------EH---EVGIFEMGMNRKGEIAELA 204 Query: 207 GSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 TN+G HI ++ A K ++F + A I A D Y+ + Sbjct: 205 NVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSR-FTADCVAFIPAADPYADFL--- 260 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A N G V+ G ++ V I N + L PLPG +AL AA Sbjct: 261 AENCGGTVVRYG-----VNTDPVSRIKNAGLAGTEFLYRQVPILLPLPGAGNFSDALAAA 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI 376 L +G + + LE + + GR + + GG + V Y +S+E L Sbjct: 316 SLASYMGFGADDIKAGLESVRPLFGRSQII-----GGPVSVVQDCYNANPDSMEQALDFF 370 Query: 377 RT--ITSGRIIVVFG 389 + I GR I V G Sbjct: 371 ASLDIEPGRKIAVLG 385 >gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 103P14B1] gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis O35E] gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 101P30B1] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. SK209-2-6] Length = 466 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 55/407 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +S D+R ++AG +FVA+ + DGH F+ QA+ +GA A +V+ + D + Sbjct: 23 QVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQALEKGAGAALVT--HRPDD----VAE 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+L+V++ + L + ++AVTG+ GK+S + + G + + Sbjct: 76 DAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKTSTKEMLATMLADQGRTHAAVA 135 Query: 149 PTST----ISSFAQDNRLTTPSPIYLA----KALSYLSSQGVTHVSVEASSHGLDQHRLD 200 + + A+ R T + I + ++ L+ Q HV++ Sbjct: 136 SYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLARQARPHVAM------------- 182 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 T + H++ K + E L P A++ D A ++ + + A Sbjct: 183 --------VTTVAAVHLEAFDDVAGIAREKAAIMEGLEPG-GVAVLNGDIAEAQVLKEEA 233 Query: 261 HNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G + L G G+ L ++ H QV I +GK + G NAL Sbjct: 234 ERLGVQHLWFGESGQGYRLLETRLEGEHTLAQVEI--DGKPLELRIQSLGAHFAMNAL-G 290 Query: 319 AGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM----- 371 A +C+A +G D+ + L V GR V GG+I + D ++ +N M Sbjct: 291 ALVCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALE 350 Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTD 417 +L GR I G D G+ P ++ +AD+ V+D Sbjct: 351 VLAATPNPEKGRKIAYLG-----DMGELGPKEAELHRGMADLKAVSD 392 >gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis 7169] gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC1] Length = 494 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis M01-240355] Length = 445 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/256 (21%), Positives = 113/256 (44%), Gaps = 32/256 (12%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLEN--TESLRPTAATVLNISEDHLDRYDDLLDYAHTKD 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 ++F + ++ ADD + MKRA + S+ ++ F ++ + + Sbjct: 209 KIFR----GDGVQVLNADDTFCC-AMKRAGRE-VKWFSLEHEADFWLERETGRLKQGNED 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I+ + PL G N + A LC A+G+ +LEH++ +P R E +G Sbjct: 263 LIATQD------IPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRVEKIG- 315 Query: 352 NSRGGRIYVDYAHTSN 367 + G +++D + +N Sbjct: 316 -EKNGVVFIDDSKGTN 330 >gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium pseudotuberculosis C231] gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium pseudotuberculosis I19] Length = 485 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 19/197 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ ++++AYF + + L+P S ++ DD ++ + ++ H + Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVS-LVVCLDDPHTAMLGQKIHEKHKDIKV 247 Query: 270 VGY-----QGKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 VGY ++ + K H+ TI V G++ + + PG V NA A Sbjct: 248 VGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAAL 307 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMILKN 375 + G D + + V RFE+ G + G +Y DYAH + +L Sbjct: 308 TAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTA 367 Query: 376 IRTIT----SGRIIVVF 388 R GR++V+F Sbjct: 368 ARAKLQARGQGRLLVIF 384 >gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis BC8] Length = 496 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPT 150 QI PT Sbjct: 132 S-------QIAPT 137 >gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium sp. SKA34] Length = 460 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 77/329 (23%), Positives = 130/329 (39%), Gaps = 26/329 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R+I + +F+A+ G + D H F A GA+A++VS ++ Sbjct: 24 IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKPLPVE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P LVV +TR L + + L + E LA+TG+ GK++V I G Sbjct: 75 LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTVKEMSAAILANKG---- 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 Q+ +T +F D +P+ L L + + A+ + + +K Sbjct: 131 QV--LATAGNFNND----IGAPLTL---LRLTPEYQYAVIELGANHQNEIFYTTNLVKPN 181 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 N+ H++ + Q AK +FE L+ + I + + + A + Sbjct: 182 VALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEHQVL 241 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + +Q + K T+ D L G V NAL AA L +++ Sbjct: 242 TFSTDSHQADYFAEKIKITTQGLACFTMCTPIGKIDINLALAGMHNVSNALAAAALTVSL 301 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G A V LE + V GR + +R Sbjct: 302 GATLADVKAGLETMANVKGRLDITEPYAR 330 >gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [marine bacterium HP15] Length = 462 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 29/321 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R ++ G +FVA+ G DGH F+ QA+ +GA +VV + D + + P Sbjct: 31 VSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDT----PDTNLAL----PQ 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV+ T + L+ A+ + ILA+TG+SGK++V I + G T Sbjct: 83 LVVNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMG---------KT 133 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +S+ +N + P ++ LS GV + + AS G H + K TN Sbjct: 134 LSTKGNLNNHIGVPLTLF---GLSPEHQYGV--IELGASGLGEIAHTVALAKPRVAILTN 188 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G H++ + + AK + + + + ++ DD + RA RV V Sbjct: 189 AGEAHLEGFGSYENIVLAKGEIIDG-VASDGLMVLNGDDPAFAQWRSRA--GARRVAGVS 245 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G V + T V G D L G+ + N L+A +G Sbjct: 246 RLGAEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLAIAATRELGAS 305 Query: 329 SALVLEHLEKLHVVPGRFEFV 349 ++ L + V GR + + Sbjct: 306 DQAIVAGLASVAPVKGRLQVL 326 >gi|240147080|ref|ZP_04745681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] gi|257200757|gb|EEU99041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase [Roseburia intestinalis L1-82] Length = 100 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 4/73 (5%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457 MG+ A LAD I+T DNPR EDPE I +I GI G +I +R A+ A + Sbjct: 1 MGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAR 60 Query: 458 KQDVLVVAGKGHE 470 + D++V+AGKGHE Sbjct: 61 EGDIIVLAGKGHE 73 >gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis E264] Length = 468 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + T N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS--------TGEWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGVRAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETDALAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G V + + ++ I D GE NAL A +A G+ Sbjct: 245 FALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A V LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. H160] Length = 470 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 46/384 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + VS+DSR G +F+AI G++ D H F+PQ + A++V A + +++ Sbjct: 25 RFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLV--ARTPENW------ 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 N P + V +TR L A + ++AVTG++GK++V + I + + ++ Sbjct: 77 NVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL- 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 +T +F +N + P ++ A L+ G+ H + L + + ++ Sbjct: 136 --ATAGNF--NNDIGLPLTLFRLHAAHRLAVVELGMNH---PGETELLAKLAEPTVAVV- 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVM 257 N R+H ++ T +A + L P+ + A+ ADDAY+ ++ Sbjct: 188 ---NNAQREHQEFMATVEAVALEHASVIHALSPQGT-AVFPADDAYASIWRVAATGNRII 243 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A N+ R +G F + ++++I D + G +NAL Sbjct: 244 DFALNSAERTTEAAVKGTF----------DGKRLSIDTPQGRVDVTLQVLGNHNAHNALA 293 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMIL 373 A +A G+ + LE V GR + + G +D + +N S+ + Sbjct: 294 ATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAI 353 Query: 374 KNIRTITSGRIIVVFGCGGDRDQG 397 + + S R++V+ G D G Sbjct: 354 DVLASRASPRVLVMGDMGEVGDNG 377 >gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha proteobacterium HTCC2255] gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha proteobacterium HTCC2255] Length = 468 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 41/288 (14%) Query: 93 LVVDN-TRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VVDN F FA++ + ++ VTG++GKS+ + + + + S Sbjct: 95 VVVDNDVGLFFRSFATQEWDNFDVMPKVICVTGSNGKSTTTALIAHLLEGS--------- 145 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 NR + L +Q T V +E SS+ +D R + F Sbjct: 146 ----------NRKVVVAGNIGRGVLDIPPAQDGTIVVLELSSYQIDLAR--ALAPDIAVF 193 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCR 266 NL DH+D H YF AK RLF + P AII D+ + + +++ +G Sbjct: 194 INLSPDHLDRHNGMGGYFYAKRRLFIDGNPDR--AIIGVDEIEGQFLENQLRQDAKSGEP 251 Query: 267 VLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V+SV K K A K + S+ D + LPGE NA A Sbjct: 252 VISVSVNSKLQNNGWSVFSRKGFLAEWRKGRQVASI---DLRSMSGLPGEHNHQNACCAY 308 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +C +IG+ L+ E L + R + VGT + G +YV+ + +N Sbjct: 309 AVCRSIGLAPKLIEEKLNSYVGLTHRCQTVGTFN--GVMYVNDSKATN 354 >gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM 17244] Length = 457 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/346 (21%), Positives = 136/346 (39%), Gaps = 30/346 (8%) Query: 23 MQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 ++W +E +++ V DSR + +F A+ G + +GH F A GA A+VV D Sbjct: 18 IRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVVVKREIEGAD 77 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + V++T K L A + +A+TG++GK++ + + Sbjct: 78 CFQ--------IKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASVLSK-- 127 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + TI +F TT P+ L + + V + + G + + Sbjct: 128 ----KYKTMKTIGNFNS----TTGVPLTL---FNLEQGDEIAVVEMGMNHKGEIEKISEL 176 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ TN+G HI+ +++ F AK + + L K ++ DD + K+ Sbjct: 177 VEPDLAMITNVGVTHIENLGSKENIFKAKTEI-TKGLKKGGTLLVNGDDEFFKDYTNDEF 235 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N V+ VG + + + GK++ F +P ++ VYNAL A Sbjct: 236 N----VVKVGINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYT 291 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G++ + E L+ R + N G +D + SN Sbjct: 292 GFHFGLNYEQIKEGLDDFMPTGNRMKIEEVN---GITLIDDTYNSN 334 >gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 463 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 137/349 (39%), Gaps = 34/349 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR IQ G +F A+ G + DGH ++ A +GA VV S Sbjct: 24 VRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPY---------- 73 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++VD++ + L A ++ I+ +TG+ GK+S ++ +R + P Sbjct: 74 -PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALER-------MAP 125 Query: 150 TSTISSFAQDNRLTTPSPIYLAK----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S N P+ LA+ +L + G+ H + L Q + I I Sbjct: 126 EKVHYSLKSYNN-HVGVPLSLARMPEESLFGIFEMGMNHAGELSDLTKLVQPDVALITAI 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A + H + + A AK +FE L AII D Y + +A Sbjct: 185 APA-------HAAFFADETAIAEAKSEIFEG-LSSGGIAIIPHDSPYRDLLTAKAQEKKA 236 Query: 266 RVLSVGY-QGKFIHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S G+ +G I + + + VT S+ + F + E + NA+ + Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVD 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM 371 A+G D L L + GR + F G I +D ++ +N M Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASM 345 >gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii FI9785] Length = 455 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 36/371 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 73 MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + + T V G F P+ G+ V NAL A + Sbjct: 236 EKSTFGFREEDTVFATIFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383 G + + + L R ++ +G G +D + SN +R +T+ Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VRAVTTSF 345 Query: 384 IIVVFGCGGDR 394 V+ GG R Sbjct: 346 GQVMVEDGGRR 356 >gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 456 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 9/114 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + VS+DSR IQAG +FVA+ G + DGH ++ Q A+GA +V AT+ Sbjct: 24 RFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVE----GATL-- 77 Query: 89 NTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVV +TRK L+ L A + + AVTG+SGK++V + I + G Sbjct: 78 --PQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGKTTVKEMLASILRTRG 129 >gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii PYR-1] gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii PYR-1] Length = 478 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 15/190 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ + +AY R + P + ++ DD ++ + +R +G RVL Sbjct: 193 TNIEADHLDFFGSVEAYTEVFDRFAGRIDPGGA-LVVCVDDPGARALAERLSGSGLRVLR 251 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGLC 322 G G + QQ T +V E + +PG NAL A Sbjct: 252 YGSTGT--GALDATLLEWTQQGTGAVASIALRTEARPLTMRLSVPGRHMALNALGALLAA 309 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380 G D VL+ L V RFE VG ++ G R++ DYAH + L +R + Sbjct: 310 REAGADLESVLDGLAGFEGVRRRFELVG-SANGVRVFDDYAHHPTEVRATLTALRAVVDQ 368 Query: 381 --SGRIIVVF 388 SGR IVVF Sbjct: 369 AGSGRAIVVF 378 >gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis ATCC 49124] Length = 479 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 42/360 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + IN++ DSR I AG +F+ + G + DGH FI A GA A ++ +D A Sbjct: 43 YEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFENGALA-----TFTEKDLPA 96 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV D F L A L K +++AVTG++GK++ + I ++ Sbjct: 97 ---DQAHILVDDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILA----TT 148 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 ++ T +N + P Y A + + + V + H D H L + K Sbjct: 149 YRTYKTQG----NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 198 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRA 260 T +G H+++ ++ KM++ ++ +P S ++ +D D + ++ Sbjct: 199 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSDPIVDPFLPSNLEVV 257 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 L+V +F K +T S D P+ G++ NA+VAA Sbjct: 258 RFGDGAELTVSELTEF-----------KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAY 306 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + +G+ +L L L + R E+ + G I D Y ++++IL+ I Sbjct: 307 VAKHLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 365 >gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. AA4] Length = 479 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 95/390 (24%), Positives = 157/390 (40%), Gaps = 61/390 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----------AEAIVVSSAYSLQDFSA 84 D+R + G +F+A+ G + DGH F +A+ G A AIVV Q S Sbjct: 8 DTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQANSG 67 Query: 85 TIR---------SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 ++ + + R + A+ ++ VTG+SGK+S + Q Sbjct: 68 SVALTGDTDGSGAAVLAALAKLARHVVDRLAAGGL-----TVIGVTGSSGKTSTKDVIAQ 122 Query: 136 ICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEA 189 + + +GPT + SF ++ L P A A + +S++GV H++ A Sbjct: 123 LIE-------PMGPTVAPPGSF--NSELGHPWTALRADASTKFLVLEMSARGVGHIAAAA 173 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + R+ G+ N+G H+ +++ AK L E LP++ A++ D Sbjct: 174 ET---TPPRI-------GAVLNVGSAHVGEFGSREGIAKAKGELVEA-LPEDGLAVLNLD 222 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPL 306 D + R R++ VG G I + + I+ EG + PL Sbjct: 223 DPLVAAMASRTK---ARIVGVGESAGAQIRAADITVDAEARPSFRLITPEG-EAPVTLPL 278 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365 GE V NAL AA + +G + + + L L R V T + G I D Y Sbjct: 279 HGEHHVGNALSAAAIARELGATTEEIAQRLSSLQRRSERRMEVTTRADGVTILNDSYNAN 338 Query: 366 SNSLEMILKNIRTIT-SG-RIIVVFGCGGD 393 S+ LK + +++ SG R V G G+ Sbjct: 339 PESVRAGLKALASMSRSGRRAWAVLGVMGE 368 >gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 242 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 15/130 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V +D+R + G +FVA+ G + D H F +A A GA A++VS + + Sbjct: 33 LDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------D 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V +TR+ A+ + + P ++A+TG+SGK+SV I + G + + Sbjct: 84 LPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY---- 139 Query: 150 TSTISSFAQD 159 T S+F D Sbjct: 140 --TASNFNND 147 >gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium pseudotuberculosis 1002] Length = 485 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 19/197 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ ++++AYF + + L+P S ++ DD ++ + ++ H + Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVS-LVVCLDDPHTAMLGQKIHEKHKDIKV 247 Query: 270 VGY-----QGKFIHLKKVCA-----IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 VGY ++ + K H+ TI V G++ + + PG V NA A Sbjct: 248 VGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAAL 307 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMILKN 375 + G D + + V RFE+ G + G +Y DYAH + +L Sbjct: 308 TAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTA 367 Query: 376 IRTIT----SGRIIVVF 388 R GR++V+F Sbjct: 368 ARAKLQARGQGRLLVIF 384 >gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium adolescentis ATCC 15703] Length = 489 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR I G +FVAI G + DGH F+P+ AQGA A +V + + P +V Sbjct: 34 TDSRQIVPGSVFVAIAGERVDGHDFVPKVGAQGAVAALVDHEIA--------GAQVPQIV 85 Query: 95 VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V+NT K L A R + P ++ +TG+ GK++ ++ + + G + +G Sbjct: 86 VENTVKALGALAKHNIERRRALESPFTVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVG 144 >gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium extorquens PA1] Length = 487 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 92/387 (23%), Positives = 150/387 (38%), Gaps = 56/387 (14%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + S D+R ++ G +F AI G DGH F+ A+ +GA A VV+ + ++F Sbjct: 25 RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAAVVAEVRA-KEFEGV-- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+L V L A R G + I+AVTG+ GK+ ++ + G Sbjct: 82 --GPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAVTGSVGKTGTKEALRHVLSAQGA 139 Query: 143 SSFQI-------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + + G T++ +D R GV + + +HG + Sbjct: 140 THASVASYNNHWGVPLTLTRMPEDTRF------------------GVFEIGM---NHGAE 178 Query: 196 QHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 L ++ T + HI++ ++ A +AK +F L P A+I D+ + Sbjct: 179 ILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYE 237 Query: 255 EVMKRAHNA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPG 308 ++ A + RV++ G VCA I + V++ +V G + PG Sbjct: 238 RLLAHAQASRAGRVITFGEH----EAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPG 293 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSN 367 N+L A+G D A L L GR E G + VD ++ +N Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353 Query: 368 SLEM-----ILKNIRTITSGRIIVVFG 389 + L I T GR I V G Sbjct: 354 PASIRAALATLAGIDTGAKGRRIAVLG 380 >gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga naphthophila RKU-10] Length = 426 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 100/453 (22%), Positives = 185/453 (40%), Gaps = 71/453 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 +S+ ++ G +FVA+ G + DGH FI +A+ GA A++ T+ S+ I +V Sbjct: 12 NSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERK--------TVNSDR-IFLV 62 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +++ L+ A G ++ VTG+SGK++ + + + + S Sbjct: 63 ESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLK------------NKRSV 110 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F + T + L+ L+ + + + + AS G H N+G Sbjct: 111 FKTPGNMNTEYGLPLS-ILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNA 169 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H+++ T++ KM + + + + A+ + DD+ + + R + L G + Sbjct: 170 HLEFFGTRERIMETKMEII-KYSKENATAVTFFDDSDLRREVPRYR----KTLFFGKESG 224 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF---QVYNALVAAGLCIAIGIDSA 330 LK TI+ E + F+ LF L G + Q+ N +AA LC+ + Sbjct: 225 DSVLKGWWYYEGS---TIA-EFEAFESLFTVKLSGYWNGGQLLN--IAASLCVMRALGET 278 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGRI 384 + + L L VPGRF + G + VD + ++ S+E +L+ G+ Sbjct: 279 VDIFDLASLKTVPGRF---NVREKEGVLIVDDTYNASPEAFQTSIEALLR-----FPGKK 330 Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP------------RSEDPEKIR 429 V G G+R + +GK L++ D V P +S+DPE I Sbjct: 331 FAVVGAMKELGERSKEFHEELGK-RLNVLDGVYVFLSEPEAEWIKSEKIILKSDDPEDIA 389 Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459 ++ + + K +R I +EM K+ Sbjct: 390 KDLAARVTEGDVVLFKASRAVRIERVLEMFEKE 422 >gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis L2-32] Length = 489 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR I G +FVAI G + DGH F+P+ AQGA A +V + + P +V Sbjct: 34 TDSRQIVPGSVFVAIAGERVDGHDFVPKVGAQGAVAALVDHEIA--------GAQVPQIV 85 Query: 95 VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V+NT K L A R + P ++ +TG+ GK++ ++ + + G + +G Sbjct: 86 VENTVKALGALAKHNIERRRALESPFTVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVG 144 >gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio vulnificus CMCP6] Length = 453 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+RHI +F+A+VG + D H F QA+ GA A++V A L P+ Sbjct: 27 VSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALLVERALDL-----------PV 75 Query: 93 --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV +T+ L + ++ + +A+TG+ GK++V V I Q+ G F G Sbjct: 76 AQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVASILQQKGKVLFTAG 133 >gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium narugense DSM 14796] Length = 477 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 168/386 (43%), Gaps = 53/386 (13%) Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 PM++ ER +S DSR I+ +F+AI G DGH FI A+ QGA I+ S SL + Sbjct: 40 PMEF-ER----ISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGII--SELSLAE 92 Query: 82 FSATI-----RSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + T+ ++ + V NT L++ +R + + E ++ +TG+ GK++ ++ Sbjct: 93 VANTLGNIVFGTDFSFIKVPNT--ILAMHDIARGFRQRIEKVIGITGSVGKTTTKEILKT 150 Query: 136 ICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + L +Q T+S+F +N + P ++ AK G+ +++ + Sbjct: 151 L-----LKGYQ-----TVSTFGNFNNEIGLPLSLFRAKKNDKF---GIFEMAMRSKG--- 194 Query: 195 DQHRLDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 + +L I + G T + HI + + AK E+L A + + YS Sbjct: 195 EISQLCSIAMPDIGIITRIAESHIGLLGSMENIARAK----GEILDFVDSAFLNFNCKYS 250 Query: 254 K----EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 + E++K V+ G + IH + + + G+ +F+ P Sbjct: 251 RKIFGEMLKDKKGKPKEVIWFGKESDLYIKSHEIFIHGSR---LELSGRFGNFVLRAPNI 307 Query: 310 F--QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHT 365 F Q L + + +G+D + ++L+ H + GRF G +I +D Y T Sbjct: 308 FLPQFEPLLASVAVARFLGLDWNEINDNLQGYHPLQGRFL---IKKLGDQIVIDDSYNAT 364 Query: 366 SNSLEMILKNIRTITSG--RIIVVFG 389 S L+ I+++ G R I VFG Sbjct: 365 CTSFLKGLETIKSLKFGNRRKIFVFG 390 >gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium resistens DSM 45100] Length = 516 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 97/399 (24%), Positives = 162/399 (40%), Gaps = 76/399 (19%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAYS 78 + V DSR I+ G IF+A+ G + DGH + A Q GA A+V S Sbjct: 40 LGPVEFDSRRIKPGGIFMALPGAQVDGHDYAASAAEQGAALLVVGKRVGAPALVAPSVEL 99 Query: 79 LQDFS--ATIRSNTP------ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 Q+ S + +T + +D +F + L +H ++ VTG++GK+S Sbjct: 100 RQEASNASAFEHDTQGHGAAVLAAIDRLARFNT---DALVAEHGMTVVGVTGSAGKTSTK 156 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHV 185 + I + +G + + P + +N + P A+ +S +S++GV H+ Sbjct: 157 DLIGAILREAGPT---VAPPGSF-----NNEIGLPYTALRAEEGTKYLVSEMSARGVGHI 208 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +H + G N+G H+ ++ A AK L E LP+ A+ Sbjct: 209 ----------RHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIAQAKGELVEA-LPENGLAV 257 Query: 246 IYADDAYSKEVMKRAH---------NAGC----RVLSVGYQGKFIHLKKVC----AIHNK 288 + ADD + R H C R ++V Y I L +V A+H+ Sbjct: 258 LNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYASDIQLDEVARARFALHHP 317 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRF 346 ++VE F G QV NAL AA + + G+ + V L HV R Sbjct: 318 YGDPVAVELGVF-------GAHQVSNALAAAAVGMECGMSATDVARALNG-HVAASVNRM 369 Query: 347 EFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 + V T +R G ++ ++ +N S+ + + SGR Sbjct: 370 D-VRTRARDGVTIINDSYNANPESMRAGIDALAYTASGR 407 >gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroherpeton thalassium ATCC 35110] Length = 473 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 50/328 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTP 91 DSR I G IF A+ G DGH F+ A GA VVS+ + +A + Sbjct: 34 DSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTENL 93 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 L V + L A+R K P I+ + G++GK++ + ++F++ + Sbjct: 94 FLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKEMTAAVLG----TTFRV--VA 147 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P ++ + + ++ G+ H HG + G Sbjct: 148 TEGNF--NNHIGVPLTLFRLRDDTEIAVVEMGINH-------HGEMNELCQIAEPTHGLI 198 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-----MKRAHNAG 264 TN+G +H ++ T + A+ L+ L + ADD + + ++ + Sbjct: 199 TNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIE 258 Query: 265 CRVLSVGYQGKFIHLK-------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 L + K + L K+C KQ +T++++ + G VYNAL Sbjct: 259 QPNLGLNIWAKEVQLNQQGCASFKICT--PKQALTLNLQ---------ISGRHNVYNALA 307 Query: 318 AAGLCIAIGIDSALVLE--HLEKLHVVP 343 AA AIG++ LE L H VP Sbjct: 308 AA----AIGLNFGAKLESVKLALEHFVP 331 >gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/ D-alanyl-D-alanylligase [Kribbella flavida DSM 17836] Length = 470 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 39/359 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR--SNT 90 V+ DSR + AG +FVA+ G + DGH ++P GA S T R Sbjct: 30 VAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGAT------------VSLTTRPVDGC 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +T+ L A + + PE ++ +TG+ GK+S + Q+ G + + P Sbjct: 78 PCIVVADTQVALGELARYVVAQLPELTVIGLTGSQGKTSTKDLIAQLVAPYGPT---VAP 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 T + +N + P + + + YL ++ G H+ A + ++ G Sbjct: 135 TGSF-----NNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYLCRITPPKV-------G 182 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G HI ++ A AK + + P + A++ ADD + R R Sbjct: 183 LVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGT-AVLNADDPRVAAMASRTEQT-IRT 240 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + T+ +G+ F L GE V NAL AA +A+G+ Sbjct: 241 FGEAPEADVRATDLEVDGEGRPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALAVGL 300 Query: 328 DSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 V + L V R E V G ++ A+ +N S+ LK + I R Sbjct: 301 TPEQVADGLNAAARVSQARMEVV--ERPDGVTVINDAYNANPDSVRAALKALVAIGRAR 357 >gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum Nigg] Length = 450 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y D+ Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRGPDYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQI 136 +L V + R+ L A R G H E ++ +TG+ GK++ SF QQ+ Sbjct: 81 ----LLHVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKSFTQQL 125 >gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enhydrobacter aerosaccus SK60] Length = 500 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 28/243 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 ++ +D+R I+ G IF+AI G+ DGH ++ A +GA +VS A + S+ P Sbjct: 32 KIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKGAVLAIVSRA---------VESDLP 82 Query: 92 ILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LVV +T+ L + +HP ++A+TG+SGK++ + I R I PT Sbjct: 83 QLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGKTTAKEMLGSILNR-------IAPT 135 Query: 151 STISSFAQDNRLTTPSPIY-LAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGS 208 I+ +N L P + L A Y + G HV A + L +K Sbjct: 136 -LITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEIAYTTQL-------VKPDVAC 187 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+G H+ + K +++ L + + + DD Y ++ A +L Sbjct: 188 VLNIGTAHLGEFGGRDNIAKTKSEIYQGLSDAGTAIVPFGDD-YFDTLLNNAQQFTQNIL 246 Query: 269 SVG 271 + G Sbjct: 247 TFG 249 >gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter chlorophenolicus A6] gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter chlorophenolicus A6] Length = 525 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 42/278 (15%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 L+ R G+ + LA+TGT+GK++ + + + +GL + +G Sbjct: 126 LAWRVRRREGRKTADWLAITGTNGKTTTVGLTESMLRAAGLKAIAVG------------N 173 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + P + + + Y +VE SS L H + + +A N+ DH+D+H Sbjct: 174 VGKPILDAIREPVEY------DVFAVELSSFQL--HWAESLSPLASVCLNVAEDHVDWHG 225 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFI 277 + +Y K +++E + A +Y + + E M NA GCR ++G+ Sbjct: 226 SYDSYLADKAKVYE----RTQKACLYNAEQFETERM--VENADVVEGCR--AIGFTTVTP 277 Query: 278 HLKKVCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + + + +++ + E L P+ V NAL AAGL A G+D+ Sbjct: 278 AISMLGVVEGLLVDRAFIEERRDSAAELAAMADLGPIAPRHMVANALAAAGLVRAYGVDA 337 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 A V + + VPG G ++V+ + +N Sbjct: 338 AAVRQGIRDY--VPGDHRIQPVARHEGVLWVNDSKATN 373 >gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7] gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7] Length = 488 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 54/326 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 Q A+ +VVS+A + ++ I +V L R +G +A+ GT G Sbjct: 78 QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ S + + ++G +F IG ++S + RL T S +A+A S+L Q Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V TN+ DH+D + + F LP Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295 A++ DDA +E+M R G +++ G+ V A++ QQ T+ Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFHQQGHQCRFTVRR 277 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352 +GK D D L LPG+ V NAL A + ID + +++ L + + RF+ +G Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337 Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377 +G + V DY H + + +K R Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] Length = 486 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 22/319 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I+ G F AI G++ DGH + A+A GA IV+S A A R Sbjct: 26 ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLAMANGAAMIVISEAR----LPAMGRLT 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VVD+ L + I+AVTG+ GK++ +++ SG Sbjct: 82 VPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKTTTKEMLRRTLSPSGKVH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++++SF +N P+ LA+ + + GV + + ++ ++ Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPEDTDFGVFEIGMNHPEEIRPLAKM--VEPHVAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RV 267 T + H+ ++ AK +F+ + P +I D E ++RA A V Sbjct: 189 TTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGH--VILNRDNDQFEFLERAALAAGVEHV 246 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 S G K + L + A + +++ G+ + PG NAL G + + Sbjct: 247 HSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVLGTVMLVD 306 Query: 327 IDSALVLEHLEKLHVVPGR 345 D ++ L L GR Sbjct: 307 ADLDKAIDALATLQAEKGR 325 >gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Moorella thermoacetica ATCC 39073] Length = 465 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 164/377 (43%), Gaps = 49/377 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S+DSR IQ G FVA+ G + DGH FI A++ GA A + +S Q +R Sbjct: 26 VKGLSTDSREIQPGMAFVALKGERFDGHDFIGAALSGGAAAAIGTSFPGHQVVG--LRPG 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENIL-----AVTGTSGKSS-------VASFVQQIC 137 ++ VD+T L+L +L H + +L VTG+SGK++ V S V ++ Sbjct: 84 QALIQVDDT--LLAL--QKLAAYHRQKVLKGPLIGVTGSSGKTTTKNLIAAVLSPVLKVL 139 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 + G + +IG T+ A P + A A+ ++ +G ++ A+ Sbjct: 140 KTPGNFNNEIGLPMTLLRLA---------PWHQA-AVVEMAMRGKGEIASLAAI------ 183 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 + G TN+G H+ + AK L LP E A++ D+ + + + Sbjct: 184 ----ARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAA-LPAEGLAVLNGDNEWCRRL- 237 Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYNA 315 A CRV+ +G+ I+ + + + +V GK+ P+PG V +A Sbjct: 238 --AATCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRHNVEDA 295 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373 L A + ++G++ + L R + GG + + A+ +N S+E L Sbjct: 296 LAALAVGFSLGVEPETMARSLADWPAEDLRQDL--RPGPGGSLVFNDAYNANPESMEAAL 353 Query: 374 KNIRTITSGRIIVVFGC 390 + + + GR + V G Sbjct: 354 QALGAL-PGRRVAVLGA 369 >gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 455 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M + L + + +++N +FP + + V DSR +Q +F+A+ G K DGH F+ Sbjct: 1 MSVNRLTFHEICQILNS-PVFPAEI-DSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFL 58 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENIL 118 + +GA A +VS+ DF ++N PIL VD+ + L A + I+ Sbjct: 59 NEVEKKGAAAAIVSN-----DFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIV 113 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 A+TG+ GK++ + Q+ Q+ +F G Sbjct: 114 AITGSVGKTTTKHLLFQLLQKHFSVAFSPG 143 >gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM 20731] gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM 20731] Length = 461 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 102/400 (25%), Positives = 152/400 (38%), Gaps = 82/400 (20%) Query: 53 KEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR-- 108 KE +FI A Q AE +VVS+A I + P LV + R+ + S Sbjct: 50 KEGALVFIGHAACQIERAEVVVVSTA---------IHPDNPELVEAHRRQVPVIHRSDVL 100 Query: 109 --LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 L +H +AV G GK++ +S + I GL PT Sbjct: 101 AWLMNRHKG--IAVAGAHGKTTTSSMLSCITSDCGLD-----PT---------------- 137 Query: 167 PIYLAKALSYLSSQGVTHVS--VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 I + ++ L S + S V A + D L IA TN+ DH+D++ +Q+ Sbjct: 138 -IVVGGIVNNLGSNAASGKSDWVVAEADESDGSFLKFNPYIA-VVTNIEDDHLDHYGSQE 195 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 A + ++ + Y +D V RV+S G + A Sbjct: 196 NIQKAFAQFVSQIKEDGCAVLCYDND----RVRTIGEATDKRVISYGIDSQ-------DA 244 Query: 285 IHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLE 334 + + + +G FD ++ +PG V N+L A +G++ +L Sbjct: 245 DYQAKNIIYGTDGTHFDVVYQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILT 304 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 LEK RFE T + I+V DYAH ++ LK R R+IVVF Sbjct: 305 SLEKFSGAKRRFE---TKGKADGIWVVDDYAHHPTEIQATLKAARQTHPERLIVVF---- 357 Query: 393 DRDQGKRPIMGKIALDL-------ADIAIVTDDNPRSEDP 425 Q R ++ LD AD IVTD SEDP Sbjct: 358 ---QPHRYTRTQLLLDEFAVAFKDADKLIVTDIYAASEDP 394 >gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 479 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 38/316 (12%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138 ++A I + P + + L + L G+ N +AV+GT GK++ S + I Sbjct: 95 YTAAIHEDNPEFMAVKEKGIPMLSRAELLGEMMRNYKQAVAVSGTHGKTTTTSMITDI-- 152 Query: 139 RSGLSSFQIGPTSTISSFAQD--NRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLD 195 L + + PT ++ QD + SP +++ +A Y +S H ++E Sbjct: 153 ---LLAGNLDPTISVGGILQDIGGNIRVGSPELFVTEACEYTNSFLSFHPTMEV------ 203 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 N+ DH+D+ + Q RLF E LP +I + +E Sbjct: 204 -------------ILNIEEDHLDFFKDIQD-IRHSFRLFAEKLPSRGLLVINSGIDAVEE 249 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFL-FPLPGEFQV 312 + K GCRV++ G + K + + ++G+ + + + GE V Sbjct: 250 ITK---GLGCRVVTFGKDSSSTYTAKDITYDGFARPSYDLVIQGEVVNRITLGVTGEHNV 306 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 YN+L A + + +G V+ L K RFE G G I DYAH ++ Sbjct: 307 YNSLAAIAVAMELGAGFDAVMAGLRKFTGTDRRFEKKGEIG-GITIIDDYAHHPQEIKAT 365 Query: 373 LKNIRTITSGRIIVVF 388 L + ++ VF Sbjct: 366 LSAAKNYPHRKLWCVF 381 >gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT] gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT] Length = 458 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 51/341 (14%) Query: 65 AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPE 115 A+GAE + + +L+D ++A I + P LV ++ + G H Sbjct: 53 AKGAEIYIGHNGNNLKDVDLVVYTAAIPDSNPELVKARECNIQTMDRAEFLGHVMQGHKY 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAK 172 NI A++GT GK++ S I + L PT + N S ++ + Sbjct: 113 NI-AISGTHGKTTTTSMFSHISLSANLD-----PTILVGGNLDVINGNVRVGNSEYFVTE 166 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 A Y +S L + G+ L N+ DH+D+++ N ++ Sbjct: 167 ACEYKASF-------------LKFYPYIGVIL------NIEADHLDFYKDINDIQNTFLK 207 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F +L+P + I+ ADD EV K+ C V++ G + K + + N + T Sbjct: 208 -FAKLIPNDGFLIVNADDKRCVEVSKQVD---CNVITFGINNGDVRAKNI--VFNNGRPT 261 Query: 293 ISV---EGKDFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V E K F +PG + +AL +++ L + + +DS ++E L + RFE Sbjct: 262 FDVYRNEEKLFTLTLNVPGNHNILDALASISSALSLNVPVDS--IIEGLSTFNGAHRRFE 319 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G G + DYAH ++ L + R+ VF Sbjct: 320 IKGK-VDGITVVDDYAHHPTEIKAALNAAKNFPHKRVFCVF 359 >gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753] Length = 461 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/324 (22%), Positives = 136/324 (41%), Gaps = 56/324 (17%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ VS++SR ++ G +FV IVG K D H FIP A+ GA A ++ Q+ + Sbjct: 25 EVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAA-----CFTQQEPEEGFKY 79 Query: 89 -NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRS 140 + ++ V +T+K L FA+ + ++ VTG+ GKSS + +++ + + Sbjct: 80 LDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKRVHKTA 139 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + QIG T+ F D+ + + + + S+ G + RL Sbjct: 140 GNYNSQIGLPLTV--FGLDH------------------THEIAVIEMGMSNFG-EMERLS 178 Query: 201 GI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAY 252 I + TN+G HI+ +TQ+ K+ + + + L + P + ++Y Sbjct: 179 AIASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESY 238 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + +++ + C Y+ I K C + + + P G V Sbjct: 239 TGKIVWYGMESDCD-----YRAVNIDTVKDCT-----RFELHAPFGAHKIMIPALGLHNV 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHL 336 NAL A IA+ D L L+ + Sbjct: 289 SNALAA----IAVAYDQGLTLDDI 308 >gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM 20098] Length = 489 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 113/479 (23%), Positives = 188/479 (39%), Gaps = 78/479 (16%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR ++ G +FVAI G + DGH ++ QGA A +V + P +V Sbjct: 36 SDSRQVENGSVFVAIQGERVDGHDYVASVADQGAVAAIVDHEVP--------GAAVPQIV 87 Query: 95 VDNTRKFL-----SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 VDNT L + A R P I+ +TG+ GK++ + + +GP Sbjct: 88 VDNTVTALGDLAKANIARRRASGEPFTIIGITGSVGKTTTKDLTKALLS-------TLGP 140 Query: 150 T-STISSFAQDNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T + + SF +N + P + + + + Y ++ G HV + + IA Sbjct: 141 TVAPVGSF--NNEIGLPLTALTVGEHTRYFVAEMGANHVG-----------EIAHLTTIA 187 Query: 207 ----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +G H+ + + AK + LLP A++ DD + + + A Sbjct: 188 PPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPN-GIAMLNTDDEHVEAMSAVAPG 246 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----------ISVEGKDFDFLFPLPGEFQV 312 VL G A+H VT ++ +G+ +PG V Sbjct: 247 ---EVLRFGIDESNAGRD---ALHACDIVTDSFDRASFTMVAGDGEQSQVALAIPGAHNV 300 Query: 313 YNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--VDYAHTSN 367 NAL AA + +G+ D A VL E+ H+ P R V T RGG + +D + +N Sbjct: 301 MNALAAAMVAHRLGMPLEDIARVLG--EQRHISPHRMA-VSTVERGGARFTLIDDSFNAN 357 Query: 368 --SLEMILKNIRTITSG---RIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 S+ L + + G R+ V + GGD Q R I G A + +V + Sbjct: 358 PDSMHAGLDGLARWSEGAQYRVAVLGAMLELGGDEKQLHRSI-GAYAAEHGIDEVVAVGS 416 Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478 P + + + E+ G + + A+ A D++V + HE ++ G Sbjct: 417 PTDQALDALAGELAQG----AKNADGAMAVEWAHSAAQADDMIVRIAREHEGTVVLLKG 471 >gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia hollisae CIP 101886] Length = 454 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 21/146 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 LQD++ ELI Q + I+ VSSD+R + G +F+A+VG + D H F+ Sbjct: 9 LQDVLN---AELIGQ---------DVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVET 56 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A GA A++VS + + P LVV +T+ L + + + +A+TG Sbjct: 57 AKQNGASALLVSKVVDI---------DLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTG 107 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIG 148 + GK++V + I + G + + G Sbjct: 108 SCGKTTVKEMLAAILSQKGQTLYTAG 133 >gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B] gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B] Length = 470 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 141/349 (40%), Gaps = 49/349 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AV GT GK++ S + I +GL + IG ++++ RL Sbjct: 121 IAVAGTHGKTTTTSLLATIFTEAGLDPTVIIG--GRLNAYGAGARL-------------- 164 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 QG ++ S G + IA TN+ DH+D++ +A +A + F Sbjct: 165 --GQGEYLIAEADESDG----SFLCLAPIASVVTNVDADHLDHYAGIEAIDDAFVE-FLN 217 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +P ++ DD ++ R + ++ G+ K ++ K + +S++ Sbjct: 218 GIPFYGVNVVCLDDPGVARLLPRINRP---FVTYGFGEKARLRGRILETGAKSRFLVSLD 274 Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+D + PG V NAL A G+ + GI A++ E L K V RFE G R Sbjct: 275 GEDLGEMRLNHPGRHNVQNALGAIGVSLETGIAPAVIAEALAKFGGVGRRFEIKG--ERA 332 Query: 356 GRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADI 412 G + V DY H + L R + R +VV R + + G + AD Sbjct: 333 GVVVVDDYGHHPAEIRATLATARAVYPDRRLVV-AFQPHRFSRTKALFGDFCTCFEAADT 391 Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 ++T+ P SE P I G+ G E++ I ++K DV Sbjct: 392 LLLTEIYPASEAP-------IPGVSG--------ESLARGIRQVSKTDV 425 >gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tepidanaerobacter sp. Re1] Length = 462 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 101/409 (24%), Positives = 176/409 (43%), Gaps = 45/409 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I VS+DSR I G +FV + G DGH FI +A +GA AI+ + + I++ Sbjct: 25 QITGVSTDSRTINKGELFVPLTGPNFDGHDFIERAFEKGAAAILCDKNKRSKVDNLPIKN 84 Query: 89 NTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I+ VDN + LS + RL+ P +A+TG+ GK++ +I F Sbjct: 85 ---IIFVDNPQSALLSLSAYYRRLF-DIP--FVAITGSVGKTTTKEMTAEILNM----RF 134 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ TS +N + P I+ + V V + S+ G ++ Sbjct: 135 KVLKTSG----NLNNEIGLPLTIFRLE-----EGYQVGVVELGMSALGEISRMASVVRPK 185 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G HI+ ++Q AKM + E L + A++ D +E+ Sbjct: 186 IAVITNIGIAHIEKLGSKQNIARAKMEILEP-LGENDLAVLNGD---CQELWDARKTIVP 241 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCI 323 + + G + I + + + ++ ++ + G + F LPG V NAL A I Sbjct: 242 KTVFFGQERGDIKARNIKS-NSTNELEFDIYGCYGEMTFKALLPGIHNVNNALAA----I 296 Query: 324 AIGIDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 A+G + L E +++ L + R +F S G +D A+ +N S++ L ++ Sbjct: 297 AVGFEMGLTKEEIQQGFLNLKLPEMRLQF--KKSYFGADIIDDAYNANPDSMKSALDFLQ 354 Query: 378 TITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422 + G+ V+ G GD + +GK A + ADI I + +S Sbjct: 355 QYSYGKKRAVILGDMLELGDLSEKAHFEIGKYAAERADIFIAVGNYAQS 403 >gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK160] Length = 456 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/388 (22%), Positives = 156/388 (40%), Gaps = 74/388 (19%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-----VVSSAYS 78 Q+ + DSR I+ G +FV + G + DGH FI A QGA A V AY Sbjct: 20 QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATLSERPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G + +IG T+ +D + G H+ Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLR-KDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305 +++ A C+++ G I L ++ +++ ++S D +FL P Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQKIDLP 268 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + G++ NA++AA + G+ A + + +L + R E+ + G I D Y Sbjct: 269 VTGKYNATNAMIAAYAALQEGVSDADIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327 Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389 ++ +IL+ TI + GR + V Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLAVLA 355 >gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium QM B1551] Length = 469 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 1/138 (0%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H+ +T + Y AK + E L P I+ ADD K V+ +H G + Sbjct: 187 NIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLDVSHLQGVVYIGK 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G +F K + T+ + K++D P GE VYNAL A +G+D + Sbjct: 247 GDDSQF-QAKDIKYAKGGMAFTLKYQNKEYDAFIPGYGEHNVYNALAAIAAVFYVGVDIS 305 Query: 331 LVLEHLEKLHVVPGRFEF 348 + ++ L V EF Sbjct: 306 VAIQRLSLFEQVEEHLEF 323 >gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. CCGE1003] Length = 478 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 139/326 (42%), Gaps = 39/326 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVAI G++ D H F+ + A+ A +V+ D SA P+ Sbjct: 34 VSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVAARNVSAALVARVPDGWDVSA-----VPL 88 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +TR L A K ++AVTG++GK++V + I + ++ ++ +T Sbjct: 89 VRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGANERL---AT 145 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +F +N + P ++ A L+ G+ H + L + + L+ Sbjct: 146 VGNF--NNDIGLPLTLFRLNAAHRLAVVELGMNH---PGETSLLAKIAEPTVALV----N 196 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAH 261 N R+H ++ T +A + L P E A+ A+DAY+ ++ A Sbjct: 197 NAQREHQEFMATVEAVALEHASVIHALNP-EGVAVFPANDAYASIWRVAATGNRIVDFAL 255 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N R + G+F + ++++I F+ + G+ +NAL A Sbjct: 256 NTAERTTAAAVTGRF----------DGKRLSIETPEGAFEVTLQVLGDHNAHNALAATSA 305 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFE 347 +A G+ + LE V GR + Sbjct: 306 ALASGVSLDAIRRGLESFGAVKGRLQ 331 >gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora aurantiaca ATCC 27029] Length = 469 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 88/383 (22%), Positives = 154/383 (40%), Gaps = 64/383 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V DSR + G +FVA G + DGH + AI+ GA A++ + Sbjct: 25 RVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV---------- 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 S P+++V + + A + + P ++ +TG+SGK++ + Q+ R Sbjct: 75 SGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVR------- 127 Query: 147 IGPT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLD 200 +GPT + SF +N L P + + YL ++GV HV ++ D Sbjct: 128 LGPTVAPPGSF--NNELGHPYTALQATPETRYLVMEKGARGVGHV----------RYLCD 175 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + N+G H+ + + AK L E LP + A++ ADD + R Sbjct: 176 VVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPSDGLAVLNADDPRVDAMASRT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFP---------LPG 308 RV+ G + + + V ++++G+ + + P L G Sbjct: 235 R---ARVVRYGESER----------ADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTG 281 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 QV N+L AA + +G+ + L +L +V R V G + D Y Sbjct: 282 RHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPA 341 Query: 368 SLEMILKNIRTITS-GRIIVVFG 389 S + L+ + ++ GR + V G Sbjct: 342 STGVALRALASMRGEGRTVAVLG 364 >gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Selenomonas noxia ATCC 43541] Length = 469 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 89/396 (22%), Positives = 165/396 (41%), Gaps = 36/396 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +++D+R I +G +FVA+ G K DG F +A+ +GA A++V + S A ++ + Sbjct: 31 ITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALKKAKGTV 90 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L D+ + A K ++A+TG++GK++ + G Sbjct: 91 LKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRG----------K 140 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----GS 208 + A++ P+ L L + VE GL Q + + +A G Sbjct: 141 VCRTAENYNNEVGLPLTL---LGIVPEDFA--AVVEIGMRGLGQ--IAALAPVAAPTIGI 193 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-GCRV 267 TN+ H++ + + AK L E +P I+ ADD S+ R+ A G R+ Sbjct: 194 VTNVCEVHMELLGSIENIAKAKAELVEA-IPSGGTVILNADD--SRVAAMRSFAADGVRI 250 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+ + + + + + ++ + ++ LPG V N L A A+G Sbjct: 251 LTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVSNTLAALAAGFALG 310 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRI 384 + + L + R+E T S G ++++ Y + +S+ L+ + GR Sbjct: 311 LTPQEMQAGLRNIEGTKMRYE---TESVGAWMFINDAYNASPSSMHAALETTAALYPGRK 367 Query: 385 IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416 I V G G ++ R ++G+ A +L A+VT Sbjct: 368 IAVLGDMLELGAAAEEAHR-MIGRRAAELGFAAVVT 402 >gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus selenitireducens MLS10] Length = 456 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 6/113 (5%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + I V +D+R+I G +F+ IVG + +GH F+ QAI +GA+A + S+ A Sbjct: 23 EDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTK------EAD 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + P++ V++T + L A ++AVTG++GK++ + +C+ Sbjct: 77 APEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCE 129 >gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3] gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3] Length = 488 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 54/326 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 Q A+ +VVS+A + ++ I +V L R +G +A+ GT G Sbjct: 78 QQADVVVVSTAINPENPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ S + + ++G +F IG ++S + RL T S +A+A S+L Q Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V TN+ DH+D + + F LP Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295 A++ DDA +E+M R G +++ G+ V A++ QQ T+ Sbjct: 225 YGVAVVCIDDAVVREIMPRI---GRHMITYGFSDD----ADVQALNFHQQGHQCRFTVRR 277 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352 +GK D D L LPG+ V NAL A + ID + +++ L + + RF+ +G Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337 Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377 +G + V DY H + + +K R Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis 3_1_45B] Length = 473 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 29/242 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++AG +FVA+ G + DGH ++ QA GA +VV + N P Sbjct: 43 VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVVEHVET--------GLNVPQ 94 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTS 151 LVV+N+R+ L A + + AV G++GK++ ++ I G+ + + Sbjct: 95 LVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIH----A 150 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS-SHGLDQHRL-DGIKLIAGSF 209 T +F +N + P + G VEA +H + RL D I+ Sbjct: 151 TEGNF--NNDVGVPHTLLGLHC-------GCRAAVVEAGMNHRGEMARLADWIRPTVVLM 201 Query: 210 TNLGRDHIDYHQT--QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN R+H Y +T + A+ N L LP + A+ ADD + A G R Sbjct: 202 TNAQREHQAYLETVAEAAFENG---LLIAALPNDGVAVYPADDPCADVWASYALARGVRT 258 Query: 268 LS 269 L+ Sbjct: 259 LT 260 >gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34] Length = 454 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 157/376 (41%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI A GA A FS Sbjct: 20 EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P + VD+ + AS K +++AVTG++GK++ + + Sbjct: 69 EREVAGHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 S + T ++ +N + P Y A + + + V + H D H L + Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257 K G T +G H+++ +++ K+++ + + +S I+ A D Y E Sbjct: 175 KPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGM---DSDGILIAPADTIVDPYLPE-- 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G G I +K + +K+ +T D P+PG++ NA+V Sbjct: 230 ------SQMVIRFG-DGAEIFVKDLQ--ESKESLTFMTNVIDRPITLPVPGKYNATNAMV 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + I ++E LE + + R E+ + G I D Y ++ +IL+ Sbjct: 281 AAYVGKLLAISDDDIVEALETIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339 Query: 377 RTITS---GRIIVVFG 389 I + G+ I V Sbjct: 340 SKIPANEGGKKIAVLA 355 >gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [beta proteobacterium KB13] Length = 451 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/329 (24%), Positives = 126/329 (38%), Gaps = 51/329 (15%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V++DSR + IF+A+ G+K DG FI + Q + + + N Sbjct: 28 DVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ---------KYNAR 78 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 VV++ +KFL + + K +A+TG++GK++ + + Sbjct: 79 YAVVESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLK------------- 125 Query: 152 TISSFAQDNRLTTPSPIY--LAKALSYLSSQGVTHVSVE--ASSH-GLDQHRLDGIKLIA 206 + F D L T + LS L SQGV +V ++H G H D I+ Sbjct: 126 --NKFNDDAVLFTKGNYNNEIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNI 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY--------SKEVMK 258 TN+G HI +++ K ++F L I+ DD Y K Sbjct: 184 SIITNIGDAHIGNFGSKEKIAEEKKQIF-NFLKTNELKILNKDDEYFQILNQSPGKTFCI 242 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 +N VLS K L + H Q + I F L G+ + N +A Sbjct: 243 SNNNDDSDVLSF----KSCELNMIELTHKFQSIKIK---------FQLTGQHNLQNFAIA 289 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 I IGID + ++ L GRF+ Sbjct: 290 CAALINIGIDFQELEKYFGNLESTNGRFK 318 >gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11H7] Length = 457 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 57/338 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR +F+AI G DGH F+P+ + +G +++V+ + N P Sbjct: 31 ISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKG-----MQKLLPDNFPC 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 VV++T + + K ++A+TG+ GK++ V ++ ++ G S+F Sbjct: 86 WVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTKEMVGEVLKKLGKIKLSHSNFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG TI + +++++ + +G+ + L +H I +I Sbjct: 146 EIGVGLTILAADKEDKVLVLE----------MGMRGLGQI------ENLSKHSEPDIAVI 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G HI ++++ AK + + L PK II A+D +E + R + G Sbjct: 190 ----TNIGTAHIGLLRSKKNITYAKCEISKFLNPK-GVVIIPANDLLLEETL-REYWKG- 242 Query: 266 RVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV+ V +G F + ++ TI +E F F G N L A Sbjct: 243 RVIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTFKISF--EGFHNASNFLFAY 300 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 + +GID E K F+FV S GGR Sbjct: 301 AVAKELGID----FESFNK-------FDFV---SLGGR 324 >gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anabaena variabilis ATCC 29413] Length = 451 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 132/324 (40%), Gaps = 44/324 (13%) Query: 13 ELINQLSIFPMQWRERKINEVSS----DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 +LI L P E + +VSS D+R I+ G +F+A G K DGH F+ AIA GA Sbjct: 9 QLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIANGA 68 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A +V Y F P+L V NT + + ++ VTG+ GK++ Sbjct: 69 IAAIVDDDYENPGF--------PVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVGKTT 120 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G T +F +N + P K L L+++ + +E Sbjct: 121 TKELIAAVLGTKG------NIHKTYGNF--NNEIGVP------KTLLELNAEH-DYAVIE 165 Query: 189 ASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + G Q + + IA G TN+G HI+ +++A AK L E +PK+S A Sbjct: 166 MAMRGRGQ--IAELTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAE-MPKDSVA 222 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 I+ D+ + + VL+ G G I V + V G Sbjct: 223 ILNHDNPLLMATAGKFWSG--EVLTYGLSGGDIQGSLV------DNAIVEVAG--LRLPL 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGID 328 PLPG N L A + +GI+ Sbjct: 273 PLPGRHNATNYLAALAVAKVLGIE 296 >gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis 12822] gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica RB50] gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis] gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica RB50] Length = 468 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 46/266 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AV GT GK++ S V + GL +F IG ++S + RL Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARL-------------- 151 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 QG ++ VEA D L+ + ++A TN+ DH+D + A + F + Sbjct: 152 --GQG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQ 205 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293 LP AI+ ADDA +E+M + + G +VCA + ++ Sbjct: 206 RLPFYGSAILCADDANVREIMPFVSRP---ITTYGLSPD----AQVCAQDVQADGTRMRF 258 Query: 294 SVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +V+ +D D + P LPG V NAL A + +G+D A + E L V RF Sbjct: 259 TVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRF 318 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMI 372 ++ G + V AH + ++ Sbjct: 319 ------TQWGDLPVPAAHGGGTFTLV 338 >gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK408] Length = 456 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 156/383 (40%), Gaps = 64/383 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I+ G +FV + G + DGH FI A QGA A + S Sbjct: 20 QFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGAAATL----------S 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 + ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 69 ERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L K+ I+ AD + Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLR-KDGLLIVPAD-----K 221 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310 ++ A C+++ G I L ++ +++ ++S D +FL P+ G++ Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSF---DCNFLEQKIDLPVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + G+ A + + +L + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGVSEADIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFG 389 +IL+ TI + GR + V Sbjct: 333 RLILETFSTIPANPGGRKLAVLA 355 >gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Leuconostoc kimchii IMSNU 11154] Length = 443 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/373 (23%), Positives = 157/373 (42%), Gaps = 60/373 (16%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+ V+ +SR ++ G +FVA+V + DGH ++ A+ +GA A++V ++ I Sbjct: 23 KVTGVAFNSRDVKIGDLFVALVAD-SDGHRYLQDALDRGAAAVLVDDNHA-------ISE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++V +T L AS + ++A+TG++GK++ I + +F+ Sbjct: 75 KLPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTKDMTAAIVS-TVFKTFK-- 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKL 204 T ++F +N + P + LS V V + G L Q I + Sbjct: 132 ---TPNNF--NNEIGVPMTL-----LSMPEDTEVLVVELGMDRSGQLTMLSQLVQPDIAI 181 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVM 257 I T +G HI++ +T+ AK+ + L +P + P + A +M Sbjct: 182 I----TMIGEAHIEFFKTRANIAKAKLEITNGLKADGVLFIPFDEPLLTQA------VIM 231 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 +R V + G+ I + + H + K+ F PL G + + NAL Sbjct: 232 QR----------VVWFGQNIDAVETASDHT------NFIYKNTRFAIPLIGGYNIMNALA 275 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A I + ID ++ L+ + R E + T +RG + D Y ++ +L + Sbjct: 276 AISAGILLHIDLKKAVQALQTFDLTKNRTERLVT-ARGVILISDVYNSNPTAVAAVLATL 334 Query: 377 RTITSGRIIVVFG 389 + I + VV G Sbjct: 335 KAIPAQHKYVVLG 347 >gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus haemolyticus JCSC1435] gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus haemolyticus JCSC1435] Length = 449 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 43/282 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+A+TGT+GK++ +S + + ++S L+ G ++S AQ+ T+P+ YL LS Sbjct: 113 IIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNIGYVASKVAQE---TSPNE-YLITELS 168 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 GV +Q+R I +I TN+ H+DYH+T + Y NAK ++++ Sbjct: 169 SFQLLGV------------EQYR-PHIAII----TNIYSAHLDYHETLENYQNAKKQIYK 211 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293 + Y Y + + + N + L Q + I++K ++ ++ Sbjct: 212 NQTEND-----YLICNYHQRHLIESENLKAKTLYFSTQQEVDGIYIKDGFIVYQGIRII- 265 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D L LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 266 -----NIDDLV-LPGEHNLENILAAVLASILAGVPIKAIIDSLTTFSGIDHRLQYIGTN- 318 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S + +V+ CGG DR Sbjct: 319 RTNKYYND-SKATNTLATQF----ALNSFKQPIVWLCGGLDR 355 >gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU144] Length = 449 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + + L + S L + P Sbjct: 54 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + I Q+S L+ G ++S AQ+ + S YL L Sbjct: 113 -IIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G+ E H I +I TN+ H+DYH+T + Y NAK +++ Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292 + + Y Y + + + N + Q + I++K + N ++ Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + KD LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355 >gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii B14] Length = 824 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 33/356 (9%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 R+ + + +DSR + +F A+ + DGH +I + +G VVS D Sbjct: 20 RDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRGVRNFVVS------DVP 73 Query: 84 ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 S+ P L V NT + L A R + I+ +TG++GK+ V ++ Q Sbjct: 74 NNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKTIVKEWLYQ----- 128 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 L S + T + S+ ++++ P ++L L+ + G+ + L D Sbjct: 129 -LLSDDMYVTRSPRSY--NSQIGVPLSVWL---LNKQTEIGIFEAGISEPGEMLALR--D 180 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKR 259 I+ TNLG H + ++++A K+ LF ++ I+Y DD + ++ Sbjct: 181 IIQPTIAVLTNLGSAHQENFKSKEAKCREKLILFH-----DAKTIVYNMDDEIINDTVES 235 Query: 260 AHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + +G ++ S + +K V N + + + K+ ++ P E + N+++ Sbjct: 236 YNYSGEKITWSFKNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFIDEASISNSIIC 295 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 A + + +G+ + ++ + KL V R E V G + D Y NSL++ L Sbjct: 296 AIVTLCLGVSTDVLSRRMAKLEPVAMRLE-VKVGQHGCTLINDSYNSDVNSLDIAL 350 >gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp. At-9b] Length = 453 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 42/327 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +V +D+R + AG +FVA+VG + D H F+ AIA GA+A++VS + Sbjct: 24 VGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVSK---------HLPVA 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TR + + + ++A+TG+SGK+SV I + G + + G Sbjct: 75 VPQVVVADTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N P + + L K Y + + A+ G + D + Sbjct: 135 L--------NNDFGVPMTLLRLTKDHDY------AVIELGANHQGEIAYTTDLTRPETAL 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 NL H++ + AK +F LP AII AD S ++ + L Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIFAG-LPAHGTAIINAD---SNDLANWQPQLVGKTL 236 Query: 269 ---------SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 V + I L+ + T+ D PLPG + NAL AA Sbjct: 237 WRFSPQPQAEVEFGASDIQLRA-----DATSFTLHTPRGDIAITLPLPGRHNIANALAAA 291 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRF 346 L +++ + + L KL VPGR Sbjct: 292 ALALSVDAPLSAIQAGLTKLQPVPGRL 318 >gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii DSM 6725] gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 83/402 (20%), Positives = 164/402 (40%), Gaps = 56/402 (13%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W E + S+ ++ ++ I V I GH ++ G E ++ ++A S +D Sbjct: 27 WVEGSDMQESATTKMLRENGINVYI------GH---DESHIHGDETVIYTAAIS-KDNPE 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + L + +FL L K +N++ ++GT GK++ S + I +++ + Sbjct: 77 LLAAKRMNLKIYERAEFLGLLM-----KDFKNVITISGTHGKTTTTSMIGYILKKANYN- 130 Query: 145 FQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 PT + +F + N + + +A Y+ S + ++ Sbjct: 131 ----PTVLVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLKFNPTI-------------- 172 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G N+ DH+DY + + N+ + F + +P ++ DD K+++ + Sbjct: 173 -----GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVVNYDDKNVKDIINQL- 225 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALV 317 N +S + C+ V+ + + L +PG VYNAL Sbjct: 226 NTQIICISTKEKTDIFADNISCS---DGYYEFDVKNNNDEILAHIKLNIPGFHNVYNALA 282 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 A + +G++S + + L + R E VG G +Y DYAH ++ L ++ Sbjct: 283 AFAVASKLGVESITIEQALSEFRGASRRLEKVG-EFNGIYLYDDYAHHPTEIKATLATLK 341 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417 I+ G+++ +F + ++ + A L LAD IVTD Sbjct: 342 KISEGKVLAIF--QPHTFSRLKTLLNEFAESLQLADKVIVTD 381 >gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium ATCC 27725] Length = 448 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 51/342 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR +Q G +F AI +G+ +I + +GA A+VV+ Y D Sbjct: 42 EIGHVVMDSRKVQKGDLFFAI----NNGNNYIEDVLNKGA-ALVVADNYKGND------- 89 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++ V+NT + + A + I+A+TG++GK++ + + + +++ +G Sbjct: 90 -KRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKTTTKDMMYSVLSQKYVTAKTMG 148 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 +N + P I L S V + + S G +D + IA Sbjct: 149 NL--------NNHIGVPFTI-----LQLDSKYEVAVLELGMSGFG----EIDLLSNIAKP 191 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G H+++ +T++ F AK L + + KE+ II+ DD + K + G Sbjct: 192 DIGVITNIGDSHLEFLKTRENVFKAKTELI-KYITKEN-LIIFGDDPFLKIL------DG 243 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + VGY + K +K +S E + + L G+ NA +A + Sbjct: 244 IK---VGYGDNNNYQIKNFMDSDK---GLSFELDENKYEVALNGKHNCLNAAMAVVIGKK 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 +GI + L+ L + P RF+ + + +Y++ A+ + Sbjct: 298 MGIPYEEIKAGLKNLELTPMRFQKI---EKENIVYINDAYNA 336 >gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pyramidobacter piscolens W5455] Length = 451 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/324 (23%), Positives = 129/324 (39%), Gaps = 27/324 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR Q G FVA+ G K DGH FIP +A+G IV +A +++S+ I Sbjct: 20 VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L + L+ AS +Y K E + +A+TG+ GK+S + + + + F+I Sbjct: 80 LTPERCEYGLASLAS-VYLKSLERLRETVAITGSVGKTSAKNDTKALLE----GYFKIHA 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + N L + LA + V + + A+ G + + Sbjct: 135 AA-----GNYNTLIGCAVTVLAAP----ADTEVVLLEMGANHRGEIAEMTRYLPPTIAAV 185 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 T + H++ + + AK +F A+I D+ + KRA V+ Sbjct: 186 TEVAPAHLENFGSLEGVLQAKTEIFAS--ENLRCAVINGDNGM---LCKRAEELRLPEVI 240 Query: 269 SVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G +G+ + HL + + ++G F+ PL G Q+Y A + Sbjct: 241 RFGRRGEVLFAREHLSWEKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGR 300 Query: 325 IGIDSALVLEHLEKLHVVPGRFEF 348 +G+ S + L K GR E Sbjct: 301 LGLSSREIAASLPKCRNSAGRGEI 324 >gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis CO72] Length = 494 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 29/254 (11%) Query: 24 QWRERKINEVS-----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 QW E+ +D+R IQAG +F+AI G + D H FI A QGA A +V Sbjct: 21 QWHHSDKAEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER--- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137 + + P L+V +T+ L HP+ ++A+TG+SGK++ + I Sbjct: 78 ------VVDCDMPQLLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEMIGAIL 131 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 QI PT I+ +N L P + L + + A+ G + Sbjct: 132 S-------QIAPT-LITRGNLNNDLGVPMML-----LELTDEHRFLVIELGANHLGEIAY 178 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 ++ N+G H+ + AK ++ L + + ++DD Y E++ Sbjct: 179 TASMVRPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFY-PELL 237 Query: 258 KRAHNAGCRVLSVG 271 K+A LS G Sbjct: 238 KQASKFTNLYLSFG 251 >gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147] gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147] Length = 443 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/329 (25%), Positives = 141/329 (42%), Gaps = 63/329 (19%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + I+A+TG++GK++ S V +CQ+SGL + G T P+ A Sbjct: 108 DQIIAITGSNGKTTTTSLVGHLCQQSGLDTVVAGNIGT--------------PVLDA--- 150 Query: 175 SYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +L QG + +E SS L+ + A + N+ DH++ + Y K + Sbjct: 151 -WLQRQGKSADVWVLELSSFQLETTPC--LAAAAAACLNISEDHLNRYDDLLDYARTKDQ 207 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +F + I+ ADD + + M R Q ++ L + A + V+ Sbjct: 208 IFNGCRTQ----ILNADDPFCR-AMHRPEQ----------QTRYFSLAQA-ADYWLDPVS 251 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 S++ +D DF+ PL G NAL A LC AIGI + +++H++ +P R E Sbjct: 252 GSLKQRDSDFMAQSQIPLQGNHNTANALAALALCEAIGIPRSELVQHIQTFKGLPHRVEK 311 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +G ++ G +Y+D + +N + + I +V GG QGK D Sbjct: 312 IG--AKDGVVYIDDSKGTN----VGATVAAIAGLPQKIVLIAGG---QGK-------GQD 355 Query: 409 LADIAIVTDDNPRS-----EDPEKIRAEI 432 A +A V D R+ D KI AE+ Sbjct: 356 FAPLASVLQDKARAVFLIGVDAPKIAAEL 384 >gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas elongata DSM 2581] Length = 455 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 156/384 (40%), Gaps = 60/384 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + +++D+R + G +FVA+VG + D H FI QA GA A +V Sbjct: 24 EVALTSITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVER----------- 72 Query: 87 RSNTPI--LVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 R + P+ L V +TR L L A RL P ++AVTG SGK++V + I RSG Sbjct: 73 RQDDPLPQLEVADTRLALGLLGRARRLAWGGP--LVAVTGNSGKTTVKQMLATILSRSGA 130 Query: 143 SSFQIG--------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G P + + + R +++ +S + V+V + G Sbjct: 131 TLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIAWTASLAMPDVAVITNVTGA 190 Query: 195 DQHRLDGIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G+ IA + L RD + YF +A Sbjct: 191 HVGEFGGMGRIAQAKGEILGGLSRDGVAVLNRDDRYFR-----------------FWASQ 233 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309 A S+EV+ + +G+ VC + T+S +G++ + L G Sbjct: 234 AGSREVLD---------FGLEDEGRLRAETLVCDEFGRYAFTLSFDGRELGRVQLALMGR 284 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD-YAHTSN 367 V NAL AA +A+ D A VL LE++ V GR F G N G R+ D Y Sbjct: 285 HNVANALAAAAAALALRADPADVLAGLEEVEPVAGRLGVFAGRN--GARLLDDTYNANPG 342 Query: 368 SLEMILKNIRTITSGRIIVVFGCG 391 +++ L+ + T+ + R ++ G Sbjct: 343 AVKAALETLATLPAPRWCLLGAMG 366 >gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-66c26] gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-76w55] gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-97b34] gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase [Clostridium difficile QCD-37x79] gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium difficile QCD-32g58] gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile CD196] gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Clostridium difficile R20291] Length = 457 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/432 (20%), Positives = 170/432 (39%), Gaps = 67/432 (15%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 LIY D+ + ++ + I DSR A FVAIVG DGH F+ A Sbjct: 17 LIYGDYNDCVSDIVI---------------DSREASAQNAFVAIVGENLDGHTFMKPAYD 61 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G + + + + ++ S+ I ++ V +T L + K + VTG+ G Sbjct: 62 SGCKTFIKNESNGIKLESSDIN----LIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVG 117 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ + ++ ++ + L + L L L+ + V Sbjct: 118 KTTTRDMIYS------------AISAKLNILKNEKNLNNHFGVPLT--LFNLNKEHECAV 163 Query: 186 SVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 +E G ++ + +D + +N+G H++ +Q+ AKM + + + Sbjct: 164 -IEMGMSGFNEIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKAKMEITSNF-DETNT 221 Query: 244 AIIYADDAYSKEVMKRAH---------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 I+ DD + + ++ H N + Y + L +C I+ K++ Sbjct: 222 LIVNGDDKFLSTLKEKEHVYKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKE---- 277 Query: 295 VEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + P GE +YNA+ A GLC+ I +D + + L+ R + + N Sbjct: 278 ------EIFIPTIGEHNIYNAMSAILVGLCLNISLD--YIKKGLKNFKGTKMRLDII-KN 328 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALD 408 + I Y + +S++ LK I GR + + G G + G R ++GK +++ Sbjct: 329 EKLTIINDSYNASPDSMDAALK-ILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMN 386 Query: 409 LADIAIVTDDNP 420 DI I +N Sbjct: 387 NTDIIITIGENS 398 >gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera aphidicola] Length = 453 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 9/123 (7%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I+E+ +++ I G +F+A++G D H+FI AI +G AI+ Sbjct: 20 KDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAIITHKH--------- 70 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 I+S+ ++V NT L A+ + + ILA+TG+ GK++V I ++ G + Sbjct: 71 IKSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEMTASILRKYGNTIS 130 Query: 146 QIG 148 IG Sbjct: 131 TIG 133 >gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Tsukamurella paurometabola DSM 20162] Length = 510 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 149/356 (41%), Gaps = 44/356 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQDFSA 84 DSR I +G +F+A+ G + DGH F AI +GA AIVV + + Sbjct: 34 DSREIGSGDLFLALPGARVDGHDFAATAIEKGAVAVLGARPVGVPAIVVPVSGETDNRVM 93 Query: 85 TIRSNT--PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + S+T V L+ + ++ ++ VTG++GK+S + + + G Sbjct: 94 ALESDTDGAGAAVLTALGDLAAYCTKSLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGE 153 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQH 197 + G SF +N + P A A + +S++G H++ A L Sbjct: 154 TVAPPG------SF--NNEIGHPWTALRATASTKFLVLEMSARGEGHIAALAK---LAPP 202 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R+ G++L N+G H+ +++A AK L E LP + A++ ADDA + Sbjct: 203 RI-GVEL------NVGTAHLGEFGSREAIARAKGELVEA-LPVDGVAVLNADDAAVAAMA 254 Query: 258 KRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 R RV+ G + + V H + T+ G + GE QV+NAL Sbjct: 255 SR---TAARVVFYGTAEAQVRATDVVLDAHARAAFTLHTAGGTAPVALKVHGEHQVHNAL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +A + + G +A V E L P R + T+ GG V+ + +N M Sbjct: 312 ASAAVGLECGATTAQVAEALSGAGAASPRRMDVFTTD--GGVTVVNDTYNANPDAM 365 >gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani DSM 16646] gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani DSM 16646] Length = 461 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 149/349 (42%), Gaps = 54/349 (15%) Query: 53 KEDG-HLFIPQAIA--QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107 KE+G +FI A +GA+ +VVSSA + ++ I+++ P V+ +L A+ Sbjct: 47 KEEGARVFIGHDAANIRGADLVVVSSAIPPTNPEYVEAIKNDIP--VIHRADMLSTLMAT 104 Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 R +AV+G GK++ S + + ++ G+S PT I D Sbjct: 105 R-------KGIAVSGAHGKTTTTSMISLVLEKGGMS-----PTVVIGGELND----IGGN 148 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQA 225 L K Y+ ++ D+ +KL TN+ DH+D+++ ++ Sbjct: 149 ATLGKG-EYMVAEA-------------DESDGSFLKLTPYIAVVTNIENDHMDHYKDMES 194 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHL 279 A R F L K+ A++ D+ + ++VMKR + G Y K IH+ Sbjct: 195 MKEA-YRKFIMNLKKDGFALLGTDNEHVRDVMKRVD---VPYFTYGINYPADYMPKNIHI 250 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + + ++ +V E + + +PG +YNA A + +G+ + L+ Sbjct: 251 E---GVDSRFEVYYRNE-RLGELELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAF 306 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 V RF+ +G G R+ DYAH ++ LK + + ++ VF Sbjct: 307 RGVQRRFQLIGEVG-GVRVVDDYAHHPTEIKATLKAAKLLNPNKLYAVF 354 >gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046] gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046] Length = 482 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 136/331 (41%), Gaps = 42/331 (12%) Query: 66 QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 QGA IVVS+A + + A I + TP++ + + + +H +AV GT Sbjct: 80 QGANVIVVSTAIDAENPEIKAAIETRTPVV------RRAEMLGELMRYRHG---IAVAGT 130 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ S V C L+ + PT I NR + + +S+ + Sbjct: 131 HGKTTTTSLVT--CM---LAEENLDPTYVIGGLL--NRTGVNAALG--------ASRFIV 175 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + E+ + L ++ +A TN+ DH+D + F + LP Sbjct: 176 AEADESDASFLH------LQPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYGL 229 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ DDA +E+M R G +++ G+ + ++ V Q +V KD + L Sbjct: 230 AVVCGDDANIREIMPR---IGRPLITYGFN-EDNDIRAVDIEQEGMQSHFTVLRKDREPL 285 Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIY 359 LPG + NAL A G+ G+ A + LE V RF+ G + GG + Sbjct: 286 RLTINLPGLHNILNALAAIGIATDEGVSDAAIARALESFSGVGRRFQVQGEFDIDGGNVK 345 Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388 + DY H +E +K R R +V+ Sbjct: 346 LVDDYGHHPKEVEATIKAARASHPDRRLVMM 376 >gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium QM B1551] Length = 460 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/321 (21%), Positives = 143/321 (44%), Gaps = 25/321 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R IQ G +++ I G + +GH F+ +AI GA V++ ++ + + ++ Sbjct: 27 IEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENGA----VATLWNKDEENPP--TD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +++VD+T L A + ++ +TG++GK++ V+ + +++++ Sbjct: 81 ISVILVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLD----TTYRVLK 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +F +N + P I L + + + + SS G + + + Sbjct: 137 TD--GNF--NNHIGMPLTI-----LRLDETHDIAVLEMGMSSRGEIEFLSNLAEPDVAII 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+ ++ AK+ + L P + ++Y D + R N ++ Sbjct: 188 TNIGESHLQDLGSRDGIAEAKLEITSGLAP--TGQLVYNGD--EPLLTSRVVNPVFETMT 243 Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + ++ + A T+S E + F P+ G+ V+NAL A + G+D Sbjct: 244 FGSSEQNDLYPSAISAEELGTTFTVSRE-TTYSFFIPVLGKHNVHNALSAIAVGHYFGLD 302 Query: 329 SALVLEHLEKLHVVPGRFEFV 349 + + + L++L + R E V Sbjct: 303 NETIAKGLKELKLTNMRMELV 323 >gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Kuenenia stuttgartiensis] Length = 484 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 41/316 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N VS DSR++ G +F AI G+ DG FI QA GA +VVS + D S Sbjct: 28 VNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQAFDAGAIGVVVSKQGGI-DISGKC--- 83 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ--I 147 P+++VD+ + L A K I+ +TG++GK++ + + LS F + Sbjct: 84 LPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKTTTKEMLYHL-----LSHFAPVV 138 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P + ++F + P I+ + G+ + A L + G+ IA Sbjct: 139 KPQKSFNNF-----IGVPLTIF---EIESKHKYGILEMGTNAPGEILRLSEI-GLPDIA- 188 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCR 266 N+ + H++ + + K + + L KE+ +Y AD+ E+ A G Sbjct: 189 VILNISKTHLEGLGSIEGVALEKGDILKNL--KENGVFVYNADNPLCCEI---ADKFGGN 243 Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVE-------------GKDFDFLFPLPGEFQV 312 +S G Q I N TI ++ + F+ +PG + Sbjct: 244 KISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRLCGVKGGGRRQFEIQLQVPGHHNI 303 Query: 313 YNALVAAGLCIAIGID 328 N L + +C A+G+D Sbjct: 304 SNCLASFAVCHALGLD 319 >gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus mobilis Nb-231] Length = 453 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 150/359 (41%), Gaps = 41/359 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I++G +FVA+ G++ DGH ++ + ++ + + P +V Sbjct: 30 DSRRIRSGELFVALTGSRADGHDYL---------SAARTAGAAAALLERAVPEPLPQWIV 80 Query: 96 DNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 + R L+ + +H I+AVTG++GK++V + I R G + Sbjct: 81 ADGRGTLAALGCWVR-EHCAATQIVAVTGSNGKTTVKEMLAAILARHG--------ATLA 131 Query: 154 SSFAQDNRLTTPSPI-YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +S +N L P + L + Y + + AS+ G + ++ G TN Sbjct: 132 TSGNYNNELGVPLTLCRLQRRHRY------AVLELGASAPGQIRRLTQWVRPSVGVITNA 185 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H+D + K LFE LP + A+I DDA++ + A C ++ G Sbjct: 186 GPAHLDGFGSVAGVARGKGELFET-LPDDGIAVINVDDAFANLWQRLARPRRC--ITFGL 242 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + ++ A Q+ + +G+ PL G NAL +A +A+ + A + Sbjct: 243 D-RRAEVRATTAADG--QLELRWDGRVLPVRLPLLGRHNQLNALASAATALALELPGAAI 299 Query: 333 LEHLEKLHVVPGRF---EFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387 LE + VPGR E +G G RI D Y SL ++ + + R +V+ Sbjct: 300 RAGLEAMRPVPGRLCWREGIG----GARILDDTYNANPASLAAAIRVLAENSQRRWLVL 354 >gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock1-4] Length = 461 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 27 ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 E+ +NE VS D+R I G +++ I G++ DGH F+ +AI GA A + ++Q+ Sbjct: 23 EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 80 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P++ V++T + L A + ++ VTG++GK+S V + Sbjct: 81 PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 132 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + F++ T +F +N + P I LS + + + + SS G + Sbjct: 133 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 183 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A TN+G H+ ++ A AK+ + L ++ +Y D + N Sbjct: 184 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 241 Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ G Y + L+ Q ++ F P+ G+ VYN L Sbjct: 242 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENIVFYLPVLGKHNVYNTL 295 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T + Sbjct: 296 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 332 >gi|58699164|ref|ZP_00373984.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] gi|58534320|gb|EAL58499.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase [Wolbachia endosymbiont of Drosophila ananassae] Length = 113 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 8/102 (7%) Query: 396 QGKRPIMGKIALDLAD------IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449 QG +M ++ L + + A VTDDN R EDP KIR +I+ P +E G R EAI Sbjct: 7 QGSLKVMEQVKLCVEEKKSWKLSACVTDDNSRDEDPAKIRHDILLHCPDALEIGGRREAI 66 Query: 450 RTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490 +++ N+ +L+VAGKG+E I+ N + S D ++I+ Sbjct: 67 EKGVDIAYNEGMILLVAGKGNEKFQIIGNQTFEFS-DVEVIK 107 >gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio africanus str. Walvis Bay] Length = 468 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + V DSR +Q G +FV + G + DGH F A+ +GA A++ D Sbjct: 22 RTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGAVAVLAQRPLPEVD------ 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 P+L+V +T K L A G ++AVTG++GK++V + Q Sbjct: 76 -GAPVLLVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKELIAQ 122 >gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis ATCC 23445] gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC 23445] Length = 467 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSREEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus mycoides Rock3-17] Length = 458 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 27 ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 E+ +NE VS D+R I G +++ I G++ DGH F+ +AI GA A + ++Q+ Sbjct: 20 EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 77 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P++ V++T + L A + ++ VTG++GK+S V + Sbjct: 78 PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + F++ T +F +N + P I LS + + + + SS G + Sbjct: 130 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A TN+G H+ ++ A AK+ + L ++ +Y D + N Sbjct: 181 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 238 Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ G Y + L+ Q ++ F P+ G+ VYN L Sbjct: 239 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENIVFYLPVLGKHNVYNTL 292 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T + Sbjct: 293 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 329 >gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga gingivalis ATCC 33624] Length = 421 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/363 (20%), Positives = 152/363 (41%), Gaps = 39/363 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R +F + G DG+ F+P A+ +GA+ +V S S Sbjct: 12 VTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDP--------QWNSEPKA 63 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV +T L A+ K I+A+TG++GK++ + + +S Sbjct: 64 IVVKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQS------------ 111 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIK-LIAGSF 209 ++ + L +L L+ L T +++ ++H + RL I G Sbjct: 112 FNALKTEGNLNN----HLGVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYI 167 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN GR H++ + + AK L+ + L K++ I +++D + + + Sbjct: 168 TNFGRAHLEGFGSFEGVIRAKSELY-QYLKKDNKCIFFSEDNSLQRELLEGYEPTYSFSL 226 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGI 327 G +G + L + +I T+++E +F L G + N +AA +CI + Sbjct: 227 EGREGANLQLSLLKSIP-----TVTLEWAGQEFSSALIGNYNATN--IAAAMCIGRYFKL 279 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386 + + +E R +FV +RG R+ +D Y +S+ ++ + + S ++ Sbjct: 280 SAEAIRRGVEGYIPTNNRSQFV-EKTRGNRVLMDAYNANPSSMHAAIEAFQALPSAHKVL 338 Query: 387 VFG 389 + G Sbjct: 339 ILG 341 >gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acaryochloris marina MBIC11017] Length = 448 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 134/334 (40%), Gaps = 42/334 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M LQ + + L Q P +++ V++D+R ++ IF+A G DGH F Sbjct: 1 MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A+ QGA A +V I + TP LVV +T + I+A+ Sbjct: 61 ESAVQQGAIAAIVDHP---------IDAATPQLVVPDTLVAYQRLGQWWRQQFQIPIIAI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG+ GK++ + + +G S + + A N + I + K L L++ Sbjct: 112 TGSVGKTTTKELISAVLGTAG---------SVLKTEANYN-----NEIGVPKTLLGLTAD 157 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + VE G + + + IA G TN+G HI +++A AK L + Sbjct: 158 H-DYAVVEMGMRGPGE--IAELSQIAQPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQ 214 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 +P ES A++ AD++ E + + G +V G Q +++ Sbjct: 215 -MPAESLAVLNADNSLLIETAQTVWS-GAQVTYGLDSGDL----------QGQLADQTLQ 262 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 D F PLPG N L A + + +D A Sbjct: 263 VADHSFPLPLPGAHNALNYLAALAIAQHLHLDLA 296 >gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia stali symbiont] Length = 453 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 9/136 (6%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +++ ++S + + I +V++D+R + G +FVA+VG + D + F AIA GA+A++ Sbjct: 7 QILAEISGGQLHGSDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALL 66 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ ++ + P +VV +TR + + + ++ +TG+SGK+SV Sbjct: 67 VNRRLAV---------DVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEM 117 Query: 133 VQQICQRSGLSSFQIG 148 I ++ G + + G Sbjct: 118 TAAILRQCGETLYTAG 133 >gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 455 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 145/371 (39%), Gaps = 52/371 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR I G +F+ + G + DGH FI A GA AI FS Sbjct: 26 LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAI----------FSEKDLPG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V++ K A K +++AVTG++GK+S + + Sbjct: 75 KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 ++T ++ + I L + ++ V H D H L I + Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263 T +G H++Y ++ KM++ + + +S I+ A D+Y E Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDSYLPE-------- 229 Query: 264 GCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V+ G + V I K +T + PLPG++ NA+VAA + Sbjct: 230 NQMVIRFGDHQEL----NVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRT 378 + + ++E LE + + R E+ + G I D Y ++ +IL+ NI Sbjct: 286 KLLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAK 344 Query: 379 ITSGRIIVVFG 389 G+ I V Sbjct: 345 NPGGKKIAVLA 355 >gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963] gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963] Length = 870 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 48/341 (14%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFS 83 ++ + S D+R I G +FVA+ G + DGH ++ AI +GA ++V + + S+ + Sbjct: 20 KQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLLVETRHIESMPEAE 79 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++V++TR+ L +AS + + I+AV G GK+S+ + + R+ Sbjct: 80 QERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMKEAIASVLSRN--- 136 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGI 202 +T S+ N L + + +L L Q V H + H+L + Sbjct: 137 ------YATFRSWKNYNDL-----LGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMV 185 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEV 256 K G TN+ Q YF + L +EL LP E + +D+ ++ V Sbjct: 186 KPHIGILTNVA-------PVQLQYFGSLEHLAKELSELLYSLPPE--GCFWLNDSDARLV 236 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFP 305 AH R +V + + ++++ N+ Q+ + EG F Sbjct: 237 EIVAHYQQQRGSAVP-DIRPLGIREI----NETQIRVGWEGLSFTLEQEGEMGTLTLASR 291 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 L G + L A + A G+ + V E LE+L + GR Sbjct: 292 LLGRQHISTMLAAYRIGRACGMSAEEVSEALEQLGPIEGRL 332 >gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016] gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 474 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 87/409 (21%), Positives = 164/409 (40%), Gaps = 57/409 (13%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 L+ + + D ++ I +++ K +S+DSR +Q G IF+A+ G K +G+ ++ Sbjct: 12 LEHMSFDDIVRAVSGKVILKGKYKGHK--NISTDSRKLQKGDIFIALKGEKFNGNEYVES 69 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A +GA +V ++ S I T I+ V N L A K I+ VTG Sbjct: 70 ASKKGASICIVD---EVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTG 126 Query: 123 TSGKSSVASFVQ-------QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + GK++ + ++ + G + QIG + F DN Y L Sbjct: 127 SVGKTTTKDIIAAVLGVKFKVFKTEGNFNNQIGLPHML--FKLDNS-------YEVAVLE 177 Query: 176 Y-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 ++ +G H V+A+ + TN+ R HI +++ NAK+ + Sbjct: 178 MGMNQRGEIHNMVKAARPDI------------AVITNVLRAHIGNLGSRKNILNAKLEI- 224 Query: 235 EELLPKESPAIIYADDAYSKEVMKR---------AHNAGCRVLSVGYQGKFIHLKKVCAI 285 + KE+ II +D+ + ++ N+ + + I KVC Sbjct: 225 TDFFSKENTLIINSDNDLLSTLEEKNFTLNRVGLGENSDVSAYDIVVEEDCIEF-KVCKN 283 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + K + FL +PG++ + N+L+A + + + E ++ + + R Sbjct: 284 NVKTEER---------FLINMPGKYNIVNSLLAISCGRLLNMSYDEIREGVKNIKLTSMR 334 Query: 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 E + + I D Y S++ + ++ S R I V G G+ Sbjct: 335 MEII--RKKEFTIINDCYNANPESMKAAIDVLKEFKSNRKIAVLGTMGE 381 >gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio metschnikovii CIP 69.14] Length = 453 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ VS+D+R I+ +F+A+VG + D H F QAI GA+A++V A + + Sbjct: 24 ISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERALDV---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 +VV NT++ L ++ + +A+TG+ GK++V V I G Sbjct: 75 VAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAKG 126 >gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 465 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 150/365 (41%), Gaps = 41/365 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 R I+ SD++ AG + + +G GH Q +A GA+ +V+S+A I Sbjct: 31 RGISVSGSDAKE-SAGLLELGALGASVHAGH--AAQNVA-GADTVVISTA---------I 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLS- 143 R+N P L T+ L S + ++AV GT GK++ + + + + +GL Sbjct: 78 RANNPELEFARTQGLRVLHRSEALAAAMAQDTVVAVAGTHGKTTTTAMIAVLLREAGLDP 137 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 SF +G T AL ++ G + V A + D L+ Sbjct: 138 SFAVGGT--------------------VPALGVNAAHGAGGIFV-AEADESDGSFLNYRP 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 IA TN DH+D++ T +A A + F L+P + + DD + + K+A Sbjct: 177 QIA-VVTNAEPDHLDHYGTAEAVMEA-FQSFIGLIPADGLLVACTDDDGALALAKQAAAR 234 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G RV++ G H + + + +PGE NAL A + + Sbjct: 235 GTRVVTYGRSAAAEVWLINDGAHRAIEFITPIGPQRLVLELQVPGEHNALNALAAFAVAL 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +G+++ L L RFEF G RG R++ DYAH + L RT+ G Sbjct: 295 ELGVEAEQALSALAGFTGAARRFEFKG-QVRGIRVFDDYAHHPTEVRAALTAARTVADGH 353 Query: 384 IIVVF 388 ++V Sbjct: 354 HVLVL 358 >gi|302391532|ref|YP_003827352.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM 5501] gi|302203609|gb|ADL12287.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM 5501] Length = 469 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 28/243 (11%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+ DH+DY+++ + + F LP + I+ DD ++++ R Sbjct: 176 GVVTNIEADHLDYYESCSEIIDTFSK-FLNSLPSDGVGIVSLDDNEIRDMVDRVD---TD 231 Query: 267 VLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +++ G K + K + + V + + + +PG+ + NAL G+ + Sbjct: 232 LITYGLNNKAEIMAKDIELQEFGSKSVIYRYQDRLGELKLNVPGKHNLSNALAVIGIGLH 291 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 IG++ + + E L+ V RFE +G RG + DYAH LE L + RI Sbjct: 292 IGLEFSKIAEALKDFTGVKRRFEKLG-KYRGAVLVDDYAHHPTELEATLAAANNMDFERI 350 Query: 385 IVVFGCGGDRDQGKRPIMGK-------IALDLADIAIVTDDNPRSEDP------EKIRAE 431 I VF Q R K +A AD I+TD E+P EKI AE Sbjct: 351 IAVF-------QPHRYTRTKFLLEEFSLAFGDADEVIITDIYASGEEPIPGVKAEKI-AE 402 Query: 432 IIH 434 +I+ Sbjct: 403 LIN 405 >gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC 27126] Length = 431 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/324 (22%), Positives = 131/324 (40%), Gaps = 61/324 (18%) Query: 43 GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102 G +++A+ G +GH FI A GA A++ S +D + ++ P+++V++T++ L Sbjct: 1 GAVYLALKGPNFNGHDFISTAEKAGASAVIAS-----EDVATSL----PVIMVEDTKEAL 51 Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 L + + +A+TG+SGK++V I +R G +T +F +N + Sbjct: 52 GLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRG------NVLATNGNF--NNDI 103 Query: 163 TTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 P + + L Y + G H+ A + L +K + N H++ Sbjct: 104 GVPLTLLRLEPQHEYAVMELGANHIGEIAYTTNL-------VKPDVATIVNAAASHLEGF 156 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 + AK +F+ L + A++ D +S+ +QGK K Sbjct: 157 GSLLGVARAKSEIFKG-LGSDGVAVVNVDSQFSEF----------------WQGKLKQTK 199 Query: 281 KVC--------AIHNKQQVTISVEG----------KDFDFLFPLPGEFQVYNALVAAGLC 322 + A + +TI ++G D +PG V NALVAA L Sbjct: 200 TLTFSPQQKNDADFRAEDITIGLDGCAAFHLVCPQGDMSIQLTIPGVHNVGNALVAAALT 259 Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346 + +G V + L + V GR Sbjct: 260 LQVGASLENVRDGLLAMKQVSGRL 283 >gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47_FAA] gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridiales bacterium 1_7_47FAA] Length = 487 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/394 (20%), Positives = 153/394 (38%), Gaps = 70/394 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI--- 86 I +S DSR ++ +FV I+G D H F+ QAI GA A+ S ++ A I Sbjct: 28 IRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNGAAAVFTSRHRQPEEVRADIIRQ 87 Query: 87 ----------RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-- 134 + + V +T+K L F + ++ +TG+ GK++ + Sbjct: 88 CGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQKLPLVGITGSVGKTTTREMIAAA 147 Query: 135 -----QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189 + + G S+ Q+G TI++ + ++ GV + + Sbjct: 148 LSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQI------------------GVIELGMSE 189 Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 R+ ++ TN+G HI+ +Q K+ + ++ + + I+ D Sbjct: 190 PGEMTRIARI--ARVDCAVMTNIGVTHIEQLGSQDNILKEKLHI-QDGMAENGSLILNGD 246 Query: 250 DAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKK----VCAIHNKQQVTISVEGKD 299 D + V+ + R + G Y+G+ +HL A+H ++VT+ + Sbjct: 247 DRLLRSVIPEGNR---RKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLR--- 300 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G V NAL A + GI LE+ GR + +GG Sbjct: 301 ------VMGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIF--TLKGGITV 352 Query: 360 VDYAHTSNSLEM-----ILKNIRTITSGRIIVVF 388 +D ++ ++ + M +L ++ +GR I V Sbjct: 353 IDDSYNASPVSMKAGLEVLGSMEPEGTGRRIAVL 386 >gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase [Gallibacterium anatis UMN179] Length = 464 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%) Query: 8 YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 + EL++ + P E ++++V++DSR G +F A+ G D H F+ Q QG Sbjct: 6 FAALSELLSAKEVNPPS-AELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQG 64 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ +VV A D + ++ P LVV NT+K L A + + + A+TG+SGK+ Sbjct: 65 AKILVVEHA----DPAVSV----PQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKT 116 Query: 128 SVASFVQQICQRSG 141 +V I Q++ Sbjct: 117 TVKEMTAAILQQTA 130 >gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece sp. PCC 7425] Length = 457 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 56/293 (19%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +D+R +Q G +F+A+ G DGH F+ +A+ QGA A + DF P Sbjct: 45 ICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGAIAAITDQVLP-GDF--------PQ 95 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 LVV +T L A + G+ + ++AVTG+ GK++ + + G Sbjct: 96 LVVKDT-----LVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTKELIAAVLGLQG------ 144 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206 S + + A N + I + K L L++ V +E GL + + + IA Sbjct: 145 ---SVLKTEANYN-----NEIGVPKTLLQLTTDHAYAV-IEMGMRGLGE--IASLTRIAR 193 Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G HI +++A AK L E +P S A++ AD+ E + Sbjct: 194 PDIAVITNVGTAHIGRLGSREAIAQAKCELLAE-MPTTSVAVLNADNPLLIETATEVWSG 252 Query: 264 GCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + LS G + HL Q + VEG+ F PLPG+ N Sbjct: 253 --KTLSYGLTAGDLRGHL---------QGDMLEVEGQCFP--LPLPGQHNALN 292 >gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila abortus S26/3] Length = 448 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 150/372 (40%), Gaps = 45/372 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ V+ DS+ ++ G +F A+ G DGH F+ QA GA A VVS Y F Sbjct: 24 KKISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGDSF----- 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 ++VV++T + L I+ +TG+ GK++ +F Q + S + Sbjct: 79 -GLELIVVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLL--SSVYRVYA 135 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P S +++LT P + +A + + + S Q L ++ Sbjct: 136 SPKSY------NSQLTVPLSLLMADG-----DEDFVILEMGVSEPKNMQDLLSIVEPEVA 184 Query: 208 SFTNLGRDHIDYHQTQ--QAYFNAKMRLF----EELLPKESPAIIYADDAYSKEVMKRAH 261 TN+ H+ Q Q K ++ +LLPK+SP + +K++ Sbjct: 185 VITNITDQHVMNFPDQGVQGIAEEKSQILCNSRVQLLPKDSP--------WYPHFIKQSM 236 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A + + + K + K V IS D DF P + N L++ L Sbjct: 237 SAEKFSFAFYDETADFYYKVI----RKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSL 292 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380 + + ++ L + P RFE + R G ++ A+ + E +L + I Sbjct: 293 AWLLDVPVDRIIHSCCDLQLPPMRFE---QSIRNGIQIINDAYNACP-EAMLAALDAIPH 348 Query: 381 ---SGRIIVVFG 389 G++I++ G Sbjct: 349 PSEGGKVILILG 360 >gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1] gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1] Length = 467 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVMRISKEKHLDRGYFADGAKLLWSQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91] gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91] Length = 862 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 22/319 (6%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AVTGT+GK++ A + I + + ++G T F + + T A + Sbjct: 471 VIAVTGTNGKTTTARLIANILEHN---RMRVGIACTDGVFVNNQCVDTGDCSGPKSARNI 527 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ--TQQAYFNAKMRL 233 L V +E + G+ + L TN+GR DH+ T + K + Sbjct: 528 LFHPDVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVKRTI 587 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNA----GCR-----VLSVGYQGK-FIHLKKVC 283 E + P++ A++ ADD + + C +L QGK I+L++ Sbjct: 588 VENVNPEKGVAVLNADDPLVLGMASHCPGSVTFFSCNSRHPVILEQRIQGKRVIYLEEQH 647 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---- 339 + + + + FQ+ N + A G +A G+D +++ L Sbjct: 648 IVVTEAGTERRISLSNIQLTKNGMISFQIENVMAAIGAGLASGLDWSIICAGLADFVSDA 707 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VPGRF N R + DY H +++E ++ I I + + VV GDR Sbjct: 708 QTVPGRFNLF--NYREATLIADYGHNPDAMEALICAIDHIPAKKRTVVISAAGDRRNEDI 765 Query: 400 PIMGKIALDLADIAIVTDD 418 + +I D+ D ++ D Sbjct: 766 RLQTQILGDVFDEVVLFQD 784 >gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2] gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2] Length = 467 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein [Bacillus megaterium DSM 319] Length = 460 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/332 (21%), Positives = 143/332 (43%), Gaps = 25/332 (7%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S+F I VS D+R IQ G +++ I G + +GH F+ +AI GA A + + Sbjct: 16 SVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENGALATLWNKD-- 73 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 ++ +++VD+T + L A + ++ +TG++GK++ V+ + Sbjct: 74 ----EENPPTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKDMVKAVLD 129 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +++++ T +F +N + P I L + + + + SS G + Sbjct: 130 ----TTYRVLKTD--GNF--NNHIGMPLTI-----LRLDETHDIAVLEMGMSSRGEIEFL 176 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + TN+G H+ ++ AK+ + L P + ++Y D + Sbjct: 177 SNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAP--TGQLVYNGD--EPLLTS 232 Query: 259 RAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R N ++ G + ++ + A T+S E + F P+ G+ V+NAL Sbjct: 233 RVVNPVFETVTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYPFFIPVLGKHNVHNALS 291 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 A + G+D+ + + L++L + R E V Sbjct: 292 AIAVGHYFGLDNETIAKGLKELKLTNMRMELV 323 >gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus parainfluenzae ATCC 33392] Length = 456 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 8/112 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++D+R +F A+ G D H ++ +A+ QGA A+VV A + + Sbjct: 25 VENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVEQGATALVVQKANT--------NIS 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 TP LVV +TR L A L K I+A+TG+SGK++V I Q++ Sbjct: 77 TPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKTTVKEMTASILQQTA 128 >gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor hydrothermalis 108] gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 76/362 (20%), Positives = 151/362 (41%), Gaps = 49/362 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G E ++ ++A S +D + + L + +FL L ++ +N++A+ GT G Sbjct: 59 HGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----RNFKNVIAIAGTHG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182 K++ S + I +++ + PT + +F + N + + +A Y+ S Sbjct: 113 KTTTTSMIGYILKKANYN-----PTILVGAFVKQLGGNFVIGSKDYLVVEACEYVDSFLK 167 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++ G N+ DH+DY + + N+ + F + +P Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSG 207 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFD 301 + DD K+++ + H +V+ + + K I + N V+ + + Sbjct: 208 FLVANCDDKNVKDIISKFHT---QVVCISTKEKADIFADNISC--NDGYYEFDVKNNNNE 262 Query: 302 FL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 L +PG VYNAL A + + ++S + + L + R E VG G Sbjct: 263 ILAHIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEFCGASRRLEKVG-EFNGIY 321 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIV 415 +Y DYAH ++ L ++ I+ G+++ +F + ++ + A L LAD IV Sbjct: 322 LYDDYAHHPTEIKATLATLKKISEGKVLAIF--QPHTFSRLKTLLNEFAESLKLADKVIV 379 Query: 416 TD 417 TD Sbjct: 380 TD 381 >gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase [Aminomonas paucivorans DSM 12260] Length = 467 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 73/432 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 V DSR + G +F A+ G + DGH F+ A+A GA A++ +L+ R++ P Sbjct: 30 VCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVL-----ALRGPGREARASLPG 84 Query: 92 -----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS--- 143 + VD+ L A + + + +TG+ GK++ + ++ S Sbjct: 85 SADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTTRDLILRVLASVEPSHGA 144 Query: 144 ----SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + +IG ST+ D R + + G H Sbjct: 145 PKSYNTRIGCASTVLGMPPDTR-------------NLVLEYGTNHPGE------------ 179 Query: 200 DGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDA 251 I + SF T + H++ Q AK+ L E +++ + Y D+A Sbjct: 180 --ISALVASFPPQELFLTEVCPAHLEGLGDVQGVLAAKLELLES---RQAERVTYNFDNA 234 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----GKDFDFLFPLP 307 ++ + + +A R L VG G + +++ + + + G+ + F L Sbjct: 235 LLRDALHASFSA-ERSLGVGVSGGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLW 293 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G Y A + + G+ + E E +PGR + + R G +D + +N Sbjct: 294 GRQHAYAWAFAWSVALRRGVGEEALREVAETSLPLPGRGRVL--SDREGLWILDETYNAN 351 Query: 368 --SLEMILKNIRTITSGRIIVVFG-CGGDRDQGK------RPIMGKIALDLADIAIVTDD 418 S+ + L+N+ ++S V + GG R+ G+ R I+GK+ + + + Sbjct: 352 PASMGVALENLHLLSSQGAGVSWAILGGMRELGETSPHWHREILGKLRGVDGAVLVGEEW 411 Query: 419 NP-RSEDPEKIR 429 P RS+ P+++R Sbjct: 412 APLRSDLPDQVR 423 >gi|82703368|ref|YP_412934.1| cyanophycin synthetase [Nitrosospira multiformis ATCC 25196] gi|82411433|gb|ABB75542.1| Cyanophycin synthetase [Nitrosospira multiformis ATCC 25196] Length = 856 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 122/303 (40%), Gaps = 38/303 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AVTGT+GK++ + I GL ++G TST + + R+ T A Sbjct: 471 VVAVTGTNGKTTTVRMIANILDCQGL---RVGMTSTDGVYIEGQRIDTGDCSGPKSARKV 527 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DYHQTQQAYFNAKMRL 233 L V +E + GL + L + TN+G DH+ Y T + K + Sbjct: 528 LLHPDVDAAVLETARGGLLREGLAFDRCDVAVVTNIGVGDHLGLSYINTVEDLTAVKRII 587 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ--- 290 + + P A++ A D + + AH G V + + V A H Q+ Sbjct: 588 VQNVKPGTGVAVLNAADPFVAGMA--AHCPG----KVTFFARDPD-NPVIAKHRAQRKRV 640 Query: 291 ------VTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEH 335 ++ EG +F++ P G FQ+ NA+ A A+G+D ++ Sbjct: 641 VYVEDDAIVAAEG-NFEYRLPFAGIPVTQNGAIAFQIENAMAAIAAGWAVGLDWQIIRGG 699 Query: 336 LEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 L + PGRF F RG + DY H +++ ++ I I + R VV Sbjct: 700 LANFVSDMQTAPGRFNFF--THRGATLIADYGHNVDAIRALVSAIDKIPAKRRSVVISGA 757 Query: 392 GDR 394 GDR Sbjct: 758 GDR 760 >gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus johnsonii ATCC 33200] Length = 455 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 81/371 (21%), Positives = 146/371 (39%), Gaps = 36/371 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 73 MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + T V G F P+ G+ V NAL A + Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383 G + + + L R ++ +G G +D + SN +R +T+ Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VRAVTTSF 345 Query: 384 IIVVFGCGGDR 394 V+ GG R Sbjct: 346 GQVMVEDGGRR 356 >gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 454 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 113/277 (40%), Gaps = 32/277 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ QQA A + F +P ++ DDA + ++ + VL+ Sbjct: 179 TNVDLDHVDFYHDQQAIDTAFIN-FMNKVPFYGMNVVCGDDAGVRRLLPQIKRP---VLT 234 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGID 328 G+ + + + + G+D + PG V NAL A G+ + GI Sbjct: 235 YGFGPDNQLRAETVTCGETSRFRVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIA 294 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387 + + L L V RFE G RGG + V DY H + L RT GR +VV Sbjct: 295 ADVCLRGLANFRGVGRRFERKG--ERGGVLVVDDYGHHPAEIAATLATARTCYPGRRLVV 352 Query: 388 FGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGN 444 R + + G A D D ++T+ P SE P I G+ G + +G Sbjct: 353 -AFQPHRFSRTKALFGDFCKAFDNVDKLLLTEIYPASEAP-------IPGVSGQSLAQGI 404 Query: 445 R------------IEAIRTAI-EMLNKQDVLVVAGKG 468 R +A+R A+ E L D+ + G G Sbjct: 405 RQVSNTDVDYFQDFDAMRAALPETLRPGDLFLTLGAG 441 >gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Edwardsiella tarda ATCC 23685] Length = 458 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 133/325 (40%), Gaps = 44/325 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R + G +F+A+ G DGH F +A GA A++VS L P Sbjct: 27 VTTDTRKLTPGCLFIALQGESFDGHDFAARACEAGAAALLVSRRLPL---------GVPQ 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +TR L A+ + + P ++A+TG+SGK+SV I + G + G Sbjct: 78 LLVADTRLALGQLAAWVRSQVPARVVALTGSSGKTSVKEMSAAILAQCGNVLYTAGNL-- 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +N + P + + + G HV A S L + + Sbjct: 136 ------NNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVALTRPH-------SALVN 182 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAY-----SKEVMKRAH 261 NL H++ + AK +F LP + AII AD D + ++ V + + Sbjct: 183 NLAAAHLEGFGSLAGVARAKGEIFSG-LPAQGTAIINADSNDWDNWQQALPTQRVWRFSP 241 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 AG G + +V + + + + PLPG + NAL AA L Sbjct: 242 QAG--------SGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLPLPGRHNIANALAAAAL 293 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346 +++G V + L LH VPGR Sbjct: 294 TMSVGASLTQVRQGLAGLHAVPGRL 318 >gi|284044723|ref|YP_003395063.1| hypothetical protein Cwoe_3270 [Conexibacter woesei DSM 14684] gi|283948944|gb|ADB51688.1| domain of unknown function DUF1727 [Conexibacter woesei DSM 14684] Length = 458 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 61/295 (20%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 ASRL PE +A++ T+GK++ A+ V + +R G T + + A N Sbjct: 47 LASRL----PEGSVAISATNGKTTTAAMVASVLERRG--------TPLVHNRAGANMAGG 94 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH---- 220 + L A + V+ G +L KL+ G NL RD +D + Sbjct: 95 IASTLLGAAQGKGIDGRLGLFEVDEFWLGGLVEQLRPRKLLLG---NLFRDQLDRYGELE 151 Query: 221 --------------QTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNA 263 + Q NA L +L +E P ++Y DD + M+ A ++ Sbjct: 152 TIADRWAEIVARHGSSTQLVLNADDPLVADL-GREQPRVVYFGVQDDTMALPQMQHASDS 210 Query: 264 G-CRVLSVGYQGKFIHLKKV----CAIHNKQQVTISVEGKDFDFL--------------- 303 CR Y+ I+L + C +++ +V G+ + Sbjct: 211 KHCRRCGHAYEYDAIYLGHLGRYHCPNCGQRRPEPAVVGERIELRGTRGARFTLRTPEGS 270 Query: 304 ----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PLPG + VYNAL AA LC+++G+ A V+ LE++ GR E + + R Sbjct: 271 ARVELPLPGLYNVYNALGAAALCLSLGVPLAEVVSGLEQVAAAFGRAETIALDGR 325 >gi|49185423|ref|YP_028675.1| Mur ligase family protein [Bacillus anthracis str. Sterne] gi|65319895|ref|ZP_00392854.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus anthracis str. A2012] gi|227814595|ref|YP_002814604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] gi|254685159|ref|ZP_05149019.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. CNEVA-9066] gi|254737610|ref|ZP_05195313.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Western North America USA6153] gi|254743209|ref|ZP_05200894.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Kruger B] gi|254751925|ref|ZP_05203962.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Vollum] gi|254760445|ref|ZP_05212469.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus anthracis str. Australia 94] gi|49179350|gb|AAT54726.1| Mur ligase family, catalytic domain, C-terminal [Bacillus anthracis str. Sterne] gi|227006794|gb|ACP16537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus anthracis str. CDC 684] Length = 99 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-----AIRTAIEML 456 MG IA +D +T DNPRSEDP+ I +I G ++E AI AI M Sbjct: 1 MGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMA 60 Query: 457 NKQDVLVVAGKGHETVHIVTN 477 + D++++AGKGHET I+ + Sbjct: 61 SSNDIVLIAGKGHETYQILKD 81 >gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Yersinia aldovae ATCC 35236] Length = 427 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 148/361 (40%), Gaps = 32/361 (8%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +FVA+ G + DGH F A V++ S + P LVV Sbjct: 4 DTRKVTPGCLFVALKGERFDGHDFAEDA---------VAAGAGALLVSKRLLVGGPQLVV 54 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +TR L A+ + + P ++A+TG+SGK+SV V I ++ G + G + Sbjct: 55 KDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAG------N 108 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 F D + P+ L L + + A+ G + D + + NL Sbjct: 109 FNNDIGV----PLTL---LRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAA 161 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275 H++ + AK +F LP + AII AD + H+ RV G Sbjct: 162 HLEGFGSLAGVAQAKGEIFAG-LPAKGTAIINADSNDWPHWQETLHHK--RVWRFAPHGA 218 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + QVT F + PLPG + NAL AA L +++G A V Sbjct: 219 EDIDFFASDVRIASQVTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC 390 E L +L VPGR + G++ +D ++ +N S+ + + + R++VV Sbjct: 279 REGLTQLQAVPGRLFPI--ELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDM 336 Query: 391 G 391 G Sbjct: 337 G 337 >gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1] gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1] Length = 466 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 25/281 (8%) Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSP 167 L G+HP + TGT GK++ +S + ++ + +G F IG + F + +R P Sbjct: 101 LEGRHP---IVATGTHGKTTTSSMLARLWEEAGWEPGFLIG--GIPADFGRGSRFPK-GP 154 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + + Y + +R + L NL DH D + +A Sbjct: 155 WVVVEGDEY-------DTAFYDKRPKFLHYRPRTLIL-----NNLEFDHADIYADLEA-I 201 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + RL +P+ +I DD +EV K A A VL G G + + ++ Sbjct: 202 RVQFRLLLRTVPRSGVVLINGDD---EEVTKLAEYACSPVLYYGIHGDYHYRARLNQKDG 258 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 I E + FD + G +YN L AA + G+ + +V LE V R + Sbjct: 259 SHWTLIKEEQELFDVAWGQVGMHNIYNGLAAASAALEHGMPAHVVKAGLEGFSGVARRLQ 318 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387 V G +Y D+AH +++ L+ +R + RI + Sbjct: 319 -VRAQLGGVTLYDDFAHHPTAIKTTLEGLRAKVGQARIWAI 358 >gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68] Length = 517 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 64/468 (13%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + TP L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TATPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K Sbjct: 182 EAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCK--- 238 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQ 290 +++ ++ AD ++ + + A AG V + V + + Sbjct: 239 -RQIIANAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEH 297 Query: 291 VTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGR 345 + + D D+ + G+F NA A + A G+ D A L +E + + GR Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIA-GR 356 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIM 402 E VDYAH S+ +L + + RI +V G G++ +R + Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416 Query: 403 GKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------GNRIEAIRTAI 453 + A + +A+ +D D E +I + G+I +R AI AI Sbjct: 417 VEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVISDRPTAITNAI 471 Query: 454 ----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 472 YDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis W23144] gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis W23144] Length = 454 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 62/347 (17%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D + I N I ++ + ++ L + S L + P Sbjct: 59 SMGIEVISGSHPFSLLDDNPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 117 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 172 Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 S G+ H+++ TN+ H+DYH+T + Y NAK Sbjct: 173 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 211 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288 ++++ + Y Y + + + N + Q + I++K + N Sbjct: 212 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 266 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ + KD LPGE + N L A I G+ +++ L + R ++ Sbjct: 267 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 319 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 +GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 320 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360 >gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555] gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555] Length = 463 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 83/379 (21%), Positives = 152/379 (40%), Gaps = 55/379 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR +Q G IF+A+ G K +G+ ++ A +GA +V ++ S I T I Sbjct: 29 ISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKGASICIVD---EVKFESEKISEFTTI 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGLSSF 145 + V N L A K I+ VTG+ GK++ + ++ + G + Sbjct: 86 IKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTKDIIAAVLGVKFKVFKTEGNFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKL 204 QIG + F DN Y L ++ +G H V+A+ + Sbjct: 146 QIGLPHML--FKLDNS-------YEVAVLEMGMNQRGEIHNMVKAARPDI---------- 186 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----- 259 TN+ R HI +++ NAK+ + + KE+ II +D+ + ++ Sbjct: 187 --AVITNVLRAHIGNLGSRKNILNAKLEI-TDFFSKENTLIINSDNDLLSTLEEKNFTLN 243 Query: 260 ----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 N+ + + I KVC + K + FL +PG++ + N+ Sbjct: 244 RVGLGENSDVSAYDIVVEEDCIEF-KVCKNNVKTEER---------FLINMPGKYNIVNS 293 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 L+A + + + E ++ + + R E + + I D Y S++ + Sbjct: 294 LLAISCGRLLNMSYDEIREGVKNIKLTSMRMEII--RKKEFTIINDCYNANPESMKAAID 351 Query: 375 NIRTITSGRIIVVFGCGGD 393 ++ S R I V G G+ Sbjct: 352 VLKEFKSNRKIAVLGTMGE 370 >gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella avium 197N] gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium 197N] Length = 508 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 21/139 (15%) Query: 98 TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157 R SL +R Y HP +LAVTGT+GK++V + +Q+ + GLS+ G Sbjct: 117 ARALASLAEARAY--HP-RLLAVTGTNGKTTVTALTRQLIEACGLSARAAGNI------- 166 Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 SP LA + L + V V E SS L+ ++ A N+ +DH Sbjct: 167 --------SPAALASLMEALDQDALPDVWVLELSSFQLETTH--SLQADAAVVLNVTQDH 216 Query: 217 IDYHQTQQAYFNAKMRLFE 235 +D+H QAY AK RL + Sbjct: 217 LDWHGDMQAYAQAKARLLK 235 >gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia muciniphila ATCC BAA-835] Length = 457 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 158/365 (43%), Gaps = 39/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSRH+ +F A+ G K DG+LF P+A ++ A A+VVS D S + Sbjct: 30 VCTDSRHLPPHAVFFALGGEKFDGNLFAPEA-SRTAAAVVVSRVEEGMDPSCA------V 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++T + L AS + ++ +TG++GK+S + + G + Sbjct: 83 ILVEDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQ--------GFRTI 134 Query: 153 ISSFAQDNRLTTPSPIYLAKAL--SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +N + P I A + + G+ H A + + ++ G T Sbjct: 135 ATQGNLNNHIGVPLSILRATPSDEAAVWEMGMNHSGELAPLCEMTRPKI-------GIIT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 ++G H++Y +++ K L LP++ I AD Y+ ++++++ A C + Sbjct: 188 SIGTSHMEYLGSRENIAREKCTL-ARCLPEDGFMIFPADCDYA-DMIRQSTRAAC--IDC 243 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + + N + +S+ DF + P+ G V NAL+AA A G+ Sbjct: 244 GIGAGTVRAENPVSTENGTRFILSI--PDFCREEVELPVHGRHMVTNALLAAAAGWAAGL 301 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTIT-SGRI 384 + L + + GR N G + VD + +N S++ L + ++ +GR Sbjct: 302 AKEQIASGLNQARLTGGRLHCTRIN---GILVVDDTYNANPDSMQAALHTVAGLSCTGRR 358 Query: 385 IVVFG 389 V G Sbjct: 359 FAVLG 363 >gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus casseliflavus ATCC 12755] Length = 449 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 150/382 (39%), Gaps = 67/382 (17%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V DSR I+ +FV + G + DGH F QA GA A + S TI Sbjct: 19 ETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69 Query: 87 RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QIC 137 + ILV V +T K A K I+A+TG++GK++ V Q Sbjct: 70 QPPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTY 129 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQ 196 + G + ++G TI +D ++ + G+ H +E S + Sbjct: 130 KTQGNHNNELGVPLTILHAPEDTQV-------------LILEMGMDHAGEIEVLSRLAEP 176 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYAD 249 A + T +G HI+ +++ AKM + L +P + P + Sbjct: 177 D--------AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLL---- 224 Query: 250 DAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 D + + + G L+ G QG + ++ Q +V G F P+ G Sbjct: 225 DPFVPNLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLG 272 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 + V NAL+A GL G+ + + E L + R ++V T G I D Y Sbjct: 273 GYNVKNALIAIGLGRHFGVSNEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPT 331 Query: 368 SLEMILKNIRTIT-SGRIIVVF 388 ++ ++L + R + GR I V Sbjct: 332 AMGLVLDSFRKLPLEGRRIAVL 353 >gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM 6724] gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM 6724] Length = 464 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 121/281 (43%), Gaps = 35/281 (12%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+DY+++ + + +++ E++ PK A++ D ++++++ N Sbjct: 177 ITNIDNDHLDYYKSLEKIKDTFLKVIEKV-PKGGFAVLNLDCENVRDIIRKIKNK--EYY 233 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVA 318 + G+ A + +++ G +FD F +PG+ + N+L A Sbjct: 234 TYGFSN---------ADFKADNIVLNLSGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSA 284 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +G+D + LE+ V R + G ++ DY H ++ L+ +R Sbjct: 285 IAVSKILGLDFETTTKALERFQGVQRRIQLKGIIEDDILVFDDYGHHPTEIKATLETLR- 343 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRA 430 + + R++VVF R + +I AL L D+ I+T+ E P + I Sbjct: 344 LYNRRLVVVFQP--HRYTRTYFLSKEIAEALSLGDVIILTEIYSAGEKPIPGVSSKNIYD 401 Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469 EI P N IEA A +L K D+L+ G G+ Sbjct: 402 EIREKYPNLEVYLVDNIIEAASKAKSILKKGDLLLTLGAGN 442 >gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103] gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103] Length = 438 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 46/283 (16%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +I+A+TG++GKS+V + V ++ + +G +Q+G I A + L P+ +Y+ Sbjct: 106 SIVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGLPAL-SLLKAPAQLYV----- 156 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLF 234 +E SS L+ +K A + N+ DH+D Y Q Y AK+R++ Sbjct: 157 -----------LELSSFQLETTH--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIY 203 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E ++ ADD + V A R +S G HL NKQQ +I Sbjct: 204 E----NAQVCVVNADDGMTMPV----RGADARCVSFGIDIGDYHL-------NKQQGSIW 248 Query: 295 VEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + K L L G+ NAL A L A+G+ + L L +P RF+ V Sbjct: 249 LRAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLV- 307 Query: 351 TNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGG 392 SRG R D T+ S E LK ++ +G + ++ G G Sbjct: 308 HQSRGVRWINDSKATNVGSTEAALKGLQ--VNGTLWLLLGGDG 348 >gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equinus ATCC 9812] Length = 454 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI A GA A FS Sbjct: 20 EFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P ++VD+ + AS K +++AVTG++GK++ + + Sbjct: 69 ERKVEGHPYILVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTKDMIAAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 S + T ++ +N + P Y A + + + V + H D H L + Sbjct: 123 STEYKTYKTQGNY--NNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSELA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257 K G T +G H+++ ++ K+++ + + +S I+ A D Y E Sbjct: 175 KPHIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDGM---DSDGILIAPADSIVDPYLPE-- 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 G V+ G G I + + +K +T + + P+PG++ NA+V Sbjct: 230 ------GQMVIRFG-DGAEISVNDLQ--ESKDSLTFTTNVINRPITLPVPGKYNATNAMV 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + I ++E LE + + R E+ + G I D Y ++ +IL+ Sbjct: 281 AAYVGKLLAISDDDIVEALENIELTRNRTEW-KKAANGADILSDVYNANPTAMRLILETF 339 Query: 377 RTI---TSGRIIVVFG 389 I + G+ I V Sbjct: 340 SKIPANSGGKKIAVLA 355 >gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis RP62A] gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis RP62A] Length = 449 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 62/347 (17%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D + I N I ++ + ++ L + S L + P Sbjct: 54 SMGIEVISGSHPFSLLDDNPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 167 Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 S G+ H+++ TN+ H+DYH+T + Y NAK Sbjct: 168 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 206 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288 ++++ + Y Y + + + N + Q + I++K + N Sbjct: 207 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 261 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ + KD LPGE + N L A I G+ +++ L + R ++ Sbjct: 262 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 314 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 +GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 315 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355 >gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 449 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K I+ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus pseudomycoides DSM 12442] Length = 458 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 37/337 (10%) Query: 27 ERKINE----VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 E+ +NE VS D+R I G +++ I G++ DGH F+ +AI GA A + ++Q+ Sbjct: 20 EKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKK--NVQNP 77 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P++ V++T + L A + ++ VTG++GK+S V + Sbjct: 78 PV----NIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLA---- 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + F++ T +F +N + P I LS + + + + SS G + Sbjct: 130 TKFKVQKTE--GNF--NNHIGLPLTI-----LSLEENTEMAVLEMGMSSRGEIEFLSKLA 180 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + A TN+G H+ ++ A AK+ + L ++ +Y D + N Sbjct: 181 RPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGL--QDGGVFVYNGDEPLLTNRVPSMN 238 Query: 263 AGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++ G Y + L+ Q ++ F P+ G+ VYN L Sbjct: 239 LAAETITFGDARANNYYPTSVTLQATGTYFKMNQ------DENVVFYLPVLGKHNVYNTL 292 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + G+ + + L L + R E V T + Sbjct: 293 ASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTEN 329 >gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phascolarctobacterium sp. YIT 12067] Length = 454 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 42/355 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR ++ G +FVA+ G+ DGH + +A+ GA +VVS + S Sbjct: 23 VTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVS-----HEVSGLPAGVAVF 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V D + L + K + A+TG++GK+S + + S + T Sbjct: 78 MVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLL------AACLSCKYNVVKT 131 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA----G 207 +F +N + P + LS + T ++ VE GL Q + + IA G Sbjct: 132 QGNF--NNEIGLPKTL--------LSIKPDTDIAVVEMGMRGLGQ--IAELCRIAEPDSG 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H++ + + AK + LP++ A++ D+ Y V+ A +V Sbjct: 180 LITNVGETHMELLGSMENIGKAKSEIVLN-LPEDGFAVLNGDNEY---VLPAADKTKAKV 235 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + G G+ + + + T + G+ + L GE VYNAL A Sbjct: 236 VYFGL-GENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAIAGAF 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNI 376 G+ A+ + L + R E V G +++ A+ ++ S+E LK + Sbjct: 295 CYGVPMAVSAQALATARLTGSRQEIV---YIGDITFINDAYNASPASMEAALKTL 346 >gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21193] Length = 449 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K I+ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Exiguobacterium sibiricum 255-15] Length = 439 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + ++DSR I +++ I G + DGH FI A+AQGA A + L + T Sbjct: 19 RALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAIATLWKKGIPLPEMDIT-- 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 +L V++ + L + A R + ++A+TG++GK+S ++ + ++S Sbjct: 77 ----VLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTKDMIESVLKQS 125 >gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MW2] gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH70] gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MW2] gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 449 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K I+ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium BAL199] Length = 475 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/321 (21%), Positives = 133/321 (41%), Gaps = 20/321 (6%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ + + V+ D+R +Q G +FVA+ G + DGH ++ QA+ GA A +VS A Sbjct: 22 RDWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQTGASAALVSR------RPAD 75 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ P+L+V + L+ + I AVTG+ GK+ + G Sbjct: 76 LAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKTGSKEMLAAALAAYG---- 131 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T+ S +N + +P+ LA+ S ++ V + + RL ++ Sbjct: 132 ----TTHASKGNLNNHIG--APLSLAR-FSRDAAFAVFELGMNHPEEIRPLSRL--VRPH 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A TN+ H + + +AK +F+ L P + + + + + A Sbjct: 183 AALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHAGRLAIE 242 Query: 266 RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R++ G L + H +V + G+ + G N+L A +A Sbjct: 243 RIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGVAATLLA 302 Query: 325 IGIDSALVLEHLEKLHVVPGR 345 +G+D A+ + L ++ + GR Sbjct: 303 LGLDPAIGMAALGRVTAMRGR 323 >gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2] Length = 466 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 143/359 (39%), Gaps = 46/359 (12%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 S+ IR + P LV R L AS + GK +AV GT GK++ S Sbjct: 77 ISSAIRKDNPELVEAERRGLRILHRSGALASLMAGK---RAVAVAGTHGKTTTTSMTTVA 133 Query: 137 CQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 Q GL SF IG +S+ + L T +++A+A D Sbjct: 134 LQACGLDPSFVIG--GVLSTTGTNAHLGT-GDVFVAEA---------------------D 169 Query: 196 QHRLDGIKLI----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 + DG L+ G TN+ DH+DY+ T + A + + I ADD Sbjct: 170 ES--DGSFLLYEPTIGILTNVEADHLDYYGTPEKVREAFVEFCAGIGADGGTVIACADDP 227 Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGE 309 S +V ++A G V+ G + + L+++ + ++ + + + + PG Sbjct: 228 GSLDVAQQARAQGTSVILYGTSESADVRLRELQSGLVSEFVLDVPGQAEPLPVALRQPGT 287 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 NA A + ++G D A L RFE G + G R+ DYAH L Sbjct: 288 HNALNATAAIAVAHSLGADVAKAASGLGGYGGTRRRFEERGIAA-GVRVIDDYAHHPTEL 346 Query: 370 EMILKNIRTITS--GRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 +L R + + GR+ +F R R G+ AL LAD +V D P EDP Sbjct: 347 RAVLSAARGVVTDEGRVWAIFQPHLYSRTMEFRTEFGE-ALGLADEVVVLDVFPAREDP 404 >gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 428 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 69/354 (19%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +I V DSR +Q G +F AI +G+ +I + +GA A+V++ Y D Sbjct: 19 EKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA-ALVIADNYKGND---- 69 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V++T K + A + ++A+TG++GK++ + + + +++ Sbjct: 70 ----KRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAK 125 Query: 146 QIGPTSTISSFAQDNRLTTPSPIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +G +N + P I A+ L G + + +S D Sbjct: 126 TMGNL--------NNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPD----- 172 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G TN+G H+++ +T++ F AK L + + + I++ DD + K++ Sbjct: 173 -----IGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN--LIVFGDDPFLKDL---- 221 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFD-----FLFPLPGEFQV 312 + VGY+ +N Q+ T S EG F+ + L G+ Sbjct: 222 -----NGIKVGYEN-----------NNNYQIKNFTDSDEGLSFEMEEKKYTVSLNGKHNC 265 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 N +A + +G+ + L+ L + P RF+ + + IY++ A+ + Sbjct: 266 INTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI---EKENIIYINDAYNA 316 >gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii NCC 533] Length = 455 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 36/371 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 73 MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + T V G F P+ G+ V NAL A + Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383 G + + + L R ++ +G G +D + SN + ++ +T+ Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPIA-----VKAVTTSF 345 Query: 384 IIVVFGCGGDR 394 V+ GG R Sbjct: 346 GQVMVEDGGRR 356 >gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis 1330] gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis ATCC 25840] gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella canis ATCC 23365] gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis ATCC 23457] gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 3 str. Tulya] gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis bv. 5 str. 513] gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis bv. 3 str. 686] gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella neotomae 5K33] gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis bv. 3 str. Ether] gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 2 str. 63/9] gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4 str. 40] gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae 5K33] gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5 str. 513] gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3 str. 686] gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 3 str. Ether] gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis 1330] gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC 25840] gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis ATCC 23365] gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella melitensis ATCC 23457] gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4 str. 40] gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya] gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae 5K33] gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5 str. 513] gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3 str. 686] gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 3 str. Ether] gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis bv. 2 str. 63/9] gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis M28] gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella melitensis M5-90] Length = 467 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185] Length = 448 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 69/354 (19%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +I V DSR +Q G +F AI +G+ +I + +GA A+V++ Y D Sbjct: 39 EKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA-ALVIADNYKGND---- 89 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ V++T K + A + ++A+TG++GK++ + + + +++ Sbjct: 90 ----KRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTTTKDMIYSVLSQKYVTAK 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +G +N + P I A+ L G + + +S D Sbjct: 146 TMGNL--------NNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSSIVEPD----- 192 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G TN+G H+++ +T++ F AK L + + + I++ DD + K++ Sbjct: 193 -----IGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAEN--LIVFGDDPFLKDL---- 241 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFD-----FLFPLPGEFQV 312 + VGY+ +N Q+ T S EG F+ + L G+ Sbjct: 242 -----NGIKVGYEN-----------NNNYQIKNFTDSDEGLSFEMEEKKYTVSLNGKHNC 285 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 N +A + +G+ + L+ L + P RF+ + + IY++ A+ + Sbjct: 286 INTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKI---EKENIIYINDAYNA 336 >gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Paenibacillus vortex V453] Length = 472 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR IQ G +FV IVG K DGH F +A GA A A+ +D + Sbjct: 27 IQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASGAGA-----AFWQRDHQPV--PD 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 P+++V++T L A+ + ++ +TG++GK++V V + + + Sbjct: 80 LPLILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKDMVSALLETT 130 >gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL 07-0026] gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL 07-0026] Length = 467 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 269-3] gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Lactobacillus jensenii 1153] gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US] gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus jensenii 208-1] Length = 455 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 41/301 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V+ DSR + +FV + G + DGH FI AIA GA A + + + N Sbjct: 24 ISSVAFDSRKLNENSLFVPLKGER-DGHDFINSAIANGAVATLWEKGHPNK------PGN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ VD+T + A K ++ +TG++GK++ V + + F + Sbjct: 77 FPLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDG-IKL 204 T ++F +N + P ++ L + T + V G+D+ H L +K Sbjct: 133 TQ--ANF--NNEIGVP--------MTILEMKPTTEILV--LEMGMDRAGQLHHLSSLVKP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 T +G HI++ ++ +AKM + + L KE IY D + +RA Sbjct: 179 DVCVITMIGEAHIEFFGSRDKIADAKMEITDFL--KEDGEFIYNGD--EPLLRQRAEKIT 234 Query: 265 CRVLSVGYQGK-FIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 + G+ + IH L+ +H+ VT S E K F P+ G+ V NA+ A +C Sbjct: 235 QVKSTFGFSDQDTIHALEFKSYMHHASFVTNSSEQK---FSIPMIGKHNVSNAM--AAIC 289 Query: 323 I 323 + Sbjct: 290 V 290 >gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium phaeobacteroides BS1] Length = 478 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 70/348 (20%), Positives = 138/348 (39%), Gaps = 47/348 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I G IFVA+ G + DGH F+ QA +GA +VS + + S+ + LV Sbjct: 41 DSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARYLVT 100 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 +T + + A+ K ++ + G++GK++ + + + + + +S Sbjct: 101 ADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLR----ARYSV----HMSE 152 Query: 156 FAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGIKLIA 206 +N L P ++ + ++ G+ H + A +HG+ Sbjct: 153 GNFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTHGM------------ 200 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----- 261 TN+G +H+++ + NA+ L+ + ++S +++ + S+ A Sbjct: 201 --LTNIGHEHLEFLRDLDGVANAETALYRYV--QKSGGVVFVNREDSRLTEAAAGIPSTV 256 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + G+ + I + + + T+ + G V NA+ AA + Sbjct: 257 GYGIALEGEGFWAEDIRMDNL----GRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATV 312 Query: 322 CIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN 367 G+ + LE+L G R EF GG V+ + +N Sbjct: 313 GFHFGLTQEEIAGGLERLKPEEGWKRLEF---QRAGGITIVNDTYNAN 357 >gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp. 83/13] gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13] gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF 2653] gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13] gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF 2653] Length = 467 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWSQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] Length = 856 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 35/312 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + I SGL ++G T T + Q R+ Sbjct: 460 TMFADGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIQGERI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ Y Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574 Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271 + + K + + + P P ++ DA V AH+ ++ Sbjct: 575 INSVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPDQPAMATHR 634 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324 QGK F+ ++ A +V I++ PL FQV NA+ + A Sbjct: 635 AQGKRVVFVDGAEIVAGEGDAEVRIALAE------IPLTRNGTIGFQVENAMSSIAAAWA 688 Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +GID +++ L PGRF + RG + DY H +++ + I +I Sbjct: 689 LGIDWSVIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAILALCNAIESIP 746 Query: 381 SGRIIVVFGCGG 392 + R +VV G Sbjct: 747 AKRRVVVISGAG 758 >gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 1 str. 9-941] gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella melitensis biovar Abortus 2308] gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus S19] gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus str. 2308 A] gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 6 str. 870] gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 4 str. 292] gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus bv. 9 str. C68] gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus NCTC 8038] gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 9 str. C68] gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 5 str. B3196] gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus bv. 1 str. 9-941] gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine nucleotide-disulphide oxidoreductase, class I:Folylpolyglutamate s [Brucella melitensis biovar Abortus 2308] gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella abortus S19] gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus str. 2308 A] gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus NCTC 8038] gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292] gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870] gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 9 str. C68] gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus bv. 5 str. B3196] Length = 467 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus epidermidis FRI909] Length = 449 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 83/347 (23%), Positives = 145/347 (41%), Gaps = 62/347 (17%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + ++ L + S L + P Sbjct: 54 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAP- 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVK----SDEYLITEL 167 Query: 175 SYLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 S G+ H+++ TN+ H+DYH+T + Y NAK Sbjct: 168 SSFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAK 206 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNK 288 ++++ + Y Y + + + N + Q + I++K + N Sbjct: 207 KQIYKNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNG 261 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ + KD LPGE + N L A I G+ +++ L + R ++ Sbjct: 262 IRI---INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQY 314 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 +GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 315 IGTN-RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355 >gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 466 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR+I+ G FV ++GNK DGHLF+ + +G +A +S +D + I Sbjct: 30 VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFIS-----KDCNLAIPEELLY 84 Query: 93 LVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 VD+T++ L+ RL+ ++AVTG++GK++ + + P Sbjct: 85 WQVDDTQEAYQKLAFLHRRLFSIP---VVAVTGSAGKTTTRELIHS----------SLVP 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQ-HRLDGIKLI- 205 + + + +N P L KA V H + +E + GL Q RL Sbjct: 132 LGEVLATSNNNNNDIGVPFTLLKA-------NVNHSAIVLEMAMRGLGQIERLSKCACPD 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 TN+G HI ++Q +AK + + P Sbjct: 185 IAVITNIGSSHIGLLGSKQNIASAKCEIAAHMNPN 219 >gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M490/95/1] gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti B1/94] gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti B1/94] gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M490/95/1] gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti B1/94] gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M490/95/1] Length = 467 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 83/400 (20%), Positives = 160/400 (40%), Gaps = 80/400 (20%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ + +S DSR ++ +FV IVG + D H F+ QAIA GA + S + +D A + Sbjct: 23 DQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGAAVVFTSEHHCGEDVKACV 82 Query: 87 RS-------------NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 R + V +T+K L S ++ +TG+ GK++ + Sbjct: 83 RQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSLPLVGITGSVGKTTTREMI 142 Query: 134 QQ-------ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + + + G S+ Q+G TI+ Q + GV + Sbjct: 143 AEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEI------------------GVIELG 184 Query: 187 VEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S + R+ + ++ TN+G HI+ +Q+ K+ + +E +P E Sbjct: 185 M---SEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHI-QEGMPPEGILF 240 Query: 246 IYADDAYSKEVMKRAHNAGCRVL-----SVGYQGKFIHLKK----VCAIHNKQQVTISVE 296 + DD V+ + +VL Y+ + +HL++ A+H +V + ++ Sbjct: 241 LNGDDPLLASVVPKEGRK--KVLYGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLK 298 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-- 354 + G V NA+ A + G+ +EK + G+F+ G R Sbjct: 299 ---------VMGSHMVSNAMAALAVADTYGLS-------MEKAALALGQFK--GYKGRQQ 340 Query: 355 ----GGRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVF 388 GG +D ++ ++ + M L+ + ++ R I V Sbjct: 341 IFEWGGVTVIDDSYNASPVSMKAGLEVLDSVKGERKIAVL 380 >gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus saanensis SP1PR4] Length = 471 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 97/373 (26%), Positives = 157/373 (42%), Gaps = 45/373 (12%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S DSR + AG +F A++G + DGH F+ A+ GA A VVS + + SA + + Sbjct: 28 SIDSRTVGAGELFFAVMGERFDGHEFVKTALEAGAVAAVVSMRWVV---SAEVDPCKLLR 84 Query: 94 VVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 V D LS A + ++ VTG++GK++ V + + F++ Sbjct: 85 VPDGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKTTTKECVAAVLA----AKFKV--- 137 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 S+ +N P + + ++ G+ H A+ + + Sbjct: 138 -LKSAGNLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAKIAEPDW-------AV 189 Query: 209 FTNLGRDHIDYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 +N+ H+++ + AK L + LP A + ADD + H A Sbjct: 190 VSNVAAVHLEFFADGMEGIARAKKELVDA-LPAAGVAFLNADDVFVS-TFGEGHEARMFG 247 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFL---FPLPGEFQVYNALVAAGL 321 LS + + +K V + Q QVT + EG+ D + L GE VYNAL A Sbjct: 248 LSETADVRGVEVKNV-GLEGMQFVVQVT-AREGRVADKMRARIALLGEHNVYNALAA--- 302 Query: 322 CIAIGIDSALVL-EHLEKL-HVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 IA+G++S + L E + L VVP R E + G R+ D Y +LE ++ + Sbjct: 303 -IAVGLESGMTLGECVFALDSVVPSDKRGEMI--EWHGARLINDSYNSNPRALEAMVDAL 359 Query: 377 RTITSGRIIVVFG 389 I GR IV+ G Sbjct: 360 MAIEGGRHIVIAG 372 >gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str. Cudo] gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis M163/99/10] gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis B2/94] gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M644/93/1] gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti M13/05/1] gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella pinnipedialis M292/94/1] gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp. F5/99] gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M13/05/1] gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M163/99/10] gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis B2/94] gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M644/93/1] gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99] gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M292/94/1] gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str. Cudo] gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M13/05/1] gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti M644/93/1] gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis B2/94] gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M163/99/10] gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99] gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella pinnipedialis M292/94/1] Length = 467 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 453 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +V++DSR I +F+A+ G + D H F A+ GA AI+V+ L N Sbjct: 24 IEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVLAGASAILVNRQLPL---------N 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P L+V++T L + + + ++A+TG+SGK+SV I ++ G Sbjct: 75 IPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKTSVKEMTASILRQCG 126 >gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1] gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1] Length = 488 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 54/326 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 Q A+ +VVS+A + Q+ I +V L R +G +A+ GT G Sbjct: 78 QQADVVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAELMRYR-HG------VAIAGTHG 130 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ S + + ++G +F IG ++S + RL T S +A+A S+L Q Sbjct: 131 KTTTTSLIASLYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADESDASFLHLQ 187 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V TN+ DH+D + + F LP Sbjct: 188 PMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----VTISV 295 A++ DD +E+M R +++ G++ V A++ QQ T+ Sbjct: 225 YGVAVVCIDDPVVREIMPRISR---HIVTYGFRDD----ADVQALNFSQQGHQCRFTVRR 277 Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TN 352 +GK D D L LPG+ V NAL A + ID + +++ L + + RF+ +G Sbjct: 278 KGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFAT 337 Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIR 377 +G + V DY H + + +K R Sbjct: 338 PKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus epidermidis M23864:W2(grey)] Length = 454 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + + L + S L + P Sbjct: 59 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 117 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 118 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 172 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G+ E H I +I TN+ H+DYH+T + Y NAK +++ Sbjct: 173 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 215 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292 + + Y Y + + + N + Q + I++K + N ++ Sbjct: 216 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 269 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + KD LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 270 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 323 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 324 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 360 >gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus epidermidis VCU045] Length = 449 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 54/343 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPI-----LVVDNTRKFLSLFA----SRLYGKHPE 115 + G E I S +SL D I N I ++ + + L + S L + P Sbjct: 54 SMGIEVISGSHPFSLLDDDPIIVKNPGIPYTVSIIKEAANRGLKILTEVELSYLISEAP- 112 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKAL 174 I+AVTGT+GK++V S + + Q+S L+ G ++S AQ+ + S YL L Sbjct: 113 -IIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKVAQEVK----SDEYLITEL 167 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S G+ E H I +I TN+ H+DYH+T + Y NAK +++ Sbjct: 168 SSFQLLGIE----EYKPH---------IAII----TNIYSAHLDYHETLENYQNAKKQIY 210 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVT 292 + + Y Y + + + N + Q + I++K + N ++ Sbjct: 211 KNQTKDD-----YLICNYHQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRI- 264 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + KD LPGE + N L A I G+ +++ L + R +++GTN Sbjct: 265 --INTKD----LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTN 318 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 319 -RTNKYYND-SKATNTLATQF----ALNSFDQPIIWLCGGLDR 355 >gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989] gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989] Length = 440 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 52/270 (19%) Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPT 150 V N + + + + Y K+ + AVTGT GK++V + + ++ Q+ L + IG Sbjct: 81 FVEQNAKIYTEIEVAYRYAKNFD-YAAVTGTDGKTTVTTLLFEMLNRQKKSLVAGNIG-- 137 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AG 207 +P+ AL Y + +V++E L +L GI+ Sbjct: 138 ---------------TPL-CELALEYTDTN--YNVALE-----LSNFQLLGIETFRPHVS 174 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY-----SKEVMKRAHN 262 + TNL DH+DY + +AYF +KMR++E ADD + + V+K A N Sbjct: 175 TVTNLAPDHLDYMDSLEAYFESKMRIYEN---------TNADDYFIRNVDDENVVKYAQN 225 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321 C V+ + K + L K Q + + F + GEF NA++A+ + Sbjct: 226 IPCHVIDFSLKRKDVDLYK------DDQYAYYKDTQLFKLSDLKIVGEFNCGNAMMASCM 279 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +G+ + E + + V R E+V T Sbjct: 280 AYLMGVSLFNIQEVIREFSGVEHRIEYVDT 309 >gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 465 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 46/245 (18%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E KI V DSR + G +++ I G K +GH ++ QAIA GA+A++ Sbjct: 24 EEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANGAKAVLWERK---------- 73 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +++V++T K L A + ++ +TG++GK+S + + Q + Sbjct: 74 EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKDILASLLQEHYI 133 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQ----- 196 + +G +N + P L+ LS S+ V +E L + Sbjct: 134 TQKTLG--------NYNNEIGVP--------LTLLSLSENVEAAVIEMGMENLGELSFLT 177 Query: 197 HRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H ++ I +I +N+G H++ +T + AK+ + E L KE IY D +E Sbjct: 178 HMVEPDIAII----SNVGTAHLENLKTMENIAKAKLEIVEGL--KEHGLFIYNGD---QE 228 Query: 256 VMKRA 260 +++ A Sbjct: 229 ILQNA 233 >gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Desulfovibrio magneticus RS-1] Length = 466 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 13/122 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + G +FV I G + DGH F +A+++GA A++ A + Sbjct: 26 IEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSKGAAAVLADRPL------AGLPEG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 TP+L+V +T L A + ++AV+G++GK++V I + +GP Sbjct: 80 TPVLLVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVKELTAAILAK-------VGP 132 Query: 150 TS 151 T+ Sbjct: 133 TA 134 >gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus] Length = 450 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 455 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 142/370 (38%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR I G +F+ + G + DGH FI A GA A FS Sbjct: 26 LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAT----------FSEKELPG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V++ K A K +++AVTG++GK+S + + Sbjct: 75 KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 ++T ++ + I L + ++ V H D H L I + Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263 T +G H++Y ++ KM++ + + +S I+ A D Y E + Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDPYLPE-----NQM 232 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R G + L K +T + PLPG++ NA+VAA + Sbjct: 233 VIRF------GDYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGK 286 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRTI 379 + + ++E LE + + R E+ + G I D Y ++ +IL+ NI Sbjct: 287 LLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAKN 345 Query: 380 TSGRIIVVFG 389 G+ I V Sbjct: 346 PGGKKIAVLA 355 >gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea ananatis AJ13355] Length = 438 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 122/282 (43%), Gaps = 46/282 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G +Q+G I A + L P+ +Y+ Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGLPAL-SLLKAPAQLYV------ 156 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 +E SS L+ +K A + N+ DH+D Y Q Y AK+R++E Sbjct: 157 ----------LELSSFQLETTH--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 204 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ ADD + V A R +S G HL NKQQ +I + Sbjct: 205 ----NAQVCVVNADDGMTMPV----RGADARCVSFGIDIGDYHL-------NKQQGSIWL 249 Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 K L L G+ NAL A L A+G+ + L L +P RF+ V Sbjct: 250 RAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLV-H 308 Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGG 392 SRG R D T+ S E LK + +G + ++ G G Sbjct: 309 QSRGVRWINDSKATNVGSTEAALKGLE--VNGTLWLLLGGDG 348 >gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 455 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 142/370 (38%), Gaps = 50/370 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR I G +F+ + G + DGH FI A GA A FS Sbjct: 26 LNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFENGAVAT----------FSEKELPG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P L+V++ K A K +++AVTG++GK+S + + Sbjct: 75 KPHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTKDMISAVL------------ 122 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208 ++T ++ + I L + ++ V H D H L I + Sbjct: 123 STTYKTYKTQGNYN--NEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIARPRIAV 180 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVMKRAHNA 263 T +G H++Y ++ KM++ + + +S I+ A D Y E + Sbjct: 181 LTLVGEAHLEYFGSRDKIAQGKMQIVDGM---DSNGILIAPGDSIIDPYLPE-----NQM 232 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R G + L K +T + PLPG++ NA+VAA + Sbjct: 233 VIRF------GDYQELNVTDIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGK 286 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRTI 379 + + ++E LE + + R E+ + G I D Y ++ +IL+ NI Sbjct: 287 LLAVADEDIIEALESVQLTANRTEWKKA-ANGADILSDVYNANPTAMRLILETFANIAKN 345 Query: 380 TSGRIIVVFG 389 G+ I V Sbjct: 346 PGGKKIAVLA 355 >gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf0-1] Length = 455 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I+AG +F+A+ G + DGH ++ + A+GA A +V + S P Sbjct: 28 VSIDSRAIKAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVA--------DSTLPQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 L+V +TR+ L + + + AVTG+SGK++V + I + G Sbjct: 80 LLVKDTRQALGQLGALNRAAFTKPVAAVTGSSGKTTVKEMLASILRTRG 128 >gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia sp. Ch1-1] Length = 470 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 154/379 (40%), Gaps = 44/379 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR G +FVAI G++ D H F+P A+ A + S + QD+ N P Sbjct: 29 ISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAALAS--RTPQDW------NVPT 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A K ++AVTG++GK++V + I + + ++ +T Sbjct: 81 LQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL---AT 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +F +N + P ++ A L+ V + + D ++ + N Sbjct: 138 AGNF--NNDIGLPLTLFRLHAAHQLA---VVELGMNHPGETSDLAKI--AEPTVAVVNNA 190 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---------KEVMKRAHNA 263 R+H ++ T +A + L P + A+ ADDAY+ +M A N+ Sbjct: 191 QREHQEFMATVEAVALEHASVIHALSP-QGIAVFPADDAYASIWRVAATGNRIMDFALNS 249 Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 R +G F ++ + +VT+ V G+ +NAL A Sbjct: 250 AERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVL-----------GDHNAHNALAATSAA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFE----FVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 +A G+ + LE V GR + +GT + I Y +S+ + + Sbjct: 299 LAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLAP 358 Query: 379 ITSGRIIVVFGCGGDRDQG 397 + R++V+ G D G Sbjct: 359 RPAPRVLVMGDMGEVGDNG 377 >gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter vinelandii DJ] Length = 455 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 28/241 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +DSR I++G +FVA+VG + DGH F+ + A+GA A +V Sbjct: 26 DSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAVAALVQRTMP--------ELGL 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L V +TR L S + + AVTG+SGK++V + I + GP Sbjct: 78 PQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEMLASILRTR-------GPV 130 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGS 208 +T + +N L P L L+ + V V + AS G + + + Sbjct: 131 LATRGNL--NNDLGVP------LTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQVAI 182 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN G H+ + AK + E LP + A++ DD +RA AG RVL Sbjct: 183 ITNAGTAHVGEFGGPEKIVEAKGEILEG-LPADGIAVLNRDDPAFDIWQRRA--AGRRVL 239 Query: 269 S 269 S Sbjct: 240 S 240 >gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 487 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 45/279 (16%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162 L A+ + G H + +LA GT GK+S S Q +GL SF IG Q NR Sbjct: 106 LLAALMEG-HTQVLLA--GTHGKTSTTSMAVSAMQHAGLDPSFAIG--------GQLNRA 154 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T ++ G T + A + D L IA TN DH+DY + Sbjct: 155 GT-------------NAHGGTGEAFVAEADESDASLLRYSPDIA-VITNAEPDHLDYFHS 200 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------- 274 AYF + + P ++ A+D ++ E+ ++A + G V +GY G Sbjct: 201 ADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINV--IGYGGAEKARTTS 258 Query: 275 ----KFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + ++ A V +S+ G + + +PG V N++ A + G + Sbjct: 259 VPLAATLTAEETTAAGMACTVQLSLPGVEESVSYQLQIPGHHMVLNSMAALIAGVLSGGE 318 Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGG--RIYVDYAH 364 + + E L V RFE+ G+ + +GG R++ DYAH Sbjct: 319 PSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAH 357 >gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens ATCC 49725] gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens ATCC 49725] Length = 487 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 45/279 (16%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162 L A+ + G H + +LA GT GK+S S Q +GL SF IG Q NR Sbjct: 106 LLAALMEG-HTQVLLA--GTHGKTSTTSMAVSAMQHAGLDPSFAIG--------GQLNRA 154 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T ++ G T + A + D L IA TN DH+DY + Sbjct: 155 GT-------------NAHGGTGEAFVAEADESDASLLRYSPDIA-VITNAEPDHLDYFHS 200 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------- 274 AYF + + P ++ A+D ++ E+ ++A + G V +GY G Sbjct: 201 ADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINV--IGYGGAEKARTTS 258 Query: 275 ----KFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + ++ A V +S+ G + + +PG V N++ A + G + Sbjct: 259 VPLAATLTAEETTAAGMACTVQLSLPGVEQSVSYQLQIPGHHMVLNSMAALIAGVLSGGE 318 Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGG--RIYVDYAH 364 + + E L V RFE+ G+ + +GG R++ DYAH Sbjct: 319 PSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAH 357 >gi|226357935|ref|YP_002787675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase); Mur ligase family protein; Cyanophycin synthetase [Deinococcus deserti VCD115] gi|226320178|gb|ACO48171.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide synthetase); putative Mur ligase family protein; putative Cyanophycin synthetase [Deinococcus deserti VCD115] Length = 724 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 35/329 (10%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 LF S + P ILA+TGT+GKS+ A V I +G +G T+T + D R+ Sbjct: 318 LFPSGSRSRIP--ILALTGTNGKSTTARMVAHILAHAG---HTVGFTNTSGVYVADKRIH 372 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 + A L VT +E + GL + L + G+ N+ DH+ Sbjct: 373 SGDATGPKSARMVLRHPAVTVAVLETARGGLLREGLGFDRADVGAVLNVKSDHLGLGGVN 432 Query: 224 QAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIH 278 A+++ L ++ +++ ADD + M+R + S+ G + H Sbjct: 433 TVRDLARVKSLVVRVVASSGLSVLNADDPLTLG-MRRVARGRIALFSISGLDGNKALRDH 491 Query: 279 -----LKKVCAIHNKQQVTISVEGKDFDFLF---PLP------GEFQVYNALVAAGLCIA 324 L VC V +G + L +P F V NAL AA +C+ Sbjct: 492 IDAGGLAVVCEPQADGDVIAVYDGGERQSLMRAADIPATLGGLARFNVENALAAAAMCLG 551 Query: 325 IGIDSALVLEHL----EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIR 377 + + ++ L PGR ++ G R+ +DYAH ++L +L +R Sbjct: 552 LDLTLEVIRSALTTFTSSFEQSPGRLNV--HDAHGFRVILDYAHNPDALAAQRALLHRLR 609 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + GR+I + GDR +G+IA Sbjct: 610 S-PGGRLIGMVSVPGDRRDDDIREVGEIA 637 >gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2] gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2] Length = 472 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 155/385 (40%), Gaps = 60/385 (15%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 + I+ VTGT GK++ +S + + ++GL SF IG ++ F + R+ Sbjct: 115 KKIILVTGTHGKTTTSSLMAHVLNQAGLDPSFMIG--GIVTDFNSNYRIG---------- 162 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLI--AGSFT---NLGRDHIDYHQTQQAYF 227 G ++ +E + D D G K + A FT + DH D + Sbjct: 163 -------GGDYIVIEGDEY--DTAFFDKGPKFMHYAPCFTIMTGVEFDHADIFRDLDHVR 213 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCA 284 + LLP ES I + DD KE++ A+N R+ G+ + + I LK Sbjct: 214 QIFAAFVKGLLP-ESMTIAWGDDMNLKEILAHANN---RIQRYGHGPGEWQCIDLKV--- 266 Query: 285 IHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 +Q ++ EGK F PL G+ V NAL + I I ++ L Sbjct: 267 ---EQGTSVFRIKDPEGKILRFAIPLMGDHNVMNALAVIAVARQINIPVDVLARALVSFS 323 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKR 399 V R E G RG + D+AH ++ L+ +R T GRII VF + R Sbjct: 324 GVKRRQEVRGV-KRGITVMDDFAHHPTAVRETLRAVRPFYTQGRIIAVF--EPRTNSSMR 380 Query: 400 PIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR---IEAIRTAI 453 + I A D AD+ + + + P + R + E+G + + T + Sbjct: 381 KVFQTIYPQAFDDADLVCICRPSAMGKIPVEERLSPEKLVADICERGTQALLFDDTDTLV 440 Query: 454 EMLNKQDV-----LVVAGKGHETVH 473 + L K V L+++ G + +H Sbjct: 441 DFLVKMGVTGDLMLIMSNGGFDNIH 465 >gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii ATCC 14266] gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii ATCC 14266] Length = 477 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 100/416 (24%), Positives = 160/416 (38%), Gaps = 56/416 (13%) Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSG 141 A I + P LV + + S L G+ + + GT GK+S S Q +G Sbjct: 78 AAIPQDNPELVAAREQNIPVIRRSDLLGELMTGSTQVLIAGTHGKTSTTSMAVVAMQAAG 137 Query: 142 LS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQH 197 + SF IG Q N+ T + QG H V + S L ++ Sbjct: 138 MDPSFAIG--------GQLNKAGTNA------------HQGSGHCFVAEADESDASLLRY 177 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 D I ++ TN+ DH+D+ T +AYF F L ++ DD ++ + Sbjct: 178 SPD-IAVV----TNIEPDHLDFFHTPEAYFQV-FDDFASRLTDTGVLVVCLDDEHAAALG 231 Query: 258 KRAHNAGCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +R +V GY + ++ V + V ++ + +P Sbjct: 232 ERQKT---KVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIP 288 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYA 363 G V NA A + G D A + + + + V RFEF G + RG +Y DYA Sbjct: 289 GTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYA 348 Query: 364 HTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 H + +L R SG++IVVF + AL LAD A+V D Sbjct: 349 HHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIY 408 Query: 420 PRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472 E P + I +++I + + N +T E+ + D+++ G G TV Sbjct: 409 GAREQPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAELAHPGDMVITMGAGDVTV 464 >gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ED133] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium cellulovorans 743B] Length = 453 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 85/405 (20%), Positives = 161/405 (39%), Gaps = 36/405 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKED--GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + VS+ ++ ++++ + +K D + + QAI GA AI+V I Sbjct: 26 LKSVSTRVFGVKPEYLYIYLTYSKSDYNPNPDVEQAIKNGAAAIMVP---------CKID 76 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V+NT L K ++AVTGTSGK+S + + S + Sbjct: 77 CKVPQIIVENTDTALRTLCKHYRKKFDIPVIAVTGTSGKTSTKDLIALVL------SERF 130 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 T+S+ ++ + P L + ++ + + S+G + +D ++ G Sbjct: 131 NTHKTLSNV--NDLIGVP-----MTTLQINDTHQISVIEIGLRSYGHIKKGVDIVRPSIG 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++G HI +++ AKM + K II DD + ++ + ++ Sbjct: 184 VITSIGTAHISSFGSKENIMKAKMEV-ATYFDKNDILIINGDDPLLSTIKEKPY----KI 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAI 325 + + GK + K ++ V + K + LF L PG VYNA+ A + Sbjct: 239 IRISLNGKGEYNAKDVRDLGEKGVEFKCDYKGEEHLFKLKVPGIHNVYNAMFAIAIGDLF 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 I+ V + K R V + I Y +S++ + +++ + I Sbjct: 299 DIEVDDVKRGIVKFQPDNLRVNIVKMKNNAKIILDCYTSELDSMKAGINVLKSFGGNKKI 358 Query: 386 VV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 V +GCG ++ R I G+ + DI + N R + E Sbjct: 359 AVLGSMYGCGNLTEEIHREI-GRYVIGKCDILVTVGGNARYINEE 402 >gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola DG893] Length = 463 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 134/324 (41%), Gaps = 34/324 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R I +G +FVA+ G DGH ++ A GA A VV A D S + P Sbjct: 31 VSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKA----DPSMGL----PQ 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T L+ A +A+TG+SGK++V V I + G +T Sbjct: 83 IRVSDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVG---------NT 133 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +++ +N + P ++ L + + + AS G H ++ ++ TN Sbjct: 134 LATEGNLNNHIGVPLTLFRLSPEHQLGA-----IELGASGLGEIAHTVNIVRPEVVILTN 188 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G+ H++ AK + + P+ ++ +DD +R AG R ++ G Sbjct: 189 AGQAHLEGFGGYDNVVRAKGEIIDG-APETGLVVLNSDDPAFDLWRQR---AGQRRVA-G 243 Query: 272 YQGKFIHLKKVCA--IHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 G+ IH+ V + +G D L GE + NAL+A + Sbjct: 244 VSGRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAAREL 303 Query: 326 GIDSALVLEHLEKLHVVPGRFEFV 349 G D+ + L L V GR + + Sbjct: 304 GADNEAIKAGLAALKPVKGRLQMM 327 >gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Prosthecochloris aestuarii DSM 271] Length = 468 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 84/373 (22%), Positives = 151/373 (40%), Gaps = 46/373 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I++G IF A+ G + DGH ++ A GA VV+ + + + + Sbjct: 32 VSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWRY 91 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV +T + L AS K ++ + G++GK++ + +++++ Sbjct: 92 LVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVLG----TTYKV----H 143 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206 +S +N L P ++ + L+ G+ H ++ + IA Sbjct: 144 MSKGNLNNHLGVPLTLFGLRDTHDLAVVEMGINHPG-----------EMELLTSIARPDF 192 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHN 262 TN+G +H+++ A+ L+ + + + + DA ++E+ R Sbjct: 193 ALLTNIGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDARLLAAAREIQNRVDY 252 Query: 263 AGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN--ALVAA 319 R G I +K V + T+ + G V N A A Sbjct: 253 GPER------DGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAV 306 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 G C + +++ + E L L G R EF+ + G RI+ D Y +S+ M LK + Sbjct: 307 GSCFNVPLNA--IAEGLGSLVPADGWKRLEFI--EAGGIRIFNDTYNANPDSVTMALKTV 362 Query: 377 RTI-TSGRIIVVF 388 I SGR ++VF Sbjct: 363 CEIPCSGRRVLVF 375 >gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Synechococcus sp. CC9902] gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9902] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 150/369 (40%), Gaps = 47/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +DSR +Q G FV +VG DGH F+ Q A GA+A VV Q +S + S+ Sbjct: 26 LGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAAVVE-----QSWSDPLPSD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 VD+T K A + ++AVTG++GK++ ++ + P Sbjct: 81 LLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRA----------ALAP 130 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLD-GIKLIAG 207 + +N P+ + A S+ + + +E G + RL + Sbjct: 131 LGDVHCSEGNNNNDIGVPLTVLSADSHHCA-----LVIEMGMRGPGEIERLSRCTEPDVA 185 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G HI +++A AK + L + +I A DA + + + + RV Sbjct: 186 VITNIGTAHIGRLGSREAIAAAKCEITAA-LKSDGVVVIPAGDALLETALSKVWSG--RV 242 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + V + + AI Q +E PL G N L+A + +G Sbjct: 243 VRVRLADDTPVAADCIGAIDAGQ-----LEVGAHRLPLPLEGRHNARNVLLALAVADQLG 297 Query: 327 IDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRTITS- 381 +DSA L + V VPG G N R GG +D + + S E ++ + ++S Sbjct: 298 VDSA----SLNAMEVSVPG-----GRNRRLVQGGLTLLDETYNA-SPEAVMAALTLLSSQ 347 Query: 382 -GRIIVVFG 389 GR V G Sbjct: 348 PGRRFAVLG 356 >gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202] Length = 464 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S+D+R +F A+ G K D H ++ +AI QG A+VV ++ N Sbjct: 25 VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------N 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P ++V++TR L A L + +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus N315] gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus COL] gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus RF122] gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JH1] gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9781] gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9763] gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9719] gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9299] gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8115] gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6300] gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6224] gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5948] gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5937] gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus D30] gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8117] gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus D139] gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9765] gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A10102] gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus H19] gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus 132] gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9754] gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8819] gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8796] gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus aureus] gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus N315] gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Mu50] gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus COL] gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus RF122] gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus JH9] gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus JH1] gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus str. Newman] gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Mu3] gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9781] gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9763] gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9719] gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9299] gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8115] gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6300] gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A6224] gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5948] gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A5937] gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus D30] gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus ED98] gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus TW20] gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus D139] gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A10102] gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9765] gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8117] gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus H19] gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ST398] gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus 04-02981] gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9754] gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8819] gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus A8796] gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS01] gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA177] gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus O11] gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus O46] gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus T0131] gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21189] gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus 21172] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella moribillum M424] Length = 452 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 38/324 (11%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 KD +++N I + +E I ++ DSR ++ G +F+ +G DGH +I A +GA Sbjct: 6 KDLEKILNAKKINLVDNKE--ITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGA 63 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + SL+D S+ I+ V+++ + + A I+A+TG++GK++ Sbjct: 64 VA-----SLSLKD---DFVSDNNIIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTT 115 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 V I + + F++ T +F +N L P I A S + + + Sbjct: 116 TKDIVTSILE----TKFKVHKTQ--GNF--NNELGVPLTILAAPEDS-----DILVLEMG 162 Query: 189 ASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 A + G +LD + KL+ + TN+G HI++ ++ AK + + K+ Sbjct: 163 ADNFG----QLDFLSKLVKPDYTIITNIGESHIEFFGSRAGIAKAKFEITNG-MKKDGFF 217 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + D+ KE+++ N+ S G I L+ +K +S++ +F Sbjct: 218 VYNGDEPLLKELVE---NSSINATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFS-- 272 Query: 304 FPLPGEFQVYNALVAAGLCIAIGI 327 L G+ ++N + A + IG+ Sbjct: 273 TTLKGKHNLFNIMFAVAIAKKIGL 296 >gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C427] gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C427] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium luteolum DSM 273] gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium luteolum DSM 273] Length = 476 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 89/397 (22%), Positives = 165/397 (41%), Gaps = 36/397 (9%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 L ++DF + +L + P R++ + + DSR I IF+A+ G DGH F+ Sbjct: 5 LTWEDFRK-CGELVLNPEAHPRREVQDPVAAIDSRAIDGPGIFIALRGESTDGHRFVQDV 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA+ +VS + + +VV +T K L AS P ++ + G+ Sbjct: 64 FRRGADFAMVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQELASIYRDTFPIPVVGIGGS 123 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ + + + F++ +S +N L P ++ L + T Sbjct: 124 NGKTTTKEMTAAVLR----TGFKV----HVSRGNFNNHLGVP--------ITLLGMRRDT 167 Query: 184 HVSV--EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 ++V +H + L I + G TN+G +H+++ + A+ +LF+ L Sbjct: 168 EIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFDWLDRC 227 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQ-QVTISVEG 297 + ADD+ + A ++ VL + +G+ + V H + T++ Sbjct: 228 RGTIFVNADDS---RLADAATDSERHVLYGTGSPEGRICSAESVSVGHGGRVSFTLTAGA 284 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRG 355 G V NA+ AA + + G+ +A V LE L G R E + G Sbjct: 285 VREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLEL---SEEG 341 Query: 356 GRIYVDYAHTSN--SLEMILKNIRTI-TSGRIIVVFG 389 G ++ + +N S+ + L + + SGR I V G Sbjct: 342 GVTIINDTYNANPDSMRLALDTLADMPCSGRRIAVIG 378 >gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M876] gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus C160] gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M899] gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C101] gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 58-424] gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M809] gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M1015] gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MN8] gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 68-397] gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus E1410] gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M876] gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus C101] gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M899] gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus C160] gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus 58-424] gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus M809] gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus aureus subsp. aureus MN8] gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus aureus subsp. aureus TCH60] gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 449 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 476 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG I TN+ +H+D++ + + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTLAI---VTNIDPEHLDHYGSFEKVQDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 +P A + D + ++ R + R+++ G+ + I + I + T Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263 Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + G+D D P+PG + NAL A G+ + I A + + + V RF Sbjct: 264 VIRGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323 Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 VG G G + V DY H ++ +L R R+I V Sbjct: 324 RVGEIKIGDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366 >gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans DSM 574] Length = 459 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+DY+ +++ A R F +P+ A++ DD ++++ + C +++ Sbjct: 180 TNIEDDHLDYYGSRENIVKA-FREFLNKVPESGLAVVCGDDPTVRQLIA---DLTCPLVT 235 Query: 270 VG-YQGKFIHLKKVCAIHNKQQV-TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326 G Y + A+ + + +S G+ + +PG + NAL + +G Sbjct: 236 YGSYNSGADYTIDSFALQGETTLGQVSFRGEKLGQLVLNVPGYHNLLNALAVVAVGRYVG 295 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 + + + L + R++ +G +G +I DYAH ++ L+ R GRII Sbjct: 296 LSFSQIAAALREFKGAKRRYQLIG-EVKGAKIVDDYAHHPTEIKATLQAARQAHPGRIIA 354 Query: 387 VFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-EKIRAEII 433 VF R R + + ADI I+TD P E P E + ++I Sbjct: 355 VFQP--HRFTRTRQLFREFGESFAHADILILTDIYPAGEKPIEGVHTKLI 402 >gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella microti CCM 4915] gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella microti CCM 4915] Length = 467 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 44/277 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + +G Q+G I + Y+ Sbjct: 117 IAITGTNGKSTTTALIAHIIKATG-RDMQLG--GNIGTAILTLEPPCADRFYV------- 166 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 167 ---------VECSSYQIDLA--PSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AII DDAY + + R H AG RV+ + + G F K+ + + Sbjct: 212 VAASGTAIIGIDDAYCQVIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 I S+EG + L G NAL A C++ G+ + L+ + R E VG Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVG- 325 Query: 352 NSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 RG ++V+ + +N +L +NI I G Sbjct: 326 -RRGKVLFVNDSKATNAEATAPALSSFPQNIYWIVGG 361 >gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidobacterium sp. MP5ACTX8] Length = 463 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 153/380 (40%), Gaps = 62/380 (16%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S DSR I AG +F A+ G + DGH ++ A+A GA A VVS + AT+ + Sbjct: 28 SIDSRTIGAGELFFAVRGERVDGHDYVETALADGAVAAVVSMRWL---KPATVEEGKLLR 84 Query: 94 VVDNTR----KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-- 147 V D + + A+R+ + + I+ VTG++GK++ + Q+ + F + Sbjct: 85 VPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGKTTTKECIAQVLS----AKFHVLK 140 Query: 148 GPTSTISSFAQDNRLTTPSPIYLA-------------KALSYLSSQGVTHVSVEASSHGL 194 + + F +L P + +AL+ ++ VS A H Sbjct: 141 SEGNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVH-- 198 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---- 250 +H DGI+ IA AK L E LP + AI+ DD Sbjct: 199 LEHFPDGIEGIA---------------------RAKYELV-EALPADGIAILNGDDERVA 236 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 A+ K + R G G + + +++ A + + + + G+ L G Sbjct: 237 AFGKGMRGRTVLYGT---LPGLTVRAVEIEE--AGLDGTRFRVGIVGRVQKIHLRLMGRH 291 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 V NAL A + + GID LE++ R E + G +I D Y +L Sbjct: 292 NVLNALAAVAVGLQSGIDLKDCCLALEQMRPTEKRGEVI--ERHGAKIINDCYNSNPRAL 349 Query: 370 EMILKNIRTITSGRIIVVFG 389 E +++ +R + R IV+ G Sbjct: 350 EAMVEALRKTKATRRIVMAG 369 >gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 455 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 11/119 (9%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R+I+ G +F+A+ G DGH F+ +A +GA A VVS N P Sbjct: 25 NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDK---------YRNLP 75 Query: 92 ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++VV +T K L AS N ++A+TG+ GK++ + + + G+S G Sbjct: 76 VIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDG 134 >gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305] Length = 464 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S+D+R +F A+ G K D H ++ +AI QG A+VV ++ N Sbjct: 25 VENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------N 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P ++V++TR L A L + +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. NATL1A] Length = 465 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 99/406 (24%), Positives = 168/406 (41%), Gaps = 53/406 (13%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ +KD +L L + I +S+DSR I+ G FV +VGN DGH ++ A Sbjct: 2 DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAF 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPEN----ILA 119 G +A VVS Y + + + P VV +T L+A ++ H N ++A Sbjct: 62 DLGIQAAVVSEKY-----NGLVPTGLPHWVVPDT-----LYAYQQIALLHRRNLSLPVVA 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+ GK++ ++ I G +SS +N + + + K L S Sbjct: 112 VTGSVGKTTTRELIRAILSPLG---------EIVSSRGNEN-----NDVGVPKTLLSGSE 157 Query: 180 QGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E G Q RL + + TN+G+ HI +++ AK + L Sbjct: 158 TDAAFV-LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYL 216 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIH---- 286 P I + D K ++++ RV G+ ++ L+ + + Sbjct: 217 SPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQI 276 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + Q I EG+ F PL G N L+A + +G+ S L+ L K+++ GR Sbjct: 277 DMQNNFILFEGRKFK--LPLEGRHNAMNFLLALTVATELGL-SIKKLDQL-KINMPIGRN 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGC 390 V G + +D + + S E ++ ++ + S GR V G Sbjct: 333 RLVDC---GQYLVLDETYNA-SPESVIASLELLVSKPGRHFAVLGT 374 >gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium chlorochromatii CaD3] gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium chlorochromatii CaD3] Length = 476 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 89/375 (23%), Positives = 157/375 (41%), Gaps = 50/375 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G + DGH ++ GA +V+ ++ + + LVV Sbjct: 36 DSREVSEGGLFVALHGERTDGHRYVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVV 95 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++T L A R I+A+ G++GK++ V + + S+ S Sbjct: 96 EDTVAGLQHLAVRYRNTFSIPIVAIGGSNGKTTTKEMVAAV----------LASDSSAVS 145 Query: 156 FAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS---FTN 211 +Q NR P+ L + + + + + V V + +H + L +L+A + TN Sbjct: 146 MSQGNRNNHLGVPLTLLQ-MRHSTERAVVEVGI---NHPNEMAML--AELVAPTHLLLTN 199 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G +H+++ A+ +L++ + A I ADD E ++ A A + Sbjct: 200 IGHEHLEFLGDLDGVAKAETQLYDYARQHGATAFINADD----ERLRAA--AEGMPFRID 253 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------------FPLPGEFQVYNALVA 318 Y +H + V ++ + VT+ +G+ FL G V NA+ A Sbjct: 254 YS---LH-EAVDSLVWAEDVTVERDGR-LSFLLVTKGRSEQERLRLHFTGRHNVLNAVAA 308 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + + GI + E L L PG R E V G R+ D Y S+S+ + Sbjct: 309 ATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVG--GVRLLNDTYNANSDSMRRAIDA 366 Query: 376 IRTI-TSGRIIVVFG 389 + + +GR I V G Sbjct: 367 LCDMPCNGRRIAVVG 381 >gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL027PA2] Length = 471 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L + L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRVTLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia billingiae Eb661] Length = 453 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 44/381 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +++V++D+R + AG +F+A+ G + D H F+ +A+A GA A++VS ++ + Sbjct: 24 VDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMAAGASALLVSKHVTVAVPQVVVA-- 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +TR L A + + ++A+TG+SGK+SV I + G + + G Sbjct: 82 -------DTRIALGQLAGWVRQQSTARVVALTGSSGKTSVKEMTAAILRECGETLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P + L +S V + A+ G + + + Sbjct: 135 L--------NNDIGVPLTL-----LRLNASHQYAVVELGANHQGEIAYTTEITRPETALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL H++ + AK +F+ LP AI+ AD S + H+ + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFQG-LPINGTAILNAD---SNDWPHWQHSLHSKTV- 236 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---------FPLPGEFQVYNALVAAG 320 +F + + + V ++ G F + PLPG + NAL AA Sbjct: 237 ----WRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAAA 292 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 L +++ + + + L L VPGR V ++ +D ++ +N S+ + + Sbjct: 293 LALSVDAPLSAIQKGLSHLQAVPGRLYPVALAEN--KLLLDDSYNANVGSMTAAAQVLSE 350 Query: 379 ITSGRIIVVFGCGGDRDQGKR 399 + R++VV G D+ + Sbjct: 351 MPGYRVMVVGDMGELGDEAEE 371 >gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptotrichia goodfellowii F0264] Length = 459 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 85/380 (22%), Positives = 163/380 (42%), Gaps = 57/380 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN++S +S+ +FVAI G G+ +I +A+ +GA A V +A++ D ++ Sbjct: 23 INKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYA-VYDNAHA--DIKEEYKNK 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSGL 142 T V+++ +FL FA + ++ +TG++GK++V Q+ + G Sbjct: 76 T--FFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGN 133 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T+ +D++ I L +S G + + D I Sbjct: 134 YNNHIGLPFTLLRLEKDDKF-----IILEMGMS-----GFGEIELLGKISNPD------I 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAH 261 +I TN+G H+++ T++ F AK ELLP + II DD Y K + + + Sbjct: 178 SII----TNIGESHLEFLHTKENVFKAKT----ELLPYTKEVLIINGDDDYLKNINESSL 229 Query: 262 NAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQV 312 +VL S + + + ++ K+ + F + GE + Sbjct: 230 KT-IKVLRKDSKNIEKSNFYYGNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNI 288 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLE 370 N +A + GI+ + E ++ + + RF+ +G IY++ A+ ++ S++ Sbjct: 289 LNLTMAIAVAKQFGIEDKDIEETVKNIKLTDMRFQIT---EKGNTIYINDAYNASPASMK 345 Query: 371 MILKNIRTITSGRI-IVVFG 389 L+ I + R+ I V G Sbjct: 346 KSLETFSEIYNDRMKIAVLG 365 >gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Enterococcus italicus DSM 15952] Length = 447 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 84/400 (21%), Positives = 159/400 (39%), Gaps = 80/400 (20%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + V DSR + AG +FV + G + DGH FI QAIA GA +++ +S+QD I Sbjct: 19 RIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGA----IATFWSVQDQPEDIT 73 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140 ++ +K + + L K ++A+TG++GK++ + ++ Sbjct: 74 VIQVTDCLEAMQKLATYYRELLAPK----VVAITGSNGKTTTKDLTASVLSQAFRTYKTQ 129 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + +IG TI +D ++ + G+ H + + + + Sbjct: 130 GNYNNEIGLPYTILHMPKDTKVV-------------VLEMGMDHAGDLTTLSTIARPDIA 176 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYS 253 I +I G HI+ ++ KM + L +P + P + + Sbjct: 177 AITMI-------GEAHIENLGSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMT 229 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V+ +AG H+ + + +Q SV K+ D+ PL G + V Sbjct: 230 QQVVTFGIDAGDVA---------AHILE----EHAEQTVFSV--KEQDYRIPLLGTYNVK 274 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NAL+A + G+ + L+ + V R +++ + G R+ D Y ++ ++ Sbjct: 275 NALIAYSIGEKFGVTPEQIANGLKNVQVTKNRTQWLEMEN-GTRLLSDVYNANPTAMGLV 333 Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412 L + GK P+ G+ LAD+ Sbjct: 334 LDSF--------------------GKLPVQGRRFAVLADM 353 >gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Riesia pediculicola USDA] Length = 460 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 18/131 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++S++SR+ ++ +F+AI G DGH F Q++ G+ AI+ S+ + Sbjct: 30 IQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGSLAILSEKILSI---------D 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P ++V+NT + AS + K +A+TG+SGK+SV I + G Sbjct: 81 HPQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILSQVG-------- 132 Query: 150 TSTISSFAQDN 160 STIS+ +N Sbjct: 133 -STISTKKNNN 142 >gi|254391593|ref|ZP_05006792.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces clavuligerus ATCC 27064] gi|294812134|ref|ZP_06770777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces clavuligerus ATCC 27064] gi|326440710|ref|ZP_08215444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces clavuligerus ATCC 27064] gi|197705279|gb|EDY51091.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces clavuligerus ATCC 27064] gi|294324733|gb|EFG06376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces clavuligerus ATCC 27064] Length = 492 Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 25/277 (9%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRL 162 A RL G LAVTGT+GK++ + I + +GL + +G S + + +N Sbjct: 103 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSLLDAVLGENTG 162 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 + ++VE SS+ L H ++ + + NL DH+D+H + Sbjct: 163 ENAGQDAGRDGGEGADANAYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGS 220 Query: 223 QQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL--SVGYQGKF-- 276 +AY K R++E + A +Y A D ++++++ A GCR + ++G G Sbjct: 221 MEAYAADKGRIYE----GNTVACVYNAADPATEDLVREADVEEGCRAIGFTLGTPGPSQL 276 Query: 277 -----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 I + + + QQ E D D P + NAL AA L A G+ + Sbjct: 277 GVVDGILVDRAFVANRHQQAQELAEVADID----PPAPHNIANALAAAALARAFGVPATA 332 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 V E L P R E V + G YVD + +N+ Sbjct: 333 VREGLRSFRPDPHRIEKVADVA--GVAYVDDSKATNT 367 >gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Amycolatopsis mediterranei U32] Length = 500 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 90/406 (22%), Positives = 157/406 (38%), Gaps = 73/406 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + +G +FVA+ G K DGH F QA+ GA A++ + ++ A P+ Sbjct: 33 DTRELTSGGLFVALPGEKVDGHDFAAQAVEAGAVAVLAA-----REVDAPAIVVPPLAAG 87 Query: 96 DNTRKFLSL--------------------FASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + + ++L + + + ++ VTG+SGK+S + Q Sbjct: 88 EAHERSVALTGDKDGSGAAVLAALAKLARYVVQRLAEGELTVVGVTGSSGKTSTKDVIAQ 147 Query: 136 ICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + + +GPT + SF +N L P A A + H+ +E S+ G Sbjct: 148 LLE-------PLGPTIAPPGSF--NNELGHPWTALRAGAETR-------HLVLELSARGP 191 Query: 195 DQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + + IA G N+G H+ +++ K L E LP++ A++ DD Sbjct: 192 GH--IAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKGELVEA-LPEDGVAVLNLDD 248 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPG 308 + R RV+ VG + + ++ + + + + PL G Sbjct: 249 PLVAAMASRTK---ARVVFVGESPSAQVRAENITLDDEARASFRLITPAGEAGVKLPLHG 305 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 E V NAL AA + + +G + L L R V T G I D + Sbjct: 306 EHHVGNALSAAAVALELGATPEEIATRLSALERRSARRMEVVTRPDGVTILNDSFNANPE 365 Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-----IMGKIALD 408 S+ LK + +T R+ G+R +MG++ D Sbjct: 366 SMRAGLKALAAMT-------------RETGRRSWAVLGVMGELGAD 398 >gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens] gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens] Length = 345 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 76/335 (22%), Positives = 130/335 (38%), Gaps = 40/335 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q RE I V +DSR I+ G +FV +VG + DGH + + GA A + Sbjct: 2 QHRELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRD------- 54 Query: 84 ATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 R P ++VVD+T L A + ++ +TG++GK++ V + Sbjct: 55 ---RGEAPAGAVIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLS-- 109 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRL 199 +++++ T +F +N + P L+ L T ++V E G +H + Sbjct: 110 --TTYKVHKTG--GNF--NNHIGLP--------LTILEMPADTEIAVLEMGMSG--RHEI 153 Query: 200 DGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + + IA TN+G H+ ++ AK+ + + P I + D+ Sbjct: 154 ERLSQIARPDVAVITNIGEAHLLQLGSRHEIARAKVEIISGMKPG-GLLIYHGDEPLIPM 212 Query: 256 VMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 V+ A G + G H+K + S+ + PL G+ V Sbjct: 213 VLGEAETVKPEGLGTFTFGLDHSNDDYPTGMMFHSKGIIFTSLLHPEEGLDLPLLGQHNV 272 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 N L A + GI + L LH+ R E Sbjct: 273 INCLAALAVARHFGITEENIRTGLTGLHLTGMRIE 307 >gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. C150] Length = 457 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 39/397 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + IN++ DSR I AG +F+ + G + DGH FI A GA A ++ +D A Sbjct: 21 YEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFENGALA-----TFTEKDLPA 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV D F L A L K +++AVTG++GK++ + I + + Sbjct: 75 ---DQAHILVEDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ +D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSD-----PIVDPFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G +G + + ++ K +T S D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-EGSDLTVSELTEY--KDHLTFSTNFLDGQITLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI--- 379 G+ + L L + R E+ + G I D Y ++++IL+ I Sbjct: 288 HWGVTEENIFSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAIPKN 346 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 G+ I V + + + ++ L LA AI T Sbjct: 347 EGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAIDT 383 >gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora bispora DSM 43833] gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora bispora DSM 43833] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 28/165 (16%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LA+TGT+GK++ + + +GL + +G Sbjct: 99 LAWRLRGDGAAPWLALTGTNGKTTAVRMLTSMLTAAGLKALAVGNVGV------------ 146 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 PI A Y ++VE SS L H GI +A + N+ DHID+H + + Sbjct: 147 --PIVEAVREPY------DVLAVELSSFQL--HWSSGIAPLAAAVLNVAPDHIDWHGSLE 196 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268 Y AK ++F + +P +IY ADD + + AG RV+ Sbjct: 197 EYAAAKAKIF-----RNAPTVIYNADDERCARLAEPYRAAGRRVV 236 >gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 15912] Length = 456 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 149/376 (39%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + + + DSR I G +FV + G + DGH FI A GA A FS Sbjct: 20 QFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++V++ A+ K ++ AVTG++GK++ + Q+ + L+ Sbjct: 69 EKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLT 128 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI 202 G +N + P + +G + +E H D H L + Sbjct: 129 YKTQG--------NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSEL 173 Query: 203 KLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMK 258 + L G H+++ + + K+++ + +P+ ++ AD DAY E Sbjct: 174 AHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVDAYLPE--- 229 Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G + FI I K +T + P+ G++ NA++ Sbjct: 230 -----NQTVVRFGPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMI 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + G+ A + + E L + R E+ S G I D Y ++ +IL+ Sbjct: 281 AAYVALKEGVSEAAIRDSFETLQLTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETF 339 Query: 377 RTITS---GRIIVVFG 389 TI + GR + V Sbjct: 340 STIPANPNGRKLAVLA 355 >gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMG 18311] Length = 457 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ +N++ DSR I AG +F+ + G + DGH FI A GA A Sbjct: 21 YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ ++VD+T + A+ K +++AVTG++GK++ + I + + Sbjct: 72 -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G + + ++ K +T S + D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +G+ +L L L + R E+ + G I D Y +++++L+ I Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343 >gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha proteobacterium HTCC2255] Length = 462 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 81/372 (21%), Positives = 150/372 (40%), Gaps = 34/372 (9%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N +S D+R ++ G +FVA+ ++ DGH +I A GA A +VS D N Sbjct: 24 NGISIDTRTLKMGDLFVAL-KDQRDGHEYIKIAFENGAAAALVSRVPDGLD------ENL 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+ L A + ++ +TG+ GK+S ++ I +G Sbjct: 77 PLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTSTKEMLKSILIANG--------K 128 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGS 208 + + + +N P+ LA+ + +E + D+ R KL Sbjct: 129 THAAERSYNNHWGV--PLTLARM-----PKETDFAVIEIGMNNPDEIRPLAKLAKLDVAI 181 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ H+ + + AK +FE L + AI+ +D + ++ +++ Sbjct: 182 VLNVAPVHLKAFKNIEGIAYAKAEIFEN-LSSSNIAIVNSDLSTFDILLNTVQKVRSKLI 240 Query: 269 SVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G+ + L NK VT + DF+F F G+ NA+ A+GI Sbjct: 241 TFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAAAEAVGI 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIRTITS 381 + + GR + G+I +D ++ +N + M +L ++ S Sbjct: 301 ERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLS--QSEAS 358 Query: 382 GRIIVVFGCGGD 393 GR + + G G+ Sbjct: 359 GRKVAILGDMGE 370 >gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C str. JGS1495] gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C str. JGS1495] Length = 457 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKNIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + RI+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 360 >gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens SM101] gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens SM101] Length = 457 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 132/338 (39%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F +L+P + I ADD K+VM+ A C VL+ G I + + + K T Sbjct: 208 FVKLIPNDGYIIGNADD---KKVMEVLEVAKCNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360 >gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Acidiphilium cryptum JF-5] gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium cryptum JF-5] Length = 451 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 31/249 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E VS DSR I G +FVA+ + DGH F+P A A+GA ++V+ +D A Sbjct: 22 EADATGVSIDSRTIAPGELFVALA-DARDGHDFVPDAEAKGAACVLVA-----RDVGA-- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L+V++ + L+ + ++AVTG+ GKS+ +++I LS+F Sbjct: 74 ---GPALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRI-----LSAF- 124 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 G T + +SF +N + P L+ L ++ V +H + L I + Sbjct: 125 -GATHAAEASF--NNHIGVP------LTLARLPAEADFAVVEIGMNHPGEIAPLSAITRP 175 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G T +G H+ + +A + K L ++P A + + + +RA + G Sbjct: 176 HVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-G 232 Query: 265 CRVLSVGYQ 273 RV+S G Q Sbjct: 233 VRVVSFGAQ 241 >gi|254292767|ref|YP_003058790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hirschia baltica ATCC 49814] gi|254041298|gb|ACT58093.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hirschia baltica ATCC 49814] Length = 474 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 32/257 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+ +TGT+GKS+ + + I +R+G ++G I D + + IY+ Sbjct: 118 IVGITGTNGKSTTTALIGHILERAG-RDVRVG--GNIGVGVLDLKAMNANSIYV------ 168 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E SS+ LD +D ++ F N+ DH+D H Q Y AK R+F Sbjct: 169 ----------LELSSYQLDL--IDSLRCDVAVFLNVSPDHLDRHGGMQGYVAAKNRIFRN 216 Query: 237 LLPKESPAIIYADDAYSKEVMKR--AHNAG--CRVLSVGYQGKFIH-LKKVCAIHNKQQV 291 ++ A+I DD ++ + R A N C V + G+ + L+ + + Sbjct: 217 QTSADT-AVIGVDDMRTQILCTRLAAENTRRVCPVSAEMALGRGVSVLEGMLSDSLSGHA 275 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 SV D LPG+ NA A C ++G+D++ +++ L + R E VG Sbjct: 276 ETSV---DLSSARALPGQHNHQNAAAAYAACQSLGLDASEIIDGLNSFPGLEHRLESVG- 331 Query: 352 NSRGGRIYVDYAHTSNS 368 S G +V+ + +NS Sbjct: 332 -SVNGVAFVNDSKATNS 347 >gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum SK46] gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum SK46] Length = 497 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 113/295 (38%), Gaps = 53/295 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 L + GT GK+S S Q +GL SF +G + S A N +++A+A Sbjct: 126 LLIAGTHGKTSTTSMTVAALQAAGLDPSFAVG---GLMSKAGVNAHQGSGDVFVAEADES 182 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S L+ Q V+V TN+ DH+D+ + Y+ A Sbjct: 183 DASLLTYQ--PEVAV---------------------ITNIEPDHLDFFGDDETYY-AVFD 218 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---------LKKVC 283 F E + ++ A+D ++ + +RA G VL+ G + L Sbjct: 219 AFAERIKDGGHLVVCAEDPHAAALGERAVERGINVLAYGGEDALAKHPTLPVGAVLHGWT 278 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHV 341 + +V +V F PG NAL A G C+ G D + L + Sbjct: 279 PVGGGARVEATVGSTSVRFELHQPGRHMALNALAAMVGGDCV--GADLGRMARGLGEFTG 336 Query: 342 VPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVF 388 V RF++ G+ G RIY DYAH + +L R + + G +I VF Sbjct: 337 VRRRFDYHGSIGEGPFVGARIYDDYAHHPTEVSAVLGAARELVTEAGRGNVIAVF 391 >gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eubacterium saphenum ATCC 49989] Length = 481 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 95/417 (22%), Positives = 163/417 (39%), Gaps = 67/417 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS---AYSLQDF 82 ++ K+ V +DSR ++ G IFV + G DGH ++ QA GA I+V+ A ++ Sbjct: 27 QDGKMFNVVTDSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAI 86 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 NT ++ V + A + +TG+ GK++V V + S + Sbjct: 87 DDARAMNTSVISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLP-SAM 145 Query: 143 SSFQ--------IGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHG 193 ++++ IG T S +D L AK + LS V++ Sbjct: 146 NTYKTKGNFNSLIGLPLTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAI------ 199 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 T +G H++ +++ F AK + + P +I D Sbjct: 200 ---------------ITKIGVSHVERLGSRENIFRAKSEIVNHIKP--GGTLILGVDEDE 242 Query: 254 KEVMKRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LF 304 + + K V+ V Y G + C + V +EG F+F Sbjct: 243 QYLKKENFTGNFNVIEVTAKHYAG--VDSNTYCV----ENVRDDMEGIRFEFSGGGYEKI 296 Query: 305 PLP-GEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 P+ ++NAL AGL IA G ID + E L+ ++ R E +GG + Sbjct: 297 PVTINTHGIHNAL-NAGLAIACGLQFDIDLESIKEGLKNVNFTAKRLEI---KEKGGITF 352 Query: 360 VD--YAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA 410 +D Y + S+ L+ + I+ GR++ V G G D + + I G++ DL Sbjct: 353 IDDSYNASPESMSSALRVLSQISKGRMVAVLGDMNELGKDSEDFHKRI-GRLVFDLG 408 >gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus CNRZ1066] Length = 457 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ +N++ DSR I AG +F+ + G + DGH FI A GA A Sbjct: 21 YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ ++VD+T + A+ K +++AVTG++GK++ + I + + Sbjct: 72 -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDLFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G + + ++ K +T S + D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +G+ +L L L + R E+ + G I D Y +++++L+ I Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343 >gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis] Length = 446 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 139/372 (37%), Gaps = 60/372 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA G DGH + +A GA A++ S SL P +VV Sbjct: 31 DSRQAEPGGLFVAFAGEHADGHDYAERAGRAGAVAVLGSRPTSL-----------PTVVV 79 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152 ++ R L A+ + + + ++ VTG+ GK+ + + + GPT +T Sbjct: 80 EDVRTALQTLAAHVVARLRDGLTVVGVTGSQGKTGTKDLLAAVLSGA-------GPTVAT 132 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIAGSFT 210 S +N L P L+ L +Q T V + H D L G L+A Sbjct: 133 TGSL--NNELGVP--------LTMLRAQAATRFLVLEMGARHEGDIAELTG--LVAPDIA 180 Query: 211 ---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMK------- 258 N+G H+ ++ A AK L + L+P + A++ ADD S V+ Sbjct: 181 VVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGT-AVLNADDPRVASMSVLTDGPVLTF 239 Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R A +VL V V + T+ PL G Q NA Sbjct: 240 GRTDPADVQVLDV-----------VLDRLGRPSCTLRTVDTSARLALPLVGAHQALNASA 288 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AA +A G+ L L + P R E + Y +S L + Sbjct: 289 AAAAALAAGVPLDLATTALTTASLSPWRMELRDLACGATLLNDSYNANPDSTRAALDALS 348 Query: 378 TITSGRIIVVFG 389 I GR I V G Sbjct: 349 AIEGGRRIAVLG 360 >gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 455 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 8/109 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR I G +FVA+ G + DGH ++ + A+GA A +V + S P Sbjct: 28 VSIDSRAIAPGQLFVALAGPRFDGHDYLNEVAAKGAVAALVEREVT--------NSTLPQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 L+V++TR+ L + + + A+TG+SGK++V + I + G Sbjct: 80 LLVNDTRQALGQLGALNRAAYGNPVAAITGSSGKTTVKEMLASILRTRG 128 >gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus ND03] Length = 457 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ +N++ DSR I AG +F+ + G + DGH FI A GA A Sbjct: 21 YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ ++VD+T + A+ K +++AVTG++GK++ + I + + Sbjct: 72 -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G + + ++ K +T S + D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +G+ +L L L + R E+ + G I D Y +++++L+ I Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343 >gi|182420305|ref|ZP_02951534.1| cyanophycin synthetase [Clostridium butyricum 5521] gi|237666435|ref|ZP_04526420.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375900|gb|EDT73492.1| cyanophycin synthetase [Clostridium butyricum 5521] gi|237657634|gb|EEP55189.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 869 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 42/387 (10%) Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 LY P NI ++VTGT+GK++ + + + G+++ G TST + D + Sbjct: 470 LYEGRPSNIPVISVTGTNGKTTTTRMIGHVLKMMGMTT---GITSTDGIYINDKCIHKGD 526 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQ 224 A + L ++ V V +E + GL + L TN+ DH+ D + + Sbjct: 527 DSGFNSAKTLLLNRDVEAVVLETARGGLVRRGLAYDLADVAVITNITNDHLGLDGIDSME 586 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGY 272 K + EE+ K +I ADD YSK ++ R ++ G Sbjct: 587 DLMFVKSLVGEEV-KKNGYTVINADDKYSKRILDRISCEKIYFSKSKDNELIKENINNGK 645 Query: 273 QGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 FI +C I+N ++ + IS++ + L + + NA+ A + + ID + Sbjct: 646 IAVFIEDNNICVINNHRKYLIISIDELPISYNGILT--YNIENAMAACAALVGLNIDYCM 703 Query: 332 VLEHLEKLHVV---PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387 + + GRF R ++ +DY H + +L I + T R+I V Sbjct: 704 ISKGFSDFMPCDDNEGRFNMFEYYGR--KVILDYGHNIEGYKAVLSCINKLKTKNRLIGV 761 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEII-----HGIP 437 G GDR +G+I + D I+ +D R E + ++ I+ + Sbjct: 762 VGVPGDRQDNVIKEIGEICCEYLDEIIIKEDKDRRGRSIGEVSQLLKISILKNSNKKNVK 821 Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464 ++++ ++A+ AI++ K D+++V Sbjct: 822 VYLDE---VDALEYAIKISKKDDIIIV 845 >gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus thermophilus LMD-9] Length = 457 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 150/357 (42%), Gaps = 36/357 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 +++ +N++ DSR I AG +F+ + G + DGH FI A GA A Sbjct: 21 YKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGAIATFTEKE-------- 71 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + ++ ++VD+T + A+ K +++AVTG++GK++ + I + + Sbjct: 72 -LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSNLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPCD-----PIVDPFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G + + ++ K +T S + D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-DGAELTVSELTEY--KDHLTFSTKFLDGQVTLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +G+ +L L L + R E+ + G I D Y +++++L+ I Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLVLETFSAI 343 >gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Micromonospora sp. L5] gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Micromonospora sp. L5] Length = 469 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 153/381 (40%), Gaps = 60/381 (15%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V DSR + G +FVA G + DGH + AI+ GA A++ + Sbjct: 25 RVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGAISAGAVAVLGTREV---------- 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+++V + + A + + P ++ +TG+SGK++ + Q+ R Sbjct: 75 PGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSGKTTTKDLIAQLAVR------- 127 Query: 147 IGPT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLD 200 +GPT + SF +N L P + + YL ++GV HV ++ D Sbjct: 128 LGPTVAPPGSF--NNELGHPYTALQATPETRYLVMEKGARGVGHV----------RYLCD 175 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + N+G H+ + + AK L E LP + A++ ADD + R Sbjct: 176 VVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPDDGLAVLNADDPRVDAMASRT 234 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP---------LPGEF 310 RV+ G + + ++ V VT+ G+ + + P L G Sbjct: 235 R---ARVVRYG-ESEHADVRAV-------DVTLDGRGRPSYTLVTPEGSAPVRLGLTGRH 283 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 QV N+L AA + +G+ + L +L +V R V G + D Y S Sbjct: 284 QVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVIDDSYNANPAST 343 Query: 370 EMILKNIRTITS-GRIIVVFG 389 + L+ + ++ GR + V G Sbjct: 344 GVALRALASMRGEGRTVAVLG 364 >gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27] gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma whipplei str. Twist] Length = 464 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 66/348 (18%) Query: 19 SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 S+ P+ R + DSR+I G IFVA G K DGH F+ QA GA +V+ Sbjct: 24 SLLPINGR------LKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIVTRVQE 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQI 136 + + P L+V N + + A + ++ +TG++GK++ S + + Sbjct: 78 I---------DLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTTTKSVLAYV 128 Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + G +T+++ Q+N + P + + L+ ++ +E + Sbjct: 129 LSKFG---------NTVATHGNQNNEIGFPITVSRIEPLT-------KYLVLEYGA--FK 170 Query: 196 QHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +D +K IA + G H++ + ++ + K L + LP+ S ++ DD Sbjct: 171 PGDIDCLKKIAVPDIAVLLSAGHAHVEKSGSLESVCSMKAELARD-LPEGSKVLLNYDDP 229 Query: 252 ----------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301 Y KRAH V + + +F I Q+ ++ VE K Sbjct: 230 RIARLSVGNRYYFGTDKRAHFRASHVETNIIKTRF--------IVTYQKGSVEVETK--- 278 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 L G+ QV N L A + +G D+ + ++ +++ + GR +++ Sbjct: 279 ----LIGKHQVSNVLAALSTLVLLGFDAEVCARYISEVNPIDGRMQYI 322 >gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 495 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 12/112 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R ++ G +FVA+ G+ DGH ++ +A +GA A +VS + ++ P+ Sbjct: 36 VSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRP---------VEASGPL 86 Query: 93 LVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSG 141 L+V +TR L A + K + ++ +TGT+GK++ + + R G Sbjct: 87 LIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREG 138 >gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica LVS] gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FSC200] gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. holarctica 257] gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica URFT1] gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica URFT1] gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica LVS] gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. holarctica 257] gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 451 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 LAD I+ S D + I+ +I+ G+ G++ AI ++ N+ V+++ Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436 Query: 465 AGKGHET 471 G G T Sbjct: 437 QGAGDVT 443 >gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella melaninogenica D18] Length = 826 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 165/369 (44%), Gaps = 36/369 (9%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ I+ V +DSR + +F A+ + DGH +IP+ A+G VV +D+ Sbjct: 20 KDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARGVRNFVVEVV--PEDW- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 AT ++ L V + + L A R ++ I+ +TG++GK+ V ++ Q L Sbjct: 77 ATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQ------LL 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q+ T + S+ ++++ P + L L+ + GV + S G D I+ Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMMALRDIIQ 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262 G FT LG H + + +A + K++LF ++ AI+Y AD+ + + + Sbjct: 184 PTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH-----DTEAIVYSADNEVMAQCLSQYDY 238 Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK---DFDFLFPLPGEFQVYNALV 317 G ++ SV ++K AI K + T+S K + + P + V N++ Sbjct: 239 KGQKLDWSVKNTEAAFYIK---AIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVKNSIT 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK-- 374 A + + +G+ A + E + +L V R E V G + D Y NSL++ L Sbjct: 296 CAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFM 354 Query: 375 NIRTITSGR 383 N R GR Sbjct: 355 NRRPDHKGR 363 >gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter formigenes OXCC13] gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter formigenes OXCC13] Length = 495 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 78/335 (23%) Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + +FA L G + +++AVTGT+GK++V S +C+R+G + G IS Sbjct: 101 IEMFAQALKGLEEGTAYKPDVIAVTGTNGKTTVTSLTGHMCERAGKTVRLAG---NISPA 157 Query: 157 AQDNRLTTPSPIYLAKA--LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 A D L L L S Q T +++A+ A + NL + Sbjct: 158 ALDVLLDVIEKKQLPDVWVLELSSFQLFTTYTLQAN---------------AATVLNLTQ 202 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274 DH+D+H + +AY AK R+F E ++ ++ +DA VMK A +A V++ G Sbjct: 203 DHLDWHGSMEAYGEAKARIFGE----KTVRVLNREDA---AVMKMA-SADAPVVTFGTDE 254 Query: 275 KF------IHLKK---VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL---- 321 +HL + A+ + + I K D P E+ V N + A L Sbjct: 255 PLEPSSFGLHLDRDMEWLAVMSPVEDGIVRRNKKND----APLEYAVQNLMPAGALKIRG 310 Query: 322 -------------CIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYV 360 C AI + A +L+ L P R E + T +S+G + Sbjct: 311 RHNASNALAALALCRAIHLPFAPLLQALSDYRGEPHRVELIATVKTVSYIDDSKGTNVGA 370 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 A + E KNI I++ G G D+D Sbjct: 371 TVAAVNGLGEKGRKNI-------ILIAGGLGKDQD 398 >gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 475 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 ++DSR + G IF A G DGHLF+PQA+ GA +VV + P L Sbjct: 35 TTDSREVVPGSIFFAKPGETTDGHLFVPQALDSGAALVVVDRELDVAG---------PQL 85 Query: 94 VVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 VV++T L A +R+ I+ +TG++GK++ + ++ I ++SG Sbjct: 86 VVEDTVVALGELAADVIARVRALGNLRIVGITGSNGKTTTKNLLRAILEQSG 137 >gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter sp. HTCC2170] Length = 425 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 87/409 (21%), Positives = 177/409 (43%), Gaps = 53/409 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R I+ +F A+ G+ +G+ + +A+ +GA +YS+ D S+ I Sbjct: 16 VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGA-------SYSIVDEEKYATSDKTI 68 Query: 93 LVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LV D T + L+ F Y ++ +TG++GK++ V + LSS + Sbjct: 69 LVKDVLQTLQKLATFHRNFYSAK---VIGLTGSNGKTTTKELVNAV-----LSS-KYKTI 119 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA-- 206 +TI + +N + P L+ L+ + T +++ ++H Q ++ + +A Sbjct: 120 ATIGNL--NNHIGVP--------LTLLTIKEDTEIAIVEMGANH---QKEIEFLCSLAQP 166 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN G+ H++ + + K L++ LL + + ADD + + G Sbjct: 167 DYGYITNFGKAHLEGFGSVEGVIEGKSELYDYLLANQKSIFLNADDPIQHKKL------G 220 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G+ K+ + + V++SVE D + L G + N A + Sbjct: 221 HYIKKYGFTTAKKEYFKIKFLISDPYVSLSVE--DIEINSKLIGNYNFTNCCAAVLMGKY 278 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 ++ + +E R + + +N G RI +D Y S+++ L+N +++ Sbjct: 279 FNVELNDIKTAIESYIPQNNRSQIIESN--GTRIILDAYNANPTSMKVALENFNSLSGEP 336 Query: 384 IIVVFG----CGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEK 427 I G G ++ + I +LD++++ +V D+ R++ P K Sbjct: 337 KIAFLGDMFELGATSNEEHQNIADLTSSLDISEVFLVGDNFYRTKTPLK 385 >gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 504 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 31/244 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----------QDF 82 V DSR + AG +F+A+ G + DGH + AI QGA A++ + + D Sbjct: 31 VEFDSRQVTAGGLFLALPGARVDGHEYATTAIGQGAVAVLAARPVDVPSIIVPPVTPTDS 90 Query: 83 SATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 +A I ++ P V++ K G H ++A+TG++GK+S F+ + Sbjct: 91 NADIYAHDPEGHGAAVIEALSKLARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLS 150 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G + G + T YL ++ +S++G+ H++ A R Sbjct: 151 MAGDTVAPPGSFNNEVGLPHTALRCTTHTRYL---VAEMSARGIGHIAHLA--------R 199 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKE 255 + ++ G+ N+G H+ ++ AK L E LP + A++ ADD + Sbjct: 200 ITPPRI--GAVLNVGSAHLGEFGSRANIAQAKGELVEA-LPAAADGGVAVLNADDPFVAA 256 Query: 256 VMKR 259 + R Sbjct: 257 MAPR 260 >gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758] Length = 256 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 24/227 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E++I V+ DSR G++FV + G + DGH FIPQ + QGA A + +D S+ Sbjct: 23 FLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVMEQGALATLTE-----EDPSS 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P + V++ K L A+ + ++ +TG+ GK+S + + R Sbjct: 78 L---TCPCIHVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTSTKETIASVLSR----- 129 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 + T +F +N + P I+ L+ + V H + H L I + Sbjct: 130 -KYNVLKTEGNF--NNGIGLPLTIF------NLTEEHEVAVLEMGIDHFGEMHELASISQ 180 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 TN+G H++ ++ AK +F+ L P S I+ DD Sbjct: 181 PDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNAS-VILNGDD 226 >gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 13/122 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + G +FV I G + DGH F +A+ +GA A++ + + Sbjct: 26 IEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGKGAAAVLADRPLT------GLPDG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 TP+L+V +T L A + ++ VTG++GK++V I + +GP Sbjct: 80 TPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVKELTAAILGK-------LGP 132 Query: 150 TS 151 T+ Sbjct: 133 TA 134 >gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2] Length = 471 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 + ++ +++ VS+D+R I +G +++A+ G +GH F A GA AI+ S Sbjct: 17 LDGQDCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGASAIIASEP------ 70 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + P++ V++T+ L L + + + +A+TG+SGK++V I +R G Sbjct: 71 ---VNVSIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEMCAAILERRG 126 >gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis MCE9] gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis MCE9] Length = 472 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 106/429 (24%), Positives = 169/429 (39%), Gaps = 64/429 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA+AIVVS+A S + + I VV L RL ++ +AV GT GK Sbjct: 64 GADAIVVSTAVSQGNPEVLKARSLHIPVVPRAIMLAELM--RL-----KSGIAVAGTHGK 116 Query: 127 SSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 ++ S V + GL +F IG ++S + +L T ++ Sbjct: 117 TTTTSLVASVLATGGLDPTFVIG--GRLNSAGANAKLGTGD-----------------YI 157 Query: 186 SVEAS-SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 VEA S H I +I TN+ DH+D + A F + LP A Sbjct: 158 VVEADESDASFLHLFPTIAII----TNIDSDHMDTYGHDVAKLRGAFVEFAQRLPFYGSA 213 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDF 300 II DD + +M C + G + H + + +N ++ V +GK+ Sbjct: 214 IICTDDENVRNIMPFI---SCSSTTYGLNEQ-AHFRAINIENNGTRMEFDVIRKYQGKEL 269 Query: 301 DFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TN 352 L +PG+ V NAL A + +G+ + + + L + + V RF VG N Sbjct: 270 PQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRFTQVGDFDVIQN 329 Query: 353 SRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 + GG+ V DY H ++ ++ R R + VF R R L Sbjct: 330 NGGGKFTVIDDYGHHPVEMDATIQAARGAWPTRRL-VFAFQPHRYTRTRDCFEDFVNVLG 388 Query: 409 LADIAIVTDDNPRSEDP-------EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQ 459 AD I+++ P E P RA + G P F+E N + + +++ Sbjct: 389 KADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDINDMP--KAILKIAKDG 446 Query: 460 DVLVVAGKG 468 DV++ +G G Sbjct: 447 DVVICSGAG 455 >gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO2] Length = 481 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ Y + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGYFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii ATCC 33806] gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii ATCC 33806] Length = 477 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 147/378 (38%), Gaps = 54/378 (14%) Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 + GT GK+S S Q +G+ SF IG Q N+ T + Sbjct: 116 IAGTHGKTSTTSMAVVAMQAAGMDPSFAIG--------GQLNKAGTNA------------ 155 Query: 179 SQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 QG H V + S L ++ D I ++ TN+ DH+D+ T +AYF F Sbjct: 156 HQGSGHCFVAEADESDASLLRYSPD-IAVV----TNIEPDHLDFFHTPEAYFQV-FDDFA 209 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----------FIHLKKVCAI 285 L ++ DD ++ + +R +V GY + ++ V Sbjct: 210 ARLTDTGVLVVCLDDEHAAALGERQKT---KVTVRGYGSAAAAERHPDIAYTVVESVAVA 266 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + V ++ + +PG V NA A + G D A + + + + V R Sbjct: 267 DQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRR 326 Query: 346 FEFVGT----NSRGGRIYVDYAHTSNSLEMILKNIR----TITSGRIIVVFGCGGDRDQG 397 FEF G + RG +Y DYAH + +L R SG++IVVF Sbjct: 327 FEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQ 386 Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIE 454 + AL LAD A+V D E P + I +++I + + N +T E Sbjct: 387 EFAAEFAEALSLADAAVVLDIYGAREQPHDGITSQLIIDRMTNKVVHQPNFSLVPQTVAE 446 Query: 455 MLNKQDVLVVAGKGHETV 472 + + D+++ G G TV Sbjct: 447 LAHPGDMVITMGAGDVTV 464 >gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes KPA171202] gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes KPA171202] Length = 471 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVYGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132] gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans ND132] Length = 483 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 134/318 (42%), Gaps = 44/318 (13%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S + I +GL PT I RL T Y A A Sbjct: 125 IAVAGTHGKTTTTSLLATIFTEAGLD-----PTVIIGG-----RLNT----YGANARL-- 168 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +G ++ EA RL I + TN+ +DH+D++ Q A + MR F Sbjct: 169 -GEG-DYLIAEADESDGSFLRLAPIITVV---TNIDKDHMDFYDNQDAIDLSFMR-FMNS 222 Query: 238 LPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 P ++ DD + ++ KR + +G Q K ++ + H + + Sbjct: 223 TPFYGMNVVCGDDEGVQRLLPLIKRPY----LTYGLGKQNKL--RGEIVSSHLRSLFKVW 276 Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 ++G+++ + PG V NAL G+ + +G+D +++ L V RFE G Sbjct: 277 LDGEEWGEVTVAQPGTHNVLNALACIGVALEVGLDKEEIIQGLGNFGGVGRRFERKG-EK 335 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI--AL 407 +G + DY H I+ N+RT R++V F R + + G+ A Sbjct: 336 KGVIVVDDYGHHPAE---IMANLRTAKECYPDRRLVVAFQP--HRFSRTKALFGEFCKAF 390 Query: 408 DLADIAIVTDDNPRSEDP 425 ADI ++T+ P SE P Sbjct: 391 GDADILLLTEIYPASESP 408 >gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Methylophilales bacterium HTCC2181] Length = 448 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 152/364 (41%), Gaps = 48/364 (13%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S DSR ++ IF+AI G DG +I AI +G+ I+ SS +SN I Sbjct: 32 SIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGSSWIITSSKNH--------KSNRCIY 83 Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 V NT++ L AS L G+ I+A+TG++GK++ V I +Q P + I Sbjct: 84 -VKNTKETLCKIASYLVGEVSPKIIAITGSNGKTTTKEMVANIL-------YQHYPKNEI 135 Query: 154 --SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----G 207 + +N + P ++ K + T V +E + Q + + IA Sbjct: 136 LVTKGNLNNDIGLPLTLFNLK-------KNHTIVVLEMGMN--HQDEITKLCKIAPPDIA 186 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ ++ AK +E+L K AI+ DD Y + ++ Sbjct: 187 VITNIGEAHLENFSSKNGIAKAK----KEILLGAKKNGIAILPRDDVYFNYL--KSDCLY 240 Query: 265 CRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R +S G + I L + + I++E L G+ + N A + Sbjct: 241 LRCISFGINKNSNIRLDLSSKVLTVDEEKINIES-------SLLGKENLMNMAAAVSVAN 293 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 A+ + + +++ ++ + + GR E T S I Y +S+ M + + + Sbjct: 294 ALELPTETIIKGMKTIDSIEGRLEVKITASNIKIIDDTYNSNPSSMMMAIDVLDQFKQKK 353 Query: 384 IIVV 387 I++V Sbjct: 354 ILIV 357 >gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 553 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 30/239 (12%) Query: 26 RERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81 R+ +N V S+DSR I+ F A+ G DGH F+ +A+ GA A+VVS + Sbjct: 26 RKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFDGHAFVERAVRAGAVALVVSDLKCAEL 85 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + A + P ++V++T L A+ + ++A+TG+ GK+S + Sbjct: 86 WQAEL----PTILVEDTLTALQKLAAYYRQNYLHTLVAITGSVGKTSTREMI-------- 133 Query: 142 LSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197 + + PT +S + +N + P + ++ ++ G+ H L Q Sbjct: 134 --AAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHAGDLTKLSRLAQP 191 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + I TN+G HI+ +Q A AK + L + ++ ADD + +++ Sbjct: 192 DIAVI-------TNIGYCHIEQLGSQMAIMRAKAEIING-LKADGVLLLNADDPFLRQL 242 >gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL110PA1] gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL110PA2] gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL086PA1] gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL082PA1] gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL053PA2] gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL092PA1] Length = 471 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes SK187] gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes J165] gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes SK137] gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes SK187] gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes J165] gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes SK137] gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL013PA1] gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL074PA1] gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL087PA2] gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL083PA1] gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL059PA1] gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL046PA2] gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL036PA1] gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL036PA2] gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL063PA1] gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL063PA2] gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL007PA1] gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL056PA1] gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL005PA4] gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL050PA1] gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL050PA3] gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL036PA3] gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL067PA1] gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL027PA1] gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL002PA1] gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL002PA2] gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL037PA1] gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL053PA1] gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL045PA1] gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL005PA1] gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL005PA2] gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL005PA3] gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL002PA3] gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL038PA1] gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL059PA2] gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL046PA1] gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL030PA2] gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL096PA2] gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL096PA3] gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL013PA2] gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL043PA2] gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL043PA1] gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL087PA3] gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL083PA2] gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL087PA1] gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL020PA1] gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL025PA2] gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL099PA1] gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes 266] Length = 471 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL078PA1] Length = 471 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 464 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 50/378 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + S+D+R +F A+ G D H ++ A+AQG A+VV + Sbjct: 22 ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECEI------- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P LVV +TR L A L K +A+TG+SGK++V +I Q+ + Sbjct: 75 --DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 132 Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203 + + +F +N L P + + L + Y + G H+ A + + Q Sbjct: 133 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 182 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260 A N+ H++ + AK ++ L + AI+ + + KE+ R Sbjct: 183 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIDSR- 238 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311 + S Y G A + + V + + G F P LP G+ Sbjct: 239 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 290 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369 V NAL A L +++G V LE+ +V GR V N +++D ++ +N S+ Sbjct: 291 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDSYNANVDSM 348 Query: 370 EMILKNIRTITSGRIIVV 387 + + + + RI V Sbjct: 349 KSAISVLENYPAYRIFAV 366 >gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica DSM 7489] Length = 425 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 75/366 (20%), Positives = 143/366 (39%), Gaps = 48/366 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91 V +D+R I IF A+ G+ +G+ + +A+ +GA A+V Y++ N Sbjct: 16 VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAI---------NNK 66 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 ++VD+ + L + ++ +TG++GK++ ++ + Q+ + +G Sbjct: 67 FILVDDVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNL- 125 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA----- 206 +N + P L+ L+ Q T +++ + + L I ++ Sbjct: 126 -------NNHIGVP--------LTLLTIQKDTEIAIVE----MGANHLKEIAFLSSLAEP 166 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN G+ H++ + + K L++ L + + ADD + + G Sbjct: 167 DYGYITNFGKAHLEGFGSTEGVIQGKSELYKYLTTNQKHVFLNADDPIQESKL------G 220 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V +G+ + K+ + VTI V KD L G + N A + Sbjct: 221 TYVKKIGFSSNNSNYFKIELLSADPFVTIKV--KDITITTKLVGAYNFTNCCAAIIMGKY 278 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 I L+ E +E R + + N G +I +D Y S+ L N I + Sbjct: 279 FNIALPLIKEAIEGYTPANNRSQILEQN--GYKIILDAYNANPTSMAAALDNFNGIKAAH 336 Query: 384 IIVVFG 389 IV G Sbjct: 337 KIVFLG 342 >gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913] Length = 462 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I DF L N L+ Q RK+ +++D+R + G +F+A+ G DGH FI QA Sbjct: 1 MIPMDFDWLANVLAT-DYQGDNRKVININTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQ 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA ++V A + ++ VV +TR L + + + +A+TG+ G Sbjct: 60 KGAIGVIVDHA---------VDTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVG 110 Query: 126 KSSVASFVQQICQRSG 141 K++V I G Sbjct: 111 KTTVKEMCAAILSSKG 126 >gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium ammoniagenes DSM 20306] Length = 511 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 146/386 (37%), Gaps = 59/386 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQ- 80 V DSR + G +F+ G K DGH F +AI QGA AIVV ++ Sbjct: 31 VEFDSRKVAPGGLFLCFPGAKVDGHDFAEKAIEQGAVAVLAAREVGVPAIVVQPTGRIEG 90 Query: 81 -----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 D A + VV ++L +H +I+ VTG++GK+S + Sbjct: 91 DGANADIYANDADGSAAAVVRALSDLAHYVTTKLTSEHDLSIIGVTGSAGKTSTKDLIAT 150 Query: 136 ICQRSGLS-----SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + SF +IG T D + YL ++ LS++G+ H+ Sbjct: 151 ILRNDGETVAPPGSFNNEIGHPYTALRCDVDTK-------YL---VAELSARGIGHI--- 197 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL--LPKESPAII 246 +H D G N+G H+ +++ AK L E L + + A++ Sbjct: 198 -------KHLTDIATPRIGVVLNVGTAHLGEFGSRENIAIAKGELVESLPDVSEGGVAVL 250 Query: 247 YADDAYSKEVMKRA-------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298 ADD + + KR +A + Y I L V + T+ G K Sbjct: 251 NADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNITLDNVA----RPSFTLHAPGVK 306 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 + G QV N+L AA I G+ V + L V T + G I Sbjct: 307 PVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHRNASAHRMDVHTRADGVTI 366 Query: 359 YVD-YAHTSNSLEMILKNIRTITSGR 383 D Y +S+ + + TSGR Sbjct: 367 INDSYNANPDSMRAAIAALGYTTSGR 392 >gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 466 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 48/378 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + S+D+R +F A+ G D H ++ A+AQG A+VV + Sbjct: 22 ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVV-------ERECEC 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P LVV +TR L A L K +A+TG+SGK++V +I Q+ + Sbjct: 75 EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 134 Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203 + + +F +N L P + + L + Y + G H+ A + + Q Sbjct: 135 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 184 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260 A N+ H++ + AK ++ L + AI+ + + KE+ R Sbjct: 185 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIDSR- 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311 + S Y G A + + V + + G F P LP G+ Sbjct: 241 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 292 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369 V NAL A L +++G V LE+ +V GR V N +++D ++ +N S+ Sbjct: 293 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDSYNANVDSM 350 Query: 370 EMILKNIRTITSGRIIVV 387 + + + + RI V Sbjct: 351 KSAISVLENYPAYRIFAV 368 >gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9635] gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus aureus A9635] Length = 449 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ + T YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQPTD----YLVTELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+ + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHENLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ ++ Y Y + + + + L Q + I++K ++ Sbjct: 208 QIYKNQTEED-----YLICNYHQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGV 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ I+ E LPGE + N L A CI G+ +++ L + R ++V Sbjct: 263 RI-INTED------LVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYV 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Lactobacillus johnsonii DPC 6026] Length = 455 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 146/371 (39%), Gaps = 36/371 (9%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAEATLWKKGHE------G 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 + ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 73 MPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLSK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDHPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + T V G F P+ G+ V NAL A + Sbjct: 236 EKSTFGFREEDTVFATTFRSY-MHHATFEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITSGR 383 G + + + L R ++ +G G +D + SN ++ +T+ Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345 Query: 384 IIVVFGCGGDR 394 V+ GG R Sbjct: 346 GQVMVEDGGRR 356 >gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL097PA1] Length = 471 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio angustum S14] Length = 460 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 34/328 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R+I + +F+A+ G + D H F A GA+A++VS ++ Sbjct: 24 IAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAKALLVSKPLPVE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSF 145 P LVV +TR L + + L + E +A+TG+ GK++V I G Sbjct: 75 LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTVKEMSAAILANKG---- 130 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 Q+ +T +F D +P+ L L + + A+ + + +K Sbjct: 131 QV--LATAGNFNND----IGAPLTL---LRLTPEYQYAVIELGANHQNEISYTTNLVKPN 181 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAG 264 N+ H++ + Q AK +FE L+ + I + ++D + + H Sbjct: 182 VALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADH--- 238 Query: 265 CRVLSV---GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +VL+ +Q + + T+ D L G V NAL AA L Sbjct: 239 -QVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPIGKIDINLALAGIHNVSNALAAAAL 297 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +++G A V LE + V GR + Sbjct: 298 TVSLGATLADVKAGLETMANVKGRLDIT 325 >gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae COH1] Length = 455 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 NQ+S ++ + + + DSR+I G +F+ + G + DGH FI A GA A + Sbjct: 16 NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S P L+V + K + A K +++AVTG++GK++ + Sbjct: 68 -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + +IG T+ +D I L +L G HV E Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 172 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + + R+ + LI G H+++ +++ KM++ + + S I+ A Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217 Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D Y ++ ++ H+ +V + + K +T + Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG++ NA+VAA + + + +++ LE L + R E+ ++ G I Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322 Query: 361 D-YAHTSNSLEMILKNIRTI 379 D Y ++ +IL+ I Sbjct: 323 DVYNANPTAMRLILETFSAI 342 >gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli 2362-75] Length = 452 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 139/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPE---- 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 A NL H++ + AK +F L P+ AI+ AD+ S Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL-PENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ + D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQIPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165] Length = 464 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R +F A+ G K D H ++ +AI QG A+VV ++ N P Sbjct: 28 ISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIEQGCVALVVERELAV---------NVPQ 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++V++TR L A L + +A+TG+SGK++V +I Q+ Sbjct: 79 IIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316] gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 2603V/R] gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316] gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae A909] gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae CJB111] gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae H36B] Length = 455 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 NQ+S ++ + + + DSR+I G +F+ + G + DGH FI A GA A + Sbjct: 16 NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S P L+V + K + A K +++AVTG++GK++ + Sbjct: 68 -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + +IG T+ +D I L +L G HV E Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIILEMGQDHL---GDIHVLSE 172 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + + R+ + LI G H+++ +++ KM++ + + S I+ A Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217 Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D Y ++ ++ H+ +V + + K +T + Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG++ NA+VAA + + + +++ LE L + R E+ ++ G I Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322 Query: 361 D-YAHTSNSLEMILKNIRTI 379 D Y ++ +IL+ I Sbjct: 323 DVYNANPTAMRLILETFSAI 342 >gi|296166019|ref|ZP_06848471.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898640|gb|EFG78194.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 486 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 11/188 (5%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + AY E L P + ++ DD + + +R G RVL Sbjct: 189 TNIETDHLDFYGSADAYVGVFDAFVERLAPGGA-LVVCVDDPGAAALAERTAELGIRVLR 247 Query: 270 VGYQGKFIHLKKVCAIHNK-----QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 G H + + + + ++ E +PG NAL A + Sbjct: 248 YGSGPGGDHAATLLSWEQQGTEAVAHIQLAGESHPRVMRLSVPGRHMALNALGALLAAVE 307 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----T 380 IG VL+ L V RFE VG N+ R++ DYAH + L +RT+ Sbjct: 308 IGASVDAVLDGLAGFEGVRRRFELVG-NAGSVRVFDDYAHHPTEISATLAAVRTVLEQSG 366 Query: 381 SGRIIVVF 388 GR +VVF Sbjct: 367 GGRSLVVF 374 >gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas mendocina ymp] Length = 456 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 34/243 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I G +FVA+ G + DGH ++ + A+GA A +V + + P Sbjct: 28 VGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAAKGAVAALVEREVA--------NAPLPQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +TR L + + AVTG+SGK+SV + I R+GL+ + Sbjct: 80 LLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKTSVKEMLAAIL-RAGLNGAVLATRGN 138 Query: 153 ISSFAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +N L P +P + A + G HV A + L + ++ I Sbjct: 139 L-----NNDLGAPLTLLELAPEHRAGVIEL----GANHVGEIAYTVSLTRPQVTII---- 185 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN G H+ + AK + E L ++ A++ DD +RA AG + Sbjct: 186 ---TNAGNAHVGEFGGPEKIVQAKGEILEG-LAQDGVAVLNLDDKAFSTWQRRA--AGHQ 239 Query: 267 VLS 269 VLS Sbjct: 240 VLS 242 >gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis ATCC 903] Length = 504 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 50/364 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I G +FV + G + DGH FI A GA A FS + P ++V Sbjct: 80 DSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FSEKVVEGHPYILV 128 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ A+ K ++ AVTG++GK++ + Q+ + L+ G Sbjct: 129 EDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQG------- 181 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLIAGSFTNL-G 213 +N + P + +G + +E H D H L + + L G Sbjct: 182 -NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLIG 233 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGCRVLSV 270 H+++ + + K+++ + +P+ ++ AD DAY E V+ Sbjct: 234 EAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVDAYLPE--------KQTVVRF 284 Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + FI I K +T + P+ G++ NA++AA + + G+ Sbjct: 285 GPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSE 340 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS---GRII 385 A + + E L + R E+ S G I D Y ++ +IL+ TI + GR + Sbjct: 341 AAIRDSFETLQLTRNRTEWKKA-SNGADILSDVYNANPTAMRLILETFSTIPANPNGRKL 399 Query: 386 VVFG 389 V Sbjct: 400 AVLA 403 >gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748] gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748] Length = 460 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 135/344 (39%), Gaps = 54/344 (15%) Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HP 114 H+ + G +A+V S+A IR + P +V + L S + Sbjct: 54 HIGHNKEYVNGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDV 104 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + +AV G GK+S S + QI L PT I YL K Sbjct: 105 TDGIAVAGAHGKTSTTSMIGQI-----LVEADADPTVIIGGEVD----------YL-KGS 148 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S L + V + S + R I + TN+ DH+D+++T NA F Sbjct: 149 SCLGKGHFSVVEADESDGSFLKLRPHTIVI-----TNIEDDHMDHYKTMDNLLNAFCE-F 202 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNK 288 E LP+ AI+ D+ + +M R + ++ G Y K IH +++ Sbjct: 203 VETLPESGKAIVCGDNENIRYIMSRVNR---NFITYGLSDNNDYVAKNIHYVDSTLVYDV 259 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +++E +PGE V N+L VA C G+++ ++ + L K Sbjct: 260 YHKGVNIE----RIRLRVPGEHNVLNSLAAFIVAHDCC---GVETRIITKGLGKFIGAKR 312 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE G + G + DYAH ++ LK + + R+I VF Sbjct: 313 RFETKG-HVAGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF 355 >gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16] gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16] Length = 856 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 35/312 (11%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++F+ G+ P ++AV+GT+GK++ + I SGL ++G T T + Q R+ Sbjct: 460 TMFSDGDDGRIP--VVAVSGTNGKTTTVRLITHIMATSGL---RMGMTGTDGVYIQGERI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DY 219 T A + L V E + GL + L + TN+G DH+ Y Sbjct: 515 DTGDCSGPRSARNVLLHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSY 574 Query: 220 HQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-G 271 + + K + + + P P ++ DA V AH+ ++ Sbjct: 575 INSVEDLAVLKSVIVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHR 634 Query: 272 YQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE----FQVYNALVAAGLCIA 324 QGK F+ + A +V I+V PL FQV NA+ + A Sbjct: 635 AQGKRVVFVDGADIVASEGDTEVRIAVAE------VPLTRNGTIGFQVDNAMSSIAAAWA 688 Query: 325 IGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +GID + L PGRF + RG + DY H +++ + + TI Sbjct: 689 LGIDWPTIRRGLATFVNDAQTAPGRFNVF--DYRGATLIADYGHNPDAILALCNAVETIP 746 Query: 381 SGRIIVVFGCGG 392 + R +VV G Sbjct: 747 AKRRMVVISGAG 758 >gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium efficiens YS-314] Length = 528 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 31/241 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL----------QDFSAT 85 DSR + AG +F+A+ G + DGH + AI QGA A++ + + D +A Sbjct: 58 DSRQVTAGGLFLALPGARVDGHEYATTAIGQGAVAVLAARPVDVPSIIVPPVTPTDSNAD 117 Query: 86 IRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 I ++ P V++ K G H ++A+TG++GK+S F+ + +G Sbjct: 118 IYAHDPEGHGAAVIEALSKLARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAG 177 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + G + T YL ++ +S++G+ H++ A R+ Sbjct: 178 DTVAPPGSFNNEVGLPHTALRCTTHTRYL---VAEMSARGIGHIAHLA--------RITP 226 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMK 258 ++ G+ N+G H+ ++ AK L E LP + A++ ADD + + Sbjct: 227 PRI--GAVLNVGSAHLGEFGSRANIAQAKGELVEA-LPAAADGGVAVLNADDPFVAAMAP 283 Query: 259 R 259 R Sbjct: 284 R 284 >gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759] gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759] Length = 460 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 125/325 (38%), Gaps = 62/325 (19%) Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQI 136 ++F A + P+L TR ++L G+ EN +AV+GT GK++ S + I Sbjct: 84 EEFKAAVEKGIPML----TR-------AQLLGQIMENYKYSIAVSGTHGKTTTTSMLSYI 132 Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 L PT ++ N S ++ +A Y +S Sbjct: 133 -----LIDADTDPTISVGGILDSIGGNIRVGKSEYFVTEACEYTNS-------------- 173 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 K N+ DH+D+ + +F PKE I+ D Y Sbjct: 174 -----YHAFKPFISIILNVDADHLDFFKDIDE-IAESFHVFATKTPKEGLVIVNGDMEYY 227 Query: 254 KEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQ-------QVTISVEGKDF-DFL 303 V++ + CR+++ G Q K+ + HN + T+ V+GK+ D Sbjct: 228 DTVVR---DLECRIVTFGKGTQNKY-------SAHNIRFDDLGHPTYTLVVDGKEVTDIT 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 + GE VYN+L A + +GI ++ + L + RFE+ GT R+ DYA Sbjct: 278 LRVFGEHNVYNSLSAIAAALELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYA 337 Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388 H + LK + + + VF Sbjct: 338 HHPTEISATLKAAQNTSYNELWCVF 362 >gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thiomicrospira crunogena XCL-2] gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 474 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 10/108 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R +++G +++AI G DGH FI +A+ QGA A+++S + + P Sbjct: 31 VSTDTRTLKSGALYIAIKGEHFDGHAFIGEAVRQGAVAVLISEP---------METVVPA 81 Query: 93 LVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQR 139 ++VD+TR FA+ + + ++ VTG++GK++ + + I + Sbjct: 82 VLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGSNGKTTTKALLAHILSK 129 >gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia felis URRWXCal2] gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis URRWXCal2] Length = 449 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 45/245 (18%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N +AVTGT+GKS+ + + I +GL G P AKA Sbjct: 105 NFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGV--------------PALQAKA-- 148 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S G +E SS LD + K+ N+ DH+D HQ Y AK ++F+ Sbjct: 149 --SKDGYI---LELSSFQLDLVKTFTAKI--AVLLNITPDHLDRHQDMTGYIAAKSKIFD 201 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + K+S A I D+ Y +E+ +L + K I + N ISV Sbjct: 202 R-MDKDSYAAINIDNYYCREIF--------MLLQQEQRIKLIPFSVTKILKN----GISV 248 Query: 296 EG---KDFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 G D D + LP G N + + IG++S +LE + +P R Sbjct: 249 VGDKINDNDISYKLPFNKNLQGTHNCENIAASYAVAKIIGVESKKILESISSFQSLPHRM 308 Query: 347 EFVGT 351 +++G+ Sbjct: 309 QYIGS 313 >gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus agalactiae ATCC 13813] Length = 486 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 NQ+S ++ + + + DSR+I G +F+ + G + DGH FI A GA A + Sbjct: 47 NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 98 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S P L+V + K + A K +++AVTG++GK++ + Sbjct: 99 -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 151 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + +IG T+ +D I L +L G HV E Sbjct: 152 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 203 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + + R+ + LI G H+++ +++ KM++ + + S I+ A Sbjct: 204 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 248 Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D Y ++ ++ H+ +V + + K +T + Sbjct: 249 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 294 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG++ NA+VAA + + + +++ LE L + R E+ ++ G I Sbjct: 295 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 353 Query: 361 D-YAHTSNSLEMILKNIRTI 379 D Y ++ +IL+ I Sbjct: 354 DVYNANPTAMRLILETFSAI 373 >gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS] gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS] Length = 1299 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 34/310 (10%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L V + R L+ A +P I+AVTG++GK+S + ++ + Q G+ PT Sbjct: 505 PRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKR---PT 561 Query: 151 STISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 ++F N LT + + A S+LS +G +V ++ Sbjct: 562 KNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGGPRPNV--------------LRPEV 607 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T++G H++Y + Q K +F +L+ + + I D Y +++RA AG Sbjct: 608 AMITSIGEAHLEYFGSPQGVAEVKSNVF-DLMSRGTAVIPRDADTYDY-MVQRARAAGAT 665 Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +S G + HL A V + G+ + G N++ A G+ A+ Sbjct: 666 TVSFGAHPSADAHLLSYSAADGV--VEAEIFGERITYELGALGRHFARNSVGALGVVAAL 723 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN------SLEMILKNIRT 378 G+D L V GR S GR +D A+ +N ++EM+ + T Sbjct: 724 GLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERA-T 782 Query: 379 ITSGRIIVVF 388 GR I V Sbjct: 783 PPRGRRIAVL 792 >gi|42524578|ref|NP_969958.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus HD100] gi|48428296|sp|P61676|MURC_BDEBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|39576787|emb|CAE80951.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus HD100] Length = 453 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 87/371 (23%), Positives = 151/371 (40%), Gaps = 58/371 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S I + LS PT I + L K+ + L Sbjct: 108 IAVAGTHGKTTTTSMTSAIFLEANLS-----PTIVIGGRFE-----------LIKSTAML 151 Query: 178 SSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQT----QQAYFNAKMR 232 S + EA H+L I +I TN+ DH+++ +T Q+++ + ++ Sbjct: 152 GSG--EWLVAEADESDGSFHKLSPEIAII----TNIDSDHLEHFKTFENVQKSFHDFALK 205 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--------GKFIHLKKVCA 284 + P I+ DD +++ + N R+L G+ G+ H A Sbjct: 206 V-----PFYGKVIVCGDDPLVRQIFE---NFPKRILFYGFDEKNDLVVTGEHGHY----A 253 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +H ++ + + +F +PG NA+ A +A GI A + L++ V Sbjct: 254 VHRNDRL-LGTKHLVGEFDLKVPGRHNALNAVAAICAGVAAGIPFATCAKGLQRYEGVDR 312 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG- 403 RF F G +G ++Y DY H + +L+ R + +VVF + + Sbjct: 313 RFHFKG-EKKGIKVYDDYGHHPTEVRAVLQAFREKYPKQRLVVFFQPHRYSRTQHCWHDF 371 Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457 A AD ++TD P E P EK+ +E+ H + + ++ A + + ML Sbjct: 372 TTAFMEADQVLLTDIYPAGEAPIPGVTSEKLASEMKHEHAQYFVRDDK--ATQKILGMLK 429 Query: 458 KQDVLVVAGKG 468 + DV V G G Sbjct: 430 EGDVFVTLGAG 440 >gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus agalactiae 515] Length = 455 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 NQ+S ++ + + + DSR+I G +F+ + G + DGH FI A GA A + Sbjct: 16 NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S P L+V + K + A K +++AVTG++GK++ + Sbjct: 68 -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + +IG T+ +D I L +L G HV E Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIVLEMGQDHL---GDIHVLSE 172 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + + R+ + LI G H+++ +++ KM++ + + S I+ A Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217 Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D Y ++ ++ H+ +V + + K +T + Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG++ NA+VAA + + + +++ LE L + R E+ ++ G I Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322 Query: 361 D-YAHTSNSLEMILKNIRTI 379 D Y ++ +IL+ I Sbjct: 323 DVYNANPTAMRLILETFSAI 342 >gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parauberis NCFD 2020] Length = 456 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/417 (20%), Positives = 166/417 (39%), Gaps = 54/417 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + +N++ DSR I G +F+ + G + DGH FI A +GA A FS Sbjct: 20 EFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEKGAAAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P L+V++ A K +++AVTG++GK+S ++ + Sbjct: 69 EHPIEGKPYLLVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 +T ++ + I L + ++ + V H D H L I Sbjct: 123 ------ATTYKTYKTQGNYN--NEIGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + T + H+++ +++ KM++ + + +S I+ A ++ Sbjct: 175 QPRIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGM---DSHGILLAP---GDPIIDPYLP 228 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 V+ G +G+ I +K + +K +T + D PL G++ NA++AA + Sbjct: 229 DNQMVIRFG-EGEEIFVKDIK--EDKNSLTFTTNVLDQAVTLPLSGKYNATNAMIAAYVG 285 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK---NIRT 378 + + ++E LE + + R E+ + G I D Y ++++IL+ NI Sbjct: 286 KLLAVSDEDIVEALESVQLTKNRTEWKKA-ANGADILSDVYNANPTAMQLILETFSNIPN 344 Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 G+ I V + + K+ + L+ PEKI I +G Sbjct: 345 NPDGKKIAVLADMKELGPDSVSLHSKLIMSLS--------------PEKIDTLIFYG 387 >gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9202] Length = 457 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 78/336 (23%), Positives = 144/336 (42%), Gaps = 53/336 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR + +F+AI G DGH F+P+ + +G +++V+ + SN P Sbjct: 31 ISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVIKKG-----MQRLLPSNFPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 VV++T + A K I+A+TG+ GK++ + + + G ++F Sbjct: 86 WVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG TI + ++++ + +G+ + L ++ I +I Sbjct: 146 EIGVGLTILATDIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 TN+G HI +++ +AK + + L P E II A+D + ++ +K + Sbjct: 190 ----TNIGTAHIGLLGSKKNITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKESWKGRV 244 Query: 264 -GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++L++ Q + F + +N + TI +E F+ L G N L A + Sbjct: 245 IKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAV 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +GID A +F+FV S GGR Sbjct: 303 SKELGIDFASF-----------NKFDFV---SFGGR 324 >gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Mannheimia haemolytica PHL213] Length = 464 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 151/378 (39%), Gaps = 50/378 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + S+D+R +F A+ G D H ++ A+AQG A+VV + Sbjct: 22 ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVAQGCVAVVVERECEI------- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P LVV +TR L A L K +A+TG+SGK++V +I Q+ + Sbjct: 75 --DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTACEQE 132 Query: 147 IGPTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIK 203 + + +F +N L P + + L + Y + G H+ A + + Q Sbjct: 133 V-----LYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIAYTTAIAQPD----- 182 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260 A N+ H++ + AK ++ L + AI+ + + KE+ R Sbjct: 183 --ACLVNNVAAAHLEGFGSLAGVAQAKGEIYRG-LKENGKAIVNLAFYYPQWQKEIGSR- 238 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQ 311 + S Y G A + + V + + G F P LP G+ Sbjct: 239 -----EMQSFSYIGSD---SDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHN 290 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SL 369 V NAL A L +++G V LE+ +V GR V N +++D + +N S+ Sbjct: 291 VSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC--LFIDDTYNANVDSM 348 Query: 370 EMILKNIRTITSGRIIVV 387 + + + + RI V Sbjct: 349 KSAISVLENYPAYRIFAV 366 >gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus salivarius SK126] Length = 457 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 36/357 (10%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + IN++ DSR I AG +F+ + G + DGH FI A GA A ++ ++ A Sbjct: 21 YEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDNGALA-----TFTEKELPA 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV D F L A L K +++AVTG++GK++ + I + + Sbjct: 75 ---DQVHILVDDALEAFQKLAAYYLE-KTEVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T +G H+++ ++ KM++ ++ +P S ++ +D ++ + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSD-----PIVNPFLPS 230 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 V+ G G + + + K +T S D P+ G++ NA+VAA + Sbjct: 231 NLEVVRFG-DGAELTVSDLTEF--KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVAK 287 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 +G+ +L L L + R E+ + G I D Y ++++IL+ I Sbjct: 288 HLGVTEENILSALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 343 >gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Methylobacterium radiotolerans JCM 2831] Length = 482 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 153/382 (40%), Gaps = 44/382 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER I+ S D+R +Q G +F AI G+ DGH F+P A+ + +A + + Sbjct: 22 ERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDALGR-----GAGAAVVSAARAEAL 76 Query: 87 RSNTPILVV-----DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 ++ P+L V D + + + ++AVTG+ GK+ ++ + G Sbjct: 77 AAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTGSVGKTGTKEALRHVLSEQG 136 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD------ 195 + S+ + +N P+ L + + + GV + + +HG + Sbjct: 137 --------ETHASAASYNNHWGV--PLTLTR-MPRSARYGVFEIGM---NHGAEIVPLTA 182 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 Q R D I LI T + HI++ + A +AK +F L P AI+ D + Sbjct: 183 QVRPD-IALI----TTIAPAHIEHFASLAAIADAKGEIFSGLRPG-GVAILNRDAPHFDR 236 Query: 256 VMKRAHNA-GCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + A + RV++ G + + K+ + + +V G+ + G Sbjct: 237 LAAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAAL 296 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM- 371 N+L + ++G D A L L GR E GG Y VD ++ +N + + Sbjct: 297 NSLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVR 356 Query: 372 ----ILKNIRTITSGRIIVVFG 389 L I T GR I V G Sbjct: 357 AALATLAGIETGPRGRRIAVLG 378 >gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus parainfluenzae T3T1] Length = 456 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +++D+R + +F A+ G D H ++ +A+ QGA A+VV A + Sbjct: 25 VENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVEQGAAALVVQQANT--------EIA 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 TP LVV +TR L A L K +A+TG+SGK++V I Q++ Sbjct: 77 TPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKTTVKEMTASILQQTA 128 >gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas fluorescens Pf-5] Length = 455 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + + + VS DSR IQAG +F+A+ G + DGH ++ + A+GA A +V Sbjct: 22 DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 S P L+V +TR L + + AVTG+SGK++V + I + G Sbjct: 74 DSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRG 128 >gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC 23834] gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC 23834] Length = 451 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 81/364 (22%), Positives = 153/364 (42%), Gaps = 42/364 (11%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + + A L GK I+A+TG++GK++V S V +C+ GL + G T A ++R Sbjct: 104 VEILAHELSGKR-NKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTPVLEAYEDR 162 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + +++ +E SS L+ D + A + N+ DH++ + Sbjct: 163 QEQSADVWV----------------LELSSFQLEN--TDHLNAAAAAVLNISEDHLNRYD 204 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 Y +AK ++F +I ADDA + MKR +G V Q + + Sbjct: 205 DLLDYAHAKDKIFR----GSGVQVINADDALCR-AMKR---SGREVRRFSLQQETDYWFD 256 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 + + K + D PL G N L A LC AIG+ +L H+ Sbjct: 257 AASGYLKHGAETLIAAAD----IPLQGLHNAANVLAALALCEAIGLPREQLLRHVRTFKG 312 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401 +P R E +G + G +++D + +N + I + S ++ G G + Q P+ Sbjct: 313 LPHRVEKIG--EKNGVVFIDDSKGTN-VGATEAAIAGLQSPLFLIAGGQG--KGQDFTPL 367 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461 + + ++ +D P +IR ++ ++ + EA++TA + D+ Sbjct: 368 KNVLPGKARAVLLIGEDAP------QIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDI 421 Query: 462 LVVA 465 ++++ Sbjct: 422 VLLS 425 >gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase [Chromobacterium violaceum ATCC 12472] Length = 453 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 139/344 (40%), Gaps = 25/344 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ V +DSR Q G +FVA+ G + D H F+ + +A+GA A+ V + L S Sbjct: 21 EVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVARGAAAL-VRDGFELAGASL---- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I D+TR L A+ P + VTG++GK++V + I + + + Sbjct: 76 ---IQAGDDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVKEMLAAILRAHAGADAVL- 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 +T +F D I L L L Q V +H + L G+ + Sbjct: 132 --ATAGNFNND--------IGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLTGLTRPQVA 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N R H + + + AK +FE L+ A++ ADDA + RA R Sbjct: 182 LVNNAMRAHFGHFGSTEDVARAKAEIFEGLI-DAGVAVVNADDANLP--LFRAAAGSHRQ 238 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 LS G + + + + T+ P PGE V NAL AA +A+ + Sbjct: 239 LSFGLGLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAAAAALALEV 298 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 A + E L GR + S G +D ++ +N M Sbjct: 299 PLAAIAEGLSAFAGAKGRLQI--KQSPRGLTVIDDSYNANPDSM 340 >gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Hydrogenobacter thermophilus TK-6] gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Hydrogenobacter thermophilus TK-6] Length = 436 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 98/474 (20%), Positives = 192/474 (40%), Gaps = 84/474 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FVA+ G + DGH F +A ++GA +V + ++V Sbjct: 30 DSREVKEGNVFVALRGGRHDGHDFAQEAFSRGAVGAIVQRGIK-------VPKGKFYVLV 82 Query: 96 DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGLSSF 145 D+T + L +L+ RL+ ++ V G++GK++ + S + ++C+ + Sbjct: 83 DDTLEALRRIALYRRRLF---TGRVIGVAGSAGKTTTKEMIAFLLSKIGKVCKTPKNYNS 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 QIG +I++F +D + V + AS G ++ + K Sbjct: 140 QIGLPFSIANFEEDCQFWV--------------------VEMGASQKGDVKNLVKLAKPH 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IYADDAYSKEVMKRAHNAG 264 T +G +H++ +FE++ ++ + Y Y + Sbjct: 180 VRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAVLPKYVSHCYELK--------- 230 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V++ G G L+ +K+ +T VE D +P + NAL + G+ A Sbjct: 231 -NVITFGEGGD---LQATNIKLSKEGITFQVE--DVSLSLRVPSLAVLENALCSLGVLKA 284 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382 +G + + HL P RF + +G + +D + +N S+ L ++ Sbjct: 285 LGYNWKELSHHLANFSPAPQRFHLI---RKGSFLIIDDTYNANPPSVRKALLSLSLFDGY 341 Query: 383 RIIVV---FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 RI ++ G + R + GK+ +L D I + R E +R HG+ Sbjct: 342 RIALLGDMLELGPMSEAYHREV-GKLCAELGIDACIFYGTHMRFAYEECLR----HGVLC 396 Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 + ++ EA+R ++ + V++V G + M ++ D++REI Sbjct: 397 Y-HSSSKEEALRYLSSLIREGSVILV------------KGSRGMKME-DLVREI 436 >gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21] Length = 430 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 69/380 (18%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 NQ+S ++ + + + DSR+I G +F+ + G + DGH FI A GA A + Sbjct: 16 NQVS----EFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDNGAIATI--- 67 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S P L+V + K + A K +++AVTG++GK++ + Sbjct: 68 -------SEKEIEGHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTKDMIAA 120 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 I + G + +IG T+ +D I L +L G HV E Sbjct: 121 ILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-----KIILEMGQDHL---GDIHVLSE 172 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + + R+ + LI G H+++ +++ KM++ + + S I+ A Sbjct: 173 IA-----KPRIAVVTLI-------GEAHLEFFGSREKIAEGKMQITDGM---SSDGILIA 217 Query: 249 D-----DAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 D Y ++ ++ H+ +V + + K +T + Sbjct: 218 PGDPIIDPYLPANQMTIRFGHDQELQVTELKEE--------------KHSLTFKTNALEH 263 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG++ NA+VAA + + + +++ LE L + R E+ ++ G I Sbjct: 264 QLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEW-KKSANGADILS 322 Query: 361 D-YAHTSNSLEMILKNIRTI 379 D Y ++ +IL+ I Sbjct: 323 DVYNANPTAMRLILETFSAI 342 >gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 461 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 43/366 (11%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA R G ++A+TG++GK++ +++ +GL G T S A+ L Sbjct: 97 FAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223 P Y+ +E SS LD + + N+ DH+D Y Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQM 193 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKV 282 + Y AKMR+ + P + I + +D +++ ++K AG R+ + K V Sbjct: 194 ELYARAKMRITQNQEPTDY-FISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249 Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 A + Q+ +++ F+ L L G+ V NAL A+G+ ++ LE Sbjct: 250 VASSHNGQLCFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VP R E++ + I A NS L+++R T I++ G G D+ Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYN 364 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 +M + + + +T D+ K+ IP E + +AI A +M Sbjct: 365 DLMDLVKEKVVGLIYLTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418 Query: 460 DVLVVA 465 D ++++ Sbjct: 419 DTVLLS 424 >gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola batsensis HTCC2597] Length = 476 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 121/314 (38%), Gaps = 22/314 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R ++AG +FVA+ + DGH F+ QA+ +GA A +VS + ++ P+ Sbjct: 26 VSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEKGAAAALVSR------VPENVPADAPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV + + L + I+AVTG+ GK+S ++ + IG Sbjct: 79 LVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTKEMLRTV----------IGGQRR 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + + P+ LA+ + + G+ + + RL + T + Sbjct: 129 VHAAEASYNNHWGVPLTLAR-MPRDTEVGIIEIGMNHPGEIAPLARL--ARPHVAMITTV 185 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 G H++ K +F L+P A+I D + + A G +L+ G Sbjct: 186 GTAHLEAFDNIDGIAREKASIFNGLMPG-GWAVINGDLDTTPILRAAAEATGAHILTFGE 244 Query: 273 QGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 H L KV I + F G NAL + A+G+D AL Sbjct: 245 APANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVVRALGLDRAL 304 Query: 332 VLEHLEKLHVVPGR 345 L + GR Sbjct: 305 ACSDLSQWTPPAGR 318 >gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. NATL2A] Length = 465 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 99/406 (24%), Positives = 164/406 (40%), Gaps = 53/406 (13%) Query: 5 DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 D+ +KD +L L + I +S+DSR I+ G FV +VGNK D H ++ A Sbjct: 2 DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAF 61 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPEN----ILA 119 G +A VVS Y + + P VV +T L+A ++ H N ++A Sbjct: 62 DLGIQAAVVSEKY-----NGLVPIGLPHWVVPDT-----LYAYQQIALLHRRNLNLPVVA 111 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG+ GK++ ++ I G +SS +N + I + K L S Sbjct: 112 VTGSVGKTTTRELIRAILSPLG---------EIVSSRGNEN-----NDIGVPKTLLSGSE 157 Query: 180 QGVTHVSVEASSHGLDQ-HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E G Q RL + + TN+G+ HI +++ AK + L Sbjct: 158 TDAAFV-LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYL 216 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----------VCAIH 286 P I + D K ++++ RV G+ ++ + Sbjct: 217 SPDGVVIIPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQI 276 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + Q I EG+ F PL G N L+A + +G+ S L+ L K+++ GR Sbjct: 277 DMQNNFILFEGRKFK--LPLEGRHNAMNFLLALTVATELGL-SIKKLDQL-KINMPIGRN 332 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGC 390 V G + +D + + S E ++ ++ + S GR V G Sbjct: 333 RLVDC---GQYLVLDETYNA-SPESVIASLELLVSKPGRHFAVLGT 374 >gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase MurF [Chlamydia muridarum MopnTet14] Length = 450 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 87/330 (26%), Positives = 135/330 (40%), Gaps = 45/330 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-----SAYSLQDF 82 +K+ V+ DSR + G IF A+ GN+ GHLF+ QA GA A VV+ +Y LQ F Sbjct: 23 KKVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGPSYGLQLF 82 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141 V + R+ L A R G + ++ +TG+ GK++ SF QQ+ Sbjct: 83 H-----------VADPRESLRE-AGRTQGALFQGEVIGITGSVGKTTTKSFTQQL----- 125 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 LSSF S + +++LT P I +A + + + S G ++ L+ Sbjct: 126 LSSFY---KVFASPKSYNSQLTLPLSILMADG-----DEDFLLLEMGVSEPGNMKNLLEV 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSKEVMK 258 I+ G T HID + EE LL + ++ D ++ MK Sbjct: 178 IEPTIGVIT-----HIDVQHAMNFLDKGAKGIVEEKSLLLERCGLQLLPKDSSWFPFFMK 232 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + A S+ + + + AIH+ V IS D + P N LVA Sbjct: 233 KNSTAEQFSFSMNNETSDFYYR---AIHS-DGVLISAPDGDIELPVVFPYSPAYMNFLVA 288 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPG-RFE 347 L + LE + ++P RFE Sbjct: 289 VALAWLTNVPMDR-LEQVSPSLILPSMRFE 317 >gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum sp. Y04AAS1] gi|254766052|sp|B4U609|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum sp. Y04AAS1] Length = 411 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 63/298 (21%) Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165 A R Y +NI+AVTGT GKS+ + +SF + TP Sbjct: 78 AYRFY--KGKNIIAVTGTDGKSTTVHLIHHF-----------------TSFKEGGNFGTP 118 Query: 166 -SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 S I L +V++EASS LD + G F N +DH+D+H + + Sbjct: 119 FSEIVL--------DNDKENVALEASS--FQGKTLDTFRPNVGVFLNFSKDHLDWHPSLE 168 Query: 225 AYFNAKMRLF-----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 Y +K ++F E++L + + + +K++ N +V+ G ++ Sbjct: 169 DYLLSKQKIFKNQTQEDILILNAQKPVCDTPSLAKKIF-FGENGDLKVV-----GSDVYY 222 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K I N + L G +YN VA+ + ++GI + ++LE Sbjct: 223 KDELLIENISHPS-------------LKGLHNLYNIAVASFVAFSMGISLEEIKKNLETF 269 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGC---GGD 393 +P R++++G N G I D T+ N+L L++ T I+++ G GGD Sbjct: 270 EALPFRYQYLG-NFEGIDICNDSKSTTVNALMSALES----TKAPILLIAGGIDKGGD 322 >gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica ACS-049-V-Sch6] Length = 460 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 103/428 (24%), Positives = 171/428 (39%), Gaps = 73/428 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 QG +A+V S+A IR + P +V + L S + N +AV G Sbjct: 63 QGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTNGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L Q+ PT I YL K S L + Sbjct: 114 HGKTSTTSMIGQI-----LVEGQMEPTVIIGGEVD----------YL-KGSSCLGKGEYS 157 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S + R K+I TN+ DH+D+++T + NA + F E LP + Sbjct: 158 VVEADESDGSFLKLRP---KMIV--ITNIEDDHMDHYKTMENLLNAFCQ-FVETLPVDGK 211 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ D+ + VM + + ++ G Y K IH + +++ + +G Sbjct: 212 AVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHYEDSSLVYD-----VVHKG 263 Query: 298 KDFDFL-FPLPGEFQVYNAL---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + +PG V N+L + A C + + S +++ L K RFE G + Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPS--IVKALGKFIGAKRRFETKG-HV 320 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDL 409 G + DYAH ++ LK + + R+I VF + R + K A Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF----QPHRYSRTSLLKDEFATAFTS 376 Query: 410 ADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 AD +TD EDP I +E+ H ++E N + A+ + + D Sbjct: 377 ADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKV--VRPND 434 Query: 461 VLVVAGKG 468 +++ G G Sbjct: 435 LVITMGAG 442 >gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum DSM 20595] gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum DSM 20595] Length = 450 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 5/182 (2%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + +A+ A + +++P + DD + + + A G R+ + Sbjct: 174 TNVEPDHLDHYGSAEAFDQAFVDFAGKIVPG-GLLVCCTDDPGAARLAEAAQVHGVRIAT 232 Query: 270 VGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + G + V + N + + ++ + G + NA+ A +C +G Sbjct: 233 YGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRLSVHGTHMLMNAVGAWIVCCDLG 292 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 D+A L RFE G G R+ DYAH +E L+ R++T+GR+ V Sbjct: 293 FDAAESASALASFTGTGRRFELRG-EVNGVRVIDDYAHHPTEVEATLRTARSVTTGRVKV 351 Query: 387 VF 388 VF Sbjct: 352 VF 353 >gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Prevotella oralis ATCC 33269] Length = 896 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 153/367 (41%), Gaps = 33/367 (8%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 R+ I + +DSR + +F A+ ++ DG FI +G VV L D Sbjct: 92 RDANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRGVFNFVVEH---LPDNY 148 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 T+ + L V N L A R + ++ +TG++GK+ V ++ Q L Sbjct: 149 DTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKTMVKEWLYQ------LL 202 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDG 201 S Q+ T + S+ ++++ P ++L L+ + G++ AS + Sbjct: 203 SPQMVVTRSPRSY--NSQIGVPLSVWLMNELTQIGVFEAGISMPGEMASLRSI------- 253 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRA 260 I+ G T +G H + + + + K++LF +S A+IY ADD M+++ Sbjct: 254 IQPTIGVLTGIGTAHQENFASMEEKCSEKLKLFH-----DSEAVIYNADDDLIARCMEQS 308 Query: 261 HNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G R+ S + + +K + N VT GK+ + P V N++ Sbjct: 309 GYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVVNSITCM 368 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NI 376 + + +G+ + + +++L V R E V T G + D Y SL++ L N Sbjct: 369 AVSLYLGLSADDLDRRMQRLEPVAMRLE-VKTGQHGCTLINDSYNSDVKSLDIALDFMNR 427 Query: 377 RTITSGR 383 R GR Sbjct: 428 RPDHKGR 434 >gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102] gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Synechococcus sp. WH 8102] Length = 449 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 132/320 (41%), Gaps = 57/320 (17%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ + + +DSR ++AG FV +VG + DGH F+ Q A G + VVS D++A + Sbjct: 23 DQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVS-----LDWTAPL 77 Query: 87 RSNTPILVVDNT---RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 S VD+T + L+L R G ++AVTG++GK++ ++ + Sbjct: 78 PSGLLHWRVDDTLAAYQQLALLHRRQLGLP---LVAVTGSAGKTTTRELIRAV------- 127 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS--VEASSHGLDQ-HRLD 200 + P I + +N P+ + A G H + +E G + RL Sbjct: 128 ---LAPLGAIQASDGNNNNDIGVPLTVLGA-------GSDHAALVIEMGMRGPGEIARLS 177 Query: 201 -GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 + TN+G HI +++A AK + L P + +I A D ++ Sbjct: 178 RCTEPDVAVITNIGTAHIGRLGSREAIATAKCEITAALHP-QGVVVIPAGDPLLEQ---- 232 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---------DFDFLFPLPGEF 310 L+ +QG+ + ++ + + +T + G + PL G Sbjct: 233 -------ALAAVWQGRVLRVR----LEDDPDITADLIGAARNDRLLLDEASIPLPLDGRH 281 Query: 311 QVYNALVAAGLCIAIGIDSA 330 N L+A + +G+D A Sbjct: 282 NARNLLLALAVGSHLGVDPA 301 >gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia africae ESF-5] Length = 449 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258 TN+ H+++ + + AK +F K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKKL 233 Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 R+ ++ G+ ++LK + K D + P +P Sbjct: 234 SITDIHSFGRSAKTSAELILYENLGEQVYLK------------YKINKKVLDVMIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y ++ L I I G D + HL + GR E + N + R+ DY + S Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 457 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + RI+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 360 >gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens str. 13] Length = 466 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 63 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 122 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 123 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 176 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 177 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 216 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 272 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 273 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 332 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + RI+ VF Sbjct: 333 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 369 >gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phenylobacterium zucineum HLK1] Length = 465 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 43/372 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + VS D+R IQ G +FVA+ G + DGH F+ QA +GA ++ S Q F Sbjct: 25 RAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFEKGAAGVIASR----QVFG----- 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P ++V +T L + + P+ AVTG+ GK+SV + +GL+ Sbjct: 75 --PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTSVTQAIM-----AGLT--LA 125 Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 GP S++ S+ +N + P+ LA+ + +++ V + + + R+ ++ A Sbjct: 126 GPAHSSVKSY--NNHIGV--PLTLAR-MPRGTARAVFEIGMNHADEIRPLSRM--VRPHA 178 Query: 207 GSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G H + + + AK +FE L P A++ AD+ + + A AG Sbjct: 179 VVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPG-GVAVLNADNRWFDLLKGEAERAGA 237 Query: 266 RVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V + G + I +V A H Q + GK DF G N++ + Sbjct: 238 TVRTFGTGEACDARLIDF-QVPAGHAVVQARL--HGKALDFPILQTGLHWGLNSMAVLLM 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379 A+G+D L L + GR E G +D ++ +N + M I T+ Sbjct: 295 LEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMA-SAIATLG 353 Query: 380 ---TSGRIIVVF 388 T+GR IV Sbjct: 354 ARETAGRRIVAL 365 >gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58] gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58] Length = 475 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/286 (22%), Positives = 114/286 (39%), Gaps = 40/286 (13%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S + + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMIAALLDAGGVDPTVIN-GGIINSYGSNARLGNSDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + F+ F Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGS----FDRVKDAF 202 Query: 235 EELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQ 290 E + P A++ D + ++ R + R+++ G+ + I + V + Sbjct: 203 VEFVGNVPFYGAALLCLDHPEVQAILPRVQDR--RIVTYGFSAQADIRGENVRPVPGGNL 260 Query: 291 VTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + + +D D L P+PG V N+L A G+ + +GI ++ EK V Sbjct: 261 FDVLIRDRDGHVEKISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKR 320 Query: 345 RFEFVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 RF VG GG V DY H + +L R GR++ + Sbjct: 321 RFTKVGEVQLEGGVATVIDDYGHHPVEIRAVLAAAREGALGRVVAI 366 >gi|15789660|ref|NP_279484.1| hypothetical protein VNG0412G [Halobacterium sp. NRC-1] gi|169235374|ref|YP_001688574.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase / dihydropteroate synthase [Halobacterium salinarum R1] gi|10580024|gb|AAG18964.1| dihydropteroate synthase [Halobacterium sp. NRC-1] gi|167726440|emb|CAP13225.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase / dihydropteroate synthase [Halobacterium salinarum R1] Length = 815 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/393 (21%), Positives = 144/393 (36%), Gaps = 63/393 (16%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGP------------------------T 150 + + + G++GK S A F + I + +GL P Sbjct: 41 DYVQIAGSNGKGSTARFTESILRAAGLDVGLYTSPHFDDVRERVTVNGRRMSKAALTTFI 100 Query: 151 STISSFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 TI+ + + +P Y A AL S V +E G RLD ++ Sbjct: 101 ETITPYVTERAADGAAPTYFEVVTAMALWQFSRADVDVAVLEVGIGG----RLDATSVVD 156 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA--DDAYSK-----EVMKR 259 S + + +++ R + P ++ A DDA + ++ Sbjct: 157 PSASAVTSVTLEHTDVLGETIPEIARDKAHVAPAGDTPLVTATTDDALAAVRDHAGAVRT 216 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALV 317 + R ++ Y+G+ N + +S+ G D+ PL G+ Q NA V Sbjct: 217 VGDTAGRDVTATYEGRT----------NHTEAAVSITGDDWSVATEIPLLGDHQAENAGV 266 Query: 318 AAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 AA L G+D + L H PGRFE +G + + +D AH + + + + Sbjct: 267 AAALARQTAGVDDDAIARGLRSAH-WPGRFEVMGADP---VVVLDGAHNPGACGAVAETV 322 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435 R++ VFG D+D G AL D + P R+ED + + A Sbjct: 323 AEFDYDRLLTVFGAMHDKDHGAM----AAALPTPDHVWACEPVPDRAEDADVLAAVFEDA 378 Query: 436 IPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGK 467 G + +E A+ AI D+++VAG Sbjct: 379 GAGTVSVTRAVESAVADAIAEATADDLVLVAGS 411 >gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN] gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae Br4923] gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae] gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923] Length = 495 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 24/199 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPK---ESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D++ + AY +R+F+ + + ++ DD + + +R G R Sbjct: 189 TNIDSDHLDFYGSVDAY----IRVFDSFVERFALGGALVVCNDDPGAAALARRTAELGIR 244 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFL--FPLPGEFQVYNALVAA 319 VL G + + +QQ T I + G+ + P+PG NAL A Sbjct: 245 VLRYGSDDRIGETLAARLLSWEQQGTGAVAHIQLAGQPNSRVMRLPVPGRHMALNALGAL 304 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------RIYVDYAHTSNSLEMIL 373 I IG + VL+ L V RFE VGT+ G R++ DYAH + L Sbjct: 305 LAAIEIGASTDEVLDGLAGFRGVRRRFELVGTSGVGQASNSLVRVFDDYAHHPTEISATL 364 Query: 374 KNIRTIT----SGRIIVVF 388 R + GR IVVF Sbjct: 365 AAFRIMLEQSGGGRCIVVF 383 >gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 492 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 147/368 (39%), Gaps = 79/368 (21%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+++ V+ DSR ++FV I G + DGH FIPQ + QG A+ S + L D Sbjct: 26 REVSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQG--ALCTLSEHPLSD------ 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRS 140 ++P ++V + + L A ++ ++G+ GK+S +AS ++Q + + + Sbjct: 78 -SSPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTA 136 Query: 141 G---------LSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 G L+ FQI IS F + NRL + + L++ G H Sbjct: 137 GNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIAQ----PDICVLTNIGQCH 192 Query: 185 VSVEASSHGLDQ-------HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232 + G+ + HR G +I N D + T A +K + Sbjct: 193 LENLGDRDGVRKAKTEMFAHRRSGASII----LNGDDDKLSEIATVHAASFSKQDGTTVV 248 Query: 233 LFEELLPKESPAIIYADDAYSKEVM---KRAHNA--GCRVLSVGYQGKFIHLKKVCAIHN 287 + + E+ A D + + K HNA + S+G +G C IH Sbjct: 249 PYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKG------TSCKIHT 302 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH----LEKLHVVP 343 DF + +PG VYNAL IA+GI+ L L+ +E L V Sbjct: 303 P--------AGDFTVIISIPGAHMVYNALAG----IAVGIELGLTLDEIKTGIEALQPVA 350 Query: 344 GRFEFVGT 351 GR + T Sbjct: 351 GRNHMIET 358 >gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 480 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 23/193 (11%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+ DH+DY + F +LP + I Y D S +V+ + C+ Sbjct: 186 GVITNIEEDHLDYFKGGLKQIKHSFHDFGSILPPDGLMIAYGD---SDDVLDVVSDLACQ 242 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----------DFLFPLPGEFQVYNA 315 V++ G K + + +T + EG F F +PG+ V NA Sbjct: 243 VITYGLSDKNEWVAR--------NITYNDEGNPFFDAYHNGTLYGRFALRIPGQHNVLNA 294 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + + I V E L+ RFEF G G +Y DYAH L++++ Sbjct: 295 MACIACADYLNIQKETVEEALDHFGGAKRRFEFRGAVG-GINVYEDYAHHPTELKVVIDA 353 Query: 376 IRTITSGRIIVVF 388 ++ VV+ Sbjct: 354 CLNHAHNKLWVVY 366 >gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. novicida GA99-3549] gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3549] Length = 451 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 44/368 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L+ +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLNPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD I+ P E+I +I+ G+ G++ AI ++ N+ V++ Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVIL 435 Query: 464 VAGKGHET 471 + G G T Sbjct: 436 IQGAGDVT 443 >gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia floridanus] gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia floridanus] Length = 480 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 134/341 (39%), Gaps = 52/341 (15%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 I Q +V+SSA + + I V+ K LS YG +A+ GT Sbjct: 76 INQEINIVVISSAIDINNPEVQQAKRLKIPVIHRV-KILSELMRYKYG------IAIAGT 128 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ S + I +GL P ++ + + SQGV+ Sbjct: 129 HGKTTTVSMLTNIYVEAGLD-----------------------PTFVNGGI--IRSQGVS 163 Query: 184 HV-----SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 A S D+ L ++A TN+ DH++ + Y F + L Sbjct: 164 ARLGYGNDFIAESDESDKSFLRLCPVVA-VITNIDTDHMNTYHQNFEYLQEVFIKFLDKL 222 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG 297 P A++ DD ++++ R + ++++ G+ + + + K K TI ++ Sbjct: 223 PMYGYAVVCIDDPVVRKILPRINR---KIITYGFSKDATLCIVKYYQYREKSNFTILIKN 279 Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----- 351 K+ + PG NA + + I GI ++L+ + RFEF+G Sbjct: 280 NKELQVVLNTPGYHNALNAAASIAVAIEEGIRDTVILKSMSNFTGTNRRFEFLGNYPLNI 339 Query: 352 -NSRGGRIYV--DYAHTSNSLEMILKNIRTITSG-RIIVVF 388 N R G++ V DY H L + IRT S R+++VF Sbjct: 340 INGRVGKVMVIDDYGHHPAELRSTIIAIRTGWSDHRLVMVF 380 >gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] gi|27887168|gb|EAA24272.1| Histidinol-phosphatase; UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine-- D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13] Length = 611 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 54/379 (14%) Query: 2 KLQDLIY---KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53 K + LIY KDF E++ N+L IF ++ +I V DSR + G +F AI Sbjct: 168 KNETLIYENLKDFSEILKRGKLNEL-IFEEFSKKVQIKNVVMDSRKVIEGSLFFAI---- 222 Query: 54 EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113 +G+ ++ + +G ++V++ ++D ++ V +T + A++ K Sbjct: 223 NNGNSYVKDVLDKGT-SLVIADNTDIKD--------KRVIKVTDTIATMQDLATKYRNKL 273 Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++ +TG++GK++ V L S + T ++ +N + P + Sbjct: 274 DIQVVGITGSNGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL----- 320 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMR 232 L+ + + + SS G + RL I + TN+G HI++ +T+ F AK Sbjct: 321 LNVTDEEKFVVLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTE 379 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 L E + KE+ + DD Y V VG+ + + NK Sbjct: 380 LL-EFVDKEN-TFVCGDDEYL---------GKLDVNKVGFNENNTYKIESYEFSNKGSKF 428 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I ++GK+++ L G+ + N +A L IG+ + + L+++ + RF+ + Sbjct: 429 I-LDGKEYE--MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI- 484 Query: 353 SRGGRIYVDYAHTSNSLEM 371 G IY++ A+ ++ + M Sbjct: 485 --GNDIYINDAYNASPMSM 501 >gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica ACS-134-V-Col7a] gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica ACS-134-V-Col7a] Length = 460 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 102/428 (23%), Positives = 170/428 (39%), Gaps = 73/428 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 QG +A+V S+A IR + P +V + L S + N +AV G Sbjct: 63 QGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTNGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L Q+ PT I YL K S L + Sbjct: 114 HGKTSTTSMIGQI-----LVEGQMEPTVIIGGEVD----------YL-KGSSCLGKGEYS 157 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S + R I + TN+ DH+D+++T + NA + F E LP + Sbjct: 158 VVEADESDGSFLKLRPKTIVI-----TNIEDDHMDHYKTMENLLNAFCQ-FVETLPVDGK 211 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297 A++ D+ + VM + + ++ G Y K IH + +++ + +G Sbjct: 212 AVVCGDNDNIRYVMSKVER---QFITYGLEDSNDYVAKNIHYEDSSLVYD-----VVHKG 263 Query: 298 KDFDFL-FPLPGEFQVYNAL---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + + +PG V N+L + A C + + S +++ L K RFE G + Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPS--IVKALGKFIGAKRRFETKG-HV 320 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDL 409 G + DYAH ++ LK + + R+I VF + R + K A Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF----QPHRYSRTSLLKDEFATAFTS 376 Query: 410 ADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 AD +TD EDP I +E+ H ++E N + A+ + + D Sbjct: 377 ADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKV--VRPND 434 Query: 461 VLVVAGKG 468 +++ G G Sbjct: 435 LVITMGAG 442 >gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans P7] gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans P7] gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans P7] gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans P7] Length = 458 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 115/296 (38%), Gaps = 49/296 (16%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNR 161 F L H N+ A+ GT GK++ S V I + L PT + N Sbjct: 103 FLGHLMKGHKFNV-AIAGTHGKTTTTSMVSHIFLNANLD-----PTILVGGQLDAINGNV 156 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 T S +L +A Y S L I G N+ DH+D+++ Sbjct: 157 RTGNSEYFLTEACEYKGS------------------FLKFFPYI-GVILNIDADHLDFYK 197 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK- 280 NA ++ F +L+PK I Y +D +V+ + C VL+ G + K Sbjct: 198 DIDDIQNAFIK-FAKLIPKNGYLICYGEDPRMGKVISECN---CNVLTYGLTNGNVVAKN 253 Query: 281 -----KVCA---IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 K CA ++ ++ SV+ +PG+ + NAL + + +++ I + L+ Sbjct: 254 MKFDEKGCASFDVYAANEMITSVK-------LNVPGKHNILNALASICVSLSLDIPTNLI 306 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + LE RFE G G + DYAH ++ L + +I VF Sbjct: 307 SKGLESFKGTHRRFEIKGV-KNGITVVDDYAHHPTEIKATLSAAKNYPHNKIFCVF 361 >gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia rickettsii] gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia rickettsii str. Iowa] Length = 449 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------QGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258 TN+ H+++ + + AK +F K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233 Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 R+ ++ G+ ++LK + K D P +P Sbjct: 234 SITDIHSFGRSAKTSAELMLYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y ++ L I I G D + HL + GR E + N + R+ DY + S Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax paradoxus EPS] gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax paradoxus EPS] Length = 735 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 24/122 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 +LAVTGT+GK++V + Q+ +R+G S + IGPT L Sbjct: 345 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPT------------------LLDTL 386 Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +++ ++ + V V E SS LD + G + A + NL +DH+D+H AY AK R Sbjct: 387 AAHIDAETLPDVWVLELSSFQLDG--VQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKAR 444 Query: 233 LF 234 +F Sbjct: 445 IF 446 >gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010] gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010] Length = 826 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 34/356 (9%) Query: 27 ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 E I+ + +DSR + +F A+ + DG+ +IP+ ++G VV + D Sbjct: 21 ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIPELYSRGVRNFVVEAIPENWDM-- 78 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + L V T + L A+ + ++ +TG++GK+ V ++ Q+ LS Sbjct: 79 -LYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTVVKEWLYQL-----LSP 132 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++ T S + ++++ P ++L L+ + GV + S G + + I+ Sbjct: 133 NKV---VTRSPRSYNSQIGVPLSVWL---LNEQTEVGVFEAGI--SERGEMKALREIIQP 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADDAYSKEVMKRAHNA 263 G FT+LG H Q+ + + + + E+L L +++ AI+Y D + V++ Sbjct: 185 TIGVFTSLGEAH------QENFASLEEKCMEKLCLFRDTNAIVYPLD--EELVVRCIKTL 236 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVA 318 + +G+ K + K ++T ++ +GK+ + P + V N++ + Sbjct: 237 NYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSITS 296 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 A +C+ +G++ + E + +L V R E V G + D Y NSL++ L Sbjct: 297 AIICLHLGVEVKTLAERMPQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIAL 351 >gi|326390379|ref|ZP_08211938.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325993656|gb|EGD52089.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 876 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID +T + A+ A Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288 L E + ++ +++ ADD + + +RA G + Y H++K A++ K Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651 Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769 Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448 +G+I D V +D + R P ++ + G I G I++ EA Sbjct: 770 SSILKVGEICGQGFDFIYVKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829 Query: 449 IRTAIEMLNKQDVLVV 464 +R A+ D++VV Sbjct: 830 LRAAMYNAEGGDLIVV 845 >gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces flavogriseus ATCC 33331] Length = 493 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 26/166 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +GL + +G Sbjct: 124 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 170 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L + ++VE SS+ L H ++ +G+ NL DH+D+H + Sbjct: 171 ---VSLLDAV--LGDETYDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMA 223 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268 Y K R++E S A +Y A DA ++++++ A GCR + Sbjct: 224 GYAADKGRIYE----GNSVACVYNAQDAATEDLVREADVEEGCRAI 265 >gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 454 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-- 268 N+ DH++ H+T + Y N K R+FE E + Y D K + A C+V Sbjct: 184 NITPDHLNRHKTLENYINIKGRIFENQSFNEYTVLNYDD----KNISSLFDRAKCKVFPF 239 Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + Y+G ++ K+ N ++ TI D + ++ +PG V NA+VA+ + Sbjct: 240 SMEKILYRGTYVENGKIVISSNGEKNTII----DINDIY-IPGNHNVENAMVASTMAFLA 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFV 349 GID ++ L+ V R EFV Sbjct: 295 GIDVNIINTTLKTFKGVEHRIEFV 318 >gi|13471551|ref|NP_103117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium loti MAFF303099] gi|30316110|sp|Q98KB1|MURD_RHILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|14022293|dbj|BAB48903.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Mesorhizobium loti MAFF303099] Length = 466 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 40/242 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT+GKS+ + I + +G + Q+G + D P P Sbjct: 116 FIAITGTNGKSTTTALTAHILKSAGRDT-QMGGNIGRAVMTLD----PPKPD-------- 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 H VE SS+ +D I AG NL DH+D H T Q Y + K E Sbjct: 163 ------RHFVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYASIK----ER 210 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288 L+ AII DD++ ++ +R AG +V+ + GY +L + A+H + Sbjct: 211 LVAGSETAIIGIDDSWCAQIAERLERAGQQVIRISKRLPLTDGYFADGTNLME--AVHGR 268 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +EG + L G+ NAL A C+ +G+D + LE + R E Sbjct: 269 YSKVAFLEG-----IGSLRGQHNAQNALAAVAACLKVGLDLGEIQSGLESFPGLAHRMEQ 323 Query: 349 VG 350 VG Sbjct: 324 VG 325 >gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 305] Length = 468 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 89/373 (23%), Positives = 151/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + V S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium tepidum TLS] Length = 476 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 36/367 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR G +FVA+ G + DGH F+ + A GA VVS + ++ + + LV Sbjct: 37 DSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRFLVA 96 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ K A+ + ++ + G++GK++ + + +SF + ++ Sbjct: 97 DDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLS----TSFNV----LVTQ 148 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSFTNL 212 +N L P L+ L + T V+V +H + L + K G TN+ Sbjct: 149 GNYNNHLGVP--------LTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNI 200 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAGCRVLS 269 G +H+++ + +A+ LF L A + DD A + + R G + + Sbjct: 201 GHEHLEFFGSLDGVADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGA 260 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G+ +++ A + T+ E G G V NA+ A+ + G+ Sbjct: 261 ----GRAWWAEQIGADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGL 316 Query: 328 DSALVLEHLEKLHVVPG--RFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TSG 382 A + E L L G R E GG + ++ + +N S+ + L + I G Sbjct: 317 APAHIAEGLGTLLPAKGWKRMELF---EDGGIVVLNDTYNANPDSVRLALDTLAAIECRG 373 Query: 383 RIIVVFG 389 R I V G Sbjct: 374 RRIAVLG 380 >gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353] Length = 490 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 125/336 (37%), Gaps = 67/336 (19%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I E S DSR IFV I+G + D H FI A+ L+ F N Sbjct: 49 IKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKINGATFTSEHDEPLEGF-----EN 103 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P + V +T + + + + ++AVTG+ GK++ + +++ Q G Sbjct: 104 KPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTREMISTVLASQKKVFQTIGN 163 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + QIG T+S +++ + + + S G + + I Sbjct: 164 QNSQIGVPLTLSHLTREDEIAV--------------------LEIGMSERGQIEKLTNMI 203 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + T +G HI +TQ+ KM + + LP++ + DD + Sbjct: 204 RPNVAVVTMIGVSHIAQLKTQENICLEKMDIVKG-LPEDGMVFLNGDDKF---------- 252 Query: 263 AGCRVLSVGYQGKFIH------LKKVC-----AIHNKQQVTI----SVEG---KDFDFLF 304 Y+GK H + K C +H K TI EG KD + + Sbjct: 253 ------LAPYRGKLSHKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDMEVVL 306 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 GE V NALVA G+ +G+D + L H Sbjct: 307 GTMGEHNVRNALVALGVAHQMGLDMKAAAKALVTFH 342 >gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 466 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 25/292 (8%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +FV ++GN+ DGH FI AI++GA +V + + + + + + V NT L Sbjct: 45 LFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNTLTALGK 102 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 AS + ++AVTG+SGK++ + + S+ ++ +N + Sbjct: 103 LASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESAL------VVTEKNYNNEIGL 156 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQ 223 P ++ +S Q V +H + RL I K T +G HI++ ++Q Sbjct: 157 PFTLF------KISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQ 210 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + AK + E L K+ + Y + YSK + + G +++ +K+ Sbjct: 211 KNIAKAKGEIVEGL--KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LTKSEKI 261 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 +I K+ +E K+ + LPGE + N VA AIG + E Sbjct: 262 FSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQE 313 >gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella benthica KT99] Length = 455 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 123/314 (39%), Gaps = 23/314 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VSSDSR I +FVA+ G K DGH F A+ GA A++V L N Sbjct: 27 VSSDSRVIPEHTLFVALKGEKFDGHDFANMAVENGATALLVDHELPL---------NIAQ 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L+V +T+K + + L +A+TG++GK+SV V I + + G Sbjct: 78 LIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKTSVKEMVATILSQRHKVLYTAG---- 133 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 +F +N + P + +A GV + A+ G + +K N+ Sbjct: 134 --NF--NNEIGVPLTLLRLEADDEF---GVFELG--ANHQGEIDYTSSLVKPDVALVNNV 184 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + AK +F L A+I ADD ++ ++ + + V Sbjct: 185 ASAHLEGFGSLAGVACAKSEIFNHL-AATGTAVINADDQFASVMLSASMSFTQLTFGVES 243 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 + + +S + PL G QV NAL A +C++ G+ + Sbjct: 244 EADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAATAICLSFGLTLDEI 303 Query: 333 LEHLEKLHVVPGRF 346 L L V GR Sbjct: 304 KLGLSLLLPVKGRM 317 >gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL072PA2] gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL072PA1] Length = 471 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESIGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas auensis DSM 9187] Length = 459 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 141/333 (42%), Gaps = 50/333 (15%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + ++ +S+D+R + AG +F+A+ G + D H F+ QA+A+GA A VVS L D S Sbjct: 25 QTVSHISTDTRTVAAGALFLALQGERFDAHQFVAQAVAKGAVAAVVS--RPLADVS---- 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140 P ++V +TR L A+ + + I+A+TG+ GK+++ I Q++ Sbjct: 79 --IPQILVADTRIALGQIAAWVRAQLDLQIVAITGSCGKTTLKEMCAAILQQAAPVLATQ 136 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + +IG T+ D+R Y L G H A + L Sbjct: 137 GNLNNEIGVPQTLLRLTPDDR-------YAVVEL------GANHPGEIAWTTSL------ 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---YSKEVM 257 +K N+ H+ + + AK +F L A+I AD + +E++ Sbjct: 178 -VKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSG-LSDSGTAVINADSEFYDWWREIL 235 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQVY 313 R S G + + ++Q + IS G+ D P+PG V Sbjct: 236 S------VRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQ-IDIQLPIPGLHNVS 288 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA + ++G+ V L + V GRF Sbjct: 289 NALAAAAVTTSLGLSLVQVQSGLANMLPVKGRF 321 >gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus fermentum ATCC 14931] Length = 194 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + ++ V+ DSR+++AG +FV + G ++DGH ++ +A GA+A + + +D Sbjct: 20 QWGDIEVRSVAFDSRNLEAGGLFVPLKG-EQDGHQYVAKAFENGAKATLWA-----KDHP 73 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 P LVVD+ + L K ++AVTG++GK++ V I Sbjct: 74 YDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTKDMVASIL 127 >gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str. 13] Length = 435 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 32 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 91 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 92 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 145 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 146 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 185 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 186 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 241 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 242 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKG 301 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + RI+ VF Sbjct: 302 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVF 338 >gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum anthropi ATCC 49188] gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum anthropi ATCC 49188] Length = 467 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 52/281 (18%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + SG Q+G + LT P Sbjct: 117 IAITGTNGKSTTTALIAHIIKASG-RDMQLGGNIGTAI------LTLEPP---------- 159 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 Q VE SS+ +D + AG NL DH+D H + + Y K E L Sbjct: 160 --QANRFYVVECSSYQID--LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVT 292 + AI+ DD Y + + R + G V+ + + G F K+ + + Sbjct: 212 VAASDTAIVGVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQDGEIDE 271 Query: 293 I-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-LHVVPG---RFE 347 I S+EG + L G NAL A C+++G L LE ++ L PG R E Sbjct: 272 IASLEG-----IGSLRGAHNAQNALAAVVACLSVG----LSLEEIDAGLKSFPGLAHRME 322 Query: 348 FVGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 VG RG ++V+ + +N +L L+NI I G Sbjct: 323 QVG--HRGKVLFVNDSKATNAEATAPALSSFLQNIYWIAGG 361 >gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 474 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS D+R +Q G +FVA+ + DGH F+ A+A+GA A +VS +R+ Sbjct: 23 VSGVSIDTRTLQPGDLFVALA-DVRDGHDFVKDALAKGAGAAMVSR------IPEGVRTT 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P+LVV++ L + + ++A+TG+ GK+S + I R Sbjct: 76 DPLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDR 125 >gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii NCIMB 8052] gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii NCIMB 8052] Length = 459 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 8/185 (4%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G N+ DH+DY++ + ++ F L+P++ + YADD E++ + C Sbjct: 182 GIILNIDSDHLDYYKDIDEIADTFLQ-FSRLIPEDGYLVGYADDQRVNEILSETN---CN 237 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKD-FDFLFPLPGEFQVYNALVAAGLCI 323 LS G+ K + T V +G + F+ +PG+ + NAL + + + Sbjct: 238 TLSYGFSDNANLTAKNIHFNTNGCATFDVYKDGNNLFNITLNVPGKHNILNALASICVSL 297 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 I + ++E L RFE+ G G + DYAH ++ L + + + Sbjct: 298 IFNISNDCIIEGLSNCKGAHKRFEYKGK-LNGVTVIDDYAHHPTEIKATLSTAKQMNHNK 356 Query: 384 IIVVF 388 +F Sbjct: 357 TYCIF 361 >gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31] Length = 609 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 55/371 (14%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 174 KDFSEVLKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++ + T ++ I+ V +T + A++ K ++ +TG+ Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + + + G +N + P + L+ + Sbjct: 280 NGKTSTKDIVYSLLSKKAKTLKTEGN--------YNNHIGLPYTL-----LNVTDEEKFV 326 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + KE+ Sbjct: 327 VLEMGMSSLG-EIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 384 Query: 243 PAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + DD Y +V K N + Y+ + + +++GK++ Sbjct: 385 -TFVCGDDVYLAKLDVNKIGFNEDNNFIIESYE------------FSDKGSKFTLDGKEY 431 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G+ + N +A L IG+ + E L+ + + RF+ + G IY+ Sbjct: 432 E--MSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV---GEDIYI 486 Query: 361 DYAHTSNSLEM 371 + A+ ++ M Sbjct: 487 NDAYNASPTSM 497 >gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. BO1] Length = 481 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 I + GR I V G Sbjct: 369 IPEGSRGRRIAVLG 382 >gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri DSM 4166] Length = 458 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%) Query: 21 FPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 P+ R + + VS+DSR IQ G +F+A+ G + DGH ++ + A+GA A +V+ Sbjct: 12 LPLSGRLVGADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVARE 71 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQ 134 + P LVV +TR L + R K P + A+TG+SGK+SV + Sbjct: 72 VE--------GAPLPQLVVADTRLALGRLGALNREAFKGP--VAAITGSSGKTSVKEMLA 121 Query: 135 QICQRS 140 I + + Sbjct: 122 SILRSA 127 >gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS] gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS] Length = 851 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 34/310 (10%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P L V + R L+ A +P I+AVTG++GK+S + ++ + Q G+ PT Sbjct: 57 PRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQVFGVPKR---PT 113 Query: 151 STISSFAQDN----RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 ++F N LT + + A S+LS +G +V ++ Sbjct: 114 KNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGGPRPNV--------------LRPEV 159 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 T++G H++Y + Q K +F+ L A+I D +++RA AG Sbjct: 160 AMITSIGEAHLEYFGSPQGVAEVKSNVFD--LMSRGTAVIPRDADTYDYMVQRARAAGAT 217 Query: 267 VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 +S G + HL A V + G+ + G N++ A G+ A+ Sbjct: 218 TVSFGAHPSADAHLLSYSAADG--VVEAEIFGERITYELGALGRHFARNSVGALGVVAAL 275 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN------SLEMILKNIRT 378 G+D L V GR S GR +D A+ +N ++EM+ + T Sbjct: 276 GLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERA-T 334 Query: 379 ITSGRIIVVF 388 GR I V Sbjct: 335 PPRGRRIAVL 344 >gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus VF5] gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus VF5] Length = 415 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 111/278 (39%), Gaps = 42/278 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TGT GKS+ I ++ F+ G I + L P I + + S+ Sbjct: 86 VIAITGTDGKSTTTRLTYLILKKFFDEVFEAG---NIGKPFSEVVLENPEGIAVLEVSSF 142 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 QG T L + G+F + DH+D+H + + Y +K R+FE Sbjct: 143 ---QGKT---------------LKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFEN 184 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 E +I D Y E+ K A + S Y K + N + + I Sbjct: 185 --QTEEDFLILNDLVY--EIKKTPSRARKVLFSELYINSDSVFYKDIRLFNPKNLKIR-- 238 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 G VYNA VA+ + + +G+ E + + +P R EF+G N G Sbjct: 239 -----------GLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLPHRLEFLG-NFNGV 286 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 +Y D S + ++ ++T +I++ G G D+ Sbjct: 287 EVYND--SKSTTPHALMHALKTFPDNSVILIVG-GKDK 321 >gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp. MZ1T] Length = 470 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 4/112 (3%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + + V +D+R + G +FVA+ G + DGH F+ A GA A +V +A+S A + Sbjct: 21 EGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKAGAAAAMVDAAWSAGKADAGL 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 P+LVVD+TR+ L A+ + ++ VTG++GK++V I + Sbjct: 81 ----PLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVKEMCAAILR 128 >gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira thiodismutans ASO3-1] gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira thiodismutans ASO3-1] Length = 433 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 32/177 (18%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 QGA+ +VVS SL A +R P V + + S F S E ++AVTGT+ Sbjct: 73 QGADLVVVSPGISL----AMVRGLCPAGQTVISELELASWFIS-------EPVIAVTGTN 121 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ +Q++ +++G F G T S D+ L+ L +S QG + Sbjct: 122 GKTTTCMLIQKVLEKAGRRVFTGGNIGTPLS---DHVLSGKRADILVLEVSSFQLQGCS- 177 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 G H G N +H+D+H+++ YF AKM+LF P + Sbjct: 178 --------GFTPH--------VGVLLNFSANHLDHHESEDEYFRAKMQLFARQGPMD 218 >gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] Length = 353 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 26/263 (9%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + +S DSR + +F A + +L Sbjct: 9 DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFAKGAAFKKEYLL--S 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120 AI QG V Y + + P+++V++ +K +SL A YG E + LA Sbjct: 66 AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178 TGT GK++ F I + + +T+ +F + + LTTP I L ++ Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFK-SALTTPESIDLFDMMNQAV 175 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236 TH+ +E SS HR+ G+ G F N+ DHI H + + YF K Sbjct: 176 QNDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHK-----R 230 Query: 237 LLPKESPAIIYADDAYSKEVMKR 259 LL + S A+I D V+K Sbjct: 231 LLMENSRAVIINSDMDHFSVLKE 253 >gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas stutzeri A1501] Length = 458 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 16/126 (12%) Query: 21 FPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76 P+ R + + VS+DSR IQ G +F+A+ G + DGH ++ + A+GA A +V+ Sbjct: 12 LPLSGRLVGADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEVAAKGAVAALVARE 71 Query: 77 YSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQ 134 + P LVV +TR L + R K P + A+TG+SGK+SV + Sbjct: 72 VE--------GAPLPQLVVADTRLALGRLGALNREAFKGP--VAAITGSSGKTSVKEMLA 121 Query: 135 QICQRS 140 I + + Sbjct: 122 SILRSA 127 >gi|12655906|gb|AAK00649.1|AF227236_1 FolC-FolP fusion protein [Halobacterium salinarum] Length = 816 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 13/185 (7%) Query: 287 NKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVP 343 N + +S+ G D+ PL G+ Q NA VAA L G+D + L H P Sbjct: 234 NHTEAAVSITGDDWSVATEIPLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAH-WP 292 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403 GRFE +G + + +D AH + + + + R++ VFG D+D G Sbjct: 293 GRFEVMGADP---VVVLDGAHNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM---- 345 Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDV 461 AL D + P R+ED + + A G + +E A+ AI D+ Sbjct: 346 AAALPTPDHVWACEPVPDRAEDADVLAAVFEDAGAGTVSVTRAVESAVADAIAEATADDL 405 Query: 462 LVVAG 466 ++VAG Sbjct: 406 VLVAG 410 >gi|89895933|ref|YP_519420.1| hypothetical protein DSY3187 [Desulfitobacterium hafniense Y51] gi|89335381|dbj|BAE84976.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 439 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 33/310 (10%) Query: 171 AKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFN 228 A AL Y + Q V V +E G +D + +K + TN+G DH+DY +T + Sbjct: 130 AMALMYFADQKVDLVLLEVGLGGAIDSTNV--VKPLISVITNVGMDHMDYLGETYEEIAG 187 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCA 284 K + K + A D EV+ K+A + VG ++ ++ Sbjct: 188 VKAGII-----KAGAITVTAAD--RPEVLNVIRKKAQEMNSPLWVVGDDVRW-EIRWSGE 239 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH---LEKLH- 340 + + + + G L GE QV NA A +C + + + LE E L Sbjct: 240 LEQEFDLA-GLRGAYNKLRLRLVGEHQVVNAATAVTVCELLKFEYGMNLERRNIYEGLRK 298 Query: 341 -VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 V PGR E + + + +D AH + + K + R+++ G GD+++ K Sbjct: 299 AVWPGRLELLSLKPK---VLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLGDKEREK- 354 Query: 400 PIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEML 456 + I + LAD I+T N PRS + E + E++ G P + R+ A+ A L Sbjct: 355 --VVDILVPLADEVIITKPNSPRSGNWEYLH-ELVKEKGKPVLTIEEPRL-AVEEAFRRL 410 Query: 457 NKQDVLVVAG 466 +K+D+L V G Sbjct: 411 DKEDMLCVTG 420 >gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA2] Length = 485 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E I+A+TG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces viridochromogenes DSM 40736] Length = 471 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 42/237 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA G + DGH F + GA A++ T P Sbjct: 31 VVRDSREAGPGSLFVAFAGERVDGHDFAAAVVGAGAVAVL-----------GTRPVGVPA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF------- 145 +VVD+ + L A + + ++A+TG++GK+S + Q+ QR + F Sbjct: 80 IVVDDVQTALGALARHVVRRLGATLVALTGSAGKTSTKDLIAQVLQRKAPTVFTPGSLNN 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG T S ++ R + + ++G+ H+ A GL ++ Sbjct: 140 EIGLPLTALSATEETRFL----------VLEMGARGIGHIRYLA---GLTPPKI------ 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---PAIIYADDAYSKEVMKR 259 G N+G HI ++ AK L E LP E+ AI+ ADD Y + + R Sbjct: 181 -GLVLNVGSAHIGEFGGREQIAQAKGELVEA-LPSEAEGGTAILNADDPYVRAMASR 235 >gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/361 (19%), Positives = 138/361 (38%), Gaps = 58/361 (16%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I DF L N L+ Q + + +++D+R + G +F+A+ G DGH FI +A Sbjct: 1 MIPMDFDWLANVLTT-DYQGDNQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQ 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA ++V + + P +V +TR L + + + +A+TG+ G Sbjct: 60 KGAIGVIVQHKVDV---------DIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ V+++C + + S +T +F +N + P +T + Sbjct: 111 KTT----VKEMC--AAILSVHGDVLATKGNF--NNDIGVP----------------LTLL 146 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLG-----------------RDHIDYHQTQQAYFN 228 +E QHR I+L A + H++ + Sbjct: 147 RLEP------QHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAK 200 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 AK +F+ L + AI+ D +S+ + + + S + + + Sbjct: 201 AKGEIFDG-LKDDGVAIVNCDSEFSQYWLDKLEGRNVKCFSTTEKLDIWAENITLDANAR 259 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 T+ + K LPG+ + NAL+AA L + + L + V GR Sbjct: 260 ASFTLCTKNKQVPVTLALPGKHNISNALIAAALTSEFDVTLEEIANALATMGDVKGRVNL 319 Query: 349 V 349 + Sbjct: 320 I 320 >gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM 13280] Length = 482 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 41/383 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 +R V DSR + +FVA G + DG+ F P AI GA A+V++ + + + Sbjct: 23 DRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELVDLAL 82 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + ILV ++ +FL A + ++ +TG+ GK++ + + ++ Sbjct: 83 EHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAK----RYR 138 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIK 203 + +T +F N L + L+ LS+ T + V S G + + Sbjct: 139 V--HATAGNF---NSL-------IGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQ 186 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-------EELLPKESPAIIYADDAYSKEV 256 G T +G HI +++ AK + E S +++ +D ++ + Sbjct: 187 PTFGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFI 246 Query: 257 MKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVE-GKDFDFLFPLPG 308 ++ A AG V+ G VCA H + ++ E G F +PG Sbjct: 247 IENFARPAGLDVVLAGTSTD----DDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPG 302 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 V NAL AA + +G+ + E +L + GR V + G R+ D Y + Sbjct: 303 AQSVPNALFAAAVAHRLGVPGFEIDEAFGELQMT-GRRTQVRHAACGARVIDDSYNASPE 361 Query: 368 SLEMILKNIRTI-TSGRIIVVFG 389 S+ L T+ +G I V G Sbjct: 362 SMAAGLNLFSTLPCTGSRIAVLG 384 >gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 472 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 151/376 (40%), Gaps = 51/376 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V DSR ++ G +FV + G DGH +I QAI GA A + S ++ A Sbjct: 27 VTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQAIKNGAVATLWS-----KEAQAAPADQ 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 I++VD+T + A+ ++ +TG++GK++ + + + +++ Sbjct: 82 IAIVLVDDTLVAMQALANYYRNSLNPKVIGITGSNGKTTTKDMTANVLK----AKYKVHK 137 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIA-- 206 T +N + P Y Q V G+ D ++ + IA Sbjct: 138 TEG----NYNNEIGLP----------YTLLQMPADTQVVVCEMGMSDFGEIEVLSKIAQP 183 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMK----R 259 T +G H+++ ++ AK+ + + L KE IY A++ +E + R Sbjct: 184 DIAVITLIGESHLEFLGSRANIAKAKLEILKGL--KEDGLFIYPANEPLLQEAGQALGDR 241 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALV 317 A + G + Y K H QV S+ P+ G + V NA++ Sbjct: 242 ARSFGLDNTADFYAYDLKEDKNKTYFHTNIDDQVLCSI---------PVMGAYNVGNAMI 292 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN- 375 A + + + + L + + R E++ T S G I D Y + S++ +LK+ Sbjct: 293 ALTVAQELKVPIEQAIFQLSQFKLTKNRLEWL-TASNGASILNDAYNASPTSIKAVLKSF 351 Query: 376 --IRTITSGRIIVVFG 389 + T GR +V G Sbjct: 352 SQVETQAEGRRLVALG 367 >gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Azorhizobium caulinodans ORS 571] gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium caulinodans ORS 571] Length = 476 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 145/368 (39%), Gaps = 28/368 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R ++ G F AI G DGH ++ +A+ GA VV +A +Q + Sbjct: 27 VTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALENGASLAVV-AADRVQGL-----PD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV + L+ + I+AVTG+ GK++ ++ G Sbjct: 81 GPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTKEALRIALSADG-------- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + S+ + +N P+ LA+ + GV V + R+ ++ Sbjct: 133 ETHASAASYNNHWGV--PLSLAR-FPRSARYGVFEVGMNHPGEITPLVRM--VRPHVAVI 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-VL 268 T + HI + +AK +F+ L P + A++ D+ ++ A G + ++ Sbjct: 188 TTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGT-AVLNRDNPLFDRLVASARAKGVKNIV 246 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S G + LK V V V G F +PG V NAL +G Sbjct: 247 SFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAVRLLGG 306 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIRTITS 381 D AL L +L PGR V + GG +D ++ +N M +L Sbjct: 307 DLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRTPVGPR 366 Query: 382 GRIIVVFG 389 GR I V G Sbjct: 367 GRRIAVLG 374 >gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] Length = 464 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/331 (22%), Positives = 121/331 (36%), Gaps = 51/331 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 22 QVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR------IPEGVGE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI- 147 + +L+VD+ + L + ++AVTG+ GK+S + + G + + Sbjct: 75 DGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVA 134 Query: 148 ------GPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 G T++ +D P I + L+ Q HV++ Sbjct: 135 SYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEI------APLARQARPHVAM------- 181 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 T + H++ K + E L P A++ AD A + Sbjct: 182 --------------VTTVAAVHLEAFDDVAGIAREKAAIMEGLEPG-GVAVLNADIAEAD 226 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + RA G R LS G + L V F G N Sbjct: 227 --ILRAAARGARQLSFGRAAQDYRLTGVEVADGMTHARADTPAGPVSFTLQSAGTHFAMN 284 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 AL A C A+G D+ L+ LE+ GR Sbjct: 285 ALGALACCDALGADAGQSLQGLERWTPYKGR 315 >gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella muelleri ATCC 29453] gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella muelleri ATCC 29453] Length = 443 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 32/259 (12%) Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 L + I+A+TG++GK++ S V +C++SGL + G A R + + Sbjct: 102 LLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMPVLEAWLVRGGKSADV 161 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 ++ +E SS L+ D + A + N+ DH+D + Y Sbjct: 162 WV----------------LELSSFQLETT--DYLDADAATCLNISEDHLDRYDDLLDYAR 203 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 K +F ++ ++ ADDA+ MKR N S+ Q +L V Sbjct: 204 TKDMIFN----GKAIQVLNADDAFCC-AMKR-ENRPIHYFSLS-QSIDYYLDSVSGSLKH 256 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 Q + + PL G V N L A LC ++G+ A +L+++ +P R E Sbjct: 257 QGADLMPQTD-----IPLQGSHNVANVLAALALCESVGLARADLLKYIRVFKGLPHRVEK 311 Query: 349 VGTNSRGGRIYVDYAHTSN 367 VG + G I++D + +N Sbjct: 312 VG--EKNGVIFIDDSKGTN 328 >gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Serratia symbiotica str. Tucson] Length = 453 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 101/383 (26%), Positives = 161/383 (42%), Gaps = 52/383 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + +I EV +D+R + AG +FVA+ G + D H F A+A GA A++VS +L Sbjct: 21 DSQIIEVKTDTRKVTAGCLFVALKGERFDAHDFAAAAVAAGAGALLVSQRLAL------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P LVV +TR L A+ + + P ++++TG+SGK+SV I G + Sbjct: 74 --DAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMTAAILSECGEVLYT 131 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHR 198 G +F D I + L L Q G H+ A + L + + Sbjct: 132 AG------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTSALARPQ 177 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD--DAYSKEV 256 NL H++ + AK +F L P + AII AD D + Sbjct: 178 AA-------LINNLAAAHLEGFGSLAGVAQAKGEIFTGL-PTDGVAIINADNNDWPHWQS 229 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 M C +F +V N Q + + + PLPG V NAL Sbjct: 230 MLDGKTVWCFSPQATAGVEFFA-SEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVANAL 288 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN--SLEMIL 373 AA L +++G V + L +L VPGR F V + ++ +D ++ +N S+ Sbjct: 289 AAAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAAN---KLLLDDSYNANVGSMTTAA 345 Query: 374 KNIRTITSGRIIVVFGCGGDRDQ 396 + + + R++VV GD D+ Sbjct: 346 QVLAEMPGYRVMVV----GDMDE 364 >gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2] gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2] Length = 460 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/339 (22%), Positives = 141/339 (41%), Gaps = 54/339 (15%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ IA GA+ +V S+A S + I + ++ L R +AV Sbjct: 59 PEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER-------KGIAV 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 G GK++ +S + + +R + I G + + + A+ + Sbjct: 111 AGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK----------------- 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRL 233 S+ V + E+ L H GI TN+ DH+ D+++ + AY ++ Sbjct: 154 SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY----VQF 203 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVT 292 ++ P + AI+ ADD +E++ + RV++ G + + ++ + +++ T Sbjct: 204 LSQIRP-DGAAIVCADDQNIREMLPQLQ---TRVITYGVEHEADYMATDIQLGDRRLSFT 259 Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 +S +G + +PG+ +YNA+ C+ GI + + + H RF+ +G Sbjct: 260 MSRKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLG- 318 Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388 G I + DYAH +E + R T RII VF Sbjct: 319 --EGNDILIIDDYAHHPTEIEATISAARA-TGKRIIAVF 354 >gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Paenibacillus polymyxa E681] gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) [Paenibacillus polymyxa E681] Length = 459 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/342 (22%), Positives = 142/342 (41%), Gaps = 52/342 (15%) Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH P+ IA GA+ +V S+A S + I + ++ L R Sbjct: 55 GH--TPEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER------- 104 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173 +AV G GK++ +S + + +R + I G + + + A+ + Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK------------ 152 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFN 228 S+ V + E+ L H GI TN+ DH+ D+++ + AY Sbjct: 153 -----SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY-- 199 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 ++ ++ P + AI+ ADD +E++ + RV++ G + + ++ + ++ Sbjct: 200 --VQFLSQIRP-DGAAIVCADDQNIREMLPQLQ---TRVITYGVEHEADYMATDIQLGDR 253 Query: 289 Q-QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T+S +G + +PG+ +YNA+ C+ GI + + + H RF Sbjct: 254 RLSFTMSRKGTALGTIELSVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRF 313 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + +G S I DYAH +E + R T RII VF Sbjct: 314 QVLG-ESNDILIIDDYAHHPTEIEATISAARA-TGKRIIAVF 353 >gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM 2876] gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM 2876] Length = 458 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 139/346 (40%), Gaps = 56/346 (16%) Query: 64 IAQGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117 I+QG + + A ++ D ++A I ++ L + + + L G+ N Sbjct: 51 ISQGIKVFIGQKADNITDDIDLVVYTAAIHNDNEELAAARAKNIPVITRAELLGEIMTNY 110 Query: 118 ---LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLA 171 + V+GT GK++ S + +I L PT ++ N S ++ Sbjct: 111 KTAVGVSGTHGKTTTTSMLTEILVNGSLD-----PTVSVGGILPSIHGNLRIGHSDNFVT 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y +S ++E N+ DH+D+ + N+ Sbjct: 166 EACEYTNSFLSFFPTIEI-------------------ILNIEEDHLDFFKDINDIRNSFG 206 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKV-CA 284 R + LLP+ +I D +E+ K NA C V++VG Y I + C Sbjct: 207 R-YVRLLPENGLLVINNDIDNVEEIYK---NAACPVITVGKTPDADYTADNISFDEFGCP 262 Query: 285 IHN--KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 ++ +Q TI G+ +PG VYN+L A + I +GID + +++ L+ H Sbjct: 263 SYDLIRQGNTI---GR---IALSVPGIHNVYNSLAAIAVAIHLGIDISTIIDSLKGFHGT 316 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RF+ GT G I DYAH + + + +++++F Sbjct: 317 DRRFQKKGT-VNGFTIIDDYAHHPAEINATINSAMNYPHKKLVIIF 361 >gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1] Length = 823 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 31/229 (13%) Query: 28 RKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +KI++++ DSR + +F+++VG K G FIP I G +V SL+ Sbjct: 25 QKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIPALIDLGVRNFIVHKGNSLK---RE 81 Query: 86 IRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + + ++VD+TRK L A R Y + P ++++TG++GK+ V ++ Q+ + Sbjct: 82 LLAKANFVLVDDTRKALQEIARYQRSYFEKP--VVSITGSNGKTIVKEWLGQVLSQ---- 135 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDG 201 ++Q+ S + ++++ P ++ A ++ G++ A+ + Q L Sbjct: 136 AYQVAK----SPKSYNSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAALERIIQPNL-- 189 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 G FTN+G H + +Q++ K+ LF K S ++Y D Sbjct: 190 -----GIFTNIGSAHKEGFSSQESKILEKLSLF-----KGSDFLVYCKD 228 >gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus pseudofirmus OF4] Length = 455 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 31/347 (8%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ VS+D+R I G +FV + G + +GH ++ AI GA+A + Q A + Sbjct: 20 EQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEG---QPVPAAL 76 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + VV +T L AS K ++ +TG++GK++ + + G + Sbjct: 77 PDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKT 136 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205 G +N + P I L+ S+ + + S +G + RL I K Sbjct: 137 QG--------NYNNHIGLPLTI-----LAMPSTCKYLILEMGMSGYG-EIERLSEIAKPD 182 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+G H++ ++ AKM + E L P ++ D S E + Sbjct: 183 LAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSP---AGFLFID---SDEPLLDGWKQSS 236 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 ++ VG+ I ++ V A + Q +EG F+ L G+ V NA + Sbjct: 237 -IMRVGFNHADILVENVAATVDGYQ--FDIEGHHFE--LSLLGKHNVKNAAYCIAVARKF 291 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 G+ ++ + L ++ + R E + N G + V+ A+ ++ MI Sbjct: 292 GLVTSKIQTGLRQISLTSMRLEKLTGNK--GELIVNDAYNASPTSMI 336 >gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase [Escherichia coli O127:H6 str. E2348/69] gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Escherichia coli WV_060327] gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Escherichia coli RN587/1] Length = 452 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 41/333 (12%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 +Q + ++ V++D+R + G +FVA+ G + D H F QA A GA A++VS + Sbjct: 17 LQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKAGGAGALLVSRPLDI--- 73 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 + P L+V +TR A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 ------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + + G + TP Y L G H A + L + Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL------GANHQGEIAWTVSLTRPE---- 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YS 253 A NL H++ + AK +F LP+ AI+ AD+ S Sbjct: 178 ---AALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAIMNADNNDWLNWQSVIGS 233 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++V + + NA + + IH+ + + T+ D L PLPG + Sbjct: 234 RKVWRFSPNAA----NSDFTATNIHVTS-----HGTEFTLQTPTGSVDVLLPLPGRHNIA 284 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 NAL AA L +++G + L L VPGR Sbjct: 285 NALAAAALSMSVGATLDAIKAGLANLKAVPGRL 317 >gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis WY96-3418] Length = 451 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 LAD I+ S D + I+ +I+ G+ G++ AI ++ N+ V+++ Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436 Query: 465 AGKGHET 471 G G T Sbjct: 437 QGAGDVT 443 >gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 484 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 21/219 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I G IFVA G + DGHLF P A+ GA ++V L + Sbjct: 48 VDTDSRLIGPGGIFVAKPGEETDGHLFAPWAVEAGAALLLVERELDLPVPQVLVPD---- 103 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 VVD + +R+ ++AVTG++GK++ + + I + G + S Sbjct: 104 -VVDALGRLAHEVVARVRALGELRMVAVTGSNGKTTTKNLLHAILETQGET------VSP 156 Query: 153 ISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 ++SF +N + P + + + ++ +L ++ + AS G + K G Sbjct: 157 VASF--NNEVGAPLTMLKVTRSTRFLVAE------MGASGLGEITRLIRMAKPDVGIVLT 208 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 +G H + K + ++LLP+++ A++ ADD Sbjct: 209 VGLAHAGGFGGIERTLVTKTEMVKDLLPEDT-AVLNADD 246 >gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sinaloensis DSM 21326] gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sinaloensis DSM 21326] Length = 441 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/306 (23%), Positives = 130/306 (42%), Gaps = 59/306 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL Q+G I A + L P+ +Y+ + S+ Sbjct: 112 VIAITGSNGKSTVTDLAGVVAKAAGL---QVGVGGNIGVPALE-LLEQPADLYVLELSSF 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S + L A +F NL DH+D + + Y AK+R+FE Sbjct: 168 ---------QLETTS---------SLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEH 209 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 ES + D A E ++G+ + ++ +K Q ++ V+ Sbjct: 210 ---AESCIVNAQDKATYPE---------------HFKGELVEF----SLTDKTQFSVQVQ 247 Query: 297 GKDFDFL------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 ++ ++L L G V NALV L +GID + L L+ + + Sbjct: 248 -QNREYLCQDNLPILATDELTLVGRHNVANALVVLALLDCVGIDVSQGLSALKSYNGLTH 306 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMG 403 R + V N G + D T+ + + + T+T ++V G G D + P++ Sbjct: 307 RCQIVADN-HGVKWVNDSKATNVASTLAALSGLTLTGKLYLLVGGVGKGADFSELAPVLA 365 Query: 404 KIALDL 409 K+ + L Sbjct: 366 KLNVQL 371 >gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella equigenitalis MCE9] gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella equigenitalis MCE9] Length = 478 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 16/118 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+ +TGT+GK++V S V+ +C+ +GL S + G S PS + + Sbjct: 123 IIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNIS-------------PSALTVVCEFEE 169 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 +S +S+E SS L D I L A + N+ +DHID+H + +AY +K ++F Sbjct: 170 KNSWPDV-ISLELSSAQL--FYTDYICLDASTILNITQDHIDWHGSMEAYIASKKKIF 224 >gi|219670366|ref|YP_002460801.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2] gi|219540626|gb|ACL22365.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2] Length = 459 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 134/317 (42%), Gaps = 33/317 (10%) Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221 T + A AL Y + Q V V +E G +D + +K + TN+G DH+DY + Sbjct: 143 TEFEVNTAMALMYFADQKVDLVLLEVGLGGAIDSTNV--VKPLISVITNVGMDHMDYLGE 200 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFI 277 T + K + + I A EV+ K+A + VG ++ Sbjct: 201 TYEEIAGVKAGIIK-------AGAITVTAADRPEVLNVIRKKAQEMNSPLWVVGDDVRW- 252 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-- 335 ++ + + + + G L GE QV NA A +C + + + LE Sbjct: 253 EIRWSGELEQEFDLA-GLRGAYNKLRLRLVGEHQVVNAATAVTVCELLKFEYGMNLERRN 311 Query: 336 -LEKLH--VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 E L V PGR E + + + +D AH + + K + R+++ G G Sbjct: 312 IYEGLRKAVWPGRLELLSLKPK---VLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLG 368 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEII--HGIPGFIEKGNRIEAI 449 D+++ K + I + LAD I+T N PRS + E + E++ G P + R+ A+ Sbjct: 369 DKEREK---VVDILVPLADEVIITKPNSPRSGNWEYLH-ELVKEKGKPVLTIEEPRL-AV 423 Query: 450 RTAIEMLNKQDVLVVAG 466 A L+K+D+L V G Sbjct: 424 EEAFRRLDKEDMLCVTG 440 >gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor obsidiansis OB47] gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/403 (20%), Positives = 167/403 (41%), Gaps = 58/403 (14%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 W E + S+ ++ ++ I V I ++ HL G E ++ ++A S +D Sbjct: 27 WVEGSDMQESTTTKMLKQNGINVYI--GHDESHL-------NGDETVIYTAAIS-KDNPE 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + + L + +FL L K +N++A++GT GK++ S + I +++ + Sbjct: 77 LLAAKRMNLKIYERAEFLGLLM-----KDFKNVIAISGTHGKTTTTSMIGYILKKANYN- 130 Query: 145 FQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 PT + +F + N + + +A Y+ S + ++ Sbjct: 131 ----PTVLVGAFVKQLSGNFVIGSKEYLVVEACEYVDSFLKFNPTI-------------- 172 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G N+ DH+DY + + N+ + F + + + DD K+++ + + Sbjct: 173 -----GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKISTSGFLVANCDDKNVKDIISQLN 226 Query: 262 NAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNAL 316 +++ + + K I + I + V+ KD + L +PG VYNAL Sbjct: 227 T---QIICISTKEKTDIFADNISCIDGYYE--FDVKNKDDETLAHIKLNIPGFHNVYNAL 281 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G++S + + + R E VG G +Y DYAH ++ L + Sbjct: 282 AAFAVASKLGVESITIEHAISEFCGASRRLEKVG-EFDGIYLYDDYAHHPTEIKASLNTL 340 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD 417 + ++ G++ +F + ++ + A L LAD IVTD Sbjct: 341 KKLSQGKVFAIF--QPHTFSRLKNLLNEFAESLSLADKVIVTD 381 >gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758] gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758] Length = 470 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/312 (22%), Positives = 126/312 (40%), Gaps = 37/312 (11%) Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++F+ R N P+L + + L + K P +A++GT GK++ S + I Sbjct: 95 EEFAEAKRRNLPML---SRAELLGQLMTNY--KTP---VAISGTHGKTTTTSMLSHIALA 146 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + L I + + + R+ P +++ +A Y +S H S + Sbjct: 147 ANLDP-TISVGGILKAIEGNIRVGGPD-LFITEACEYTNS--FLHFSPKI---------- 192 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G N+ DH+D+ + N+ LF +LLP+ +I D +E+ Sbjct: 193 -------GIILNVDADHLDFFKDLDDIRNS-FHLFAKLLPENGTLVINGDIDKIEEITS- 243 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFL-FPLPGEFQVYNAL 316 + CRV++ G + + + + + V +G++ L + GE VYNAL Sbjct: 244 --DLSCRVITFGKEASLDYSAANITYNEQGNASFDVVKDGQNVAHLALAVGGEHNVYNAL 301 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G+ + + L H RFE+ G G I DYAH + LK+ Sbjct: 302 AAIAVADILGVPAETIQTGLASFHGTDRRFEYKG-EVGGVTIIDDYAHHPTEIAATLKSA 360 Query: 377 RTITSGRIIVVF 388 ++ +F Sbjct: 361 AHYPHKKLWCIF 372 >gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas naphthalenivorans CJ2] gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 466 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R +Q G +FVA+ G D H F+PQA AQGA A + + L++ + P Sbjct: 27 VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQ--HGLRE------AGLPG 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 L V +TR L A+ + ++AVTG++GK++V + I + Sbjct: 79 LEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILR 124 >gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Allochromatium vinosum DSM 180] Length = 452 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 136/324 (41%), Gaps = 33/324 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR G +FVA+ G + DGH ++ A A GA A +V L + Sbjct: 22 FSSVGTDSRADCTGQLFVALRGERFDGHEYVAAAQAAGAVAAMVDQPLPL---------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P VVD+TR L A+ + P ++A+TG++GK++V V I ++G G Sbjct: 73 LPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGRVRATRGN 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P + A+ +L + + A+ HG + + + Sbjct: 133 L--------NNDIGMPLTLLSARDEDFLV------LEMGANHHGEIGYMTEIARPEVALI 178 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN GR H++ + + AK + LP++ ++ D Y + R G R+L+ Sbjct: 179 TNAGRAHLEGFGSVEGVARAKGEIARG-LPEDGVFVVSGDSPYLG--LWRELAEGRRMLT 235 Query: 270 VGYQGKFIHLK-------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + A + T V +++ L G+ V NAL A+ Sbjct: 236 FALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAASAGA 295 Query: 323 IAIGIDSALVLEHLEKLHVVPGRF 346 +A+G+D A + LE L V GR Sbjct: 296 LALGLDRAAIAAGLESLTPVKGRL 319 >gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M21] Length = 467 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 61/378 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + G +FVA+ G + DGH FI A++QG + +++ + + + Sbjct: 26 VSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQGITVFLAEESWA--ERHELPKGAGAV 83 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LV D R L A Y + N+ + VTG++GK++ + +I Q GP Sbjct: 84 LVPDTLRALGDLAA---YHRRRFNLKTVCVTGSNGKTTTKEMLARILA-------QTGP- 132 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206 + +N + P I+ L+ V + + S G +D + IA Sbjct: 133 GLKTEGNLNNLIGLPLTIF---RLTGRERWAVFEIGM--SEFG----EIDRLAEIAEPQV 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------- 256 G TN H++ + + AK LF L P S A+ DD Sbjct: 184 GIITNAFPAHLETLGSVEGVARAKGELFLRLKPG-SVAVYNVDDPLVSACPTHLNVTRLT 242 Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A + + S+G +G+ L+ +QQVT+S G+ +YN Sbjct: 243 FGLRGAEVSSASIQSLGKRGESFTLR---LPDGEQQVTLSAYGR-----------HNIYN 288 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372 AL AA A+G+ ++ + LE+ RF+ G +D ++ +N S+ Sbjct: 289 ALAAAAAAHALGVSGEVIRQGLEEFSPYDKRFQL---EEVAGVTLIDDSYNANPASMAAA 345 Query: 373 LKNIRTITS-GRIIVVFG 389 L ++ + GR++ V G Sbjct: 346 LTTLKELQGEGRLVAVLG 363 >gi|167041008|ref|YP_001663993.1| cyanophycin synthetase [Thermoanaerobacter sp. X514] gi|300913781|ref|ZP_07131098.1| cyanophycin synthetase [Thermoanaerobacter sp. X561] gi|307725533|ref|YP_003905284.1| cyanophycin synthetase [Thermoanaerobacter sp. X513] gi|166855248|gb|ABY93657.1| cyanophycin synthetase [Thermoanaerobacter sp. X514] gi|300890466|gb|EFK85611.1| cyanophycin synthetase [Thermoanaerobacter sp. X561] gi|307582594|gb|ADN55993.1| cyanophycin synthetase [Thermoanaerobacter sp. X513] Length = 876 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID +T + A+ A Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288 L E + ++ +++ ADD + + +RA G + Y H++K A++ K Sbjct: 594 LVVEAVKEDGYSVLNADDPMTPYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651 Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769 Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448 +G+I D + +D + R P ++ + G I G I++ EA Sbjct: 770 SSILKVGEICGQGFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829 Query: 449 IRTAIEMLNKQDVLVV 464 +R A+ D++VV Sbjct: 830 LRAAMYNAEAGDLIVV 845 >gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus sp. 2_1_36FAA] Length = 456 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 94/399 (23%), Positives = 167/399 (41%), Gaps = 65/399 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I++G +FV + G + DGH FI A AQGA A + S + P ++V Sbjct: 32 DSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATL----------SERPVAEAPYILV 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148 D+ K A K ++LAVTG++GK++ + Q+ S G + +IG Sbjct: 81 DDVLKAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIG 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 T+ +D + G H+ D H L + K G Sbjct: 141 LPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DIHLLSELAKPKTG 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T +G H+++ ++ KM++ + L K+ I+ AD +++ A C++ Sbjct: 180 IVTLVGEAHLEFFGSRAEIAQGKMQIADG-LRKDGLLIVPAD-----KIVNEFLPADCKL 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNALVAAGLC 322 + G I L ++ +++ ++S E +FL P+ G++ NA++AA Sbjct: 234 VRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKYNATNAMIAAYAA 285 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381 + G+ + + KL + R E+ + G I D Y ++ +IL+ TI + Sbjct: 286 LQEGVSETAIAQAFSKLELTRNRTEWKKA-ANGADILSDVYNANPTAMRLILETFSTIPA 344 Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 GR + V + + + G + L + IVTD Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTD 382 >gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens MI-1] gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens MI-1] Length = 462 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 8/182 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+DY+ T++ A R F L E A+I DD KE+ C+V++ Sbjct: 183 TNIEDDHLDYYGTRENIAKA-FRQFLAKLSAEGLAVICLDDPVLKEITT---GLTCQVVT 238 Query: 270 VGYQGKFIHLK-KVCAIHNK-QQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIG 326 G G + KV N Q + + + L +PG + NA+ A + + Sbjct: 239 YGSLGSGADYQIKVLETRNGVNQGEVYFQEERLGMLELHVPGYHNLLNAMAAVAIGRHLN 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 +D + L K RF+ +G G + DYAH ++ L+ RT GRI+ Sbjct: 299 LDFEKIARALRKFTGAKRRFQVIG-KVNGITVVDDYAHHPTEVKATLQAARTSHPGRIVT 357 Query: 387 VF 388 +F Sbjct: 358 IF 359 >gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium tuberculostearicum SK141] gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium tuberculostearicum SK141] Length = 487 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 109/422 (25%), Positives = 170/422 (40%), Gaps = 60/422 (14%) Query: 84 ATIRSNTPILVV--DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 A I + P LV DN + L A+ + G H + +LA GT GK+S S Q Sbjct: 81 AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEG-HKQVLLA--GTHGKTSTTSMTVSAMQ 137 Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +GL SF IG Q NR T ++ G T + A + D Sbjct: 138 HAGLDPSFAIG--------GQLNRAGT-------------NAHGGTGEAFVAEADESDAS 176 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 L +A T + DH+D+ +++AYF + + P+ ++ A+D ++ Sbjct: 177 LLRYSPDVA-VLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAG 235 Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG-------E 309 +RA G V++ G K F + A +++ T EG D LPG E Sbjct: 236 ERALERGINVVAYGSAEKSFTSTVPLAAELVREETT--AEGMDTTVKLDLPGVSETVRYE 293 Query: 310 FQ------VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360 Q V N++ A + G A + E L V RFE+ G+ + G R++ Sbjct: 294 LQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVDKQGKPVRVFD 353 Query: 361 DYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 DYAH + +L+ R GR+I F + AL LAD A+V Sbjct: 354 DYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVV 413 Query: 416 TDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 D E P E I + II +P ++ + + A R + ++ DV++ G G Sbjct: 414 LDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSV 473 Query: 471 TV 472 T+ Sbjct: 474 TM 475 >gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M163/99/10] gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis B2/94] gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M644/93/1] gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M13/05/1] gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella pinnipedialis M292/94/1] gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti M490/95/1] gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti B1/94] gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella sp. F5/99] gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella ceti str. Cudo] gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1] gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1] gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94] gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10] gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. F5/99] gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti M490/95/1] gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1] Length = 481 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLSHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha carboxidovorans OM5] Length = 478 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 145/372 (38%), Gaps = 35/372 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S DSR I G + AI G+ DGH F+ A+ G V++ Q A + Sbjct: 27 INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGLAVIA-----QSQRAKFSGD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV + L A + I+AVTG+ GK+S ++ + Q G Sbjct: 82 LPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTKEALRTVLQAQG-------- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGIKLI--- 205 + +S+ + +N P+ LA+ Q E +H + L +KL+ Sbjct: 134 ATHVSAASFNNHWGV--PLSLAR-----CPQDAKFAVFEIGMNHAGEIEPL--VKLVRPH 184 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264 T + H+++ +A +AK +F L P + AI+ D++ + +RA G Sbjct: 185 VAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGA-AILNRDNSQFARLAERAKACGV 243 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R+++ G A+H + V V D + + G N+L Sbjct: 244 ARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAAST 303 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEM-----ILKNIR 377 +G D AL L GR GG +D ++ +N M +L + Sbjct: 304 LVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRVA 363 Query: 378 TITSGRIIVVFG 389 GR I V G Sbjct: 364 IGPQGRRIAVLG 375 >gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio salexigens DSM 2638] Length = 463 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V DSR ++ G +F I G DGH F+ QA GA A+VVS + +F Sbjct: 25 EIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDAGAVAVVVSQF--MPEF-----E 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P ++V +T + L A+ K ++AVTG++GK++V + + SG Sbjct: 78 DKPTIMVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVKEMLAHVLSGSG 130 >gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas asaccharolytica DSM 20707] gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas asaccharolytica DSM 20707] Length = 461 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 43/366 (11%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA R G ++A+TG++GK++ +++ +GL G T S A+ L Sbjct: 97 FAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223 P Y+ +E SS LD + + N+ DH+D Y Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHQM 193 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKV 282 + Y AKMR+ + P + I + +D +++ ++K AG R+ + K V Sbjct: 194 ELYARAKMRITQNQEPTDY-FISWIEDDWTQRLLKEPGMGAGRRIF---FSTKASSDDAV 249 Query: 283 CAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 A + Q+ +++ F+ L L G+ V NAL A+G+ ++ LE Sbjct: 250 VASSHNGQLRFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETF 309 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 VP R E++ + I A NS L+++R T I++ G G D+ Sbjct: 310 TNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYN 364 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459 +M + + + +T D+ K+ IP E + +AI A +M Sbjct: 365 DLMELVKEKVVGLIYLTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMATAG 418 Query: 460 DVLVVA 465 D ++++ Sbjct: 419 DTVLLS 424 >gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99 ++ G +F+A+ G DG I A+ +GA A+ AY ++ ++ P++ V Sbjct: 1 MRPGDLFLAVPGINVDGRAHIADALKRGAAAV----AYEVEGSIVLPITDVPLIPVKGLA 56 Query: 100 KFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSF 156 LS A R YG N++ VTGT+GK+SV V Q G +G T Sbjct: 57 AQLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGS 116 Query: 157 AQDNRLTTPSPI 168 Q R TTP PI Sbjct: 117 LQSGRHTTPDPI 128 >gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis DSM 16608] Length = 826 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 156/366 (42%), Gaps = 30/366 (8%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 +E I+ V +DSR + +F A+ + DGH +IP+ +G VV + +D++ Sbjct: 20 KEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVETV--PEDWN 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ L V + + L A R ++ I+ +TG++GK+ V ++ Q L Sbjct: 78 RRY-PDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSNGKTMVKEWLYQ------LL 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q+ T + S+ ++++ P + L L+ + GV + H D I+ Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGISQPGEMSALH--DIIQ 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262 G FT LG H + + A K+ LF ++ AI+Y+ DD + Sbjct: 184 PTIGVFTCLGSAHQENFPSLDAKCREKLHLFH-----DTQAIVYSLDDEVLNRCLDEYDY 238 Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAG 320 G ++ S + ++K + + VT + + GK+ + P + V N++ A Sbjct: 239 KGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVVNSITCAV 298 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377 + +G+ A + E + L V R E V G + D Y NSL++ L N R Sbjct: 299 TALQLGVTPAALGERMALLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFMNRR 357 Query: 378 TITSGR 383 GR Sbjct: 358 PDHKGR 363 >gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans serovar Lai str. 56601] Length = 466 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 25/292 (8%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +FV ++GN+ DGH FI AI++GA +V + + + + + + V NT L Sbjct: 45 LFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYK-NLNLEEKSKAIPVKNTLTALGK 102 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 AS + ++AVTG+SGK++ + + S+ ++ +N + Sbjct: 103 LASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESAL------VVTEKNYNNEIGL 156 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQ 223 P ++ +S Q V +H + RL I K T +G HI++ ++Q Sbjct: 157 PFTLF------KISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQ 210 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 + AK + E L K+ + Y + YSK + + G +++ K+ Sbjct: 211 KNIAKAKGEIVEGL--KKGGKLFYPNTGEYSKILKNKTRKHGNKLV-------LTKSDKI 261 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 +I K+ +E K+ + LPGE + N VA AIG + E Sbjct: 262 FSILQKKSSGFLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQE 313 >gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas subvibrioides ATCC 15264] gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas subvibrioides ATCC 15264] Length = 492 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 32/160 (20%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP--IYLAKA 173 ++A+TGT+GKS+ + + + +++GL+ IG I A L+ P+P +Y+ + Sbjct: 117 KVVAITGTNGKSTTTALIGWVLKQAGLT-VHIGGNIGIGVLA----LSAPTPDAVYVVEV 171 Query: 174 LSY---LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 SY L++ V++ TN+ DH+D H + Y AK Sbjct: 172 SSYQLDLTTSFAPDVAI---------------------LTNISPDHLDRHGGMEGYVAAK 210 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 RLF+ + P E A+I DD + + + ++ G R+ ++ Sbjct: 211 ARLFQVMSP-EKVALIGVDDDWGWKTVNALNDRGLRLSTI 249 >gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. JA-3-3Ab] Length = 445 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 41/319 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + +DSR +Q G +FVA+ G + DGH FIPQA+++GA A++ Sbjct: 26 VQALCTDSRRLQPGSVFVALRGERFDGHDFIPQALSKGAVAVISQRPV-----------E 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P V +T A + ++A+TG++GK++ + R G Sbjct: 75 GPHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKTTTKEMLAAALSRYG-------- 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI-KLIAG 207 S + S A N + I +A+ L L + V +E + G + RL + + Sbjct: 127 -SVLKSEANHN-----NDIGVAQTLLRLQPEHQFAV-LEMAMRGPGEIRRLAQMARPTHA 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T++G HI +++A AK L +EL + A++ +D + A + Sbjct: 180 LITHIGTAHIGRLGSREAIAAAKCELLQEL--GQGIAVLNGEDPLL--LATAASLWSGKT 235 Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+ G QG + Q T++VEG PLPG N + ++G Sbjct: 236 LTYGLAQGDL------RGEWDPQAQTVTVEG--LTLPVPLPGRHHALNWMGVLAAVRSLG 287 Query: 327 IDSALVLEHLEKLHVVPGR 345 ++ + E L+ + GR Sbjct: 288 LNWERLQEPLDLPLPLEGR 306 >gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 460 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 54/335 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 G +A+V S+A IR + P +V + L S + + +AV G Sbjct: 63 NGVDAVVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L PT I YL K S L + Sbjct: 114 HGKTSTTSMIGQI-----LVEADADPTVIIGGEVD----------YL-KGSSCLGKGHFS 157 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V + S + R I + TN+ DH+D+++T NA F E LP+ Sbjct: 158 VVEADESDGSFLKLRPHTIVI-----TNIEDDHMDHYKTMDNLLNAFCE-FVETLPENGK 211 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEG 297 AI+ D+ + VM R ++ G Y K IH +++ I++E Sbjct: 212 AIVCGDNESIRYVMNRVKR---NFITYGLDDSNDYVAKNIHYVDSTLVYDIYHKGINIE- 267 Query: 298 KDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +PG+ V N+L VA C G+++ ++ + L K RFE G + Sbjct: 268 ---RVRLRVPGDHNVLNSLAAFIVAHDCC---GVEARVITKGLGKFIGAKRRFETKG-HV 320 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G + DYAH ++ LK + + R+I VF Sbjct: 321 AGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVF 355 >gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase [Kitasatospora setae KM-6054] Length = 480 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 31/180 (17%) Query: 105 FASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159 A RL HP LAVTGT+GK++ + I +G + +G Sbjct: 107 LAWRLRAPHPATGEPAPWLAVTGTNGKTTTVQMLASILTAAGKRTAAVGNVGV------- 159 Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 P+ A L+ + ++VE SS+ L H +++ +G+ NL DH+D+ Sbjct: 160 -------PVLDA----VLAEEPYDVLAVELSSYQL--HWAPSLRVHSGAVLNLAPDHLDW 206 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 H + +AY AK R++E A +Y AD A V + GCR + G + Sbjct: 207 HGSMEAYAAAKGRIYE----GNQVACVYNLADPATEALVREADVEEGCRAVGFGLDAPSV 262 >gi|167038658|ref|YP_001666236.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117050|ref|YP_004187209.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857492|gb|ABY95900.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930141|gb|ADV80826.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 876 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 38/376 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID +T + A+ A Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288 L E + ++ +++ ADD + + +RA G + Y H++K A++ K Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651 Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRIN 769 Query: 397 GKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEA 448 +G+I D + +D + R P ++ + G I G I++ EA Sbjct: 770 SSILKVGEICGQGFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEA 829 Query: 449 IRTAIEMLNKQDVLVV 464 +R A+ D++VV Sbjct: 830 LRAAMYNAEAGDLIVV 845 >gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus downei F0415] Length = 454 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/370 (20%), Positives = 152/370 (41%), Gaps = 53/370 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + I+ + DSR I +G +F+ + G + DGH FIP A GA A FS Sbjct: 20 QFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++V + A K +++AVTG++GK++ + + + Sbjct: 69 RIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTKDMIHDVLA----T 124 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV--SVEASSHGLDQHRLDG 201 +++I T +N + P V H+ S + + Q L Sbjct: 125 TYKIYKTQG----NYNNEIGLPYT--------------VLHMPDSTQKLVLEMGQDHLGD 166 Query: 202 IKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 I L++ G T +G H+++ +++ KM++ + K+ I+ AD Sbjct: 167 IDLLSKIAQPKIGIVTLIGEAHLEFFGSREKIAQGKMQIANG-MAKDGTLIVPAD----- 220 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 +++ +V+ G + I L ++ + K ++ +V D P+ G++ N Sbjct: 221 KIINDYLPDNQKVVRFG-PDQDIFLTEL--VERKDSLSFAVNFMDGLIELPVTGKYNATN 277 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 A++A + G+ + L+ L + R E+ S G I D Y ++++IL Sbjct: 278 AMLATYVGQLEGVADEAIRSALKNLVLTKNRTEWKKA-SNGADILADVYNANPTAMKLIL 336 Query: 374 KNIRTITSGR 383 + T+ + Sbjct: 337 ETFLTLPANE 346 >gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate-d-alanyl-d-alanyl ligase [Heliobacterium modesticaldum Ice1] Length = 498 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 67/351 (19%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILV 94 DSR + G +F A+ G K DGH F+P A+A GA VV + D ++A +R ++V Sbjct: 32 DSRKVAPGDVFFALPGEKVDGHDFVPAALAAGAACAVV---RRIDDGWTAALRPGQGLIV 88 Query: 95 VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 V++ + L A + ++AVTG++GK+S + + +G Sbjct: 89 VNDGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTKDLL----------AAAVG------ 132 Query: 155 SFAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206 AQ + + +P + I L L + Q + VE G Q + + IA Sbjct: 133 --AQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALI-VEMGMRGKGQ--IAALCRIARPDV 187 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G H++ + +A AK L + L K A++ +D ++V+ ++ C Sbjct: 188 GLLTNIGPVHMELLGSMEAIARAKGELLQSLSDK-GKAVVNGED---RQVVAETLSSRCP 243 Query: 267 VLSVGYQ----------GKFIHLKKVCAIHNKQQVTISVEG------------------- 297 V+ G G V AI + + +G Sbjct: 244 VVYAGTSPEALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYE 303 Query: 298 -KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 F+FL PLPG QV NAL+A A+G+D A+ L + + R+E Sbjct: 304 ESTFEFLLPLPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWE 354 >gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter tengcongensis MB4] gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/300 (21%), Positives = 108/300 (36%), Gaps = 81/300 (27%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173 +AV G+ GK++ S + I R+G PT I + + R+ S ++ +A Sbjct: 112 VAVAGSHGKTTTTSLISVILDRAGYD-----PTVLVGGEIDAIGGNVRVG-KSEYFVTEA 165 Query: 174 LSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 Y S + +++V N+ DH+DY + Sbjct: 166 CEYTDSFLKFYPYIAV---------------------ILNVDSDHLDYFKNIDN-IKQSF 203 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMK----------------------RAHNAGCRVLS 269 R F L+P + + DDA + V+K GC + Sbjct: 204 RQFASLVPSDGFVVACKDDANTMHVIKGLEKNIVTYGINEKSDWQAKDITYDEKGCASFN 263 Query: 270 VGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 V Y+GKFI H K +PG+ +YNAL + + +G+D Sbjct: 264 VYYRGKFIGHFK-----------------------LSIPGKHNIYNALASLAVTYLLGVD 300 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + E++++ RFE G G + DYAH + L+ + RII +F Sbjct: 301 TEKAKEYIKEFKGTHRRFEVKGV-VEGVTVVDDYAHHPAEIHATLEAAKNYPHKRIIAIF 359 >gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidiphilium multivorum AIU301] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 31/249 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E VS DSR G +FVA+ + DGH F+P A A+GA ++V+ +D A Sbjct: 22 EADATGVSIDSRTTAPGELFVALA-DARDGHDFVPDAEAKGAACVLVA-----RDVGA-- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P L+V++ + L+ + ++AVTG+ GKS+ +++I LS+F Sbjct: 74 ---GPALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRI-----LSAF- 124 Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204 G T + +SF +N + P+ LA+ L + V + + +H + L I + Sbjct: 125 -GATHAAEASF--NNHIGV--PLTLAR-LPAEADFAVVEIGM---NHPGEIAPLSAITRP 175 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G T +G H+ + +A + K L ++P A + + + +RA + G Sbjct: 176 HVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVP--GGAAVLPRGPFLSRLARRARD-G 232 Query: 265 CRVLSVGYQ 273 RV+S G Q Sbjct: 233 VRVVSFGAQ 241 >gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D str. JGS1721] gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D str. JGS1721] Length = 457 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360 >gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E str. JGS1987] gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC 8239] gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E str. JGS1987] gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC 8239] Length = 457 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360 >gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. holarctica FSC022] gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. holarctica FSC022] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 144/367 (39%), Gaps = 42/367 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIITCLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 LAD I+ S D + I+ +I+ G+ G++ I ++ N+ V+++ Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHVIYFLEKLANENTVILI 436 Query: 465 AGKGHET 471 G G T Sbjct: 437 QGAGDVT 443 >gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis 1330] Length = 481 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100] Length = 818 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 81/369 (21%), Positives = 150/369 (40%), Gaps = 36/369 (9%) Query: 23 MQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 +Q+ E +I + DSR I +F AI G DGH F+ A G + VV+ L Sbjct: 18 LQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAGVRSFVVTKVPELS 77 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 F L+V+N + L A+ + P ++ +TG++GK++V ++ Q+ Sbjct: 78 QF-----PEANFLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEWLFQL---- 128 Query: 141 GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 + P I S + ++++ P ++ +A L G+ + S G + Sbjct: 129 ------LYPHYAIIRSPRSFNSQIGVPLSVWGIQAQHEL---GIFEAGI--SRKGEMGNL 177 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVM 257 + I+ G FT LG H + ++ K+ LF E+ +IY DDA + Sbjct: 178 ANIIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFAEV-----DLLIYRRDDATVHRAI 232 Query: 258 KRAHNAGCRVLSVG---YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 K + G + L+ + +++ K N + + + P + N Sbjct: 233 K---DLGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIEN 289 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ + + +G+ S + E + +L V R E + + I Y +SL + L+ Sbjct: 290 AIHCWAVLLHLGLKSEEIAERMAQLEPVAMRMELLDGRNNCLIINDTYNADLSSLRLGLQ 349 Query: 375 NIRTITSGR 383 +R GR Sbjct: 350 WMRQHEHGR 358 >gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans JJ] gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans JJ] Length = 470 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 125/314 (39%), Gaps = 32/314 (10%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N +AV GT GK++ S + I +G I ++++ RL Sbjct: 119 NGIAVAGTHGKTTTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARL------------- 164 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 QG ++ S G + IA TN+ DH+D++ A +A + F Sbjct: 165 ---GQGEYLIAEADESDG----SFLCLSPIASVVTNVDADHLDHYADLAAIDDAFVD-FL 216 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +P ++ DD ++ R + +L+ G + K+ + ++++ Sbjct: 217 NGIPFYGVNVVCLDDPGVARLLPRVNRP---ILTYGVTSQARLRGKILETGAASRFSVTL 273 Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +GKD + PG V NAL A GL + GI+ ++ L K V RFE G R Sbjct: 274 DGKDLGEMRLAHPGRHNVLNALGAIGLSLEAGIELPVIAAALAKFGGVGRRFERKG--ER 331 Query: 355 GGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLAD 411 G + V DY H + L RT+ R +VV R + + G + AD Sbjct: 332 NGVVVVDDYGHHPAEIRATLATARTVYPDRRLVV-AFQPHRFSRTKALFGDFCTCFEAAD 390 Query: 412 IAIVTDDNPRSEDP 425 ++T+ P SE P Sbjct: 391 ELLLTEIYPASEAP 404 >gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. AzwK-3b] Length = 479 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 57/332 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R ++ G +FVA+ + DGH F+ QA+ +GA A +VS D + P+ Sbjct: 26 VSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDKGAAAALVSHVPPGVDAA-----RAPL 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SF 145 L+VD+ + L + ++A+TG+ GK+S ++ + G + + Sbjct: 80 LIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTKEMLRDVLSSHGRTHAAEASYNN 139 Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G T++ D + + P I + LS HV++ Sbjct: 140 HWGVPLTLARMPADTQFAVIEIGMNHPGEI------APLSRMARPHVAM----------- 182 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVM 257 T + H+ ++ + K +FE L +E A +Y D A S + Sbjct: 183 ----------VTTVAPAHLAAFESLEGIAREKASIFEGL--EEGGAAVYNGDLAVSPILA 230 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVY 313 A +LS G H +V I K T++ EG+ + F +PG Sbjct: 231 DTAARHAAHLLSFGESPAMHH--RVTRITLKNACTVA-EGRAWRSPVLFKIMVPGRHFAV 287 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 NA+ + A G+D A V+ L + GR Sbjct: 288 NAMGVLAVTHARGLDRAKVVTSLGQWQPGSGR 319 >gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate-D-alanyl-D-alanine ligase [Streptomyces avermitilis MA-4680] Length = 471 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 32/232 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR +++G +FVA G + DGH F + GA A++ S + P Sbjct: 31 VVRDSREVESGSLFVAFAGERVDGHDFAAAVVEAGAVAVLASRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+ + L A + + ++A+TG++GK+S + Q+ + + F G Sbjct: 80 IVVDDVQTALGALARHVVERLGATLVALTGSAGKTSTKDLIAQVLRSKAPTVFTPG---- 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR--LDGIKLIAGSF 209 + +N + P L+ LS+ T V E + G+ R D G Sbjct: 136 ----SLNNEIGLP--------LTALSATEETKFLVLEMGARGIGHIRYLADLTPPKVGLV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259 N+G HI ++ AK L E L P E AI+ ADD + + R Sbjct: 184 LNVGTAHIGEFGGREQIAQAKGELVEGLPPAEDGGAAILNADDPLVRAMASR 235 >gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum BKT015925] gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum BKT015925] Length = 458 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/344 (23%), Positives = 140/344 (40%), Gaps = 55/344 (15%) Query: 64 IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HP 114 I +GAE + + +++D ++A I + P LV + + ++ + G H Sbjct: 52 IEKGAEIYIGHNKDNIKDVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHK 111 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171 NI A++GT GK++ S + I + L PT + N S ++ Sbjct: 112 YNI-AISGTHGKTTTTSMLSHITLSANLD-----PTILVGGNLDVINGNVRVGNSDYFVT 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y +S L + GI L N+ DH+D+++ N + Sbjct: 166 EACEYKASF-------------LKFYPYIGIIL------NIEADHLDFYKDINDIQNTFL 206 Query: 232 RLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + F +L+PK+ I+ ADD A SKEV C V++ G + K + N Sbjct: 207 K-FAKLIPKDGFLIVNADDERCLAVSKEV-------DCNVMTFGINNGEVRAKNIE--FN 256 Query: 288 KQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 + T V D F +PG + ++L + +++ +D+ ++E L + Sbjct: 257 NGRPTFDVYRNDTKLFSLTLNVPGNHNILDSLASISASLSLNVDTDSIIEGLSTFYGAHR 316 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE G G + DYAH ++ L + RII +F Sbjct: 317 RFEIKGE-LNGITVVDDYAHHPTEIKAALNAAKNFPHNRIICIF 359 >gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens ATCC 13124] gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC 13124] Length = 466 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 63 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 122 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 123 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 176 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 177 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 216 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 272 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 273 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 332 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 333 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 369 >gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase [marine actinobacterium PHSC20C1] Length = 467 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 39/228 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR AG IF A+ G DGHLF A+ GA IV A + + Sbjct: 32 VQTDSRLSTAGSIFFALRGETTDGHLFAHTAVENGATLIVAERALDI---------DVAQ 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 ++V++ L A + + EN +LAVTG++GK++ + ++ I +R G + + Sbjct: 83 IIVNDGVTALQALARAVVARVRENGQLKVLAVTGSNGKTTTKNMLRTILEREGET---VA 139 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS----VEASSHGL-DQHRLDGIK 203 P SF D +PI + GVT+ S VE + G+ D RL I Sbjct: 140 PK---GSFNND----VGAPITM---------LGVTNSSKYLVVEMGADGIGDITRLQSIV 183 Query: 204 LI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + G +G HI AK + LP +S A++ DD Sbjct: 184 MPDVGIVLMVGLAHIGKFGDAATTALAKSEMVTA-LPPQSTAVLNYDD 230 >gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289] gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A] gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289] Length = 826 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 30/366 (8%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ I+ V +DSR + +F A+ + DGH +IP+ +G VV + +D++ Sbjct: 20 KDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRGVRNFVVETV--PEDWN 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ L V + + L A R ++ ++ +TG++GK+ V ++ Q L Sbjct: 78 KRY-PDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSNGKTMVKEWLYQ------LL 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q+ T + S+ ++++ P + L L+ + GV + S G D I+ Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMSALRDIIQ 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHN 262 G FT LG H + + +A K+ LF ++ AI+Y+ DD + Sbjct: 184 PTIGVFTCLGSAHQENFPSLEAKCKEKLHLFH-----DTQAIVYSLDDEVLNRCLDEYDY 238 Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAG 320 G ++ S + ++K + + VT + + GK+ + P + V N++ A Sbjct: 239 KGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVENSITCAV 298 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIR 377 + +G+ A + E + +L V R E V G + D Y NSL++ L N R Sbjct: 299 TALQLGVTPAALGERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFMNRR 357 Query: 378 TITSGR 383 GR Sbjct: 358 PDHKGR 363 >gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC20] Length = 449 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 148/377 (39%), Gaps = 57/377 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V DSR I+ +FV + G + DGH F QA GA A + S TI Sbjct: 19 ETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69 Query: 87 RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV V +T K A K I+ +TG++GK++ V+ + + Sbjct: 70 EPPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQ----K 125 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDG 201 +Q T +N L P I A + + G+ H +E S + Sbjct: 126 YQTYKTQG----NHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPD---- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254 A + T +G HI+ +++ AKM + L +P + P + + + Sbjct: 178 ----AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLL----EPFVP 229 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + G L+ G QG + ++ Q +V G F P+ G + V Sbjct: 230 NLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLGGYNVK 277 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NAL+A G+ G+ + E L + R ++V T G I D Y ++ ++ Sbjct: 278 NALIAIGIGRHFGVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLV 336 Query: 373 LKNIRTIT-SGRIIVVF 388 L + R + +GR I V Sbjct: 337 LDSFRKLPLAGRRIAVL 353 >gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar Abortus 2308] gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 6 str. 870] gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59] gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis bv. 5 str. 513] gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 4 str. 292] gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1] gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis bv. 3 str. Ether] gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 9 str. C68] gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella melitensis bv. 1 str. 16M] gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella abortus bv. 1 str. 9-941] gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin Cpn60:Cytoplasmic peptidoglycan synthetases, C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus 2308] gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella ovis ATCC 25840] gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella abortus S19] gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis ATCC 23457] gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus str. 2308 A] gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella microti CCM 4915] gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus NCTC 8038] gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. 16M] gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292] gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str. 86/8/59] gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870] gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella abortus bv. 9 str. C68] gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513] gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 3 str. Ether] gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 1 str. Rev.1] gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella melitensis bv. 2 str. 63/9] gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella abortus bv. 5 str. B3196] gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella melitensis M28] gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella melitensis M5-90] Length = 481 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. mediasiatica FSC147] gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. mediasiatica FSC147] Length = 451 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 42/367 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSIDADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 LAD I+ S D + I+ +I+ G+ G++ AI ++ N+ V+++ Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436 Query: 465 AGKGHET 471 G G T Sbjct: 437 QGAGDVT 443 >gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1] Length = 885 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/337 (21%), Positives = 130/337 (38%), Gaps = 26/337 (7%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TGT+GK++V + I + +G + +G T+T + + + A A + Sbjct: 481 IIAITGTNGKTTVTRMIGHIWRTAG---YCVGMTTTDGIYIDGHCIQKGDTTGPASARAV 537 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ----AYFNAKMR 232 L+ V +E + G+ + L + G TN+ DH+ + AY + Sbjct: 538 LTDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKS--- 594 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSVGYQGKFIHLK 280 L E + A++ ADD Y + R R L +G + F+ Sbjct: 595 LVVETVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDS 654 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + A I G D + NALVAA C + + + + L Sbjct: 655 ILYAACGSLASPICAVG-DIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLATFD 713 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 PGR + R+ +DY H + ++ +R + + R++ V GDR Sbjct: 714 QNPGRLNLLTLGDI--RVCIDYGHNPAGYQALINTVRRLGATRLVGVIAAPGDRRDDVIV 771 Query: 401 IMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI 436 +G+IA D I I D + R P ++ + G+ Sbjct: 772 NVGRIAGRGFDYIYIKEDADRRGRAPGEVAQLLRRGV 808 >gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus trichosporium OB3b] Length = 474 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S D+R + G +F AI G DGH F+ A +GA VV A+ + + Sbjct: 26 RDASGISIDTRTLAPGDLFFAIKGEARDGHDFVAAAFERGAAGAVVDEAH-----AGALA 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P+ VV + ++ L +R + ++ VTG+ GK+S + R G Sbjct: 81 GRAPLYVVKDVQESLERLGARARERSAAYVVGVTGSVGKTSTKEMAAAVLSRFG 134 >gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE str. F4969] gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE str. F4969] Length = 457 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ G I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYGINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360 >gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 440 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ V DSR ++AG +FV + G + DGH +I I +GA A++V D Sbjct: 22 QVQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDVIGKGAVAVLVDHKIDNLDVCQ---- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++VD+T L LFA + +TG++GK+S + I R G S Sbjct: 78 ----IIVDDTMAALQLFAKAYRDTLNATFIGITGSNGKTSTKDILFSILSRVGNS 128 >gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella neotomae 5K33] gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella neotomae 5K33] Length = 481 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 489 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 150/369 (40%), Gaps = 33/369 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +FVA+ G DGH FI +A A GA A +V + P Sbjct: 49 VEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAAGAAAAIVDRPI-----------DWPH 97 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V++T L A+ + +AVTG+ GK+ V + R+ + Sbjct: 98 VLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVKEAIFSALDRASRGQAH----RS 153 Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + S+ +N + P + +A + G+ H A L H + +I T Sbjct: 154 VRSY--NNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAP---LADHVRPDVAVI----T 204 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + HI+ + +A + K ++F L P + AII AD + + A AG V S Sbjct: 205 TIAPAHIENLGSLEAIADEKAQIFTGLKPGGA-AIIPADSEQFERLKAHAEAAGAEVFSF 263 Query: 271 GY--QGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + L + A + VT ++ + PGE + N+L A+G Sbjct: 264 GRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAVMACIYAVGG 323 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMILKNIRTITSGRI 384 D L ++ + GR + GGR + +D ++ +N S+ L + + R Sbjct: 324 DLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQLGQTPASRR 383 Query: 385 IVVFGCGGD 393 I V G G+ Sbjct: 384 IAVLGAMGE 392 >gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rickettsia peacockii str. Rustic] Length = 449 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 83/349 (23%), Positives = 148/349 (42%), Gaps = 48/349 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H + L Q I Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH---KGEIRELVQILKPNIT 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHN 262 +I TN+ H+++ + + AK +F K A+I AD + Y+K + + Sbjct: 179 MI----TNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFP-LPGEF-QVYNALVA 318 + + S G K + + + +QV + + K D P +P F + Y ++ Sbjct: 234 SITDIHSFGRSAK-TSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL- 291 Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 L I I G D + HL + GR E + N + R+ DY + S Sbjct: 292 --LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336 >gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella canis ATCC 23365] Length = 481 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|50512588|gb|AAT77678.1| FolC-P protein [Haloferax volcanii] Length = 838 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 149/386 (38%), Gaps = 56/386 (14%) Query: 120 VTGTSGKSSVASFVQQICQRSG-------------------LSSFQIGPTSTISSFAQD- 159 V G++GK S A V + + SG + +I P S +S+F + Sbjct: 44 VAGSNGKGSTARMVDAMLRESGAHVGLYTSPHFDDVRERVRVDGRKI-PKSALSAFVAEA 102 Query: 160 -----NRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 R P+ A AL Y GV V+V G + + +A + Sbjct: 103 KPYLVERAADGEPLTFFETVTALALWYFDRAGV-DVAVLEVGMGGELDATSAVDPVASAV 161 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ +H A AK + + P ++P + + E + VL+ Sbjct: 162 TNVSLEHTAVLGDTVAEI-AKTKA--AVAPADAPLVT----GTTGEALSVIREEAGDVLT 214 Query: 270 VGYQGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322 VG + H + VT+ + + D PL G +Q NA +A L Sbjct: 215 VGDADADSDADVRVSYGGRVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQ 274 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + ID+ + L H PGRFE +GT + +D AH ++ + + Sbjct: 275 VRPDIDAEAIHRGLRNAH-WPGRFEVMGTEP---TVVLDGAHNPDACAQVATVLDEFDYD 330 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440 + +V+G D+D G+ ++G + ++A + D R EDPE + + E ++G P Sbjct: 331 DLHLVYGAMHDKDHGE--MVGALP-EVASVVTCKADISRGEDPEILSSVFERLNG-PAVE 386 Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466 G A+ A + D ++VAG Sbjct: 387 TGGAVAAALDRARARADPDDCVLVAG 412 >gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL001PA1] Length = 485 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +AVTG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella suis bv. 3 str. 686] gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686] Length = 481 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus sp. BH72] Length = 478 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 4/110 (3%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V +DSR I G +FVA+ G + DGH F+ A+ GA A +V + + F+ + Sbjct: 31 RFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKAGAAAAMVDA----RGFTEFGDA 86 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + P+LVVD+TR L A+ + ++ VTG++GK++V +I + Sbjct: 87 SLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVKEMCAEILR 136 >gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF) [Rickettsia prowazekii str. Madrid E] gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL- 2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF) [Rickettsia prowazekii] gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia prowazekii Rp22] Length = 449 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 46/348 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH +I AI +GA A++VS + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGL 142 I++V+N+ + L A +A+TG+ GK+S ++ + Q R Sbjct: 75 KIILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +++ +G ++S A D T I+ G+ H + L Q I Sbjct: 135 NNY-LGLLINLASMADD----TEYAIF---------ELGMNH---QGEISELVQILKPNI 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +I N+ H+++ + + AK +F+ + I +++ Y+K + + Sbjct: 178 AMI----NNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNL 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFP-LPGEFQVYNALVAA 319 + + S G+ K K + +QV + + K D P +P F N Sbjct: 234 SITNIYSFGHSSK-ASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFA--NNYTGV 290 Query: 320 GLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 L I I G D + ++L + + GR + + N + R+ DY + S Sbjct: 291 LLIIDILGKDIEISAKYLADIALTKGRGKII--NIQNSRVICDYYNAS 336 >gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC 27678] gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC 27678] Length = 489 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P + +TGT+GK+S ++ GL++ +G + KA Sbjct: 112 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 151 Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +S+ + V VE SS L H D + L + TN+ DH+D+H Y K + Sbjct: 152 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 209 Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266 +F + S A++Y ADD E+ +RA A GCR Sbjct: 210 VFH----RASKALVYNADDIRVTELAERAETAEGCR 241 >gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC 17931] gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC 17931] Length = 494 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 156/378 (41%), Gaps = 46/378 (12%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRS 140 S I + P L+ + L S ++AV GT GKS+ +S + + + Sbjct: 94 STAIHEDNPELIAARAQNLRVLHRSEALAAAMGASQVVAVAGTHGKSTTSSMIAVMLDKL 153 Query: 141 GL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G SF +G + I+ + + RL + +G V+ S G Sbjct: 154 GFHPSFAVG--TVIAGYGSNARLGA-------------TGEGSWFVAEADESDGSFVRYQ 198 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I ++ TN+ DH+D+++T + + A R ++P + DD ++ + +R Sbjct: 199 PAIAVV----TNVEPDHLDFYETPERVYEAFNRFVASMVPGGVLVTCW-DDEGARALAER 253 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS---------VEGKDFDFLFPLPGE 309 A +AG V++ G + + + ++ + ++ T+ EG+ D +PG Sbjct: 254 ARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQ-DAQLRVPG- 311 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTS 366 ++N L AA I + A + L+ G RF G + G +++ DYAH Sbjct: 312 --IHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDDYAHHP 368 Query: 367 NSLEMILKNIRTITSG-RIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L+ RT+ G + VVF R Q + AL AD + V D P E Sbjct: 369 TEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQ-ALSKADRSYVLDIYPAREL 427 Query: 425 P-EKIRAEIIHGIPGFIE 441 P E + +E+I G GF E Sbjct: 428 PIEGVTSELITGA-GFSE 444 >gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus marinus clone HF10-11A3] Length = 457 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 41/310 (13%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR + +F+AI G DGH F+P + +G +++V+ + SN P Sbjct: 31 ISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKGVQSVVIKKG-----MQRLLPSNFPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 VV++T + A K I+A+TG+ GK++ + + + G ++F Sbjct: 86 WVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145 Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +IG TI ++ +D L + +G+ + L ++ I + Sbjct: 146 EIGVGLTILATEIEDKALVLE-----------MGMRGLGQI------ENLSKYSEPDIAV 188 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA- 263 I TN+G HI +++ AK + + L P E II A+D + ++ +K Sbjct: 189 I----TNIGTAHIGLLGSKKNITYAKCEISKYLNP-EGVVIIPANDPFLEKTLKEVWKGR 243 Query: 264 --GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R+L++ + F + +N TI +E F+ L G N L A Sbjct: 244 VIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFE--ISLEGFHNASNFLFAYA 301 Query: 321 LCIAIGIDSA 330 + +GID A Sbjct: 302 VAKELGIDFA 311 >gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 454 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/323 (26%), Positives = 138/323 (42%), Gaps = 47/323 (14%) Query: 53 KEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 KE G +F + + G E +VVS S+ + + I V+ FA R Sbjct: 50 KEKGVIFCFKKVTDELLNGTEMVVVSPGISMDSDIVVLSKSKGIDVIGEVE-----FAYR 104 Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 L K P I A+TGT+GK++ S + +I + SG+ ++ G + P Sbjct: 105 L-SKAP--IYAITGTNGKTTTTSLLGEIFKASGVKTYVAG------------NIGYP--- 146 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L +A +++ V + E SS L+ + K + + N+ DH++ H+T + Y Sbjct: 147 -LVEAAINANAEDV--IVAEISSFQLET--IKEFKPVISAIINITPDHLNRHKTLENYIE 201 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVC 283 K R+FE + + Y DD + K+A C V G ++ K+ Sbjct: 202 IKGRIFENQTADQFTVLNY-DDKNISSLFKKAK---CNVFPFSRNRALEYGTYLENGKII 257 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 N ++ TI D + ++ +PG V NA+VA+ + GID ++ E L V Sbjct: 258 ISANGEKSTII----DIEDIY-IPGNHNVENAMVASTMAYLAGIDIKVISETLRTFKGVE 312 Query: 344 GRFEFVGTNSRGGRIYVDYAHTS 366 R EFV N G + Y D T+ Sbjct: 313 HRIEFV-RNVNGVKYYNDSKGTN 334 >gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium dentium ATCC 27679] gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium dentium JCVIHMP022] gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium dentium ATCC 27679] gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium dentium JCVIHMP022] Length = 480 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P + +TGT+GK+S ++ GL++ +G + KA Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 142 Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +S+ + V VE SS L H D + L + TN+ DH+D+H Y K + Sbjct: 143 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 200 Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266 +F + S A++Y ADD E+ +RA A GCR Sbjct: 201 VFH----RASKALVYNADDIRVTELAERAETAEGCR 232 >gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275] gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275] Length = 455 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 82/343 (23%), Positives = 134/343 (39%), Gaps = 54/343 (15%) Query: 66 QGAEAIVVSSAYSLQD------FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPEN 116 QGAE + ++ D ++A I + L+ + L + + G + +N Sbjct: 44 QGAEIFIGQRKENISDDVNMVVYTAAIHPDNEELMAARKKNKLIVNRAAFLGQIMREYKN 103 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 +AV+GT GK+S S + I + + L PT + S N S ++ +A Sbjct: 104 SIAVSGTHGKTSTTSMLSAIFEYADLD-----PTILVGGNLSMIGGNVKIGHSNHFITEA 158 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y+ S L+ + I L N+ DH+DY A Sbjct: 159 CEYVDSF-------------LNFNPKISIVL------NIEEDHLDYFSGIDE-IKASFNK 198 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------KFIHLKKV-CAIH 286 F +LLP + II DD + +++ ++ V+ G K I ++ C I Sbjct: 199 FGKLLPPDGYFIINGDDENTADIL---YDVKATVIKYGSNKDNDAVIKNIEFDELGCGIF 255 Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + + G+D F + G +YNA+ A I GID + +++K V R Sbjct: 256 D-----LVYNGEDLGKFELSVRGLHNIYNAVAAIITSIVSGIDVETIKRNIKKYRGVGRR 310 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 FEF G G I DYAH L+ L + I R+ +F Sbjct: 311 FEFKGK-YNGATIVDDYAHHPTELKSTLSTAKRIKKNRLWCIF 352 >gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter gallaeciensis BS107] gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis BS107] Length = 470 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 10/117 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 WR ++ +S D+R I AG +FVA+ + DGH F+ QA+ +GA A +VS Sbjct: 21 WR---VDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPE 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + P+L+VD+ + L + ++AVTG+ GK+S + ++ G Sbjct: 71 GVGDDAPLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127 >gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum aromaticum EbN1] Length = 466 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 25/245 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + V +DSR I+AG +FVA+ G + DGH F+ QA A GA A +V + ++ + + S Sbjct: 21 SSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADGAAAALVDARWA---GTQPVPSPL 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI----CQRSGLSSFQ 146 P+LVV++TR L A+ + ++ VTG++GK++V + +R G + Sbjct: 78 PLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKEMCTAVLRAQARRDGHGAEA 137 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +T + D L P+ L L SS V + + G + + Sbjct: 138 V--LATAGNLNNDIGL----PLTL---LELRSSHRAAIVEMGMNRPGEIAYLAGLARPTV 188 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNA 263 TN R H+ T K ++E L P + A+I ADD Y +E+ NA Sbjct: 189 AVVTNAQRAHLQGMGTVIGIAREKGAIYEALGP-DGVAVINADDTQAGYWREL-----NA 242 Query: 264 GCRVL 268 R L Sbjct: 243 ARRTL 247 >gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL060PA1] Length = 485 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +AVTG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA2] gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA3] gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA4] gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA2] gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL103PA1] Length = 485 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +AVTG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200] Length = 488 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 47/274 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +A+ GT GK++ S + + ++G +F IG ++S + RL T S +A+A Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S+L Q + V TN+ DH+D + + Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290 F LP A++ DD +E+M R G +++ G+ V A++ QQ Sbjct: 217 DFLHNLPFYGVAVVCIDDPVVREIMPRI---GRHLVTYGFSDD----ADVQALNFSQQGH 269 Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ +GK D D L LPG+ V NAL A + ID + +++ L + + RF Sbjct: 270 QCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRF 329 Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377 + +G +G + V DY H + + +K R Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 300 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + +Q + P Sbjct: 24 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVE--HEVQG------AALPQ 75 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 76 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125 >gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus parasanguinis F0405] Length = 456 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 82/376 (21%), Positives = 150/376 (39%), Gaps = 50/376 (13%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + + + DSR I G +FV + G + DGH FI A GA A FS Sbjct: 20 QFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + P ++V++ A+ K ++ AVTG++GK++ + Q+ + L+ Sbjct: 69 EKVVEGHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLT 128 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGLDQHRLDGI 202 G +N + P + +G + +E H D H L + Sbjct: 129 YKTQG--------NYNNEIGLPYTVLHM-------PEGTDKLVLEMGQDHLGDIHLLSEL 173 Query: 203 KLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMK 258 + L G H+++ + + K+++ + +P+ ++ AD +AY E K Sbjct: 174 AHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADG-MPEGGLLVVPADPIVNAYLPEKQK 232 Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G + FI I K +T + P+ G++ NA++ Sbjct: 233 --------VVRFGPDEEIFI----TELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMI 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + G+ A + + E L + R E+ + G I D Y ++ +IL+ Sbjct: 281 AAYVALQEGVSEAAIRDSFETLQLTRNRTEWKKAGN-GADILSDVYNANPTAMRLILETF 339 Query: 377 RTITS---GRIIVVFG 389 TI + GR + V Sbjct: 340 STIPANPNGRKLAVLA 355 >gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus albus 7] Length = 454 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 26/223 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ ++S+D+R I G +F+A+ G DGH F +A+ GA A+V Sbjct: 24 EVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAMELGAIAVVTERPV----------D 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 L+VD+T + L AS K ++ +TG+ GK++ + + R SF+ Sbjct: 74 GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSVGKTTTKEMIYSVLSR----SFK-- 127 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAG 207 T+ + A N + + + K L L + V +H + R+ K Sbjct: 128 ---TLKTEANHN-----NEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMSTSCKPTIC 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 TN+G HI+ +Q+ AKM + + ++P I+ DD Sbjct: 180 VITNIGVSHIENLGSQEGILKAKMEILDG-ASADAPLILCRDD 221 >gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL050PA2] Length = 471 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRAVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEMVH 415 >gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter formigenes HOxBLS] gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter formigenes HOxBLS] Length = 498 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 25/142 (17%) Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + +FA L G E N++AVTGT+GK++V S +C+R+G + G IS Sbjct: 101 IEMFAQALKGLEKERQYRPNVIAVTGTNGKTTVTSLTGHMCRRAGKTVRLAG---NISPA 157 Query: 157 AQDNRLTTPSPIYLAK--ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 A D L L + L S Q T S+EA + + NL + Sbjct: 158 ALDVLLDVIRKDQLPEIWVLELSSFQLFTTYSLEADT---------------ATVLNLTQ 202 Query: 215 DHIDYHQTQQAYFNAKMRLFEE 236 DH+D+H + +AY AK R+F E Sbjct: 203 DHLDWHGSMEAYGAAKERIFGE 224 >gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1] gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens CN-32] gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1] gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens CN-32] Length = 488 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 115/274 (41%), Gaps = 47/274 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +A+ GT GK++ S + + ++G +F IG ++S + RL T S +A+A Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S+L Q + V TN+ DH+D + + Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290 F LP A++ DD +E+M R G +++ G+ V A++ QQ Sbjct: 217 DFLHNLPFYGVAVVCIDDPVVREIMPRI---GRHLVTYGFSDD----ADVQALNFSQQGH 269 Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ +GK D D L LPG+ V NAL A + ID + +++ L + + RF Sbjct: 270 QCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRF 329 Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377 + +G +G + V DY H + + +K R Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Neisseria mucosa C102] Length = 454 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 8/125 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR IQ G +F A+ G + D H F+ +A GA A+VV Sbjct: 8 FICQTLGLPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+SGK++V + Sbjct: 68 SR----EDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTVKEML 119 Query: 134 QQICQ 138 + + Sbjct: 120 AGVLR 124 >gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 458 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 36/374 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR ++ G +FVA+ G + D H FI +A+GA A++VS + + P Sbjct: 24 VHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSR---------EVDAAVPA 74 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +V +TR L + + +AVTG++GK++V + I + +G Sbjct: 75 IVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAA------VGEDQR 128 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + +A L+ G+ H G+ Q + I Sbjct: 129 LATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTVAVI------- 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAGC 265 TN R+H ++ + LP + A+ D AY+ + RA Sbjct: 182 TNAQREHQEF-MVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAP--VWRAAAGTR 238 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 RVLS G + V + Q + + G F+ L GE V NAL A +A Sbjct: 239 RVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACALAA 298 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGR 383 G+ + L + V GR + T + G + +D + +N S+ + + + R Sbjct: 299 GVHVPAIQAGLAEFKPVKGRLQVKYTPA--GTVVIDDTYNANPDSMRAAIDVLAGFAAPR 356 Query: 384 IIVVFGCGGDRDQG 397 ++V+ G DQG Sbjct: 357 VLVLGDMGEVGDQG 370 >gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema vincentii ATCC 35580] Length = 430 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 89/400 (22%), Positives = 151/400 (37%), Gaps = 99/400 (24%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-SLQDFSATI-- 86 N V++DSR + +F+ + G ++DGH +I QA+ QGA+ ++ +A+ +Q+ + I Sbjct: 26 FNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHILV 85 Query: 87 ---RSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGL 142 R + V+ T K L A+ + P+ + + VTG++GK++ + I Sbjct: 86 LCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASI------ 139 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-------EASSHGLD 195 FAQ R K L+S+ +SV E L Sbjct: 140 -------------FAQKYRTV--------KNEGNLNSETGLPLSVFTITKEHEVGIFELG 178 Query: 196 QHRLDGIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 +R I +A TN+G HI ++ A K +F + S + A Sbjct: 179 MNRKGEIAELAAVLKPNIAVITNIGTAHIGMLGSKDAIAQEKKHIF-SCFDETSVGFVPA 237 Query: 249 DDAYSKEVMKRAHNA--------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 D Y++ + H G + Y+G+ IHL Sbjct: 238 QDKYAEFLQDVPHGKIVTYSADPDAYTLEGLSGAEIRYKGETIHL--------------- 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 PLPG+ V+NA A + I + +E++ + GR + + R Sbjct: 283 ----------PLPGKHNVHNAFAAIAVAEYCKIPLQSIKAGIEQMQALFGRSQII----R 328 Query: 355 GGRIYVDYAHTSNSLEM-----ILKNIRTITSGRIIVVFG 389 G Y+ + +N M + NIR SG+ I V Sbjct: 329 GPVTYLLDCYNANPDSMNAGLALCANIR--VSGKKIYVLA 366 >gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium dentium Bd1] gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium dentium Bd1] Length = 480 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 29/156 (18%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P + +TGT+GK+S ++ GL++ +G + KA Sbjct: 103 PARWIGITGTNGKTSTTEMTSEMLTACGLTAPAVG--------------------NIGKA 142 Query: 174 LSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 +S+ + V VE SS L H D + L + TN+ DH+D+H Y K + Sbjct: 143 VSHAAVDPANDVLCVELSSFQL--HFTDSLALDGAAITNIADDHLDWHGGIDNYAADKAK 200 Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266 +F + S A++Y ADD E+ +RA A GCR Sbjct: 201 VFH----RASKALVYNADDIRVTELAERAETAEGCR 232 >gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9215] Length = 457 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 53/336 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR +F+AI G DGH FIP+ + +G +++V+ + SN P Sbjct: 31 ISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKGVKSVVIKKG-----MQRLLPSNFPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 V++T + A K I+A+TG+ GK++ + + + G ++F Sbjct: 86 WAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG TI + ++++ + +G+ + L ++ I +I Sbjct: 146 EIGVGLTILATDIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 TN+G HI +++ +AK + + L P E II A+D + ++ +K + Sbjct: 190 ----TNIGTAHIGLLGSKKNITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKESWKGRV 244 Query: 264 -GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++L++ Q + F + +N + TI +E F+ L G N L A + Sbjct: 245 IKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE--ISLEGFHNASNFLFAYAV 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +GID A +F+FV S GGR Sbjct: 303 SKELGIDFASF-----------NKFDFV---SFGGR 324 >gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuG_Q212] Length = 446 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +F+A+ G D + FI +A QGA VV+ A +++ P+ Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNRA---------VKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H +V ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRPLAHSR--RIIS 236 Query: 270 VG 271 G Sbjct: 237 FG 238 >gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2 ,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 473 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 32/238 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F A G + DGH + +A+ GA A++ + + P +VV Sbjct: 34 DSREVAPGSLFAAFAGERVDGHDYARRAVEAGAAAVLAARPVGV-----------PAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ L A + + ++ +TG++GK+S + Q+ QR G + + G Sbjct: 83 EDVVGALGALARAVVERLGTTVVGLTGSAGKTSTKDLIAQLLQRKGPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLG 213 + +N + P A A + H+ +E + G+ R D G N+G Sbjct: 136 -SLNNEIGLPVTALTATAET-------EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVG 187 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 H+ +++A AK L E+LP++ A++ ADD + + R RVL G Sbjct: 188 SAHLGEFGSREAIAQAKGELV-EVLPEDGCAVLNADDPLVRAMASRTR---ARVLLFG 241 >gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755] Length = 464 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 9/107 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R +F + G K D H ++ +AI QG A+VV ++ N P Sbjct: 28 ISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIEQGCVALVVERELAV---------NVPQ 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++V++TR L A L + +A+TG+SGK++V +I Q+ Sbjct: 79 IIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4] Length = 486 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG I TN+ +H+D++ + + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTLAIV---TNIDPEHLDHYGSFEKVQDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 +P A + D + ++ R + R+++ G+ + I + I + T Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263 Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + G+D D P+PG + NAL A G+ + I A + + + V RF Sbjct: 264 VIRGRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323 Query: 348 FVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 VG G + V DY H ++ +L R R+I V Sbjct: 324 RVGEIKICDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366 >gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. FW1012B] Length = 466 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 16/137 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V DSR + G +FV + G + DGH F +A+ +GA A++ A + Sbjct: 26 IEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEKGAAAVLADRPL------AGLPEG 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 TP+L+V +T L A + ++AV+G++GK++V I + +GP Sbjct: 80 TPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVKELTAAILGK-------VGP 132 Query: 150 TS-TISSFAQDNRLTTP 165 T+ +F +NR+ P Sbjct: 133 TAKNYKNF--NNRIGLP 147 >gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces urogenitalis DSM 15434] Length = 497 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 48/362 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ +V +DSR + G +FVAIVG + DGH +PQA A GA A +VS+ +++ A Sbjct: 37 RVTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAGR 96 Query: 89 NT---PILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQI 136 + P+++V +T L A + E +++A+TG+ GK++ +QI Sbjct: 97 DPESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQI 156 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASS 191 + Q + ++SF +N + P + A + + + G H++ S Sbjct: 157 L------AAQAPTVAPVASF--NNEIGLPLTVLRADHTTRYLVLEMGASGSGHIAYLTSI 208 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 LD A + +G H+ + AK + LLP A++ DD Sbjct: 209 APLD----------AAAVLMIGHAHMGGFGSVDGVARAKSEIVTGLLPT-GVAVLNLDDP 257 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFL-FPL 306 S + + A RVL+ G + A+ +Q + + + G + L L Sbjct: 258 RSAAMRELAPG---RVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGL 314 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHT 365 PG V NAL AAGL +A G+D + VL+ L + P R + GG + +D ++ Sbjct: 315 PGRHNVTNALAAAGLALAAGLDPSQVLQALAGAGLESPHRMDV---RECGGVLVIDDSYN 371 Query: 366 SN 367 +N Sbjct: 372 AN 373 >gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gramella forsetii KT0803] Length = 430 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 73/303 (24%), Positives = 127/303 (41%), Gaps = 51/303 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +D+R+I+ +F A+ G +G+ F +A+ QGA +VV D +++ Sbjct: 16 VDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVV-------DDKKFVKNKEHY 68 Query: 93 LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V N + L A R Y P ILA+TG++GK++ V + R Sbjct: 69 ILVQNVLESLQKLAIFHRKYLGIP--ILAITGSNGKTTTKELVHSVLLR---------KF 117 Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGIKLIA- 206 TI++ +N + P L+ LS T + ++H L+ ++ + IA Sbjct: 118 KTIATKGNLNNHIGVP--------LTLLSMDDHTEFGIVEMGANHPLE---IEFLCTIAN 166 Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G TN G+ H++ + + AK L++ L + + DD ++R H Sbjct: 167 PDYGYITNFGKAHLEGFGSLEGVVKAKTELYKNLQERHKLIFLNIDDE-----VQRKHEN 221 Query: 264 GCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 S G + + L + N Q + + DF L GE+ N +AA LC Sbjct: 222 YNHTFSFGESNEADVQLSYQSGLANAQ-----LNYNNTDFKSKLTGEYNAKN--MAAALC 274 Query: 323 IAI 325 I + Sbjct: 275 IGL 277 >gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str. 1873] gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str. 1873] Length = 458 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 42/317 (13%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQIC 137 ++A I + P LV + + ++ + G H NI A++GT GK++ S + I Sbjct: 75 YTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGHKYNI-AISGTHGKTTTTSMLSHIT 133 Query: 138 QRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + L PT + N S ++ +A Y +S L Sbjct: 134 LSANLD-----PTILVGGNLDVINGNVRVGNSDYFVTEACEYKASF-------------L 175 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + GI L N+ DH+D+++ N ++ F +L+PK+ I+ ADD Sbjct: 176 KFYPYIGIIL------NIEADHLDFYKDINDIQNTFLK-FAKLIPKDGFLIVNADDERCL 228 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPLPGEFQ 311 ++ K C +++ G + K + N + T V K F +PG Sbjct: 229 DISKEV---DCNIITFGINNGEVRAKNIE--FNNGRPTFDVYRNNTKLFSLTLNVPGNHN 283 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + +AL + +++ +D+ ++E L + RFE G G + DYAH ++ Sbjct: 284 ILDALASISASLSLKVDTNSIIEGLSTFYGAHRRFEIKGK-LNGITVVDDYAHHPTEIKA 342 Query: 372 ILKNIRTITSGRIIVVF 388 L + +I +F Sbjct: 343 ALNAAKNFPHNKIFCIF 359 >gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Boryong] Length = 471 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 57/353 (16%) Query: 33 VSSDSRHIQAGWIFVAIVG-NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V +S+ IQ G +F+A+ N DGH F+ A+A+GA+A++VS L D +A N Sbjct: 29 VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIVS---KLIDNNA----NDK 81 Query: 92 ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIG 148 I++V+NT LS A+ R + +TG+ GK+S + ++ S++ Sbjct: 82 IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKV-----FSTYYKTFA 136 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++ PI A+ LS+ SS G Q + + L Sbjct: 137 SRKNFNNLLGMLLNLASVPINTEYAIFELST----------SSPGGLQKLVKILPLNIAV 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267 TN+ H ++ + + AK +F L+ K A+I +D + + ++ + G V Sbjct: 187 LTNINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFYTKQLEYINKLGINNV 245 Query: 268 LSVGYQGKFIHLKKVCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYN---AL 316 + G H + I N K + IS G D+ F + G Q +N + Sbjct: 246 FTFG-----THQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVM 300 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 + + +C I+ V E + L GR G+IY+ H+++S Sbjct: 301 LVSNIC---KINLNKVTEVINTLRNYEGR----------GKIYLLNFHSNSSF 340 >gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella suis ATCC 23445] Length = 481 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 83/374 (22%), Positives = 157/374 (41%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A A +VV+ + L F T Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAADAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis TAC125] Length = 460 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 98/489 (20%), Positives = 193/489 (39%), Gaps = 82/489 (16%) Query: 6 LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65 +I DF L N L+ Q + + +++D+R I +G +F+A+ G DGH FI QA Sbjct: 1 MIPMDFDWLANVLAT-DYQGDNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFIAQAKQ 59 Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 GA ++V + + P +V +TR L + + + +A+TG+ G Sbjct: 60 NGAIGVIVQHKVDV---------DIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSVG 110 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ V+++C + + S +T +F +N + P +T + Sbjct: 111 KTT----VKEMC--AAILSVHGDVLATKGNF--NNDIGVP----------------LTLL 146 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLG-----------------RDHIDYHQTQQAYFN 228 +E QHR I+L A + H++ + Sbjct: 147 RLEP------QHRFAVIELGANHLGEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAK 200 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHN 287 AK +F+ L + AI+ D +S+ + + G +V K I + + N Sbjct: 201 AKGEIFDG-LKDDGVAIVNCDSEFSQYWLDKLD--GRKVTRFSSSEKLDIWAENISLDEN 257 Query: 288 -KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T+ + LPG+ + NAL+AA L + + L + V GR Sbjct: 258 ARASFTLCTKNAQIPVKLALPGKHNISNALIAAALTSEFDVTLEDIANALATMGDVKGRV 317 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRPIMGK 404 + + + Y S++ + + + RI+ + G G+ + +G+ Sbjct: 318 NLINVSDLLTVVDDTYNANVKSVKAAIDLLSDMQGHRILALGDMGELGEEARQYHQEVGE 377 Query: 405 IAL-----DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLN 457 AL +L + +++ A ++G+P F + ++ I+T+I+ ++ Sbjct: 378 YALEQGINELFTLGVLSR-----------YASDVYGLPNRHFSNREQMLQQIQTSIKKVD 426 Query: 458 KQDVLVVAG 466 K+ +VV G Sbjct: 427 KKTTIVVKG 435 >gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] Length = 456 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 12 PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P ++L++ P+ R + + VS+DSR I G +FVA+ G + DGH ++ Q A+G Sbjct: 4 PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126 A +V + P LVV +TRK L+ L A G + AVTG+SGK Sbjct: 63 AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 127 SSVASFVQQICQRSG 141 ++V + I + G Sbjct: 115 TTVKEMLASILRTRG 129 >gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter aphrophilus NJ8700] Length = 459 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 13/118 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + VS+DSR + +F A+ G D H ++ +A+ QG A VV Sbjct: 22 ELTVENVSTDSRQSISKGLFFALKGEHFDAHHYLDKAVEQGCIAAVVER----------- 70 Query: 87 RSNTPI--LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 ++N+PI LVV +TR L A L K +A+TG+SGK+++ I Q+S + Sbjct: 71 QTNSPIAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSSGKTTIKEMTAAILQQSAV 128 >gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum H-6-12] gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum H-6-12] Length = 464 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 23/189 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+DY++ + + +++ E++ P++ ++ D ++++ + + + + Sbjct: 178 TNIDNDHLDYYENIENIKSTFLKVIEKV-PEDGYVLLNLDCKNIRDIIGKIKDK--KYYT 234 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAA 319 G+ A + ++ G +FD F +PG + N+L A Sbjct: 235 YGFSN---------ADFTADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAI 285 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G+ +G+D ++ LEK H V R +F G ++ DY H + L+ +R + Sbjct: 286 GISYILGLDFEQTIKALEKFHGVQRRIQFKGVIENDVLVFDDYGHHPTEILATLETLR-L 344 Query: 380 TSGRIIVVF 388 + R++VVF Sbjct: 345 YNRRLVVVF 353 >gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 479 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 85/334 (25%), Positives = 136/334 (40%), Gaps = 48/334 (14%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA+A+VVSSA + I VV L R YG +AV GT G Sbjct: 77 QGADAVVVSSAVQADNPEVQAAREYRIPVVRRAEMLAELMRFR-YG------IAVAGTHG 129 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ S V + GL PT I RL + + + YL ++ Sbjct: 130 KTTTTSLVASVLAEGGLD-----PTYVIG-----GRLNSSASHARLGSGRYLVAE----- 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKES 242 + E+ + L +K + TN+ DH+ +T F+ F+E L P Sbjct: 175 ADESDASFLH------LKPMMAVVTNIDADHL---ETYGGDFDQLRHTFDEFLHHLPFYG 225 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 A++ DD +++ +V S G+ + L+ V + ++ +V D + Sbjct: 226 LAVLCHDDPVLRDL---GPEIARQVRSYGF-AEDADLRAVDIEQSGRRTRFTV--VDGEA 279 Query: 303 LFP----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357 FP LPG V NAL A + + +D A + L++ + RF+ GT G R Sbjct: 280 TFPVEVNLPGRHNVQNALAAIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDAR 339 Query: 358 IYV--DYAHTSNSLEMILKNIRTITSG-RIIVVF 388 + + DY H + L+ +R G R++VVF Sbjct: 340 VTLVDDYGHHPREIAATLRAVRDGWPGRRVLVVF 373 >gi|292655246|ref|YP_003535143.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase / dihydropteroate synthase [Haloferax volcanii DS2] gi|291370736|gb|ADE02963.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase / dihydropteroate synthase [Haloferax volcanii DS2] Length = 838 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 131/344 (38%), Gaps = 53/344 (15%) Query: 120 VTGTSGKSSVASFVQQICQRSG-------------------LSSFQIGPTSTISSFAQD- 159 V G++GK S A V + + SG + +I P S +S+F + Sbjct: 44 VAGSNGKGSTARMVDAMLRESGAHVGLYTSPHFDDVRERVRVDGRKI-PKSALSAFVAEA 102 Query: 160 -----NRLTTPSPIYL-----AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 R P+ A AL Y GV V+V G + + +A + Sbjct: 103 KPYLVERAADGEPLTFFETVTALALWYFDRAGV-DVAVLEVGMGGELDATSAVDPVASAV 161 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ +H A AK + + P ++P + + E + VL+ Sbjct: 162 TNVSLEHTAVLGDTVAEI-AKTKA--AVAPADAPLVT----GTTGEALSVIREEAGDVLT 214 Query: 270 VGYQGKFIHLKKVCAI-----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322 VG + H + VT+ + + D PL G +Q NA +A L Sbjct: 215 VGDADADSDADVRVSYGGRVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQ 274 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 + ID+ + L H PGRFE +GT + +D AH ++ + + Sbjct: 275 VRPDIDAEAIHRGLRNAH-WPGRFEVMGTEP---TVVLDGAHNPDACAQVATVLDEFDYD 330 Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426 + +V+G D+D G+ ++G + ++A + D R EDPE Sbjct: 331 DLHLVYGAMHDKDHGE--MVGALP-EVASVVTCKADISRGEDPE 371 >gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC 15579] gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC 15579] Length = 458 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 70/327 (21%), Positives = 129/327 (39%), Gaps = 61/327 (18%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + N+ A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNV-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G N+ DH+DY++ NA + F +L+PK+ I Y +D Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLIAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA----IHNKQQVTISVEGKDFD 301 + ++K A+ C V++ G I +K C + NKQ++ F Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGSFDVVKNKQKL--------FS 274 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 +PG+ + N+L + + +A + + ++E +E RFE G + I D Sbjct: 275 VKLNVPGKHNILNSLASICIGLASNMKNEDIIEGIESFFGTHRRFELKGCKNNITVI-DD 333 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388 YAH + L + ++ VF Sbjct: 334 YAHHPTEISATLDAAKKYPHNKMFCVF 360 >gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseoaurantiacus M045] gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces griseoaurantiacus M045] Length = 462 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 36/225 (16%) Query: 220 HQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKR------------AHNAG 264 H A + FE + P ++ AD ++E+ +R A +A Sbjct: 190 HHANYASMDEIYESFETFAGRVVPGGTLVVSADHEGARELTRRLAKTVRTVTYGAAEDAD 249 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 RVLSV G +VT+ ++G F +PG +NA+ A A Sbjct: 250 VRVLSVVPHGL------------TSEVTVELDGAPLTFTVSVPGRHYAHNAVAALVAGRA 297 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 +GI +A + L V R + G GG VD YAH + L+ +R+ T GR Sbjct: 298 LGIPAAELAPALAAYTGVKRRLQLKG--EAGGVQVVDSYAHHPTEMTADLEAMRSGTRGR 355 Query: 384 IIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 I+VVF ++ GK MG+ AL LAD ++V D P EDP Sbjct: 356 ILVVFQPHLFSRTQELGKE--MGE-ALALADASVVLDIYPAREDP 397 >gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 469 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 151/375 (40%), Gaps = 62/375 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G + DGH + A+ GA A++ AT P ++V Sbjct: 34 DSRKAEPGALFVALPGEQADGHDYALSAVKAGAAAVL-----------ATRPVGVPAILV 82 Query: 96 DNTRKFLSLFASRLYGKH-------PENILAVTGTSGKSSVASFVQQICQRSGL-----S 143 D+ L+ F RL G+H I+A+TG++GK+S + Q+ +G Sbjct: 83 DD---VLAAF-GRL-GRHLVAHTLVDTKIVAITGSAGKTSTKDLIAQLLPAAGRVVATPE 137 Query: 144 SF--QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 SF +IG TIS + PS YL + + ++G+ H+ D R+ Sbjct: 138 SFNNEIGLPLTIS-------MADPSTDYL---VLEMGARGIGHIR--------DLTRIAP 179 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + TN+G HI + AK + E LP A++ ADD V+ A Sbjct: 180 PHI--SVVTNVGTAHIGEFGGRDKIAVAKGEIVEA-LPASGLAVLNADDPL---VLAMAA 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 RV S G + + + T++ L G QV N+L AA Sbjct: 234 RTTARVSSFGLSDEATVRATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSNSLAAA 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 + G+ A + + L R+ + G V+ A+ +N S+ L+ + Sbjct: 294 AVAREAGLSVADIADLLSA-ATARSRWRMEVSARADGVTVVNDAYNANPDSMRSSLEALA 352 Query: 378 TITSG---RIIVVFG 389 T+ G R I V G Sbjct: 353 TMARGPEQRAIAVLG 367 >gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes J139] gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes J139] gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL001PA1] gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL082PA2] gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL110PA3] gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL110PA4] gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL060PA1] gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL103PA1] Length = 471 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRAVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGEMVH 415 >gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. 83/13] gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13] gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella sp. NF 2653] Length = 481 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acetobacter pomorum DM001] Length = 461 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 150/366 (40%), Gaps = 32/366 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S D+R + G +F+A+ G+ DGH I A+ +GA A++ SA L D Sbjct: 26 VTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEKGAAAVLAHSAEGLTDPR------ 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 IL+V +T L A + ++AVTG+ GK++ ++ SGL+ Sbjct: 80 --ILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKTTTKEMLRLCLAPSGLTH----- 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + +N P+ LA+ L ++ ++ + + L ++ ++ Sbjct: 133 ---AAEASYNNHWGV--PLTLAR-LPREAAFCISEIGMNHPGEILPLAKM--VQPDVAVI 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 T +G H+ + + A K + LP AI+ DDA+ A VL Sbjct: 185 TTIGSAHLGHMGSLDAIAAEKASIITA-LPAGGIAIM-PDDAHGTPFFTAAAVKAQAVLW 242 Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 V Q HL + + +S+ GK F+ P PG NA+VA C A+G Sbjct: 243 PCGVNPQST-AHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARNAVVALAACAALG 301 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGR 383 D A L PG+ T GG I + Y ++ S+ L +R I + R Sbjct: 302 ADVAKAAAALAAFR--PGKGRGALTKIAGGAITLLDESYNASAASIRAALDVVRHIPATR 359 Query: 384 IIVVFG 389 I V G Sbjct: 360 RIAVLG 365 >gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8] gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera mobilis JLW8] Length = 452 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 46/257 (17%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + LFA Y ++A+TG +GK++V + V ++C+ +GL + G Sbjct: 100 VELFAQ--YRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGL--------- 148 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 P+ L LS + +E SS L+ + + A + NL DH+D + Sbjct: 149 -----PV-----LDTLSMETPDVYVLELSSFQLETT--NSLLADAATMLNLSEDHMDRYD 196 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR------VLSVGYQGK 275 + Q+Y AK +F ++ DDA+S +M RA A V Y K Sbjct: 197 SMQSYAVAKAHIFYH----AKLQVLNRDDAWSL-MMARAKLAQVTFGLDDVVAEQDYGIK 251 Query: 276 FIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 ++ + C H+ + +D + G NAL A LC IG+D A ++ Sbjct: 252 QVNGETWLSCGTHDLMNI------RDLK----IAGLHNASNALAAMALCRGIGLDFAPII 301 Query: 334 EHLEKLHVVPGRFEFVG 350 + L +P R E+V Sbjct: 302 QTLYNFKGLPHRVEWVA 318 >gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium rimae ATCC 49626] Length = 478 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 30/389 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 EV DSR + G +FVA G K DG+ +I A+ GA + S + R + Sbjct: 27 GEVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDA 86 Query: 91 PILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +L D+ +FL A H + ++AVTG+ GK++ + R+G+++ + Sbjct: 87 TLLRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDML-----RAGIATQR- 140 Query: 148 GPTSTISSFAQDNRLTTPSPIYLA--KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++ +N + P I A A + G+ H G + Sbjct: 141 --RVHATAGNHNNLIGLPMTILSAPKDAEVLVCECGMNH-------KGEILRLTRCCRPT 191 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESPAIIY--ADDAYSKEVMKRAH 261 TN+G HI +++ AK + E E P +I D S K A Sbjct: 192 IAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFAR 251 Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318 G V+ VG + G + + V ++ +G F +PG V +AL+A Sbjct: 252 PKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMA 311 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI- 376 +G+D + L+ + + R + G RI D Y + +S+ L + Sbjct: 312 LEAITLLGLDRDMALDAIATMPPTRMRLSVLHAVC-GARIIDDSYNASPSSMAAALDVLS 370 Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 R T GR I + G G+ Q ++ + G + Sbjct: 371 RMPTRGRRIAILGEIGELGQEEKRLHGYV 399 >gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato Max13] gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato K40] gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato T1] Length = 456 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 12 PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P ++L++ P+ R + + VS+DSR I G +FVA+ G + DGH ++ Q A+G Sbjct: 4 PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQVAAKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126 A +V + P LVV +TRK L+ L A G + AVTG+SGK Sbjct: 63 AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 127 SSVASFVQQICQRSG 141 ++V + I + G Sbjct: 115 TTVKEMLASILRTRG 129 >gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155] gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185] gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195] gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223] gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183] gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175] gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155] gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185] gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195] gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223] gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183] gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175] gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678] Length = 488 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 47/274 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +A+ GT GK++ S + + ++G +F IG ++S + RL T S +A+A Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQAGRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S+L Q + V TN+ DH+D + + Sbjct: 180 DASFLHLQPMVSV-----------------------VTNIEADHMDTYGGDFEKLKSTFV 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-- 290 F LP A++ DDA +E+M R G ++++ G+ V A++ QQ Sbjct: 217 DFLHNLPFYGVAVVCIDDAVVREIMPRI---GRQLVTYGFSDD----ADVQALNFSQQGH 269 Query: 291 ---VTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ +GK D D + LPG+ V NAL A + ID + + + L + + RF Sbjct: 270 QCRFTVRRKGKADLDLVLNLPGQHNVLNALAAIAVATEDEIDDSAITQALVEFQGIGRRF 329 Query: 347 EFVG--TNSRGGRIYV-DYAHTSNSLEMILKNIR 377 + +G +G + V DY H + + +K R Sbjct: 330 QHLGKFATPKGEVMLVDDYGHHPSEVAATIKAAR 363 >gi|168177452|ref|ZP_02612116.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916] gi|182670399|gb|EDT82373.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916] Length = 873 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 87/359 (24%), Positives = 148/359 (41%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 ISGKKVGMTTTGGIYINNKCINNGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560 Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ D + + AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617 Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 R + + L + G I+LKK+ NK + I+V Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+GID + + LE PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGIDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844 >gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Nakamurella multipartita DSM 44233] Length = 510 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 49/378 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V D+R I+ G +FVA+ G + DGH F A A GA A++ SA + + Sbjct: 26 VSSVEFDTRRIRPGALFVALRGERVDGHDFAATAAAAGAVAVL---------GSAPVSAP 76 Query: 90 TPILVV----DNTRKFLSLFA------SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P+L V DN +L A + L +H ++ VTG+SGK+S + + + Sbjct: 77 LPLLQVPDRPDNAGVLDALAALARASVTALVREHGLQVVGVTGSSGKTSTKDLIAAVLR- 135 Query: 140 SGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + GP I+ SF +N L P Y A ++ V +S + H Sbjct: 136 ---AVPGTGPERVIAPPESF--NNELGHP---YTALRADESTAFLVLELSARGAGHIAAL 187 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADD 250 R+ +++ G+ N+G H+ + +A AK L + L P + AI+ ADD Sbjct: 188 ARVAPLRI--GAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQPLTGGVAILNADD 245 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTISVEGKDFDFLFPLP 307 A V A V+ VG G ++ ++ + T+ + Sbjct: 246 AL---VAAMAELTAAEVVMVGT-GAAAQVRATDVGQDDADRARFTLVTPEGSAPVTLRVV 301 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G Q+ NAL AA + A+G+ + L + R+ T G ++ A+ +N Sbjct: 302 GAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPA-SRWRMEVTELANGVTLINDAYNAN 360 Query: 368 --SLEMILKNIRTITSGR 383 S++ L ++ TI GR Sbjct: 361 PHSMKAALHSLSTIGRGR 378 >gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str. Eklund] gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str. Eklund] Length = 458 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 77/340 (22%), Positives = 132/340 (38%), Gaps = 51/340 (15%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPEN 116 +GAE + +L++ ++A I SN P LV ++ + G H N Sbjct: 54 KGAEIYIGHDGNNLKNVDLVVYTAAIPSNNPELVKARELNIPTMDRAEFLGHVMQGHKYN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + A++GT GK++ S + I + L PT + N S ++ +A Sbjct: 114 V-AISGTHGKTTTTSMLSHITLSANLD-----PTILVGGNLDVINGNVRVGNSEYFVTEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y +S L + GI L N+ DH+D+++ N ++ Sbjct: 168 CEYKASF-------------LKFYPYVGIIL------NIEADHLDFYKDINDIQNTFLK- 207 Query: 234 FEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 F +L+P + I+ ADD A SKEV C V++ G + K + + Sbjct: 208 FAKLIPSDGFLIVNADDERCIAVSKEV-------DCNVITFGIDNGEVRAKNIVFTNGHP 260 Query: 290 QVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + E K F +PG + +AL + +++ + ++E L + RFE Sbjct: 261 TFDVCKNEEKLFTLTLNVPGTHNILDALASISSALSLNVPVNSIIEGLSTFNGAHRRFEI 320 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G G + DYAH ++ L + RI VF Sbjct: 321 KGK-VDGITVVDDYAHHPTEIKAALNAAKNFPHKRIFCVF 359 >gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] Length = 492 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 34/169 (20%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA+ + K + I AVTGT+GKS+V +F QI Q++G+ +F G T S A Sbjct: 118 FAAEAFPKAVK-IAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMF 176 Query: 165 PS--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------NLGRD 215 PS P Y L E SS+ L+ + GSF+ NL D Sbjct: 177 PSDDPPYQVTVL-------------EVSSYQLE---------LPGSFSPSVGVILNLSPD 214 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 H++ H++ + Y K RLFE + + I + D+ K K +N+G Sbjct: 215 HLERHKSMENYGETKCRLFERMDSSKLSIIPHGDEFLRKVAYK--YNSG 261 >gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3 str. Alaska E43] gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str. Alaska E43] Length = 460 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 68/349 (19%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116 GA+ + S +++D ++A I N P L+ +N ++ F + H N Sbjct: 54 SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIDLMNRAEFLGNIMKGHKYN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162 + A++G GK++ S + I ++ L +F+IG + + Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T + Y LS+ GV N+ DH+DY++ Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 F +L+P + I Y D+ KE++ +A C LS G++ + + + Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYIGDSRVKEILSKAK---CNTLSYGFENADVTARNI 253 Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + K + V K FD PGE + NAL + + + ++ ++ L + Sbjct: 254 -TFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE+ G G + DYAH ++ L + I + VF Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360 >gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium nitrogenifigens DSM 19370] Length = 474 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 +N +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KNTVAVAGTHGKTTTTSMVACLLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + A F Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFD-RVKAAFVEF 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 E +P A++ D + ++ + RV++ G+ + + + V + + T Sbjct: 206 IENVPFYGAAMLCIDHPVVQAIIPMVRDR--RVITYGFSAQSDVRGEAVIPVPGGNRFTA 263 Query: 294 SVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +D D + P+PG V NAL A + +G+ ++ + K V RF Sbjct: 264 VLRQRDGTFHRIEDIVLPMPGRHNVQNALAAIAVAREMGVADDVIRDGFAKFGGVKRRFT 323 Query: 348 FVG-TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 VG GG + V DY H + +L R GR+I V Sbjct: 324 KVGEIEVDGGLVTVIDDYGHHPVEIRAVLAAAREGARGRVIAV 366 >gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 456 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR IQ G +FVA+ G + DGH ++ Q A+GA +V ++ P Sbjct: 28 VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ L A + + A+TG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129 >gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 456 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR IQ G +FVA+ G + DGH ++ Q A+GA +V ++ P Sbjct: 28 VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ L A + + A+TG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129 >gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia conorii str. Malish 7] Length = 449 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 49/373 (13%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHN 262 TN+ H+++ + + AK +F K A+I AD + Y+K + + Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFP-LPGEF-QVYNALVA 318 + + S G K + + + +QV + + K D P +P F + Y ++ Sbjct: 234 SITDIHSFGRSAK-TSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL- 291 Query: 319 AGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376 L I I G D + HL + GR E + N + R+ DY + S S++ L+ + Sbjct: 292 --LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNASPQSMKAALEYL 347 Query: 377 RTITSGRIIVVFG 389 + + + + G Sbjct: 348 KQVPAENKTAIIG 360 >gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Asticcacaulis biprosthecum C19] Length = 464 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 88/345 (25%), Positives = 142/345 (41%), Gaps = 39/345 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +Q G IF+A+ G + DGH F+ QA A GA V L+V Sbjct: 38 DSRALQPGDIFLALQGAR-DGHDFVAQAFASGAVLAVTRRPIE----------GGACLLV 86 Query: 96 DNTRKFLSLFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 + +K L A + P+ VTG+ GK+SV V Q Q++G + S I Sbjct: 87 PDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSVTQMVMQGLQQAGRAH------SAIK 140 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHV-SVEASSHGLDQHRLDGIKLIAGSF 209 SF +N + P + LA+ + G+ H + S + H + Sbjct: 141 SF--NNHIGVP--LTLARMPADTERAVFEIGMNHADEITPLSEFVAPHAV--------VI 188 Query: 210 TNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T +G H + + + AK +F+ L+P AI+ AD+ + + +A +G V Sbjct: 189 TTVGAVHTENFPDGEAGVAAAKAEIFDGLVPG-GLAILNADNRWFDHLSTKARGSGALVA 247 Query: 269 SVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G G L + ++ V G+D F G Q NAL A + A+ + Sbjct: 248 AFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALLMLEALDV 307 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM 371 D L LE + GR + +GG + +D ++ +N + M Sbjct: 308 DLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSM 352 >gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 15/120 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR I G +F+AI G + DGH ++P AQGA A +V + + D ++ P +V Sbjct: 34 TDSRQIVEGSVFIAIAGERVDGHDYVPHVGAQGAVAAIVD--HEIAD------ADVPQIV 85 Query: 95 VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 V++T L L A R G P ++ +TG+ GK++ ++ + G + +G Sbjct: 86 VEDTVLALGLLAKHNIERRRALGT-PFTVVGITGSVGKTTTKDLMKALLSHMGSTVAPVG 144 >gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 456 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR IQ G +FVA+ G + DGH ++ Q A+GA +V ++ P Sbjct: 28 VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ L A + + A+TG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129 >gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 455 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 36/343 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S D+R IQ G +FV G + +GH F+ QA +GA A + Q Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGAGASL------WQKDEPNPPEG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+L VD+ L A +H + +TG++GK+S + I + F++ Sbjct: 78 IPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTS----TKDILAGTLAPFFKV-- 131 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 TI +F +N+L P I L V + + S G + + Sbjct: 132 QKTIGNF--NNQLGLPITI-----LQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTVI 184 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKE-VMKRAHNAGCRV 267 TN+G H+ ++ AK + + + P + Y D+ +E V K H Sbjct: 185 TNIGEAHMQDLGSRAGIAQAKFEIIQGMQP--DGLLFYDGDEPLLQELVAKEMH---LNA 239 Query: 268 LSVGYQ-GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 ++ G + ++ + A N T +EG DF + G+ QV N LVA + Sbjct: 240 VAFGLEPNNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLVAMLISHQ 296 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366 +G+ + + LE + + R + V GTN G ++++ A+ + Sbjct: 297 LGLKNEQIRTSLEHVVLTDMRMQQVQGTN---GALFINDAYNA 336 >gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 456 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR IQ G +FVA+ G + DGH ++ Q A+GA +V ++ P Sbjct: 28 VSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVEREVQ--------GASLPQ 79 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ L A + + A+TG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLASILRTRG 129 >gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus aciditrophicus SB] Length = 475 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 31/368 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIR 87 I VS+D+R + AG +++ + G DGH F+ A+ +GA ++V A+ L+ S Sbjct: 31 IRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVKKGAGGVLVDVHHAFILETGSKKTD 90 Query: 88 SNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ILV D + L+ F R G+ ++A+TG+SGK++ I +++ Sbjct: 91 GCLKILVDDTLKALGDLARFWRRAVGR---PVIAITGSSGKTTTKEMTAAILEQT----- 142 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S + + N L P+ L L + V + ++ G + + + Sbjct: 143 ----FSVLKTEGNLNNL-IGLPLTL---LRMHRGHDLALVELGTNARGEIKRLTEIAEPD 194 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G H++ +T + K L+ +PK A+ ADD + ++R+ Sbjct: 195 IGLVTNIGPAHLEGLKTLEIIREEKGDLYGT-MPKSGLAVFNADDE-AMAPLRRSWQGKM 252 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + + + Q T++ + G +YNAL AA L A Sbjct: 253 LTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMHNIYNALAAAALSRAA 312 Query: 326 GIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITS 381 GI + + L H V RFE F+ G VD + +N S+ LK I+T+ Sbjct: 313 GIGINEISQGLRNFHPVAARFEVHFLPN----GAFLVDDTYNANPASVREALKTIQTLKG 368 Query: 382 G-RIIVVF 388 R +VV Sbjct: 369 NHRSVVVL 376 >gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 Query: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 374 KNIRTITSGRIIVVFG 389 I GR I V G Sbjct: 361 SQISPHGEGRRIAVLG 376 >gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. B076] gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. glycinea str. race 4] Length = 456 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 13/127 (10%) Query: 20 IFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 + P+ R + + VS+DSR IQ G +FVA+ G + DGH ++ Q A+GA +V Sbjct: 11 VVPLDARLVAGDCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKGAVGALVER 70 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 ++ P LVV +TRK L+ L A + + A+TG+SGK++V + Sbjct: 71 EVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEMLA 122 Query: 135 QICQRSG 141 I + G Sbjct: 123 SILRTRG 129 >gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desulfovibrio vulgaris str. Hildenborough] gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris RCH1] Length = 478 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91 V SDSR + G +FV I G + DGH F + QGA ++ F+ S + Sbjct: 29 VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAER----DPFNGECPSADVT 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 I+VVD++ K L A+ + ++ VTGT+GK++V + Q+ Sbjct: 85 IMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQV 129 >gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS] gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS] Length = 855 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 146/365 (40%), Gaps = 48/365 (13%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AVTGT+GK++ A + + SGL + G T+T + D R Sbjct: 459 TMFAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRT---GMTNTDGVYV-DGRQ 512 Query: 163 TTPSPIYLAK-ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--D 218 T K A + L V E + G+ + L + TN+G DH+ + Sbjct: 513 TDSGDCSGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLN 572 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278 Y T + K R+ + + A++ A D V A AGC + + +H Sbjct: 573 YITTVEDLAVLK-RVIVRNVAADGYAVLNAAD-----VNVAAMAAGCPGHVIFFTADRMH 626 Query: 279 LKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGE-------------------FQVYNALVA 318 V A H Q + T+ V D D L G FQV N + + Sbjct: 627 --PVMATHRAQGKRTVYV---DQDTLVAAEGSWRERIPLRDVPITRNGTIGFQVDNVMAS 681 Query: 319 AGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+G+D + L VPGRF + + RG + DY H ++++ ++ Sbjct: 682 VAAAWAVGLDWDTIRSGLASFMNDAAGVPGRFNVM--DYRGATVIADYGHNTDAMRALVS 739 Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433 + T+ + R +V+ G G RD R + D+ + D R ++ A + Sbjct: 740 AVDTMPANKRSVVISGAGDRRDSDIRDQTAILGEAFDDVILYQDAAQRGRADGEVMALLR 799 Query: 434 HGIPG 438 G+ G Sbjct: 800 QGLQG 804 >gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseobacter sp. CCS2] Length = 477 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 84/363 (23%), Positives = 143/363 (39%), Gaps = 60/363 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +E VS D+R I G +FVA+ + DGH F+ QA+ QGA A +V+ A Sbjct: 20 QEWDAQGVSIDTRTIAQGDLFVAL-KDVRDGHEFVAQALDQGAAAALVTH------RPAD 72 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL--- 142 + ++ P+L+V + L + I A+TG+ GK+S ++ + ++ G Sbjct: 73 VPADAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKTSTKEMLRAVLEKQGKCHA 132 Query: 143 --SSF--QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 +S+ G T++ D ++ P I LS ++ V ++ A++ Sbjct: 133 AEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEI---TPLSQMTQPHVAMLTTVAAA 189 Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 H SF NL ++ K + + L P A++ D Sbjct: 190 H-------------LASFDNLAGIAVE-----------KASIMDGLEPG-GVAVLNGDIE 224 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 S + A G R + G +K V + ++ S G+++ F +PG Sbjct: 225 TSGILQDHAAKLGARQVLFGETAPDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHF 284 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSL 369 NA+ + A+G D V L+ VP RG R I D A+ SL Sbjct: 285 AMNAVGVLAVAEALGADP--VAAALDIGAWVP-------PAGRGTREVIVTDMANDGESL 335 Query: 370 EMI 372 E++ Sbjct: 336 ELL 338 >gi|294828013|ref|NP_712232.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans serovar Lai str. 56601] gi|293385859|gb|AAN49250.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans serovar Lai str. 56601] Length = 488 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 52/305 (17%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE--------------------------ELL---- 238 TN+ DH+DY+QT++ NA +R E ++L Sbjct: 181 LTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILGFSK 240 Query: 239 ---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQV 291 P E + + + SK+ +K + AG S G K ++ I + Sbjct: 241 YKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGI-----L 295 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + K++ F PGE + NAL A C GI + ++ + + V R E++G+ Sbjct: 296 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLGS 355 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408 + G +Y DY H ++ +++++ + GR +++F R + + + A LD Sbjct: 356 KN-GIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQP--HRYTRTQNLYKEFAESLD 412 Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +I + EDP ++AE+I P I E I T L D LV Sbjct: 413 SGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFTLKSFLKPGDKLVT 472 Query: 465 AGKGH 469 G G+ Sbjct: 473 LGAGN 477 >gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 315 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 24 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 76 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125 >gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 456 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 12 PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P ++L++ P+ R + + VS+DSR I G +FVA+ G + DGH ++ Q A+G Sbjct: 4 PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126 A +V + P LVV +TRK L+ L A G + AVTG+SGK Sbjct: 63 AVGALVEREVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 127 SSVASFVQQICQRSG 141 ++V + I + G Sbjct: 115 TTVKEMLASILRTRG 129 >gi|50955148|ref|YP_062436.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] gi|59798226|sp|Q6AE65|MURC_LEIXX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|50951630|gb|AAT89331.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 464 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 9/182 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRV 267 TN+ DH+D++ + +A+ +A + EE ++ +DD +++V +R A G RV Sbjct: 183 TNVDPDHLDHYGSLEAFEDAFVAFAEE---SAELVVVSSDDPGAQQVTRRLRKAAPGKRV 239 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 L+ G + + ++ + + +S + + +PG NA A L +G Sbjct: 240 LTFG-EAEDADIRVYSIVTDGPVAFALSHDSDVYSACLRVPGRHNAINAAGAFALLTGLG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRII 385 + A L + + RFE GT + G +Y DYAH + L RT+ GRII Sbjct: 299 FEPAASLAAIAEFGGTERRFELHGTVA-GVSVYDDYAHHPTEVAAALSAARTVVGDGRII 357 Query: 386 VV 387 V Sbjct: 358 AV 359 >gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase (murF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine [Treponema pallidum subsp. pallidum SS14] gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Treponema pallidum subsp. pallidum str. Chicago] Length = 459 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 76/349 (21%), Positives = 136/349 (38%), Gaps = 81/349 (23%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSAT 85 R + VS DSR + +F+ + G DGH F+ +A+ +GA A ++ Y + + + Sbjct: 24 RGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWC 83 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSS 144 R + V +T + L AS K P I + +TG+SGK++V + + Sbjct: 84 TRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEMARAV-------- 135 Query: 145 FQIGPTSTISSFAQDNR-LTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 F++ R + TP S I L ++L ++ ++ E L +R Sbjct: 136 -----------FSERYRVVATPGNLNSEIGLPQSLFFVRAEH------EVGIFELGMNRR 178 Query: 200 DGIKLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-------LLPKESPAI 245 ++ +A TN+G H+ TQQA K +F + +P ++ + Sbjct: 179 GEMRTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHSVGFVPDDAYRV 238 Query: 246 IYADDAYSKEVM---------KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 ++ Y + V+ + G R V YQG++I + Sbjct: 239 FLSNIPYGRVVVYDQGGRGLATEVIDEGLRGSRVLYQGRWIRV----------------- 281 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 PLPG NAL L +G+ + + +E++ GR Sbjct: 282 --------PLPGVHNAKNALAVIALAAQVGLPAEEIQRGMERVKPPFGR 322 >gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus vestibularis F0396] Length = 457 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 82/360 (22%), Positives = 146/360 (40%), Gaps = 42/360 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + IN++ DSR I G +F+ + G + DGH FI A GA A ++ ++ A Sbjct: 21 YEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDNGALA-----TFTEKELPA 74 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV D F L A L K +++AVTG++GK++ + I + + Sbjct: 75 ---DQAHILVDDALEAFQKLAAYYLE-KTGVDVIAVTGSNGKTTTKDMIHDILATTYRTY 130 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203 G +N + P Y A + + + V + H D H L + K Sbjct: 131 KTQG--------NYNNEIGLP---YTALHMPDDTEKIVLEM---GQDHMGDIHLLSTLAK 176 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRA 260 T +G H+++ ++ KM++ ++ +P S ++ +D D + + Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQM-QDGMPDGSLLLVPSDPIVDPFLPSNLDVV 235 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 L+V +F K +T S D P+ G++ NA+VAA Sbjct: 236 RFGDGAELTVSELTEF-----------KDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAY 284 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + +G+ +L L L + R E+ + G I D Y ++++IL+ I Sbjct: 285 VAKHLGVTEENILTALANLQLTKNRTEWKKA-ANGADILSDVYNANPTAMKLILETFSAI 343 >gi|301630397|ref|XP_002944308.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Xenopus (Silurana) tropicalis] Length = 576 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 33/158 (20%) Query: 102 LSLFASRLYGKHPEN-----ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153 L L++ L+ H ++ +LAVTGT+GK++V + Q+ Q +G S + IGPT Sbjct: 174 LDLYSQALHALHTQHGYAPVVLAVTGTNGKTTVTALTGQLLQHAGRSVAVAGNIGPT--- 230 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNL 212 L + +++Q + V V E SS LD + G + A NL Sbjct: 231 ---------------LLDTLAARIAAQNLPEVWVLELSSFQLDG--VHGFEPTAAVVLNL 273 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAII 246 +DH+D+H AY AK +F + +L +E PA++ Sbjct: 274 TQDHLDWHGDMAAYGAAKAHIFGQHALMVLNREDPAVM 311 >gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68] gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum NCC2705] gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68] gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA] gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis 157F] Length = 483 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 133/343 (38%), Gaps = 42/343 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + SDSR G +FVAI G + DGH F+ + QGA +V + Sbjct: 24 ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 74 Query: 87 RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140 +S+ P +VV +T L A + E +I+ +TG+ GK++ + + Sbjct: 75 KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 132 Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +GPT + + SF + L + +++ G +H+ A RL Sbjct: 133 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 179 Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + +G H+ +++ AK + + LLP + A++ ADD + V+ Sbjct: 180 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVP 235 Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313 A A VL G Q + V A + + +G +PG V Sbjct: 236 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355 NAL AA + + G+ V L H + P R N G Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338 >gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis 3_1_45B] gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis 3_1_45B] Length = 508 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 20/230 (8%) Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVM 257 + + + N+ DH+D+H + +AY +AK R+F ++ +E P ++ A ++V Sbjct: 205 LNCTSAALLNITEDHLDWHGSIEAYAHAKGRIFAPDTVRVVNREDPLVM----AELEKVD 260 Query: 258 KRAHNAG-CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP-------G 308 R H+A C K L + A H Q + + + + D LF LP G Sbjct: 261 DREHSAARCFTFGATKPQKEGELGLMMAAHASQGYWLGLRDQMEVDVLF-LPEFELLIRG 319 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 NAL A GL GI++ + L P R E V T GR ++D + +N Sbjct: 320 RHNAMNALAALGLITGAGIETRPAIGVLRTYRGEPHRVELVRTIE--GRDFIDDSKGTNV 377 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 + GR I++ G + Q P+ ++ +A A++ D Sbjct: 378 GAVAAAVCGLAAQGRRILILMGGDGKGQDFTPLAKELKGRVAFAALIGRD 427 >gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin opimelate/d-alanyl-d-alanylligase [Calditerrivibrio nitroreducens DSM 19672] gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Calditerrivibrio nitroreducens DSM 19672] Length = 446 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR ++ G IF A G K DGHL+I QAI++GA V++ +N P+ Sbjct: 26 ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITD-------ENYYDANKPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 ++V +T + GK + +TG+ GK+S + + + + Sbjct: 79 VLVKDTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQ 125 >gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Roseovarius nubinhibens ISM] Length = 481 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 49/300 (16%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ VS D+R + G +FVA+ + DGH F+ QA+ +GA A +VS + + Sbjct: 23 QVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQALGKGAGAALVSH------IPEGVAA 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS----- 143 + P+L+V++ L + ++AVTG+ GK+S ++ + R G + Sbjct: 76 DAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKTSTKEMLRTVLARQGRTHAAEA 135 Query: 144 --SFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 + G T++ +D + + P I L+ L+ V V+ A++H Sbjct: 136 SYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEI---APLARLARPHVAMVTTVAAAH-- 190 Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 L+ + I G + R+ K +FE L P A++ AD + Sbjct: 191 ----LEAFENIEG----IARE--------------KAAIFEGLEPG-GIAVVNADLDTTP 227 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + + A AG + G + + HL V ++ + ++G+ F G N Sbjct: 228 ILEEAATRAGASIRRFGTKARDYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMN 287 >gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 476 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +AV GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAVAGTHGKTTTTSMVAALLDAGGIDPTVIN-GGIINSYGSNARLGDSDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG I TN+ +H+D++ + + +A + F Sbjct: 162 ------------VEADESDGSFLRLDGTLAI---VTNIDPEHLDHYGSFEKVQDAFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 +P A + D + ++ R + R+++ G+ + I + I + T Sbjct: 206 VSNVPFYGAAFLCIDHPVVQSILPRIRDR--RLITYGFSAQADIRAVDITPISGGNRFTA 263 Query: 294 SVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +D D P+PG + NAL A G+ + I A + + + V RF Sbjct: 264 VIRSRDGDIRRIENIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFS 323 Query: 348 FVGTNSRG-GRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 VG G G + V DY H ++ +L R R+I V Sbjct: 324 RVGEIKIGDGSVLVIDDYGHHPVEIKAVLSAARESAQQRVIAV 366 >gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 460 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 68/349 (19%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116 GA+ + S +++D ++A I N P L+ +N ++ F + H N Sbjct: 54 SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIDLMNRAEFLGNIMKGHKYN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162 + A++G GK++ S + I ++ L +F+IG + + Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T + Y LS+ GV N+ DH+DY++ Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 F +L+P + I Y D+ KE++ +A C LS G++ + + + Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYIGDSRVKEILYKAK---CNTLSYGFENADVTARNI 253 Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + K + V K FD PGE + NAL + + + ++ ++ L + Sbjct: 254 -TFNEKGCASFDVYKHNNKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE+ G G + DYAH ++ L + I + VF Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360 >gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brucella abortus bv. 3 str. Tulya] gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya] Length = 481 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHLT 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter crescentus CB15] gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Caulobacter crescentus NA1000] Length = 462 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 30/245 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS D+R ++ G +FV +VG + DGH F+PQA+A GA ++ + A + Sbjct: 25 VSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAARAV-----------D 72 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P ++V +T K L + P+ AVTG+ GK+SV ++ + +G + Sbjct: 73 APAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAH---- 128 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAG 207 +++ S+ +N + P+ LA+ + + + V V + +H + L G ++ A Sbjct: 129 --ASVKSY--NNHIGV--PLTLAR-MPRDTERAVFEVGM---NHAGEIVPLSGFVRPHAV 178 Query: 208 SFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + T +G HI+ + + AK + L P A++ AD+ + + A G Sbjct: 179 AITTVGPVHIENFSDGEAGVARAKAEILAGLQPG-GIAVLNADNHWFDFLKGEAEKVGAT 237 Query: 267 VLSVG 271 V S G Sbjct: 238 VWSFG 242 >gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 540 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 12/133 (9%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 LS A + +LA+TGT+GK++ A+ Q+C+R+G ++ IS A + Sbjct: 135 LSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGK---KVAVAGNISPAALEKL 191 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + + LA + +S V +S S + H L+ A + N+ +DH+D+H Sbjct: 192 MNC---LDLADQIVDMSDVWVLELS---SFQLVYTHTLNA---TAATVLNITQDHLDWHG 242 Query: 222 TQQAYFNAKMRLF 234 QAY AK R+F Sbjct: 243 DMQAYAEAKSRIF 255 >gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. longum JDM301] Length = 483 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 129/342 (37%), Gaps = 40/342 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + SDSR G +FVAI G + DGH F+ + QGA +V Sbjct: 24 ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAEQGATVAIVDHEVESDGL---- 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSG 141 P +VV +T L A + E +I+ +TG+ GK++ + + Sbjct: 80 ----PQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA--- 132 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +GPT + + SF + L + +++ G +H+ A RL Sbjct: 133 ----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RLT 180 Query: 201 GIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I + +G H+ +++ AK + + LLP + A++ ADD + V+ Sbjct: 181 RIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVPM 236 Query: 260 AHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYN 314 A A VL G Q + V A + + +G +PG V N Sbjct: 237 AGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMN 296 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355 AL AA + + G+ V L H + P R N G Sbjct: 297 ALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338 >gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026] Length = 481 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + ++ Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVRPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFDENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|254775010|ref|ZP_05216526.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp. avium ATCC 25291] Length = 496 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 TN+ DH+D++ + AY E L P + ++ DD + + +R G RVL Sbjct: 189 TNIETDHLDFYGSADAYIAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247 Query: 269 -SVGYQGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317 G G+ + + A + +QQ T I + G+ L +PG NAL Sbjct: 248 YGSGSHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNALG 307 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370 A I IG + VL+ L V RFE VGT GG R++ DYAH + Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGSAPSSTVRVFDDYAHHPTEIA 365 Query: 371 MILKNIRTI----TSGRIIVVF 388 L +RT+ GR I VF Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387 >gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 456 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 12 PELINQLSIFPMQWR----ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67 P ++L++ P+ R + + VS+DSR I G +FVA+ G + DGH ++ Q A+G Sbjct: 4 PMTFSELTV-PLDARLVGGDCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQVAAKG 62 Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGK 126 A +V + P LVV +TRK L+ L A G + AVTG+SGK Sbjct: 63 AVGALVEHEVE--------GAALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114 Query: 127 SSVASFVQQICQRSG 141 ++V + I + G Sbjct: 115 TTVKEMLASILRTRG 129 >gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991] Length = 457 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 21/144 (14%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + V DSR + G +++ I G +GH F+ QAI GA+A++ Sbjct: 23 EEMLMGVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVLWERR---------- 72 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ--I 136 N P +++V++T K L A + ++ +TG++GK+S VASF+ Q I Sbjct: 73 EPNPPKEVTVILVEDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYI 132 Query: 137 CQRS-GLSSFQIGPTSTISSFAQD 159 Q++ G + +IG T+ SF+Q+ Sbjct: 133 TQKTMGNFNNEIGVPLTLLSFSQN 156 >gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp. WH 8109] gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp. WH 8109] Length = 461 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/288 (22%), Positives = 121/288 (42%), Gaps = 44/288 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + +TGT+GK++V + + + SGL++ +G ++ +F Q TP P +L L Sbjct: 113 IGITGTNGKTTVTHLLSHVLEASGLTAPMGGNMGLSAADLAF-QIGSGATPRPDWLVMEL 171 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 S + V+ + G +T L DH++ H + +AY K L Sbjct: 172 SSYQIEAAPAVAPK-----------------IGIWTTLTPDHLERHGSLEAYRAIKRGLL 214 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQ 290 E + A+ ADD ++ +R+ + G V S G Q + + + N Sbjct: 215 E----RSECALFNADDPDLRQ-QRRSWDRGTWVSSEGARPDDQPADLWIDDEGMVRNNAT 269 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + + +PG N L+ A + +G+ + + L VP R E +G Sbjct: 270 RLFAADA------LAMPGRHNRQNLLLVAAASLKVGLSPQQIADALRTFPGVPHRLEKLG 323 Query: 351 TNSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 T + G ++ D T+ ++ E+ L+ ++ G ++V+ GG QG Sbjct: 324 TLA-GASVFNDSKATNYDAAEVALRAVQ----GPVVVL--AGGQTKQG 364 >gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas naphthalenivorans CJ2] gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas naphthalenivorans CJ2] Length = 478 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 118/284 (41%), Gaps = 43/284 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+ GT GK++ S V + GL PT F RL + A A + L Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLD-----PT-----FVIGGRLNS------AGANAKL 151 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMR 232 S ++ VEA D L+ + ++A TN+ DH+ D+ ++A+ + Sbjct: 152 GSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGNLKKAFVD---- 202 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHN 287 F +P AI+ DD ++++ C + S G Q + I+++ V A +H Sbjct: 203 -FLRRMPFYGTAILCTDDPVVRQIVPEM---SCPITSYGLNEEAQVRAINVRAVGAQMHF 258 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 Q V+ D D + L G+ V NAL A + + + + A V + L V RF+ Sbjct: 259 TAQRRNGVKLPDLDVVLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDFTGVGRRFQ 318 Query: 348 FVG--TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 G GGR V DY H + L R GR +V+ Sbjct: 319 SYGELPARDGGRFTVIEDYGHHPVEVAATLSAARGAFPGRRLVL 362 >gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia sibirica 246] Length = 449 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMFINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258 TN+ H+++ + + AK +F K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKKL 233 Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 R+ ++ G+ ++LK + K D P +P Sbjct: 234 SITDIHSFGRSAKTSAELILYENLGEQVYLK------------YKINKKVLDVTIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y ++ L I I G D + HL + GR E + N + R+ DY + S Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptostreptococcus anaerobius 653-L] gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptostreptococcus anaerobius 653-L] Length = 457 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 13/168 (7%) Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SS L+ +D A + NL DH++ H T + Y AK R+FE + ++ I+ Sbjct: 167 ELSSFQLES--IDMFSPTASTVLNLTEDHLNRHHTMENYAKAKARIFENQVD-DTVCILN 223 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---- 303 DD ++ + + H V+ + KF ++ + + + ++ E ++ L Sbjct: 224 YDDPITRSMAEDCH---ADVVFFSRKDKF---ERGIYLDDDNNIIVNNEIEEIALLKADE 277 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 LPG + N + A GL +A+G++ ++++ L+ V R E+V T Sbjct: 278 LSLPGGHNLENCMAAIGLTLALGVEIEVLVKVLKTFKAVEHRLEYVDT 325 >gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. equi 4047] Length = 461 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 82/372 (22%), Positives = 149/372 (40%), Gaps = 54/372 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR+I G +F+ + G + DGH FI A GA A FS S Sbjct: 26 LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142 P ++V+N A K +++AVTG++GK+S ++ + ++ G Sbjct: 75 RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T+ +D I L ++ + +S A H I Sbjct: 135 YNNDIGLPYTVLHMPEDTE-----KIVLEMGQDHMGD--IQLLSRIARPH---------I 178 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 L+ T +G H+ Y +++ KM++ + + +S I+ A ++ Sbjct: 179 ALL----TLIGEAHLAYFGSREKIAEGKMQIVDGM---DSNGILIAP---GDPILDPYLP 228 Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V+ G +Q + K C K +T PL G++ NA++AA + Sbjct: 229 DSQMVIRFGDHQELVVEDIKEC----KDSLTFRTNVLPRPVTLPLTGKYNATNAMIAAYV 284 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 + + ++E LE + + R E+V + G + D Y ++ +IL+ I Sbjct: 285 GKLLAVPDEDIIEALETVKLTRHRTEWVKA-ANGADLLADVYNANPTAMRLILETFAAIP 343 Query: 381 S---GRIIVVFG 389 + G+ I V Sbjct: 344 ANPNGKKIAVLA 355 >gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424] Length = 877 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 147/383 (38%), Gaps = 50/383 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ VTGT+GK+ VA V ++ Q LS G + F ++ + Sbjct: 485 VVGVTGTNGKTVVARLVARLLQ---LSGKHTGLACSDGLFLDRRQVESGDRANWEAGHRI 541 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFNAKMRLF 234 L ++ V E S + L + G TN + DH+ DY+ + +R Sbjct: 542 LMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRTQ 601 Query: 235 EELLPKESPAIIYADDAYSKE---------------------VMKRAHNAGCRVLSVGYQ 273 +++ ++ A++ A D E V RA AG R + V + Sbjct: 602 VDVVLQDGAAVLNARDERLVEMAGLCDGDVIFFGLTPELPAIVSHRA--AGKRAVYV-RE 658 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 GK V A + + V + + FQ+ N L A A+GI + L+ Sbjct: 659 GKI-----VLATGTSETALVDVAAVPLTYAGRV--AFQIENVLAAVAAGWALGISNDLIR 711 Query: 334 EHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + V VPGRF N G + VD AH + +LE + + + R +VV+G Sbjct: 712 AGVVTFDVGQVDVPGRFTLFERN--GATVVVDDAHNAPALEALATALERFPAERRMVVYG 769 Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIE 441 G R GK+ D + +D P +E ++ + G + I+ Sbjct: 770 AGVQRRDQDLVRQGKVLGQHFDRVFLCEDRSVKRALPDAEARALLKQGLYEGRRVTKIID 829 Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464 +G R AI A+ L D+LV+ Sbjct: 830 EGTRASAIEAALSQLVPGDLLVL 852 >gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 23344] Length = 457 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 18 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 69 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 70 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 123 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 124 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 176 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 177 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 233 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 234 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 293 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 294 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 353 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 354 LVIGEMGEVGDEG 366 >gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei NCTC 13177] gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 406e] gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 576] Length = 468 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|45657726|ref|YP_001812.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600966|gb|AAS70449.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 490 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 52/305 (17%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE--------------------------ELL---- 238 TN+ DH+DY+QT++ NA +R E ++L Sbjct: 183 LTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILGFSK 242 Query: 239 ---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQV 291 P E + + + SK+ +K + AG S G K ++ I + Sbjct: 243 YKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPDKIVYYTIQSGI-----L 297 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + K++ F PGE + NAL A C GI + ++ + + V R E++G+ Sbjct: 298 YFYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLGS 357 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA--LD 408 + G +Y DY H ++ +++++ + GR +++F R + + + A LD Sbjct: 358 KN-GIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQP--HRYTRTQNLYKEFAESLD 414 Query: 409 LADIAIVTDDNPRSEDP-EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 +I + EDP ++AE+I P I E I T L D LV Sbjct: 415 SGEIVFLLPIYSAGEDPIYGVKAELISDFMKFPAKILPKEISEGIFTLKSFLKPGDKLVT 474 Query: 465 AGKGH 469 G G+ Sbjct: 475 LGAGN 479 >gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1710b] gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1710a] Length = 468 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHTLGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [uncultured Flavobacteria bacterium] Length = 420 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 98/453 (21%), Positives = 181/453 (39%), Gaps = 75/453 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR +++G IF A+ G+ +G+ F +A+ GA AIV+ ++ +N+ + Sbjct: 14 ICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNY-----NNSDV 68 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V N L FA+ K + I+ +TG++GK++V + + + G ++ Sbjct: 69 FFVKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQ--------GYSTH 120 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTN 211 + +N + P + L+ S + V + A+ G + L I L G TN Sbjct: 121 ATEGNYNNHIGVPLTL-----LNIRDSHDIAIVEMGANHIG-EIKALCEISLPDYGYITN 174 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 G H++ + K L+E L S + + +D+ + + C ++ Sbjct: 175 FGLAHLEGFGGIEGVIKGKSELYEHLDKNNSISFVNPNDSIALK--------NCNSQNIE 226 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + K + V + + L L G +Q N L A I IG + Sbjct: 227 FTDGVNFFYKSG--------LLGVSFGNEEILTNLTGSYQENNVLAA----ITIGRNF-- 272 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVD-YAHTSNSLEMILKNIRTITSGR 383 LE + G ++ N+RG I++D Y S+E L+N + + Sbjct: 273 ---ELEDSKIAKGIANYIPQNNRGQIFKTGKNTIFLDAYNANPTSMEASLRNAVNLYK-K 328 Query: 384 IIVVFGCGG-------DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--------- 427 + V+ GG + Q +R I L++ + + S+ PEK Sbjct: 329 MPHVYIAGGLLELGEYSKSQHQRMIEIFQELEIENAWFIGKQFEESQMPEKYYNYRDTAQ 388 Query: 428 ----IRAEIIHGIPGFIEKGNRIEAIRTAIEML 456 +R + IHG +I KG+R A+ ++ L Sbjct: 389 ALEALRGKQIHGNFIWI-KGSRSFALEALLDEL 420 >gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN V +DSR ++ G +F I G DGH F QA +GA A+V S T+ Sbjct: 25 INAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRGAVAVVASRMPE----GVTV--- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P+++V +T + L AS ++AVTGT+GK++V + + R Sbjct: 78 -PVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKEMLAAVVSR 126 >gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC30] gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Enterococcus casseliflavus EC10] Length = 449 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 147/377 (38%), Gaps = 57/377 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E V DSR I+ +FV + G + DGH F QA GA A + S TI Sbjct: 19 ETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWSHP--------TI 69 Query: 87 RSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 ILV V +T K A K I+ +TG++GK++ V+ + + Sbjct: 70 EPPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQ----K 125 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDG 201 +Q T +N L P I A + + G+ H +E S + Sbjct: 126 YQTYKTQG----NHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPD---- 177 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSK 254 A + T +G HI+ +++ AKM + L +P + P + + + Sbjct: 178 ----AAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLL----EPFVP 229 Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + G L+ G QG + ++ Q +V G F P+ G + V Sbjct: 230 NLTQTIETFG---LTEGDLQGDIVE-------ESQDQTIFTVAGTTFT--LPVLGGYNVK 277 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NAL+A G+ G+ + E L + R ++V T G I D Y ++ ++ Sbjct: 278 NALIAIGIGRHFGVADEAIKEGLAHFQLTKNRTQWV-TAGNGAAILSDIYNANPTAMGLV 336 Query: 373 LKNIRTIT-SGRIIVVF 388 L + R + +GR I V Sbjct: 337 LDSFRKLPLAGRRIAVL 353 >gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7] Length = 457 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/342 (19%), Positives = 137/342 (40%), Gaps = 28/342 (8%) Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69 DF L N L+ Q +++ +++D+R + G +F+A+ G DGH FI +A +GA Sbjct: 2 DFDWLANVLTT-DYQGDNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAI 60 Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++V + + +V++TR L + + + +A+TG+ GK++ Sbjct: 61 GVIVDHKVDV---------DIAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTT- 110 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSV 187 V+++C + + S +T +F +N + P + + + G H+ Sbjct: 111 ---VKEMC--AAILSVHGDVLATKGNF--NNDIGVPLTLLRLEPQHRFAVIELGANHLGE 163 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 A + + K N+ H++ + AK +F+ L + AII Sbjct: 164 IAYTTAM-------AKPDVAVVCNVAPAHLEGFGSLMGVAKAKGEIFDG-LKENGVAIIN 215 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D +S+ + + + S + + + T+ + K LP Sbjct: 216 CDSEFSQYWLDKLEGRNIKRFSTSEKLDIWAEDISLDANARASFTLCTKQKKVPVTLALP 275 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 G+ + NAL+AA L + + + L + V GR + Sbjct: 276 GKHNISNALIAAALTSELDVTLDDIAHALATMGDVKGRVNLI 317 >gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pasteur 52237] Length = 468 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|313127012|ref|YP_004037282.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551] gi|312293377|gb|ADQ67837.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551] Length = 834 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 16/189 (8%) Query: 287 NKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLC--IAIGIDSAL---VLEHLEKL 339 N Q+ ++V D+ D PL G +Q NA +A L I +DS + LE + Sbjct: 232 NHQESAVAVVADDWSVDSRIPLLGAYQAENAGIACVLARQITDELDSEIDETTLERGLRT 291 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 PGRFE + T+ + +D AH + E + + + +VFG D+DQ K Sbjct: 292 AYWPGRFEVMETDPF---VVLDGAHNPGACESVASVLDDFDVDALHLVFGAMHDKDQRK- 347 Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN 457 M + D + +NPRSEDPE + A + G+ + + A+ TA + + Sbjct: 348 --MVEALPDADSVITCRPNNPRSEDPETL-AHVFEDAGVDDITVGDDVLSAVETARDRAD 404 Query: 458 KQDVLVVAG 466 D ++ G Sbjct: 405 ADDCILAVG 413 >gi|315924805|ref|ZP_07921022.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621704|gb|EFV01668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 457 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 22/216 (10%) Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SS L+ +D A + NL DH++ H T + Y+ AK R+FE E ++ Sbjct: 168 ELSSFQLET--IDTFAPKAAAILNLAPDHLNRHGTLENYYAAKARIFEN-QSAEDILVVN 224 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------ 301 ADDA +V++ A R + +G + I+ K Q + EG D D Sbjct: 225 ADDA---DVVRCVRKAPSRKIWFSLKG-----RPEKGIYLKGQTLMIAEGTDADQDTAVI 276 Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + G V NA+ A GL +G+ ++ + L V R EFV T GG Y Sbjct: 277 TEEALGIKGPHNVMNAMAAIGLAYFMGVPLVIIQKTLRAFKGVEHRQEFVAT--IGGVDY 334 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 ++ + +N+ + + + +T I++ G D Sbjct: 335 INDSKGTNT-DAAITALNAMTKPTILIAGGYDKQED 369 >gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase [Bacillus cereus E33L] Length = 147 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 16/119 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 KI + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 KITGLEMDSRKITNGNLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSG 141 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYG 130 >gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis M23864:W1] gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus epidermidis M23864:W1] Length = 449 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 51/286 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + ++S L+ G ++S AQ+ R P YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIGYVASKVAQEAR---PDE-YLITELS 168 Query: 176 YLSSQGVT----HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 G+ H+++ TN+ H+DYH+T + Y NAK Sbjct: 169 SFQLLGIEKYKPHIAI---------------------ITNIYSAHLDYHETLENYQNAKK 207 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQ 289 ++++ + Y Y + + + N + + Q + I++K ++N Sbjct: 208 QIYKNQTKDD-----YLICNYHQRHLIESENLKAKTMYFSTQQEVDGIYIKDGFIVYNGI 262 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 ++ + KD LPGE + N L A I G+ +++ L + R +++ Sbjct: 263 RI---INVKD----LVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTTFSGIDHRLQYI 315 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 GTN R + Y D + +N+L + S + +++ CGG DR Sbjct: 316 GTN-RTNKYYND-SKATNTLATQF----ALNSFKQPIIWLCGGLDR 355 >gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae FF5] Length = 134 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 24 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 76 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125 >gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B str. Eklund 17B] gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str. Eklund 17B] Length = 460 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 72/349 (20%), Positives = 132/349 (37%), Gaps = 68/349 (19%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVV--DNTRKFLSL--FASRLYGKHPEN 116 GA+ + S +++D ++A I N P L+ +N + ++ F + H N Sbjct: 54 SGADIYIGHSEKNIKDVDLVVYTAAIPENNPELIYAKENNIELMNRAEFLGSIMKGHKYN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS--------------SFQIGPTSTISSFAQDNRL 162 + A++G GK++ S + I ++ L +F+IG + + Sbjct: 114 V-AISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNFRIGSS---------DYF 163 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T + Y LS+ GV N+ DH+DY++ Sbjct: 164 ITEACEYKRSFLSFFPYVGV--------------------------ILNIDADHLDYYKD 197 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 F +L+P + I Y D+ KE++ +A C LS G++ + + + Sbjct: 198 IDE-ITETFGQFADLIPNDGYLIGYVGDSRVKEILFKAK---CNTLSYGFENADVTARNI 253 Query: 283 CAIHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 + K + V K FD PGE + NAL + + + ++ ++ L + Sbjct: 254 -TFNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSEC 312 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE+ G G + DYAH ++ L + I + VF Sbjct: 313 KGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVF 360 >gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter bemidjiensis Bem] Length = 469 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 61/378 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + G +FVA+ G + DGH FI A+++G + +++ + + + Sbjct: 28 VSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVTIFLAEESWAAK--HELPKGAGAV 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 LV D R L A Y + N+ + VTG++GK++ + +I Q GP Sbjct: 86 LVPDTLRALGDLAA---YHRRRFNLKTVCVTGSNGKTTTKEMLARILA-------QTGP- 134 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---- 206 + +N + P I+ L+ V + + S G +D + IA Sbjct: 135 GLKTEGNLNNLIGLPLTIF---RLTGRERWAVFEIGM--SEFG----EIDRLAEIAEPQV 185 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------- 256 G TN H++ + + AK LF L P S A+ DD Sbjct: 186 GIITNAFPAHLETLGSVEGVARAKGELFLRLKPG-SVAVYNVDDPLVSTCPTHLNVTRLT 244 Query: 257 --MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 ++ A + + S+G +G+ L+ +QQVT+S G+ +YN Sbjct: 245 FGLRGAEVSSASIQSLGKRGESFTLR---LPDGEQQVTLSAYGR-----------HNIYN 290 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMI 372 AL AA A+G+ L+ + LE+ RF+ G +D ++ +N S+ Sbjct: 291 ALAAAAAAHALGVPGDLIRQGLEEFSPYDKRFQL---EEVAGVTLIDDSYNANPASMAAA 347 Query: 373 LKNIRTITS-GRIIVVFG 389 L ++ + GR++ V G Sbjct: 348 LTTLKELQGEGRLVAVLG 365 >gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei K96243] gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei SAVP1] gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10229] gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 668] gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei NCTC 10247] gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei FMH] gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei JHU] gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei 2002721280] gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei ATCC 10399] gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1655] gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia pseudomallei MSHR346] gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Burkholderia mallei GB8 horse 4] gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia mallei PRL-20] Length = 468 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646] gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646] Length = 875 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 158/387 (40%), Gaps = 41/387 (10%) Query: 109 LYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 L+ + P ++AVTGT+GK++ V I GL ++G T T + + Sbjct: 470 LFPQEPPRFPLVAVTGTNGKTTTVRMVANILSAHGL---KVGMTCTDGVYVGSMCIRRGD 526 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQ 224 A L V +E + GL + L G TN+ DH+ D T + Sbjct: 527 CSGPESAKMVLLDPSVEAAVLEIARGGLIRGGLAYEYADVGIITNITGDHLGQDGVNTLE 586 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 K + E++ P E A++ ADD S EV KR + RV+ Q + L+K A Sbjct: 587 DLMFVKSLVAEQVKP-EGYAVLNADDITSVEVKKRVKS---RVIFFSLQEDNLVLRKHIA 642 Query: 285 -----IHNKQQVTISVEG-------KDFDFLFPLPGEFQ--VYNALVAAGLCIAIGIDSA 330 ++ K EG K D + G + V NAL AA A+ + + Sbjct: 643 EGGRGVYVKDGFIFFQEGDKSVSLMKVADIPAAMNGRARHNVQNALAAAAAGWALDVPAE 702 Query: 331 LVLEHLEKLH----VVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRII 385 + L PGR + S G RI +DY H +LE I+ R++ R++ Sbjct: 703 TIRRALSDFRCDESTNPGRLNII---SEGNIRIILDYGHNPAALEAIIGTARSMNPARMV 759 Query: 386 VVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 V GDR +G++A + I D++PR P ++ + ++ G K + Sbjct: 760 GVIASPGDRRDEAIVKLGQVAGRGFQRLIIKEDEDPRGRKPGEVASLLLEGALSAGLKKD 819 Query: 445 RI-------EAIRTAIEMLNKQDVLVV 464 +I EAI A+E D++V+ Sbjct: 820 QIDVILKEEEAITFALENAQDGDLIVI 846 >gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 609 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 55/371 (14%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L +F ++ +I V DSR + G +F AI +G+ ++ Sbjct: 174 KDFSEVLKREKLNEL-LFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++ + T ++ I+ V +T + A++ K ++ +TG+ Sbjct: 229 LDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGITGS 279 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK+S V + + + G +N + P I L+ + Sbjct: 280 NGKTSTKDIVYSLLSKKAKTLKTEGN--------YNNHIGLPYTI-----LNVTDEEKFV 326 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + KE+ Sbjct: 327 VLEMGMSSLG-EIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 384 Query: 243 PAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 + DD Y +V K N Y+ + + +++GK++ Sbjct: 385 -TFVCGDDVYLAKLDVNKIGFNEDNNFRIESYE------------FSDKGSKFTLDGKEY 431 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 + L G+ + N +A L IG+ + E L+ + + RF+ + G IY+ Sbjct: 432 E--MSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRV---GEDIYI 486 Query: 361 DYAHTSNSLEM 371 + A+ ++ M Sbjct: 487 NDAYNASPTSM 497 >gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Oceanobacillus iheyensis HTE831] gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15) [Oceanobacillus iheyensis HTE831] Length = 455 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 34/325 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EV+ D+R + +++ IVG + DGH FI AI GA A + + L + ++ Sbjct: 25 IQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKNGAIATLWDKSIPL---PSEWDNS 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+ V++T + A+ ++ VTG++GK++ + + + S Sbjct: 82 FPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTTKDLITSVVKTSY-------- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIAGS 208 +T + +N + P L+ LS Q T V V G+ Q ++ + IA Sbjct: 134 KTTATQGNLNNHIGLP--------LTILSMQPDTEVLV--LEMGMSQFGEIELLSKIAEP 183 Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G HI+ +++ AK+ + E + +S ++ DD + Sbjct: 184 DYTVITNIGESHIENLGSRKGIAKAKLEIIEGI---KSNGNLFIDDDEPLLAKENIDMDD 240 Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 +++ +G+ + I++ V +H + + E D + L GE NA A + Sbjct: 241 SQIIGIGFTKESDINISNV-KVHPDRT---TFEVTDKPYHVNLLGEHHAKNAAFAISIGK 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF 348 A+ I + KL V RFE Sbjct: 297 ALNISHENIQLAFNKLEVTGMRFEL 321 >gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhodopseudomonas palustris HaA2] Length = 479 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 154/379 (40%), Gaps = 45/379 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + +S DSR + G + AI G+ DGH F+ A+ GA VV +A Sbjct: 26 RDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALKAGAALAVVETAQ-----RGKFA 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P+L+VD+ L + ++AVTG+ GK+S ++ + G + Sbjct: 81 PDAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTSTKEALRGVLGAQGETH--- 137 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ----GVTHVS-VEASSHGLDQHRLDGI 202 ++++SF +N P+ LA+ + + G+ H +E + H + Sbjct: 138 ---ASVASF--NNHWGV--PLTLARCPASVRYAVFEIGMNHAGEIEPLVKMVRPH----L 186 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +I T + H+++ +A +AK +F L P A++ D+ K + A Sbjct: 187 AII----TTVEPVHLEFFSGIEAIADAKAEIFSGLEPG-GIAVLNRDNPMFKRLTASARK 241 Query: 263 AGC-RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 AG R++S G K + A+H + V S+ G D + +PG N+L Sbjct: 242 AGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLA 301 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEM---- 371 +G D AL L ++ GR E +G +D ++ +N M Sbjct: 302 AADLVGADLALAALALAQVEPAAGRGVRRTLEL----GQGAATLIDESYNANPASMAAAL 357 Query: 372 -ILKNIRTITSGRIIVVFG 389 +L + GR I V G Sbjct: 358 GVLGSAEISGQGRRIAVLG 376 >gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 442 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 86/339 (25%), Positives = 133/339 (39%), Gaps = 63/339 (18%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+DSR +F A+ G D H ++ +A QG A VV N Sbjct: 8 VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHP---------TEGN 58 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 L+V ++R L A L K ++A+TG+SGK++V V I Q+S + S + Sbjct: 59 IARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV-- 116 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 T +F +N + P + + L + + + G H+ A + L Q + L+ Sbjct: 117 LFTQGNF--NNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQ---PDVALV-- 169 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + AK +F L K AII AHN Sbjct: 170 --NNVMAAHLEGFGSIDGVATAKGEIFRG-LTKNGVAII-----------NLAHN----- 210 Query: 268 LSVGYQGKFI-----HLKKVCAIHN------KQQVTISVEGKDF---------DFLFPLP 307 YQ K+ H + A N +Q+ S +G F P Sbjct: 211 ----YQQKWQADIGRHAVQYFAYDNPRADFYAEQIHFSEQGASFLLHTPQGRVQINSPYL 266 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 GE + NAL A L + +G +A V + LE +V GR Sbjct: 267 GEHNISNALAATALSMNVGATTAQVKKGLETPSLVKGRL 305 >gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78] gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78] Length = 470 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + KV +VT+S+ GK F +PG +NA+ A +++G+ + L Sbjct: 252 VRVHKVTPRGLTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASAL 311 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGD 393 V R + G + G ++ YAH + L+ +R GRI+VVF Sbjct: 312 RSYTGVKRRLQLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRT 370 Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEI 432 ++ GK MG+ AL LAD ++V D P EDP E + +E+ Sbjct: 371 QELGKE--MGQ-ALALADSSLVLDIYPAREDPIEGVTSEL 407 >gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum DJO10A] gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium longum subsp. longum F8] Length = 480 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 133/343 (38%), Gaps = 42/343 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + SDSR G +FVAI G + DGH F+ + QGA +V + Sbjct: 21 ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 71 Query: 87 RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140 +S+ P +VV +T L A + E +I+ +TG+ GK++ + + Sbjct: 72 KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 129 Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +GPT + + SF + L + +++ G +H+ A RL Sbjct: 130 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 176 Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + +G H+ +++ AK + + LLP + A++ ADD + V+ Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVP 232 Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313 A A VL G Q + V A + + +G +PG V Sbjct: 233 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355 NAL AA + + G+ V L H + P R N G Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 335 >gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 328 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 24 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 75 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 76 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 125 >gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Acidobacterium capsulatum ATCC 51196] Length = 465 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 153/369 (41%), Gaps = 31/369 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R S DSR + +F A+ G++ DGH F+ AI +GA VVS A + + + Sbjct: 23 RPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRGAVGAVVSRARAAELLP--LI 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + +L+VD+ L A+ + + ++ VTG++GK++ + + Sbjct: 81 DHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTTKEAIAAV--------LGA 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-A 206 G S +N P L L ++ V +H + L I + Sbjct: 133 GYRVLKSQGNLNNNFGLP------LQLLRLDTEDEIAVIEMGMNHAGEITALARIAMPDW 186 Query: 207 GSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+G+ H++ + AK L + LP E A + DDAY + + H Sbjct: 187 GVVTNVGKAHVENFTDGIAGVARAKYELVQA-LPAEGIAFLNCDDAYVSQFGRDFHG--- 242 Query: 266 RVLSVGYQGKFIHLKKVCAIHN----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RV+ G +G HL +V + N ++T+S EG+ L GE V NAL A + Sbjct: 243 RVILFG-RGPCAHL-RVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAALAV 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 +A I + LE L R + + RG I D Y +L+ ++ + + Sbjct: 301 GLAAEIPLEIGARALESLRADEKRGQII--PWRGASIVNDCYNSNPEALKAMIATLMGMP 358 Query: 381 SGRIIVVFG 389 R I+V G Sbjct: 359 GNRHILVAG 367 >gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cronobacter sakazakii ATCC BAA-894] gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894] Length = 452 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 86/326 (26%), Positives = 134/326 (41%), Gaps = 41/326 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ V++D+R + G +FVA+ G + D H F QA A GA A++VS + + Sbjct: 24 IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVSRKLDI---------D 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR A+ + + P ++A+TG+SGK+SV I G + + G Sbjct: 75 LPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECGNTLYTAGN 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + TP Y L G H A + L + A Sbjct: 135 LNNDIGVPMTLLRLTPEHEYAVIEL------GANHQGEIAWTVSLTRPE-------AALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA---------YSKEVMKRA 260 NL H++ + AK +F LP AI+ AD+ ++V + + Sbjct: 182 NNLAAAHLEGFGSLAGVAKAKGEIFTG-LPANGIAILNADNNDWLNWQSVIGDRKVWRFS 240 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 N + + + IH+ + + T+ D D L PLPG + NAL A+ Sbjct: 241 PN----LDTSDFSATNIHITS-----HGTEFTLRTPTGDVDVLLPLPGRHNIANALAASA 291 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRF 346 L +A+G + L KL VPGR Sbjct: 292 LAMAVGAPLQAIKAGLAKLKAVPGRL 317 >gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 153 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ I VS D+R I+ G ++V I G + DGH F+ +A+ GA A + ++D Sbjct: 21 QYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL-----WVKDV- 74 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 A N P++ V++T L + A + ++ VTG++GK+S V + Sbjct: 75 ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDIVTSLL 128 >gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Atopobium vaginae PB189-T1-4] Length = 545 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 34/242 (14%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V DSR +Q G +FVA +G +G+ + +AI GA I ++ S QD N Sbjct: 33 DVVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDAS-QDLICAAEQNGC 91 Query: 92 ILVV---DNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFV-QQICQRSGLSSFQ 146 +L+ D+ FL AS ++ I + +TG+ GK++ Q + R + + Q Sbjct: 92 VLLRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQ 151 Query: 147 ------IG-PTSTISSFAQDN------------RLTTPSPIYLAKALSYLSSQGVTHVSV 187 IG P + +S+ AQD L T S + L L +++ G +H+ + Sbjct: 152 GNFNNLIGVPLTILSASAQDEVIVCEMGMNHPGELATLSRVAL-PCLCVITNIGTSHIGI 210 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 S + +L+ I I G +T + H H + Q ++ LP E P ++ Sbjct: 211 LGSREAIATAKLEIITAIRG-YTGSSKTHASEHASAQ-------LPVQKPLPAEIPPMLL 262 Query: 248 AD 249 D Sbjct: 263 LD 264 >gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Haemophilus influenzae 10810] Length = 457 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 126/322 (39%), Gaps = 30/322 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++ E+++D+R + +F A+ G K D H Q + Q V+ ++ S +I Sbjct: 24 QVEEINTDTRKSVSNSLFFALKGEKFDAH----QYLDQAVAQGAVAVVVQQENSSISI-- 77 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A L K +A+TG+SGK++V I Q + S + Sbjct: 78 --PQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTTVKEMTASILQHTAADSEAVL 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 T+ +F D P+ L L + + A+ + ++ A Sbjct: 136 FTN--GNFNND----IGVPLTL---LRLTEKHRFAVIELGANHQNEINYTTKLVQPNAAL 186 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNAG 264 N+ H++ + AK ++ L K AII A+ D + KE+ A Sbjct: 187 INNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAIINAEHNHLDIWQKEISNHAIQY- 244 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + GK +K V T+ + D P GE V NAL A L + Sbjct: 245 -------FNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNALAATALAMN 297 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G A V LE+ V GR Sbjct: 298 VGATLADVKAGLEQRSQVKGRL 319 >gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 435 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 117/301 (38%), Gaps = 48/301 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K+N + DSR+++ G +FV + GN+ DGH FI A GA +L + + I Sbjct: 19 KVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNGASG-------TLSERTLPIPE 70 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR-----SGLS 143 ++ V NT + L G +A+TG+ GK++ + + + + Sbjct: 71 GKFLIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLTHVFSKFFKTYRNVK 130 Query: 144 SFQ--IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 SF +G T T+S+ D L Y+ G + G ++ Sbjct: 131 SFNNILGLTYTLSNLPLDTEL-------------YIQELG-------TNRQGEIPELVEI 170 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +K T + + H + K+ + E + P I + + + SKE Sbjct: 171 VKPEISVVTAVEKAHTAGFKDISDIVKEKLSITEGAILSIVP-IQFKEFSKSKE------ 223 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 ++ G +G I L V NK + I G+ F P+PG V + L+A GL Sbjct: 224 -----TITFGREGD-IKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGL 277 Query: 322 C 322 Sbjct: 278 A 278 >gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cardiobacterium hominis ATCC 15826] Length = 451 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 8/117 (6%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +VS+DSR +QAG +F+A+ G G F+ A QGA A +V+ D P Sbjct: 32 DVSTDSRRLQAGELFIALRGPNFRGEDFLAAAKGQGAVAAIVAEYQPDADL--------P 83 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VV +T L A + A+TG++GK+S +Q++ Q G + +G Sbjct: 84 QIVVADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLG 140 >gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces sp. ACTE] Length = 473 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 41/232 (17%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A G + DGH + A+ GA A++ + P +VV Sbjct: 34 DSREVRQGSLFAAFAGERVDGHDYARAAVEAGAVAVLAARPV-----------GCPAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG------- 148 D+ L A + + ++A+TG++GK+S + Q+ +R + + G Sbjct: 83 DDVVAALGALACAVVERLGTAVVALTGSAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIG 142 Query: 149 -PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 P + +++ A+ L + ++GV H+ H L Q I L+ Sbjct: 143 LPLTALTATAETRHLVL-----------EMGARGVGHI------HYLAQLTPPTIGLV-- 183 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 N+G H+ +++A AK L E LP++ A++ ADD + + R Sbjct: 184 --LNVGSAHLGEFGSREAIAQAKGELVEA-LPEDGVAVLNADDPLVRAMAAR 232 >gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 487 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 106/422 (25%), Positives = 169/422 (40%), Gaps = 60/422 (14%) Query: 84 ATIRSNTPILVV--DNTRKFL---SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 A I + P LV DN + L A+ + G H + +LA GT GK+S S Q Sbjct: 81 AAIPQDNPELVAAKDNDIPVIRRSDLLAALMEG-HKQVLLA--GTHGKTSTTSMTVSAMQ 137 Query: 139 RSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 +GL SF IG Q NR T ++ G T + A + D Sbjct: 138 HAGLDPSFAIG--------GQLNRAGT-------------NAHGGTGEAFVAEADESDAS 176 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 L +A T + DH+D+ +++AYF + + P+ ++ A+D ++ Sbjct: 177 LLRYSPDVA-VLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAG 235 Query: 258 KRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-------------FDFL 303 +RA G V++ G K F + A +++ T EG D + Sbjct: 236 ERALERGINVVAYGSPEKSFTSTVPLAAELVREETT--AEGMDTTVNLDLPSVSETVRYE 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360 +PG V N++ A + G A + E L V RFE+ G+ + G R++ Sbjct: 294 LQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVDKQGKPVRVFD 353 Query: 361 DYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 DYAH + +L+ R GR+I F + AL LAD A+V Sbjct: 354 DYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVV 413 Query: 416 TDDNPRSEDP-EKIRAEII-HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470 D E P E I + II +P ++ + + A R + ++ DV++ G G Sbjct: 414 LDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSV 473 Query: 471 TV 472 T+ Sbjct: 474 TM 475 >gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 331] Length = 446 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +F+A+ G D + FI +A QGA VV+ +++ P+ Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 IFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H +V ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ + AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236 Query: 270 VG 271 G Sbjct: 237 FG 238 >gi|118463520|ref|YP_881541.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium 104] gi|166224703|sp|A0QF53|MURC_MYCA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118164807|gb|ABK65704.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium avium 104] Length = 496 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 26/202 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + AY E L P + ++ DD + + +R G RVL Sbjct: 189 TNIETDHLDFYGSADAYVAVFDAFVERLAPGGA-LVVCVDDPGAAALARRTAELGIRVLR 247 Query: 270 VGY--QGKFIHLKKVCA--IHNKQQVT-----ISVEGKDFDFL---FPLPGEFQVYNALV 317 G G+ + + A + +QQ T I + G+ L +PG NAL Sbjct: 248 YGSGPHGQAPSGEPLAATLVSWQQQGTEAVAQIRLAGEQQHPLVMRLSVPGRHMALNALG 307 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------RIYVDYAHTSNSLE 370 A I IG + VL+ L V RFE VGT GG R++ DYAH + Sbjct: 308 ALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTA--GGSAPSSTVRVFDDYAHHPTEIA 365 Query: 371 MILKNIRTI----TSGRIIVVF 388 L +RT+ GR I VF Sbjct: 366 ATLAAVRTLLEQSGGGRSIAVF 387 >gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri JV-V03] Length = 455 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 84/391 (21%), Positives = 159/391 (40%), Gaps = 47/391 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK----- 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 74 -PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + T V + F P+ G+ V NAL A + Sbjct: 236 DKSTFGFREEDTVFATTFRSY-MHHATFEVNDSEQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITS-- 381 G + + + L R ++ +G G +D + SN ++ +T+ Sbjct: 295 GENYEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345 Query: 382 GRIIVVFGCGGDRDQGKR-PIMGKIALDLAD 411 G+++V +D G+R ++G + L+L D Sbjct: 346 GQVMV-------KDGGRRIAVLGDM-LELGD 368 >gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus anginosus F0211] Length = 456 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 44/373 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR I+ G +F+ + G + DGH FI A GA A + S L D+ P Sbjct: 29 VEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFENGAVATL--SEKELDDY--------PS 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++VD+ L A K ++ AVTG++GK++ + + ++T Sbjct: 78 ILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLL------------STT 125 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211 ++ + I L + ++ V H D H L I + G T Sbjct: 126 YKTYKTQGNYN--NEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQPKVGIVTL 183 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H+++ +++ KM++ + KE +I D + + N V+ G Sbjct: 184 IGEAHLEFFKSRHEIAKGKMQIANGM--KEGGLLIVPADKIINDFLPSQQN----VVRFG 237 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + I L K+ K +T D P+ G++ NA++AA + + G+ Sbjct: 238 -PDEDIFLTKLE--ERKDSLTFETNFLDNAIDLPVTGKYNATNAMIAAYVALKEGVTQDK 294 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI---TSGRIIVV 387 + + L + R E+ + G I D Y ++ +IL+ TI GR + V Sbjct: 295 IQKAFATLELTRNRTEWKKAKN-GADILSDVYNANPTAMRLILETFSTIPFNEKGRKLAV 353 Query: 388 FG----CGGDRDQ 396 G D Q Sbjct: 354 LADMKELGADSKQ 366 >gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567] gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567] Length = 486 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 46/378 (12%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRS 140 S I + P L+ + L S ++AV GT GKS+ +S + + + Sbjct: 86 STAIHEDNPELIAARAQNLRVLHRSEALAAAMGSSQVVAVAGTHGKSTTSSMIAVMLDKL 145 Query: 141 GL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G SF +G + I+ + + RL + +G V+ S G Sbjct: 146 GFHPSFAVG--TVIAGYGSNARLGA-------------TGEGSWFVAEADESDGSFVRYQ 190 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I ++ TN+ DH+D+++T + + A R + P + DD ++ + +R Sbjct: 191 PAIAVV----TNVEPDHLDFYETPERVYEAFNRFVASMAPGGVLVTCW-DDEGARALAER 245 Query: 260 AHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTIS---------VEGKDFDFLFPLPGE 309 A +AG V++ G + + + ++ + ++ T+ EG+ D +PG Sbjct: 246 ARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQ-DAQLRVPG- 303 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYVDYAHTS 366 ++N L AA I + A + L+ G RF G + G +++ DYAH Sbjct: 304 --IHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDDYAHHP 360 Query: 367 NSLEMILKNIRTITSGR-IIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 + L+ RT+ G + VVF R Q + AL AD + V D P E Sbjct: 361 TEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQ-ALSKADRSYVLDIYPAREL 419 Query: 425 P-EKIRAEIIHGIPGFIE 441 P E + +E+I G GF E Sbjct: 420 PIEGVTSELITGA-GFSE 436 >gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2tet1] gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 434/Bu] gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 450 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + R+ L A R G H E ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152 >gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845] gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845] Length = 826 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 164/369 (44%), Gaps = 36/369 (9%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ I+ V +DSR + +F A+ + DG +IP+ A+G VV +D+ Sbjct: 20 KDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIPELYARGVRNFVVEVV--PEDW- 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 AT ++ L V + + L A R ++ I+ +TG++GK+ V ++ Q L Sbjct: 77 ATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKTMVKEWLYQ------LL 130 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S Q+ T + S+ ++++ P + L L+ + GV + S G D I+ Sbjct: 131 SPQMVVTRSPRSY--NSQIGVPLSVLL---LNENTQVGVFEAGI--SQPGEMMALRDIIQ 183 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHN 262 G FT LG H + + +A + K++LF ++ AI+Y AD+ + + + Sbjct: 184 PTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH-----DTEAIVYSADNEVMAQCLSQYDY 238 Query: 263 AGCRV-LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGK---DFDFLFPLPGEFQVYNALV 317 G ++ SV ++K AI K + T+S K + + P + V N++ Sbjct: 239 KGQKLDWSVKNTEAAFYIK---AIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVENSIT 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK-- 374 A + + +G+ A + E + +L V R E V G + D Y NSL++ L Sbjct: 296 CAVVSLHLGLTPATISERMAQLEPVAMRLE-VKEGQHGCTLINDSYNSDFNSLDIALDFM 354 Query: 375 NIRTITSGR 383 N R GR Sbjct: 355 NRRPDHKGR 363 >gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces sp. SPB74] Length = 473 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 34/247 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V +DSR ++ G +FVA G + DGH + A+ GA A++ AT Sbjct: 26 RVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVGAGAVAVL-----------ATRP 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VVD+ L A + + ++A+TG++GK+S + Q+ R G + + Sbjct: 75 LGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTGKTSTKDLIAQLLSRRGPTVWPP 134 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHR-LDGIKLI 205 G +N + P L+ L ++ H+ +E + G+ R L + Sbjct: 135 GNL--------NNEIGLP--------LTALRVTRDTRHLVLEMGARGIGHIRYLTSLTPP 178 Query: 206 A-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + G N+G HI ++ AK + E LP+ A++ ADD + + R Sbjct: 179 SIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEA-LPESGLAVLNADDPLVRGMAPRTR--- 234 Query: 265 CRVLSVG 271 RVL G Sbjct: 235 ARVLLFG 241 >gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/365 (20%), Positives = 152/365 (41%), Gaps = 35/365 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I+ G +F+A+ G K DGH F+ +A +GA A VVS N P+ Sbjct: 29 ISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKGAVAAVVSEDK---------YRNFPL 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V +T K L AS N ++ +TG+ GK++ + + G+S G Sbjct: 80 IIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTTKDMLNTVLLHYGVSHVNEGNL 139 Query: 151 STISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +N + P I A + YL + + + + + ++ + Sbjct: 140 --------NNNIGLPFTILKAPEDCQYL----ILEIGMSRAGEIKELSKISNPDIAV--I 185 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ H++ + AK+ + + ++ D+ + ++ NA V+S Sbjct: 186 TNIEPAHVENFSSLLDIAQAKLEILHG-MKNNGTLVLNKDNEHYDYLLS---NANRNVVS 241 Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + + L ++ N + I + G+ + P+ GE Y+ALV + ++ + Sbjct: 242 FGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTAVLQSLEL 301 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384 D + + LE V GR G +++ Y S++ ++ + T ++ R Sbjct: 302 DLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLGTYSNLRK 361 Query: 385 IVVFG 389 + + G Sbjct: 362 VALLG 366 >gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis HTCC2503] gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis HTCC2503] Length = 473 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 25/195 (12%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+ +H+D H A A F LP A + D + ++ R + R Sbjct: 188 GVITNIDPEHLD-HYGDFAGVRAAFDQFVANLPFYGFAAVCLDHPEVQALVGRVTDR--R 244 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-------------PLPGEFQVY 313 +++ G+ + A + + + EG FD +F P+PG V Sbjct: 245 LITYGFNPQ--------ADVRAENLDPTEEGSRFDIIFRKDDIVRLEGITLPMPGRHNVL 296 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL AA + +G+ + + + V RF VG RG RI DY H + L Sbjct: 297 NALAAAIVAREMGVPEDAIRDGFARFRGVRRRFTEVG-KYRGARIIDDYGHHPVEIAATL 355 Query: 374 KNIRTITSGRIIVVF 388 RT+ GR+I V Sbjct: 356 SAARTVARGRVIAVM 370 >gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 493] Length = 446 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +F+A+ G D + FI +A QGA VV+ +++ P+ Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 IFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H +V ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ + AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236 Query: 270 VG 271 G Sbjct: 237 FG 238 >gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 456 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 28 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 79 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 129 >gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dermacoccus sp. Ellin185] Length = 470 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 133/322 (41%), Gaps = 66/322 (20%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V +DSR AG ++VA VG DGH F+P A+A GA ++ A Sbjct: 23 RITGPVVTDSRECAAGSLYVARVGEHADGHDFVPAALAVGAAGVLGERAV---------- 72 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS--------VASFVQQICQ 138 +VVD+ + A + + P I+ +TG+SGK+S +A F I Sbjct: 73 DGASCVVVDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAP 132 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 L+S ++G T+ + R YL ++ + + GV H++ Sbjct: 133 YGSLNS-EVGVPLTVCRIDEATR-------YL---VAEMGASGVGHIAY----------- 170 Query: 199 LDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 + IA G N+G+ H+ + +A K L E LP++ AI+ DD+ + Sbjct: 171 ---LTKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEA-LPQDGVAILNVDDSRVR 226 Query: 255 EVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 + R +V+ VG Y+ + + + + + ++ + D L G Sbjct: 227 AMASRTQ---AKVILVGLGEDADYRATDVSIDEA----GRPRYHLTCPLGEADVRLALVG 279 Query: 309 EFQVYNAL----VAAGLCIAIG 326 E QV N+L A L +A+G Sbjct: 280 EHQVGNSLSVIAAATSLGLALG 301 >gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 456 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 54/355 (15%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K++ L NQ F +S DSR I +F+AI G DGH F+ + I +G Sbjct: 16 KNWDNLTNQFQSFK---------NISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGV 66 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126 +A+V+ +Q+ + P V +T + A L+ + NI + +TG+ GK Sbjct: 67 KAVVIKEG--MQNL---LPYKFPFWTVPDTLEAFQKLA--LFKRRKLNIPVVGITGSVGK 119 Query: 127 SSVASFVQQICQRSG---LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 ++ + ++ ++ G LS + D+ + I + +G+ Sbjct: 120 TTTKEMMGEVLKQLGKIKLSQLNFNNEIGVGLTILDSDFKDKTLIL------EMGMRGLG 173 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + L + I +I TN+G HI +++ AK + + L PK Sbjct: 174 QI------ENLSKFSEPDIAVI----TNIGSSHIGILGSKENITYAKCEITKHLNPK-GV 222 Query: 244 AIIYADDAYSKEVMKRAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 II A+D + +E +KR N +L + + ++ + +N+ ++ +E K F Sbjct: 223 VIIPANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSLNKTNLQGFYNRSNNSVIIEDKIF 282 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + F G +N L + +GI +F FV N R Sbjct: 283 EISF--QGFHNAFNFLFVYAVAKELGIKFK-----------DTNKFNFVSLNGRN 324 >gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida BIRD-1] Length = 455 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAGVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 L+V + R L + + ++A+TG+SGK++V + I + GL Sbjct: 80 LLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129 >gi|237793438|ref|YP_002860990.1| cyanophycin synthetase [Clostridium botulinum Ba4 str. 657] gi|229264115|gb|ACQ55148.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum Ba4 str. 657] Length = 873 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560 Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ D + + AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617 Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 R + + L + G I+LKK+ NK + I+V Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE + PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844 >gi|226947343|ref|YP_002802434.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2 str. Kyoto] gi|226840998|gb|ACO83664.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2 str. Kyoto] Length = 873 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560 Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ D + + AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617 Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 R + + L + G I+LKK+ NK + I+V Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE + PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKDGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844 >gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70] gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis 70s] gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D(s)2923] gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis Sweden2] gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/150] Length = 450 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + R+ L A R G H E ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152 >gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp. 1NLS2] Length = 478 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 21/289 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR I G + AI G+ DGH F+ A+ G V++ Q A + Sbjct: 27 VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGVAVIA-----QSHRAEFPDD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV + L A + I+AVTG+ GK+S ++ + Q G + Sbjct: 82 LPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTKEALRTVLQAQGKTH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ SS + + G + + ++ Sbjct: 137 -ASAASF--NNHWGV--PLSLARC---PSSARFAIFEIGMNHAGEIEPLVKLVRPHLAII 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 T + H+++ +A +AK +F L P + AI+ D++ + +A +G R++ Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTGLEP-DGAAILNIDNSQFARLRDKAKASGVSRIV 247 Query: 269 SVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNAL 316 + G K A+H + V + D + +PG N+L Sbjct: 248 TFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSL 296 >gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. pisi str. 1704B] Length = 456 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 28 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 79 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 129 >gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 460 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 144/352 (40%), Gaps = 44/352 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR +G ++VA VG DGH FI AIA GA +V++ S +T I Sbjct: 27 VETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCAIVTNP------SIGNPEHTRI 80 Query: 93 LVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 LV D T L L A RL I+ +TG+ GK++ I + Sbjct: 81 LVEDATYA-LGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTAGILAK-------FA 132 Query: 149 PT-STISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGI 202 PT + ++SF +N + P + + + YL + G+ H+ GL L G+ Sbjct: 133 PTVAPVASF--NNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLT---GLVSPDL-GV 186 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH 261 +L ++GR H+ + AK L E + KE+ +I DD + AH Sbjct: 187 EL------SVGRAHLGGFGSVAGLARAKAELVEGV--KENGLVILNLDDPNVAAMETVAH 238 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++G + I+ + V + G+ L G QV NAL A Sbjct: 239 TPVVYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAAIS 298 Query: 321 LCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 +C G++ ++ L + P R V SRG ++D ++ +N M Sbjct: 299 ICQGFGLELPEIVAALNGMKAASPHRMSIV--ESRGAT-FIDDSYNANPDSM 347 >gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes KPA171202] gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA1] Length = 485 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +A+TG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL037PA2] gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL044PA1] gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL037PA3] gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08] Length = 471 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 18/236 (7%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RV 267 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + G RV Sbjct: 188 ITNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTGTVRV 245 Query: 268 LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA- 324 ++ G + + ++ V ++ K V G L +PG + + NA AA C+ Sbjct: 246 VTYG-ESEQAEVRLVDLDLNGKAASATLVHGPTQGRLELQVPGRYNLSNA--AAAYCVGS 302 Query: 325 -IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 +GI +L + RF+ VG I+ DYAH L L R + Sbjct: 303 LLGISHRDLLAGIASFTGTLRRFQLVG-RVNDVSIFDDYAHHPTELRATLGAARRAVTGQ 361 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R +G+ AL L D IV+D P EDP + E++H Sbjct: 362 GRVIACFQP--HLFSRTRDFVGEFGSALTLVDRVIVSDIYPAREDPIPGVTGELVH 415 >gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. syringae 642] Length = 456 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V ++ + P Sbjct: 28 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVE-----REVQGAV---LPQ 79 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFLDRP--VAAVTGSSGKTTVKEMLASILRTRG 129 >gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK187] gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J165] gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA1] gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA1] gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL110PA2] gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA2] gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA1] gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA1] gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA2] gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA1] gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA2] gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA1] gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL063PA2] gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL086PA1] gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA4] gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA1] gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL050PA3] gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL036PA3] gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL067PA1] gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA1] gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA1] gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA2] gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL082PA1] gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL037PA1] gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA2] gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA2] gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA3] gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL078PA1] gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL027PA2] gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL002PA3] gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL072PA1] gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL059PA2] gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL046PA1] gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL030PA2] gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL097PA1] gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA3] gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL013PA2] gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA3] gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL092PA1] gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA2] gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL087PA1] gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL020PA1] gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL025PA2] gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes 266] Length = 485 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +A+TG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes SK137] gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL074PA1] gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL083PA1] gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL007PA1] gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL056PA1] gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL053PA1] gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL045PA1] gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL005PA1] gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL038PA1] gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL096PA2] gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA2] gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes HL043PA1] gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes HL099PA1] Length = 485 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 27/160 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R + G +F+A+ G + DGH F A GA A++V+ Q P LVV Sbjct: 31 DTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LPHLVV 81 Query: 96 DNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151 D+ + LS A + E +A+TG+SGK+S + QI L +F GPT + Sbjct: 82 DDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQI-----LETF--GPTVA 134 Query: 152 TISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 135 PVGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275] Length = 461 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 124/305 (40%), Gaps = 28/305 (9%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + FVAIVG D H +I A G +V+ + I+S+ I+ V Sbjct: 32 DSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGCRVFIVNKGKDID-----IKSDMNIIEV 86 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+T K L K + +TG+ GK++ V + LSS +T+ + Sbjct: 87 DDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRDMVY-----AALSS----ERATLKN 137 Query: 156 FAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 +N P ++ + SS + + S G ++ + + +N+G Sbjct: 138 EKNFNNHFGVPLTLF-----NLDSSYECAVIEMGMSGFGEIEYLANMVNPKVAVISNIGL 192 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ- 273 H++ +Q+ F AKM + + K + ++ DD + + R +++ G++ Sbjct: 193 SHVENLGSQEGIFKAKMEITTGFV-KGNTLVVNGDDKFLSTL--RDAERDYDLITFGFEK 249 Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 I+ + + SV G P G+ +YNA+ A IA+G + + Sbjct: 250 NNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAA----IAVGTVEGISM 305 Query: 334 EHLEK 338 E +++ Sbjct: 306 EGIKR 310 >gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington] gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl ligase [Rickettsia typhi] gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington] Length = 448 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 75/346 (21%), Positives = 141/346 (40%), Gaps = 43/346 (12%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V +S+ ++ G +F+A+ GN+ DGH +I AI +GA A++VS + D Sbjct: 23 NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGL 142 I++V+++ L A +A+TG+ GK+S ++ + Q R Sbjct: 75 KIILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 +++ +G ++S A D T I+ G+ H + L Q I Sbjct: 135 NNY-LGLLINLASMADD----TEYAIF---------ELGMNH---KGEISELVQILKPNI 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 +I +N+ H+++ + + AK +F+ + I +++ Y+K + + Sbjct: 178 AMI----SNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNL 233 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGL 321 + + S G L + + + + K D P +P F N L Sbjct: 234 SITNIYSFGRSKASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFA--NNYTGVLL 291 Query: 322 CIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 I I G D + +L + + GR E + N + R+ DY + S Sbjct: 292 IIDILGKDIEIAANYLADISITKGRGEII--NIQNSRVICDYYNAS 335 >gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae Cit 7] Length = 377 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I+ G +FVA+ G + DGH ++ Q A+GA +V + P Sbjct: 9 VSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQ--------GAALPQ 60 Query: 93 LVVDNTRKFLSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ + + P + AVTG+SGK++V + I + G Sbjct: 61 LVVLDTRKALAQLGAMNRNAFVDRP--VAAVTGSSGKTTVKEMLASILRTRG 110 >gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3548] gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida GA99-3548] Length = 451 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 44/368 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG++ V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIHNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD I+ P E+I +I G+ G++ AI ++ N+ V++ Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435 Query: 464 VAGKGHET 471 + G G T Sbjct: 436 IQGAGDVT 443 >gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. novicida U112] gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. novicida FTE] gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG] gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112] gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. novicida FTE] gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG] Length = 451 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 44/368 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG++ V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD I+ P E+I +I G+ G++ AI ++ N+ V++ Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435 Query: 464 VAGKGHET 471 + G G T Sbjct: 436 IQGAGDVT 443 >gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB] gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB] Length = 480 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 28/237 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAH----- 261 TN+ R+H+D+++ + +A ++ F ++P A++ DD + K ++ KR Sbjct: 196 TNIDREHLDFYRGIEDIKDAFLQ-FANIVPFYGSAVLCLDDPHIKTILSDIKRKTITYGM 254 Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 A R + + G + VT+SV PG F VYN+L Sbjct: 255 EPAADYRAQELRFNGAVTEYELYYRTECLGSVTLSV-----------PGMFNVYNSLATV 303 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + + + + + L+ V R E G + G + DY H + L R + Sbjct: 304 AVARELDMTFPDIQQGLKSYVGVGRRLEVKGKIA-GVTVVDDYGHHPTEISATLAAARQV 362 Query: 380 TSGRIIVVFGCGG-DRDQGK-RPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433 R+IVVF R Q R +G A AD+ IVTD P SEDP E + AE + Sbjct: 363 WKNRMIVVFQPHRYTRTQALFREFLG--AFTEADLLIVTDIYPASEDPIEGVTAEAL 417 >gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 8 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 68 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119 Query: 134 QQICQR 139 + +R Sbjct: 120 AAVLRR 125 >gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 8 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 68 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119 Query: 134 QQICQR 139 + +R Sbjct: 120 AAVLRR 125 >gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 8 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 68 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119 Query: 134 QQICQR 139 + +R Sbjct: 120 AAVLRR 125 >gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM 16795] gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM 16795] Length = 451 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 26/261 (9%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL DH++ H T + Y AK +F+ + + Y D+A RA ++ C + Sbjct: 185 NLSPDHLNRHHTMENYIMAKANIFKNQDKNDFTILNYDDEAV------RALSSKCNSQVL 238 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIG 326 + K ++ + ++N+ + I+++ K+ L LPG + N + A G Sbjct: 239 YFSRKHQGVRGI-YLNNEGNIVINID-KEIVLLHEDELSLPGGHNLENCMAATLAAYVSG 296 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ID ++ E L+ V R E+V T G +YV+ + +N I+ +TS + + Sbjct: 297 IDIEVIREVLKTFKAVEHRLEYVKT--VNGVMYVNDSKGTNP----DSTIKAVTSYKKPI 350 Query: 387 VFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN 444 + GG D+D ++ ++ + ++ + + E K + EII + N Sbjct: 351 ILIAGGYDKDSTYDELLDIAKQNVKALVLLGETASKIEACAKTKGFEIIKRVQ------N 404 Query: 445 RIEAIRTAIEMLNKQDVLVVA 465 EA+ T+ E+ N+ DV++++ Sbjct: 405 MKEAVETSAELANEGDVVLLS 425 >gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae] gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Flavobacterium johnsoniae UW101] Length = 428 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 36/364 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV-SSAYSLQDFSATIR 87 K +S D+R I+ G +F AI G D + F +A+ GA +V+ + +Y + D TI Sbjct: 12 KCQSLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDD--RTIL 69 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 N + + KF R Y K P I+A+TG++GK++ + + + + I Sbjct: 70 VNNSLETLQELSKF-----HRNYLKLP--IVALTGSNGKTTTKELINVVLSKKFKTKATI 122 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 G +N + P + LS+ + V + A+ + + + G Sbjct: 123 GNL--------NNHIGVPLTL-----LSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYG 169 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G+ H++ Q K +++ LL + +D E + G + Sbjct: 170 YITNFGKAHLEGFGGVQGVIEGKSEMYQYLLKNNKTVFVNLEDPIQIE-----KSTGIKN 224 Query: 268 LSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + G + LK I N Q + +E +DF L G + N A + Sbjct: 225 FTFGVNKESADLK----IKNIQANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFN 280 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 ++ AL+ E +E R + + S I +D Y +S+ + + N + + I Sbjct: 281 VEDALIKEAIENYIPANNRSQLLKKGSN--EIILDAYNANPSSMAVAITNFLQLENQNKI 338 Query: 386 VVFG 389 ++ G Sbjct: 339 MILG 342 >gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI18] gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA6140] gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID24-1] gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA 1090] Length = 452 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 8 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 68 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 119 Query: 134 QQICQR 139 + +R Sbjct: 120 AAVLRR 125 >gi|30248927|ref|NP_840997.1| cyanophycin synthetase [Nitrosomonas europaea ATCC 19718] gi|30138544|emb|CAD84834.1| Cyanophycin synthetase [Nitrosomonas europaea ATCC 19718] Length = 856 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 77/337 (22%), Positives = 132/337 (39%), Gaps = 34/337 (10%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 LFA + P ++AVTGT+GK++ + + + + L ++G T F + Sbjct: 460 LFAPGENARIP--VIAVTGTNGKTTTVRLIANMLENNRL---RVGIACTDGVFVNGQCVD 514 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ- 221 T A + L V +E + G+ + L TN+GR DH+ Sbjct: 515 TGDCSGPQSARNILFHPEVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANI 574 Query: 222 -TQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAHNAGCRVLSV 270 T + K + E + PK A++ ADD + R H +L Sbjct: 575 NTAEELAAVKRTIVENVNPKTGVAVLNADDPLVLGMASHCPGNVTFFSRNHRHPV-ILEQ 633 Query: 271 GYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 QGK + H V ++++++S + + FQ+ NA+ + G +AI Sbjct: 634 RVQGKRVIYMEDHHIIVAEAGTERRISLSQIRLTKNGMI----SFQIDNAMASIGAGLAI 689 Query: 326 GIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 +D + L VPGRF N R + DY H +++E ++ I I + Sbjct: 690 ELDWTTICAGLADFVSDAQTVPGRFNLF--NYREATLIADYGHNPDAMEALVCAIDHIPA 747 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 + VV GDR + +I D+ D ++ D Sbjct: 748 KKRTVVISAAGDRRNEDIRLQTRILGDVFDEVVLFQD 784 >gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6] gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6] Length = 462 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 24/189 (12%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 ++ DH+D+ + + N+ R F ELLP + II ADD K + K + C V++ Sbjct: 186 DIDADHLDFFKDLEDIRNS-FRKFAELLPADGTLIINADDPAFKMITK---DLPCEVITY 241 Query: 271 ------GYQGKFIHLKKVC-----AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 Y I ++ A++ + + +F +PG V NAL Sbjct: 242 SLSNIGNYTADMITYDELGHASFRALYKGEPIG--------NFALQVPGSHNVSNALAVI 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 L +GID+ + + + H RFE G G + DYAH ++ L R + Sbjct: 294 ALAEKLGIDADTIQKGFDSFHGTNRRFEQKG-EMNGATVIDDYAHHPTEIKATLNTARRV 352 Query: 380 TSGRIIVVF 388 I VF Sbjct: 353 PHKTIWCVF 361 >gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium ATCC 27679] Length = 493 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR ++ G +FVAI G + DGH F+ + AQGA A +V + + D + P +V Sbjct: 35 SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 86 Query: 95 VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 VD+T + L A R G P ++ +TG+ GK++ + + G + +G Sbjct: 87 VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 145 >gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bifidobacterium dentium Bd1] Length = 499 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR ++ G +FVAI G + DGH F+ + AQGA A +V + + D + P +V Sbjct: 41 SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 92 Query: 95 VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 VD+T + L A R G P ++ +TG+ GK++ + + G + +G Sbjct: 93 VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 151 >gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme; AltName: Full=UDP-MurNAc-pentapeptide synthetase gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2, 6-diaminopimelate--D-alanyl ligase [Rickettsia montanensis] Length = 449 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 83/384 (21%), Positives = 156/384 (40%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEIND-------KD 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A + +TG+ GK+S ++ + Q G Sbjct: 75 KIILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258 TN+ H+++ + + AK +F K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233 Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 R+ ++ G+ ++LK + K D P +P Sbjct: 234 SITDIHSFGRSSKTSAELILYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y ++ L I I G D + HL + GR E + N + R+ DY + S Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEII--NIQNCRVICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 468 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 65/114 (57%), Gaps = 12/114 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSL--QDFSATI 86 + +DSR I+ G IF+A+ GN+ DGH FI AI +GA+ +++ S ++ +D S Sbjct: 33 IKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFFG 92 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 + + +++ + ++L+ +S I+AVTG+ GK++ + ++ +R+ Sbjct: 93 VPSPDVAILEASERYLAGLSSL------REIVAVTGSVGKTTTKEAIGKVLERT 140 >gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium pseudotuberculosis FRC41] gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis C231] gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis 1002] gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase [Corynebacterium pseudotuberculosis I19] Length = 516 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 55/334 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + AG +FVA+ G + DGH + +A+A GA ++S + D + + Sbjct: 34 DSRKVTAGGLFVALNGARVDGHDYAAKAVADGAVGCLLS--RPVMDGMRPVPGVVVPPIP 91 Query: 96 DNTRKFLS--------------LFASRLYGKHPENIL--------AVTGTSGKSSVASFV 133 +N RK S L A L +H +IL VTG++GK+S + Sbjct: 92 ENERKRDSYATENDVDGAVAAVLRALGLIARHVIDILTQKGLVVVGVTGSAGKTSTKDMM 151 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTHVSVE 188 I +G + + P + +N + P A +S +S++G+ H++ Sbjct: 152 ATIFSAAGNT---VAPPGSF-----NNEIGHPYTALKCTAETQFLISEMSARGIGHIAHL 203 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 A+ + ++ G++L N+G H+ +Q A AK L E LP+ A++ A Sbjct: 204 AA---IAPPKI-GVEL------NVGTAHVGEFGSQTAIAQAKGELVEA-LPENGEAVLNA 252 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNK-QQVTISVEGKDF-DFLF 304 DD ++ R RV S ++ + HN + + +E ++ Sbjct: 253 DDPLVAQMASRTR---ARVTSYSAVSTAAAVYATDITFDHNACARFRLHIEDENVHQITL 309 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + GE QV NAL AA A GIDS + L + Sbjct: 310 LVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNR 343 >gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. longum JCM 1217] Length = 517 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241 Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277 + +++ D+ ++++ A NAG V + Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335 H A ++ T+ D+ + G+F NA A + A G+ D A L Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHA 347 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392 +E + + GR E VDYAH S+ +L + + RI +V G G Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406 Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443 ++ +R + + A + +A+ +D D E +I + G+I Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461 Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 +R AI AI ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 33/322 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + EV DSR + G +FVA+ G + DGH FI A +GA A +V +D + Sbjct: 24 VGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAAAALVE-----RDGDWPL--- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V +TR L + + ++ VTG++GK++V + I R G Sbjct: 76 -PVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKEMIAAILARRG-------- 126 Query: 150 TSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-A 206 +T+++ +N L P + + L + Y + + A++ G + RL I Sbjct: 127 -ATLATRGNLNNELGVPLTLLRLDREHRYAV------IEMGANAPG-EIARLTAIAAPEV 178 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN G H++ AK LF LP A++ ADD + + C Sbjct: 179 AVITNAGPAHLEGFGDLAGVARAKGELFLG-LPDAGVAVVNADDPQAPTWYALVGDRRCL 237 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 G + H + Q+ G PLPG V NAL AA + +A+ Sbjct: 238 RFGRGADADVRATAETAGGHFELQIP----GGRHPVRLPLPGRHNVMNALAAAAVAVALE 293 Query: 327 IDSALVLEHLEKLHVVPGRFEF 348 + ++ LE V GR ++ Sbjct: 294 VPLGDIVAGLEACSGVAGRLQW 315 >gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermomonospora curvata DSM 43183] Length = 475 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 33/230 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +FVA+ G + DGH F A A A A V + L D + P ++V Sbjct: 33 DSRAVVPGALFVALRGERADGHDF--AAAAVAAGAAGVLAQRPLDDPA------LPAVIV 84 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STI 153 D+ L A + + P+ ++ VTG++GK+S + Q+ +R GPT + Sbjct: 85 DDAVAALGRLAGGVLARLPQVTVVGVTGSAGKTSTKDLIAQVLRRH-------GPTVAAE 137 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----HRLDGIKLIAGSF 209 SF +N + P + A + H+ +E + G+ R+ ++ G Sbjct: 138 GSF--NNEIGHPLTVLRA-------DEQTRHLVLEMGARGIGHVAYLCRVAPPRI--GVV 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 N+G H+ ++A AK L E LP + A++ ADD + + R Sbjct: 187 LNVGSAHLGEFGDREAIARAKGELVEA-LPADGAAVLNADDPLVRAMAAR 235 >gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19] gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332] Length = 463 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 19 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 79 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130 Query: 134 QQICQR 139 + +R Sbjct: 131 AAVLRR 136 >gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC 27678] Length = 493 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR ++ G +FVAI G + DGH F+ + AQGA A +V + + D + P +V Sbjct: 35 SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 86 Query: 95 VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 VD+T + L A R G P ++ +TG+ GK++ + + G + +G Sbjct: 87 VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 145 >gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei BCC215] Length = 300 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 463 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 19 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 79 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130 Query: 134 QQICQR 139 + +R Sbjct: 131 AAVLRR 136 >gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37] Length = 447 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 94/395 (23%), Positives = 156/395 (39%), Gaps = 53/395 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +FVA G DGH + QA GA A++ S +L P +VV Sbjct: 32 DGRQAEPGGLFVAFAGEHVDGHDYAGQAGRAGAVAVLGSRPTTL-----------PTVVV 80 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++ R L A+ + + + ++ +TG+ GK+S + + +G + IG + Sbjct: 81 EDARAALQALAAHVVARLRDRLTVVGLTGSQGKTSTKDLLAAVLSHTGSTVATIGSLNNE 140 Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213 TTP +L + + ++G+ H++ + LD N+G Sbjct: 141 LGVPLTMLRTTPDTRFL---VLEMGARGIGHIAELTALVALD----------VAVVLNVG 187 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----------RAHN 262 + HI +++A AK L + L+P + AI+ ADD VM+ RA + Sbjct: 188 QAHIGEFGSREAIATAKAELLQGLVPGGT-AILNADDPRVL-VMRALTDGPALTFGRAEH 245 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A RVL + L ++ + T+ PL G Q NA AA Sbjct: 246 AHVRVLD-------LALDRL----GRPAFTLRTADASAPVALPLVGAHQALNASAAAAAG 294 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +A GI + L + R E G + + Y +S L + I +G Sbjct: 295 LAAGIPLDVTAATLATASLSKWRMELRGLSGGVSLLNDSYNANPDSTRAALDALAAIEAG 354 Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414 R I V G GD + + +G+ A AD+ + Sbjct: 355 RRIAVLGEMRELGDDSEAEHRAIGEYAARAADLVV 389 >gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291] gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02] gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11] gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18] gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1] gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae SK-92-679] gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2] gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria gonorrhoeae F62] Length = 463 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q PM + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VV Sbjct: 19 FICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVV 78 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 S +D +A + L VD+T L A + +TG+ GK++V + Sbjct: 79 SR----EDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEML 130 Query: 134 QQICQR 139 + +R Sbjct: 131 AAVLRR 136 >gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus sphaericus C3-41] Length = 457 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 17/210 (8%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G H+D + Y AK + E + + II ADDA +++ + + Sbjct: 180 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRA-DGTLIINADDANIEKISYQKFKG--K 236 Query: 267 VLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ G Q + K AI H + + V ++ P GE QVYNAL A C Sbjct: 237 IIKFGLQDSADY--KASAIQFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAIAACS 294 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-T 380 +G+ + L + EF T G +D T+N S+E LK + T+ Sbjct: 295 EMGLSIRQAIAGLRSFKQMARHLEF--TTGLGDSTIIDDTWTNNPTSVEAALKVLDTVGK 352 Query: 381 SGRIIVVFG----CGGDRDQGKRPIMGKIA 406 ++I+V G G ++ R I K+A Sbjct: 353 EKKVILVLGDIKRLGNFEEKYHREIGSKVA 382 >gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei S13] Length = 468 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis E/11023] Length = 450 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 18/146 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +L V + R+ L A R G H E ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFHGE-VIGITGSVGKTTTKNFANQLL--SSVYKV 132 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 133 FMSPKS------YNSQLTLPLSVLMA 152 >gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2] gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2] Length = 882 Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 112/272 (41%), Gaps = 24/272 (8%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L +G T+T + D + A LS++ + +E + GL + L Sbjct: 504 LQGKTVGMTTTSGIYIGDECILKGDNTGFVSARMLLSNKSIDAAVLETARGGLVRKGLGY 563 Query: 202 IKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 G TN+ DH ID T + +AK + E + PK A+I ADD +++ M R Sbjct: 564 DLADVGVITNVSEDHLGIDGVDTAEDLASAKSLVIEAVKPK-GYAVINADDGFARYFMDR 622 Query: 260 AHNAGCRV------------LSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPL 306 A + +S G + ++ ++ + K+ VTI + + KD F Sbjct: 623 AKSKVILFSKDKHSSIMQDHISQGKRAVYLDGGEIFLV--KKGVTIQLAKTKDIPITFGG 680 Query: 307 PGEFQVYNALVAA----GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 E + N L A GL + + A ++ L PGRF ++ +DY Sbjct: 681 ILECNIENCLAAVSALWGLDMPLETIKAGLVSFLPDTSSNPGRFNIFDMGEF--KVMLDY 738 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 +H E ++K ++ + + R++ + G GDR Sbjct: 739 SHNPAGFEEVIKFVKKLEANRLVGIIGMPGDR 770 >gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 461 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 160/397 (40%), Gaps = 51/397 (12%) Query: 5 DLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 DL + E++ ++ P + +RK+N + DSR G +F I G + D H F+ Q Sbjct: 5 DLTIGEMLEILETEAVGVPARTLKRKVN-LCMDSRESAKGVVFWPIKGARFDAHQFVSQM 63 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENILAVT 121 GA VV+ +F + P V D T+ L L RL+ +A+T Sbjct: 64 EKDGALMSVVNQTAIDPNF----KMYAP--VEDTTKALLKLAKGYQRLFKLKK---VAIT 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G++GK++ + + S + +T +F +N + P ++ L + Sbjct: 115 GSNGKTTTKEMTKAVL------SMKYNTHATKGNF--NNHIGVPMTLF---QLKHSHEAA 163 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V VE + G D+ R + TN+G H++ FN K+ + L Sbjct: 164 V----VEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLGDLDGVFNEKINITAG-LK 218 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + I+ ADD +V H +V++ G + + +K+ N D Sbjct: 219 ENGTLIVNADDERLCKVKATKH---YKVVTFGVRRGVVKPEKLKWTENLCA--------D 267 Query: 300 F-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 F F+ +PG+ +Y+AL A + A+ I + + L R E N+ Sbjct: 268 FYVGRTHFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAGFTSTSMRMEI--KNAN 325 Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFG 389 G ++ D Y +S +M L+ + + G+ I V G Sbjct: 326 GFKVISDCYNANPSSTKMALQTLGNMRVEGKRIAVLG 362 >gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bradyrhizobium sp. BTAi1] gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp. BTAi1] Length = 466 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + + Q +G + G T + R+ Sbjct: 117 VAITGTNGKSTTTALIAHLMQTAGYDTQLGGNIGTAILSLEPPRM--------------- 161 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G HV +E SS+ +D + G N+ DHID H T + Y K RL + Sbjct: 162 ---GRVHV-IEMSSYQIDL--TPSLDPTVGILLNVSEDHIDRHGTIENYAAVKERLVAGV 215 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 P E AII DD +S+ + R AG RV+ V Sbjct: 216 KP-EGTAIIGVDDGFSRAIADRLDQAGKRVVRV 247 >gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral taxon 299 str. F0039] Length = 825 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 76/343 (22%), Positives = 140/343 (40%), Gaps = 25/343 (7%) Query: 35 SDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +DSR + +F AI DG ++ +G VV+ + + A + N+ Sbjct: 29 TDSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRGVRNFVVNE---VPENYAVLYPNSNF 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V NT L A R + ++ +TG++GK+ V ++ Q+ S + T Sbjct: 86 LKVSNTLDALQRLAERHRDEFAIPVIGITGSNGKTMVKEWIYQLLSPSLI--------VT 137 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 S + +++ P ++L L+ + GV + +D R D I+ G T + Sbjct: 138 RSPRSYNSQTGVPLSVWL---LTNNTQLGVFEAGISEPGE-MDSLR-DIIQPTIGILTTI 192 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRV-LSV 270 G H + + + N K++LF +S +IY D+ K +++ G R LS Sbjct: 193 GDAHQENFTSLEEKCNEKLKLF-----TDSKLLIYNEDNTLVKRCVEQFSFEGQRFSLSR 247 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 + +++ KV + + S +G + + P E + N++ + + +GID Sbjct: 248 QNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIENSIECLAIGLYLGIDKN 307 Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 + E + L V R E I Y NSL++ L Sbjct: 308 AIEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDINSLDIAL 350 >gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bifidobacterium dentium JCVIHMP022] Length = 417 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 SDSR ++ G +FVAI G + DGH F+ + AQGA A +V + + D + P +V Sbjct: 41 SDSRQVREGSVFVAIAGERVDGHDFVSKVGAQGAVAALVD--HEVAD------AGVPQIV 92 Query: 95 VDNTRKFLSLFAS------RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 VD+T + L A R G P ++ +TG+ GK++ + + G + +G Sbjct: 93 VDDTVRALGELAKHNLERRRAIGS-PFTVIGITGSVGKTTTKDLMASLLSAMGETVAPVG 151 >gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica DSM 9799] Length = 455 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 96/384 (25%), Positives = 162/384 (42%), Gaps = 72/384 (18%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + +D+R + G +F+A+VG++ DGH F+ QA A GA A+VVS + S Sbjct: 24 VSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEASGAAALVVSR---------PVDSA 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV-----ASFVQ---QICQRSG 141 P ++V++T L + L + LA+TG+ GK+SV A F Q + R Sbjct: 75 LPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKTSVKEMTAAIFAQVGPTLATRGN 134 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYL----AKALSYLSSQGVTHVSVEASSHGLDQH 197 L++ IG T+ ++R I L A + Y SS + H +V + G Sbjct: 135 LNN-TIGVPMTLLELTPEHRFAV---IELGANHAGEIRYTSSLALPHAAVINNIRGAHLE 190 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 GI+ +A AK ++E L + AI+ DD ++ ++ Sbjct: 191 GFGGIEGVA---------------------RAKSEIYEH-LGEAGTAIVNLDDEWAPWLL 228 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----------FPL 306 +R +G Q +F + + A ++ +G + FL PL Sbjct: 229 ER----------LGDQNRFTYSSRGPADLWASALSRDADGC-YHFLLHRGEAEVLVRLPL 277 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG QV NAL AA L + + L + V GR + T G + +D ++ + Sbjct: 278 PGRHQVDNALAAAALASTAELSLEQIASGLAQAPTVAGRTQM--TALSGEVMLIDDSYNA 335 Query: 367 NSLE-MILKNIRTITSGRIIVVFG 389 N+ M ++ G ++VFG Sbjct: 336 NAASTMAAIDLMAERDGSSLLVFG 359 >gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 1106a] gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei Pakistan 9] Length = 468 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 88/373 (23%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA------VGEHAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNH---PGETEMLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G + + I G D GE NAL A +A G+ Sbjct: 245 FALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVP 304 Query: 329 SALVLEHLEKLHVVPGRFEF--VGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRI 384 A + LE V GR + S G +D + +N S+ + + ++ R+ Sbjct: 305 LAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRV 364 Query: 385 IVVFGCGGDRDQG 397 +V+ G D+G Sbjct: 365 LVIGEMGEVGDEG 377 >gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes HL025PA1] Length = 471 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 22/237 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVL 268 TN+ DH+D T QAYF+ + + P+ + ADD + E+ R + RV+ Sbjct: 189 TNVEADHLDNWGTPQAYFDGFVSMATR--PEVRYVVTNADDPGAAELACRLESTDTVRVV 246 Query: 269 SVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 + G + + + L + V +G+ +PG + + NA AA C+ Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGR---LELQVPGRYNLSNA--AAAYCVG 301 Query: 325 --IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GI +L + RF+ VG + ++ DYAH L L R + + Sbjct: 302 SLLGISHQDLLTGIASFTGTLRRFQLVGRVAD-VSVFDDYAHHPTELRATLGAARRVVTG 360 Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIH 434 GR+I F R G+ AL LAD IV+D P EDP + E++H Sbjct: 361 QGRVIACFQP--HLFSRTRDFAGEFGSALTLADRVIVSDIYPAREDPIPGVTGELVH 415 >gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum ATCC 6940] gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum ATCC 6940] Length = 484 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 48/292 (16%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRL 162 L A + G H + +LA GT GK+S S Q++GL SF IG Q NR Sbjct: 104 LLAELMEG-HQQILLA--GTHGKTSTTSMTVTAMQQAGLDPSFAIG--------GQLNRA 152 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 T ++ T + A + D L +A TN+ DH+D+ Sbjct: 153 GT-------------NAHAGTGAAFVAEADESDASLLRYSPTVA-VITNVEPDHLDFFHN 198 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--------- 273 +AY+ F + + + ++ +D ++ + RA G +VL G Sbjct: 199 AEAYYKV-FDDFADRIEESGYLVVCLEDDHAAQTGLRALERGIQVLGYGSAEAGEKYPSI 257 Query: 274 --GKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFPLPGEFQVYN---ALVAAGLCIAI 325 + +KV I + +V +++ G ++ + +PG V N ALV+ GL Sbjct: 258 PLAAEVLEEKVSVIGMQVRVRVALPGAQSQELSYELQIPGHHMVLNSLAALVSGGLA--- 314 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G + + + E L V RFEF GT S+ R++ DYAH + +L R Sbjct: 315 GGELSELAEGLTDFTGVRRRFEFRGTESQ-VRVFDDYAHHPTEVTAVLTAAR 365 >gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198] Length = 461 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S+DSR I +F+A+ G + D H FI +G+ A++V+ I + Sbjct: 30 IKSISTDSRKIDEDCLFIALAGERFDAHDFIADVKEKGSVAVLVNR---------EIDVD 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P L+V +T + A+ + I+A+TG+SGK+SV I + G + + G Sbjct: 81 CPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGSSGKTSVKEMTASILRHCGETLYTHG 139 >gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus porcinus str. Jelinkova 176] Length = 454 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 83/373 (22%), Positives = 150/373 (40%), Gaps = 59/373 (15%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI +A GA A FS Sbjct: 20 EFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFESGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 S P L+V + K A K +++AVTG++GK+S ++ + Sbjct: 69 EKEISGHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVLATTYKT 128 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ D I L +L G H+ E + Q Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPDDTE-----KIVLEMGQDHL---GDIHLLSEIA-----Q 175 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DA 251 + + LI G H+++ +++ KM++ + + S I+ A D Sbjct: 176 PHIAVVTLI-------GEAHLEFFGSREKIAQGKMQITDGM---NSHGILIAPGDPIIDP 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 Y E V+ G + + I +K + N T +V + PL G++ Sbjct: 226 YLPE--------NQMVIRFG-ENQEIFVKSIEESKNSLSFTTNVLNQ--ALTLPLSGKYN 274 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 NA++AA + + + ++E LE + + R E+ S G I D Y ++ Sbjct: 275 ATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNRTEWKKA-SNGADILSDVYNANPTAMR 333 Query: 371 MILKNIRTITSGR 383 +IL+ I + Sbjct: 334 LILETFTQIAPNQ 346 >gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 517 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241 Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277 + +++ D+ ++++ A NAG V + Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335 H A ++ T+ D+ + G+F NA A + A G+ D A L Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHA 347 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392 +E + + GR E VDYAH S+ +L + + RI +V G G Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406 Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443 ++ +R + + A + +A+ +D D E +I + G+I Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461 Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 +R AI AI ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 483 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 129/341 (37%), Gaps = 41/341 (12%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R N VS DSR G +FVAI G DGH F+ + QGA +V Sbjct: 26 RSTNTVS-DSRQAGPGSVFVAIRGEHVDGHDFVAKTAGQGATVAIVDHEVESDGL----- 79 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGL 142 P +VV +T L A + E +I+ +TG+ GK++ + + Sbjct: 80 ---PQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA---- 132 Query: 143 SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +GPT + + SF + L + +++ G +H+ A RL Sbjct: 133 ---TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RLTR 181 Query: 202 IKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 I + +G H+ +++ AK + + LLP + A++ ADD + V+ A Sbjct: 182 IAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGT-AVLNADDEH---VVPMA 237 Query: 261 HNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVYNA 315 A VL G Q + V A + + +G +PG V NA Sbjct: 238 GLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNA 297 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355 L AA + + G+ V L H + P R N G Sbjct: 298 LAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 338 >gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Phaeobacter gallaeciensis 2.10] Length = 470 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 WR ++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS Sbjct: 21 WR---VDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR------RPE 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + P+L+VD+ + L + ++AVTG+ GK+S + ++ G Sbjct: 71 GVSEDAPLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127 >gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus DSM 12680] gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus DSM 12680] Length = 461 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 57/333 (17%) Query: 69 EAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 E +VVSSA + A R P++ + L+L +++ G +A+ G GK Sbjct: 67 ELVVVSSAIPPDNPEIQAAKRLGIPVI---KRGEMLALLSNKYRG------IAIAGAHGK 117 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKA----LSYLSS 179 ++ S + + + +GL PT I Q + + +++A+A S+L Sbjct: 118 TTTTSMISLVLEDNGLD-----PTFIIGGQMQRSLVNAKLGRGELFVAEADESDASFLRL 172 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 HV+V TN+ DH+DY+Q+++ +A + ++LP Sbjct: 173 H--PHVAV---------------------VTNVEDDHLDYYQSEENIRSAFQQFVNQVLP 209 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296 E A++++ D + + +++ R++ G+ F + C I + + Sbjct: 210 -EGFAVLFSGDRFLAGLKQKSR---ARLVYYGFDDNSDYFCREIRACGIGSAFKAY--CR 263 Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ D +PG V NA+ A + +G++ + L RFE VG G Sbjct: 264 GQMLGDVYLKVPGIHNVLNAMAAIAVGCEVGVNFEGITRALGGFLGAKRRFEVVG-KLNG 322 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + DYAH ++ + R R+IV+F Sbjct: 323 ITVIDDYAHHPTEIKATILAARQFHRSRLIVIF 355 >gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1] gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1] Length = 473 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 34/283 (12%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ +A+ GT GK++ S V + G+ I I+S+ + RL + Sbjct: 108 KSTVAIAGTHGKTTTTSMVAALLDAGGVDPTVIN-GGIINSYGSNARLGASDWMV----- 161 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 VEA RLDG + TN+ +H+D++ + + + F Sbjct: 162 ------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHYGSFDKVKDCFVE-F 205 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293 E +P A++ D + ++ R + +V++ G+ + + V I + + Sbjct: 206 VENVPFYGAALLCIDHPEVQAIIPRVRDR--KVVTYGFSAQADVRGDNVTPIPGGNRFDV 263 Query: 294 SVEGKDFD------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V +D D P+PG V NAL A G+ + + I A++ K V RF Sbjct: 264 VVRNRDGDTRRIEGVTLPMPGRHNVQNALAAIGVALEMNISDAIIATGFAKFGGVKRRFT 323 Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387 VG G + DY H + +L R ++I V Sbjct: 324 KVGEVPVGDGVATVIDDYGHHPVEIRAVLAAAREGARAKVIAV 366 >gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri ATCC 33323] gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri ATCC 33323] gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 202-4] gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus gasseri 224-1] Length = 455 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 83/391 (21%), Positives = 159/391 (40%), Gaps = 47/391 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 ++ I V DSR +F+ + G + DGH F+ A+A GAEA + + + Sbjct: 20 EDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAEATLWKKGHEGK----- 73 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 ++ P++ V++ L A GK ++ +TG++GK++ V + + F Sbjct: 74 -PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMVAAVLAK----RF 128 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 + T ++F +N + P I L S + + + G H + ++ Sbjct: 129 NVHKTQ--ANF--NNEIGVPVTI-----LEMKPSTEILVLEMGMDRPGQLHHLSELVRPD 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T +G HI++ T+ +AKM + + L KE IY D E +RA Sbjct: 180 VCVITMIGEAHIEFFGTRDKIADAKMEITDFL--KEDGKFIYNGDEPLLE--ERAAKIKQ 235 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 + G++ + + T + + F P+ G+ V NAL A + Sbjct: 236 DKSTFGFREEDTVFATTFRSY-MHHATFEINDSEQQFKIPMIGKHNVSNALAAISVGRHF 294 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSNSLEMILKNIRTITS-- 381 G + + + L R ++ +G G +D + SN ++ +T+ Sbjct: 295 GENDEQIAQALANFTPTANRMQW----KKGDVGEAIMDDVYNSNPTA-----VKAVTTSF 345 Query: 382 GRIIVVFGCGGDRDQGKR-PIMGKIALDLAD 411 G+++V +D G+R ++G + L+L D Sbjct: 346 GQVMV-------QDGGRRIAVLGDM-LELGD 368 >gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 461 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 164/401 (40%), Gaps = 37/401 (9%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINE----VSSDSRHIQAGWIFVAIVGNKEDG 56 + + L++ +N ++I + + +IN VS D+R ++ G +F AIVG + DG Sbjct: 3 LSVSTLVFSTSQNTMNLITIASLLSQSCQINADITGVSIDTRTLKPGNLFFAIVGERFDG 62 Query: 57 HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 H FI +A A+GA A VV+ + + P VV + L+ A+ + Sbjct: 63 HDFIKEAEAKGASAAVVNRSID--------GVHIPQFVVASPLMALAKIAAAHRQEMSCP 114 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALS 175 I+A+TG++GK++V + I + S + +N + P S + L K Sbjct: 115 IIALTGSNGKTTVKEMIATILPQP----------SHATKGNLNNHIGVPLSMLALNKQHR 164 Query: 176 YLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 Y + G H A + G+ Q + LI N+ H++ + +K + Sbjct: 165 YAVFELGANHPGEIAHTVGIVQ---PDVSLI----NNIAPAHVEGFGSIDGVARSKGEIH 217 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + L P AI+ DDAY+ + S + H + T+ Sbjct: 218 QGLSPT-GVAIVNDDDAYAHFWDDLIADKKILRFSSLHPADIYAQDIRLDTHGRAHFTLV 276 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + + +PG V NAL AA C A+GI + L V GR + ++ Sbjct: 277 LPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTMLSGQNQ 336 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGD 393 +D + +N L +L + ++ GR I VFG G+ Sbjct: 337 --STVIDDTYNAN-LRSVLTALEVLSGRPGRKIFVFGDMGE 374 >gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 438 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSL 79 FP + ER I ++ DSR G +FV I+G +DGH FI A+ +GA A++ S L Sbjct: 7 FP--FDERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTEL 64 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV------ 133 + +R V +TR L + ++ VTG+SGK+++ S + Sbjct: 65 KKKYPEVR----FWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSS 120 Query: 134 -QQICQRSGLSSFQIGPTSTISSFAQ 158 +++ Q +G ++ Q+G T+ A+ Sbjct: 121 ERRVFQTAGNANSQLGVPITLFQLAR 146 >gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM 43183] gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM 43183] Length = 471 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 103/441 (23%), Positives = 167/441 (37%), Gaps = 77/441 (17%) Query: 67 GAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPEN 116 GAE V SA L D S IR + P L R L A+ + G+ Sbjct: 61 GAEVFVGHSAEHLGDADTVVVSTAIRESNPELRAARERGLRVLHRSEALAALMAGR---R 117 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA-- 173 +AV GT GK++ S + + Q +GL ++ IG + D+ +++A+A Sbjct: 118 AVAVAGTHGKTTTTSMLTVVLQHAGLDPAYCIGGQLVTTGLGADD---GTGDVFVAEADE 174 Query: 174 --LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 S+L H++V TN+ DH+D + + Sbjct: 175 SDGSFLRYS--PHIAV---------------------VTNVEADHLDNYGAFEKVKENFA 211 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 R E + P + + ADD + E+ A G V++ G + L+ Sbjct: 212 RFVERIEPGGA-LVASADDPVAGELAGAARERGLTVVTYG-ESAGADLRLTGFTPRGLGS 269 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 ++EG + +PG +NA A + +G D A + + L R E G Sbjct: 270 RFAIEGLG-ELTLEVPGRHYAHNATAALAVARLLGCDFATIRDGLASFTGSMRRLERKG- 327 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--------TSGRIIVVFGCG-GDRDQGKRPIM 402 + G +++ YAH L L+ R +GRI+ VF R + Sbjct: 328 EAGGVQVFDSYAHHPTELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFFATEF 387 Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAI-------R 450 G+ AL LAD+A+V D EDPE G+ G + +G R+E + + Sbjct: 388 GR-ALGLADVAVVLDVYGAREDPEP-------GVSGRLIADAVPEGTRVEYVPVREQVPQ 439 Query: 451 TAIEMLNKQDVLVVAGKGHET 471 E+ D+++ G G T Sbjct: 440 VVAELARPGDLVLTLGAGDVT 460 >gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1] gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1] Length = 611 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 80/369 (21%), Positives = 156/369 (42%), Gaps = 51/369 (13%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++ + I+ + V+D L A++ K ++ +TG+ Sbjct: 233 LDKGASLVIADNT--------NIKDKRVVKVIDTIATMQDL-ATKYRKKLDIQVIGITGS 283 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V L S + T ++ +N + P + L+ + Sbjct: 284 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + K + Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 389 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD Y V VG+ + + NK + ++GK+++ Sbjct: 390 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIESYEFSNKGSKFV-LDGKEYE- 436 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ + N +A L IG+ + + L+++ + RF+ + G IY++ Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 492 Query: 363 AHTSNSLEM 371 A+ ++ + M Sbjct: 493 AYNASPMSM 501 >gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri AV19] gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri AV19] Length = 480 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 84/381 (22%), Positives = 153/381 (40%), Gaps = 44/381 (11%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA-QGAE-------AIVVSSAYSLQDFSAT 85 S D + AGW + +G ++G + I + +GAE A +V+ + Sbjct: 18 SGDPDSMIAGWF--STLGRAKEGDVVIRWWLDDKGAEIASERGVACLVTEHPRGKLIERC 75 Query: 86 IRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P+++ VD ++ +L +R + VTGT+GKS+ + I +G Sbjct: 76 DELGIPLILTEVDRANEY-ALRVAREKCAPDATAICVTGTNGKSTTNHLLHHILDTAGFD 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS-HGLDQHRL--- 199 ++ ++ N L P A+ + ++ VE S GL R+ Sbjct: 135 AY-----CNTDFRSEKNTLIDP-----VVAMELREERPEDYLCVEVSEVQGLPTGRIMED 184 Query: 200 ------DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 +K TN+G DH + + + +A + L K A++ DD Y Sbjct: 185 HAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAVYGVVR-ALRKGGIAVLNRDDRY- 242 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++R G + G+ + H+++ ++ + + E FPLP + +Y Sbjct: 243 ---VRRMTREGVETVWYGWDEGYSHIEER---DGEEWIVLDEEPLIPVREFPLPVDHFLY 296 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 NAL A A+GID + E L + RFE + + IY D+ H + + + Sbjct: 297 NALAAVAAAGALGIDREDIAEGLRTYQPLKRRFERLCDDP---LIYDDFCHNPDGVLATV 353 Query: 374 KNIRTITSGRIIVVFGCGGDR 394 + +R + ++IVVF G R Sbjct: 354 RALRRLGRSKVIVVFAIRGSR 374 >gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter splanchnicus DSM 20712] gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter splanchnicus DSM 20712] Length = 449 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 107/277 (38%), Gaps = 35/277 (12%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG 141 S I P++V R + G+H E ++ +TG++GK++ I +G Sbjct: 68 SPGIPDTVPMVVALRERGIEVISEIEFAGRHTEAKMVCITGSNGKTTTTLLTCHILTTAG 127 Query: 142 LSSFQIGPT--STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + + G S + A+D P+Y+ VE SS LD + Sbjct: 128 IDAGLAGNVGRSLAAQVAED-----AHPLYV----------------VELSSFQLDG--M 164 Query: 200 DGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + TN+ DH+D Y + Y ++K R+ + P++ IY D+ + Sbjct: 165 FDFRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQD--LFIYGLDSEAVGHRL 222 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC---AIHNKQQVTISVEGKDFDFL---FPLPGEFQV 312 R R+ Y + I K C A ++V + +E + F + G V Sbjct: 223 RQVRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFRIAKQEISIQGRHNV 282 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 YNA+ A C+ +G+ + E L V R E V Sbjct: 283 YNAMAAILACMQVGVSDEKIAEGLRTFPQVEHRLETV 319 >gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. longum JDM301] gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum subsp. longum JDM301] Length = 517 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 104/478 (21%), Positives = 190/478 (39%), Gaps = 84/478 (17%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G A V + YS + P L+V++ RK +SL ++ YG +P+N L V G +G Sbjct: 75 GLAAYVAETEYSAA-------TAAPGLIVNDARKAMSLLSAAFYG-YPQNELTVIGVTGT 126 Query: 127 SSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALS 175 + F Q + +++ G + SS ++ LTTP + + + Sbjct: 127 KGKTTTSYFTQAL-----INAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMR 181 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233 + G+ ++ +E SS R+ G+ +F N+ DHI H T + Y K ++ Sbjct: 182 EAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQI 241 Query: 234 FEELLPKESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFI 277 + +++ D+ ++++ A NAG V + Sbjct: 242 I-----ANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTA 296 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI--DSALVLEH 335 H A ++ T+ D+ + G+F NA A + A G+ D A L Sbjct: 297 HASFHIADGDQ---TLG------DYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHA 347 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGG 392 +E + + GR E VDYAH S+ +L + + RI +V G G Sbjct: 348 IESVRIA-GRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAG 406 Query: 393 DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--------G 443 ++ +R + + A + +A+ +D D E +I + G+I Sbjct: 407 NKAYDRRKEIVEAAENRIANFIFTAEDT----DTEPF-IDICMEMQGYITNKDVASTVIS 461 Query: 444 NRIEAIRTAI----EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD--IIREILGL 495 +R AI AI ++ ++L++ GKG+E + + K + D D ++ + GL Sbjct: 462 DRPTAITNAIYDARAHADRFNILLIIGKGNE--RWIKDHHKHVPFDGDDHVVERMFGL 517 >gi|291301477|ref|YP_003512755.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM 44728] gi|290570697|gb|ADD43662.1| UDP-N-acetylmuramate/alanine ligase [Stackebrandtia nassauensis DSM 44728] Length = 473 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 11/186 (5%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA---IIYADDAYSKEVMKRAHNAGC 265 TN+ DH++ + T + F E L P+ I+ ADD + V KR G Sbjct: 187 LTNIDVDHLNTYGTIEELVEG----FAEFLRGTDPSGSIIVCADDERAAAVGKRLAAEGR 242 Query: 266 RVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323 V+S G + + + ++ + + T S G+D F +PG N+ A + Sbjct: 243 TVVSYGTDAEADLRIGEITIDASGARYTASYRGRDLGSFFVTVPGRHLALNSAAALLAGL 302 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382 + +D + L V RFE GT + G R+Y +YA+ ++ L ++TI G Sbjct: 303 LLDVDVEELRTGLAAFTGVRRRFELTGTVA-GVRVYDEYAYHPTAMNAALSTLKTIAEPG 361 Query: 383 RIIVVF 388 R+IVVF Sbjct: 362 RLIVVF 367 >gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus AH1271] Length = 460 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 79/373 (21%), Positives = 153/373 (41%), Gaps = 51/373 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I + DS+ I+ G +FV I+ K DGH ++ +A+ GA A + +Y T Sbjct: 32 EIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 PI+ VD+T L A + N++ +TG++GK++V + I + G Sbjct: 85 GIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKDIINTILSTTYRVHKTKG 144 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + QIG TI +D +L + + ++S A Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSKIAQPD--------- 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T +G+ H++ +++ AK+ + + L K+ +Y D K Sbjct: 189 ----VAIITMIGQSHLETLGSREEIAKAKLEIIDGL--KDEGLCLYNGDEPLLLKNKNLS 242 Query: 262 NAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + C+ Y F + L + IH K + + + PL G+ + NA+V Sbjct: 243 SINCKAFGEKYTNDFFPTNVQLDEY-GIHFK------LNDSNIQYDVPLHGKHNILNAIV 295 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNI 376 + + + + L ++++ RF+F+ T G I D + S +S++ ++ Sbjct: 296 GIAIGQYYNVPVEKIQKALRQVNITHMRFQFL-TAKTGFTIINDAWNASPSSMKAAIETF 354 Query: 377 RTITS--GRIIVV 387 +T+ + +IIV+ Sbjct: 355 QTLNAYKKKIIVI 367 >gi|149926397|ref|ZP_01914658.1| cyanophycin synthetase [Limnobacter sp. MED105] gi|149824760|gb|EDM83974.1| cyanophycin synthetase [Limnobacter sp. MED105] Length = 870 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 40/390 (10%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 +F G+ P ++AVTGT+GK++ ++QI + L ++G T T + + Sbjct: 467 MFKKDENGRIP--VVAVTGTNGKTTTVRLIEQILRYHNL---RVGFTGTEGVVVNGHLID 521 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYH 220 T A L +E + G+ + L G TN+G DH+ ++ Sbjct: 522 TGDCSGPKSAHKVLVHPEADAAVLECARGGMLREGLGFDMCDVGIVTNIGEGDHLGLNFI 581 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIH 278 + + K L + + P A++ ADD ++ + K RVL + + Sbjct: 582 DSVEDLALLKSVLVQNVAPN-GLAVLNADDRHAANMAKLTPG---RVLFFTSNPDNPIVA 637 Query: 279 LKKV----CAIHNKQQVTISVEG--KDFDFL-FPLPGE----FQVYNALVAAGLCIAIGI 327 K IH+ + + IS + K D + PL FQV N + A + + + Sbjct: 638 AHKAKGRPVIIHDGRVINISYDDMEKTIDLMDVPLTNNGLFTFQVQNVMCAVAAALGLNV 697 Query: 328 DSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 + L VPGRF F +GG + DY H +++ ++ ++ I + R Sbjct: 698 PFNTIRAALGSFQSTPDTVPGRFNFF--KHKGGSVIADYGHNPDAVSTLVNTLKNIPAVR 755 Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI------ 436 VV GDR G++ D I+ +D + P+ + A + GI Sbjct: 756 RTVVISAAGDRRDQDITEQGRLVGGFFDHIILYEDACQRGRPDGETLALLQQGIALASGD 815 Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 P +E +AI+ A++ +++V Sbjct: 816 KKPSVVEVRGEFKAIQMALDETGPDHLVLV 845 >gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Candidatus Solibacter usitatus Ellin6076] Length = 442 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 30/220 (13%) Query: 34 SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93 S D+R AG ++ A+ G DGH FI A+ + A A+VV AY + ++ Sbjct: 27 SVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPG---------ELV 77 Query: 94 VVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 V D R L +A R +G ++ VTG++GK++ + + S +G Sbjct: 78 VPDTLRALQNLGAWARRNWGG---TVIGVTGSAGKTTTKDAIAHLLA----SEMPVG--K 128 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210 T+ +F +N + P + L GV + + +H + L I + G T Sbjct: 129 TVGNF--NNHVGVPLSLLR---LPDGCRAGVIEMGM---NHSGEIRELGAIARPEIGVVT 180 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 N+G H+++ + + AK L E L P + A++ ADD Sbjct: 181 NVGYAHVEFFDSIEGIALAKRELIEGLTP-DGVAVLNADD 219 >gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Thermaerobacter subterraneus DSM 13965] Length = 475 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG +F A+ G + DGH F+ QA+A GA V++ + + T ++ V Sbjct: 31 DSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLA-EVLPGGPPPGTAVVEV 89 Query: 96 DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139 +TR+ L+ A + + P ++ +TG+ GK++ + ++ Sbjct: 90 ADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQ 134 >gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf] gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4 str. 657] gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf] gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4 str. 657] Length = 458 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 69/327 (21%), Positives = 127/327 (38%), Gaps = 61/327 (18%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G+ N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA----IHNKQQVTISVEGKDFD 301 + ++K A C V++ G I +K C + N Q++ F Sbjct: 226 NIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFDVVKNNQKL--------FS 274 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 +PG+ + N+L + + +A + ++E +E RFE G + I D Sbjct: 275 VKLNVPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DD 333 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVF 388 YAH + L + ++ VF Sbjct: 334 YAHHPTEISATLDAAKKYPHNKLFCVF 360 >gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. AS9601] Length = 457 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/333 (22%), Positives = 140/333 (42%), Gaps = 50/333 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR + +F+AI G DGH F+ + + +G +++V+ + SN P Sbjct: 31 ISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKGVKSVVIKKG-----MQKLLPSNFPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 VV++T + A K I+A+TG+ GK++ + + + G ++F Sbjct: 86 WVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG TI + ++++ + +G+ + L ++ I +I Sbjct: 146 EIGVGLTILAADIEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHN 262 TN+G HI +++ +AK + + L P E II A+D + ++ +K + Sbjct: 190 ----TNIGTAHIGLLGSKENITHAKCEISKFLNP-EGVVIIPANDPFLEKTLKEFWKGRV 244 Query: 263 AGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R+L++ Q + I + +N TI +E F+ F G N L A + Sbjct: 245 IKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFEISF--EGFHNASNFLFAYAV 302 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 +GID A +F+FV + R Sbjct: 303 AKELGIDFA-----------SSNKFDFVSLDGR 324 >gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Treponema phagedenis F0421] Length = 466 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 55/367 (14%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 +++L+ D + Q + + R + VS DSR ++ G +FV + G K+DGH +I Sbjct: 1 MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRS-------NTPILVVDNTRKFLSLFASRLYGKHPE 115 A+ +GA + D S I++ + + V NT L A+R Y K Sbjct: 61 ALEKGAVLFFADEKFLSVD-SNKIKTEKLCDEFSASCIQVKNTLAALQA-AARFYLKKFP 118 Query: 116 NILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 N++ V TG+SGK++ + + S L + + + Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVL------------SQKFSVVMNKGNLNSETGL----P 162 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-------GSFTNLGRDHIDYHQTQQAY 226 LS + V + L +R +K I G TN+G HI +QQA Sbjct: 163 LSVFEVRDEHEVGI----FELGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAI 218 Query: 227 FNAKMRLFEELLPKES----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282 K ++F K+ P + D + + K V Y+ LK + Sbjct: 219 AEEKKQIF-SFFDKDCMGFVPDCPFTDFLQAVPLGK----------VVCYEN--TTLKNI 265 Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 I +K ++ KD + FPL G + NA L +G+ + LE + + Sbjct: 266 KKIESKGMYGSTIFYKDEEICFPLAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPI 325 Query: 343 PGRFEFV 349 GR +F+ Sbjct: 326 FGRSQFM 332 >gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida F1] gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas putida F1] Length = 455 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVAGVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 L+V R L + + ++A+TG+SGK++V + I + GL Sbjct: 80 LLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129 >gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas sp. TJI-51] Length = 455 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVSAGQLFVALTGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 L V + R L + + + ++A+TG+SGK++V + I + GL Sbjct: 80 LRVADCRLALGQLGALNRAAYDKPVVAITGSSGKTTVKEMLASILRTRGL 129 >gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp. 29_1] gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp. 29_1] Length = 447 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 33/271 (12%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL P+N +A+TGT+GK++ + ++ I + +G G N T Sbjct: 100 LAYRL--SQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAG-----------NVGTP 146 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 S + L + L + S V +E S+ L +D + NL DH+DY + + Sbjct: 147 LSELVLNEDLLHKSDYDVV---LEMSNFQLLD--IDAFHPRVATIINLTPDHLDYMASLE 201 Query: 225 AYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 Y+ +K R++ + IY DD KE +++ + +++S + + + K Sbjct: 202 EYYTSKTRIY----MNQDHNDIYLQNKDDVVLKEYLQK-YPPQAKIVSFSLEQEADCMIK 256 Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 AI+ + Q I+++ + G + N ++A CI GID + + L Sbjct: 257 NDAIYYQGQHIINLDD------IKIVGRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTG 310 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 V R EFV +G + Y D T+ +I Sbjct: 311 VEHRIEFV-REYQGVKYYNDSKATNTDAAII 340 >gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313] Length = 882 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G TST F D + A LSS+ V +E + G+ + L Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261 G TN+ DH ID T + AK + E + P +++ ADD + + M+RA Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626 Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N V+ Q GK +++ K I+N + + + K+ + E + Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686 Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 N+L AA + + + + L + PGRF V ++ +DY H Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427 ++K + I + R++ V G GDRD G+I + I I D + R +P + Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + + + K +E I + L K L+ A G V N E+ V Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862 Query: 488 IIREIL 493 + RE+L Sbjct: 863 VRRELL 868 >gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica OS145] gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica OS145] Length = 455 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 54/332 (16%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ IVVS +D + + + +V + F L + P ++AVTG++GKS Sbjct: 79 ADLIVVSPGLDARDADIQMARDAGVPIVGDVEIFAQL------NQRP--VVAVTGSNGKS 130 Query: 128 SVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 +V + V+Q+ Q G G + + QD A +Y+ Sbjct: 131 TVTTLVEQMGQYHGYRWVAAGNIGVPVLDALQQD-------------ADAYV-------- 169 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS L+ R +KL A + N+ DH+D + ++Q+YF AK+ +F + Sbjct: 170 -LELSSFQLETTR--SLKLNAAALLNVSADHLDRYDSEQSYFEAKLNIFNH---ASVSVL 223 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 D + +++ + V++VG + +K I + +I Sbjct: 224 NRQDQQHWPKIVPDS------VVTVGVDESVSDYGLVKDDAGIAMTRNGSILARAD---- 273 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 F L G + N A L +G+ + + +P R + V ++G R +VD Sbjct: 274 RFALAGTHNLVNIQAALALAETLGLSPDKGIAAIADFTGLPHRCQVV-YEAQGVR-WVDD 331 Query: 363 AHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392 + +N + E + +R + +GR+I++ G G Sbjct: 332 SKATNIGATEAAINGLRPMINGRLILIAGGDG 363 >gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM 12563] gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM 12563] Length = 462 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 98/426 (23%), Positives = 168/426 (39%), Gaps = 73/426 (17%) Query: 70 AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 A+V SSA S + I V+ L R YG +A++G+ GK++ Sbjct: 69 AVVTSSAISPANEEIVAAKAKKITVISRGEMLAELMRLR-YG------IAISGSHGKTTT 121 Query: 130 ASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 S + QI +GL+ I G + S A N L++ ++ Sbjct: 122 TSLISQIMMHAGLNPVCIIGGNHFNLKSNAVCNDLSSE------------------YMVC 163 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 EA RL + + TN+ DH+DY+ +A A + ++ + + Sbjct: 164 EADESDGSFLRLSPVINVV---TNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCF 220 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKK-----------VCAIHNKQQVTISV 295 +D V + +A + S G+ + H+ K A HNK+ + Sbjct: 221 ENDV----VRDLSKSANKKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLG--- 273 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 +F PL GE + N+L + G+ +GID + E L+ V R + + Sbjct: 274 -----EFSVPLIGEHNILNSLASIGVAYHLGIDVPNIKEGLKTFEGVGRRLNKL--YDKE 326 Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG--KIALDLADI 412 ++ DYAH ++ L ++R S RII VF R ++ + A + AD Sbjct: 327 ITLFDDYAHHPTEIKATLSSVRNAYKSRRIIAVF--QPHRYSRTELLLNDFEYAFNDADE 384 Query: 413 AIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQ-DVLV 463 I+TD E P + EII I ++K N+ I+ + +E + K D+++ Sbjct: 385 VIITDIYAAGEAPIAGVNGEIICDI---VKKQNKNVRYIKNIDEVLPVLESIKKDGDIII 441 Query: 464 VAGKGH 469 G G+ Sbjct: 442 TLGAGN 447 >gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium HTCC2255] gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium HTCC2255] Length = 470 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%) Query: 210 TNLGRDHIDYHQT----QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 TN+ +H++++ + + A++N F +P AI D + ++ R + Sbjct: 189 TNIDPEHMEHYGSFDNLKDAFYN-----FVSNIPFYGLAICNTDHPEVQSLVGRVDDR-- 241 Query: 266 RVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNAL 316 R+++ G+ + + + KK CA + I+++ ++ D + P+PG++ V NAL Sbjct: 242 RIVTYGFNKQADVRAENLKFKKGCAYFD-----IALQSENAFIKDVMLPMPGDYNVSNAL 296 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A + +G+D+ + L + V RF VG G I DYAH + +L Sbjct: 297 AAVAVSRHLGMDAKQIRNALLEFKGVKRRFTHVG-EINGVTIIDDYAHHPVEISAVLSAA 355 Query: 377 RTITSGRIIVV 387 + TSG++I V Sbjct: 356 KQATSGKVIAV 366 >gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 613 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 81/369 (21%), Positives = 160/369 (43%), Gaps = 51/369 (13%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++V++ ++D I+ V +T + A + K ++ +TG+ Sbjct: 233 LDKGA-SLVIADNTDVKD--------ERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V L S + T ++ +N + P + L+ + Sbjct: 284 NGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + KE+ Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN 388 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD Y A V +G+ + + +K + ++GK+++ Sbjct: 389 -TFVCGDDKYL---------AKLDVNKIGFNNSNTYKIESYKFSDKGSKFV-LDGKEYE- 436 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ + N +A L IG+ + L+++ + RF+ + G IY++ Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI---GEDIYIND 492 Query: 363 AHTSNSLEM 371 A+ ++ + M Sbjct: 493 AYNASPMSM 501 >gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Robiginitalea biformata HTCC2501] Length = 425 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 148/364 (40%), Gaps = 42/364 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +VS+DSR I IF A+ G +G+ F +A+++GA VV DF R Sbjct: 15 KVSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEG----DFPDEPRC--- 67 Query: 92 ILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I V D L RL K I+ +TG++GK++ + + + Sbjct: 68 IRVPDALAALQQLAMHHRLQCK--ARIIGLTGSNGKTTTKELIAAVLSKK---------Y 116 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRL--DGIKLIAG 207 T+++ N ++ L+ L T ++ VE ++ + RL + + G Sbjct: 117 RTLATRGNLNN-------HIGVPLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFG 169 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G+ H++ + K L+E L+ + + + ADD E K A A C Sbjct: 170 YITNFGKAHLEGFGGVEGVIRGKSELYENLMERGATIFMNADDPVQFE--KLAGYANC-- 225 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 VG+ + ++ + + V + V+ D L G + N V+A + G+ Sbjct: 226 --VGFSTRNPAYMQIKNLTDGPAVRLQVD--DVVVQTQLTGRYNFSNCAVSACIGKHFGV 281 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVD-YAHTSNSLEMILKNIRTITSGRII 385 + + E LE R + + RG RI +D Y S+ L+N+ + S R I Sbjct: 282 PAEAIAEALESYIPANNRSQLI---ERGNLRILLDAYNANPTSMAAALENLAEMDSPRKI 338 Query: 386 VVFG 389 + G Sbjct: 339 AILG 342 >gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 145 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDF 82 +ER I+ ++ DSR++ G +F+A G G F QA+AQGA AI + Q Sbjct: 27 QERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGAVAIAWEPNGPEVNRQAE 86 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENILAVTGTSGKSSVASFVQQ 135 + P++ V+ + SL A+R Y ++ VTGT+GK+SV+ + Q Sbjct: 87 RLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTVIGVTGTNGKTSVSHLLAQ 141 >gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302] Length = 857 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 84/365 (23%), Positives = 154/365 (42%), Gaps = 34/365 (9%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 KI V +DSR + +F A+ + DGH +IP+ +G VV+ + D+ AT Sbjct: 55 KIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVVTEVPA--DY-ATE 111 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145 + L V N+ + L A R + I+ +TG++GK+ V ++ Q +C + Sbjct: 112 YAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFI--- 168 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T S + ++++ P ++L L+ + G+ + L D I+ Sbjct: 169 ------TRSPRSYNSQVGVPLSVWL---LNEHTQVGIFEAGISQPGEMLALR--DIIQPT 217 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHN- 262 TNLG H Q+ + + +M+ E+L L ++ ++Y DD + + Sbjct: 218 IAVLTNLGDAH------QENFISKEMKCKEKLILFHDAKTVVYNGDDPIVNGCVNELEDF 271 Query: 263 AGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R+ S+ + +K V VT +G + + P + V N+ A + Sbjct: 272 KGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAAV 331 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRT 378 + +G+ ++ E +++L + R E V G + D Y NSL++ L N R Sbjct: 332 ALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSDINSLDIALDFMNRRP 390 Query: 379 ITSGR 383 GR Sbjct: 391 DHQGR 395 >gi|319777842|ref|YP_004134272.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171561|gb|ADV15098.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 907 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 88/401 (21%), Positives = 151/401 (37%), Gaps = 53/401 (13%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 LF G+ P I A+TGT+GKS+ A + I Q +G + +G TST + R+ Sbjct: 484 LFRGGKDGRIP--IFAITGTNGKSTTARMLSHILQANGAT---VGLTSTTGVYLNGERIM 538 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 T A L GV +E + G+ + L G+ N+ DH+ Sbjct: 539 TGDCSGPQSARIVLREPGVDVAVLECARGGILREGLAFDACDIGAVLNVHGDHLGLRGID 598 Query: 224 QAYFNAKMRLFEELLPKESP-AIIYADDAYSKEVMKRAHNAGCR-------------VLS 269 A+++ + +I+ ADD ++ + + A C Sbjct: 599 TIDDLAEVKSVVVESVRRGGWSILNADDIHTSAMSREAGGRICYFSLLNRSDWPDFLCSH 658 Query: 270 VGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 V G+ + ++ IH + ++ + F EF V N+L A + Sbjct: 659 VAEGGRAVTRERSRDGWDIVIHEDGESMFLMDVDEIPATFEGAAEFNVANSLAAVAMAHC 718 Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +A + L + PGR + G R VDYAH L+ + K + + Sbjct: 719 HDIPAATIRAALAEFTTSFEHSPGRLNVF--DGHGFRTIVDYAHNPEGLKALGKLVSHMK 776 Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438 G R I + GDR MG +A + D+ + ED ++R I G Sbjct: 777 RGYQRTIGLVAIPGDRRDCDIREMGAVASRIFDVIVF------KEDEHELRGRAPGTIAG 830 Query: 439 FIEKG--------NRI-------EAIRTAIEMLNKQDVLVV 464 + +G RI EA+ +++ ++D++V+ Sbjct: 831 LLREGALNAGCAPGRIQAVCPEKEAVDVCLQLAREKDLVVL 871 >gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus sp. m3-13] Length = 453 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 40/345 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R +G +++ I+G +GH F+ AI + V+S + Q ++ + Sbjct: 30 VSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKKG---AVASFW--QKDQPEPPTDLNL 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+T + L AS + ++ +TG++GK++ V + + ++F++ T+ Sbjct: 85 IVVDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTKDMVTSVLE----TTFRVHKTAG 140 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDG--IKLIAGSF 209 +N + P L+ LS + T V+V E G + L K A Sbjct: 141 ----NYNNHIGLP--------LTILSMKEDTEVAVLEMGMSGRGEIELLSSIAKPDAAVI 188 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCR 266 TN+G H+ +++ AK+ + L ++ II D+ + + N G + Sbjct: 189 TNIGESHMQDLGSREGIAEAKLEIAAG-LKQDGKLIINGDEPLLTDRVGGKTNVIPFGLK 247 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + YQ K I LK + I ++ ++ P+ G V NAL A + G Sbjct: 248 A-NNDYQAKDIMLKGIGT-----HFII----EETEYFIPVLGAHNVTNALAAIIVGELFG 297 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + + LE+L + R E V T+ GG ++ A+ ++ M Sbjct: 298 VSEENRKKGLEQLVITGMRNEVVETS--GGWTVINDAYNASPTSM 340 >gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio furnissii CIP 102972] Length = 453 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 17/142 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I VS+D+R I +FVA+VG + D H F QA+A GA+A++V A + Sbjct: 21 DTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P LVV NT+ L S ++ + +A+TG+ GK++V V I G F Sbjct: 74 --NVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFT 131 Query: 147 IG--------PTSTISSFAQDN 160 G P + + S QD+ Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153 >gi|255038732|ref|YP_003089353.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Dyadobacter fermentans DSM 18053] gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053] Length = 824 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 51/335 (15%) Query: 35 SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY---SLQDFSATIRSN 89 +DSR + IF AI G + DGH F+P+ A G VV A +L++ +AT Sbjct: 20 TDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWDDA 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--RSGLSS--- 144 +V + R L AS+ + ++ + G++GK+ V ++ Q+ RS ++S Sbjct: 80 QIWVVSSSIRALQQLVASK-RKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVASPKS 138 Query: 145 --FQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 QIG ++ + ++++ L + I A + YL Q V ++ Sbjct: 139 YNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYL--QPVMQPTI-------------- 182 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE----VM 257 G FTN+G H D ++++ K+RLF ++ +IY D + + ++ Sbjct: 183 -----GIFTNIGPAHDDGFRSRKQKITEKLRLFTKV-----KKLIYRKDYHEIDEEISLI 232 Query: 258 KRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVY 313 + NA LS G Y G + +V K + IS+ GK + F + + Sbjct: 233 LKPVNAFLETLSWGSNYSGSHV---QVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLE 289 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 N + G++ A++ E + L V R E Sbjct: 290 NLTHCIVFLLDFGLEPAVIQERVLLLKPVSMRLEL 324 >gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 453 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/345 (21%), Positives = 133/345 (38%), Gaps = 66/345 (19%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 + +V+SS S Q + N +L+ + L L GK I+ VTGT+GKS Sbjct: 61 CDLVVLSSGISPQSLPVEMAKNAGVLI----QGELDFVFPFLTGK----IIGVTGTNGKS 112 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 + ++ + + + G + G L+ + Q + ++ Sbjct: 113 TTSALIAHLLSKLGYKTALAGN--------------------FGFPLADFAKQDLDFIAA 152 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 E SS L H + TN+ DH+D+H + +AY +K R+ +LL + + Sbjct: 153 EISSFQL--HWANRFSCHIAVVTNICPDHLDWHGSFKAYVESKKRII-DLLSSDGYCVYQ 209 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----------IHNKQQVTISVEG 297 D +E+++ GCR G + C+ I + + + E Sbjct: 210 NKD---RELLR---TNGCR-------GAVLRWASDCSTGKCEEQDEIILHDSEAYLRTES 256 Query: 298 KDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +D + PL G V N +A +G D+ L +P R E VG Sbjct: 257 RDIKLFSYSILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDFKNLPHRCEKVG--E 314 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQ 396 + G ++D + +N + +I ITS G +++ G G +Q Sbjct: 315 KKGITFIDDSKGTN----VASSITAITSIPGTKVIILGGKGKGEQ 355 >gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales bacterium HTCC2150] gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales bacterium HTCC2150] Length = 465 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 96/382 (25%), Positives = 146/382 (38%), Gaps = 64/382 (16%) Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 F FA++ + + ++A+TG++GKS+ ++ + I R G S G I Sbjct: 104 FFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALMHHILTRVGRPSQLAG---NIGRGVL 160 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 D + V +E SS+ D R + FTNL DH+D Sbjct: 161 DIDPAIDGEV----------------VVLELSSYQTDLAR--SLTPDVAVFTNLSPDHLD 202 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKF 276 H YF AK RLF E P A+I D+A + + + RV+ V GK Sbjct: 203 RHGGMGGYFAAKRRLFAEGGPDR--AVIGVDEAEGRMLANQLAEGPVDDRVIRVSVAGKL 260 Query: 277 IHL-------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + K A K + S+ D + LPG NA + +G+ Sbjct: 261 TGMGWNIFVKKGFLAETRKGKQVASI---DLRSVAALPGVHNHQNAAMVYAALRTLGLAP 317 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVV 387 ++ +P R + VG G Y++ + +N S M LK + I R IV Sbjct: 318 KVIEAGFHDFAGLPHRSQPVGEID--GVKYINDSKATNVDSAAMALKAFKNI---RWIV- 371 Query: 388 FGCGGDRDQGK----RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443 GG +G P+MG + I TD P D EI H I ++ Sbjct: 372 ---GGQAKEGGISSLVPLMGDVTRAY---VIGTDPKPFLAD----LTEIDHVICNTMD-- 419 Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465 EA++ A N DV+++A Sbjct: 420 ---EAVKQAASDANAGDVVLLA 438 >gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360] gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360] Length = 824 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G TST F D + A LSS+ V +E + G+ + L Sbjct: 450 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 509 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261 G TN+ DH ID T + AK + E + P +++ ADD + + M+RA Sbjct: 510 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 568 Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N V+ Q GK +++ K I+N + + + K+ + E + Sbjct: 569 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 628 Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 N+L AA + + + + L + PGRF V ++ +DY H Sbjct: 629 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 686 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427 ++K + I + R++ V G GDRD G+I + I I D + R +P + Sbjct: 687 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 746 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + + + K +E I + L K L+ A G V N E+ V Sbjct: 747 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 804 Query: 488 IIREIL 493 + RE+L Sbjct: 805 VRRELL 810 >gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20] gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20] Length = 882 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G TST F D + A LSS+ V +E + G+ + L Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261 G TN+ DH ID T + AK + E + P +++ ADD + + M+RA Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626 Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N V+ Q GK +++ K I+N + + + K+ + E + Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686 Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 N+L AA + + + + L + PGRF V ++ +DY H Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427 ++K + I + R++ V G GDRD G+I + I I D + R +P + Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + + + K +E I + L K L+ A G V N E+ V Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862 Query: 488 IIREIL 493 + RE+L Sbjct: 863 VRRELL 868 >gi|325962947|ref|YP_004240853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter phenanthrenivorans Sphe3] gi|323469034|gb|ADX72719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter phenanthrenivorans Sphe3] Length = 473 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 44/270 (16%) Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 G+ + LA+TGT+GK++ + + + +GL + +G + TP + Sbjct: 83 GRKTADWLAITGTNGKTTTVGLTESMLRAAGLKAIAVG------------NVGTPILDAI 130 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 + Y +VE SS L H + + +A N+ DH+D+H + +Y K Sbjct: 131 RDPVEY------DVFAVELSSFQL--HWSESLSPVASVCLNIAEDHVDWHGSYDSYVADK 182 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCA-- 284 +++E + A +Y +A E + NA GCR + I + V Sbjct: 183 AKVYE----RTQKACLY--NAEQIETERMVENADVVEGCRAIGFTTLTPAISMLGVVEGL 236 Query: 285 ------IHNKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 I ++ + +D L P V NAL AAGL A G++ V + ++ Sbjct: 237 LVDRAFIEERKDSAAELASMRDLGALAP---RHMVANALAAAGLVRAYGVEPKAVRQGIQ 293 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 +PG G ++V+ + +N Sbjct: 294 DY--IPGDHRIQPVARHNGVLWVNDSKATN 321 >gi|307265454|ref|ZP_07547010.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919568|gb|EFN49786.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 819 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 30/298 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID +T + A+ A Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288 L E + ++ +++ ADD + + +RA G + Y H++K A++ K Sbjct: 594 LVVEAVKEDGYSVLNADDPMTTYLAQRAK--GKIIYFSRYDNNLTVKKHIEKGGIAVYVK 651 Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDR 767 >gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sphingomonas wittichii RW1] Length = 472 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 80/370 (21%), Positives = 151/370 (40%), Gaps = 32/370 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V+ DSR + G +F+A+ G DGH F+ +A A GA +VS A Sbjct: 24 RTDGVTFDSREVGPGDLFIALKGETTDGHRFLDKAFAAGAAGAIVSDA-----------C 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P + V +T L + + ++ VTG+ GK+ + R+ Sbjct: 73 DGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGTKEALYACLDRALPGRVH-- 130 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++ S+ T P+ LA+ + + GV + + S RL ++ Sbjct: 131 --RSVKSYNNH----TGVPLSLAR-MPADTRIGVFEMGMNHSGELAALTRL--VRPHVAI 181 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 T + H + ++ +AK +F+ L P AII D + ++ A R+L Sbjct: 182 VTAIAPAHSAFFASEADIADAKGEIFQGLQPG-GVAIIPYDSPHRDRLIAAAKPHAARIL 240 Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G + +H + V + +++ + + F PGE V NA+ A+G Sbjct: 241 TFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVIAAVWAVGG 300 Query: 328 DSALVLEHLEKLHVVPGRFE----FVGTNS--RGGRIYVDYAHTSN--SLEMILKNIRTI 379 D A ++ +PGR + VG+ + G + +D ++ +N S+ +K + Sbjct: 301 DLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAATIKMLGRE 360 Query: 380 TSGRIIVVFG 389 + R + V G Sbjct: 361 RADRRLAVLG 370 >gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11] gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11] Length = 607 Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 80/369 (21%), Positives = 161/369 (43%), Gaps = 51/369 (13%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 174 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++V++ +++D ++ V +T + A++ K ++ +TG+ Sbjct: 229 LDKGA-SLVIADNTNIKD--------KRVVKVTDTIATMQNLATKYRKKLDIQVIGITGS 279 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V L S + T ++ +N + P + L+ + Sbjct: 280 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 326 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + K + Sbjct: 327 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 385 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD Y V VG+ + + NK + ++GK+++ Sbjct: 386 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIENYEFSNKGSKFV-LDGKEYE- 432 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ + N +A L IG+ + + L+++ + RF+ + G IY++ Sbjct: 433 -MSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 488 Query: 363 AHTSNSLEM 371 A+ ++ + M Sbjct: 489 AYNASPMSM 497 >gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Bacillus megaterium DSM 319] Length = 469 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H+ +T + Y AK + E L P I+ ADD K V+ +H + Sbjct: 187 NIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADDENIKRVLDVSHLQNVVYIGK 246 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 +F K + + T+ + ++D P GE VYNAL A +GID + Sbjct: 247 NDSSQF-QAKDIKYANKGMAFTLKYQNTEYDAFIPGYGEHNVYNALAAIAAVFYVGIDIS 305 Query: 331 LVLEHLEKLHVVPGRFEF 348 + ++ L V EF Sbjct: 306 VAIQRLSLFEQVEEHLEF 323 >gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC 33406] gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC 33406] Length = 466 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 65/373 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 + + GT GK++ +S I SG+ S+F G T Y L Sbjct: 115 IGIAGTHGKTTTSSMAAHIMHESGMPCSAFLGGITQN----------------YNTNILI 158 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G V EA + D+ L IA N+ DH+D + Q+++++ F Sbjct: 159 GNHGDGAGWVVAEADEY--DRSFLQLSPDIA-VINNMDPDHLDIYSDVQSFYDS----FN 211 Query: 236 ELLPKESPA--IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 E L K P +I D +V +H + LSV + + V A + Q V + Sbjct: 212 EYLKKLKPGGIVIRRVDV---DVQIPSHAS----LSVTFG------ESVEADYRIQNVVV 258 Query: 294 SVEGKDF----DFL------FPLPGEFQVYNALVA--AGLCIAIGIDSALVLEHLEKLHV 341 G F DF +PG V NA A A + IDS + L Sbjct: 259 EDGGVTFSIDHDFTRWNNIRIEMPGMHNVMNATAAFLAAHFAGVSIDS--IKASLRSFGG 316 Query: 342 VPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR 399 V RFE++ N++ +YVD YAH LE +LK +R + G +++ VF R Sbjct: 317 VKRRFEYIYKNTK--LVYVDDYAHHPTELEALLKAVRMVFPGKKVVTVFQP--HLFSRTR 372 Query: 400 PIMGKIA--LDLADIAIVTDDNPRSEDP-EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM 455 M + A L L D ++ + P E P E I +++ ++ IP +K E++ T +E Sbjct: 373 DFMQEFAQSLALTDELLLMEIYPARELPIEGITSDVLLNLIPSTNKKVVSKESLLTELEK 432 Query: 456 LNKQDVLVVAGKG 468 LN DV++ AG G Sbjct: 433 LNF-DVVITAGAG 444 >gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer str. BVAF] gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer str. BVAF] Length = 482 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 54/341 (15%) Query: 65 AQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A+ +V+SSA +L + F A R PI+ R+ LF Y +A+ G Sbjct: 76 VNNADLVVISSAINLNNIEFQAAKRLKIPIM-----RRAEVLFELMRYKYG----IAIAG 126 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 T GK++ + + I +GL I + I S +R S ++ +A S Sbjct: 127 THGKTTTTAMLANIYVEAGLDPTFIN-GAIIRSEGVQSRFGC-SCYFIIEADESDKSFLW 184 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + +VE TN+ DH+ +Q + F LP Sbjct: 185 LYPTVEI-------------------ITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYG 225 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-----NKQQVTISVEG 297 A+I DD + V+ N ++++ G+ +C ++ K + T+ ++ Sbjct: 226 YAVICIDDPAIRSVLS---NVNRKIITYGFSKD----ADLCILNYHQYREKSKFTVLIKN 278 Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG------ 350 K + + +PG V NA + G+ I GI ++L + RFE +G Sbjct: 279 KKKLEIILNIPGYHNVLNATASIGVSIEEGIPDLVILRAMLNFQGTNRRFENLGFYSLKQ 338 Query: 351 TNSRGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 N R G++ + DY H L + +R+ R+I+VF Sbjct: 339 INGRVGKVMIVDDYGHHPTELHATIATVRSGWPDKRLIMVF 379 >gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia odorifera DSM 4582] Length = 453 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 142/348 (40%), Gaps = 42/348 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +INEV++D+R I G +FVA+ G + D H F A+A GA A++VS L Sbjct: 23 QINEVTTDTRQITPGCLFVALKGERFDAHDFAADALAAGAGALLVSKRLPL--------- 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P LVV +TR L A+ + + P ++A+TG+SGK+SV I ++ G + G Sbjct: 74 GAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGEVLYTAG 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLD 200 +F D I + L L Q G H+ A + L + + Sbjct: 134 ------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQ-- 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKR 259 NL H++ + AK +F LP + AII AD+ + + Sbjct: 178 -----TALVNNLAAAHLEGFGSLAGVAQAKGEIFAG-LPADGVAIINADNNDWPHWQTQL 231 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 R G ++ Q T+ PLPG V NAL AA Sbjct: 232 VGKTVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAA 291 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 L ++G V L +L VPGR + + G++ +D ++ +N Sbjct: 292 ALATSVGASLEAVRVGLGQLQAVPGRLFPI--QLKPGQLLLDDSYNAN 337 >gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 469 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 145/383 (37%), Gaps = 66/383 (17%) Query: 66 QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 QGA+ +V S+A + +A + P++ R + R ++ +A+ GT Sbjct: 63 QGADVVVTSTAVKKDNPEVTAAVAQQIPVI----PRALMLAEMMRF-----KDGIAIAGT 113 Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 GK++ S I +GL +F IG +++ + RL S Sbjct: 114 HGKTTTTSLTASILAAAGLDPTFVIG--GKLTAAGTNARLGKGS---------------- 155 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 ++ EA D L L+A TN+ DH+D + + F +P Sbjct: 156 -YIVAEADES--DASFLYLTPLMA-VVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYG 211 Query: 243 PAIIYADDAYSKEVMKR-------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 A + D + + ++ R A V S+G Q KF +H + Sbjct: 212 KAFLCIDSEHVRAILPRISKPHATYGLDDSADIYATDVESIGAQMKF-------TVHARL 264 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + E + FD + LPG V NAL A G+ + G+D V LE V RF+ Sbjct: 265 K---GHEPRTFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSY 321 Query: 350 GTNS--RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404 G +GG+ V DY H + L R R+++ F R R + Sbjct: 322 GEIELPQGGKALVVDDYGHHPVEMAATLSAARGAYPDKRLVLAFQP--HRYTRTRDLFDD 379 Query: 405 IA--LDLADIAIVTDDNPRSEDP 425 + L+ D+ ++TD EDP Sbjct: 380 FSKVLNTVDVLVLTDVYAAGEDP 402 >gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Pseudomonas entomophila L48] gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Pseudomonas entomophila L48] Length = 455 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 8/109 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREIADVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV ++R L + + ++A+TG+SGK++V + I + G Sbjct: 80 LVVADSRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLAAILRTRG 128 >gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 456 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 36/324 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNT 90 VS+DSR I AG +FVA+ G DGH ++ A A+GA A +V++ LQ S Sbjct: 24 VSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIVATDAAEGLQALS------L 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P++ V TR L A+ G+ +LAVTG++GK++ + I + +++ Sbjct: 78 PLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILK----AAYGEAVL 133 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209 +T +F D L P+ L + L+ + + + +H + L GI + Sbjct: 134 ATQGNFNNDIGL----PLTLLR-LNATHRAAIIELGM---NHPGEIAYLAGIARPTVALV 185 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN R H+ + +A K ++ L + A+ ADD ++K + R+ G R+++ Sbjct: 186 TNAQRAHLAGMGSLEAIAAEKGSIYTG-LDETGVAVFNADDPWAK--LWRSQCRGLRMMT 242 Query: 270 VGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G++ GKF HL + + ++++ D + LPG+ NAL AA + Sbjct: 243 FGFEQAADVTGKF-HLHGL-----ESRLSLFAPDGQADVVLALPGQHNARNALAAATAAL 296 Query: 324 AIGIDSALVLEHLEKLHVVPGRFE 347 A GI V L + GR + Sbjct: 297 AAGISLTAVQAGLSAFRGLKGRLQ 320 >gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii RSA 334] Length = 446 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +F+A+ G D + FI +A QGA VV+ +++ P+ Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H ++ ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ + AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236 Query: 270 VG 271 G Sbjct: 237 FG 238 >gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 463 Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 84/390 (21%), Positives = 159/390 (40%), Gaps = 22/390 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++NE+S+D+R ++ +FV ++G DGH FI QA+ +GA +V Q+F + Sbjct: 25 QVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGAIGALVQKG---QEFPLGKLN 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + ++ V++T + L + VTG++GK++ + I + ++F + Sbjct: 82 DFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKDMIAGILE----TNFNVL 137 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 +N++ P ++ L GV + + + L + ++ Sbjct: 138 KNEG----NLNNQIGLPLTLF---NLEPCHEIGVLEMGMNSLGEILSLAKT--VQPHIAV 188 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+G HI++ +Q+ AKM + L K+ +I DD + K V + + Sbjct: 189 ITNVGFSHIEHLGSQENILTAKMEITTRLREKDY-LLINGDDPFLKTVKEESKTYRIITF 247 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 + VC + + ++ K F PG VYN LVA + + + Sbjct: 248 GIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVGLHYQMT 307 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + + ++L + R E V T I Y + +S++ + + T R I + Sbjct: 308 PLAIQKGFDRLELSKMRLEIV-TYGDVKVINDAYNASPDSMKAAITVLNQSTGIRKIAIL 366 Query: 389 G----CGGDRDQGKRPIMGKIALDLADIAI 414 G G ++G R I IA D I Sbjct: 367 GDILEMGSFAEEGHRRIGSFIATSPVDYLI 396 >gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas macleodii ATCC 27126] Length = 510 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 66/363 (18%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G + +V+S +L + + V+ + F L AS + ++ +TG++G Sbjct: 75 DGVDTLVLSPGLALDIEQVALAQKCGVEVIGDVELFARLNASTSDATPAKRVVGITGSNG 134 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++V V + + G+ S + G P+ L L S V Sbjct: 135 KTTVTLLVNHLLKNCGVKSIEAG--------------NVGRPV-----LEALQSDADV-V 174 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 +E SS L+ + L A + N+ DH+D H T +AY +AK R+F+ A+ Sbjct: 175 VMELSSFQLETTS--SLVLEAATVLNISDDHLDRHGTLEAYIDAKHRIFD----NAKSAV 228 Query: 246 IYADDA----YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------------------ 283 ++ D Y + + A +S G + + + Sbjct: 229 VWRDGEFVAPYEQLITDAKGIAASNAVSDGESNAASNEESLASKNIVEYGLGESTTGFAI 288 Query: 284 --------AIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVL 333 A ++Q + I+ + + L L G V N + A G+C+ +G+ AL + Sbjct: 289 ASFDGDDSARDDEQSLYITFKDEKLIALSDIHLAGMHNVLNIMAALGICLQLGVSPALAV 348 Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC 390 +HL P R + +R I Y+D + +N + L+ + G++I++ Sbjct: 349 KHLRSFKAAPHRCVEI---ARVNDIRYIDDSKATNIGATVAALEGLAPTIQGKLILI--A 403 Query: 391 GGD 393 GGD Sbjct: 404 GGD 406 >gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prochlorococcus marinus str. MIT 9312] Length = 457 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 39/307 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR I +F+AI G DGH F+ + + +G +++V+ ++ + P Sbjct: 31 ISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKGVKSVVIKKG-----MQKSLPIDFPC 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LSSF-- 145 VV++T + A K I+A+TG+ GK++ + ++ ++ G S+F Sbjct: 86 WVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMMGEVLKKLGRIKLSYSNFNN 145 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG TI ++++ + +G+ + L ++ I +I Sbjct: 146 EIGVGLTILDTDVEDKVLVLE----------MGMRGLGQI------ENLSKYSEPDIAVI 189 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHN 262 TN+G HI +++ AK + + L PK II A+D+ +E +K + Sbjct: 190 ----TNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPANDSLLEETLKEFWKGRV 244 Query: 263 AGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +L++ Q +F + +N TIS++ F+ F G N L A G+ Sbjct: 245 IKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFEISF--GGFHNASNFLFAYGV 302 Query: 322 CIAIGID 328 +GID Sbjct: 303 AKELGID 309 >gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta proteobacterium NaphS2] gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta proteobacterium NaphS2] Length = 467 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 119/295 (40%), Gaps = 50/295 (16%) Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKS 127 +AIV+S L +TP + R+ + L +H + I+A TGT+GK+ Sbjct: 81 DAIVLSPGVPL---------DTPFMKAALKRQIPIIGEMELAARHVDVPIIAATGTNGKT 131 Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 +V SF+ ++ + GL+ F G + TP YL + ++ V Sbjct: 132 TVTSFLGRMLEDQGLAVFVGG------------NIGTPLTAYL------MGEMKADYLVV 173 Query: 188 EASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E SS LD + I +I N+ DH+D + AY ++K+R+FE ++ I Sbjct: 174 EISSFQLDTIERFTPEISII----LNISPDHLDRYADYSAYIHSKLRIFENQGAGQT-VI 228 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----IHNKQQVTISVEGKDFD 301 + DD K K G VL G LKK I N+ ++ E F+ Sbjct: 229 LNDDDIVLK---KTTPPEGTSVLRYG-------LKKGAGIDAFIENEGILSAVTEKGRFN 278 Query: 302 F-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 F LPG + N L A+G+ + + + + R E V N G Sbjct: 279 LSAFSLPGAHNLENLLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERVCANGHG 333 >gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 91] Length = 289 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella kingae ATCC 23330] Length = 454 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + IN + +DSR Q+G +FVA++G D H F+ +A+GA A+V S Sbjct: 15 LPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALV-----SRD 69 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 DF + L VD+T L A + +TG+SGK++V + + + Sbjct: 70 DFVGV----SGCLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLTTVLRE 124 >gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147] Length = 450 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + +L P + IN++++DSR Q G +F A+VG D H F+P +A+GA A+V Sbjct: 8 FVRRLFRLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVV- 66 Query: 74 SSAYSLQDFSATIRSNTPILVVDNT----RKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 S FS ++ + + + RK L+ F +YG +TG+SGK++V Sbjct: 67 -SRGDCASFSGCLKVDDTLAALQTLAAAWRKQLNPF---VYG--------ITGSSGKTTV 114 Query: 130 ASFVQQICQRS 140 + I + + Sbjct: 115 KEMLASILRTA 125 >gi|222149138|ref|YP_002550095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium vitis S4] gi|221736123|gb|ACM37086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Agrobacterium vitis S4] Length = 471 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 26/170 (15%) Query: 102 LSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 + LF K P+ +A+TGT+GKS+ + + I + +G QIG + Sbjct: 100 IELFVRERQAKAPDCPFIAITGTNGKSTTTALIGHILRHNGYD-VQIGGNIGTAVLT--- 155 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 L P+P + VE SS+ +D GI AG NL DH+D H Sbjct: 156 -LEPPAPD--------------RYYVVECSSYQIDL--APGIDPTAGILLNLTPDHLDRH 198 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + + Y K E L+ AII DD Y E+ KR AG V+ + Sbjct: 199 GSMENYAAVK----ERLVSGSDVAIIGVDDDYCLEIAKRLEEAGKEVVRI 244 >gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii Dugway 5J108-111] Length = 446 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 41/289 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ G +F+A+ G D + FI +A QGA VV+ +++ P+ Sbjct: 25 VSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H ++ ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ + AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALV 317 G + K +T++ EG+ F + P G+ ++ L+ Sbjct: 237 FGINQPADVMAK--------NITLNSEGRPAFQLVLP-TGQLEIQLPLI 276 >gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3] Length = 474 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 76/348 (21%), Positives = 148/348 (42%), Gaps = 61/348 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ +++D+R++ +FVA+ G D HLF+ AI+ GA+A++V A + Sbjct: 27 IDAIATDTRNLAEQALFVALKGENFDAHLFLDNAISTGAKALLVEQASD---------HD 77 Query: 90 TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSS----VASFVQQICQ------ 138 ++VV +TR L ++ + K N +A+TG++GK++ +++ +++ CQ Sbjct: 78 IAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNGKTTCKELLSAVLREHCQDDSALL 137 Query: 139 -RSGLSSFQIGPTSTISSFAQDNRLTT-------PSPI-YLAK----ALSYLSSQGVTHV 185 +G + +IG T+ Q+ R P I Y A+ ++ +++ H+ Sbjct: 138 ATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGEINYTAQLVQPKVALINNIMAAHL 197 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 S G+ + + + + T + D+ QT + A+ + + A Sbjct: 198 EGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQTYLSQLQAQGQCIFTFSQTLAQAN 257 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLF 304 +AD + AH G +H+K +C Q +++ + Sbjct: 258 FFAD-----AIEFDAH---------GNANFILHVKTPICT--GTQSISLKI--------- 292 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 PG+ V NAL A + +A+G V + L +L V GR + N Sbjct: 293 --PGQHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVN 338 >gi|332978084|gb|EGK14822.1| tetrahydrofolate synthase [Desmospora sp. 8437] Length = 440 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 96/413 (23%), Positives = 154/413 (37%), Gaps = 87/413 (21%) Query: 113 HPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT------ 163 HPE L + GT+GK S A+ V + Q +G + +G S+ R+T Sbjct: 41 HPERRLKFIHIAGTNGKGSTAAMVASVLQEAG---YPVGMFSSPYLHHWGERITLDGEPI 97 Query: 164 ---------------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 TP + A+ Y + + V V + G Sbjct: 98 PEKSFVHWAGQVAQLVEEMDREGVGRVTPFEFWTLVAILYFAKEAVPWFVVWETGLG--- 154 Query: 197 HRLDGIKLI---AGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 RLD ++ TN+G DH +T K + + P + Sbjct: 155 GRLDSTNVVYPLVSVITNVGHDHTHILGETVTQIAGEKAGIIK-------PGVPVVTACE 207 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---------- 302 +E + VLS + K L ++ + + EG+ F F Sbjct: 208 EEEALS--------VLSTVAEEKQCRLYRLHREFDVVPRSGGEEGESFSFHNPFRPLERV 259 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-----PGRFEFVGTNSRGGR 357 PL GE QV N VA + A VLE + L + PGR E V S+ R Sbjct: 260 RIPLRGEHQVKNGAVALMTLEILRKYYATVLEETDVLAGMENVRWPGRLEQV---SQHPR 316 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 + +D AH E + + +R ++ R++++ D+D + K L L D +VT Sbjct: 317 VLLDGAHNPEGAEALARALRDLSCDRLLLLTAVLEDKDATG---ILKPLLPLVDRVMVTG 373 Query: 418 -DNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVVAG 466 D PR +P ++R E+ + +E G E +R +E ++D +VVAG Sbjct: 374 VDQPRGLEPARLR-EVAARLRPDLEIGQATGADEGLRRLLEEAGERDCIVVAG 425 >gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Listeria innocua FSL S4-378] Length = 394 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 44/300 (14%) Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------- 140 ++ P+++V+NT L A++ + ++A+TG++GK++ + I + + Sbjct: 15 TDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTG 74 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + IG TI + +D + + G+ H +H ++ Sbjct: 75 GNFNNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RHEIE 110 Query: 201 GIKLIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 + IA TN+G HI+Y +++ AK+ + L P S +IY + + + Sbjct: 111 VLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEENL 165 Query: 257 MKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + + R L+ G I+ ++ A + E D + P+ GE V+N Sbjct: 166 LLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNT 224 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374 + A IGI+ + L+ + R E++ T S G RI D Y + +L+ +LK Sbjct: 225 MAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALKTVLK 283 >gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum EG2] Length = 449 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 55/374 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I+ + DSR + +FV + G + DGH F QA +GA A S TI+ Sbjct: 22 ISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQAQEKGAIAAFWSHP--------TIQPP 72 Query: 90 TPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +++++ +T A K ++A+TG++GK++ V + + F+ Sbjct: 73 EGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKTTTKDMVDAVVAQQ----FKT 128 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHV-SVEASSHGLDQHRLDGIKL 204 T +N + P I A A + + G+ H +E SH L Q + I L Sbjct: 129 YKTQG----NHNNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSH-LAQPDVAAITL 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-------LPKESPAIIYADDAYSKEVM 257 I G HI+ +++ AKM + L +P + P + Y E+ Sbjct: 184 I-------GEAHIENLGSREGIAKAKMEITAGLDPAGFFMIPADEPLLT----PYLAELT 232 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 ++ G L G +LK ++Q +V D + P+ G + V NAL+ Sbjct: 233 QQVETFG---LGEG------NLKGTIQEETQEQTAFTV--ADQVYTIPVIGGYNVKNALI 281 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 A G+ +GI+ + L + R +++ + G I D Y ++ ++L + Sbjct: 282 AIGIGRYLGIEEEKIKAGLADFQLTKNRTQWLKA-ANGAAILSDVYNANPTAMGLVLDSF 340 Query: 377 RTIT-SGRIIVVFG 389 R + +GR I V Sbjct: 341 RKLPLTGRRIAVLA 354 >gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 7894] gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 112] Length = 289 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D/UW-3/CX] gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia trachomatis D/UW-3/CX] gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis G/11222] gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-EC] gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis D-LC] Length = 450 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +L V + R+ L A R YG+ ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152 >gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM 43021] gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM 43021] Length = 468 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 31/232 (13%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D + +A +++ R E + +I ADD S ++ A G +V++ Sbjct: 189 TNVEPDHLDNYGDPRAVYDSFARFVERV---GKSMVICADDPGSAALVPIARARGLKVVT 245 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + + + + + ++ +VEG+ + +PG NA + + +G+ Sbjct: 246 YG-EAEGADFRVSGILPDGLGISFAVEGRG-EVRLAVPGRHNALNATAVIAVAMELGVSF 303 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRI 384 + + L RFE G + G ++ YAH L L+ R + SGR+ Sbjct: 304 DEIRDGLAAFTGAKRRFEAKG-EAGGVAVFDSYAHHPTELAADLRAARDVVASFSGSGRV 362 Query: 385 IVVFGCGGDRDQGKRPIMGK----------IALDLADIAIVTDDNPRSEDPE 426 I VF +P + +AL LAD AIV D EDPE Sbjct: 363 IAVF----------QPHLYSRTRFFADEFGVALGLADEAIVLDVYGAREDPE 404 >gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter sulfurreducens KN400] Length = 470 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 20/258 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR ++ G +F+ + G + DGH ++ A A+G +V + + ++ Sbjct: 28 VSTDSRTVEPGELFIPLRGERFDGHDYLDAARARGVRLTLVERQWLA---GRQLPADVTC 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+T + L A+ + ++AVTG++GK++ + I R+G Sbjct: 85 IVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTTKEMLAAILARTG--------EGL 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212 + +N + P ++ LS + V + + S G + ++ G TN Sbjct: 137 KTEGNLNNLIGVPRMLF---RLSGVHRWAVLEIGM--SEFGEIDRLAEIVRPDVGIITNA 191 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272 H++ + + AK LF L P S A+ ADD + + G + +S G Sbjct: 192 YPAHLETLGSVEGVARAKGELFLRLEPGSS-AVYNADDPL---IARCPSPEGVKRVSFGL 247 Query: 273 QGKFIHLKKVCAIHNKQQ 290 +G + + V + K Q Sbjct: 248 RGGDVTAEDVENLGKKGQ 265 >gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 492 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 136/360 (37%), Gaps = 63/360 (17%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R+++ V+ DSR ++FV I G + DGH FIPQ + QG A+ S + L D Sbjct: 26 REVSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVMEQG--ALCTLSEHPLSD------ 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRS 140 + P ++V + + L A ++ ++G+ GK+S +AS ++Q + + + Sbjct: 78 -SFPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTSTKEMIASILEQKYSVLKTA 136 Query: 141 G---------LSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 G L+ FQI IS F + NRL + + L++ G H Sbjct: 137 GNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVA----QPDICVLTNIGQCH 192 Query: 185 VSVEASSHGLDQ-------HRLDGIKLIAG----SFTNLGRDHIDYHQTQQAYFNAKMRL 233 + G+ + HR G +I + + H Q Sbjct: 193 LENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKLSEIATVHAASFSKQDGTTVVPYSD 252 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 + A+ + D K HNA + S+G +G C IH Sbjct: 253 STHDETSAASAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKG------TSCKIH----- 301 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 DF + +PG VYNAL + I +G+ + +E L V GR + T Sbjct: 302 ---APAGDFTVIISIPGAHMVYNALAGTAVGIELGLTLDEIKTGIEALQPVAGRNHMIET 358 >gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum StLB037] Length = 470 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 90/369 (24%), Positives = 149/369 (40%), Gaps = 38/369 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR I+ G IFVA G DGHLF+ A+ +GA +V L D + I Sbjct: 33 VDTDSRLIEPGDIFVAKPGETTDGHLFVGTAVERGAALAIVE--RELDDPVSQI------ 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 VV + LS A + + E+ I+ +TG++GK++ + + +I G Sbjct: 85 -VVPDAVTALSDLARDVVARVREHGRLRIVGITGSNGKTTTKNLLARILSDEG------- 136 Query: 149 PTSTISSFAQ-DNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 T+S A +N + P + + + + +L S+ AS+ G H + Sbjct: 137 --ETVSPRASFNNEVGAPLTMLRVTEDTRFLVSE------FGASAPGAIAHLAGLVTPDV 188 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAG 264 G +G H ++ F AK L + A++ DD + E R Sbjct: 189 GVVLMVGMAHAGGFGGIESTFRAKSELVHATR-EGGLAVLNVDDPRVAAMEPFARERGQD 247 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R G + + V + + + V+G+ F + GE V NAL A A Sbjct: 248 VRWFGRGERAA-VRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNALAALATATA 306 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG- 382 +G+ +A + LE + + R+ S RI D Y + +S+ L+ + IT Sbjct: 307 LGVPAAEAIARLETVEIAE-RWRMQPLGSDRVRIINDAYNASPDSMAAALRTLAQITGPG 365 Query: 383 -RIIVVFGC 390 R + V G Sbjct: 366 ERTVAVLGA 374 >gi|255525853|ref|ZP_05392782.1| cyanophycin synthetase [Clostridium carboxidivorans P7] gi|255510496|gb|EET86807.1| cyanophycin synthetase [Clostridium carboxidivorans P7] Length = 871 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/353 (21%), Positives = 145/353 (41%), Gaps = 38/353 (10%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 L+ + +G T+T + + + A L ++ + +E + G+ + L Sbjct: 500 LAGYNVGMTTTGGIYVDNKCIEKGDTTGYNSARVILGNKEIDAAVLETARGGIIRKGLAY 559 Query: 202 IKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH ID +T + AY + L E + + +I AD+ S +++ Sbjct: 560 DLADVGVITNITEDHLGIDGIETIEDLAYVKS---LVAEAVKDDGYVVINADNPVSLKIL 616 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDF--------DFLFPLP 307 R + Y + K C I+ + TI VE ++ D + L Sbjct: 617 DRTKSNIIMFSKNKYNPALVKNIKQGGCGIYTNEG-TIYVEKQEKVVPMVKIQDVMITLN 675 Query: 308 GE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVD 361 G+ + + NA+ A I + I +++ + L + PGRF N G ++ +D Sbjct: 676 GKLTYNIENAMAACAALIGLNIKYSVIRKGLTSFYGDENYNPGRFNMYEIN--GVKVVLD 733 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 Y H + ++ + I R+I V G GDR +G+I+ D + +D R Sbjct: 734 YGHNIEGYKAVINGAKEIKHKRLIGVIGVPGDRTNSSTEYIGEISGKSFDYIYIKEDKDR 793 Query: 422 -----SEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464 E + I+ +++ GF E+ + EA++ AIE + D++++ Sbjct: 794 RGRKVGEIADIIKKGVVN--SGFNERKINVILDEKEALKKAIEDSVEGDLIII 844 >gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophobacter fumaroxidans MPOB] gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophobacter fumaroxidans MPOB] Length = 463 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 41/244 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S+D+R ++ F+A+ G + DGH FI A+ +GA +VV+S +R+ Sbjct: 25 VDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKGAAVVVVASGRG----EGAVRAG 80 Query: 90 TPILV-VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ--------RS 140 + +V VD+T L A ++ + +TG++GK+S + I + R Sbjct: 81 SVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTKELLAAILEHRHGILKNRG 140 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRL 199 L++ QIG T L T P + A + ++ G VE + L Sbjct: 141 NLNN-QIGVPLT---------LLTMDPTHEAAVIEMGINVPGEMARLVEIAGPTL----- 185 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKE 255 G TN+ H++ + K RL++ L E A++ DD AYSK Sbjct: 186 -------GLITNIQPAHLEGLGSLDGILKEKGRLWDA-LDAEGIAVVNLDDQRLRAYSKR 237 Query: 256 VMKR 259 + R Sbjct: 238 LAAR 241 >gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 463 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 47/271 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-----SP---- 167 +LA+TG++GK+SV + + I Q +G G T + ++N + P +P Sbjct: 63 VLALTGSNGKTSVKALLLSILQEAGRVD---GTTVYATPGNRNNEIGLPLAVLAAPDDAD 119 Query: 168 --IYLAKA-----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 IY A ++YL+ HV++ + RL + +A Sbjct: 120 VAIYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVA-------------- 165 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFI 277 QT+ A + A LP + A+I ADDA+ ++ ++ G RVL G Q Sbjct: 166 QTKGAIYAA--------LPADGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAE 217 Query: 278 HLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + +H Q T+ + PLPG V NAL A GL + GI ++ L Sbjct: 218 ITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGL 277 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + V GR + G + +D ++ +N Sbjct: 278 AQARPVAGR--QIAQTLPNGAVLIDDSYNAN 306 >gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM 2075] gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM 2075] Length = 458 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 7/182 (3%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ R+H+D++ + QA A + F +P AII DD ++ R RV++ Sbjct: 179 TNIDREHMDHYGSDQALDEAFVE-FMNKVPFYGAAIICLDDPRVAALIPRVRK---RVIT 234 Query: 270 VGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGI 327 G G+ ++V + ++ +G++ + PLPG V N L A + +G+ Sbjct: 235 YGQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGV 294 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIV 386 + + V R E G ++ G + DYAH + L+ R R++V Sbjct: 295 AMPVAMSACAGFGGVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWPDKRLVV 354 Query: 387 VF 388 F Sbjct: 355 CF 356 >gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei DM98] Length = 303 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinithermus hydrothermalis DSM 14884] Length = 427 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 147/372 (39%), Gaps = 81/372 (21%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G FVA+ G + G+ FI A+A+GA A+ L D R + + V Sbjct: 33 DSRQVTPGAAFVALPGTRTHGNAFIEDAVARGA-------AFVLTD-----RPHPKAVQV 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + + L L + P ++ VTG+ GK++ + Q ++ Sbjct: 81 QDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQ----------------GLAW 124 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215 A + L TP LA+ +L Q G+ LG D Sbjct: 125 PAPEGNLNTPP--ALARFFLHLPPQA------------------------PGAVVELGID 158 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA---GCRVLSVGY 272 + + Q+ F A+ + +L +PA + A S EV+ R + RV Sbjct: 159 RVG--EMQELVFLAQPTI--GVLTAIAPAHLEALG--SLEVVAREKSQLLQASRVRIAST 212 Query: 273 QG-KFIHLKKVC------AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAG 320 Q +++ L +V + +TI+ EG F + P PG AL A Sbjct: 213 QAARYLSLPEVRTYGFEEGTFQGRDLTITPEGTRFRYGQRTLHLPYPGYGPALGALAALA 272 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRT 378 + +G D V +HLE L + PGR V RGG +++ A+ +N S+ L+++ Sbjct: 273 VAEVLGQDLDQVCQHLEALRLPPGRMHLV---RRGGVLFIHDAYNANPASVRAGLESLDR 329 Query: 379 ITSGRIIVVFGC 390 GR IVV G Sbjct: 330 F-PGRKIVVLGT 340 >gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus mitis ATCC 6249] Length = 453 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 77/382 (20%), Positives = 142/382 (37%), Gaps = 65/382 (17%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +SIF + +I + DSR I G +FV + G + DGH FI A GA + Sbjct: 16 NDVSIF----EDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFENGAVVTLTEK 70 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + N P ++VD+ A+ K N+ AVTG++GK++ + Sbjct: 71 EVA----------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTKDMLAH 120 Query: 136 IC-------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G + +IG T+ D + G H+ Sbjct: 121 LLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTE-------------KLVLEMGQDHLG-- 165 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFE-----ELLPKES 242 D H L + + L G H+ + + + KM++ + LL + Sbjct: 166 ------DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA 219 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 I+ A K+V++ A + + I K +T + + D Sbjct: 220 DPIVEAYLPADKKVVRFGQGAELEITDL--------------IERKDSLTFNANFLEQDL 265 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 P+ G++ NA++AA + + G+ + + L + R E+ + G I D Sbjct: 266 DLPVTGKYNATNAMIAAYVALQEGVSEEQIRLAFQNLELTRNRTEWKKA-ANGADILSDV 324 Query: 362 YAHTSNSLEMILKNIRTITSGR 383 Y ++++IL+ I + + Sbjct: 325 YNANPTAMKLILETFSAIPANK 346 >gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 401 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 45/262 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V + +GL +F IG ++S + RL + Sbjct: 31 IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGSGE---------- 78 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKM 231 H+ VEA D L+ + ++A TN+ DH+ D+ + ++A+ + Sbjct: 79 -------HIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFGKLKKAFVD--- 125 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQ 290 F +P AI+ DD +++ ++ C + S G+ + + V A+ + Sbjct: 126 --FLHRMPFYGAAILCTDDPAVRDICEQVT---CPITSYGFNEDAEVRAVNVRAVGGQMH 180 Query: 291 VTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 T+ V D + + LPG V NAL A + + + I A V++ L + V RF Sbjct: 181 FTVQRRNGVVLPDMEVVLNLPGLHNVLNALSAIAVAVELNIPDAAVVKALAEFKGVGRRF 240 Query: 347 EFVGTNS--RGGRIYV--DYAH 364 + G + +GG + V DY H Sbjct: 241 QRYGDLALPQGGTVTVIDDYGH 262 >gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 437 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 44/256 (17%) Query: 119 AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175 A+TGT+GK+++ + + ++ + + + + IG P S + AL Sbjct: 107 AITGTNGKTTITTMLYEMLKYNKKAIVAGNIGWPLSEL-------------------ALK 147 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFNAKMR 232 Y + + V++E L +L GI+ A S + NL DH+DY + ++Y+ +KMR Sbjct: 148 YEAEE--KDVALE-----LSNFQLLGIEHFAPSVSVVCNLAPDHLDYMPSVESYYESKMR 200 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQV 291 +++ K+ + DDA V++ A N C V+ + + L +K A++ + Sbjct: 201 IYKN-CTKDDWFLRNVDDA---TVLQYAQNIPCTVIDFSLTRQDVDLYRKDGAVYLRD-- 254 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + E K F + G++ + NA++AA + +G+ + + + V R E++G Sbjct: 255 ILLFEEKSFHVV----GDYNLSNAMIAACMAYKLGVSVRDIQKAIASFQPVEHRLEYIGE 310 Query: 352 NSRGGRIYVDYAHTSN 367 + G + Y D T+ Sbjct: 311 KN-GVKFYNDSKATNT 325 >gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia sp. wRi] Length = 509 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 13/115 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R I+ G +F+A+ G DGH F+ +A +GA A +VS + F P Sbjct: 28 NISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSEG-KYKSF--------P 78 Query: 92 ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143 +++V +T K L AS Y ++ ++AVTG+ GK++ + + + G+S Sbjct: 79 LMIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132 >gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei B7210] Length = 297 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 9] Length = 298 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans SRS30216] gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans SRS30216] Length = 471 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 118/302 (39%), Gaps = 35/302 (11%) Query: 83 SATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 S+ +R+ P L+ R L A+ + G+ +AV GT GK++ +S + Sbjct: 84 SSAVRATNPELLAARERGVRVLHRSEALAALMAGR---AGVAVAGTHGKTTTSSMLAVAL 140 Query: 138 QRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 +GL S+ IG T + P +++ + S A + +D Sbjct: 141 TAAGLDPSYAIGGELTGGDDGGARDGSGP----------FVAEADESDGSFRAYAPVVDV 190 Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 TN+ DH+D++ T +A+ A + L P + ADD S + Sbjct: 191 ------------VTNVEPDHLDHYGTAEAFAAAFEEFVDRLQPG-GLLVACADDPGSAAL 237 Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 A G RV + G + L+ + V + G + +PGE V NA Sbjct: 238 AGHARGRGVRVRTYGASATADVRLRDLQPGAAASAVLVD-GGVPRELRLAVPGEHNVLNA 296 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A + +G D VLE L + RFE G + G R+ DYAH +E +L+ Sbjct: 297 AAAYCAAVELGADPVAVLEGLARFGGARRRFELKG-EAAGVRVVDDYAHHPTEVEALLRA 355 Query: 376 IR 377 R Sbjct: 356 AR 357 >gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 466 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/325 (21%), Positives = 141/325 (43%), Gaps = 27/325 (8%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFS 83 ++E I V++ S ++ +F+ + GN+ DGH FI A+++GA +V + + ++F Sbjct: 25 YKESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFD 83 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + R+ + V +T L A+ + ++AVTG+SGK++ + C L Sbjct: 84 SKERAKA--IPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGN-C----LK 136 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 + + P ++ +N + P ++ +S + V +H + RL I Sbjct: 137 NLE-EPVLVVTEKNYNNEIGLPFTLF------RISDRTRIVVCELGMNHKGEIARLTQIA 189 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAH 261 K T +G HI++ +Q+ AK+ + E L+ + + Y D YSK + Sbjct: 190 KPDFALITTIGTAHIEFLGSQKNIAKAKVEVAEGLV--KGGKLFYPDTGEYSKILKSTLR 247 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R++ + + ++ K+ +E +D + + LPG + N +A Sbjct: 248 RHGSRLI-------LVKPNHIFSVLQKRPSGFLLEYRDKEIEWNLPGYKLLENLAIAIAC 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRF 346 +G+ + +L+ + V R Sbjct: 301 LETVGVPTEWILKGISTFKSVDKRL 325 >gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21] gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21] Length = 463 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 111/442 (25%), Positives = 167/442 (37%), Gaps = 99/442 (22%) Query: 53 KEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL- 109 KE +FI A Q AE IVVS+A I + P LV + R + S + Sbjct: 50 KEGALVFIGHAACQIERAEVIVVSTA---------IHPDNPELVEAHKRGVPVIHRSDVL 100 Query: 110 -YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTP 165 Y + +AV G GK++ +S + I +G I PT + N + Sbjct: 101 AYLMNKHKGIAVAGAHGKTTTSSMLSLITCDNG-----IDPTVVVGGVVNNLGTNSVNGK 155 Query: 166 SPIYLAKAL----SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 S +A+A S+L + V TN+ DH+D++ Sbjct: 156 SDYVVAEADESDGSFLKFRPYLAV-----------------------ITNIENDHLDHYG 192 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281 T++ A + F + + ++ AI+ D+ ++V + V+S G K Sbjct: 193 TEEKIQEA-FQQFVDQVKEQGKAILCYDN---EKVRRVGEKTATEVISYGIDAK------ 242 Query: 282 VCAIHNKQQVTISVEGKDFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSAL 331 A + + + +G +D LF +PG V NAL A +G+ Sbjct: 243 -DADYRAENIEYGKDGTHYDILFRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEE 301 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + LEK RFE G RG + DYAH +++ LK R R+IVVF Sbjct: 302 ISRSLEKFTGAKRRFETKG-RVRGIWVVDDYAHHPTEIKVTLKAARQTQPKRLIVVF--- 357 Query: 392 GDRDQGKRPIMGKIALD-------LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444 Q R ++ LD AD IVTD SEDP IPG K Sbjct: 358 ----QPHRYTRTQLLLDEFAVAFKEADELIVTDIYAASEDP----------IPGISGK-- 401 Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466 + I+ QDV ++G Sbjct: 402 ---MLAETIQRTTGQDVSYMSG 420 >gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3] gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3] Length = 928 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 155/389 (39%), Gaps = 58/389 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS- 175 I A+TGT+GK++ + + I + SGL+ +G TST + D RLT + A Sbjct: 493 IAAITGTNGKTTTSRMLAHILKMSGLT---VGQTSTDGVYI-DGRLTVAGDMTGPTAAQI 548 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 L V +E + G+ + L + + N+ DH+ A+++ Sbjct: 549 VLRDPSVNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKRVV 608 Query: 236 ELLPKESPAIIYADDAYSKEV-------------MKRAH-------NAG--CRVLSVGYQ 273 + +++ A++ ADD + ++ M R+H AG VL G Sbjct: 609 VEVARDA-AVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGIN 667 Query: 274 GKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G I L HN + ++EG+ V NA+ AA L + ID Sbjct: 668 GGMITLYDEQG-HNIPLLWTHLIPATLEGRAM---------HNVQNAMFAAALAYHMHID 717 Query: 329 SALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGR 383 + + L PGR + ++ +DYAH +++M+ + R GR Sbjct: 718 LENIRQGLRTFDSTFFQSPGRLNVY--DKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGR 775 Query: 384 IIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442 IVV GDR D+ + G A DDN R +P ++ A + G+ Sbjct: 776 KIVVLTMPGDRRDEDIVEVAGIAAGHFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVP 835 Query: 443 GNRI-------EAIRTAIEMLNKQDVLVV 464 +RI EA + A++M D+L++ Sbjct: 836 EDRIQIIEREEEANQAALDMARGGDLLLI 864 >gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia aggregata IAM 12614] Length = 476 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 156/383 (40%), Gaps = 37/383 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I +S DSR ++ G FVAI G++ DGH ++ A+ GA +V L D A R Sbjct: 26 EITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAMEAGASVALVGED-RLPDLPADGR- 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +VVD+ + L + I+AVTG+ GK+ ++ SG Sbjct: 84 ---YVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTGTKEALRLTLAESGKVH---- 136 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 ++++SF +N P+ LA+ + + GV + + +H + L +K++ Sbjct: 137 --ASVASF--NNHWGV--PLTLAR-MPADADFGVFEIGM---NHAGEISPL--VKMVRPH 184 Query: 209 ---FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 T + H+ + + + AK +F+ L P AI+ D+ + A AG Sbjct: 185 VVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPG-GIAILNKDNLQFDLLKFLAAAAGV 243 Query: 266 -RVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ + G HL+K + V + G++ + G+ V N+L + Sbjct: 244 SKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLTAVV 303 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEM-----ILKNIR 377 +G D A L+ + GR E + G +D ++ +N M +L Sbjct: 304 DLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLGEAP 363 Query: 378 TITSGRIIVVFG----CGGDRDQ 396 GR I V G G D D+ Sbjct: 364 VTRPGRRIAVIGDMRELGSDADR 386 >gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella vestfoldensis SKA53] Length = 476 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R +Q G +FVA+ + DGH F+ A+ +GA A +VS + S+ P+ Sbjct: 27 VSIDTRTLQPGDLFVAL-KDVRDGHDFVAMALEKGAAAALVSHRPD------GVASDAPL 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV + K L + I A+TG+ GK+S ++ + R G Sbjct: 80 LVVPDVLKGLEALGIAARARSTARIAAITGSVGKTSTKEMLRTVLSRQG 128 >gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1] Length = 451 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 44/368 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 LA+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 LAITGTHGKTTTSSVLATLLCQLDKHSSFVVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQLDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 +G D F LPG++ V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKGDDLSFKLQLPGKYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPEALS 378 Query: 409 LADIAIVTDDNPRSEDPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463 LAD I+ P E+I +I G+ G++ AI ++ N+ V++ Sbjct: 379 LADQLILL---PTYSAGEQIIKGAESQDIAKGLSGYLLADGFDHAIYFLEKLANENTVIL 435 Query: 464 VAGKGHET 471 + G G T Sbjct: 436 IQGAGDVT 443 >gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Simonsiella muelleri ATCC 29453] Length = 459 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + IN + +DSR Q+G +FVA++G D H F+ +A+GA A+V S Sbjct: 20 LPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLAKGALALV-----SRD 74 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 DF + L VD+T L A + +TG+SGK++V + + + Sbjct: 75 DFVGV----SGCLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKTTVKEMLATVLRE 129 >gi|262038067|ref|ZP_06011472.1| tetrahydrofolate synthase [Leptotrichia goodfellowii F0264] gi|261747887|gb|EEY35321.1| tetrahydrofolate synthase [Leptotrichia goodfellowii F0264] Length = 426 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 78/327 (23%) Query: 109 LYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLT 163 L GK +N I+ + GT+GK S ASF++ I +G S + + D ++ Sbjct: 31 LLGKPCKNNKIIHIAGTNGKGSTASFIENILTAAGYSVCKFTSPHILKYNERIVSDKKMI 90 Query: 164 TPSPIYLAK-----------------------------ALSYLSSQGVTHVSVEASSHGL 194 T I AL Y Q + +E G Sbjct: 91 TNEEILQNYSIIKGTVSNYNKSGSNEINLNFFEITTFIALLYFQKQNPDFIVLETGLGG- 149 Query: 195 DQHRLDGIKLIAGSF---TNLGRDHIDY--HQTQQAYF-------NAKMRLFEELLPKES 242 RLD ++ + TN+ DH++ + QQ + N ++ ++ + LP+ Sbjct: 150 ---RLDATNIVDSNISVITNITFDHVNILGNTLQQIAYEKAGIIKNGELCIYSDNLPELK 206 Query: 243 PAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 I D SK V+++ N + Y K V NK+ Sbjct: 207 KEI---DKKTSKAINVIEKYKNIEIELDKKNY-------KTVLYFENKR----------- 245 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 F+ PL G+FQ YN L+A + I ++ + L+ ++ P RFEF S+ I + Sbjct: 246 -FILPLFGKFQAYNFLIAYEIAKIYNIHDKVIQKGLDNVY-WPARFEFY---SKNPTIIL 300 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387 D AH +S++ + +N++ + +++ Sbjct: 301 DAAHNDDSIKKLSENLKELYKKNEVII 327 >gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653] gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653] Length = 857 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/377 (20%), Positives = 156/377 (41%), Gaps = 40/377 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V V I + G + +G T+T + D + A + Sbjct: 458 IVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSARTC 514 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID T + A+ A Sbjct: 515 LADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA--- 571 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----VCAIHN 287 L E + + +++ ADD + + K+A +++ + +K+ A++ Sbjct: 572 LVVEAVKDDGYSVLNADDPMTPYLAKKAKG---KIIYFSMYDNNLTVKRHIENGGIAVYV 628 Query: 288 KQQVTISVEGKDFDF--LFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K+ V + G+ + +P + N+L A + + ++ + ++ Sbjct: 629 KEGVIVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTF 688 Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 + PGRF S R+ VDY H ++ +++ R + + R+I V G GDR Sbjct: 689 YPDTTHNPGRFNLFNIGSF--RVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRM 746 Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN------RIE 447 +G++ D + +D + A+I+ I G ++K N E Sbjct: 747 DSSIFKVGEVCGKGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETE 806 Query: 448 AIRTAIEMLNKQDVLVV 464 A++ A+ D++VV Sbjct: 807 ALKAAMHSAEAGDLIVV 823 >gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium glucuronolyticum ATCC 51866] Length = 514 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 59/315 (18%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA-----------IVV--SSAYSL 79 V DSR++ AG +F+ + G + DGH F A+ QGA A I+V S A L Sbjct: 31 VEFDSRNVSAGSLFICLPGARVDGHDFAGIAVDQGAVACLEGHRTGQPGILVDNSDADEL 90 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPE--------NILAVTGTSGKSSV 129 D SAT + +L DNT + ++ S+L H + ++ VTG++GK+S Sbjct: 91 SD-SAT----SYVLEADNTGEGQAVITALSKLARAHTKKAVEENGLTVIGVTGSAGKTST 145 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVE 188 + + +++G + + P + +N L P + + + + +YL V+ +S Sbjct: 146 KDLIASVLRQAGET---VAPPGSF-----NNELGHPYTALKVGEHTTYL----VSELSAR 193 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AII 246 A + R+ ++ G+ N+G HI +++ AK L E L P A++ Sbjct: 194 AIGNIAHLARIAPPRI--GAVLNVGTAHIGEFGSKENIAQAKGELVEALPPAADGGVAVL 251 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY------QGKFIHLKKVCAIHNKQQVTISVEG-KD 299 ADD V+ + R+++ G + + + L V + T+ +EG K Sbjct: 252 NADDPL---VIGMRNRTSARIVTFGMDNPATVRAEDVELDAVA----RAAFTLCIEGEKA 304 Query: 300 FDFLFPLPGEFQVYN 314 + G QVYN Sbjct: 305 RRIQLRVFGRHQVYN 319 >gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces violaceusniger Tu 4113] gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces violaceusniger Tu 4113] Length = 483 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 35/211 (16%) Query: 62 QAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + + +G E IV + + F A +N PI A RL G+ LA Sbjct: 72 ETLPKGTELIVTTPGWKPTSPLFLAAAEANVPIW-------GDVELAWRLRGEDAPPWLA 124 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTGT+GK++ + I + +GL + +G I ++ L Sbjct: 125 VTGTNGKTTTVRMLAAILEAAGLRTAAVGN------------------IGVSLLDIVLGD 166 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + ++VE SS+ L H ++ +G+ NL DH+D+H + AY K R++E Sbjct: 167 EPYDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE---- 220 Query: 240 KESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 A +Y AD A V GCR + Sbjct: 221 GNQVACVYNVADPATEDLVRAADVEEGCRAI 251 >gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella suis bv. 4 str. 40] Length = 481 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 37/374 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR ++ G F AI G + DGH F A+A GA +VV+ + L F T Sbjct: 32 VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVVAE-HRLPAFGNT---K 87 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV++ + L + I+AVTG+ GK++ ++ + G Sbjct: 88 VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVH----- 142 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +SF +N P+ LA+ + + GV + + + HG + + + Sbjct: 143 -ASAASF--NNHWGV--PLTLARMPADV-DYGVFEIGM--NHHGEIRPLVKMVCPHVALI 194 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + H+ + + AK +FE ++P A++ DD +++ + A AG ++ Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEGIVPG-GYALLNRDDKRFRQLQELAEKAGVEHIA 253 Query: 270 V-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 Y+ + + L C+ +T+ + + +PG V N L G Sbjct: 254 TFGENARADYRLRDVKLHPTCSC-----MTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAA 308 Query: 323 IAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSN------SLEMILKN 375 +G D A V+ + L GR V + G +D ++ +N +L ++ Sbjct: 309 HLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHST 368 Query: 376 IRTITSGRIIVVFG 389 + + GR I V G Sbjct: 369 VPEGSRGRRIAVLG 382 >gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium medicae WSM419] Length = 477 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA +V Sbjct: 9 DLLGAMNGRPVGNLPEGITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIALANGAALLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 69 VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSG 141 ++ + G Sbjct: 125 LRHMLSPLG 133 >gi|289579519|ref|YP_003478146.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9] gi|289529232|gb|ADD03584.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9] Length = 876 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 82/374 (21%), Positives = 155/374 (41%), Gaps = 34/374 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234 L+ + + +E + G+ + L G TN+ DH ID +T + K L Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVK-SLV 595 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQ 290 E + ++ +++ ADD + + +RA G + Y K V A++ K Sbjct: 596 VEAVKEDGYSVLNADDLMTPYLAQRAK--GKVIYFSMYDNNLTVKKHVEKGGIAVYVKDG 653 Query: 291 VTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 654 VIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCD 713 Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 714 TTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSS 771 Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG-IPGFIEKG------NRIEAIR 450 +G+I + D + +D + R P ++ + G I G +++ EA++ Sbjct: 772 ILKVGEICGEGFDFIYIKEDVDLRGRKPGEVAKILEEGAIKGGMDRKKIKIILKETEALK 831 Query: 451 TAIEMLNKQDVLVV 464 A+ D++VV Sbjct: 832 AAMYHAEAGDLIVV 845 >gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp. m3-13] Length = 449 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 39/271 (14%) Query: 144 SFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEASSHGLDQH--- 197 ++QI I + + TT + I A S L + + +VSVE + ++ Sbjct: 106 AYQISEAPIIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGNVSVEVAQQATEKDIMV 165 Query: 198 -RLDGIKLIAGS--------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 L +L+ F NL H+DYH T Y AK ++F KE A++ A Sbjct: 166 TELSSFQLMGTDIFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFN-QTKEDYAVVNA 224 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 DDA +VMK + ++ G ++ VC K + IS++ Sbjct: 225 DDA---QVMKLSEGIQPTIVPFSTNKTVDGAYLKDNYVCF---KDEKIISIDQ------I 272 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364 LPG+ + N L A G+ + ++E L + V R +F+G R GR + + + Sbjct: 273 VLPGKHNLENILAAVAAVKLSGVSNEAIIEVLTRFSGVKHRLQFIG--ERDGRRFYNDSK 330 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 +N IL + +++ VV GG DR Sbjct: 331 ATN----ILATQKALSAFENNVVLLAGGLDR 357 >gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii ATCC 33806] Length = 496 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 29/241 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-----------AIVVSSAYSLQD 81 V DSR + +G +FVA+ G K DGH + A+ QGA A++V A + Sbjct: 30 VEFDSRKVASGDLFVALSGVKVDGHDYAATAMDQGAAGVLAARPVGVPAVIVPPATEVDH 89 Query: 82 FSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 S +T V++ K +L + ++ +TG++GK+S V I + Sbjct: 90 HSYATEHDTDGSVAAVLEGMAKLARHVVDKLSAR-GLTVIGITGSAGKTSTKDIVHTILE 148 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G + G + T + YL +S S + H++ A H Sbjct: 149 LAGDTVAPPGSFNNEIGHPYTALRCTETTKYLVSEMSARSIGNIAHLAAIAPPH------ 202 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 G N+G H+ ++ AK L E LP + A++ ADD Y + Sbjct: 203 -------IGVVLNVGTAHMGEFGSRDNIARAKGELVEA-LPADGIAVLNADDDYVAAMAD 254 Query: 259 R 259 R Sbjct: 255 R 255 >gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida GB-1] Length = 455 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 L+V + R L + + ++A+TG+SGK++V + I + GL Sbjct: 80 LLVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129 >gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis FSC198] gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. tularensis FSC033] gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis FSC198] gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp. tularensis FSC033] gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp. tularensis NE061598] Length = 451 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 144/367 (39%), Gaps = 42/367 (11%) Query: 118 LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT GK++ +S + + CQ SSF +G + +A N Sbjct: 106 IAITGTHGKTTTSSVLATLLCQLDKYSSFIVGG---VVKYADSN---------------- 146 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + G + +EA L +I TN+ DH+ T + + F + Sbjct: 147 IQVNGTDKLVIEADESDASFLFLSPQVVI---ITNIDLDHM---ATYNNSYQTLLENFTD 200 Query: 237 LLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI 293 + KES IY DD ++++ + + + V S G+ + + I I Sbjct: 201 FVSKESVKSIYLCVDDQGCRDLLAKYNQSDKNVTSYGFSINADVQIYDYHIIDEITHFKI 260 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 + D F LPG + V NA C+ +G + L K+ V RF+ Sbjct: 261 RYKDDDLSFKLQLPGRYNVQNATACIIACLDLGFKYEDIRNALIKVTGVARRFDLYTKVI 320 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALD 408 G ++ V DY H + + +R + +II VF R R ++ AL Sbjct: 321 SGHQVTVIDDYGHHPVEVANSISAVRDRYPNKKIIHVF--QPHRYTRNRDLIKDWPKALS 378 Query: 409 LADIAIVTDDNPRSEDPEKIRA----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 LAD I+ S D + I+ +I+ G+ G++ AI ++ N+ V+++ Sbjct: 379 LADQLILLP--TYSADEQIIKGAESQDIVKGLSGYLLADGFDHAIYFLEKLANENTVILI 436 Query: 465 AGKGHET 471 G G T Sbjct: 437 QGAGDVT 443 >gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 450 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/403 (22%), Positives = 166/403 (41%), Gaps = 56/403 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I S +S+ I +F+ + GNK DGH FI +AI++GA + + + Sbjct: 25 IESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGAISFITQK-------DVNTEKS 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQIC-------QRSG 141 P L V++T K + + A K + I + +TG+ GK++ +V + + G Sbjct: 78 CPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKTTTKEYVFNVLSNKFRSYKNEG 137 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VTHVSVEASSHGLDQHRLD 200 + IG +I L P + +A +S+ G ++ +S A + Sbjct: 138 NFNNHIGLPYSI--------LNIPDEVKVATLEMGMSNFGEISFLSKIAKPN-------- 181 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 G TN+G HI+ +T+ F AK + ++ +P + II D+ + Sbjct: 182 -----IGIITNIGVAHIENLKTRYNIFLAKSEI-QDGMPNDGILIINNDNDI---LYSHR 232 Query: 261 HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 H +V++VG + K + + N +S + + +YN+L A Sbjct: 233 HELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVS----NHKYFIESFNFHDIYNSLFAI 288 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +GI+ + + + K + RFE + + G VD ++ +++ M + I + Sbjct: 289 AVGEILGIEKEAIEKGILKKCGLRRRFEVI---KKDGLTVVDDSYNASTHSM-MSAINGV 344 Query: 380 T--SGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVT 416 SG+ I+V G G +Q R + I D+ I T Sbjct: 345 CGFSGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICT 387 >gi|297545642|ref|YP_003677944.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843417|gb|ADH61933.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 876 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 132/320 (41%), Gaps = 26/320 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLF 234 L+ + + +E + G+ + L G TN+ DH ID +T + K L Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVK-SLV 595 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNKQQ 290 E + ++ +++ ADD + + +RA G + Y K V A++ K Sbjct: 596 VEAVKEDGYSVLNADDPMTPYLAQRAK--GKVIYFSMYDNNLTVKKHVEKGGIAVYVKDG 653 Query: 291 VTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 654 VIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCD 713 Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 714 TTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSS 771 Query: 399 RPIMGKIALDLADIAIVTDD 418 +G+I + D + +D Sbjct: 772 ILKVGEICGEGFDFIYIKED 791 >gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida W619] Length = 455 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 8/109 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVGAGELFVALAGPRFDGHDYLADVQAKGAVAALVEREVANVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV ++R L + + + ++A+TG+SGK++V + I + G Sbjct: 80 LVVADSRLALGQLGALNRAGYDKPVVAITGSSGKTTVKEMLACILRTRG 128 >gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia massiliae MTU5] Length = 449 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/384 (21%), Positives = 156/384 (40%), Gaps = 71/384 (18%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN+ DGH ++ AI +GA A+++S + D Sbjct: 23 NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEIND-------KY 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 I++VD+ + L A +A+TG+ GK+S ++ Q G Sbjct: 75 KIILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNF 134 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + ++G ++S A D T I+ G+ H G + + +K Sbjct: 135 NNKLGMLINLASMADD----TEYAIF---------ELGMNH-------KGEIRELVQILK 174 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-DAYSK--EVMK-- 258 TN+ H+++ + + AK +F K A+I AD + Y+K ++K Sbjct: 175 PNIAMITNISEAHLEFFNSLEEIAEAKCEIFAN-FSKNDIAVINADTNCYNKILSILKNL 233 Query: 259 ---------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308 R+ ++ G+ ++LK + K D P +P Sbjct: 234 SITDIHSFGRSSKTSAELILYENLGEQVYLK------------YKINNKVLDVTIPFIPR 281 Query: 309 EF-QVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 F + Y ++ L I I G D + HL + GR E + N + R+ DY + S Sbjct: 282 HFTENYTGVL---LIIDILGKDIEIAANHLANISPTKGRGEMI--NIQNCRVICDYYNAS 336 Query: 367 -NSLEMILKNIRTITSGRIIVVFG 389 S++ L+ ++ + + + G Sbjct: 337 PQSMKAALEYLKQVPAENKTAIIG 360 >gi|146299078|ref|YP_001193669.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Flavobacterium johnsoniae UW101] gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101] Length = 822 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 42/331 (12%) Query: 30 INEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++ +S DSR +Q G +F+A+ G D HL+I + I +G + +++Q ++ Sbjct: 25 VDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEKGVQ------NFAVQYIPENVK 78 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 VV NT K L A+ I+ +TG++GK+ V ++ +F + Sbjct: 79 GKANFFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVKEWL----------NFLL 128 Query: 148 GPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 P I S + ++++ P + A++ + G+ + + ++ ++ IK Sbjct: 129 SPDYNIIRSPKSYNSQVGVPLSVI---AINEKHNLGIFEAGISTVNEMVNLEKI--IKPN 183 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHN 262 G TN+G H + + N K+ LF K+S IIY + + + + Sbjct: 184 IGVLTNIGSAHDEGFENLTQKINEKLLLF-----KKSAVIIYQKNELVDKCLLDFSAQYP 238 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKD--FDFLFPLPGEFQVYNAL 316 R L + F I K+ TI + KD F+ P + NA+ Sbjct: 239 LENRAL---FSWSFADASADVFILKKETKNDSTTIKYQYKDEIFNLEIPFSDSASIENAI 295 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + + D ++ +E L+ V R E Sbjct: 296 SCLLVLLHFEYDFTIIQNRMEMLYPVEMRLE 326 >gi|168182271|ref|ZP_02616935.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum Bf] gi|182674522|gb|EDT86483.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum Bf] Length = 873 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 91/357 (25%), Positives = 148/357 (41%), Gaps = 47/357 (13%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIKAGLPY 560 Query: 202 IKLIAGSFTNLGRDHI---DYHQTQQ-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ D + + AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGDINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASINII 617 Query: 258 KRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300 R + + L + G I+LKK+ NK + I+V Sbjct: 618 NRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH---VVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE + PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFNNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAI 414 + +DY H +++L++I+ I RII V G GDR +G I + D I I Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIYI 787 Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI-----EAIRTAIEMLNKQDVLVV 464 D + R +I + GI GF I EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKDGEIVDLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPGDLVIM 844 >gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter sp. Nb-311A] Length = 465 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 25/291 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 IN +S DSR I G + AI G+ DGH F+ A+ GA VV +A Q F+A + Sbjct: 17 INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAVVEAAQRDQ-FAA----D 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+L+VD+ L A + ++AVTG+ GK+S ++ + G + Sbjct: 72 APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVVDAQGKTH----- 126 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 ++++SF +N P + A + + G+ H G + ++ Sbjct: 127 -ASVASF--NNHWGVPLSLARCPADARFAVFEIGMNHA-------GEITPLVKMVRPHVA 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266 T + H+++ +A +AK +FE + P + ++ D+A + RA G R Sbjct: 177 VITTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGA-VVLNRDNAQFARLHGRAKKLGIAR 235 Query: 267 VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 ++S G K A+H V + G + + +PG N+L Sbjct: 236 IVSFGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSL 286 >gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus sp. SIP3-4] Length = 457 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 143/353 (40%), Gaps = 42/353 (11%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 M+L +L EL+ + +F V +DSR+I G +F+A+ G + DGH ++ Sbjct: 2 MRLSELAAAVGGELVGEDVLF---------TSVGTDSRNIVPGQLFIALRGERFDGHAYV 52 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 QA+ GA A +V+ A +A + VV NTR L A+ + + A+ Sbjct: 53 LQALQSGAAAALVAEAQP--GMAAGV-------VVKNTRLALGQLAAVWRNRFSIPVAAI 103 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TG++GK++V V I + S + +T + D L ++ Sbjct: 104 TGSNGKTTVKEMVASILRAEAGDSNAV--LATRGNLNNDIGLPLTLLRLRPSHKYTVAEM 161 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G+ H L Q + L+ N H+ + + AK +FE L Sbjct: 162 GMNHFG---EIRYLSQMARPTVALV----NNATSAHLGGLGSVEGIARAKGEIFEG-LAL 213 Query: 241 ESPAIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 E A+I ADD Y+ + A H+ +L+ G + V A + + T V K Sbjct: 214 EGMAVINADDLYAPLWTELAGEHD----ILTFG----LAKMADVTANYELRADTSYVYMK 265 Query: 299 D----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 F + G V NAL A+ + IA+G + + LE V GR + Sbjct: 266 SPIGGIAFNLQVAGLHNVRNALAASTVAIAMGARPESIAKGLEAFDGVDGRLQ 318 >gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia pseudomallei 14] Length = 272 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 L V +TR L A + ++AVTG++GK++V + I Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASI 124 >gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis PHE/MN1-00] gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis PHE/MN1-00] Length = 453 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 8/180 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+DY+++ + +A + F +P ++ DD + V+ R + +V++ Sbjct: 179 TNIDLDHLDYYRSFEEIEHAFVT-FMNNVPFYGMNVVCGDDPGVQRVLPRVNR---QVIT 234 Query: 270 VGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G++ ++ C I N+ +V E + + PG+ + NAL A G+ + +GI Sbjct: 235 YGFESSNHIWAEIIECGIINRFKVIAHGECLG-EVILTQPGKHNILNALAAIGVALEVGI 293 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +E L V RFE+ G + G + DY H + L+ R + R IVV Sbjct: 294 SPKCCIEGLANFKGVGRRFEYKGEKN-GITVIDDYGHHPIEVAATLETARKVFPDRRIVV 352 >gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK330] Length = 456 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 92/383 (24%), Positives = 160/383 (41%), Gaps = 64/383 (16%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + DSR I++G +FV + G + DGH FI A AQGA A + Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERP------- 71 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC------ 137 + T ILV D FL L A K ++LAVTG++GK++ + Q+ Sbjct: 72 --VAEGTYILVDDVLTSFLRL-AQYYLEKMQVDVLAVTGSNGKTTTKDMLAQLLATTYKT 128 Query: 138 -QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 + G + +IG T+ +D + G H+ D Sbjct: 129 YKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG--------DI 167 Query: 197 HRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 H L + K G T +G H+++ ++ KM++ + L K+ I+ AD + Sbjct: 168 HLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGL-RKDGLLIVPAD-----K 221 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEF 310 ++ A C+++ G I L ++ +++ ++S E +FL P+ G++ Sbjct: 222 IVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLPVTGKY 273 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSL 369 NA++AA + GI A + + +L + R E+ + G I D Y ++ Sbjct: 274 NATNAMIAAYAALQEGISEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNANPTAM 332 Query: 370 EMILKNIRTITS---GRIIVVFG 389 +IL+ TI + GR + V Sbjct: 333 RLILETFSTIPTNLGGRKLAVLA 355 >gi|237739356|ref|ZP_04569837.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31] gi|229422964|gb|EEO38011.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 2_1_31] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265 TN+ DH+D H N K E +L + +II D SK +M K Sbjct: 173 TNIDADHLDVHGNLD---NIKKSFIEFILHTQKESIICMD---SKNLMDAILKLPEGKSV 226 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ + I+ K + + K +V ++ E K +F +PGE + N+L L + Sbjct: 227 TTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374 G++ + E L + R++ + G+ ++ RI DYAH ++ LK Sbjct: 286 KFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIKATLK 345 Query: 375 NIRTITSGRIIVVF 388 I+++ S R++ +F Sbjct: 346 AIKSVDSSRLVAIF 359 >gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium accolens ATCC 49725] Length = 509 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 44/258 (17%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-------------- 72 ER V DSR + +G +FVA+ G + DGH F +AI QGA A++ Sbjct: 25 ERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVAVLAARPVGVPAIIVKP 84 Query: 73 ---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 V+ + D A + V+ SRL + +I+ VTG++GK+S Sbjct: 85 QGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQGLDIVGVTGSAGKTST 144 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTH 184 + I + G + + P + +N + P ++ +S++G+ H Sbjct: 145 KDLLATIFRAEGET---VAPPGSF-----NNEVGLPYTALRCDEHTRFLVAEMSARGIGH 196 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 + +H + G N+G H+ +++ AK L E LP + Sbjct: 197 I----------RHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELI-EALPAAADG 245 Query: 244 --AIIYADDAYSKEVMKR 259 A++ ADD + + R Sbjct: 246 GVAVLNADDPFVASMAPR 263 >gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Nocardioidaceae bacterium Broad-1] Length = 468 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 33/220 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R G +FVA G DGH + PQA GA A++ S +L P +VV Sbjct: 27 DGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVAVLGSRPTTL-----------PTVVV 75 Query: 96 DNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152 D+ + L A+ + + ++A+TG+ GK+S ++ + LSS PT +T Sbjct: 76 DDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKDMIEAV-----LSSAA--PTVAT 128 Query: 153 ISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 SF +N L P + A A + + G H+ A GL + T Sbjct: 129 SGSF--NNELGVPLTMLRADATTRFLVLEMGARHIGDIAELTGL-------VAPDIAVVT 179 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 N+G+ H+ +++A AK L L + A+++ADD Sbjct: 180 NVGQAHLGEFGSREAIAVAKSELVRGLAGGGT-AVLHADD 218 >gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium cylindroides T2-87] Length = 436 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 40/272 (14%) Query: 119 AVTGTSGKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 AVTGT GK++V + + ++ + L + IG TP L+ Sbjct: 106 AVTGTDGKTTVTTLLYEMLNAKEKALVAGNIG---------------TP-----LSELAL 145 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + +V++E S+ L +D + TNL DH+DY + + Y+ +KM +++ Sbjct: 146 IHQEETFNVALELSNFQL--LGIDTFQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYKN 203 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 + I DD + ++K A N C+V++ + K + K ++ + Sbjct: 204 -CNSQDWFIRNIDD---ENIVKYAQNIPCQVINFSLTQEADLYKDDTFAYLKDEILFKLS 259 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + G+F NA++AA + +GID + + V R E+V T G Sbjct: 260 D------LKIVGDFNCGNAMMAACMAYKMGIDLETIQSVIRSFKGVEHRIEYVNT-INGV 312 Query: 357 RIYVDYAHTSN-----SLEMILKNIRTITSGR 383 R Y D T+ +L KN+ + G+ Sbjct: 313 RFYNDSKATNTHAACAALSAFDKNVILLCGGK 344 >gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma proteobacterium HTCC2143] Length = 452 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 168/391 (42%), Gaps = 48/391 (12%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E + V +D+R + G +FVA+ G+ DG+ F+ A+ GA A + S A Sbjct: 19 FGEASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSDAVIAGAVAAITSEA-------- 70 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLS 143 + + P + VD+TR L A + ++A+TG++GK++ V +I C+R + Sbjct: 71 -VTAAIPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKTTTKEMVARILCERGEV- 128 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +T ++F +N + P + L+ S V + AS G + + Sbjct: 129 ------LATEANF--NNEIGVPLTL-----LAIDPSHQFAVVEMGASHIGDIAYLTQFAE 175 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN HI+ + +A K +FE LP+ AII D+ + ++ +++A A Sbjct: 176 PTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFEN-LPEGGVAIINQDEPFFQQWLQQAGKA 234 Query: 264 GCRVL-----SVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 S Y IH++ V +H QQ TI+++ L GE V N Sbjct: 235 SVVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQ-TITIK-------LALLGEHNVLN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A+ AA + G V + LE + V GR + ++R + D + S M Sbjct: 287 AVAAAAAAMTAGATVDDVKKGLESVRPVDGRLKASADSNR--TVIDDTYNASPGSVMAAI 344 Query: 375 NIRTITSGRIIVVFGC----GGDRDQGKRPI 401 ++ + SGR ++ G GG ++ R + Sbjct: 345 DVLSGFSGRRCLILGTMAELGGLAEKSHRDV 375 >gi|46446265|ref|YP_007630.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Candidatus Protochlamydia amoebophila UWE25] gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila UWE25] Length = 841 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 20/145 (13%) Query: 30 INEVSSDSRHIQA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT--- 85 I+++ DSRH+ + +FVA+ G K+DGH F+ QA GA+ +VS ++ F+ Sbjct: 25 IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWT-PPFNLKPIF 83 Query: 86 -IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------IC 137 ++ +P+ + K A RL + P I+ +TGT GK+ V + Q +C Sbjct: 84 LLKVKSPLSALQEVAK-----AYRL--QLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVC 136 Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL 162 G + QIG ++ + +D L Sbjct: 137 ASPGSFNSQIGVALSLLTIQKDQEL 161 >gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Exiguobacterium sp. AT1b] Length = 434 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/414 (21%), Positives = 160/414 (38%), Gaps = 76/414 (18%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ER + V++DSR +FV IVG + DGH +I A+ +GA D Sbjct: 20 ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPD----- 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR------- 139 N ++ V +T + L A+R + ++A+TG++GK+S V + + Sbjct: 75 --NLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKT 132 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTT----PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 +G + +G T+ +D + + + LS L+ V V+ SHG Sbjct: 133 AGNFNSDVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSKLAKPDVAFVTNIGESHGEQ 192 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPKESPAIIYADDA 251 G T + + ++ +A A RL E LL + + Y + A Sbjct: 193 ----------VGGRTGIAKAKLEI----KAGLKADGRLIVDADEPLLSGQGYRVGYDETA 238 Query: 252 YSK-EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 K EV++ +A Y G LK + G Sbjct: 239 DGKIEVIETTFDASI----FKYNGDLYELKVL-------------------------GAH 269 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 Q+ NA A +A G+D A++ L+++ + R E G ++ A+ ++ Sbjct: 270 QIRNAAYAIACGLAFGLDHAMIQRGLDRIKLTSMRME---KQMFGEAHLINDAYNASPTS 326 Query: 371 MI--LKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 MI ++ I+++ S R++V+ + G D + G + + D +V D Sbjct: 327 MIAAIETIKSLEGFSKRVLVLGDMYELGADEQMQHEQVGGAVTSPVTDCILVGD 380 >gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio coralliilyticus ATCC BAA-450] gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio coralliilyticus ATCC BAA-450] Length = 441 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 57/287 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + +G+ + A + P AL Sbjct: 112 VVAITGSNGKSTVTDLTGVVANAAGVKT------------AIGGNIGVP-------ALEL 152 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L +V +E SS L+ + L A +F NL DH+D + + Y AK+R+FE+ Sbjct: 153 LDQDAELYV-LELSSFQLETTS--SLSLKAAAFLNLSEDHMDRYDDMEGYRQAKLRIFEQ 209 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 I+ ADD + K A L+K C H K VE Sbjct: 210 ----AQTCIVNADDPATYPDKKDAPLVE------------FSLEKSCEFHVK-----VVE 248 Query: 297 GKDF-----------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 G+++ D L L G V NALV L G+D +L ++ L+ + + R Sbjct: 249 GREYLCHQDAKILASDEL-SLVGRHNVANALVVLALLEQAGVDISLGIDALKSYNGLTHR 307 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392 + V N+ G +V+ + +N + SG++ ++ G G Sbjct: 308 CQVVADNN--GVKWVNDSKATNVASTLAALSGLSLSGKLYLLVGGDG 352 >gi|332670128|ref|YP_004453136.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484] gi|332339166|gb|AEE45749.1| UDP-N-acetylmuramate/alanine ligase [Cellulomonas fimi ATCC 484] Length = 474 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 147/382 (38%), Gaps = 67/382 (17%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSG 125 A+ +VVSSA +R + P L R L S + +AV G G Sbjct: 67 ADTLVVSSA---------VRESNPELAAARARGLRVLHRSEALAALMADRDAVAVAGAHG 117 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ ++ +G SF IG T A P ++A+A S+L+ + Sbjct: 118 KTTTSAMAATALLHAGADPSFAIGGTVLTVDGALGGSRDGRGPAFVAEADESDGSFLAYE 177 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V TN+ DH+D++ +++A+ +A + + P Sbjct: 178 PLVAV-----------------------VTNVEPDHLDHYGSREAFEDAFVAFVRRVRPG 214 Query: 241 ESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISV 295 + ADD + +++ AG RV++ G G + + + V ++ Sbjct: 215 -GVLVACADDEGAARLVETAAADLAAAGVRVVTYGRSAGAEVRVGEQRPADGGWDVDLTT 273 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + +PG +A A A+GI + L RFE GT G Sbjct: 274 DATTVTVHLAVPGTHNALDAAAAWAAVRALGIPAEEAARALGAFRGTGRRFEDRGTAG-G 332 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGK---------- 404 R+ DYAH + +L+ RT+ GR++V+F +P + Sbjct: 333 VRVVDDYAHHPTEVAALLRAARTVAGDGRVLVLF----------QPHLYSRTRTFAREFG 382 Query: 405 IALDLADIAIVTDDNPRSEDPE 426 ALDLAD+A+VTD EDP+ Sbjct: 383 AALDLADVAVVTDVYAAREDPD 404 >gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5] gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16] gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5] gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16] Length = 848 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%) Query: 30 INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 I+ + +DSR + +F AI + +G +IP +G VV+S + Sbjct: 41 IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 100 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 T+ L+V NT K L A + G ++ +TG++GK+ V ++ Q+ Sbjct: 101 LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 155 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + P I S + ++++ P ++ S L G+ + S G + Sbjct: 156 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 205 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256 + IK G TN+G H Q+ +F+ + + E+L L K+ +IY D S V Sbjct: 206 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 259 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K A S+ + +++ +V + ++ D F P + + N+L Sbjct: 260 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 319 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 C+ + + + + E + +L V R E Sbjct: 320 NCLAACLYLMVPADQITERMARLEPVAMRLE 350 >gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Cyanobium sp. PCC 7001] Length = 484 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 92/406 (22%), Positives = 150/406 (36%), Gaps = 67/406 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVA-----------IVGNKEDGHLFI-PQAIA-------- 65 RE + D+ + GW + G+ + GHL++ P A++ Sbjct: 7 RELLFDSSLLDTPSVSGGWWLRPQQRQSYTGVSYLPGDIQPGHLYVQPSALSWGRGYDKD 66 Query: 66 ---------QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHP 114 +GA A+V+ + A + + + +T L+ A+R HP Sbjct: 67 RESLQRVKQRGARAVVLDA------IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHP 120 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 ++ VTGT GKS+ + + R G T S N Y L Sbjct: 121 --LVCVTGTVGKSTTKRGLAILLARCG---------RTHESQRNFNH-------YHGVTL 162 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA---GSFTNLGRDHIDYHQTQQAYFNAKM 231 + + T SV S L ++ L + A T + DH D + T +A + K Sbjct: 163 TLADTPKDTEFSVLEFSSDLPRYTLPKALIAAPDVAVITEIQYDHTDCYPTLEAIADQKS 222 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQG-KFIHLKKVCAIHNKQ 289 LF L P E A++ D Y + A + G RVL+ G + L+ + Sbjct: 223 LLFRGLKP-EGTAVLNRDSPYFARMHAAARSYGAARVLTFGCSPLADVALQDCSRQRSGW 281 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 QV + + PLPG V N+L +A+G D L L +P Sbjct: 282 QVRARCLDQSLTYTLPLPGRHDVRNSLAMLAGVVALGQDPNRCLAAFSALQPLPRHCALE 341 Query: 350 GTNSRGGRI-YVDYAHTSN--SLEMILKNIRTI---TSGRIIVVFG 389 +GG + +D + +SN SL L+ + + GR ++V G Sbjct: 342 HLAVQGGEVRLIDDSFSSNPASLRAALETLALQAEGSPGRRLLVLG 387 >gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti AK83] Length = 477 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA +V Sbjct: 9 DLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 69 VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSG 141 ++ + G Sbjct: 125 LRHVLSPLG 133 >gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium ljungdahlii DSM 13528] Length = 464 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/401 (18%), Positives = 161/401 (40%), Gaps = 48/401 (11%) Query: 8 YKDFPELINQLS---IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 Y F E++N +S I ++ + VS+D+R I+ IF+A+ G + +G+ + A Sbjct: 3 YMSFDEIVNAVSGQVIISGKYSGYR--NVSTDTRKIEEKDIFIALKGERFNGNKYAAVAS 60 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +GA +V Y + + I T ++ V + + L A K ++ +TG++ Sbjct: 61 DKGASICIVDEVYFKK---SEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSA 117 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + + + F++ T +N++ P I+ +S V Sbjct: 118 GKTTTKDLITSVLS----AKFKVFKTEG----NLNNQIGLPHMIFRLN-----NSYDVAV 164 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + + ++ G + TN+ R HI T++ AK+ + + K++ Sbjct: 165 LEMGMNNRGEIHSMAKAARPDIAVITNVLRAHIGNLGTRENILAAKLEI-TDFFSKDNTL 223 Query: 245 IIYAD---------DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 +I +D D ++ + N+ + + FI +C + + + Sbjct: 224 VINSDNDMLSNLKEDRFNIRRVGLEENSDISAYDIEVKEDFISF-NIC------ENNVKM 276 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E + F +PG++ V N+L+A + + + E L+ + R E +G Sbjct: 277 EER---FKVNVPGKYNVLNSLLAVACGRILNMTYGEIREGLKNIETTAMRMEIC----KG 329 Query: 356 GRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + V Y S++ + ++ S R + V G G+ Sbjct: 330 KKFNVINDSYNANPESMKAAIDVLKNFKSKRRVAVLGTMGE 370 >gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1] Length = 486 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 149/365 (40%), Gaps = 32/365 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR ++ G +FVA+ G DGH FI A A+GA A + DF P Sbjct: 46 VEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFAKGAVAAITDRPV---DF--------PH 94 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V +T K L A + +AVTG+ GK+ V + R+ + + Sbjct: 95 VLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASLDRASRGAAH----RS 150 Query: 153 ISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + S+ +N + P + A+A + G+ H A L H + LI T Sbjct: 151 VRSY--NNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAP---LSDHVRPHVALI----T 201 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + HI+ + +A + K ++F L+ + AII AD Y+ ++ A G V++ Sbjct: 202 TIAPAHIENLGSMEAIADEKAQIFTGLVTGGT-AIIPADSEYAGRMIGHAKALGVNVVTF 260 Query: 271 GY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328 G L + + VT + + PGE + N+L A G D Sbjct: 261 GRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAGGD 320 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSN--SLEMILKNIRTITSGRII 385 A L ++ + GR + GG+ + VD ++ +N S+ L+ + + R + Sbjct: 321 LASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAHRRV 380 Query: 386 VVFGC 390 V G Sbjct: 381 AVLGS 385 >gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405] gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405] Length = 882 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 23/366 (6%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G TST F D + A LSS+ V +E + G+ + L Sbjct: 508 KVGMTSTGGIFIGDECVLKGDNTGPTSAAMVLSSKEVEVAVLETARGGIVRKGLGYDLAD 567 Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-- 261 G TN+ DH ID T + AK + E + P +++ ADD + + M+RA Sbjct: 568 VGVITNIAEDHLGIDGMNTLEDLAFAKSLVVEAVKPG-GYSVLNADDKFVRYFMERAKGE 626 Query: 262 ------NAGCRVLSVGYQ--GKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 N V+ Q GK +++ K I+N + + + K+ + E + Sbjct: 627 IILFSKNNSNPVVKEHMQKGGKALYVDKDSIFIYNGKTAEVLMSVKEIPITYGGMIECNI 686 Query: 313 YNALVAAGLCIAIGIDSALVLEHLE----KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 N+L AA + + + + L + PGRF V ++ +DY H Sbjct: 687 ENSLAAASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMGDF--KVMLDYGHNPAG 744 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427 ++K + I + R++ V G GDRD G+I + I I D + R +P + Sbjct: 745 YLEVMKFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGE 804 Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487 + + + K +E I + L K L+ A G V N E+ V Sbjct: 805 VAGILYDAVISSGTKKENVEIIYSEDRALEK--ALLDAQPGDFVVMFYENFERAAEVVER 862 Query: 488 IIREIL 493 + RE+L Sbjct: 863 VRRELL 868 >gi|256751471|ref|ZP_05492349.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256749690|gb|EEU62716.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 819 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 30/298 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V I + G + +G T T + D + A + Sbjct: 480 IISITGTNGKTTVTRMTAHILKTYG---YTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID +T + A+ A Sbjct: 537 LADKNIDAAVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKV-CAIHNK 288 L E + ++ +++ ADD + + +RA G + Y H++K A++ K Sbjct: 594 LVVEAVKEDGYSVLNADDPMTPYLAQRAK--GKIIYFSMYDNNLTVKKHIEKGGIAVYVK 651 Query: 289 QQVTISVEG------KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 V + G K + L G+ + V NAL A + + ++ + ++ + Sbjct: 652 DGVIVIANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 PGRF N R+ VDY H ++ +++ + + + R+I V G GDR Sbjct: 712 CDTTHNPGRFNLF--NVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDR 767 >gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans OS217] gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans OS217] Length = 479 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 52/334 (15%) Query: 64 IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKF-----LSLFASRLYGKH 113 I+ GA+ I+ A S++ S I P ++ R+ + A + +H Sbjct: 62 ISLGAKVIIGHHADSVEHADVVVVSTAINHENPEIIAAKERRIPIVRRAEMLAELMRYRH 121 Query: 114 PENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 +A+ GT GK++ S + + Q +F IG ++S + RL T S +A+ Sbjct: 122 G---VAIAGTHGKTTTTSLIASVYAQAQRDPTFVIG--GLLNSAGTNARLGT-SRYLIAE 175 Query: 173 A----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 A S+L Q + V TN+ DH+D + Sbjct: 176 ADESDASFLHLQPMVSV-----------------------ITNIEADHMDTYGGDFEKLK 212 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAI-H 286 F LP A++ DD ++E+M R G ++++ G+ Q + I H Sbjct: 213 TTFVDFLHNLPFYGVAVMCIDDEINREIMPRV---GRQIVTYGFSQDADVQALNFNQIGH 269 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 Q V + +D + LPGE V NAL A + ID +++ L + + RF Sbjct: 270 QSQFVVRRKDKEDLALVLNLPGEHNVLNALAAIAVASEDDIDDESIVKALAEFEGIGRRF 329 Query: 347 EFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377 + +G N+ G++ + DY H + + +K R Sbjct: 330 QHLGEFNTANGQVMLVDDYGHHPSEVLATIKAAR 363 >gi|53712185|ref|YP_098177.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis YCH46] gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46] Length = 848 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%) Query: 30 INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 I+ + +DSR + +F AI + +G +IP +G VV+S + Sbjct: 41 IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 100 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 T+ L+V NT K L A + G ++ +TG++GK+ V ++ Q+ Sbjct: 101 LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 155 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + P I S + ++++ P ++ S L G+ + S G + Sbjct: 156 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 205 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256 + IK G TN+G H Q+ +F+ + + E+L L K+ +IY D S V Sbjct: 206 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 259 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K A S+ + +++ +V + ++ D F P + + N+L Sbjct: 260 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 319 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 C+ + + + + E + +L V R E Sbjct: 320 NCLAACLYLMVPADQITERMARLEPVAMRLE 350 >gi|170760804|ref|YP_001785449.1| cyanophycin synthetase [Clostridium botulinum A3 str. Loch Maree] gi|169407793|gb|ACA56204.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A3 str. Loch Maree] Length = 873 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 147/360 (40%), Gaps = 53/360 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 +S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 ISGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVDVAVLELARGGLIRSGLPY 560 Query: 202 IKLIAGSFTNLGRDH-----IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256 G TN+ DH ID + AY A L E + K+ +I ADD S + Sbjct: 561 DLADVGIITNVTEDHLGLGGIDTLE-DMAYVKA---LVGEAVKKDGYVVINADDEASINI 616 Query: 257 MKRAHNA-----------------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + R + + L + G I+LKK+ NK + I+V Sbjct: 617 INRMKSKIILFTKNKNNPIIPQYLDNKNLVLYLDGDTIYLKKI----NKNEEIINVN--- 669 Query: 300 FDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSR 354 L G+ + V NA+ A IA+G+D + + LE PGRF N Sbjct: 670 -KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVH 726 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 G + +DY H +++L++I+ I RII V G GDR +G I + D Sbjct: 727 GTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYIY 786 Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 + +D + + A+++ G +E G + EA++ AIE N D++++ Sbjct: 787 IKEDKDKRGRMDGEIADLLK--KGVLETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844 >gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium spiritivorum ATCC 33861] Length = 813 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%) Query: 36 DSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPI 92 DSR I + IF A G ++DGHL+I A +G ++ +D ++ + I Sbjct: 31 DSRKIAHEKLGIFFAFTG-RQDGHLYIQDAYNKGVRNFILE-----KDTEQEVQMPDANI 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V N+ L A + ++ +TG++GK+ V ++ Q+ + P Sbjct: 85 LWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKTIVKEWLFQL----------MSPEYK 134 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211 I + + S + +A +L LS+Q + SH + RL+ IK G TN Sbjct: 135 IYRSPK----SYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTFGVLTN 190 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H ++ K+RLF K++ +IY A E ++ + R LS G Sbjct: 191 IGIAHQQGFASKLEKTEEKLRLF-----KDAETLIYP--AKYLEAVQIPYKP--RKLSWG 241 Query: 272 YQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + +V +I + VT+ GK F P + NA+ + + G Sbjct: 242 EEED--NQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLRFGY 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 D+AL+ E + L V R E + I Y++ SL++ L Sbjct: 300 DTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIAL 345 >gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Neisseria subflava NJ9703] Length = 455 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%) Query: 14 LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 I Q P+ + ++ + +DSR IQ G +F A+ G + D H F+ +A GA A+VV Sbjct: 8 FICQTLGLPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVV 67 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 S +D +A + L VD+T L A + +TG+SGK++V Sbjct: 68 SR----EDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKTTV 115 >gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel] Length = 502 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 8/117 (6%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 NEV +S+ ++ G +F+A+ GN DGH ++ AI +GA AI+VS + D Sbjct: 23 NEVQFNSKDVKKGDLFIALKGNG-DGHDYVLDAIDKGANAIIVSKHIDIVD-------KN 74 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 I++VD+ + L A G +A+TG+ GK+S ++ + + S + Sbjct: 75 KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTKGALKTLLTETSDKSLHL 131 >gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. WH 7803] gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. WH 7803] Length = 471 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 58/362 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + + V +DSR ++ G F+ + G + DGH F+ A+ +GA+A V+S D + + Sbjct: 27 KALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVAS-----DCAHAVP 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 V +T + A+ + ++AVTG++GK++ + RS L+ Sbjct: 82 DGLLHWKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELI-----RSALA---- 132 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206 P + + +N P+ L A + V VE G + ++ + A Sbjct: 133 -PLGDVQASDSNNNNDIGVPLTLLGA-----HRSHAAVVVEMGMRGAGE--IERLSCCAE 184 Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 TN+G HI ++ A +AK + L P+ +I A DA ++ + R Sbjct: 185 PEIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPR-GVVVIPAGDALLEDALSRCWTG 243 Query: 264 GCRVLSVGYQG--------------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 R+L V +G + + + + +++ +G F PL G Sbjct: 244 --RILRVSLEGDEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQG--LRFRCPLEGR 299 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSR---GGRIYVDYAHT 365 N ++A +A+ + + L LE + V +PG G N R GG +D + Sbjct: 300 HNARNFMLA----LAVASELEVPLHSLEAMDVAMPG-----GRNKRLSMGGVSLLDETYN 350 Query: 366 SN 367 ++ Sbjct: 351 AS 352 >gi|60680368|ref|YP_210512.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis NCTC 9343] gi|60491802|emb|CAH06560.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis NCTC 9343] gi|301161901|emb|CBW21445.1| putative alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl, 6-diaminopimelate-D-alanyl-D-alanyl ligase fusion protein [Bacteroides fragilis 638R] Length = 840 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%) Query: 30 INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 I+ + +DSR + +F AI + +G +IP +G VV+S + Sbjct: 33 IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 92 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 T+ L+V NT K L A + G ++ +TG++GK+ V ++ Q+ Sbjct: 93 LKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVGITGSNGKTIVKEWLHQL----- 147 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + P I S + ++++ P ++ S L G+ + S G + Sbjct: 148 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 197 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256 + IK G TN+G H Q+ +F+ + + E+L L K+ +IY D S V Sbjct: 198 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 251 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K A S+ + +++ +V + ++ D F P + + N+L Sbjct: 252 GKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDASIENSL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 C+ + + + + E + +L V R E Sbjct: 312 NCLAACLYLMVPADQITERMARLEPVAMRLE 342 >gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prosthecochloris vibrioformis DSM 265] gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlorobium phaeovibrioides DSM 265] Length = 473 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 33/227 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR ++ G IFVA+ G + DGH F+ +GA ++VS + S Sbjct: 33 VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 LVV +T L A+ ++ V G++GK++ + + ++ ++ Sbjct: 93 LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLS----TAMRV----H 144 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTH-------VSVEASSHGLDQHRLDGIK 203 +S +N L P + + + ++ G+ H S+ SHGL Sbjct: 145 MSHANLNNHLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGL--------- 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 TN+G +H+++ A+ LF L E+ I+ ++ Sbjct: 196 -----LTNIGHEHLEFLVNLDGVARAERALFSFL--DETGGTIFVNN 235 >gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium accolens ATCC 49726] Length = 509 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 44/258 (17%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV-------------- 72 ER V DSR + G +FVA+ G + DGH F +AI QGA A++ Sbjct: 25 ERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVAVLAARPVGVPAIIVKP 84 Query: 73 ---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 V+ + D A + V+ SRL + +I+ VTG++GK+S Sbjct: 85 QGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQGLDIVGVTGSAGKTST 144 Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-----LSYLSSQGVTH 184 + I + G + + P + +N + P ++ +S++G+ H Sbjct: 145 KDLLATIFRAEGET---VAPPGSF-----NNEVGLPYTALRCDEHTRFLVAEMSARGIGH 196 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243 + +H + G N+G H+ +++ AK L E LP + Sbjct: 197 I----------RHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELI-EALPAAADG 245 Query: 244 --AIIYADDAYSKEVMKR 259 A++ ADD + + R Sbjct: 246 GVAVLNADDPFVSSMAPR 263 >gi|326771694|ref|ZP_08230979.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505] gi|326637827|gb|EGE38728.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505] Length = 524 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 41/300 (13%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D + T +A+ A + L+P + A DA + + + A G RV++ Sbjct: 200 TNVEPDHLDSYGTAEAFETAFVDFAHRLVPG-GLLVACAADAGALRLAQSAAAEGLRVVT 258 Query: 270 VGYQGK------------FIHL--KKVCAIHNKQQVTISVE-GKD-------------FD 301 + G +HL ++ A + +T++ G++ + Sbjct: 259 YSFAGPDTLPGGVLVGEGHVHLDIQERGASSTRGLLTLTTAAGREPAGGAGEEPHHGPVE 318 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 + +PG+ +A A I +G++ AL+ L RFE G + G R+ D Sbjct: 319 LVLAVPGDHVALDAAGAWAAGIELGVEPALMARALGAFGGTGRRFEDRG-EADGVRVIDD 377 Query: 362 YAHTSNSLEMILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTD 417 YAH +E +L+ R + GR++V+F R + G+ AL LAD +VTD Sbjct: 378 YAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSRTRAFADRFGQ-ALALADAVVVTD 436 Query: 418 DNPRSED----PEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 P E P+ + +PG + R++A ++ D+L+ G G T Sbjct: 437 VYPARETQADFPDITGDTVAQRVPGGTARFVAERLDAAHAVADLARPGDLLLTVGAGDVT 496 >gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Propionibacterium acnes J139] Length = 485 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 27/159 (16%) Query: 37 SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96 +R + G +F+A+ G + DGH F A GA A++V+ Q P LVVD Sbjct: 32 TRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LPHLVVD 82 Query: 97 NTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152 + + LS A + E +AVTG+SGK+S + QI L +F GPT + Sbjct: 83 DGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQI-----LETF--GPTVAP 135 Query: 153 ISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVS 186 + SF +N + P S + +S + ++G+ H+S Sbjct: 136 VGSF--NNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172 >gi|183220592|ref|YP_001838588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910700|ref|YP_001962255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775376|gb|ABZ93677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779014|gb|ABZ97312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 47/247 (19%) Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTP 165 +R++ K P I+ +TGT GKS+ + + Q+ ++ G +SF +N Sbjct: 105 ARIFYKGP--IIGITGTDGKSTTTALTYHLLQKKYPNAKMGGNIGVPFTSFCLEN----- 157 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 + +V +E SS+ LD +KL A + NL DH++ H+T ++ Sbjct: 158 ----------------LDYVVLELSSYQLDDS--PNLKLTASAILNLASDHLERHKTMES 199 Query: 226 YFNAKMRLFEELLPKESPA----IIYADDAYSKEVMKRAHNAG-CRVLSVGYQGKFIHLK 280 Y AK ++ + L K+ I ++ + K + H+ G V IH Sbjct: 200 YALAKWKI-QNLEDKDHQCFVNPIFFSYTPFRKPNVSNLHSIGDNETYFVSLHPNLIHTP 258 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 K H FPL G+ + N A L G+D + + LE Sbjct: 259 K----HTYDATR-----------FPLTGKHNLMNLCFAIALAEVAGLDPEQIQKQLETFQ 303 Query: 341 VVPGRFE 347 +P RF+ Sbjct: 304 GLPHRFQ 310 >gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. GAI101] Length = 478 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 21/288 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS D+R +QAG +FVA+ + DG F+ A+ +GA A +VS + + Sbjct: 24 DGVSIDTRTLQAGDLFVAL-KDVRDGQDFVATALEKGAGAALVSR------VPDGVADDA 76 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 P+L+VD+ K L + + ++AVTG+ GK+S + I G + Sbjct: 77 PLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTSTKEMLLAIFADQGRAH------ 130 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +++ S+ +N P+ LA+ + + V + + L K A T Sbjct: 131 ASVDSY--NNHWGV--PLTLAR-MPVDTDYAVIEIGMNHPGEISPLAIL--TKPDAAMVT 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + H++ K +F+ L P A+I AD ++ +M +A + R + Sbjct: 184 TVAAVHLEAFDDVAGIALEKAAIFDGLEPG-GVAVINADIDHAAILMAKAVDRRLRDIEF 242 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 G LK V + V +G F PG NAL A Sbjct: 243 GENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGA 290 >gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus equi subsp. zooepidemicus] Length = 461 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 146/372 (39%), Gaps = 54/372 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR+I G +F+ + G + DGH FI A GA A FS S Sbjct: 26 LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GL 142 P ++V+N A K +++AVTG++GK+S ++ + ++ G Sbjct: 75 RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + IG T+ +D I L ++ + +S A H Sbjct: 135 YNNDIGLPYTVLHMPEDTE-----KIVLEMGQDHMGD--IQLLSRIARPH---------- 177 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 T +G H+ Y +++ KM++ + + +S I+ A ++ Sbjct: 178 ---IAVLTLIGEAHLAYFGSREKIAEGKMQIVDGM---DSNGILIAP---GDPILDPYLP 228 Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 V+ G +Q + K C K +T PL G++ NA++AA + Sbjct: 229 DSQMVIRFGDHQELVVEDIKEC----KDSLTFRTNVLPRPVTIPLTGKYNATNAMIAAYV 284 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 + + ++E LE + + R E++ + G + D Y ++ +IL+ I Sbjct: 285 GKLLAVPDEDIIEALEAVKLTRHRTEWLKA-ANGADLLADVYNANPTAMRLILETFAAIP 343 Query: 381 S---GRIIVVFG 389 + G+ I V Sbjct: 344 ANPNGKKIAVLA 355 >gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276] gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis 6276s] Length = 450 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +L V + R+ L A R YG+ ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152 >gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis B/Jali20/OT] Length = 450 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +L V + R+ L A R YG+ ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152 >gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila L48] gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48] Length = 482 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 100/429 (23%), Positives = 168/429 (39%), Gaps = 68/429 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A+ +VVSSA + + I VV L R + +AV GT Sbjct: 73 AASADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125 Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179 GK++ S + + GL +F IG +++ + +L T S +A+A S+L Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235 Q + V + D + G F L + +++ Y A M L Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234 Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ + P + Y +S+E RA N V G Q F L++ C + + +S Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRRDC-----EPLEVS 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353 V +PG V NAL + GI +++ L V RF+ G Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPV 333 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 GG + + DY H + ++K +R S R+++V+ R R + L Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391 Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459 D + ++ + P E+ P ++ H I P +IE+G + + +L Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449 Query: 460 DVLVVAGKG 468 D+L+ G G Sbjct: 450 DILICQGAG 458 >gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydia trachomatis A/HAR-13] Length = 450 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 24/149 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +L V + R+ L A R YG+ ++ +TG+ GK++ +F Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNFANQLL--SSV 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152 >gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium xylanolyticum LX-11] Length = 465 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 40/297 (13%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ DH+DY + N K F L+P + + DD + V+K N ++ Sbjct: 184 NVDSDHLDYFKNID---NIKQSFTQFANLVPNDGFVVACGDDPNTMSVLK---NVNRNII 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFD----------FLFPLPGEFQVYNALV 317 + G L C N + + +G FD F + G+ + NAL Sbjct: 238 TFG-------LDSNCT-WNAKNIKFDEKGFPSFDVYHNGTFVERFELSIVGKHNILNALA 289 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 +C +G+D + ++K RFEF GT G I DYAH ++ L + Sbjct: 290 TLSVCHLLGVDIKKTPDIIKKFKGTHRRFEFKGT-IDGAVIIDDYAHHPTEIKATLSSAL 348 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGI 436 RII VF + D ADI I+TD R +D +RAE + + Sbjct: 349 NYPHNRIICVFQPHTYTRTYSLLNDFAASFDDADITIITDIYAAREKDTGIVRAEDLANL 408 Query: 437 PGFIEKGNRIEAIRTAIEMLN-------KQDVLVVAGKG--HETVHIVTNGEKKMSV 484 ++GN + I+ ++++ D+++ G G +E +++ N KK ++ Sbjct: 409 --IKDRGNEVYYIKEFSDIVDYLKGTIKNGDLVITIGAGDVYEIGNMLLNFNKKAAI 463 >gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus sp. 2_A_57_CT2] Length = 457 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 141/345 (40%), Gaps = 39/345 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS DSR I G +FV G DGH F+ AI +GA A A+ +D + Sbjct: 27 IQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDAIEKGAAA-----AFWQKDVPNP-PLH 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 PIL+V++T L A + + +TG++GK++ + L S Q Sbjct: 81 LPILIVEDTLTALQELARSYRDELKIKVAGITGSNGKTTTKDMT------ANLLSLQYKV 134 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGS 208 T ++ +N + P L+ L+ + T ++V E G + +D + +A Sbjct: 135 QKTEGNY--NNHIGLP--------LTILALEEDTEIAVLEMGMSG--RGEIDFLTKLARP 182 Query: 209 ----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H+ +++ AK+ + L +E+ +IY D + +++N Sbjct: 183 DAVIITNIGESHLQDLGSREGIAEAKLEIVNGL--QENGLVIYYGDEPLLDEKLKSYNGS 240 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGL 321 + + G GK V + KQ + S G + F P+ G V NAL A Sbjct: 241 AALRTFGRTGK----NDVYPMDIKQNDSGSTFGINVSSGKFYLPVLGTHNVLNALAAMIA 296 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 G+ + E L + R E + S G +I D + S Sbjct: 297 AAHFGVPYEKMNEGFASLKLTNMRMELLEGQS-GEKIINDAYNAS 340 >gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 448 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 47/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S +S++I+ +F+ + G++ DGH FI +A+ GA + + S +DF Sbjct: 25 VKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISFI-----SQKDFDDL---K 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V++T L+L + Y + N ++ VTG+ GK+S ++ + S + Sbjct: 77 VPYVKVEDT--LLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIFNVL------SLR 128 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205 +F +N + P I L+ V + S+ G + +L I K Sbjct: 129 YKAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFG-EISKLSQIAKPD 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262 G TN+G HI+ +++ F AK + ++ +P+ II D+ K+ +KR Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V+++G + + + H Q S E + + +YN+L A + Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIAVG 290 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +G+D L+ E + + + RFE + +G VD + +++ M L I +I Sbjct: 291 TILGVDRELIKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346 Query: 382 -GRIIVVFG 389 G+ I+V G Sbjct: 347 DGKKILVLG 355 >gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989] Length = 452 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 16/140 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KI+ V DSR + ++V I+G + DGH F Q I GA SL Sbjct: 25 KKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQTIEDGA-------LISLWQKDHVPY 77 Query: 88 SNTPILVVDNT-RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS------ 140 + P+++VD+T R L + L HP ++ VTG++GK+S + I + Sbjct: 78 PDFPVILVDDTLRAMQDLSKAYLDELHPL-VIGVTGSNGKTSCKDMLYSIFSQEKKTQKT 136 Query: 141 -GLSSFQIGPTSTISSFAQD 159 G + +IG TI F +D Sbjct: 137 QGNRNSEIGLPLTIFDFDED 156 >gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1] gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1] Length = 468 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 104/442 (23%), Positives = 158/442 (35%), Gaps = 68/442 (15%) Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114 DGH P IA GA+A+V +SA +R + L R L + L+ + Sbjct: 50 DGH--DPAWIA-GADALVATSA---------VRDDHVELSAARARGIPVLRRADLWREWS 97 Query: 115 EN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + ++AV GT GK++ + + + Q G F IG R P+ + Sbjct: 98 QQRRVVAVAGTHGKTTTTALIALMLTQAGGNPGFLIG--GETPDLGIHARWGDPAAPLVV 155 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y D+ L +A TN+ DH+D + + Y A Sbjct: 156 EADEY------------------DRTFLALTPDVA-VMTNVEWDHVDIYPSPDNY-EAAF 195 Query: 232 RLFEELLPKESPAIIYADDA-------------YSKEVMKRAHNAGCRVLSVGYQGKFIH 278 RLF + + I+ DD Y E + A CR+ + + + Sbjct: 196 RLFTRRVAQPQRLIVCGDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAANVR 255 Query: 279 LKKVCAIHNKQQVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + + G D + L G+ V NAL A + +G++ + + L Sbjct: 256 YDGAMTNFDLWRYDRRTFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIADAL 315 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF--GCGGDR 394 RF+ G + G I DYAH L R R +VV+ R Sbjct: 316 AAYRGARRRFDIKG-EANGITIIDDYAHHPTEARATLAAARARFPQRRLVVYLQPHTFSR 374 Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIEK------GNRI 446 Q R A D AD+ + D P E DP + H + G I GN + Sbjct: 375 TQALRDAWAD-AFDHADVVRIGDVYPARETGDPRT----VAHALAGCIRHNDVQAVGNVV 429 Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468 EA T +L DVL+ G G Sbjct: 430 EAAATIGGLLRPGDVLLTLGAG 451 >gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium phytofermentans ISDg] gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium phytofermentans ISDg] Length = 454 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 121/282 (42%), Gaps = 35/282 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I A+TGT+GK+S + V +I + S F +G + Q + T + +A Sbjct: 111 IAAITGTNGKTSTTTLVGEIMKTYYKSVFVVGNIGV--PYTQMVKNTENDSVTVA----- 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 E SS L+ ++ + + N+ DH++ H T +AY AK+ + + Sbjct: 164 -----------EMSSFQLET--IETFRPDVSAILNITPDHLNRHHTMEAYIEAKVNITKN 210 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTIS 294 KE I+ +D+Y + V R SV +G F+ + ++++ + Sbjct: 211 -QTKEDTCILNYEDSYLRTVSGRIPATILWFSSVRELERGLFLRENHIIYRDDEKECVVC 269 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L + G+ N + A G+ IA+ + + E + K V R E+V T R Sbjct: 270 ----DVNEL-QIIGKHNYENVMAAVGIAIALKVPMDFIREAVTKFRGVEHRIEYV-TTKR 323 Query: 355 GGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRD 395 G + Y D T+ + +K ++T T ++ G G D+D Sbjct: 324 GVKYYNDSKGTNPDASIQAIKAMQTKT-----LLIGGGYDKD 360 >gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp. HGF2] gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp. HGF2] Length = 437 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 41/272 (15%) Query: 119 AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG-PTSTISSFAQDNRLTTPSPIYLAKALS 175 AVTGT+GK+++ + + ++ + + + IG P S ++ +D +A LS Sbjct: 107 AVTGTNGKTTITTMLYEMLKYNHKAIVAGNIGWPLSELALAYEDEEKD------VALELS 160 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G+ H + S NL DH+DY + ++Y+ +KMR++E Sbjct: 161 NFQLLGIEHFAPHVSV-----------------VCNLAPDHLDYMPSVESYYESKMRIYE 203 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ + DDA VM+ A + C+V+ + + L + ++ + Sbjct: 204 N-CTEDDWFLRNVDDA---TVMQYAQHIPCKVIDFSLTRQDVDLYRKDGTVYLHELAL-F 258 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E K+F + G++ + NA++A+ + +G+ + + + + V R E++G + G Sbjct: 259 EEKNFHVV----GDYNLSNAMIASCMAYKLGVSVSDIQKAIAAFSPVEHRLEYIGEKN-G 313 Query: 356 GRIYVDYAHTSN-----SLEMILKNIRTITSG 382 + Y D T+ +L KNI + G Sbjct: 314 VKFYNDSKATNTHAVAAALNSFDKNIILLAGG 345 >gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor lactoaceticus 6A] Length = 448 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 47/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S +S++I+ +F+ + G++ DGH FI +A+ GA + + S +DF Sbjct: 25 VKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAISFI-----SQKDFDDL---K 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V++T L+L + Y + N ++ VTG+ GK+S ++ + S + Sbjct: 77 VPYVKVEDT--LLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEYIFNVL------SLR 128 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLI 205 +F +N + P I L+ V + S+ G + +L I K Sbjct: 129 YKAFKNQGNF--NNHIGLPISI-----LNMPEDTQVAVFEMGMSNFG-EISKLSQIAKPD 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262 G TN+G HI+ +++ F AK + ++ +P+ II D+ K+ +KR Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V+++G + + + H Q S E + + +YN+L A + Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIAVG 290 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +G+D L+ E + + + RFE + +G VD + +++ M L I +I Sbjct: 291 TILGVDRELIKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346 Query: 382 -GRIIVVFG 389 G+ I+V G Sbjct: 347 DGKKILVLG 355 >gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 459 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+DSR +F A+ G D H ++ +A QG A VV N Sbjct: 25 VENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHP---------TEGN 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 L+V ++R L A L K ++A+TG+SGK++V V I Q+S + S Sbjct: 76 IARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDS 130 >gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806] Length = 877 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 26/321 (8%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ILA+TGT+GK++ + + IC+++G +G T+T + D + A Sbjct: 490 ILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASMI 546 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235 L V +E + G+ + L + G N+ DH+ AK++ + Sbjct: 547 LKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVA 606 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKK--VCAIHNKQQV 291 E++ E A++ ADD + + ++ S+ I H+++ + AI+ + Sbjct: 607 EVVSAEGYAVLNADDPLTASMAEKVKGR-VAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665 Query: 292 TISVEGK---DFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341 +I +EG+ + +P F + NAL A GID L+ + + Sbjct: 666 SI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPS 724 Query: 342 ---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 PGR +DYAH E + + SG + V G GDR Sbjct: 725 VAQTPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRDDD 781 Query: 399 RPIMGKIALDLADIAIVTDDN 419 ++GK++ + D IV +DN Sbjct: 782 LILLGKLSAQMFDRIIVKEDN 802 >gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria sp. TM1040] Length = 463 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 ++N +S D+R I+ G +FVA+ + DGH F+ QA+ +GA A +VS + Sbjct: 22 QVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSH------IPEGVAE 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P+L+V++ + L + ++AVTG+ GK+S + + G Sbjct: 75 DAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQG 127 >gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA] gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA] Length = 457 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/341 (21%), Positives = 132/341 (38%), Gaps = 50/341 (14%) Query: 65 AQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHP 114 ++GAE + +L+D ++A I S+ P +++ K + L F + H Sbjct: 53 SEGAEIYIGHDKGNLKDVDLVVYTAAIPSDNP-EIIEAKDKNIDLMDRAEFLGLIMKGHK 111 Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLA 171 N+ A++GT GK++ S + + ++ L PT + N S ++ Sbjct: 112 YNV-AISGTHGKTTCTSMLSHVTLKADLD-----PTILVGGELDVIDGNFKIGNSEYFIT 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y S + + G N+ DH+DY++ + Sbjct: 166 EACEYKESFLKFYPYI-------------------GVILNIDADHLDYYRDLN-HIKETF 205 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 F ++P + I Y +D E++ +A C +S G + + + NK + Sbjct: 206 EKFSNIIPSDGYLIGYCEDENVNEILNKAK---CNTISYGINKGDVRATNI-SFDNKGRA 261 Query: 292 TISVEGKDFDFLFPLP----GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + +V KD D LF + G+ + NAL + + I ++E L + RFE Sbjct: 262 SFTV-CKDNDELFDVTLNTTGKHNILNALSTICVGLIFNIPYTSIIEGLRECKGAHKRFE 320 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + G G I DYAH ++ L I I VF Sbjct: 321 YKG-EFNGATIIDDYAHHPVEIKATLDTATIIPHKNIYAVF 360 >gi|150389045|ref|YP_001319094.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF] gi|149948907|gb|ABR47435.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF] Length = 887 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 43/379 (11%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I +VTGT+GK++ + +I +++GL +G TST + QD + A S Sbjct: 482 IFSVTGTNGKTTTTRMLAKILRQNGLV---VGMTSTGGIYVQDELICGGDATGPRSAESI 538 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLF 234 L V +E + GL L G TN+G DH+ D T + + K + Sbjct: 539 LLDNRVEVAVLETARGGLINKGLAYDLADIGIITNIGNDHLGMDGVNTLEEMADVKALVT 598 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--------AIH 286 E + P + AI+ A+D + + + +R C++L Y K ++ K + A++ Sbjct: 599 EAIRP-QGYAILNAEDKFVERIAQRIT---CQIL---YFAKDMNNKVIKDHVNRGEKAVY 651 Query: 287 NKQQVTISVEG---KDFDFLFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLE 337 K + +G K + +P + + N+L A GI + ++ + L Sbjct: 652 IKDDIIQVFDGEKEKPVIHVENIPATYGGVLIHNIENSLAAVAAAFGHGIKTDVIAKGLS 711 Query: 338 KLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393 + PGRF R+ +DY H + + +L+ ++ + R+I V G GD Sbjct: 712 QFQTDASTNPGRFNIFEMEK--CRVVIDYGHNIDGYQKVLEGLKLMKKNRLIGVIGVPGD 769 Query: 394 RDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIE--- 447 R +G+I+ D + I D + R +P ++ + G + G E+ +IE Sbjct: 770 RTDISTLKIGEISGKHFDHVYIKEDKDLRGRNPGEVANLMKKGCALGGLKEEEIQIEHCE 829 Query: 448 --AIRTAIEMLNKQDVLVV 464 A++ A+E + D+++V Sbjct: 830 IKALQKALESAQQGDIIIV 848 >gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC 2916] gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC 2916] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G+ N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYRDLNDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++K A+ C V++ G I +K C + + K F Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+ + N+L + + +A + ++E +E RFE G + I DYAH Sbjct: 279 VPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 + L + ++ VF Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360 >gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfuromonas acetoxidans DSM 684] Length = 456 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 105/400 (26%), Positives = 163/400 (40%), Gaps = 41/400 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN +S+DSR +Q+G +FV + G DGH ++ QA+ GA A + Sbjct: 24 EINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAVEHGAAACLSEEVVG--------GL 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P++ V++T + L A + +LAVTGT+GK+S + I + Sbjct: 76 PVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKTSTKEMLASILAQG-------- 127 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV-SVEASSHGLDQHRLDGIKLIAG 207 + + + N L I L L+ LS + V + S HG + + + Sbjct: 128 -SDGLKTEGNFNNL-----IGLPLTLARLSDEHRWMVLELGMSQHGEIERLTEIAQPDVA 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H+ + AK LF L + A++ DDA + G RV Sbjct: 182 LITNVGAGHLAGVGNIEGVARAKGELFSG-LKAGATAVVNRDDAL---IAALPIPDGVRV 237 Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQV--TISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 + S+ YQ + + +I + QQ T+ V PLPG QVYNAL AA Sbjct: 238 IDFSLTYQTQV----RATSIDSGQQASFTLHVGESQVRVELPLPGRHQVYNALAAAAAAH 293 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TS 381 A+G + L + + GR E V T G + D Y S++ L + Sbjct: 294 AVGCSLEQIATGLGCVKMAAGRLE-VRTLPHGATVLDDSYNANPQSMQAALSVLSDWPCQ 352 Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418 G I V G GD Q +G++A A+ + D Sbjct: 353 GTKIAVLGDMLELGDVSQACHEELGRLAAQRAEQVLCYGD 392 >gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp. BAL3] gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp. BAL3] Length = 467 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 104/264 (39%), Gaps = 32/264 (12%) Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 + VV + F + G+ P ++A+TGT+GKS+ + + + Q++GL+ +G Sbjct: 94 VPVVGDIELFARALDALPEGRRPW-VIAITGTNGKSTTTALIGWVLQQAGLT-VHVGGNI 151 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 I A L P+P G +V +E SS+ LD G A TN Sbjct: 152 GIGVLA----LPEPTP-------------GAVYV-IEVSSYQLDL--TTGFAPDAAILTN 191 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + DH+D H + Y AK R+F+ +++ + DD Y + + G V V Sbjct: 192 ISPDHLDRHGGMEGYVAAKRRIFQS---RKTAPYVGIDDPYGFAIWQELKAEGRAVDPVS 248 Query: 272 YQGKF-----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + ++L +N + D LPG NA A +G Sbjct: 249 VERPMDDDLGMYLMDDWLTYNAGGRPAPI--VDLSKARSLPGRHNAQNAAFAFLAVNDMG 306 Query: 327 IDSALVLEHLEKLHVVPGRFEFVG 350 I V++ L + R E VG Sbjct: 307 IPEETVVKGLLTFPGLAHRMEAVG 330 >gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Renibacterium salmoninarum ATCC 33209] Length = 515 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 33/300 (11%) Query: 27 ERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS---LQD 81 E +IN ++ +DSR +Q G ++VA G DGH FI AI GA I+ + Q Sbjct: 24 ELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFIEAAIEAGAILIIAEREIADAQGQP 83 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 F A I ++ + D + + L R G+ +L +TG++GK++ + I + Sbjct: 84 FPAIIVADAVQAMGDIAAEVVQLI--RANGE--VTVLGITGSAGKTTTKDLLAGILR--- 136 Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHR 198 Q+GPT + I S+ + + P ++ A + + G T + GL Sbjct: 137 ----QLGPTVAPIGSY--NGEVGVPLTVFQADLTTRFLVIEMGATRIGHIEYLAGL---- 186 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +K G +G H + AK L E L P + + D V Sbjct: 187 ---VKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALSPTGTAVLNLGD----GRVSA 239 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A VL G +G I + + QV S FD FP + + + L+ Sbjct: 240 MASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVG-SNATPSFDLRFPDGSSWPIRSGLIG 298 >gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 423 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 39/363 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R +F + G + +G+ F+P AI +GA +V + + +S ++ Sbjct: 14 VATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTND----KKWSYLPQA---- 65 Query: 93 LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ++V++T K L A LY +H I+A+TG++GK++ + + +S Sbjct: 66 ILVEDTLKTLQELA--LYHRHYLATPIIALTGSNGKTTTKELIYSVLNQS------FRTL 117 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 T +F +N L P + L + V + A+ G + G T Sbjct: 118 KTEGNF--NNHLGVPLTL-----LRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYIT 170 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N GR H++ + + AK L+ L K++ I + D E+ R N S Sbjct: 171 NFGRAHLEGFGSFEGVIQAKSELY-NYLKKDNKRIFFCQD---NEIQVRLLNGYSNTYSF 226 Query: 271 GYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGI 327 +G K +L+ K+ + + + ++ + L G++ N VAA +CI + Sbjct: 227 SMEGNKKANLQLSLY---KESLLVKLHWEESNIQTHLIGKYNAMN--VAAAICIGNYFKL 281 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386 ++ +E R +FV + G +I +D Y +S+ ++ + I S I+ Sbjct: 282 TKEAIIHGIEGYIPTNNRSQFV-EKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANKIL 340 Query: 387 VFG 389 + G Sbjct: 341 ILG 343 >gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces griseoflavus Tu4000] gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces griseoflavus Tu4000] Length = 470 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 40/218 (18%) Query: 62 QAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 + + G E IV + + F+A R+ P+ A RL G LA Sbjct: 63 ETLPDGTELIVTAPGWRPDKPLFAAADRAGVPVW-------GDVELAWRLRGPDAAPWLA 115 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTGT+GK++ + I + +GL + +G + L A+ L Sbjct: 116 VTGTNGKTTTVQMLASILEAAGLRTAAVGNIG----------------VSLLDAV--LGE 157 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + ++VE SS+ L H ++ + + NL DH+D+H + +AY K R++E Sbjct: 158 ERYDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYARDKGRVYE---- 211 Query: 240 KESPAIIYADDAYSK----EVMKRAH-NAGCRVLSVGY 272 A +Y DA K ++++ A GCR +VG+ Sbjct: 212 GNRVACVYNADATGKPSTEDLVREADVEEGCR--AVGF 247 >gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str. Kyoto] gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str. Kyoto] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G+ N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYRDLNDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++K A+ C V++ G I +K C + + K F Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+ + N+L + + +A + ++E +E RFE G + I DYAH Sbjct: 279 VPGKHNILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 + L + ++ VF Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360 >gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 518 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 146/372 (39%), Gaps = 47/372 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R + G +FVA+ G + D H F+ QA A GA VV + +L I + P+ Sbjct: 81 ISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALP----AIPGDFPL 136 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T L A + + AV G++GK++ V I G Sbjct: 137 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRG----------- 185 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211 + + L + L L L V V + + RL I+ AG T Sbjct: 186 -PALKTEGNLNNEVGVPL--TLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITV 242 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAH 261 + +H++ + + A+ LF EL P E+ A++ DD + RA Sbjct: 243 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPLIPAQAAKGRGKRLTFGRAE 301 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A R+ V +G+ +T+ +G+D+ GE NA A L Sbjct: 302 SADVRLSQVETRGR-----------EGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFAL 350 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +A+G + LE R V + G VD + +N S++ L +RT+ Sbjct: 351 ALALGYSPEECVRGLESARPYARRLNVV--DGLHGVTVVDDCYNANPASMDAALDTLRTL 408 Query: 380 TS--GRIIVVFG 389 + GR + V G Sbjct: 409 VTAGGRAVAVLG 420 >gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Riemerella anatipestifer DSM 15868] gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Riemerella anatipestifer RA-YM] gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer RA-GD] Length = 424 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/330 (23%), Positives = 130/330 (39%), Gaps = 46/330 (13%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K N+VS DSR I G +F A G + AI +GA A++V Q I Sbjct: 12 KSNKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVE-----QKEYENISK 66 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 N I V +T KFL + K I+A+TG++GK++ + + + F G Sbjct: 67 N--IFYVPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKG 124 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLI 205 +N + P L+ LS + ++V ++H + RL I + Sbjct: 125 NL--------NNHIGVP--------LTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPD 168 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN G+ H++ + K L++ L + ++ A+D E K C Sbjct: 169 YGYVTNFGKAHLEGFGGVEGVIKGKSELYDYLKKENKQILVNANDTIQVEKTKDYSKIIC 228 Query: 266 -RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 L Y + ++ Q+V + EG+ + + L G + N A L + Sbjct: 229 FGTLQSDYDFQL--------FYDNQRVGLIFEGE--EMISQLTGAYNFTNISAAVTLGLH 278 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 GID L+ E ++ E+ TN R Sbjct: 279 FGIDKNLIKEAIQ---------EYTPTNMR 299 >gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase [Streptomyces scabiei 87.22] Length = 471 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 35/248 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR + G +FVA G + DGH F + GA A++ S + P Sbjct: 31 VVRDSREVVPGSLFVAFAGERVDGHDFAAAVVEAGAAAVLASRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VV + + L A + K ++A+TG++GK+S V Q+ +R + F G Sbjct: 80 IVVPDVQAALGALARHVVRKLGTTLVALTGSAGKTSTKDLVAQVLRRKAPTVFTPG---- 135 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHR-LDGIKLIA-GSF 209 + +N + P L+ LS+ T V E + G+ R L G+ G Sbjct: 136 ----SLNNEIGLP--------LTALSATEETRFLVLEMGARGIGHIRYLTGLTPPKIGLV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKRAHNAGCRV 267 N+G HI ++ AK L E L E AI+ ADD + + R RV Sbjct: 184 LNVGTAHIGEFGGREQIAQAKGELVEALPSAEEGGAAILNADDPLVRAMASRTK---ARV 240 Query: 268 LSVGYQGK 275 + G G+ Sbjct: 241 ILFGESGE 248 >gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus DSM 14484] gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus DSM 14484] Length = 422 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 53/286 (18%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT GKS+ I + S S + + P SYL Sbjct: 87 IAITGTDGKSTTTRLSYLILR------------SYFSHVEEGGNIGVP--------FSYL 126 Query: 178 SSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + ++V E SS L + G+F N DH+D+H + Y +K +F Sbjct: 127 VMKNPKALAVLEVSS--FQGKTLKTFRPHVGAFLNFSEDHLDWHPDLRDYLWSKYNIFSR 184 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 P E ++ +++ A GC H+K+ A +++++ Sbjct: 185 QTP-EDWILLNGTQKVTRDTPSPARKVFFGDGCEA----------HVKEDGAYWSEEKL- 232 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 SVE L G+ +YNALVA + +G+ + + E L +P R E VG + Sbjct: 233 FSVED------IKLIGKHNLYNALVACVIGRIMGVPTDRMKEVLRDFRGLPHRLELVG-D 285 Query: 353 SRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 G +Y D T+ N+L+ L ++ GR+I++ G +D+G Sbjct: 286 FGGVLVYNDSKSTTPNALQAALG---SMPDGRVILI---AGGKDKG 325 >gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate-D-alanyl-D-alanyl ligase [Listeria monocytogenes FSL J2-064] Length = 392 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 58/311 (18%) Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLS 143 P+++V++T L A++ + ++A+TG++GK++ + I + + G Sbjct: 16 PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 75 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + IG TI + +D + + G+ H +H ++ + Sbjct: 76 NNHIGLPYTILTMPEDTEVA-------------VLEMGMNH-----------RHEIEVLS 111 Query: 204 LIAGS----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 IA TN+G HI+Y +++ AK+ + L P S +IY + + ++ Sbjct: 112 KIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNP--SGILIYP---HEETLLLG 166 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------DFLFPLPGEFQ 311 N R L+ G K A ++ EG F + P+ GE Sbjct: 167 NINGDFRQLTFG--------KSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHN 218 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370 V+N + A IGI+ + L+ + R E++ T S G RI D Y + +L+ Sbjct: 219 VFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKS-GARILNDAYNSSPTALK 277 Query: 371 MILKNIRTITS 381 +LK + S Sbjct: 278 TVLKTFMHMDS 288 >gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1] gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1] Length = 449 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 117/273 (42%), Gaps = 28/273 (10%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A++G+ GK++ S + I +GL PT I Q T S L K+ + Sbjct: 109 IAISGSHGKTTTTSMISHISHIAGLD-----PTVLIGGILQ----TFGSNAVLGKSELLI 159 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S EA +L+ + + TN+ ++HI Y++ + A ++ + Sbjct: 160 S---------EADESDGSFLKLNSVINVV---TNIDKEHIGYYKDYEDIKEAFVKFINNV 207 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 P +++ DD + ++ + H ++++ G + K + + + + +G Sbjct: 208 -PFYGASVVNIDDTGVRSILSKIHK---KIITYGIESGDFQAKNIVFNSDNTRFDVFYKG 263 Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + + +PG VYNAL + + + I+ ++ + L+ R EFVG + Sbjct: 264 IKLNTIELQIPGIHNVYNALASIAVSTLMEIEQPVIRDALKSFKNAKRRIEFVGEKNT-N 322 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR-IIVVF 388 IY DY H ++ + + +++ + I+VVF Sbjct: 323 LIYDDYGHHPTEIKSVYEALKSKYKDKNIVVVF 355 >gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR] gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR] Length = 890 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 104/253 (41%), Gaps = 28/253 (11%) Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VC 283 NA RL + + IIY A ++R AG ++V + F+ K V Sbjct: 609 LNADDRLASYVASRCRGNIIYFSRASDNITIRRHLGAGG--MAVFVKNGFVVYAKGNHVV 666 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL----EKL 339 I + + + ++ G+ V N L A+ C+ +GI A + E L L Sbjct: 667 KIASVKSIPCTLSGQAL---------HNVENVLAASAGCLGLGIPVAQIKEGLLSFEPGL 717 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399 PGR F G ++ VDY H + +L + + R+I V G GDR Sbjct: 718 KGNPGRLNFF--EVAGVKVLVDYGHNPAGYQSVLATAKKMKHKRLIGVIGVPGDRQDDII 775 Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRT 451 +G+IA D I+ +D +PR P ++ + + G+ G I A+ Sbjct: 776 IKVGQIAGQGFDKIIIKEDADPRGRKPGEVASLLKKGVQAGGCSGKDVIIILKEINAVLK 835 Query: 452 AIEMLNKQDVLVV 464 A+E+ + D++V+ Sbjct: 836 AVEIAERGDLVVI 848 >gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus Rock3-42] Length = 460 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/328 (19%), Positives = 135/328 (41%), Gaps = 39/328 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V DS++I+ G +FV I+ K DGH ++ +A+ GA A + +Y T Sbjct: 32 EIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYVKEAMDNGAVASLWKKSY------GTPPK 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141 PI+ VD+T L A + ++ +TG++GK++V ++ I + + G Sbjct: 85 GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 144 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + QIG TI +D +L + + ++S A Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T +G+ H++ +++ AK+ + + L +E+ +Y D + Sbjct: 189 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLLSRNNKTS 242 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + C+ S + L ++ V + + PL G+ ++N +V + Sbjct: 243 SVNCKTFS---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 299 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + E L+++++ RF+F+ Sbjct: 300 GQFYKVSTEKIQEALQQINITQMRFQFL 327 >gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans Nor1] gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans Nor1] Length = 460 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 96/423 (22%), Positives = 166/423 (39%), Gaps = 67/423 (15%) Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 EAIVVSSA + + + +L A R E I A+ G GK++ Sbjct: 66 EAIVVSSAIPESNPEIRAAREQGLKIFHRADIVAALMAER------EGI-AIAGAHGKTT 118 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 S + + +++GL PT I + Y+ Y + ++ E Sbjct: 119 TTSMIALVLEKAGLD-----PTVLIGGELE----------YIGGNAKYGKGR---YLVAE 160 Query: 189 ASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 A D+ +KL TN+ DH+D+++T + ++ PK+ A++ Sbjct: 161 A-----DESDGSFLKLTPRLAVVTNIENDHMDFYETMENILFTFKEFLYKIHPKDGLAVL 215 Query: 247 YADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTISVEGK 298 D++Y + + + R + + + + I + I HN+ TI + Sbjct: 216 CFDNSYIRNIAASLDRPYISYAINHDAEFTARNIRVHGPAIIYDAYRHNELLGTIRLN-- 273 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 +PG V N+L A + + +G+ + V + L RF+ T R I Sbjct: 274 -------VPGRHNVANSLAALAVGLHVGLTFSQVADGLASFLGAKRRFQ---TKGRVNGI 323 Query: 359 YV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIV 415 +V DYAH + L R + R+I VF R + R G+ A + ADI ++ Sbjct: 324 WVVDDYAHHPTEITTTLLAAREMRPKRLICVFQPHRYSRTKFLRSEFGR-AFEPADILVL 382 Query: 416 TDDNPRSEDP------EKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 TD P E P E I+ E+ + + +I N I R E+ D+++ G Sbjct: 383 TDIYPAGEKPIPGITGEVIKEEVERQTNRLVTYIPDRNNIA--RYLAEIAEPGDLIITMG 440 Query: 467 KGH 469 G+ Sbjct: 441 AGN 443 >gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 455 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I V+ DSR I G +FV I G + DGH F+ AI GA A + + + Sbjct: 21 ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +L V +T K + A K ++ +TG++GK++ V + + Sbjct: 71 -PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200 F + T ++F +N + P I K ++ + V + ++ + H L Q Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +I T +G HI++ ++ +AKM + + L +E IY D + +RA Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230 Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G+ IH + +H+ + G D +F P+ G V NA+ A Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287 >gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Olsenella uli DSM 7084] Length = 481 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 41/381 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V+ DSR G FVA G + DG+ F +A+A+ A +V++ A R Sbjct: 26 VRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARAA-TVVLTGPAPKGCAEAAERHG 84 Query: 90 TPILVV--DNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL-SSF 145 +L D+ +FL A +P+ ++ VTG+ GK++ + +GL + F Sbjct: 85 CALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVTGSVGKTTTKDMLA-----AGLRARF 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE--ASSHGLDQHRLDGI- 202 ++ +T +F +N + P L+ LS+ V V +H + RL Sbjct: 140 RV--HATAGNF--NNLIGLP--------LTLLSADPSDEVVVAEMGMNHAGELSRLAACA 187 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES------PAI-IYADDAYSKE 255 + TN+G HI ++++ AK + + P S P + + +D+ ++ Sbjct: 188 RPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDNDFAAL 247 Query: 256 VMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQVTIS-VEGKDFDFLFPLPGE 309 + A AG VL VG G+ + I + +S +G +PG Sbjct: 248 IEDEYAAPAGVEVLHVG--GRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMPGR 305 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 V + L+A +C +G+D L+ + ++ R E V R I Y + +S+ Sbjct: 306 HVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDDSYNASPSSV 365 Query: 370 EMILKNIRTIT-SGRIIVVFG 389 L + ++ +GR + V G Sbjct: 366 AAALDVLCSMACTGRRVAVLG 386 >gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44] gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44] Length = 460 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 134/338 (39%), Gaps = 60/338 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 G +AIV S+A IR + P +V + L S + + +AV G Sbjct: 63 NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L PT I YL + S G Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154 Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 H SV ++ DG +KL + TN+ DH+D+++T NA F E LP Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293 + AI+ D+ + VM R ++ G Y K IH +++ I Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ G+ +PGE V N+L A A C G+++ + + L K RFE G Sbjct: 265 NI-GR---ISLCVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + G + DYAH ++ L+ + + R+I VF Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355 >gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 481 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 28/373 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V +DSR I AG +FVA+ G + D H F+ + GA A ++S+ N Sbjct: 32 ITRVGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISN-------KDKCPKN 84 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P + +++TR L A + VTG++GK++V + I + + +G Sbjct: 85 LPAVCIEDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAA------VGE 138 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + T+ + +N + P + + L+ G+ H A + Q I LI Sbjct: 139 SHTLVTKGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQAN---IALI- 194 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 N R+H ++ T A + LP++ A+ D ++ + R A + Sbjct: 195 ---NNAQREHQEFMATVAAVAQEHADVIRA-LPQDGIAVFPGDSEFTD--LWRKAAADRK 248 Query: 267 VLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 VL + + N ++ ++ E G V NAL A+ + IA Sbjct: 249 VLDFVLSSTQTNASSAVGGKLLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIA 308 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 GI + E LE V GR + ++ I Y +S+ + ++ + Sbjct: 309 AGISLKKIQEGLESFQPVNGRMQAKTIDANHTLIDDSYNANPDSVRAAIDALKQSGNNAW 368 Query: 385 IVVFGCGGDRDQG 397 IV+ G DQG Sbjct: 369 IVLGDMGEVGDQG 381 >gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongensis MB4] Length = 879 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 38/376 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+++TGT+GK++V V I + G + +G T+T + D + A + Sbjct: 480 IVSITGTNGKTTVTRMVAHILKTYG---YTVGMTTTDGIYIDDKCIYKGDNTGPKSARTC 536 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQ--AYFNAKMR 232 L+ + + +E + G+ + L G TN+ DH ID T + A+ A Sbjct: 537 LADKNIDAAVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA--- 593 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV----CAIHNK 288 L E + + +++ ADD + + K+A G + Y + + A++ K Sbjct: 594 LVVEAVKDDGYSVLNADDPMTPYLAKKAK--GKIIYFSMYDNNLTVKRHIENGGIAVYVK 651 Query: 289 QQVTISVEGKDFDF--LFPLPGEF------QVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + V + G+ + +P + N+L A + + ++ + ++ + Sbjct: 652 EGVIVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFY 711 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGRF S R+ VDY H ++ +++ R + + R+I V G GDR Sbjct: 712 PDTTHNPGRFNLFNIGSF--RVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMD 769 Query: 397 GKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGN------RIEA 448 +G++ D I I D++ R ++ + G I G ++K N EA Sbjct: 770 SSIFKVGEVCGGGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEA 829 Query: 449 IRTAIEMLNKQDVLVV 464 ++ A+ D++VV Sbjct: 830 LKAAMHSAEAGDLIVV 845 >gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 455 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I V+ DSR I G +FV I G + DGH F+ AI GA A + + + Sbjct: 21 ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +L V +T K + A K ++ +TG++GK++ V + + Sbjct: 71 -PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200 F + T ++F +N + P I K ++ + V + ++ + H L Q Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +I T +G HI++ ++ +AKM + + L +E IY D + +RA Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230 Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G+ IH + +H+ + G D +F P+ G V NA+ A Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287 >gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC 2396] Length = 448 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 164/378 (43%), Gaps = 59/378 (15%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++DSR +G +FVA+ G++ DGH +I A++QGA A V++ A + D + I ++ Sbjct: 28 VTTDSRADCSGALFVALKGDRFDGHEYIDAAVSQGAVA-VMAQAKANADVAQIIVPDS-- 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----ASFVQQ---ICQRSGLSSF 145 + + +L SR G + AVTG++GK++V AS + Q +C+ G + Sbjct: 85 --LAGLGRLGALNRSRFNGP----VAAVTGSAGKTTVKELLASILSQRGDVCKTQGNFNN 138 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 IG ++ +++R S + G + V A + L + ++ Sbjct: 139 HIGVPLSLLQLTEEHR-------------SAVFELGASAVGEIAYTVALARPQV------ 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAG 264 N H++ + AK + LP++ A++ DDA +S V AG Sbjct: 180 -AILNNAAAVHVEGFGDLASIVKAKGEIVCG-LPEDGVAVLNKDDANFSAWV----EMAG 233 Query: 265 CR-VLSVGY------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 R V+S G + + IHL+ N +S D PLPG V NAL Sbjct: 234 ARKVISFGLDDSAMVRAQNIHLEL-----NGSTFRLSAPEGGIDATLPLPGAHNVRNALA 288 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTSNSLEMILK-N 375 AA +A+G V + L V GR + +G N G + +D + ++ M + Sbjct: 289 AAAAALALGWTLEEVRDGLASAAPVKGRMNKLLGIN---GSVILDDTYNASPTSMKAAID 345 Query: 376 IRTITSGRIIVVFGCGGD 393 + GR IV G G+ Sbjct: 346 VLARYPGRRIVALGHMGE 363 >gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Alkaliphilus metalliredigens QYMF] Length = 457 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 35/330 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 IN VS D+R I+ +++ I+G K +GH FI +A+ GA A +L D + I + Sbjct: 27 INGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGATA-------TLWDKNQPIPNI 79 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P ++V++T + A + I+ +TG++GK+S + I Q + +G Sbjct: 80 DFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDILFNILQTVYKTHKTLG 139 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAG 207 +N L P L+ L T ++V E GL + L + IA Sbjct: 140 NL--------NNHLGVP--------LTLLEMAENTEIAVIEMGMSGLGEIEL--LSKIAS 181 Query: 208 S----FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 S TN HI+ + + AK+ + E L P IY D+ V + Sbjct: 182 SDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKP--HGLFIYFGDSPPLRVGVEKLDL 239 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLC 322 + ++ G + K+ + N + + + G D LF + G Q+YNA A + Sbjct: 240 KQKKVTFGINRDNDYTVKLISSEN-EGIYFELVGSDSPRLFLSMLGNHQIYNAAAAIAVA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 I + E + K+ R E + N Sbjct: 299 QYFNITLEKIQEGMLKIEATGMRNELIKCN 328 >gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27] gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27] Length = 460 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 132/338 (39%), Gaps = 60/338 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 G +AIV S+A IR + P +V + L S + + +AV G Sbjct: 63 NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L PT I YL + S G Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154 Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 H SV ++ DG +KL + TN+ DH+D+++T NA F E LP Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293 + AI+ D+ + VM R ++ G Y K IH +++ I Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ +PGE V N+L A A C G+++ + + L K RFE G Sbjct: 265 NIS----RISLRVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + G + DYAH ++ L+ + + R+I VF Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355 >gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris StLB046] Length = 456 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/366 (22%), Positives = 150/366 (40%), Gaps = 31/366 (8%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K ++ L+I + E + VS D+R I G +F+ G +GH F+ QA +GA Sbjct: 3 KSLQQIAEWLTIENQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGA 62 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A S + + + + ++ P++ V++ L A +H + +TG++GK+S Sbjct: 63 AA----SLWMIDEPNPP--AHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTS 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + +G S TI +F +N+L P I L V+ + + Sbjct: 117 SKDIL------AGALSPYFKVQKTIGNF--NNQLGLPITI-----LQLDEDTEVSVLEMG 163 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 S G + + + TN+G H+ +++ AK + + L E + Y Sbjct: 164 MSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAKFEIVKGL--SEEGILFYD 221 Query: 249 DDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305 D V K H + + G+ + ++L Q + VEG DF Sbjct: 222 GDEPLLQNLVAKTPH---LKTQAFGFSQE-LNLAASQIKATAQGSSFHVEGLIQGDFFIS 277 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE QV N L A + ++G+ + E L+K+ + R + V G ++++ A+ Sbjct: 278 VLGEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQLVPV---GDLLFINDAYN 334 Query: 366 SNSLEM 371 + M Sbjct: 335 AAPTSM 340 >gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC 51599] gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC 51599] Length = 489 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 64/302 (21%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V I ++GL +F IG ++S + RL + Sbjct: 108 VAIAGTHGKTTTTSLVASILAKAGLDPTFVIG--GRLNSAGVNARLGSGD---------- 155 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ VEA D L+ + +IA + TN+ DH+D + A F Sbjct: 156 -------YIVVEADES--DASFLNLLPMIA-AVTNIDADHMDTYGHDMARLKQAFVDFLN 205 Query: 237 LLPKESPAIIYADDAYSKEVMK----------RAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 LP A++ DD + +E++ +A R + V +G +H + + Sbjct: 206 RLPFYGSAVLCLDDPHVREIVPFVSKPTITYGLGEDAQVRAVDVRAEGDRMHFQVLRENE 265 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +V+++ L GE V NAL A + +G+ + ++ L + V RF Sbjct: 266 PPLEVSLA-----------LSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRF 314 Query: 347 EFVG---TNSRGGR----------------IYVDYAHTSNSLEMILKNIR-TITSGRIIV 386 E G R GR + DY H +E L+ +R + R+++ Sbjct: 315 ERYGEVPVPVREGREGAQAGQTAAASGTFTLIDDYGHHPVEIEATLRAVRGAFPTRRLVL 374 Query: 387 VF 388 F Sbjct: 375 AF 376 >gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 441 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 130/312 (41%), Gaps = 43/312 (13%) Query: 83 SATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 S + SN PIL +K +S A L + I+AV+GT+GK++V + +I + + Sbjct: 65 SPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTDLISKIIKAA 124 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 S G I D L T T +++E SS+ L Sbjct: 125 HKDSIVSG---NIGCPLADKALKTTE---------------TTFITMELSSYQLGD--TP 164 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + N+ DH++YH+T +AY AK +F + I Y DD +++ ++ Sbjct: 165 DFRPAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINY-DDKICRKIFEKT 223 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALV 317 A V + K LKK ++ + I+V+ K + + P + G + N L Sbjct: 224 KAA------VIFFSK-TPLKK-GVFYDSGSIVINVKEKHY-VIKPKINIVGTHNIENILA 274 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN------SLEM 371 A A G+ A++ + + K V R EFV T G Y + + ++N +LE Sbjct: 275 AVAASYAAGVKPAVIEKIVSKYKGVEHRIEFVKT--LNGVDYYNDSKSTNIDSTRVALES 332 Query: 372 ILKNIRTITSGR 383 KNI I GR Sbjct: 333 FDKNILIIMGGR 344 >gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 113/284 (39%), Gaps = 44/284 (15%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P ++AVTG++GKS+ A+ + I +G + G + + Sbjct: 119 PPRVIAVTGSNGKSTTAALIHHILTEAGREAQLAG--------------------NIGRG 158 Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G V V E SS+ + R + FTNL DH+D H YF AK R Sbjct: 159 VLDIDPGGDGSVVVLELSSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRR 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKR-AHNAG-CRVLSV-------GYQGKFIHLKKVC 283 LF E P A+I D+ + + A AG RV+ V G + K Sbjct: 217 LFSEGGPDR--AVIGVDEIEGAFLAGQLAEGAGDDRVIRVSVARKLAGPGWQVFARKGFL 274 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + + K + S++ +D LPG NA A C A+G+ ++ + L +P Sbjct: 275 SEYRKGRQAASIDLRDIKG---LPGTHNHQNACSAYAACRALGLAPKMIEDALHSYPGLP 331 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTITSG 382 R + + + G +V+ + +N + K IR I G Sbjct: 332 HRSQVIAEAN--GVTFVNDSKATNVDSAVKALGAFKKIRWICGG 373 >gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33] Length = 609 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/369 (21%), Positives = 155/369 (42%), Gaps = 51/369 (13%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 174 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 228 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA +V + I+ + V+D L A++ K ++ +TG+ Sbjct: 229 LDKGASLVVADNT--------NIKDKRVVKVIDTIATMQDL-ATKYRKKLDIQVVGITGS 279 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V L S + T ++ +N + P + L+ + Sbjct: 280 NGKTTTKDIVYS------LLSTKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 326 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E + K + Sbjct: 327 VLEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKKNT 385 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD Y V VG+ + + NK + ++GK+++ Sbjct: 386 --FVCGDDEYL---------GKLDVNKVGFNENNDYKIESYEFSNKGSKFV-LDGKEYE- 432 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ + N + L IG+ + + L+++ + RF+ + G IY++ Sbjct: 433 -MSLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKI---GEDIYIND 488 Query: 363 AHTSNSLEM 371 A+ ++ + M Sbjct: 489 AYNASPMSM 497 >gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus sphaericus C3-41] Length = 455 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 48/349 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S D+R IQ G +FV G +GH ++ QA +GA A + Q Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGAGASL------WQKDEPNPPDG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142 P+L VD+ L A +H + +TG++GK+S + ++ + G Sbjct: 78 IPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGN 137 Query: 143 SSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + Q+G TI +D + + + +L+ H++V Sbjct: 138 FNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPHMTV-------------- 183 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 TN+G H+ ++ AK + + + P E D+ +E++ + Sbjct: 184 -------ITNIGEAHMQDLGSRAGIAQAKFEIIQGMQP-EGLLFYDGDEPLLQELVAKEQ 235 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVA 318 + ++ G + ++ + A N T +EG DF + G+ QV N L+A Sbjct: 236 H--INAVAFGLEPDNLLYADHIHANANGSSFTTHGMIEG---DFFISVLGKHQVKNTLIA 290 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTS 366 + +G+++ + LE + + R + V GTN G ++++ A+ + Sbjct: 291 MLISNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTN---GALFINDAYNA 336 >gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas fluorescens WH6] Length = 456 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F EL LS + + + + VS DSR I+ G +FVA+ G + DGH ++ A+GA Sbjct: 7 FSELSQALSARVLS-SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAAKGAVG 65 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V S P L+V +TR L + + + AVTG+SGK++V Sbjct: 66 ALVQCEVP--------ESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKTTVK 117 Query: 131 SFVQQICQRSG 141 + + + G Sbjct: 118 ELLAGVLRTRG 128 >gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735] Length = 825 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/365 (22%), Positives = 154/365 (42%), Gaps = 34/365 (9%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 KI V +DSR + +F A+ + DGH +IP+ +G VV+ + D+ AT Sbjct: 23 KIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRGVRNFVVTEVPA--DY-ATE 79 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-ICQRSGLSSF 145 + L V ++ + L A R + I+ +TG++GK+ V ++ Q +C + Sbjct: 80 YAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSNGKTMVKEWLNQLLCDDMFI--- 136 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 T S + ++++ P ++L L+ + G+ + L D I+ Sbjct: 137 ------TRSPRSYNSQVGVPLSVWL---LNEHTQVGIFEAGISQPGEMLALR--DIIQPT 185 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAYSKEVMKRAHN- 262 TNLG H Q+ + + +M+ E+L L ++ ++Y DD + + Sbjct: 186 IAVLTNLGDAH------QENFISKEMKCKEKLILFHDAKTVVYNGDDPIVNGCVNELEDF 239 Query: 263 AGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G R+ S+ + +K V VT +G + + P + V N+ A + Sbjct: 240 KGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSFACAAV 299 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK--NIRT 378 + +G+ ++ E +++L + R E V G + D Y NSL++ L N R Sbjct: 300 ALTLGVGVDVLDERMQQLEPIAMRLE-VKQGQHGCTLINDSYNSDINSLDIALDFMNRRP 358 Query: 379 ITSGR 383 GR Sbjct: 359 DHQGR 363 >gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS] gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS] Length = 494 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 126/318 (39%), Gaps = 43/318 (13%) Query: 59 FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F+ A A +GA+A+V S+A + I VV L RL + Sbjct: 54 FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALMLAELM--RL-----KQ 106 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V + +GL PT F RL + A A + Sbjct: 107 GIAIAGTHGKTTTTSLVASVLDAAGLD-----PT-----FVIGGRLNS------AGANAQ 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L S ++ VEA D L+ + ++A TN+ DH++ + A F Sbjct: 151 LGSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFAKLKKAFVDFLH 205 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291 +P AI+ DDA ++++ + C V S G+ Q + + ++ V +H Q Sbjct: 206 RMPFYGVAILCTDDAAVRDIVAQVT---CPVTSYGFGEDAQVRAVDVRAVGGQMHFTAQR 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 V D + LPGE V NAL + + +GI V L V RF+ G Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322 Query: 352 NSRGG-----RIYVDYAH 364 S G + DY H Sbjct: 323 VSVPGGTGSFTVIDDYGH 340 >gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG] gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF] gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78] gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-alanyl ligase [Streptomyces sp. Tu6071] Length = 473 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 34/247 (13%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V +DSR ++ G +FVA G + DGH + A+A GA A++ + + Sbjct: 26 RVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAAGAVAAGAVAVLATRPLGV-------- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VVD+ L A + + ++A+TG++GK+S + Q+ R G + + Sbjct: 78 ---PAIVVDDVTAALGALARTVVERLGTAVIAMTGSAGKTSTKDLIAQLLSRRGPTVWPP 134 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS-SQGVTHVSVEASSHGLDQHR-LDGIKLI 205 G +N + P L+ L ++ H+ +E + G+ R L + Sbjct: 135 G--------NLNNEIGLP--------LTALRVTEETRHLVLEMGARGIGHIRYLTSLTPP 178 Query: 206 A-GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + G N+G HI ++ AK + E LP+ A++ ADD + + R Sbjct: 179 SIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEA-LPESGLAVLNADDPLVRGMAPRTR--- 234 Query: 265 CRVLSVG 271 RVL G Sbjct: 235 ARVLLFG 241 >gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008] gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC 17745] gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008] gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC 17745] Length = 460 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/338 (25%), Positives = 132/338 (39%), Gaps = 60/338 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 G +AIV S+A IR + P +V + L S + + +AV G Sbjct: 63 NGVDAIVRSTA---------IREDNPEIVAAKEQGITILHRSDIVKAVLDVTDGIAVAGA 113 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK+S S + QI L PT I YL + S G Sbjct: 114 HGKTSTTSMIGQI-----LVEANADPTVIIGGEVD----------YLKGS----SCLGKG 154 Query: 184 HVSVEASSHGLDQHRLDG--IKLIAGSF--TNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 H SV ++ DG +KL + TN+ DH+D+++T NA F E LP Sbjct: 155 HFSV------VEADESDGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCE-FVETLP 207 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTI 293 + AI+ D+ + VM R ++ G Y K IH +++ I Sbjct: 208 EAGKAIVCGDNENIRYVMSRVKRT---FITYGLEDNNDYVAKNIHYVDSSLVYDVYHKGI 264 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++ +PGE V N+L A A C G+++ + + L K RFE G Sbjct: 265 NIS----RISLRVPGEHNVLNSLAAFIVAHEC--CGVENRFITKALGKFIGAKRRFETKG 318 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + G + DYAH ++ L+ + + R+I VF Sbjct: 319 -HVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVF 355 >gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs] gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs] Length = 882 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 22/206 (10%) Query: 207 GSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262 G TN+ DH ID T + + K + E + P E AII A+D +++ + +RA Sbjct: 569 GLVTNIDDDHMGIDGINTLEDMADVKSLVLEAIKP-EGYAIINAEDTFARRMAERARGNI 627 Query: 263 ---AGCR----VLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + C ++ QGK ++ KK+C +++ + +E + E + Sbjct: 628 VYFSQCDTNELIIEHKKQGKKAIYLKEKKICIFDGNKEIDV-IEIEKIPATLGGILEHNI 686 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVP----GRFEFVGTNSRGGRIYVDYAHTSNS 368 N+L A A+G+D + E L H GRF + ++ +DY H Sbjct: 687 ENSLCAVAATFALGVDIHRIYEGLRDFHTDAVHNMGRFNVFEVANF--KVILDYGHNIGG 744 Query: 369 LEMILKNIRTITSGRIIVVFGCGGDR 394 +L + + + R+I V G GDR Sbjct: 745 YNRVLNGLNKMKANRLIGVIGVPGDR 770 >gi|300813520|ref|ZP_07093855.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512366|gb|EFK39531.1| Mur ligase middle domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 286 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 27/231 (11%) Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 + ++HV +E SS R++ I SF NL R+HID H + + YF K ++ Sbjct: 4 KNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFRDKSKIILN-AK 62 Query: 240 KESPAIIYADD---------------AYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVC 283 K S A++ D+ +S E + LS G+ GKF+ H+ Sbjct: 63 KGSFALLNMDNEHIASLKEKTKASVLTFSMENLDSDFGISKLDLSTGF-GKFMFHV---- 117 Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 N+ I+++ + F+ G V N ++A L + + +D ++L L+ V Sbjct: 118 ---NRDIKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALKNFKGVE 174 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394 RFE + ++ D+ ++++ + + ++ + +++ G+R Sbjct: 175 RRFELIY--DEKFKVLDDHFANEKNIDVTMTTLSQMSYKNLHILYAIRGNR 223 >gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 146 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 16/126 (12%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 +I + DSR I G +F+ + G ED H F+ A+ GA A++V +++ Sbjct: 22 EITGLEMDSRKITDGDLFICVSGIDGFLEDRHQFVEDAVKNGAVALIVERDVNIE----- 76 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGL 142 P ++V + R +++ AS YG +P N ++ +TGT+GK++ + +++I G Sbjct: 77 ----IPKIIVKDARYAMAVIASHFYG-YPSNKMKLIGITGTNGKTTTSYLLEKILSDYGY 131 Query: 143 SSFQIG 148 + +G Sbjct: 132 HTGLMG 137 >gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces viridochromogenes DSM 40736] gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces viridochromogenes DSM 40736] Length = 475 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 35/209 (16%) Query: 64 IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + +G+E IV + + F+A R+ P+ A RL G LAVT Sbjct: 70 LPEGSELIVTAPGWKPDKPLFAAADRAGVPVW-------GDVELAWRLRGPDAAPWLAVT 122 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT+GK++ + I +GL + +G + L A+ L + Sbjct: 123 GTNGKTTTVQMLASILTAAGLRTAAVGNIG----------------VSLLDAV--LGEEP 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++VE SS+ L H ++ + + NL DH+D+H + +AY K R++E Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 218 Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 A +Y AD A V + GCR + Sbjct: 219 RVACVYNVADKATEDLVREADVEEGCRAI 247 >gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia akari str. Hartford] gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia akari str. Hartford] Length = 492 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 24/142 (16%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N +A+TGT+GKS+ + + I SGL +Q+ + P AKA Sbjct: 105 NFIAITGTNGKSTTTALISHILNSSGL-DYQVAGNIGV-------------PALQAKA-- 148 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S G +E SS LD ++ K+ N+ DH+D HQ Y AK ++F+ Sbjct: 149 --SKDGYV---LELSSFQLDLVKIFTAKI--AVLLNITPDHLDRHQHMNGYIAAKSKIFD 201 Query: 236 ELLPKESPAIIYADDAYSKEVM 257 + K+S A+I D+ Y +E+ Sbjct: 202 R-MDKDSYAVINIDNDYCREIF 222 >gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402 065] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGDLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G+ N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGAILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++K A C V++ G I + +K C + + K F Sbjct: 226 NIQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+ + N+L + + +A + ++E +E RFE G + I DYAH Sbjct: 279 VPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 + L + ++ VF Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360 >gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F str. Langeland] gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str. Langeland] gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str. 230613] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 53/323 (16%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++K A+ C V++ G I + +K C + + K F Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG+ + N+L + + +A + ++E +E RFE G + I DYAH Sbjct: 279 VPGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHH 337 Query: 366 SNSLEMILKNIRTITSGRIIVVF 388 + L + ++ VF Sbjct: 338 PTEISATLDAAKKYPHNKLFCVF 360 >gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina loihiensis L2TR] gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina loihiensis L2TR] Length = 463 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/332 (22%), Positives = 137/332 (41%), Gaps = 45/332 (13%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 A+ I+ S L++ + + I +V + + LFA K P I+AVTG++GK Sbjct: 79 AADLIIASPGIDLREDPVVLARDADIPIVGD----VELFAQE--SKLP--IVAVTGSNGK 130 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 S+V V+ + ++ G + A + P L L Q V Sbjct: 131 STVTRMVEFVAKQCG------------KNVAAAGNIGVPVLDLL------LQEQHPDAVI 172 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 +E SS L+ + +KL A + N+ DH+D + T Y AK R+F + A Sbjct: 173 LELSSFQLES--VSSLKLKAAALMNISADHMDRYCTLDEYVKAKQRIF-------THAKT 223 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--- 303 + + ++ H ++++ G H + ++ ++V L Sbjct: 224 WILNRQQQDTWP--HPVTGKLMTFGNDSHPKHFGLLSGNIDRVSGPVAVTFDGSVVLRAD 281 Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G + N A LC AI ID + +++ +P R E V N G ++V+ Sbjct: 282 QLQLQGIHNLVNVQAALALCQAIDIDIEAAVRAVKEFKGLPHRCELVSDNE--GVLWVND 339 Query: 363 AHTSN--SLEMILKNIRTITSGRIIVVFGCGG 392 + +N + ++ +R + +GR++++ G G Sbjct: 340 SKATNIGATAAAVEGLRPMINGRLLLIAGGVG 371 >gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae L20] gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|283768879|ref|ZP_06341790.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219] gi|283104665|gb|EFC06038.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219] Length = 458 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 47/337 (13%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTP-------ILVVDNTRKFLSLFASRLYGKHPEN 116 I Q AE I ++ Y L ++A I + P + + RK L A + +H N Sbjct: 58 IGQKAENI--TNKYKLVVYTAAIHPDNPEYQQAMKLNIPLMNRK--DLLAEVM--EHYHN 111 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKA 173 +A+ GT GK++ + + I + ++ PT +I + + N S +LA+A Sbjct: 112 SIAIAGTHGKTTTTAMLSYI-----FLAAELDPTISIGAHFKKIHGNVRIGHSEAFLAEA 166 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y +S ++ +A N+ DH+D+ + Q N+ Sbjct: 167 CEYTNS-------------------FLALRPLASIILNIEEDHLDFFKDLQDIRNS-FHQ 206 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVT 292 F E II++ + +E+++ H +V+ G + K + + H Q Sbjct: 207 FVLNTSSEGALIIHSQIDHVEEIVEGYHG---QVIQFGLNKGDLCAKNIQHLRHGGNQFE 263 Query: 293 ISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + + + P G+ + NAL A G+ I+ G+ + + L++ RFE G Sbjct: 264 VWMRSERLGSIELPTGGKHNITNALAAIGVAISFGVPFEAIQQGLKEFEGADRRFEKKGF 323 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 +G I DYAH ++ L + R+I+VF Sbjct: 324 -YQGAEIVDDYAHHPQEIQATLNMAKDYPHQRLIMVF 359 >gi|210634246|ref|ZP_03298044.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279] gi|210158882|gb|EEA89853.1| hypothetical protein COLSTE_01966 [Collinsella stercoris DSM 13279] Length = 263 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA RL PE A+TGT+GK++V S ++ + SGL+S +G + D R Sbjct: 103 FAWRL---SPERWCAITGTNGKTTVTSLTNELLRASGLASVAVGNIGNAAIHEVDRR--A 157 Query: 165 PSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 ++A+ SY +++ H V N+ DH+ +H+T Sbjct: 158 EGEWFVAELSSYQIATTAELHPRV-------------------AILLNITPDHLAWHRTH 198 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 + Y AK+ LF + + AI+ +D R + G RVL +G Sbjct: 199 ENYALAKIDLFRN-MDESDLAIVNVEDEGIAAFADRVYVPGRRVLKLG 245 >gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1] gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1] Length = 482 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 100/429 (23%), Positives = 168/429 (39%), Gaps = 68/429 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A+ +VVSSA + + I VV L R + +AV GT Sbjct: 73 AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125 Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179 GK++ S + + GL +F IG +++ + +L T S +A+A S+L Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235 Q + V + D + G F L + +++ Y A M L Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234 Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ + P + Y +S+E RA N V G Q F L++ C + + +S Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRRDC-----EPLEVS 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353 V +PG V NAL + GI +++ L V RF+ G Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIIQGLSGFQGVGRRFQVYGELPV 333 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 GG + + DY H + ++K +R S R+++V+ R R + L Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391 Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459 D + ++ + P E+ P ++ H I P +IE+G + + +L Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449 Query: 460 DVLVVAGKG 468 D+L+ G G Sbjct: 450 DILICQGAG 458 >gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134] gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134] Length = 878 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 147/377 (38%), Gaps = 38/377 (10%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TGT+GK+ VA V ++ Q LS G + F + Sbjct: 486 VVGITGTNGKTVVAKLVARLLQ---LSGKHTGLACSDGLFLDRRLVQGGDRANWDAGHRI 542 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYHQTQQAYFNAKMRLF 234 L ++ V E S + L + G TN DH+ DY+ + +R Sbjct: 543 LMNRAVEAAVFENDSGAILSEGLVYDRCQVGVVTNFDTPDHMGDYYVEDEDRMYNVLRTQ 602 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY------------QGK---FIHL 279 +++ K A++ A D + V++ A + V+ G +GK F+ Sbjct: 603 IDVVLKNGAAVLNARD---ERVVEMAELSDGDVIFFGLSADLPAIVAHRAKGKRAVFVRD 659 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 KV + ++ + + FQV N L A A+GI + L+ + Sbjct: 660 GKVVLTTGNSETPLT-DVAAIPVTYAGRVSFQVENVLAAVATGWALGISNDLIRAGIVTF 718 Query: 340 HV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395 V VPGRF N G + VD AH + +LE + + + R ++V+G G R Sbjct: 719 DVGQVDVPGRFTLFERN--GATVIVDDAHNAPALEALATALDRFPAERRMIVYGAGVQRR 776 Query: 396 QGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHG--IPGFIEKGNRIE 447 GK+ D + +D P +E ++ + G + I++G R + Sbjct: 777 DEDMVRQGKVIGATFDRVFLCEDRSVKGALPDAEARALLKQGLYEGRRVTKIIDEGTRQD 836 Query: 448 AIRTAIEMLNKQDVLVV 464 AI TA+ L D+LV+ Sbjct: 837 AIETALGQLVAGDLLVL 853 >gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. e14] gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. e14] Length = 473 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 37/213 (17%) Query: 64 IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + +GAE +V + + F A R+ P+ A RL G LAVT Sbjct: 70 LPEGAELVVTAPGWKPDKPLFQAAGRAGVPVW-------GDVELAWRLRGPDAAPWLAVT 122 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT+GK++ + I + +GL + +G + L A+ L + Sbjct: 123 GTNGKTTTVQMLAAILKAAGLRTAAVGNIG----------------VSLLDAV--LGEEK 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++VE SS+ L H ++ + + NL DH+D+H + +AY K R++E Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYE----GN 218 Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272 A +Y AD A V GCR +VG+ Sbjct: 219 RVACVYNVADKATEDLVRAADVEEGCR--AVGF 249 >gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] Length = 455 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS DSR + AG +FVA+ G + DGH ++ A+GA A +V + D P Sbjct: 28 VSIDSRSVSAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVADVDL--------PQ 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 L V + R L + + ++A+TG+SGK++V + I + GL Sbjct: 80 LQVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGL 129 >gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + AG +FVA+ G + D H F+PQ + AIV A ++ D P Sbjct: 26 VSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIV---AETVPD-----GLTVPA 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 L+V +TR L A + ++ VTG++GK++V + I + Sbjct: 78 LIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILE 123 >gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911] gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911] Length = 695 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/333 (22%), Positives = 134/333 (40%), Gaps = 26/333 (7%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163 LF+SR P ++AVTGT+GK++ + V+ ++ G + +G TS+ + + + Sbjct: 293 LFSSREEAAIP--VIAVTGTNGKTTTSRLVKHFIEKEGTT---VGLTSSDGVYVGEQCID 347 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 T A LS V +E++ G+ + L G TN+ DH+ + Sbjct: 348 TGDCSGPISARKILSHPKVDIAVLESARGGILREGLAFRHCDIGIVTNVSEDHLGLDGIE 407 Query: 224 Q-AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGK 275 A RL E++ + I+ ADD E +K A +V+ S G Q Sbjct: 408 DFAQLVKLKRLIPEVVIEGGYCILNADDP---ETLKMASYTKGKVIYTSLNEESEGSQRA 464 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + + + + Q+ + G +FL P+ + + + +A + Sbjct: 465 LEKGEPLWYLDSMGQIVYAEAGIKAEFLPAADVPVTINGRAKHNIANLLQALAAAAAQGV 524 Query: 332 VLEHLEK--LHVVP----GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 LE L++ L P R F +G I +DYAH + L + + R+I Sbjct: 525 SLETLKEKALSFTPDSRNSRGRFNAFLVQGREIIIDYAHNAAGLSAVFGTAADTKNKRLI 584 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418 + GDR M +I+ +D+ I+ +D Sbjct: 585 TILSAPGDRSDSDIARMAEISAGYSDLIIIKED 617 >gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 464 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|260462088|ref|ZP_05810332.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium opportunistum WSM2075] gi|259031948|gb|EEW33215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium opportunistum WSM2075] Length = 466 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 40/242 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 + +TGT+GKS+ + I + +G + Q+G + D P P Sbjct: 116 FIGITGTNGKSTTTALTAHILKSAGRDT-QMGGNIGRAVMTLD----PPKPD-------- 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 H VE SS+ +D I AG NL DH+D H T Q Y + K E Sbjct: 163 ------RHYVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYASIK----ER 210 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288 L+ AII DD++ ++ +R AG +V+ + GY +L + A+H + Sbjct: 211 LVAGSETAIIGIDDSWCAQIAERLERAGRQVIRISKRLPLTDGYFADGSNLME--AVHGR 268 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +EG + L G+ NAL A C+ +G++ + LE + R E Sbjct: 269 YSRVAFLEG-----IGSLRGQHNAQNALAAVAACLRVGLELGEIQSGLESFPGLAHRMEQ 323 Query: 349 VG 350 VG Sbjct: 324 VG 325 >gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis GM 1503] gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis GM 1503] gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis GM 1503] Length = 495 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 189 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 247 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 248 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 299 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 300 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 359 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 360 ISATLAAARMVLEQGDGGRCMVVF 383 >gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella grylli] gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella grylli] Length = 441 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 39/287 (13%) Query: 109 LYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167 L+ +H I+A+TG++ K +V S + ++ QR+ L+ + I A D L P P Sbjct: 93 LFAQHARAPIIAITGSNAKGTVTSLIGKMIQRAHLN---VAVGGNIGKPALD-LLNEPVP 148 Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227 + +E SS L+ KL S N+ DH+D H+T AY Sbjct: 149 DFYV---------------LEISSFQLETTYSLRPKL--ASILNISPDHLDRHKTLTAYI 191 Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 NAK R++ + A+ DD + + +++S G H + ++N Sbjct: 192 NAKQRIYHQ----ADIALWNRDDLNTFPQARTK-----KIISFGLTTTTPHAHEF-YLYN 241 Query: 288 KQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 Q +G D D LF + G NA+ A + AIG+ + +L L + +P Sbjct: 242 SHQKNFIAKGHDRLLPVDALF-IQGRHNWANAIAALTIGHAIGLPTKAMLTALCEFKGLP 300 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFG 389 R ++V +G Y D T+ + L + SG+II++ G Sbjct: 301 HRCQWV-KEFKGVTWYNDSKATNVGATLAALNGLGPSISGKIILIAG 346 >gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 110/282 (39%), Gaps = 35/282 (12%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ ++H+DY+Q+ F+ FE L P E A+ DD ++ + NA Sbjct: 180 TNVDQEHLDYYQS----FDQLKAAFERFLTSVPPEGLAVACLDDPELSNILP-SLNAPHW 234 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAI 325 + V A ++ + GKD F+ +PG V NAL + Sbjct: 235 TYGFSPAADVVG-SDVSAEGLSTSFSVRLRGKDIGTFVLNVPGVHNVLNALATIAVAHHF 293 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+++ E LE+ V RF VG G RI DY H + + L R R + Sbjct: 294 GLEAECAREALERFRGVGRRFTQVGEEG-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRL 352 Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440 VV R R ++ + A LAD+ ++ + E P I GI G F Sbjct: 353 VV-AFQPHRFSRTRDLLSRFASAFQLADVLVLGEIYGAGESP-------IAGITGRRLFD 404 Query: 441 E-----------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 E G++ E I + +L D+L+ G G T Sbjct: 405 EIRTSFENEAYFAGDQSEMISRLMTILKPGDLLITMGAGDVT 446 >gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase protein [Sinorhizobium meliloti 1021] gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Sinorhizobium meliloti 1021] gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sinorhizobium meliloti BL225C] Length = 477 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA +V Sbjct: 9 DLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A A R P++VVD+ + + + I+AVTG+ GK++ Sbjct: 69 VSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSG 141 ++ + G Sbjct: 125 LRHVLSPLG 133 >gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum thermopropionicum SI] Length = 469 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 57/377 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ VS+D+R ++ G IF A+ G + D H F+ QA GA +VVS +A + + Sbjct: 26 LSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQAAGAGAGCLVVSR-------TADLPAG 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+L V+NT L A+ ++AVTG++GK++ I S ++ Sbjct: 79 VPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKTTTKDMTASIL------STRLRT 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA-- 206 + +F +N + P L+ L ++ VE + G + +D + IA Sbjct: 133 LKSEGNF--NNEIGLP--------LTLLRLDETCEIAVVEMAMRGAGE--IDALCRIAKP 180 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 TN+G H++ T AK + E +P A++ A+ + + R Sbjct: 181 DCAVITNIGEAHLELLGTVSNIAAAKGEVLEH-IPAGGFALLNAEAPFIRREAGR----- 234 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNK----------QQVTISVEGKDFDFLFPLPGEFQVYN 314 CR GK I+ C + + + ++G+ +F P+PG V N Sbjct: 235 CR-------GKVIYYGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMN 287 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 AL A G+ +G+ V L + + R E + ++ RI D Y S + L Sbjct: 288 ALAAIGVARELGLTWEEVARGLAAVTLTGMRLEII--EAKNLRIINDAYNANPASAKAAL 345 Query: 374 KNIRTITSG-RIIVVFG 389 + ++ + G R + V G Sbjct: 346 QVLKEMAGGRRAVAVLG 362 >gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841] Length = 822 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 50/372 (13%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ + +DSR + +F A+ + DGH +IP+ +G + VVS +D ++ Sbjct: 23 EVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRL--PEDMTSCP 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +N L V + K L A R ++ +TG++GK+ V ++ Q+ Sbjct: 81 DAN--FLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQL---------- 128 Query: 147 IGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + P T S + ++++ P ++ L+ S G+ + S G + I+ Sbjct: 129 LSPERRVTRSPRSYNSQIGVPLSVW---NLNEKSEVGLFEAGI--SEPGEMEALQSVIQP 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FT LG H + + + K++LF K++ ++Y M A AG Sbjct: 184 TIGVFTCLGDAHQENFTSYEQKCMEKLKLF-----KDAKVLVYD--------MDDACVAG 230 Query: 265 CRVLSVGYQGKFIHLKK--------VCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVY 313 C V ++G++ + + ++ ++ T+ +GK+ P E + Sbjct: 231 C-VNRSAFKGEYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLA 289 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N++ +C+ +G+ + + L V R E S I Y NSL++ L Sbjct: 290 NSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIAL 349 Query: 374 K--NIRTITSGR 383 N R +GR Sbjct: 350 DFMNRRPDCAGR 361 >gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMAAKILQK 125 >gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter capsulatus SB 1003] gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter capsulatus SB 1003] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 109/280 (38%), Gaps = 44/280 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 + +TG++GKS+ + + I + +G ++ G I D L P + Sbjct: 123 VCITGSNGKSTTTALIHHILKHAGRATQMAG---NIGRGVLD--LDPPEDGEV------- 170 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 V +E SS+ D R + FTNL DH+D H YF AK RLF E Sbjct: 171 -------VVLELSSYQTDLAR--ALTPDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEG 221 Query: 238 LPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNK 288 P A+I D+ ++ M + RV S G F K A K Sbjct: 222 APDR--AVIGVDEPEGVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRK 279 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + S+ D + LPG NA A C ++G+ L+ E +P R + Sbjct: 280 GRQVASI---DLRGVKALPGAHNHQNACAAYAACRSLGLAPKLIEEAFHSFGGLPHRSQT 336 Query: 349 VGTNSRGGRIYVDYAHTSN------SLEMILKNIRTITSG 382 + RG R YV+ + +N +LE NIR I G Sbjct: 337 I-AEKRGVR-YVNDSKATNVDSAAKALEA-FSNIRWIVGG 373 >gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium tuberculosis K85] gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium tuberculosis K85] Length = 437 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 131 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 189 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 190 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 241 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 242 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 301 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 302 ISATLAAARMVLEQGDGGRCMVVF 325 >gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 133/357 (37%), Gaps = 51/357 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR I G +FV + G + DGH F + GA A + ++L + Sbjct: 27 VQGVVTDSRQITKGCLFVPLAGERFDGHDFASDCLQAGAGACL----WALSKGTPP---- 78 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-------QQICQRSGL 142 P ++VD+T L A + ++ +TG++GK++ V ++ + G Sbjct: 79 GPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKDLVYALLSTTYKVHKTKGN 138 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA-LSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + IG TI + +D + + + LS G +V Sbjct: 139 FNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEPETAV-------------- 184 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 TN+G H+ +++ AK+ + + P IY D + ++ + Sbjct: 185 -------VTNIGESHLLQLGSREEIARAKLEILAGMKP--GGLFIYNGD---EPLIPKVL 232 Query: 262 NAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYN 314 V G Q L+ + Q + G + D L PL GE V N Sbjct: 233 AEPSTVKPEGLQTATFGLRPENDQYPTGILFTDHQTLFTPHGSEGDPLELPLLGEHNVSN 292 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 AL A + G+ A + E K+ + R E + R G ++ A+ ++ M Sbjct: 293 ALAAITVARHYGVGEAAIREGFSKVELTGMRIEVI--TGRSGITILNDAYNASPTSM 347 >gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis glossinidius str. 'morsitans'] gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis glossinidius str. 'morsitans'] Length = 455 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 34/365 (9%) Query: 30 INEVSSDSRHIQAG--WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 I V +DSR A +FVA+ G + D H F QA+A GA A++V+ L Sbjct: 24 ILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNRRLPL-------- 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P LVV +TR+ L + + + P ++A+TG+SGK+SV I ++ G Sbjct: 76 -DVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGRV---- 130 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +T +F D + P+ L L + + + A+ G D ++ Sbjct: 131 --LATEGNFNNDIGV----PLTL---LRLTPAHDFAVIELGANHLGEIAWTTDLVRPETA 181 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHNAG 264 NL H+ + AK +F LP I+ AD + ++V+ H A Sbjct: 182 LVNNLSAAHLAGFGSLSGVAQAKGEIFAG-LPANGCGILNADSHDWPHWQQVL--GHKAV 238 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 R G + + + T+ + PLPG+ V NAL A L ++ Sbjct: 239 WRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALALS 298 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSG 382 +G + V L +L VPGR + + GR+ +D ++ +N S+ + + + Sbjct: 299 VGAELPAVAAGLAQLQAVPGRLFPIALGA--GRLMLDDSYNANVGSMTAAAQVLAEMPGY 356 Query: 383 RIIVV 387 R++VV Sbjct: 357 RVMVV 361 >gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis H37Rv] gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis CDC1551] gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis AF2122/97] gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis H37Ra] gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis F11] gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis H37Ra] gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis 02_1987] gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis EAS054] gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis T85] gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis KZN 1435] gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis C] gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis str. Haarlem] gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis 02_1987] gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis EAS054] gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis T85] gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis 210] gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis KZN 4207] gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis KZN R506] gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu001] gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu002] gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu003] gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu004] gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu005] gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu008] gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu007] gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu009] gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu010] gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu011] gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu012] gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis KZN V2475] gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis H37Rv] gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis CDC1551] gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis AF2122/97] gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis C] gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis str. Haarlem] gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis H37Ra] gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis F11] gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis KZN 1435] gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis 02_1987] gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis EAS054] gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis T85] gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu001] gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu002] gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu003] gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu004] gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu005] gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu007] gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu008] gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu009] gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu010] gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu011] gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis SUMu012] gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis CDC1551A] gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium tuberculosis W-148] gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis KZN 4207] Length = 494 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382 >gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Sphingobacterium spiritivorum ATCC 33300] Length = 813 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 144/346 (41%), Gaps = 39/346 (11%) Query: 36 DSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPI 92 DSR I + +F A G ++DGHL+I A +G V+ +D ++ + I Sbjct: 31 DSRKIAHEKLGVFFAFTG-RQDGHLYIQDAYNKGVRNFVLE-----KDAEQEVQMPDANI 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V N+ L A + ++ +TG++GK+ V ++ Q+ + P Sbjct: 85 LWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKTIVKEWLFQL----------MSPEYK 134 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211 I + + S + +A +L LS+Q + SH + RL+ IK G TN Sbjct: 135 IYRSPK----SYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEAMIKPTYGVLTN 190 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 +G H ++ K+RLF K++ +IY A E ++ + R LS G Sbjct: 191 IGIAHQQGFASKLEKTEEKLRLF-----KDAETLIYP--AKYLEAVQIPYKP--RKLSWG 241 Query: 272 YQGKFIHLKKVCAIHNKQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + + +V +I + VT+ GK F P + NA+ + + G Sbjct: 242 EEED--NQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAMENAITCVAVMLRFGY 299 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 D+AL+ E + L V R E + I Y++ SL++ L Sbjct: 300 DTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIAL 345 >gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfatibacillum alkenivorans AK-01] Length = 472 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 162/365 (44%), Gaps = 35/365 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 ++ DSR + +F+AIVG + DGH F+ QAI G IV+ ++ + FS + + Sbjct: 32 IAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGGVRGIVIDKKHA-ESFSYARMAKLEL 90 Query: 93 --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +VV +T + L A++ +I A+TG++GK++ + + +++ Sbjct: 91 GCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGKTTTKELTAAVLA----AKYRVHK- 145 Query: 151 STISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGI-KLIAG 207 S+ +N++ P + + L A + + G+ H A RL I + G Sbjct: 146 ---STGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIA--------RLTQICEPDIG 194 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN+G H++ + + AK L E + K A++ DD + + G V Sbjct: 195 VITNVGPGHLEGLGSVEGVLAAKGELLENMANK--TAVLNLDDKLVSTLADKYQ--GETV 250 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 L + K + + + T+ ++ ++ L G+ V+NAL AA + ++ G+ Sbjct: 251 LFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAAAAVGVSAGV 310 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLE-----MILKNIRTITS 381 + + LE ++ V GR V S G + +D A+ +N M L+ + + Sbjct: 311 SPKEIRDALETVNPVKGRQNVV---SLGNDVQLIDDAYNANPASFAAAVMTLQALAKASK 367 Query: 382 GRIIV 386 GR+I+ Sbjct: 368 GRMIM 372 >gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase [Limnobacter sp. MED105] Length = 468 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 13/108 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 + +DSR ++ G +FV ++G + D H F Q + GA A+V + L PI Sbjct: 37 IQTDSRLVEKGDLFVCLIGERFDAHDFAGQVMKSGAAALVTNRVLDL-----------PI 85 Query: 93 --LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 VV++TR L AS + +LAV G++GK++ + IC+ Sbjct: 86 HQFVVNDTRLALGALASAWRQQFDLKVLAVVGSNGKTTSKEMLGGICK 133 >gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis 94_M4241A] gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis 94_M4241A] gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis 94_M4241A] Length = 494 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382 >gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4] gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4] Length = 461 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/333 (23%), Positives = 132/333 (39%), Gaps = 41/333 (12%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118 P +A E +VVSSA I+ + P L+ R+ + L + + Sbjct: 61 PANLAPETELVVVSSA---------IKPDNPELLAAREREIPVIRRGELLAWVMRDYRGI 111 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AV G GK++ + V + GL PT + + P+ Sbjct: 112 AVAGAHGKTTTTAMVANVLLAGGLD-----PTVLVGGY---------WPLIEGNCRLGKG 157 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S VT +S L + + TN+ DH+DY+ +A A R F + Sbjct: 158 SYFVTEADESDASFLL-------LTPMLAVVTNIENDHLDYYGNLEALLGA-FRTFLARI 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEG 297 A++ D ++++ + V++ G + G LKKV + + G Sbjct: 210 EPPGTAVVCLDSPLVRQLIGVLN---IPVITYGMEEGADYILKKVELSGSSSSALLYYRG 266 Query: 298 KDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 + L LPG+ + NA A + +G+ A+ + L + V RFEF+G GG Sbjct: 267 RLLGQLKLNLPGKHNLLNAAAAVAVGAYLGVPFAVASQALAEFRSVRRRFEFLG--EAGG 324 Query: 357 RIYV-DYAHTSNSLEMILKNIRTITSGRIIVVF 388 + V DYAH ++ ++ R I GR++VVF Sbjct: 325 VMVVDDYAHHPTEVQATIEAARQIHRGRLVVVF 357 >gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis T46] gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis T46] gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis T46] Length = 494 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 188 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 246 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382 >gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacterales bacterium Y4I] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 7/112 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + ++ Sbjct: 23 VSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEKGAGAALVSR------VPEGVPAD 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P+L+VD+ + L + ++AVTG+ GK+S + ++ G Sbjct: 76 APLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTKEMLARMLSDQG 127 >gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena XCL-2] gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena XCL-2] Length = 461 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 45/370 (12%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 + ++ +VVS+A + + + I V+ L R +G +A+ GT G Sbjct: 63 KNSDVVVVSTAIAKDNPEVCFAKESRIPVIPRAAMLAELMRMR-FG------IAIAGTHG 115 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S I GL +F IG ++ F + RL + S +A+A S H Sbjct: 116 KTTTTSLASAILTEGGLDPTFVIG--GKLNQFDSNARLGS-SQYLIAEADE--SDASFLH 170 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +S S TN+ DH++ +Q A F LP A Sbjct: 171 LSPMMSV-----------------VTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVA 213 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FD 301 I+ DD + ++ + ++ + G+ + ++ +H + +V+ D F Sbjct: 214 IVCIDDQNIQNMLPKLSR---KIRTYGF-SESADIRATEVLHQGLSMHFNVKANDLPEFS 269 Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---I 358 + PG+ V NAL A + + + + + + L V RFE + S G + + Sbjct: 270 VVLNQPGKHNVLNALAAITVALELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTL 329 Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415 DY H LE L R R+++VF R R + + AL AD+ ++ Sbjct: 330 VDDYGHHPTELEATLSTARMAFPEKRLVLVFQP--HRYSRTRDLFDEFVQALQHADLLVL 387 Query: 416 TDDNPRSEDP 425 D P E P Sbjct: 388 LDVYPAGEAP 397 >gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae bacterium IMCC9480] gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 501 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 64/361 (17%) Query: 102 LSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + LFA L E ++A+TGT+GK++V S +C+R+GLS G S Sbjct: 105 IELFAQALAALREERGYAPKLIAITGTNGKTTVTSLTGLLCERAGLSVQVAGNIS----- 159 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215 PS + + + L S + V E SS L H ++ + N+ +D Sbjct: 160 --------PSALDVLR--QCLDSDSLPQAWVLELSSFQL--HTTHSLQADVATVLNITQD 207 Query: 216 HIDYHQTQQAYFNAKMRLFE----ELLPKESPAIIY------------ADDAYSKEVMKR 259 H+D+H Y K R+F +L ++ A++ +D+A S + Sbjct: 208 HLDWHGDMACYVADKARIFGTDTIRVLNRDDAAVMQLASTGTAPVTFGSDEALSPDCFGL 267 Query: 260 AHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + G + L+V + + +V A+ +K+ + + G+ Sbjct: 268 LNENGMQWLAVAIEAEAEKKPTKRGPAEVRAVSSKRLMPADA--------LKIRGQHNAL 319 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI- 372 NAL A LC AIG+ A +L L H P R E V T + G Y D + +N + Sbjct: 320 NALAALALCRAIGLPLAPLLHGLRDYHGEPHRVELVTTLA--GVTYFDDSKGTNVGATVA 377 Query: 373 -LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 L + G+++++ G G + Q P+ +A + + ++ +D + IRA Sbjct: 378 ALTGLGLQQQGKLVLIAG-GDGKGQDFTPLAAPVARHVRAVLLI------GKDADAIRAA 430 Query: 432 I 432 + Sbjct: 431 L 431 >gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 99/242 (40%), Gaps = 40/242 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+TGT+GKS+ + I + +G + Q+G + D P P Sbjct: 116 FIAITGTNGKSTTTALTAHILKAAGRDA-QMGGNIGRAVMTLD----PPEPD-------- 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 H VE SS+ +D I AG NL DH+D H T Q Y K E Sbjct: 163 ------RHYVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHYAAIK----ER 210 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNK 288 L+ AI+ DD++ ++ +R AG V+ + GY +L + A+H + Sbjct: 211 LVAGSETAIVGIDDSWCAQIAERLERAGRHVIRISKRLPLTDGYFADGSNLME--AVHGR 268 Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +EG + L G+ NAL A C+ IG++ + LE + R E Sbjct: 269 YSRVAFLEG-----IGSLRGQHNAQNALAAVAACLKIGLELGEIQSGLESFPGLAHRMEQ 323 Query: 349 VG 350 VG Sbjct: 324 VG 325 >gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG+ A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGENFDAHHYLANAVEQGSVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 P +VV +TR L A L K +A+TG+SGK++V +I Q+ Sbjct: 76 VPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQK 125 >gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis KZN 605] gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis KZN 605] Length = 438 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 132 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 190 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 191 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 242 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 243 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 302 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 303 ISATLAAARMVLEQGDGGRCMVVF 326 >gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate--D-alanyl-D-alanyl ligase [Burkholderia pseudomallei 1106b] Length = 130 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ A+GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 L V +TR L A + ++AVTG++GK++V Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTV 117 >gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2] Length = 449 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 8/108 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS+DSR I G +F+A+ G + DGH ++ + A+GA A++V + + Sbjct: 17 SAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVEREVA--------DAPL 68 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 P L+V +TR L + K + A+TG+SGK++V + I + Sbjct: 69 PQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILR 116 >gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Granulicatella elegans ATCC 700633] Length = 462 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 39/379 (10%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 + +R I VS D+R + +F+ + G + DGH +I QAI QGA+A+ + Q Sbjct: 18 YQTDYRFDMIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVF----WGRQ 72 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ------ 134 D + I V D F L L P N++ +TG+SGK++ Sbjct: 73 DQTPP-EGICAIWVDDPLEAFQELAKWYLEKIQP-NVIGITGSSGKTTTKDMTAAVLASR 130 Query: 135 -QICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 ++ + G + IG TI +D +L + + +LS V+ Sbjct: 131 YRVYKTQGNFNNDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVA------ 184 Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + T +G H++ ++ AK+ + + L K S + Sbjct: 185 ---------------AITLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLL 229 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 +++ + +VL G + + + + V+ P+ G + V Sbjct: 230 EQQLEEMQAEEHFKVLPFGEGSSSVIQAENIQLFEDHTIFDLVKPSKQSVQLPVLGAYNV 289 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEM 371 NAL A + + G+ +E +++ + R ++V G +I D Y + +++ Sbjct: 290 NNALAALQVGLECGVPLEQAIEAIQQFELTKNRTQWV-DGIHGSKILNDAYNASPIAMKS 348 Query: 372 ILKNIRTI-TSGRIIVVFG 389 ++++ ++ T GR IVV G Sbjct: 349 VIQSFTSVATKGRKIVVLG 367 >gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B str. ATCC 3626] gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B str. ATCC 3626] Length = 457 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/338 (22%), Positives = 129/338 (38%), Gaps = 46/338 (13%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPEN 116 +GA+ + S +LQD ++A I S+ P ++ + + F ++ H N Sbjct: 54 EGAKIYIGHSKDNLQDVDVVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGHKFN 113 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKA 173 + AV GT GK++ S + + + L PT + N S ++ +A Sbjct: 114 V-AVAGTHGKTTTTSMISHVALSADLD-----PTILVGGDLDIIHGNFRVGNSEYFITEA 167 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 Y Q L + G N+ DH+D+++ + + Sbjct: 168 CEY------------------KQSFLRFFPYV-GIILNIDADHLDFYKDIN-HIKDTFKQ 207 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F L+P + I ADD EV++ A C VL+ I + + + K T Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAK---CNVLTYEINNGDIQARNI-EFNEKGCATF 263 Query: 294 SV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V E K +PG V N+L A L I++ ++ L RFE+ G Sbjct: 264 DVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKG 323 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 T + + DYAH ++ L + + +I+ VF Sbjct: 324 TKND-ITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVF 360 >gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas cellulosilytica DSM 15894] gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas cellulosilytica DSM 15894] Length = 488 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 31/168 (18%) Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPS 166 R G P LAVTGT+GK++ + I +GL + +G T + A D L Sbjct: 110 RAAGGGPAPWLAVTGTNGKTTTVEMLASILSAAGLRTRAVGNVGTPLIEAALDPDLDV-- 167 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 ++VE SS L H + + AG+ NL DH+D+H T AY Sbjct: 168 ------------------LAVELSSFQL--HFAHTVAVQAGAILNLAEDHLDWHGTMAAY 207 Query: 227 FNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGY 272 K R++E + A +Y AD A EV + G R +VG+ Sbjct: 208 GADKGRIYE----RAERACVYNAADGATEHEVREADVADGAR--AVGF 249 >gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 318 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 13/115 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R I+ G +F+A+ G DGH F+ +A +GA A +VS + F P Sbjct: 28 NISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSEG-KYKSF--------P 78 Query: 92 ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143 +++V +T K L AS Y ++ ++AVTG+ GK++ + + + G+S Sbjct: 79 LIIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132 >gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinobacillus ureae ATCC 25976] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/373 (22%), Positives = 142/373 (38%), Gaps = 46/373 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S+D+R +F A+ G D H ++ A+ QG A+VV + + Sbjct: 25 VETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVEQGCVAVVVERECEI---------S 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P +VV +TR L A L K +A+TG+SGK++V +I Q+ + ++ Sbjct: 76 VPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKTTVKEMTAKILQKMTVCEDEV-- 133 Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIA 206 + +F +N L P + + G H+ A + + Q A Sbjct: 134 ---LYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIAYTTAITQPD-------A 183 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRAHNA 263 N+ H++ + + AK ++ L AI+ + + KE+ + Sbjct: 184 CLVNNVAAAHLEGFGSLEGVAQAKGEIYRG-LKAGGKAIVNQAFYYPQWQKEIGEH---- 238 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-------LP--GEFQVYN 314 + S Y G + A + V + + G F P LP G V N Sbjct: 239 --ELQSFSYTGSD---QDSYADFWAENVELDLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 AL A L +A+G D + LE+ V GR V N I Y +S++ + Sbjct: 294 ALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQHCLLIDDTYNANVDSMKSAVA 353 Query: 375 NIRTITSGRIIVV 387 ++ + RI V Sbjct: 354 VLKNYPAFRIFAV 366 >gi|222086446|ref|YP_002544980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Agrobacterium radiobacter K84] gi|221723894|gb|ACM27050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Agrobacterium radiobacter K84] Length = 470 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 67/153 (43%), Gaps = 25/153 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I Q SG + G T LT P KA Y Sbjct: 117 IAITGTNGKSTTTALIAHILQSSGRDTQLGGNIGTAI-------LTLDPP----KAERYY 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H T Q Y + K E L Sbjct: 166 V--------VECSSYQIDLAPT--LDPSAGILLNLTPDHLDRHGTMQHYADIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + AI+ DD+YS + R AG +V+ + Sbjct: 212 VAGSGVAIVGVDDSYSSLIADRIERAGAKVIRI 244 >gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter litoralis Och 149] gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter litoralis Och 149] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 31/241 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AVTG++GKS+ ++ + I + +G +T++ L P Sbjct: 122 VVAVTGSNGKSTTSALIHHILE-------HVGRPATLAGNIGRGVLDIDPP--------- 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 V +E SS+ D R + FTNL DH+D H YF AK RLF E Sbjct: 166 ---HDGEVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAE 220 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHNKQ 289 P + + D+ S A RV+ + G + K + + K Sbjct: 221 GGPDRAIVGVDEDEGLSLAGQLAEGRADDRVIRISVAQKLTGPGWQVFARKGFLSEYRKG 280 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + S+ D + LPG NA A +C ++G+ ++ L +P R + V Sbjct: 281 KQIASI---DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLV 337 Query: 350 G 350 G Sbjct: 338 G 338 >gi|255007708|ref|ZP_05279834.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Bacteroides fragilis 3_1_12] Length = 831 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%) Query: 30 INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 I+ + +DSR + +F AI + +G +IP +G VV+S + Sbjct: 24 IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 83 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 T+ L+V NT K L + + G ++ +TG++GK+ V ++ Q+ Sbjct: 84 LKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITGSNGKTIVKEWLHQL----- 138 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + P I S + ++++ P ++ S L G+ + S G + Sbjct: 139 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 188 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256 + IK G TN+G H Q+ +F+ + + E+L L K+ +IY D S V Sbjct: 189 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 242 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K A S+ + +++ +V + ++ D F P + + N+L Sbjct: 243 GKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDASIENSL 302 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 C+ + + + + E + +L V R E Sbjct: 303 NCLAACLYLMVPADQITERMARLEPVAMRLE 333 >gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis HN019] gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Bifidobacterium animalis subsp. lactis AD011] gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase [Bifidobacterium animalis subsp. lactis V9] Length = 516 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 119/537 (22%), Positives = 209/537 (38%), Gaps = 66/537 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQW---------RERKINEVSSDSRHIQAGWIFVAIVG 51 + LQ + F E + I P W E ++ D+R + G + V G Sbjct: 3 LSLQSAARELFAENLLHEIITPHMWTMNAASVENNEVPFTAITYDTRTVTPGSLLVC-KG 61 Query: 52 NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111 N F P+ + Q A + +++ + D+SA ++ P L+V + +K LS+ A Y Sbjct: 62 N------FNPKYLEQ-ANKLGMAAYVATNDYSA--YTDAPGLIVSDDKKALSILAQAYY- 111 Query: 112 KHPENILAVTGTSGKSSV---ASFVQQICQRSGLSSFQIGPTSTISSFAQ-----DNRLT 163 HPE L + G +G A + I + LS S++ + ++ LT Sbjct: 112 DHPERQLTLIGITGTKGKTTTAYYTHAII--NALSGNTTALFSSVDNCVDGMHYVESDLT 169 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQ 221 TP + + + + G+ ++ +E SS +R+ +F N+ DHI H Sbjct: 170 TPESLDAVRMMREAVNNGMKYLVMEVSSQAYKVNRVYDFHFDVAAFLNISPDHISPIEHP 229 Query: 222 TQQAYF--------NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273 + + Y NA M + E E + +DA + R + + Q Sbjct: 230 SFENYLWCKRQIIRNADMLVLGERSDHEQ---LLLEDAE----LNRVPVSTFALADSPAQ 282 Query: 274 GKFIHLKKVCAIHNKQQVTIS--VEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGID-- 328 + CA N + V+G+ L + G+F NA A + IG+D Sbjct: 283 SDIADV--TCAPTNMEHTAFDYFVDGERLGSLTLAMEGDFNYANAAAALAIAHDIGMDVS 340 Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---II 385 L L + + GR E + + VDYAH S+ +L + I Sbjct: 341 DPRALASLADVR-ISGRMEEMHDSRSNTLAIVDYAHNFASVNALLDFVEQRYGAEHPHIT 399 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIE 441 ++ G G++ +R + K A D I+T ++ +E E+I +E+ + + Sbjct: 400 LITGSAGNKAYDRREGIVKAAQDRVQKLILTAEDTDTEPIEQICSEMANNVTNEDLDVQT 459 Query: 442 KGNRIEAIRTAIEMLNKQD----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494 +R EA++ A++ D +L++ GKG E N D IIR + Sbjct: 460 ILDRAEAVKHAVDEARAADGGLSILLLIGKGDEQWIKDRNIHTPYEGDSQIIRRLFA 516 >gi|254303960|ref|ZP_04971318.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324152|gb|EDK89402.1| bifunctional histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D- glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 608 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 80/368 (21%), Positives = 156/368 (42%), Gaps = 49/368 (13%) Query: 9 KDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64 KDF E++ + + + + E +I V DSR + G +F AI +G+ ++ + Sbjct: 174 KDFSEILKREKLNDLLFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVL 229 Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 +G ++V++ ++D IL V NT + A++ K ++ +TG++ Sbjct: 230 DKGV-SLVIADNTDVKD--------ERILKVSNTIATMQDLATKYRKKLDIQVIGITGSN 280 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ V L S + T ++ +N + P + L+ + Sbjct: 281 GKTTTKDIVYS------LLSAKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFVV 327 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + SS G + RL I + TN+G HI++ +T+ F AK L E + KE+ Sbjct: 328 LEMGMSSLG-EIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELL-EFVNKEN- 384 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 + DD Y A V +G+ H + +K I ++GK++ Sbjct: 385 TFVCGDDEYL---------AKLDVNRIGFNDNNNHKIESYEFSDKGSKFI-LDGKEYK-- 432 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 L G+ + N +A L +G+ + L+++ + RF+ + G IY++ A Sbjct: 433 ISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNMRFQEIKI---GEDIYINDA 489 Query: 364 HTSNSLEM 371 + ++ M Sbjct: 490 YNASPTSM 497 >gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16] gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16] Length = 877 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 145/393 (36%), Gaps = 70/393 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ VTGT+GK+ VA V ++ Q LS G + F ++ + Sbjct: 485 VVGVTGTNGKTVVARLVARLLQ---LSGKHTGLACSDGLFLDRRQVESGDRANWESGHRI 541 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI-DYH-------------- 220 L ++ V E S + L + G TN + DH+ DY+ Sbjct: 542 LMNRAVEAAVFENDSGSILSEGLAYDRCQVGVVTNFDQPDHLGDYYVEDEDRMYNVLRTQ 601 Query: 221 -----QTQQAYFNAKMRLFEEL------------LPKESPAIIYADDAYSKEVMKRAHNA 263 +T A NA+ E+ L E PAI+ A + V R Sbjct: 602 VDVVLETGAAVLNARDERLVEMAGLCDGDVIFFGLTPELPAIVSHRAAGKRAVYLRE--- 658 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G VL+ G A+ + V ++ G+ FQV N L A Sbjct: 659 GKIVLATG--------SSETALVDVAAVPLTYAGR---------VAFQVENVLAAVAAGW 701 Query: 324 AIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 A+GI + L+ + V VPGRF N G + VD AH + +LE + + Sbjct: 702 ALGISNDLIRAGVVTFDVGQVDVPGRFTLFERN--GATVVVDDAHNAPALEALATALERF 759 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEII 433 + R +VV+G G R G D + +D P +E ++ + Sbjct: 760 PAERRMVVYGAGMQRRDEDLVRQGMALGQHFDRVFLCEDRSVKRALPDAEARALLKQGLY 819 Query: 434 HG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 G + I++G R AI TA+ L D+LV+ Sbjct: 820 EGRRVTKIIDEGTRASAIETALSQLVPGDLLVL 852 >gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister microaerophilus UPII 345-E] gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister microaerophilus UPII 345-E] Length = 449 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 22/174 (12%) Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++ E SS L+ + K A + N+ DH++ H T +AY AK R+FE + E+ Sbjct: 156 IAAEVSSFQLE--FIKNFKPKAAAILNITPDHLERHHTMEAYVQAKARIFEN-MNFENCI 212 Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ ADD Y+ E+ M H C + S+ G F+ + +++ IS +G Sbjct: 213 LLNADDKYTNELTEMANKHTNVC-LFSIQKNIDNGAFL---------DGEELVISYKGNK 262 Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + G+ NAL A+ L GI + L++ +P R EFV Sbjct: 263 INICNINELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFV 316 >gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus coahuilensis m4-4] Length = 456 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 51/381 (13%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 +N +S+F +++ ++ V D+R + AG +FV G DGH F+ + +GA Sbjct: 16 LNDVSLF----KDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKGA------ 65 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV- 133 A + + P++VV+++ L + + ++ VTG++GK++ + Sbjct: 66 GAAFWEKSAGPAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKDILF 125 Query: 134 ------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187 ++ + G + IG TI S +D+ + + Sbjct: 126 ALLSTKYRVHKTEGNYNNHIGLPLTILSLPEDSEVAV----------------------L 163 Query: 188 EASSHGLDQHR-LDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 E G + R L I L A TN+G H+ +++ AK + E L K Sbjct: 164 EMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREGISKAKFEIVEGL--KSEGLF 221 Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 +Y D + +R G + G + ++ K+ + T SV D +F Sbjct: 222 VYNGD--EPLLQERVKGYGGSKETFGRHSSNTMYPTKLAP--SGFGTTFSVNVSDEEFHL 277 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363 P+ GE V N + A + G+ + + L L + R E V T ++G I D Y Sbjct: 278 PILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLTGMRLE-VSTGAKGETIINDAYN 336 Query: 364 HTSNSLEMILKNIRTI-TSGR 383 + +S + + ++TI T+G+ Sbjct: 337 ASPSSTKAAIDLLQTISTTGK 357 >gi|160936902|ref|ZP_02084266.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC BAA-613] gi|158440092|gb|EDP17839.1| hypothetical protein CLOBOL_01791 [Clostridium bolteae ATCC BAA-613] Length = 449 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 114/281 (40%), Gaps = 43/281 (15%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + I+ +TGT GKS+V + + + +++G+ + +G + P AL Sbjct: 105 DQIIGITGTKGKSTVTTLLYHLLKQAGMDALLVG------------NIGIP-------AL 145 Query: 175 SYLSS-QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 ++ + T + E S H L+ + G N+ +H+D++ T + Y AK + Sbjct: 146 DHMEEVKPDTRIVFELSCHQLEYMT---VSPHIGILVNIHEEHLDHYGTMEKYVEAKHHI 202 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQV 291 F+ P DD V C ++ G G K++ + + Sbjct: 203 FKNQGP---------DDILICNVQCLPEEGTCPSGLIRAGMDGSG---KELDVVQEQDGT 250 Query: 292 TISVEGKDFDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + GK F L G+ ++ VA G+C +G+D + L+ +P R ++ Sbjct: 251 WVHFRGKSFCIPTDEIKLLGQHNYFDIGVAYGVCSILGMDDQVFARGLKTYEPLPHRLQY 310 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 +G R G Y D + S + ++ ++T+ +++ G Sbjct: 311 IG--EREGVKYYDDS-ISTICDTTIQALKTLKDTDTVLIGG 348 >gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 499 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 17/194 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265 TN+ DH+D H A F F L K ++ ADDA +++V +R G Sbjct: 197 TNIEPDHLD-HWGSSAAFEQAFVNFTGRLRKGGTLVLCADDAGVKRLAEQVSERGGADGP 255 Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315 RV+S G+ +H ++ + QVTI+ G+ + G+ + NA Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A G +G+D + L R + VG G RIY DY H + L+ Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374 Query: 376 IRTITS-GRIIVVF 388 R + GR++V F Sbjct: 375 ARDLAGKGRLLVCF 388 >gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia glumae BGR1] Length = 468 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + G +FVA+ G + D H F+ + A+GA A +VS A L P Sbjct: 29 VSTDSRTVGEGDLFVALKGERFDAHDFLAEVAARGASAALVSRAGVLPGL--------PQ 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L +TR L A + ++AVTG++GK++V + + Sbjct: 81 LKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVKEMIASVFA-------------- 126 Query: 153 ISSFAQDNRLTT 164 ++ QD RL+T Sbjct: 127 -AAVGQDARLST 137 >gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. CCS2] gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. CCS2] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 117/293 (39%), Gaps = 48/293 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSS---FQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++AVTG++GKS+ A+ + I +G + IG A D + Sbjct: 122 VIAVTGSNGKSTTAALIHHILVENGRPAQLAGNIGRGVLDIEPAHDGEV----------- 170 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 V +E SS+ D R + FTNL DH+D H YF AK RL Sbjct: 171 -----------VVLELSSYQTDLAR--SMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRRL 217 Query: 234 FEELLPKESPAIIYADDAYSKEVMKR-----AHNAGCRVLS---VGYQGKFIHLKK-VCA 284 F E P A+I D+A + + + + RV S + QG + +K + Sbjct: 218 FAEGGPDR--AVIGVDEAEGRYIANQLIEGPGDDRVIRVSSGQKLAGQGWTVFARKGFLS 275 Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 H K + S+ D + LPG NA A C +G+ + ++ +P Sbjct: 276 EHRKGRQVGSI---DLRVITGLPGAHNHQNACAAYAACRTLGLGPKGIEAAMQSYPGLPH 332 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397 R + V R G +V+ + +N ++ K ++ R I CGG + +G Sbjct: 333 RSQVVA--ERDGVTFVNDSKATN-VDSAAKALQAFPKVRWI----CGGLQKEG 378 >gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp. B14905] Length = 462 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 17/210 (8%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G H+D + Y AK + E + + +I ADDA +++ + + Sbjct: 185 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRA-DGTLLINADDANIEKISLQKFKG--K 241 Query: 267 VLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 ++ G Q + K AI H + + V ++ P GE QVYNAL A C Sbjct: 242 IIRFGLQDSADY--KASAIEFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAIAACS 299 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-T 380 +G+ + L + EF T G +D T+N S+E LK + T+ Sbjct: 300 EMGLSIRQAIAGLRTFKQMARHLEF--TKGIGDSTIIDDTWTNNPTSVEAALKVLDTVGK 357 Query: 381 SGRIIVVFG----CGGDRDQGKRPIMGKIA 406 ++I+V G G ++ R I K+A Sbjct: 358 EKKVILVLGDIKRLGNFEEKYHREIGSKVA 387 >gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 840 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 34/331 (10%) Query: 30 INEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS------AYSLQD 81 I+ + +DSR + +F AI + +G +IP +G VV+S + Sbjct: 33 IDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERGVRNFVVTSEDFKGLTMDSEQ 92 Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 T+ L+V NT K L + + G ++ +TG++GK+ V ++ Q+ Sbjct: 93 LKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGITGSNGKTIVKEWLHQL----- 147 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 + P I S + ++++ P ++ S L G+ + S G + Sbjct: 148 -----LSPDRVIVRSPRSYNSQIGVPLSVWQMNEESEL---GIFEAGI--SEMGEMRPLQ 197 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIYADD--AYSKEV 256 + IK G TN+G H Q+ +F+ + + E+L L K+ +IY D S V Sbjct: 198 NMIKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKDCDVVIYNGDNEMISNCV 251 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 K A S+ + +++ +V + ++ D F P + + N+L Sbjct: 252 GKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDASIENSL 311 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 C+ + + + + E + +L V R E Sbjct: 312 NCLAACLYLMVPADQITERMARLEPVAMRLE 342 >gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia denitrificans DSM 20603] Length = 509 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 32/236 (13%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V+ DSR + G +FVA+VG + DGH + A +QG A++V S +++ P Sbjct: 70 QVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQG--AVLVLSQKNIK--------GVP 119 Query: 92 ILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +VV +T++ L A +RL K ++ VTG++GK++ + Q+ G Sbjct: 120 CVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGKTTTKDLMGQMLATYG------ 173 Query: 148 GPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LI 205 + + + +N L P + A + +L ++ + AS+ G D H L I L Sbjct: 174 --NVVVPAGSLNNELGLPLTVLKADETTDFLVTE------MGASAVG-DLHYLTSIAPLD 224 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 +G H+ + + AK L LLP + A++ ADD + + AH Sbjct: 225 IAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLP-QGIAVLNADDHRVIAMKELAH 279 >gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 455 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I V+ DSR I G +FV I G + DGH F+ AI GA A + + + Sbjct: 21 ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAGH--------- 70 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +L V +T K + A K ++ +TG++GK++ V + + Sbjct: 71 -PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMVAAVLAK--- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200 F + T ++F +N + P I K ++ + V + ++ + H L Q Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +I T +G HI++ ++ +AKM + + L +E IY D + +RA Sbjct: 179 DVAVI----TMIGEAHIEFLGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230 Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G+ IH + +H+ + G D +F P+ G V NA+ A Sbjct: 231 AKLSQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287 >gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 43063] gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 43063] Length = 499 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 17/194 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265 TN+ DH+D H A F F L K ++ ADDA +++V +R G Sbjct: 197 TNIEPDHLD-HWGSSAAFEQAFVDFTGRLRKGGALVLCADDAGVKRLAEQVSERGGADGP 255 Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315 RV+S G+ +H ++ + QVTI+ G+ + G+ + NA Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A G +G+D + L R + VG G RIY DY H + L+ Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374 Query: 376 IRTITS-GRIIVVF 388 R + GR++V F Sbjct: 375 ARDLAGKGRLLVCF 388 >gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM 12333] gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM 12333] Length = 473 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 81/342 (23%), Positives = 136/342 (39%), Gaps = 48/342 (14%) Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAV 120 A +GA+ +VVSSA IR + P LV L S + + ++AV Sbjct: 56 AAVEGADVVVVSSA---------IRGDNPELVRARELGVEVLHRSAALARIANERELVAV 106 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK++ ++ + +GL PT+ I + +D S + Sbjct: 107 AGTHGKTTTSAMLAVALTEAGLD-----PTAAIGAVVRD--------------WSSGARV 147 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G V V A + D L +A TN+ DH+D++ A A R F + Sbjct: 148 GAGRVFV-AEADESDSSFLAYAPRVA-VVTNIEADHLDHYADTDALVEA-FREFARRIVS 204 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLK----KVCAIHNKQQV 291 + ADD S E+ + A G RV + G G+ + H++ ++ A + +V Sbjct: 205 GGLLVACADDPGSLELARWATAQGIRVRTYGVGGEPLDPASDHVRITDLELDATSARAEV 264 Query: 292 T-ISVEG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T ++ +G PG V +A+ + +G D+ + L + RFE Sbjct: 265 TLVTADGLGPGPVRLRLAAPGRHTVLDAVAGWAAGLELGADAEQLAHGLARFTGTARRFE 324 Query: 348 FVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVF 388 G + G R+ DYAH + + + GR++V+F Sbjct: 325 TRG-EAGGVRVVDDYAHNPTKVRAALEAARLAVGDGRVLVLF 365 >gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis T17] gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis T17] gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis T17] Length = 482 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY E ++P + ++ DD + +RA G RVL Sbjct: 176 ITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGA-LVVCTDDPGGAALAQRATELGIRVL 234 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 235 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 286 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 287 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 346 Query: 369 LEMILKNIRTIT----SGRIIVVF 388 + L R + GR +VVF Sbjct: 347 ISATLAAARMVLEQGDGGRCMVVF 370 >gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Prochlorococcus marinus str. NATL2A] gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus marinus str. NATL2A] Length = 469 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 34/240 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPI-YLAKALS 175 + +TGT+GK++V + + I + + L++ G +S A +N + +L LS Sbjct: 121 VGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALENMKNNDQELDWLVLELS 180 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +G V+ G +T DH++ H ++YF K L E Sbjct: 181 SFQIEGSPKVAP-----------------TIGIWTTFTPDHLERHNDMESYFKIKRSLLE 223 Query: 236 ELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQV 291 K S I +DD Y ++ + + G S+ Q KF +K +K+Q+ Sbjct: 224 ----KSSIRIYNSDDQYLSSKRKELPKGIWVGTNQQSLYSQYQKFWIDQKGYIFEDKKQL 279 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 S + +PG+ + N L+A IG+D + + + ++ +P R E++G Sbjct: 280 FHSS-------ILNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKSIPHRLEYLGN 332 >gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 465 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 24/289 (8%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRL--FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 N+ DH+DY + N K F L+PK+ + DD+ + V+K N ++ Sbjct: 184 NVDSDHLDYFKNID---NIKQSFTQFANLVPKDGFVVACGDDSNTMSVLK---NVDRNII 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNALVAAGLCIAI 325 + G K K + V +F + G+ +YNAL +C + Sbjct: 238 TFGIDSNCTWNAKNIKFDEKGFPSFDVYYNGVFIQNFELSIVGKHNIYNALATLAVCHLL 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 G+D ++K RFEF GT G I DYAH ++ L + RII Sbjct: 298 GVDIKSTPSIIKKFKGTHRRFEFKGT-LDGAIIIDDYAHHPTEIKATLSSALNYPHNRII 356 Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444 +F + D ADI I+TD R +D + A+ + + ++GN Sbjct: 357 CIFQPHTYSRTYSLLQDFATSFDNADITIITDIYAAREKDTGIVHAKDLAKL--IRDRGN 414 Query: 445 RIEAIRTAIEMLN-------KQDVLVVAGKG--HETVHIVTNGEKKMSV 484 I+ ++++ D+++ G G +E +++ N KK ++ Sbjct: 415 ETYYIKEFTDIVDYLRSIIKSGDLVITIGAGDVYEVGNMLLNFNKKAAI 463 >gi|83949551|ref|ZP_00958284.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens ISM] gi|83837450|gb|EAP76746.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens ISM] Length = 470 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 12/185 (6%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ +H+++ T++ + F +P A+ DDA + ++ + + RV++ Sbjct: 185 TNIDPEHMEHWGTEE-NLHRGFYEFVSNIPFYGLAVCCTDDADVQTLVGKVTDR--RVVT 241 Query: 270 VGYQGKFIHLKKVCAIHNKQQ----VTISVEGKDF---DFLFPLPGEFQVYNALVAAGLC 322 G+ + ++ + + Q + + EG D D + P+PG+ V NAL A + Sbjct: 242 YGFNAQ-ADVRGMNLRYEAGQAHFDIALRGEGDDKVIKDCVLPMPGDHNVSNALSAVAVA 300 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+ SA + E L V RF VG G I DY H + +LK R T G Sbjct: 301 RHLGMRSAEIREALANFGGVNRRFTRVG-EVDGVVIIDDYGHHPTEIAAVLKAARQATEG 359 Query: 383 RIIVV 387 R+I V Sbjct: 360 RVIAV 364 >gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 453 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 28/200 (14%) Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 SS T +E SS L+ + K + G N+ DH++ H Y AKMR+FE Sbjct: 155 SSTDDTIFVIEISSFQLETIKY--FKPMVGCILNITPDHLNRHMNMDNYIRAKMRIFEN- 211 Query: 238 LPKESPAIIYADDAYSKE--------VMKRAHNAGCRVLSVGYQGKFIH---LKKVCAIH 286 + +E +++ D++ +++ V+ + N SV G FI+ L KV + Sbjct: 212 IDQEGYSVLNMDNSITRDLIGCAKGTVITFSKNESDTQNSVFVDGDFIYRNFLGKVEKVM 271 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 K + +PGE + N L A G + I +++ + L++ V R Sbjct: 272 RKDDIF-------------MPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVEHRI 318 Query: 347 EFVGTNSRGGRIYVDYAHTS 366 EFV G R Y D T+ Sbjct: 319 EFV-REINGVRFYNDSKGTN 337 >gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 15998] gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces roseosporus NRRL 11379] gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus NRRL 15998] Length = 473 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 38/241 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F A G + DGH + AQ A ++ + + P +VV Sbjct: 34 DSREVAPGSLFAAFAGERVDGHDY-----AQRAVEAGAAAVLAARPV------GVPAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ L A + +++A+TG++GK+S + Q+ QR G + + G S Sbjct: 83 DDVVGALGALARAAVERLGTSVVALTGSAGKTSTKDLIAQLLQRHGPTVWTPG------S 136 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVT-HVSVEASSHGLDQHR----LDGIKLIAGSFT 210 F +N + P L+ LS+ T H+ +E + G+ R L ++ G Sbjct: 137 F--NNEIGLP--------LTALSATAETEHLVLEMGARGIGHIRYLTELTPPRI--GLVL 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G H+ +++A AK + E LP++ A++ ADD + + R RVL Sbjct: 185 NVGSAHLGEFGSREAIAQAKGEMVEG-LPEDGCAVLNADDPLVRAMASRTK---ARVLLF 240 Query: 271 G 271 G Sbjct: 241 G 241 >gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM 43043] gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM 43043] Length = 488 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 139/372 (37%), Gaps = 73/372 (19%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQR 139 S++IR + L R L S+ G H + +AV G +GK++ S + Q Sbjct: 93 MSSSIRDDNVELRAARARGAKVLHRSQGLGSLMHGQRPVAVAGANGKTTTTSLLTVALQG 152 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR- 198 GL SFA V E + HG + HR Sbjct: 153 CGLDP----------SFA---------------------------VGGELARHGTNAHRG 175 Query: 199 LDGIKLIA-----GSF----------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 D I ++ GSF TN+ DH+D++ + F +E L+ P Sbjct: 176 ADDIFVVEADESDGSFIVYRPEVAIVTNVQPDHLDFYGS----FAVVQAAYEALVATIQP 231 Query: 244 A---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKD 299 + ADDA S+ + +RA G RVL+ G++ + L T+ EG Sbjct: 232 GGLLVTCADDAGSRALAERATARGTRVLTYGFRPDADVALGDYRQDGLTSGATVLDEGVR 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 +PG NA+ A + +G VL L RFE G + G + Sbjct: 292 RLLTLGIPGRHNALNAVAAYTAAVHGLGQQPDRVLAGLASFTGTRRRFEPKG-EAAGVVV 350 Query: 359 YVDYAHTSNSLEMILKNIR--TITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA 413 DYAH + + +++ + GR+IVVF RD +G+ L AD+ Sbjct: 351 VDDYAHNAGKVAAVVETASQLVVRPGRLIVVFQPHLYSRTRDFAVE--LGR-GLAPADVV 407 Query: 414 IVTDDNPRSEDP 425 IV D EDP Sbjct: 408 IVMDVYAAREDP 419 >gi|281356446|ref|ZP_06242938.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC BAA-548] gi|281317138|gb|EFB01160.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC BAA-548] Length = 511 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 38/85 (44%) Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 P PG NAL L IG D A +E LE+ V R ++ G + G +Y DYA Sbjct: 318 LPQPGFHMAMNALAIDALLEWIGFDPAETIEALERFDGVWRRNDYAGLTASGATVYDDYA 377 Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388 H + + +R + G I VF Sbjct: 378 HNPEKIVSCFRAMREMGDGNIYAVF 402 >gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kytococcus sedentarius DSM 20547] Length = 475 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/379 (22%), Positives = 156/379 (41%), Gaps = 68/379 (17%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR +AG ++VA G DGH F+ A+ GA A SL + T + Sbjct: 29 VVTDSRLAEAGSLYVARRGESADGHDFVEAALGNGAVA-------SLAEREV---PGTYV 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSG-----LSSF- 145 LV D F L A + + P+ ++AVTG+SGK+S + Q+ +G + S+ Sbjct: 79 LVPDVQEAFARL-ARWMVDELPDLQVVAVTGSSGKTSTKDLLGQVLAEAGPTIAPIESYN 137 Query: 146 -QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++G T+ P+ YL ++ + + G H++ + Sbjct: 138 SEVGVPLTVCRI-------EPTTEYL---VAEMGASGPGHIAY--------------LTA 173 Query: 205 IA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 IA G N+G H+ +QQ + K + E LP + A++ ADD + +R Sbjct: 174 IAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEG-LPADGLAVLNADDPLVAAMSERV 232 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAI--------HNKQQVTISVEGKDFDFLFPLPGEFQV 312 + + S+ + + + V A + + T++V G+ P+ +V Sbjct: 233 TSGEVQYFSLDAD-RAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPV--HLRV 289 Query: 313 YNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 A +AA +G+D+A + L + + R+ T G + ++ + + Sbjct: 290 RGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAI-SRWRMEVTERPDGVMVINDGYNA 348 Query: 367 N--SLEMILKNIRTITSGR 383 N S+ L +R + GR Sbjct: 349 NPESMRAALTALRDMAHGR 367 >gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC 334] gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei ATCC 334] Length = 462 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FV + G + DGH FIP A GA A V++ + T + T ++V Sbjct: 32 DSRKLKPGMLFVPLRGER-DGHEFIPAAATAGAVATFVAADH----LPVTTKLIT-LVVP 85 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D + L L K ++A+TG++GK++ I + Q T + Sbjct: 86 DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210 + +N + P ++ LS + T V V G+D+ +L + +A T Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G HI++ +T+ +AKM + + L K+ I+ D + +RA + Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243 Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + F H + N + T+ D F P+ GE+ V NAL A + + Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385 ++ + L V R +++ G +I D Y +++ ++ + T +GR I Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359 Query: 386 VVFG 389 V G Sbjct: 360 AVLG 363 >gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341] Length = 453 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/340 (19%), Positives = 143/340 (42%), Gaps = 36/340 (10%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 KD +++N + E I ++ DSR ++ G +F+ +G DGH +I A +GA Sbjct: 6 KDLEKILNAKKVNITSDTE--ITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESAFEKGA 63 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + SL+D S+ I+ V+++ + + A +A+TG++GK++ Sbjct: 64 AA-----SLSLKD---DFVSSNNIIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKTT 115 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + +++ T +F +N L P I A S + + +E Sbjct: 116 TKDIITSVLS----TKYKVHKTQ--GNF--NNELGVPLTILAAPEDSEI-------LVLE 160 Query: 189 ASSHGLDQHRLDGI-KLIAGSF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + G Q LD + KL+ ++ TN+G HI++ ++++ AK + + K+ Sbjct: 161 MGADGFGQ--LDFLSKLVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNG-MKKDGYF 217 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304 + D+ K ++ + Y + + + ++ + D + Sbjct: 218 VYNGDEVLLKSLVDSSDFNTTSCGENNYNDIILENYTIT----RDRIDFKLNISDEQYFT 273 Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 L G+ ++N + A + IG+ + + + +E + G Sbjct: 274 KLKGKHNLFNIMFATAIASKIGLTNEEIRKAIENTVEITG 313 >gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nitrobacter hamburgensis X14] Length = 478 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 49/301 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR I G ++ AI G+ DGH F+ A+ GA V+ +A F+A + Sbjct: 27 ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAALKAGAALAVIEAAQR-DKFAA----D 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-----LSS 144 P+L+VD+ L A + ++AVTG+ GK+S ++ + G ++S Sbjct: 82 APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVLGAQGKTHASVAS 141 Query: 145 F--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 F G T++ +D R + A +S L H+++ Sbjct: 142 FNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLVKMVRPHIAI-------------- 187 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T + H+++ +A +AK +FE + PK + ++ D+A + +RA Sbjct: 188 -------ITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGA-VVLNRDNAQFARLQRRAK 239 Query: 262 NAG-CRVLSVGYQGKF------IHLKKVC-AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 G +++S G K + L C A+H + + G + + +PG Sbjct: 240 KLGIAKIVSFGADEKADARLLDVALHPACSAVHAR------ILGHELTYKLAMPGRHMAM 293 Query: 314 N 314 N Sbjct: 294 N 294 >gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 113/309 (36%), Gaps = 85/309 (27%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPI 168 K EN +A+ GT GK++ S + + ++ + PTS I ++ N S I Sbjct: 99 KEYENSIAIAGTHGKTTTTSMITLVFDKA-----EKNPTSLIGGMFKNIGGNVEIGNSDI 153 Query: 169 YLAKALSYLSS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 ++++A Y+ S Q V+V TN+ DH+DY + Sbjct: 154 FISEACEYVDSFLQFYPKVAV---------------------ITNIEEDHLDYFEDLSQI 192 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 N+ ++ F + + I DD ++ +K V G+ Sbjct: 193 KNSFLK-FANQVKEGGFVIANGDDENVRDTLKDCKR---NVYYYGFN------------- 235 Query: 287 NKQQVTISVEGKDF--------DFLFP-------------------LPGEFQVYNALVAA 319 EG DF DF +P + G+ VYNA A Sbjct: 236 ---------EGNDFIIDNLEFDDFGYPCFDIFYANDGVLIDNYKLNVFGKHNVYNATSAI 286 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + I+ + +EK V RFE++G G R++ DYAH ++ L I+++ Sbjct: 287 VSACMLDIEKEDIKNAIEKFTGVGRRFEYIGEKD-GVRVFDDYAHHPTEIKSTLDAIKSL 345 Query: 380 TSGRIIVVF 388 R +F Sbjct: 346 KKNRFFSIF 354 >gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp. ACTE] gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp. ACTE] Length = 477 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 26/166 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +GL + +G Sbjct: 108 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 154 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L + ++VE SS+ L H ++ + + NL DH+D+H + Sbjct: 155 ---VSLLDAV--LGEETYDVLAVELSSYQL--HWAPSLRADSAAVLNLAPDHLDWHGSMD 207 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268 AY K R++E A +Y A D ++++++ A GCR + Sbjct: 208 AYAADKGRVYE----GNRVACVYNAQDPATEDLVREADVEEGCRAI 249 >gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hyphomicrobium denitrificans ATCC 51888] Length = 467 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/301 (21%), Positives = 132/301 (43%), Gaps = 24/301 (7%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F EL + P ++ + +S D+R +QAG +FVA+ ++ DGH F+ A GA A Sbjct: 7 FSELSAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPAFKAGAAA 65 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSS 128 +VS Y + + + V +T K L A+R ++AVTG++GK+ Sbjct: 66 ALVSEGYVRR------AEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAGKTG 119 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 ++ G++ S + +N P+ LA+ + + GV + + Sbjct: 120 TKEMLRACLSHLGVTH--------ASEKSYNNHWGV--PLTLAR-MPRETRFGVFEIGMN 168 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248 + ++ ++ A T + H+++ + +A +AK +FE LLP + AII Sbjct: 169 HAGEIRPLTKM--VRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGT-AIIKF 225 Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D+ ++ + A G + ++ G+ G + + H+ +++ + + +P Sbjct: 226 DNPHAARLKAIAERLGAKAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMP 285 Query: 308 G 308 G Sbjct: 286 G 286 >gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio furnissii NCTC 11218] Length = 453 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 17/142 (11%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I VS+D+R I +FVA+VG + D H F QA+A GA+A++V A + Sbjct: 21 DTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 N P LVV NT+ L ++ + +A+TG+ GK++V V I G F Sbjct: 74 --NVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVLFT 131 Query: 147 IG--------PTSTISSFAQDN 160 G P + + S QD+ Sbjct: 132 AGNFNNDIGVPLTLLRSTPQDD 153 >gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Weissella paramesenteroides ATCC 33313] Length = 455 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/379 (20%), Positives = 152/379 (40%), Gaps = 61/379 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + + DSR ++ G +F+ +V + DGH ++ A + GA + + + + S+ Sbjct: 24 VTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNGATVALWQADHQ------NVPSH 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS------ 143 P+++V +T AS + ++AV+G++GK++ F+ I Q S + Sbjct: 77 LPVIIVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKDFIAAIGQTSYKTVKTPEN 136 Query: 144 -SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG TI S D L L + +T +S +L + Sbjct: 137 FNNEIGVPQTILSMPTDTEL-------LVIEIGMDHPGDLTFLS-----------KL--V 176 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 K T +G HI++ +T++ + KM + L KE +++ D +++R Sbjct: 177 KPDIALLTMIGEAHIEFFKTRERIADGKMEIINGL--KEHGHLVFNGD--EPLLLER--- 229 Query: 263 AGCRVLSVGYQGKFIH----LKKVCAIHNKQ------QVTISVEGKDFDFLFPLPGEFQV 312 VG +H L + + Q + F P+ G + V Sbjct: 230 -------VGQHAHLLHDSFGLNSTNDLFASEIDMTPVQASFKTNQSAQRFTIPMTGRYNV 282 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY--AHTSNSLE 370 NAL A + + I + + L + + R E++ GG+I D ++ + + E Sbjct: 283 TNALSAITVGHLLHISDKKIAQALAEAPITENRTEWLD-GQFGGKILSDVYNSNPTAAKE 341 Query: 371 MILKNIRTITSGRIIVVFG 389 ++ T T G+ I V G Sbjct: 342 VLHFFADTPTQGKRIAVLG 360 >gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 509 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 13/115 (11%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +S+D+R I+ G +F+A G DGH F+ +A +GA A +VS + F P Sbjct: 28 NISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKGAIAAIVSEG-KYKSF--------P 78 Query: 92 ILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQRSGLS 143 +++V +T K L AS Y ++ ++AVTG+ GK++ + + + G+S Sbjct: 79 LIIVQDTLKALHDMAS-YYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVS 132 >gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379] Length = 406 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 24/289 (8%) Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRL 162 L R Y K +AVTG+ GK+S F+ +I S S +IG + + ++ R Sbjct: 21 LICRRFYDK--TTAIAVTGSCGKTSTTHFLGKIL--SDRDSCRIGILFNCRKAIIKNLRR 76 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222 S ++ + V VE + G RL ++ G T++G+DH +T Sbjct: 77 VNSSHRFV-----------LQEVGVEGT--GCMNERLPLLRPRIGIVTSVGQDHYCNFRT 123 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKK 281 +A K +L E LP+ A++ ADD + V+ A + RVL+ G ++ + Sbjct: 124 LEATAFEKGKLI-EFLPESGVAVLNADDPH---VLAMARRSKARVLTYGLWEEADVRGSD 179 Query: 282 V-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 + CA + + ++ +G+ L G + L A +A GID L + Sbjct: 180 IRCAWPERLSLAVTYQGESVRIETGLFGSLLASSILAAVCGALAAGIDLKQCAASLHAVE 239 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 P R T+ R I ++ +L+ + + R VVFG Sbjct: 240 SFPRRMTIHATSQRAWYICDTAKAPYWTVAKVLEPMTDAAAPRKTVVFG 288 >gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32] gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32] Length = 486 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 46/285 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +AV GT GK++ + V QI +GL +F G + S + RL + S I +A+A Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231 S+L Q + + + +D + G F L + ID+ Y A M Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233 Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + EL+P+ S +I +S++ R N + G QGKF Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275 Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ EGK + D +PG NA A + I +L+ + RF+ Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332 Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 +G G + + DY H +++ ++ R+ T R++++F Sbjct: 333 HLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIF 377 >gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Stigmatella aurantiaca DW4/3-1] Length = 467 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 89/372 (23%), Positives = 146/372 (39%), Gaps = 47/372 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R + G +FVA+ G + D H F+ QA A GA VV + +L I + P+ Sbjct: 30 ISTDTRSLPPGCLFVALQGERFDAHDFLAQAHAGGAGGAVVRAGQALP----AIPGDFPL 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +T L A + + AV G++GK++ V I G Sbjct: 86 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRG----------- 134 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLIAGSFTN 211 + + L + L L L V V + + RL I+ AG T Sbjct: 135 -PALKTEGNLNNEVGVPL--TLLRLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITV 191 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----------SKEVMKRAH 261 + +H++ + + A+ LF EL P E+ A++ DD + RA Sbjct: 192 VQPEHLEGLGSLEGVAEAEGELFRELSP-EAVAVVNLDDPLIPAQAAKGRGKRLTFGRAE 250 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 +A R+ V +G+ +T+ +G+D+ GE NA A L Sbjct: 251 SADVRLSQVETRGR-----------EGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFAL 299 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI 379 +A+G + LE R V + G VD + +N S++ L +RT+ Sbjct: 300 ALALGYSPEECVRGLESARPYARRLNVV--DGLHGVTVVDDCYNANPASMDAALDTLRTL 357 Query: 380 TS--GRIIVVFG 389 + GR + V G Sbjct: 358 VTAGGRAVAVLG 369 >gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 462 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FV + G + DGH FIP A GA A V++ + T + T ++V Sbjct: 32 DSRKLKPGMLFVPLRGER-DGHEFIPVAATAGAVATFVAADH----LPVTTKLIT-LVVP 85 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D + L L K ++A+TG++GK++ I + Q T + Sbjct: 86 DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210 + +N + P ++ LS + T V V G+D+ +L + +A T Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G HI++ +T+ +AKM + + L K+ I+ D + +RA + Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243 Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + F H + N + T+ D F P+ GE+ V NAL A + + Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385 ++ + L V R +++ G +I D Y +++ ++ + T +GR I Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359 Query: 386 VVFG 389 V G Sbjct: 360 AVLG 363 >gi|117928219|ref|YP_872770.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus 11B] gi|189028966|sp|A0LTM4|MURC_ACIC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|117648682|gb|ABK52784.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus 11B] Length = 477 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/319 (24%), Positives = 123/319 (38%), Gaps = 44/319 (13%) Query: 83 SATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 S + TP L V R L AS + G+ +AV GT GK++ S V + Sbjct: 84 STAVPPTTPELAVARERGLPVLPRAAALASVMAGR---RGVAVAGTHGKTTTTSMVVRAL 140 Query: 138 QRSGL-SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 QR G SF IG S A D + I++A+A D Sbjct: 141 QRCGADPSFAIGADLGEPGSNAHDGTGS----IFVAEADES------------------D 178 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 + L + A TN+ DH++ H A +A F +P + DD ++E Sbjct: 179 ESFLL-LPFHAAVVTNVEADHLN-HYADLAAIHAAFDRFVAKVPDGGFLVACTDDPGAEE 236 Query: 256 VMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEF 310 + RA G V G + + L+ A + ++++G L +PG Sbjct: 237 IASRAARRGTVVRRYGTSPRADVRLVDLRLEVA---GSRFAVAMDGTVLGELQLRVPGAH 293 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370 NA A + + +G + V E L RF+ G + G R++ DYAH + Sbjct: 294 NALNATAAVAVTVGLGFPFSEVAEGLADFTGARRRFQPQGEVA-GIRVFDDYAHHPTEIA 352 Query: 371 MILKNIRTIT-SGRIIVVF 388 L+ R + GR++V F Sbjct: 353 ATLRAARVVADGGRLVVAF 371 >gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [polymorphum gilvum SL003B-26A1] gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Polymorphum gilvum SL003B-26A1] Length = 476 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 152/378 (40%), Gaps = 47/378 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I +S DSR +Q G FVAI G + DGH F+ A + A +D + ++ Sbjct: 27 IGGISIDSRTLQPGDAFVAIEGERFDGHDFV-----AAALEAGAALALVARDRLERLPAD 81 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VVD+ + L A + I+AVTG+ GK+ ++ +RSG + Sbjct: 82 GRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGKTGTKEALRLALERSGRTH----- 136 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA--- 206 ++++SF +N P+ LA+ + + GV + + H + L+A Sbjct: 137 -ASVASF--NNHWGV--PLTLAR-MPADTDYGVFEIGM--------NHAGEITPLVALVR 182 Query: 207 ---GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 T + H+++ + + AK +F L P AI+ D+A + A NA Sbjct: 183 PHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPG-GVAILNRDNAQFDLLTFLARNA 241 Query: 264 G-CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G + + G + + A+ + V G+D + PG V N+L Sbjct: 242 GVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLLA 301 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEM----- 371 + +G D AL L L GR G +R G +D ++ +N M Sbjct: 302 VVELGADLALAGIALGDLSAPKGR----GAQTRLRLPAGVATLIDESYNANPASMRAALQ 357 Query: 372 ILKNIRTITSGRIIVVFG 389 +L + + GR I V G Sbjct: 358 VLGDAQVSPPGRRIAVLG 375 >gi|262066314|ref|ZP_06025926.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum ATCC 33693] gi|291380009|gb|EFE87527.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium periodonticum ATCC 33693] Length = 463 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265 TN+ DH+D H + N K E +L + +II D SK +M K Sbjct: 173 TNIDADHLDVHGNLE---NIKKSFIEFILHTQKESIICMD---SKNLMDAISKLPEEKSV 226 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ + I K + ++ K +V ++ E K +F +PGE + N+L L + Sbjct: 227 TTYSIKDENANICAKNIRIVNRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374 G++ + E L + R++ + G ++ RI DYAH ++ LK Sbjct: 286 KFGLNKEEIQEALNQFKGSKRRYDVLYDQELENGYGNKTKKVRIVDDYAHHPTEIKATLK 345 Query: 375 NIRTITSGRIIVVF 388 I+++ + R++ +F Sbjct: 346 AIKSVDNSRLVAIF 359 >gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide synthase [Photobacterium profundum 3TCK] Length = 468 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+D+R + A +F+A+ G + D H F A+ GA A++VS ++ Sbjct: 24 VANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMDNGAAALLVSRHLPVE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVV +T + L L + L H +A+TG+ GK++V +I + G Sbjct: 75 LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGSCGKTTVKEMAAEILSQKG 130 >gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. GAI101] gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp. GAI101] Length = 464 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 42/297 (14%) Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 F FA++ + + I+AVTG++GKS+ ++ + I + +G PT + + Sbjct: 104 FFQSFATQDWDGFDQMPKIIAVTGSNGKSTTSALIHHILKHAGR------PTQLAGNIGR 157 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 P+ + + V +E SS+ D R + FTNL DH+D Sbjct: 158 GVLDIEPA----------IDGEVVV---LELSSYQTDLAR--NLTPDIAVFTNLSPDHLD 202 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSV------ 270 H YF AK RLF E P AII D+A + + + RV+ V Sbjct: 203 RHAGMGGYFAAKRRLFAEGGPDR--AIIGVDEAEGRYLAGQLSEGAADDRVIRVSVDRKL 260 Query: 271 -GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 G + K + + K + S+ D + LPG NA A C ++G Sbjct: 261 SGPGWQVFARKGFLSEYRKGKQVGSI---DLRGVTGLPGAHNHQNACAAYAACRSLGFAP 317 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS--NSLEMI--LKNIRTITSG 382 ++ +P R + +G RG R D T+ ++++ + +NIR I G Sbjct: 318 KVIEAAFASFGGLPHRSQTIG-ELRGIRFVNDSKATNVDSAVKALAAFRNIRWICGG 373 >gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II '5-way CG'] Length = 464 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 78/322 (24%), Positives = 125/322 (38%), Gaps = 51/322 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKA 173 +AV G+ GK++ S + + GL PT + F + R+ + I++A+A Sbjct: 109 VAVAGSHGKTTTTSMIAHVLAHGGLD-----PTCVVGGRVPGFGGNARVGKKN-IFVAEA 162 Query: 174 ----LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229 S+L HV+V TN+ ++H+DY+Q+ F+ Sbjct: 163 DESDGSFLKIS--PHVAV---------------------VTNIDQEHLDYYQS----FDQ 195 Query: 230 KMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 FE L P E A++ DD ++ + NA + V A Sbjct: 196 LKAAFERFLASVPPEGLAVVCLDDPELSNILP-SLNAPHWTYGFNPSADVVG-SDVSAEG 253 Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 ++ + GKD F +PG V NAL + G+++ V E LE+ V R Sbjct: 254 LSTSFSVRLRGKDIGSFSLNIPGVHNVLNALATIAVGHHFGLEAECVREALERFRGVGRR 313 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405 F VG G RI DY H + + L R R +VV R R ++ + Sbjct: 314 FTQVGEEG-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRLVV-AFQPHRFSRTRDLLSRF 371 Query: 406 --ALDLADIAIVTDDNPRSEDP 425 A LAD+ ++ + E P Sbjct: 372 ASAFQLADVLVLGEIYGAGESP 393 >gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Serratia proteamaculans 568] gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia proteamaculans 568] Length = 453 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV++D+R + G +FVA+ G + D H F V++ S + Sbjct: 23 QIVEVTTDTRQVTTGCLFVALKGERFDAHDF---------AVDAVAAGAGALLVSKRLLV 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVV +TR L A+ + + P ++A+TG+SGK+SV I + G Sbjct: 74 EVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECG 126 >gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta sp. Buddy] Length = 461 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 19/209 (9%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 ++I +V DSR G +F A+ G K DG ++ +GA A+VV + + + A R Sbjct: 31 KRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVVPKSRAAE---ALAR 87 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P+L ++ L A + P + +TG+ GKS+ + +I + L S Sbjct: 88 VRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTTKEALARIT--AVLGSTA 145 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-IKLI 205 P + S + P I+ L S GV + ++ H + R+ G +K Sbjct: 146 KTPGNLNSEYG------LPLSIF---GLDETSRYGVFEMGID---HVGEMDRMVGMLKPS 193 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 TN+G H++ +Q+ K R+F Sbjct: 194 IALLTNVGISHLEKMGSQEIIAEQKARIF 222 >gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 613 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/369 (21%), Positives = 159/369 (43%), Gaps = 51/369 (13%) Query: 9 KDFPELI-----NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63 KDF E++ N+L IF ++ +I V DSR + G +F AI +G+ ++ Sbjct: 178 KDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDV 232 Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 + +GA ++V++ ++D I+ V +T + A + K ++ +TG+ Sbjct: 233 LDKGA-SLVIADNIDVKD--------ERIIKVSDTIATMQDLAIKYRKKLDIQVVGITGS 283 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 +GK++ V L S + T ++ +N + P + L+ + Sbjct: 284 NGKTTTKDIVYS------LLSVKAKTLKTEGNY--NNHIGLPYTL-----LNVTDEEKFV 330 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSF-TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + + SS G + RL I + TN+G HI++ +T+ F AK L E ++ + + Sbjct: 331 VLEMGMSSLG-EIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVIKENT 389 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 + DD Y A V +G+ + + +K + ++GK+++ Sbjct: 390 --FVCGDDEYL---------AKLDVNKIGFNNSNTYKIESYKFSDKGSKFV-LDGKEYE- 436 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362 L G+ + N +A L IG+ + L+++ + RF+ + G IY++ Sbjct: 437 -MSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKI---GEDIYIND 492 Query: 363 AHTSNSLEM 371 A+ ++ M Sbjct: 493 AYNASPTSM 501 >gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis DSM 43247] Length = 436 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 39/293 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N + DSR + G +FV IV + DGH FI A+ GA A + S+ A I Sbjct: 20 VNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTSAGAVDGAAGAAI--- 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 +VD+T + L+ + + P ++ VTG+ GK+S + +GL + Sbjct: 76 ----IVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL------AGLLATTFRT 125 Query: 150 TSTISSFAQDNRLTTP-----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 ++ SF +N L P +P + + ++G+ H+ + S K Sbjct: 126 AASEKSF--NNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIG----------KP 173 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G T + H++ +A AK L E LP + A++ AD K V A Sbjct: 174 TVGIITRVEGVHLELFGNIEAVARAKGELVEA-LPDDGIAVLNAD---HKHVAAMADRTS 229 Query: 265 CRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYN 314 RV++ G + +H V I ++ + + + + D GE QV N Sbjct: 230 ARVITFGLTPESDVHASAVV-IDDELRASFRLHSPWGETDIRLAARGEHQVPN 281 >gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus casei BL23] gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str. Zhang] gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W] gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II] Length = 462 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 153/364 (42%), Gaps = 42/364 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +FV + G + DGH FIP A GA A V++ + T + T ++V Sbjct: 32 DSRKLKPGMLFVPLRGER-DGHEFIPAAATAGAVATFVAADH----LPVTTKLIT-LVVP 85 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D + L L K ++A+TG++GK++ I + Q T + Sbjct: 86 DPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTTKDMTAAIL------ATQYHVVKTPDN 139 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIA----GSFT 210 + +N + P ++ LS + T V V G+D+ +L + +A T Sbjct: 140 Y--NNEIGVP--------MTILSMEPNTEVLV--LEMGMDRPGQLHALSTLAEPDVAVIT 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G HI++ +T+ +AKM + + L K+ I+ D + +RA + Sbjct: 188 MIGEAHIEFFKTRDKIADAKMEITDGL--KDDGTFIFNGD--EPLLQERAKKITQERETF 243 Query: 271 GYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 G + F H + N + T+ D F P+ GE+ V NAL A + + Sbjct: 244 GLHPENTIFAH--SISGHRNHTEFTVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHV 300 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRII 385 ++ + L V R +++ G +I D Y +++ ++ + T +GR I Sbjct: 301 KPEIMQKALAHFQVTANRTQWL-IGDVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHI 359 Query: 386 VVFG 389 V G Sbjct: 360 AVLG 363 >gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans C9-1] gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans C9-1] Length = 438 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 42/238 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G +Q+G I ALS Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------LPALSL 147 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 L S +V +E SS L+ +K A + N+ DH+D Y Q Y AK+R++E Sbjct: 148 LQSPAQLYV-LELSSFQLETTH--SLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYE 204 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 I+ ADDA + V A R +S G HL NKQQ +I + Sbjct: 205 ----NAQICIVNADDALTMPV----RGADKRCVSFGVDFGDYHL-------NKQQGSIWL 249 Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 K L + G+ NAL A L A+G+ A L L + + + RF+ V Sbjct: 250 RVKGEKVLNTAEMKMAGQHNYTNALAALALADAVGLPRASSLAALTQFNGLAHRFQLV 307 >gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 216 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 15/117 (12%) Query: 43 GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102 G +FVA+ G + D H F +A A GA A++VS + + P ++V +TR+ Sbjct: 4 GCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DLPQVIVKDTRQAF 54 Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159 A+ + + P ++A+TG+SGK+SV I + G + + T S+F D Sbjct: 55 GQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLY------TASNFNND 105 >gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl-ligase [Streptococcus oralis Uo5] Length = 457 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 80/385 (20%), Positives = 152/385 (39%), Gaps = 56/385 (14%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +SIF + ++ + DSR I G +FV + G + DGH FI A GA VV+ Sbjct: 16 NDVSIF----EDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S +N P ++VD+ A+ K ++ AVTG++GK++ + Sbjct: 67 ------LSEKEVANHPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194 + ++++ T +N + P + +G + +E H Sbjct: 121 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165 Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250 D H L + + L G H+ + + + KM++ + + P +PA +D Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVED 225 Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 K+V++ A V + I K +T + P+ G Sbjct: 226 YLPTDKKVIRFGQGAELEVTDL--------------IERKDSLTFKANFLEQALDLPVTG 271 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 ++ NA++AA + + G+ + + + L + R E+ + G I D Y Sbjct: 272 KYNATNAMIAAYVALQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNANPT 330 Query: 368 SLEMILKNIRTITS---GRIIVVFG 389 ++++IL+ I++ G+ I V Sbjct: 331 AMKLILETFSAISANEGGKKIAVLA 355 >gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium 3_1_46FAA] Length = 473 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 49/335 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ R+++ V DSR + +F+AI G + DGH FIP+ + QGA A S +D Sbjct: 22 EFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGA-----LCAVSEEDLG 76 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 S + + K ++ R ++ ++G+ GK+S + + + Sbjct: 77 DVPYSYIKVASCEQALKDIAEHYRRSLDI---KVVGISGSVGKTSTKEMIASVLSQ---- 129 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + T +F +N + P ++ + ++ + E + R D Sbjct: 130 --KYSVLKTEGNF--NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICV 185 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259 L TN+G H++ ++ AK +F + + I+ DD YS E Sbjct: 186 L-----TNIGVAHMENLGSRDGILKAKTEMF-AYMNENGTIILNGDDDKLRGYSPE---- 235 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310 G + L + C H + + G D F P +PG Sbjct: 236 ----------NGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAH 285 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VYNAL A + A+G+ + +E + GR Sbjct: 286 MVYNALAATAVGYALGMTDREICAGIEANVPIAGR 320 >gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Photobacterium damselae subsp. damselae CIP 102761] Length = 460 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 13/119 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I+EVS+D+R+I A +FVA+ G + D H F A GA A++VS ++ Sbjct: 21 DTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGAVALLVSRHLPVE------ 74 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSG 141 P ++V +TR L L + L + + LA+TG+ GK++V I G Sbjct: 75 ---LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTTVKEMCAAILATKG 130 >gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3 str. Loch Maree] gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str. Loch Maree] Length = 458 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 63/328 (19%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCA---IHNKQQVTISVEGKDFDF 302 + ++K A+ C V++ G I +K C + Q SV+ Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFDVFKDNQKLFSVK------ 276 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 +PG+ + N+L A +CI + D ++E +E RFE G + I Sbjct: 277 -LNVPGKHNILNSL--ASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-D 332 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF 388 DYAH + L + ++ VF Sbjct: 333 DYAHHPTEISATLDAAKKYPHNKMFCVF 360 >gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1 str. Okra] gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str. Okra] Length = 458 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/325 (21%), Positives = 126/325 (38%), Gaps = 57/325 (17%) Query: 82 FSATIRSNTPILVVDNTRKFLSL-----FASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 ++A I S+ P +++ K + L F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNP-EIIEAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHV 132 Query: 137 CQRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 ++ + PT + N S ++ +A Y SS Sbjct: 133 ALKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF------------- 174 Query: 194 LDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251 +K G N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 --------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDK 225 Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFP 305 + ++K A+ C V++ G I +K C + + K F Sbjct: 226 NIQSIIKEAN---CNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLN 278 Query: 306 LPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 +PG+ + N+L A +CI + D ++E +E RFE G + I DYA Sbjct: 279 VPGKHNILNSL--ASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYA 335 Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388 H + L + ++ VF Sbjct: 336 HHPTEISATLDAAKKYPHNKMFCVF 360 >gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC 2396] gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396] Length = 472 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 96/426 (22%), Positives = 163/426 (38%), Gaps = 65/426 (15%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 GA +V SSA + + T + I V+ L R + +A+ GT GK Sbjct: 73 GANVVVTSSAVAKDNPEVTAANEQRIPVIARAEMLAELMRYR-------HGVAIAGTHGK 125 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++ S + + +GL PT F RL + A YL ++ + Sbjct: 126 TTTTSLMASVLGEAGLD-----PT-----FVIGGRLNSAGTNAKLGASRYLVAE-----A 170 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKE 241 E+ + L H + ++ TN+ DH+ D+ + +Q + + F LP Sbjct: 171 DESDASFL--HLTPMVSVV----TNIDADHMHTYGGDFEKLKQTFVD-----FLHNLPFY 219 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298 A++ DD +E++ R G V++ G+ K ++ V Q + + + Sbjct: 220 GVAVMCYDDPVVREIIPRV---GRSVITYGFNEK-ADVRAVDIAQQGMQTSFTAKRPGGH 275 Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRG 355 D +PG+ V NAL + GI ++ L K V RF+ G G Sbjct: 276 PDLRISLNMPGKHNVLNALAVIAVATDEGIADEAIVSALNKFQGVGRRFQVYGNYPVDEG 335 Query: 356 GRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLAD 411 + V DY H ++ +K IR R++ VF R R + L D Sbjct: 336 SVMLVDDYGHHPREVDATIKAIRDGWPEKRLVAVFQP--HRYTRTRDLYEDFVQVLSKVD 393 Query: 412 IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462 + ++ D P E P + I P FIE+G ++A+ + + L D+L Sbjct: 394 VLVLMDVYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIERGQDVKAVLSGV--LQDGDLL 451 Query: 463 VVAGKG 468 + G G Sbjct: 452 LTQGAG 457 >gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter denitrificans OCh 114] gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter denitrificans OCh 114] Length = 464 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 98/259 (37%), Gaps = 33/259 (12%) Query: 101 FLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 F FA+ + ++AVTG++GKS+ ++ + I + +G +T++ Sbjct: 104 FFRSFATNAWANFDTAPRVVAVTGSNGKSTTSALIHHILE-------HVGRPATLAGNIG 156 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 L P V +E SS+ D R + FTNL DH+D Sbjct: 157 RGVLDIDPP------------HDGEVVVLELSSYQTDLAR--SLTPDVAVFTNLSEDHLD 202 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-- 276 H YF AK RLF E P + + D+ A RV+ + + K Sbjct: 203 RHGGMGGYFAAKRRLFAEGGPDRAIVGVDEDEGLFLAGQLAEGRADDRVIRISFAQKLTG 262 Query: 277 -----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 K + + K + SV D + LPG NA A +C ++G+ + Sbjct: 263 PGWQVFARKGFLSEYRKGKQIASV---DLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKV 319 Query: 332 VLEHLEKLHVVPGRFEFVG 350 + L +P R + VG Sbjct: 320 IEAALHSFQGLPHRSQLVG 338 >gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae DSM 15829] gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium vaginae DSM 15829] gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium vaginae DSM 15829] Length = 493 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 11/193 (5%) Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A N+ DHI++H + QAY AK R+F L + AII DD Y K + R G Sbjct: 184 AAILLNITPDHIEWHGSMQAYAAAKERIFAN-LTTDDLAIISRDDLYCKAIYSRLVERGL 242 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL----FPLPGEFQVYNALVAAGL 321 + V L+ A + + + + G + L G + N L A+ L Sbjct: 243 SPVCVDTSQDPKTLQA--AYCSDSMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASAL 300 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + IG+ + + L+ + R E+V T G +V+ + +N+ + + K + Sbjct: 301 ALFIGVSVDAIRQVLQTFTTLEHRLEYVATIH--GVSFVNDSKATNT-DSVEKALTAFPC 357 Query: 382 GRIIVVFGCGGDR 394 G IV+ G G D+ Sbjct: 358 GSTIVLLG-GHDK 369 >gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum infernorum V4] gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum infernorum V4] Length = 442 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 66/308 (21%) Query: 94 VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----P 149 +V FLS + P + VTG+ GKS+ +S + + + G ++ G P Sbjct: 100 IVSQADIFLSFW--------PGKTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGGNIGIP 151 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + FA + KA++ L ++ +E H I L + Sbjct: 152 PFHLLPFADE------------KAIAVLE---LSSYQLEYCKHS------PAIAL----W 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 NL +H++YH + +AY AK + PK+ D A ++ + G + Sbjct: 187 LNLFHEHLNYHGSFEAYAQAKSHIGRFQSPKDYFIYDPGDQALELFLLSQEKMPG---IP 243 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329 + +GK + QV +S G +PG NAL AA + + +G+ + Sbjct: 244 LPVEGK-----------GRSQVDLSRLG--------IPGRHNKKNALFAARVALLLGMPA 284 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389 + E L +P R E+V T GG Y + + S E L I I S R ++V Sbjct: 285 EAISEALSSFRGLPHRLEYVAT--VGGISYYNDS-ISTVPEATLAGIEAIPSVRTLIV-- 339 Query: 390 CGGDRDQG 397 G +D+G Sbjct: 340 --GGQDRG 345 >gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio vulgaris DP4] Length = 478 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91 V SDSR + G +FV I G + DGH F + QGA ++ F+ S + Sbjct: 29 VRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAER----DPFNGECPSADVT 84 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 I+VV ++ K L A+ + ++ VTGT+GK++V + Q+ Sbjct: 85 IMVVGDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQV 129 >gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces coelicolor A3(2)] gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces lividans TK24] gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces coelicolor A3(2)] gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces lividans TK24] Length = 471 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 32/209 (15%) Query: 64 IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + +G E IV + + F+A ++ P+ L+ L G+ P LAVT Sbjct: 66 LPEGTELIVTAPGWKPTKPLFTAAGQAGVPVW----GDVELAWRLRGLNGRKPAPWLAVT 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT+GK++ + I + +GL + +G + L A++ Q Sbjct: 122 GTNGKTTTVQMLASILKAAGLRTAAVGNIG----------------VSLLDAVT--GEQE 163 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++VE SS+ L H ++ + + NL DH+D+H + +AY K R++E Sbjct: 164 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 217 Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 A +Y AD A V GCR + Sbjct: 218 HVACVYNVADKATEDLVRAADVEEGCRAI 246 >gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM 13280] gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM 13280] Length = 468 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 122/298 (40%), Gaps = 34/298 (11%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 PE A+TGT+GK++V S ++ + SGL S +G D R ++A+ Sbjct: 109 PERWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGNAPIHEVDRR--EEGEWFVAEL 166 Query: 174 LSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 SY L++ H V NL DH+ +H++ + Y AK+R Sbjct: 167 SSYQLATTEAFHPRVAV-------------------LLNLSPDHLAWHRSHENYALAKIR 207 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 +F+ + + AI+ +D + R G RVL +G+ +T Sbjct: 208 MFKNMDDGDI-AIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFV---RDDVLT 263 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + + G + + + G V NAL A+ +A G V L + +P R E Sbjct: 264 VRMAGDEHALVRVDELRIVGAHNVLNALAASAAALACGASVTGVCSGLREFKPLPHRLEP 323 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 V T G YV+ + +N+ + +L + RI+++ G G D+ M K+A Sbjct: 324 VDTVD--GVRYVNDSKATNT-DAVLTALAAFDGARIVLLLG-GSDKGTPLEEFMAKVA 377 >gi|20094483|ref|NP_614330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus kandleri AV19] gi|19887585|gb|AAM02260.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus kandleri AV19] Length = 470 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 37/283 (13%) Query: 201 GIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 GI+L G TN+ +H+D + + + Y K+ + E S ++ D +E+ KR Sbjct: 183 GIELDVGVLTNVSPEHLDEFGGSFERYVRRKLTITEM-----SEVLVAGYDC--EELRKR 235 Query: 260 AHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYN 314 ++A R Y G+ ++ + V+G D + F L G + V N Sbjct: 236 LNDAVWYSVRDPDADYYGR------------RENGRLVVKGPDASVEADFHLIG-YYVEN 282 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVDYAHTSNSLEMIL 373 A C+ G D V E L VPGR E +G S GR+ Y+D AH + L+ L Sbjct: 283 CTGAVAACLEFGADPEGVAEGLATFEGVPGRMELLGEFS--GRVAYIDAAHNPDGLKASL 340 Query: 374 KNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430 R + GR++V + + G+I + AD + N E ++ A Sbjct: 341 PPFRELADERGGRLLVSVDNPDTVTERDKFEFGRIVGEYADFVAASGYNETLERLDRSAA 400 Query: 431 -EIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVVAGKG 468 E++ G +G ++++R A E + + DVL+ G G Sbjct: 401 EEVVKGAESAGCEGVAVDSVREAAEEVAARSEEGDVLLHVGPG 443 >gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus fusiformis ZC1] Length = 461 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 11/188 (5%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGC 265 G TN+G H+D + Y AK + E + ++ II ADDA +K++ +KR Sbjct: 185 GIITNIGVHHLDGCLNLEGYIKAKAEIVEGI-KEDGTLIINADDANTKKISLKRFKG--- 240 Query: 266 RVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +++ G Q + KV + + + V + ++ P GE QVYNAL A Sbjct: 241 KIIKFGLQDTADYKASKVEFANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIAASHE 300 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTI-TS 381 +G+ + L + EF T G +D T+N S+E LK I T+ Sbjct: 301 MGLTIRQAIAGLRTFKQMARHLEF--TTGLGDSTIIDDTWTNNPTSVEAALKVIDTVGKD 358 Query: 382 GRIIVVFG 389 ++I+V G Sbjct: 359 KKVILVLG 366 >gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Treponema denticola F0402] Length = 430 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 132/346 (38%), Gaps = 83/346 (23%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI----RS 88 V DSR+++ +F+ + G +DGH++I A+ GA+ VV Y ++ +A + Sbjct: 41 VVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLSLCKNY 100 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + + V N K L A K P N+ + +TG+SGK++ + I + Sbjct: 101 DASCVAVKNNLKALQDAARYYLSKFP-NLYKIGITGSSGKTTTKEILASIYSKK------ 153 Query: 147 IGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +T+S+ N T P ++ + H EA L +R I I Sbjct: 154 ---YNTVSTKGNLNSETGLPLSVFEVRP---------EH---EAGIFELGMNRKGEIAEI 198 Query: 206 AGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEEL-------------------LP 239 A TN+G HI T+QA K +F +P Sbjct: 199 ASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDALGFIPECEFTDFLKDVP 258 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 + S + +D+ ++++ +AG + Y+G+ Sbjct: 259 RGSVFTVSDNDS---SLVQKVEDAGVLGSKIFYRGE------------------------ 291 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + LFPLPG + V NAL+ L G + + LE + + GR Sbjct: 292 -EILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGR 336 >gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella nitroferrum 2002] Length = 453 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/302 (24%), Positives = 121/302 (40%), Gaps = 24/302 (7%) Query: 15 INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74 + QL+ + + ++ V +DSR G +FVA+ G D H F+ +AQGA +V Sbjct: 7 VAQLAGGRLAGADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVR 66 Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134 QDF+ ++ VD+TR L A+ + ++ +TG++GK++V + Sbjct: 67 -----QDFAL---PGVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLT 118 Query: 135 QI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 I +G + +T +F D L A + G+ H G Sbjct: 119 AILAAHAGRDTV----LATAGNFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTG 174 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF-NAKMRLFEELLPKESPAIIYADDAY 252 L + R + L+ N R H+ + A AK +FE L ++ A+I ADD + Sbjct: 175 LARPR---VALV----NNALRAHLGGGFSGTADIARAKSEIFEG-LAEDGVAVINADDPH 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 + A R+LS G ++ + V + D P PGE V Sbjct: 227 AAIFRAAAAG--RRLLSFGLGEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNV 284 Query: 313 YN 314 N Sbjct: 285 RN 286 >gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia tasmaniensis Et1/99] gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia tasmaniensis Et1/99] Length = 438 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 40/237 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G +Q+G I A L P+ +Y+ + S+ Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIGLPAL-TLLQQPAQLYVLELSSF 162 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 +E +S +K A + N+ DH+D Y Q Y AK+R++E Sbjct: 163 ---------QLETTSS---------LKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYE 204 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 + ++ ADDA + + A R +S G HL + + + V Sbjct: 205 ----NATACVVNADDAMTMPI----RGADARCVSFGADFGDYHLTR-----QQGSTWLRV 251 Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +G+ + D + L G+ NAL A L A+G+ A L+ L + +P RF+ V Sbjct: 252 QGEKVLNTDEMH-LVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQLV 307 >gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio harveyi HY01] Length = 454 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V + N Sbjct: 24 IESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQK---------RVNVN 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +++ L A+ ++ +A+TG+ GK++V V I Q G F G Sbjct: 75 VPQVVVGDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133 >gi|184201130|ref|YP_001855337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila DC2201] gi|183581360|dbj|BAG29831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila DC2201] Length = 513 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 28/188 (14%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 L+ +R G+ L +TGT+GK++ I Q +GL + +G Sbjct: 130 LAWRVNRREGRKSPEWLCITGTNGKTTTVGMTASILQAAGLKAVAVG------------N 177 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 + TP L + Y ++VE SS L H + + +A + N+ DH+D+H Sbjct: 178 VGTPILDALRDPVEY------DVLAVELSSFQL--HWMHSVSPLASAVLNVAEDHVDWHG 229 Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHL 279 + + Y K R++E A +Y D E + A + GCR +VG+ + L Sbjct: 230 SYENYRADKSRVYE----NTRVACVYNADQPGAEELVEAADVVEGCR--AVGFTTQHPGL 283 Query: 280 KKVCAIHN 287 V + + Sbjct: 284 SMVGVVED 291 >gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide synthase [Streptococcus mutans UA159] Length = 452 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 18/124 (14%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +S+F + IN + DSR I+ G +F+ + G + DGH FI A A GA A Sbjct: 16 NDVSLF----EDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGAVAT---- 66 Query: 76 AYSLQDFS-ATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 FS I S+ P ILVVD + F L A K +++AVTG++GK++ + Sbjct: 67 ------FSEKNITSDYPYILVVDCLKAFQDL-AQYYLEKMRVDVIAVTGSNGKTTTKDMI 119 Query: 134 QQIC 137 I Sbjct: 120 ATIL 123 >gi|294783651|ref|ZP_06748975.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA] gi|294480529|gb|EFG28306.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 1_1_41FAA] Length = 463 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGC 265 TN+ DH+D H N K E +L + +II D SK +M K Sbjct: 173 TNIDADHLDVHGNLD---NIKKSFIEFILHTQKESIICMD---SKNLMDAISKLPEGKSV 226 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 S+ + I+ K + + K +V ++ E K +F +PGE + N+L L + Sbjct: 227 TTYSIKDENADIYAKNIRIVDRKTIFEVYVNKELKG-EFSLNIPGEHNIQNSLPVIYLAL 285 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILK 374 G++ + E L + R++ + G+ ++ RI DYAH ++ LK Sbjct: 286 KFGLNKDEIQEALNQFKGSKRRYDVLYDQELENGYGSKTKRVRIVDDYAHHPTEIKATLK 345 Query: 375 NIRTITSGRIIVVF 388 I+++ + R++ +F Sbjct: 346 AIKSVDNSRLVAIF 359 >gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18] gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18] Length = 499 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 104/432 (24%), Positives = 173/432 (40%), Gaps = 59/432 (13%) Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRS 140 S IR + P LV + L S ++AV GT GKS+ +S + + + Sbjct: 94 STAIREDNPELVAARAQGLRVLHRSEALAAVMGESQVVAVAGTHGKSTTSSMISVMFDQL 153 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTT--PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197 G SF +G + I+ + L P I++A+A + S ++ Sbjct: 154 GAQPSFAVG--TVIAGRGMNAHLGAQGPGSIFVAEA--------------DESDGSFVRY 197 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 R I ++ TN+ DH+D+++T + F A R L P + ADDA + ++ Sbjct: 198 R-PAIAVV----TNVEPDHLDFYETDERVFEAFNRFVGSLAPN-GVVVTCADDAGAADLA 251 Query: 258 KRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVT---------ISVEGKDFDFLFPLP 307 R+ AG V++ G + + ++ + + + EG+ D +P Sbjct: 252 ARSRAAGVPVVTYGESADADLRISEITSAGSSSSSHLSWSFECHGVRYEGEQ-DLALKVP 310 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G NA A + G ++A + L + RF G + G +++ DYAH Sbjct: 311 GIHNQLNASAAFASALISGYEAADIARALAEFVGADRRFTLRGEVA-GVKVFDDYAHHPT 369 Query: 368 SLEMILKNIRTITSG-RIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423 + L+ RT+ G + V+F R+ K AL +AD A V D P E Sbjct: 370 EVFRALETGRTVADGHNLYVIFQPHLFSRTREFAKEFAQ---ALSMADRAHVLDIYPARE 426 Query: 424 DP-EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGH---------ET 471 P E + +E+I G GF E +AI + D+++ G G E+ Sbjct: 427 LPIEGVTSELITG-AGFSEVRYATAEDAIEDIVTCAQDGDIVMTVGAGDVTALGARLLES 485 Query: 472 VHIVTNGEKKMS 483 + I GE K S Sbjct: 486 LEIRHGGESKKS 497 >gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans ES-2] gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans ES-2] Length = 466 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 132/340 (38%), Gaps = 62/340 (18%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127 A+ +VVS+A S + I VV L R +AV GT GK+ Sbjct: 65 ADVVVVSTAVSQDNPEVVAARARHIPVVPRAMMLAELMRLR-------QGIAVAGTHGKT 117 Query: 128 SVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 + S + R G +F IG ++S + +L T I Sbjct: 118 TTTSLTASVLARGGFDPTFVIG--GKLNSSGTNAKLGTGEFIV----------------- 158 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKE 241 VEA L I + TN+ DH+ D+ + +QA+ + F E LP Sbjct: 159 VEADESDASFLYLQPILAVV---TNIDEDHMETYGHDFAKLKQAFID-----FIEHLPFY 210 Query: 242 SPAIIYADDAYSKEVMKR----------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ DDA +E++ R + +A R ++V ++G + C +Q Sbjct: 211 GRAMVCVDDANIREILPRVTKPVTTYGFSEDAQIRAINVRHEGGKMCFTAQC----RQNG 266 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 T +D LPG V NAL A + + IG+ ++ L++ V RF+ G Sbjct: 267 T----PRDLVITLNLPGRHNVLNALAAIAIALEIGVADDAIIAALDEFEGVGRRFQRYGE 322 Query: 352 NS--RGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVV 387 + GGR + DY H + L +R GR +V+ Sbjct: 323 IALPEGGRFTLIDDYGHHPVEMAATLAAVRGAFPGRRLVL 362 >gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces cf. griseus XylebKG-1] Length = 473 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 32/238 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F A G + DGH + +A+ GA A++ + + P +VV Sbjct: 34 DSREVAPGSLFAAFAGERVDGHDYARRAVEAGAAAVLAARPVGV-----------PAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 ++ L A + + ++ +TG++GK+S + Q+ QR G + + G Sbjct: 83 EDVVGALGALARAVVERLGTTVVGLTGSAGKTSTKDLIAQLLQRKGPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLG 213 + +N + P + ++ H+ +E + G+ R D G N+G Sbjct: 136 -SLNNEIGLP-------VTALTATAATEHLVLEMGARGIGHIRYLADLTPPRIGLVLNVG 187 Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 H+ +++A AK L E+LP++ A++ ADD + + R RVL G Sbjct: 188 SAHLGEFGSREAIAQAKGELV-EVLPEDGCAVLNADDPLVRAMASRTR---ARVLLFG 241 >gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces lividans TK24] Length = 475 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 32/209 (15%) Query: 64 IAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + +G E IV + + F+A ++ P+ L+ L G+ P LAVT Sbjct: 70 LPEGTELIVTAPGWKPTKPLFTAAGQAGVPVW----GDVELAWRLRGLNGRKPAPWLAVT 125 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT+GK++ + I + +GL + +G + L A++ Q Sbjct: 126 GTNGKTTTVQMLASILKAAGLRTAAVGNIG----------------VSLLDAVT--GEQE 167 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++VE SS+ L H ++ + + NL DH+D+H + +AY K R++E Sbjct: 168 YDVLAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE----GN 221 Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 A +Y AD A V GCR + Sbjct: 222 HVACVYNVADKATEDLVRAADVEEGCRAI 250 >gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga hutchinsonii ATCC 33406] gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga hutchinsonii ATCC 33406] Length = 450 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 76/361 (21%), Positives = 147/361 (40%), Gaps = 48/361 (13%) Query: 113 HP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 HP +A+TG++GK++ I + G + +G I + + +Y+ Sbjct: 102 HPGAKFIAITGSNGKTTTTLLTHHILAQLG---YSVGLGGNIGTSLARQIIHEKKDVYV- 157 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAK 230 +E SS LD + K N+ DH+D ++ + + Y +K Sbjct: 158 ---------------LELSSFQLDD--MYTFKADVAVLLNITPDHLDRYEYKFENYTASK 200 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIH 286 R+F+ L P + I Y++D+ E K+ H R + V Y +K IH Sbjct: 201 FRIFQNLTPADY-YITYSEDSVI-ESYKKDHPVDARYVPVSLKQLYSAGAYSDEKTIQIH 258 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 ++ ++F PL G+ N + A ++IG D + ++ P R Sbjct: 259 ALDDTVVTCNTEEF----PLQGKHNYINIMAALNAAVSIGADIHKSIASIKSFRNAPHRL 314 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGK 404 EFVG S G +V+ + +N ++ + + ++ + +++V G G D Q + + K Sbjct: 315 EFVG--SIYGVKFVNDSKATN-VDSVWYALDSMKTPVVLIVGGVDKGNDYSQIEALVKEK 371 Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464 + +A +D K+ + + E + +EAIR A + K D +++ Sbjct: 372 VHTVVA----------LGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKKGDTVLL 421 Query: 465 A 465 + Sbjct: 422 S 422 >gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella termitidis ATCC 33386] Length = 435 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/353 (20%), Positives = 146/353 (41%), Gaps = 60/353 (16%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +IN V +S ++ +F+AI G G+ +I +A +GA Y + D Sbjct: 24 EINNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA--------YVIYDDKTKKTP 71 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 +V+++ KFL FA I+ +TG++GK++V + Q+ LS+ G Sbjct: 72 YPKAFLVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQL-----LSTKYKG 126 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + + +N + P + A+ +S + + S G +D + IA Sbjct: 127 KKTEGN---LNNHIGLPVSLLRAE-----NSDDFLVLEMGMSGFG----EIDLLAAIAKP 174 Query: 207 --GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G TN+G H+++ +++ F AK + + + K + DD + ++ G Sbjct: 175 DYGIITNIGDSHLEFLGSRENVFKAKSEIIKHVKAK---MFLNGDDPFLGDL------PG 225 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP------GEFQVYNALVA 318 +V + G K A + + + +S +G FD L GE + N L Sbjct: 226 IKVSADG---------KSTADYRAKNINLSGDGTKFDLNEGLTLETNLIGEHNILNLLFG 276 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 + GI + + + + + + RF+ + G IY++ A+ ++ + M Sbjct: 277 IAISEEFGIKTEDLADEFKNIKLTAMRFQKI---ENGNIIYINDAYNASPISM 326 >gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756] Length = 483 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 49/335 (14%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ R+++ V DSR + +F+AI G + DGH FIP+ + QGA A S +D Sbjct: 32 EFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVMEQGA-----LCAVSEEDLG 86 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 S + + K ++ R ++ ++G+ GK+S + + + Sbjct: 87 DVPYSYIKVASCEQALKDIAEHYRRSLDI---KVVGISGSVGKTSTKEMIASVLSQ---- 139 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 + T +F +N + P ++ + ++ + E + R D Sbjct: 140 --KYSVLKTEGNF--NNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVARPDICV 195 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259 L TN+G H++ ++ AK +F + + I+ DD YS E Sbjct: 196 L-----TNIGVAHMENLGSRDGILKAKTEMF-AYMNENGTIILNGDDDKLRGYSPE---- 245 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEF 310 G + L + C H + + G D F P +PG Sbjct: 246 ----------NGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAH 295 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 VYNAL A + A+G+ + +E + GR Sbjct: 296 MVYNALAATAVGYALGMTDREICAGIEANVPIAGR 330 >gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis NCTC 9343] Length = 432 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 160/365 (43%), Gaps = 38/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91 V++DSR+ AG +F+A+ G +G+ F QA+ G A AIV + Y+ ++ N Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I++VDN + L A+ + ++ +TGT+GK++ + + +S + G Sbjct: 69 IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +N + P + KA L+ + + A+ G + + + G TN Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGMITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G+ H++ + + K L++ L KE S I+ D+AY +M AH G ++ Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAH--GLNLIPY 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326 G + V N +T + GKD D L GE+ NAL A + G Sbjct: 231 GSEDALYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384 +++ + E L R + T + +D A+ +N M+ L+N R +T + Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVKKK 345 Query: 385 IVVFG 389 +++ G Sbjct: 346 MLILG 350 >gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus str. Walvis Bay] Length = 454 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 123/316 (38%), Gaps = 40/316 (12%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S + +I +GL PT I L Sbjct: 108 IAVAGTHGKTTTTSLLAEIFTAAGLD-----PTVIIGG--------------------RL 142 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----TNLGRDHIDYHQTQQAYFNAKMRL 233 +S G E + DG L+ TN+ DH+D++ QQA A Sbjct: 143 NSWGANAYLGEGEYLIAEADESDGSFLVLAPIITIVTNVDADHLDFYPDQQAIDRAFTE- 201 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 F +P ++ DD + ++ R+++ G + ++ + + + Sbjct: 202 FMNKVPFYGVNVVCGDDPGVERILPGIRR---RIMTYGLRPGNRIRGEITSCQERCIFKL 258 Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 V+ + + D + PG V N++ A G+ + G+ +L+ LE+ V RFE G Sbjct: 259 YVDEEYWADVVLNKPGRHNVLNSMAAIGVALEAGLPKEAILQGLERFGGVGRRFEIKG-- 316 Query: 353 SRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDL 409 +GG + V DY H + L + R +VV R + + G D+ Sbjct: 317 EKGGILVVDDYGHHPAEIGATLATAKDCYPERRLVV-AFQPHRFTRTKALFGDFCKVFDV 375 Query: 410 ADIAIVTDDNPRSEDP 425 AD+ ++T+ SE P Sbjct: 376 ADVLLLTEIYAASEAP 391 >gi|127514380|ref|YP_001095577.1| UDP-N-acetylmuramate--alanine ligase [Shewanella loihica PV-4] gi|166224729|sp|A3QIM0|MURC_SHELP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|126639675|gb|ABO25318.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella loihica PV-4] Length = 484 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 139/342 (40%), Gaps = 63/342 (18%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR----KFLSLFASRLYGKHPENILAVT 121 +GA+ +VVS+A SN IL R + + A + +H +AV Sbjct: 79 EGADVVVVSTAIDA--------SNPEILAAQERRIPIVRRAEMLAELMRYRHG---VAVA 127 Query: 122 GTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSY 176 GT GK++ S + + Q +F IG ++S + RL S +A+A S+ Sbjct: 128 GTHGKTTTTSLIASVYGQAERDPTFVIG--GLLNSAGTNARLGK-SRYLIAEADESDASF 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L Q + V TN+ DH+D ++ + F Sbjct: 185 LHLQPMVSV-----------------------VTNIEADHMDTYEGDFEKLKSTFVDFLH 221 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-----V 291 LP A+ DD +E++ R G +V++ G F V A++ +QQ Sbjct: 222 NLPFYGVAVACIDDPVVREILPR---IGRKVVTYG----FSEDADVQALNFEQQGYSSRF 274 Query: 292 TISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 T+ EG D D LPG V NAL A + I+ ++ L++ + RF+ +G Sbjct: 275 TVRREGMADLDLRVNLPGRHNVLNALAAIAVATEDEIEDEAIIRALDEFQGIGRRFQQLG 334 Query: 351 --TNSRGGRIYV-DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 T + G + V DY H + + +K R+ R+++++ Sbjct: 335 EFTTTAGEVMLVDDYGHHPSEVAATIKAARSGWPDKRLVMIY 376 >gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio harveyi ATCC BAA-1116] gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116] Length = 454 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 9/119 (7%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS+D+R I+ G +FVA+VG + D H F QA+ GA A++V + N Sbjct: 24 IESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQK---------RVNVN 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +++ L A+ ++ +A+TG+ GK++V V I Q G F G Sbjct: 75 VPQVVVGDSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVASILQLKGKVLFTAG 133 >gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025] Length = 452 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 18/124 (14%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +S+F + IN + DSR I+ G +F+ + G + DGH FI A A GA A Sbjct: 16 NDVSLF----EDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFANGAVAT---- 66 Query: 76 AYSLQDFS-ATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 FS I S+ P ILVVD + F L A K +++AVTG++GK++ + Sbjct: 67 ------FSEKNITSDYPYILVVDCLKAFQDL-AQYYLEKMRVDVIAVTGSNGKTTTKDMI 119 Query: 134 QQIC 137 I Sbjct: 120 ATIL 123 >gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Hoeflea phototrophica DFL-43] Length = 477 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 94/389 (24%), Positives = 158/389 (40%), Gaps = 34/389 (8%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 E+ + P+ + +S DSR + G F AI G+K DGH F AIA GA +V Sbjct: 9 EMTEAMDGRPLGNLPDGVTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAAIATGAALLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 V+ A A R P++VV++ L + I+A+TG+ GK+S Sbjct: 69 VAEAK----LPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKTSSKEM 124 Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192 +++ + SG ++ +SF +N P + LA+ + + GV V + +H Sbjct: 125 LRRALEPSGEVH------ASAASF--NNHWGVP--LTLAR-MPASAQYGVFEVGM---NH 170 Query: 193 GLDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + L +K++ T + H+ + AK + E ++ K ++ D Sbjct: 171 PDEIRPL--VKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVV-KNGHVLLNRD 227 Query: 250 DAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-- 306 + + KRA + +VL+ G K + C + + GKD D + + Sbjct: 228 NEKFSWLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKD-DVVVKIGA 286 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365 PG V NAL G G D A L + GR + GG + +D ++ Sbjct: 287 PGRHLVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYN 346 Query: 366 SNSLEM-----ILKNIRTITSGRIIVVFG 389 +N M +L++ GR I V G Sbjct: 347 ANPASMRAALELLRDTPVRLRGRRIAVLG 375 >gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM 15641] gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM 15641] Length = 471 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 102/437 (23%), Positives = 166/437 (37%), Gaps = 67/437 (15%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVT 121 I Q AE I + A + S I N P L+ R +R+ + + +A+ Sbjct: 55 IGQAAENIPDNPAPDVVVTSTAILDNNPELIAAKARNLPIWHRARMLAQLGVGKKTIAIA 114 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ +S V S L PT I I A + S +G Sbjct: 115 GTHGKTTTSSMVA-----SALDGIGADPTFLIGG------------IVRAYHTNAHSGEG 157 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 +V VEA LD ++ TN+ DH+D++ + +AK F +P + Sbjct: 158 AYYV-VEADESDKSFTYLDPYAVL---VTNVEADHLDHYNDLEE-IHAKFTEFMSQVPDD 212 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTIS------ 294 ++ ADD + ++ A + G R+++ G +G H++ T+ Sbjct: 213 GLLVVCADD---EVLVSLAASTGKRMVTYGSAEGADAHIESWAPAGVGSTFTLKLPDGTL 269 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 VEG + PG V NA L IG D+ V L V RF+ VG + Sbjct: 270 VEGS----VKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNFAGVRRRFDLVG-EAD 324 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF--------GCGGD--RDQGKRPIMGK 404 G I DYAH + + + + R+ V+F G D R + Sbjct: 325 GVTIVDDYAHHPTEIAATIAAAKKLDFKRVHVLFQPHRYSRVGLFTDVLRSEFAH----- 379 Query: 405 IALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454 A D AD A D P E P + ++ H P + +R++ + + ++ Sbjct: 380 -AFDEADTAAFMDVYPAGETPVPGVNGKTFLDVLKDSSSH--PALVYIPHRLDTVSSLLD 436 Query: 455 MLNKQDVLVVAGKGHET 471 M+ D+++ G G T Sbjct: 437 MVEAGDLVLTMGAGDVT 453 >gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria sp. R11] Length = 470 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N +S D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + + Sbjct: 23 VNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGVSED 75 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 P+L+V++ + L + ++AVTG+ GK+S + ++ G Sbjct: 76 APLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQG 127 >gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus hydrogenoformans Z-2901] gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus hydrogenoformans Z-2901] Length = 464 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 38/278 (13%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ +S + + ++ G P + D Y AKA Sbjct: 119 IAVAGTHGKTTTSSMIAYVLEKEGFD-----PVIAVGGEIVDLG-------YNAKA---- 162 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLI--AGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 QG V+ S G +KL+ A TN+ DH+DY+Q+ + A + + Sbjct: 163 -GQGEYMVAEADESDG------SFLKLLPYAAVITNIEADHLDYYQSFEEIKKAFKKFAD 215 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTI- 293 + P E + D+ +E++K R + G+ G L+ N+ I Sbjct: 216 NIRP-EGFGVFCWDNLQVREMLKGYKK---RKFTYGFSPGSDFMLRDYREEQNQLVANIY 271 Query: 294 ---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 ++EG + +PG+ + NA A + IG+ + E L + + RF+ +G Sbjct: 272 YKNTLEG---ELRLKVPGKHNILNAAAATAVLRNIGLSFKAISERLLEFNGAKRRFQILG 328 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + G I DYAH +E L+ + ++VVF Sbjct: 329 ERN-GALIVDDYAHHPTEVEATLRAAKLYKDRDVLVVF 365 >gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Synechococcus sp. RCC307] gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. RCC307] Length = 464 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 22/228 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR +Q G +F+ + G + DGH F+ A++ G V+ A +D++ + Sbjct: 37 ISTDSRALQPGDLFIPLRGERFDGHDFLDAAVSVG-----VAGALIARDWAGYVPEQLAT 91 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 +VVD+T A + ++AVTG++GK++ ++ G +G Sbjct: 92 VVVDDTLSAYQQIALAWRRQLHCPVVAVTGSAGKTTTRELIKACLSPLGAIESSVG---- 147 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLD-GIKLIAGSFT 210 ++N + P + + + S G+ +E GL + HRL + T Sbjct: 148 ----NENNDIGVPRTMLRSNS----SHAGLV---LEMGMRGLGEIHRLSVCAEPDVAVIT 196 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 N+G HI ++ A AK + + L P I D EV + Sbjct: 197 NIGTAHIGRLGSRAAIAQAKCEITDRLKPSGLLVIPAGDPLLEAEVSR 244 >gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis IP 32953] gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis PB1/+] gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pseudotuberculosis IP 32953] gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis PB1/+] Length = 438 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++A+TG++GKS+V + V ++ + +G S IG ++ QDN+LT Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232 L S Q T S+ AS A + N+ DH D Y Q Y AK+R Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++E I+ ADDA + V A R +S G HL NKQQ Sbjct: 202 VYE----NAKVCIVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I + + L L G NAL A L A+GI A L+ L +P RF+ Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306 Query: 349 V 349 V Sbjct: 307 V 307 >gi|326382560|ref|ZP_08204251.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL B-59395] gi|326198679|gb|EGD55862.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL B-59395] Length = 492 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 109/291 (37%), Gaps = 32/291 (10%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----NAGC 265 TN+ DH+D+ ++ AY F L+ ++ DD + + R G Sbjct: 193 TNIEADHLDFFGSEAAYVQV-FDDFVALIRSGGTLVLCLDDPGAAALAARCQADCARRGV 251 Query: 266 RVLSVGYQGK--------FIHLKKVCAIHNKQQVTISV------EGKDFDFLFPLPGEFQ 311 VL G G L V T+ + + + + LPG Sbjct: 252 TVLGYGSTGHTPVDGVPVVAELAAVVPHGAGSVATVRLSSPLVEKAQTRELAVTLPGRHM 311 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A C G D V +E V RFE G +R +Y DYAH + Sbjct: 312 ALNALGALIACTRTGQDVDAVAAGIESFGGVHRRFELRG-RARDVDVYDDYAHHPTEVRA 370 Query: 372 ILKNIRTIT---SGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426 +L R + SGR+I VF R P G+ AL LAD IV D E P+ Sbjct: 371 VLTAAREVVAAGSGRVIAVFQPHLYSRTAEFAPQFGE-ALSLADDVIVADVYGAREQPQP 429 Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473 ++ ++ + G F+ +RI E + D+++ G G T+ Sbjct: 430 GVTGRLISDAVAGPAAFVPDASRIA--DAVAERARRGDLVLTIGAGDITMQ 478 >gi|187777289|ref|ZP_02993762.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC 15579] gi|187774217|gb|EDU38019.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC 15579] Length = 873 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 83/366 (22%), Positives = 148/366 (40%), Gaps = 38/366 (10%) Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 505 KVGMTTTGGIYINNKCIDKGDTTGYYSARTVLTNKEVEVAVLELARGGLIKAGLPYDLAD 564 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPAIIYADDAYSKEVMKR----- 259 G TN+ DH+ A ++ L E + K+ +I ADD S ++ R Sbjct: 565 VGVITNITEDHLGLGGINTLEDMAYVKSLVGEAVKKDGYVVINADDKASLNIIDRMTSKI 624 Query: 260 ---AHNAGCRVLS---------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 N ++S V + I+L+ + N+ + I+V L Sbjct: 625 ILFTKNKNNPIVSKYLNNKNLIVYLEENIIYLQNL----NENKEIINVNKAPITLGGKLT 680 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYAH 364 + + N + + IA+G+D + E LE PGRF N G + +DY H Sbjct: 681 --YNIENIMASIAALIALGLDINTIREGLESFTNEEQNPGRFNMY--NVHGTNVILDYGH 736 Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSE 423 +++L++++ I RII V G GDR +G I + D V +D + R Sbjct: 737 NIEGYKVVLESVKKIDHKRIIGVIGVPGDRTNSSTLKVGNICGENFDYIYVKEDRDKRGR 796 Query: 424 DPEKIRAEIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVVAGKGHE-TVHIV 475 + +I + GI K +++ EA++ AIE D++++ + E +IV Sbjct: 797 EHGEIAGLLKKGILEMGFKNSKLDIILDEEEALKKAIEFSEPGDLVIMFFEEFEPAANIV 856 Query: 476 TNGEKK 481 N KK Sbjct: 857 KNKIKK 862 >gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina NCIMB 400] gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina NCIMB 400] Length = 485 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 41/271 (15%) Query: 118 LAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +A+ GT GK++ S + + Q +F IG ++S + RL T S +A+A Sbjct: 123 VAIAGTHGKTTTTSLIASVYGQADRDPTFVIG--GLLNSAGTNARLGT-SRYLIAEADES 179 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S+L Q + V TN+ DH+D + Sbjct: 180 DASFLHLQPMVSV-----------------------ITNIEADHMDTYGGDFEKLKTTFV 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 F LP A++ DD +E+M R G +V++ G+ + ++ + N Q + Sbjct: 217 DFLHNLPFYGVAVMCIDDEVIREIMPRI---GRQVVTYGFSEE-ADVQAINFAQNGHQSS 272 Query: 293 ISVE--GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +V+ GKD D + LPGE V NAL A + ID + +++ L + + RF+ + Sbjct: 273 FTVKRHGKDNVDIVLNLPGEHNVLNALAAIAVASEDDIDDSAIVQALAEFEGIGRRFQHL 332 Query: 350 GT-NSRGGRIYV--DYAHTSNSLEMILKNIR 377 G + G + + DY H + + +K R Sbjct: 333 GEFETPNGSVMLVDDYGHHPSEVLATIKAAR 363 >gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas sp. T7-7] gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas sp. T7-7] Length = 509 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 38/211 (18%) Query: 102 LSLFASRL-----YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156 + LFA L G P+ +LA+TGT+GK++V + +Q+ Q SG ++ G Sbjct: 113 IELFARALADMADQGYQPK-VLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNI------ 165 Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRD 215 SP L L++ + V V E SS L+ R + A N+ +D Sbjct: 166 ---------SPAALTALSDALAADDLPEVWVLELSSFQLESVRT--LSPDAAVVLNVTQD 214 Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVG 271 H+D+H + QAY AK R LL AI+ DD A + +V A + R + V Sbjct: 215 HLDWHGSMQAYAAAKAR----LLGMSRVAIVNRDDPLVMAMADDVKALAVRSFGRDMPV- 269 Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 Y+G + L++ N + E DFD Sbjct: 270 YEGD-LGLER----SNDMLWLAAAEANDFDL 295 >gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088] gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088] Length = 510 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 +PG + N+L + +A+G+ + E LE + GRFE +G G +IY+D AH Sbjct: 330 IPGIVNIENSLATITVGLALGLKMKYIKEKLENFKGIKGRFEKIG-EIDGVKIYMDAAHN 388 Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 S+E ++ N+ GR+I+ + +G+I ADI I + N + + Sbjct: 389 PESMEKVIGNLD--VKGRLIISLDNPDTLTTRDKFRIGRILSKKADILICSAKNETTGEI 446 Query: 426 EKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 + A E+ G I N ++I AIE+ K D+++ G G Sbjct: 447 DWNAAEEVARGAKECKTIITSNVRDSILKAIELSKKGDLILHIGPG 492 >gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Spirochaeta coccoides DSM 17374] Length = 477 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I ++ DSR AG +F+A+ G++ DGHL+IP AI++GA +++ + + + R+ Sbjct: 35 IRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRTG 94 Query: 90 TPILVVDNT----RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 T LV + + + S L G + +TG+ GK++ + I + Sbjct: 95 TWALVAKEPLHALYRMATEYVSLLNGV---TTIGITGSCGKTTTKEMLASILSQ 145 >gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma proteobacterium IMCC1989] Length = 473 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS ++R + G +FVAI G++ DGH F+ A QGA A+VV + S+ P Sbjct: 30 VSINTRTMSVGDLFVAIKGDQFDGHQFVANAQNQGAIALVVEKEI--------VDSDLPQ 81 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 +V +T L A I+A+TG+SGK++V ++ I + Sbjct: 82 WLVGDTTLALGHIAEAQRDNFLGKIVAITGSSGKTTVKGMLESILR 127 >gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp. P1] Length = 352 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 51/298 (17%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI----------VVSSAYSL 79 + V DSR G +F+A+ G + DGH F A+ +GA + VV+ + Sbjct: 70 VTAVEFDSRKAGPGALFLALPGERADGHDFAAGAVTRGATGVLAGRPVDAPAVVAPPAEV 129 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQ 138 +D + S P L A + G P ++ VTG++GK+S + + Sbjct: 130 RDAHTYLGSVDPDGHGAAVLAALGRLARHVLGALPGLAVVGVTGSAGKTSTKDLLAAVLA 189 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHG 193 G + + P + +N L TP A A + S++G H++ + Sbjct: 190 PQGRT---VAPPESF-----NNELGTPWTALRADAATRHLVLEFSARGAGHIAALCA--- 238 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIY 247 + R+ G N+G H+ ++ AK L E L P + P A++ Sbjct: 239 VAPPRI-------GVVLNVGSAHLGEFGSRAGIAAAKGELVEALPPGDLPGGRGGVAVLN 291 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305 ADD + R RV++ G + CA + T+ F + P Sbjct: 292 ADDELVLAMRSRTP---ARVVTFG--------RSACADVRAEDETLDAGRPSFRLVTP 338 >gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C] gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C] Length = 464 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%) Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 + ++K+ +V + ++G++ F +PG +NA+ A +A+GI + + L Sbjct: 252 VRIRKITPRGLTSEVAVVMDGREIVFTVSVPGRHYAHNAVAALTAGVALGIPADDLAAAL 311 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC---GG 392 K V R + G + G ++ YAH + L+ IR+ RI+VVF Sbjct: 312 GKYTGVKRRLQLKG-EAAGVQVIDSYAHHPTEMTADLEAIRSAAGDSRILVVFQPHLFSR 370 Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 ++ GK MG+ AL LAD ++V D P EDP Sbjct: 371 TQELGKE--MGQ-ALALADASVVLDIYPAREDP 400 >gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Algoriphagus sp. PR1] Length = 431 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 19/232 (8%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K VS+D+R I G +F A+ G D + F P+A+ QGA +V+ D I Sbjct: 11 KKSTGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVID------DPKYFIE 64 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + + + K L A+ + I+ +TG++GK++ + + Q + Sbjct: 65 DDERYFLAKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQT------KF 118 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207 +T+ + +N + P + LS + V + A+ G + + + G Sbjct: 119 KTVATVGNL--NNHIGVPLTL-----LSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHG 171 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 TN+GR H++ K LF+ L + I + D + KR Sbjct: 172 FITNIGRAHLEGMGGPAGVLKTKTELFQFLRANKGTVFINSQDPVLSNMAKR 223 >gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas sp. MWYL1] Length = 448 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 18/138 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N V +D+R I +G +FVA+ G + DGH +I QA+ +GA +V + ++ Sbjct: 25 LNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQAVQEGAVGVVSDRVVDVPNY------- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ-------ICQRSGL 142 + V D T + + A + ++ +TG++GK++V ++ Q + R+ L Sbjct: 78 --VKVFDTTLAY-GVIARLIRDAFKGPVVCITGSNGKTTVKDWLAQSLTDKNVLKTRANL 134 Query: 143 SSFQIGPTSTISSFAQDN 160 ++ QIG T+ DN Sbjct: 135 NN-QIGVPQTLLELDADN 151 >gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1] gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1] Length = 482 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 100/429 (23%), Positives = 169/429 (39%), Gaps = 68/429 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A+ +VVSSA + + I VV L R + +AV GT Sbjct: 73 AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125 Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179 GK++ S + + GL +F IG +++ + +L T S +A+A S+L Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235 Q + V + D + G F L + +++ Y A M L Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234 Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ + P + Y +S+E RA N V G Q F L++ +++ + +S Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRR-----DREPLEVS 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353 V +PG V NAL + GI +++ L V RF+ G Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPV 333 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 GG + + DY H + ++K +R S R+++V+ R R + L Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391 Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459 D + ++ + P E+ P ++ H I P +IE+G +E +L Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERG--VELAPLVKPLLRAG 449 Query: 460 DVLVVAGKG 468 D+L+ G G Sbjct: 450 DILICQGAG 458 >gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 464 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G H++Y +T + Y AK + + + PK + II A+D +K++ R Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGT-LIINAEDMNTKKI--DVSRFRGR 238 Query: 267 VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 ++ VG ++ IH + + + + K +D L P GE QVYNAL A Sbjct: 239 LIKVGKHDSCDFRASHIHYYQ-----KGMKFILHHDRKSYDILVPGFGEHQVYNALAAIA 293 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD--YAHTSNSLEMILKNIR 377 +G+ + + L+ ++ + + F G N + +D ++ T+ SLE LK + Sbjct: 294 AVHDMGMPIPVAAKQLQSFRLLKKQLQLFEGINH---SMLLDDTWSITTTSLEAALKVLN 350 Query: 378 TITSGR 383 + G+ Sbjct: 351 ELGDGK 356 >gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus denitrificans PD1222] gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Paracoccus denitrificans PD1222] Length = 461 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 152/384 (39%), Gaps = 63/384 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ + VS D+R I+ G +FVA+ + DGH F+ +A+ +GA A +VS Sbjct: 19 RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEKGACAALVSR------IPEG 71 Query: 86 IRSNTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + + P+LVV + L +R+ GK ++A+TG+ GK+S + G Sbjct: 72 VAPDAPLLVVPDVLPALEALGRAGRARMRGK----VVAITGSVGKTSTKEMARVALAGQG 127 Query: 142 L-----SSF--QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSV 187 +S+ G T++ +D + P I + L+ L+ V V+ Sbjct: 128 RVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEI---EPLARLARPHVAMVTT 184 Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247 A++H L+ I G + + A F ++ ++P++ P Sbjct: 185 VAAAH------LEAFGAIEG-----------IAREKGAIFRGLIQPGTAIIPEDLPVTQL 227 Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 D A +A V+ G QG LK + +V V G+ DF+ Sbjct: 228 LRDC--------ADDAAAIVIGFGQQGMARPLKAET-LDGVTRVRARVLGETVDFMLASA 278 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G V NA+ A G D A +HL GR + G +D A+ SN Sbjct: 279 GTHFVMNAVGMLAALSAAGADVAEAAKHLSDWRPPLGRGAVEDLD---GIRLIDDAYNSN 335 Query: 368 --SLEMILKNIRTITSGRIIVVFG 389 SL L + +T GR + + G Sbjct: 336 PTSLSAGLATLARLTGGRRVAILG 359 >gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 456 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR I G +FVA+ G + DGH ++ Q +GA +V ++ P Sbjct: 28 VSTDSRGIAPGQLFVALTGPRFDGHEYLEQVAGKGAVGALVEHEVE--------GASLPQ 79 Query: 93 LVVDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVV +TRK L+ L A + + A+TG+SGK++V + I + G Sbjct: 80 LVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGKTTVKEMLASILRTRG 129 >gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM 20162] gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM 20162] Length = 495 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 139/366 (37%), Gaps = 64/366 (17%) Query: 50 VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109 VG+ D +P G +VV++ A I + P LV + R + + Sbjct: 62 VGHSADALDLLP-----GGPTVVVTT-------HAAIPKDNPELVEAHRRGIPVILRPEV 109 Query: 110 YGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPS 166 E L V+GT GK+S S Q G + SF +G S N Sbjct: 110 LADLMEGYRTLLVSGTHGKTSTTSMAVVGLQHCGGNPSFAVGGELNESG---TNAFHGTG 166 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226 +++A+A + S L Q+ D + + TN+ DH+D+ +++ Y Sbjct: 167 DVFVAEA--------------DESDGSLLQYSPDVVVV-----TNVEADHLDFFGSEEKY 207 Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLK-- 280 A F E + ++ DD S + +R H A G RV G +G L Sbjct: 208 V-AVFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAALRARGVRVFGYG-EGTHRDLAPD 265 Query: 281 ----------KVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGI 327 K A +V S E + + +PG+ NA+ A + +G Sbjct: 266 VTLIAELLDYKPRAEGGMLKVRFSDENRQVTERAIMLSVPGKHMALNAIAATIAVVNLGY 325 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----G 382 +A V+ +E V RF+ GT G R++ DYAH + +L + + G Sbjct: 326 PTAKVIAGIESFGGVHRRFQLRGTED-GVRVFDDYAHHPTEVRAVLTAAAEMVAKQAVPG 384 Query: 383 RIIVVF 388 R+IV F Sbjct: 385 RVIVAF 390 >gi|227833490|ref|YP_002835197.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|262184478|ref|ZP_06043899.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium aurimucosum ATCC 700975] gi|254765993|sp|C3PHF5|MURC_CORA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|227454506|gb|ACP33259.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum ATCC 700975] Length = 496 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 114/302 (37%), Gaps = 46/302 (15%) Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTP 165 + L H + +LA GT GK+S S Q++GL SF IG Q NR T Sbjct: 109 AELMEGHRQVLLA--GTHGKTSTTSMAVSALQQAGLDPSFAIG--------GQLNRAGT- 157 Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 ++ G T + A + D L +A TN+ DH+DY T ++ Sbjct: 158 ------------NAHGGTGDAFVAEADESDASLLRYSPYVA-VITNIEPDHLDYFGTAES 204 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 Y+ F + + + ++ +DA + +RA G +VL G V Sbjct: 205 YYQV-FDDFADRVVEGGYLVVCLEDAQAATTGERAAQRGIQVLGYGAGSAVDEDSAVPLA 263 Query: 286 HNKQQVTISVEG--------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331 + T+S G ++ + +PG V N+ A G D A Sbjct: 264 AEILEETVSAAGAHIRVRLALPGQAPQELSYDLHVPGHHMVLNSAAALLAGALAGGDPAE 323 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIV 386 + L V RFE+ G+ RG R++ DYAH + +L R R+I Sbjct: 324 LAAGLTDFTGVRRRFEYRGSE-RGIRVFDDYAHHPTEVSAVLNAARAKADAEGEGARVIA 382 Query: 387 VF 388 F Sbjct: 383 CF 384 >gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 52/338 (15%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ + + +DSR + G FV +VG +GH F+ QA+ A+A VV+ +D + Sbjct: 26 DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEAQAAVVAR----KDHH-PV 80 Query: 87 RSNTPILVVDNTRKF---LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P +V++T + L L R ++AVTG++GK++ + RS L+ Sbjct: 81 PEGLPHWIVEDTLEAYQQLGLLHRRQLNV---PVVAVTGSAGKTTTRELI-----RSALT 132 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGI 202 P + + A +N P+ L +A S + V VE G+ + RL Sbjct: 133 -----PLGEVLASAGNNNNDVGVPLTLLQAHSDHGA-----VVVEMGMRGIGEIERLSCC 182 Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 + TN+G H+ ++ A +AK + L P+ +I A D+ ++ ++R Sbjct: 183 TQPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPR-GVIVIPAGDSLLEDALERIW 241 Query: 262 NAGCRVLSVGYQ-GKFIHLKKVCAIHNK-------------QQVTISVEGKDFDFLFPLP 307 RV+ V Q + + ++ +H + + + +EGK + PL Sbjct: 242 RG--RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGKAYT--LPLE 297 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPG 344 G N ++A +A+ + + E L L V VPG Sbjct: 298 GMHNACNLMLA----LAVARELDVCNESLSNLKVDVPG 331 >gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 454 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 47/367 (12%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + + ++ DSR I+ G +F+ + G + DGH FI +A GA A FS Sbjct: 20 EFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFENGAVAT----------FS 68 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 S P ++V + K A K +++AVTG++GK+S ++ + Sbjct: 69 EKEISGHPYILVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTKDMIEAVL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 +T ++ + I L + ++ V H D H L I Sbjct: 123 ------ATTYKTYKTQGNYN--NEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIV 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----DAYSKEVM 257 + T +G H+++ +++ KM++ + + S I+ A D Y E Sbjct: 175 QPHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGM---NSHGILIAPGDPIIDPYLPE-- 229 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V+ G + + I + + N + T +V + PL G++ NA++ Sbjct: 230 ------NQMVIRFG-ENQEIFVNSIEESKNSLRFTTNVLEQ--ALTLPLSGKYNAINAML 280 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376 AA + + + +LE LE + + R E+ S G I D Y ++ +IL+ Sbjct: 281 AAYVGKLLAVAEEDILEALEHIQLTGNRTEWKKA-SNGADILSDVYNANPTAMRLILETF 339 Query: 377 RTITSGR 383 I + Sbjct: 340 AQIVPNQ 346 >gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae NCTC 13129] gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae] Length = 477 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 51/291 (17%) Query: 120 VTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 + GT GK+S S Q +G SF IG Q N+ T + KA Sbjct: 116 IAGTHGKTSTTSMAVVALQAAGKDPSFAIG--------GQLNKAGTNAHDGTGKAFV--- 164 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + S L +++ D I ++ TN+ DH+D+ +T +AYF ++F++ Sbjct: 165 ------AEADESDASLLRYKPD-IAVV----TNIEPDHLDFFKTSEAYF----KVFDDFA 209 Query: 239 PKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQG----------KFIHLKKVCAI 285 + P ++ DD ++ + ++ + R+ GY F ++ + Sbjct: 210 ERVQPGGTLVVCLDDPHAAALGEKFKD---RMTVRGYGSPAAAQQYPDVAFTVVEHMEVG 266 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + I+V D + +PG V NA A + G + + + V R Sbjct: 267 PAGTRARITVGDDTVDVIMRIPGHHMVLNACAALTAGVTAGAELERLAAGISDFSGVRRR 326 Query: 346 FEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVF 388 FEF G S G +Y DYAH + +LK R GR++V F Sbjct: 327 FEFHGRVSGGAFHDAEVYDDYAHHPTEVTAVLKAARQQQEARGIGRVVVAF 377 >gi|170781769|ref|YP_001710101.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] gi|189028984|sp|B0RIJ4|MURC_CLAMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|169156337|emb|CAQ01485.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 476 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 17/222 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D++ + +A+ +A +R EL+ +I +DD ++ V R R Sbjct: 188 TNVDADHLDHYGSHEAFDDAFVRFASAASELV------VISSDDPGARRVTARIEG---R 238 Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V++ G I + + T++ +G +PG NA A + + + Sbjct: 239 VVTFGEDPAADIRITDIV-TDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGL 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384 G+D + L RFE RG +Y DYAH + L+ RT+ GRI Sbjct: 298 GVDPDDAIAGLAGFSGTSRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRI 356 Query: 385 IVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 I V R Q ++ +LAD IV D EDP Sbjct: 357 IAVHQPHLYSRTQMMAGDFARVYEELADHTIVLDVFGAREDP 398 >gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 51333] gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC 51333] Length = 499 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 17/194 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265 TN+ DH+D H A F F L K ++ ADDA +++V R G Sbjct: 197 TNIEPDHLD-HWGSAAAFEQAFVDFTGRLRKGGALVLCADDAGVKRLAEQVSARGGADGP 255 Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315 RV+S G+ +H ++ + QVTI+ G+ + G+ + NA Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLLNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A G +G+D + L R + VG G RIY DY H + L+ Sbjct: 316 GGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374 Query: 376 IRTITS-GRIIVVF 388 R + GR++V F Sbjct: 375 ARDLAGKGRLLVCF 388 >gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 822 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 77/372 (20%), Positives = 150/372 (40%), Gaps = 50/372 (13%) Query: 29 KINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ + +DSR + +F A+ + DGH +IP+ +G + VVS +D ++ Sbjct: 23 EVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRGVRSFVVSRL--PEDMTSCP 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +N L V + K L A R ++ +TG++GK+ V ++ Q+ Sbjct: 81 DAN--FLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKTVVKEWLYQL---------- 128 Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + P + S + ++++ P ++ L S G+ + S G + I+ Sbjct: 129 LSPEKNVTRSPRSYNSQIGVPLSVW---NLDERSEVGLFEAGI--SEPGEMEALQSVIQP 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 G FT LG H + + + K++LF K++ ++Y M A G Sbjct: 184 TIGVFTCLGDAHQENFTSYEQKCLEKLKLF-----KDAKVLVYD--------MDDARVVG 230 Query: 265 CRVLSVGYQGKFIHLKK--------VCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVY 313 C V ++G++ + + ++ ++ T+ +GK+ P E + Sbjct: 231 C-VNRSAFKGEYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLA 289 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373 N++ +C+ +G+ + + L V R E S I Y NSL++ L Sbjct: 290 NSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDYNSLDIAL 349 Query: 374 K--NIRTITSGR 383 N R +GR Sbjct: 350 DFMNRRPDCAGR 361 >gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium 2_1_46FAA] Length = 457 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 83/395 (21%), Positives = 160/395 (40%), Gaps = 69/395 (17%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +++ V+ DSR ++ ++FVAI G + DGH FIPQ + GA A S +D S Sbjct: 27 EVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVMENGA-----LCALSEKDLGDVPYS 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS----VASFVQQ---ICQRSG 141 ++V + + L A ++ +TG+ GK+S +AS ++Q + + G Sbjct: 82 ---YILVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTSTKEMIASVLEQKYSVLKTEG 138 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + +IG TI + +++ + + G+ + HRL Sbjct: 139 NFNNEIGLPLTIFNIREEHEVA-------------VLEMGINEFE--------EMHRLAK 177 Query: 202 I-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---- 256 + + TN+G H++ + AK +F + + + I+ DD V Sbjct: 178 VARPDICVITNIGFCHLENLIDRDGVLRAKTEMF-DFMRDGAQIILNGDDDKLITVQNVK 236 Query: 257 ---------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307 +R V S+G +G C +H + + LP Sbjct: 237 GIIPVFFGLTERHDYYATDVHSLGLKG------TSCILH--------LPNGTVNANIHLP 282 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 G VYNAL A + ++G+ + + + +E L V GR + T+ + +D + +N Sbjct: 283 GAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNNLIETDD---FLIIDDCYNAN 339 Query: 368 SLEMILK-NIRTITSGRIIVVFGCGGDRDQGKRPI 401 + M ++ + GR + + G G+ + ++ + Sbjct: 340 PVSMKASLDVLSNALGRKVAILGDMGELGEDEKAL 374 >gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptococcus anginosus 1_2_62CV] Length = 456 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 150/373 (40%), Gaps = 44/373 (11%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 Q+ + +V DSR I G +F + G + DGH FI A GA A + S L D+ Sbjct: 20 QFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFENGAAATL--SEKELDDY- 75 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 P ++VDN L A K ++ AVTG++GK++ + + Sbjct: 76 -------PYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTKDMLAHLL------ 122 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202 ++T ++ + I L + ++ V H D H L I Sbjct: 123 ------STTYKTYKTQGNYN--NEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIA 174 Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262 + G T +G H+++ +++ KM++ + + K+ ++ D + + N Sbjct: 175 QPKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGM--KDGTLLVVPADKIINDFLPSQLN 232 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAG 320 V+ G + I L K+ +++ ++S E D LP G++ NA++AA Sbjct: 233 ----VVRFG-PDEDIFLTKL----EERKDSLSFETNFLDNAIDLPVTGKYNATNAMIAAY 283 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379 + + G+ + + L + R E+ + G I D Y ++ +IL+ TI Sbjct: 284 VALKEGVTQDKIQKAFATLELTRNRTEWKKAKN-GADILSDVYNANPTAMRLILETFSTI 342 Query: 380 ---TSGRIIVVFG 389 GR + V Sbjct: 343 PFNEKGRKLAVLA 355 >gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter thermophilus TK-6] gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter thermophilus TK-6] gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter thermophilus TK-6] Length = 422 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 46/299 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TGT GKS+V I + + + G T T S + P LA L Sbjct: 86 VVAITGTDGKSTVTRMTYLILREHFGNVLEGGNTGTAFS-----EIVLRDPFSLA-VLEV 139 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 S QG T L + G+F N RDH+D+H + + Y ++K +F+ Sbjct: 140 SSFQGKT---------------LKTFRPCCGAFLNFARDHLDWHISLEDYLHSKYNIFKH 184 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTIS 294 +E ++Y+ +EV+ N R + K H L++ A +++ Sbjct: 185 -QQEEDFVVLYSR---QEEVV----NTPTRAKKYFFSSKDAHGFLREGRAYFMGEELFEV 236 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 + K + G NAL +A + +G+ S + + L + +P R E +G Sbjct: 237 SKLKIY-------GHHNYRNALASAMIAKLMGVPSETIRKVLYEFSGLPFRLELLG-EWE 288 Query: 355 GGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409 G +++ D A T N+LE LK ++ +I++ G GGD + I+ K+ L L Sbjct: 289 GVKVFNDSKATTVNALESALK---SMPDKSVILIAGGRDKGGDFESLYDLILQKVRLAL 344 >gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Xanthobacter autotrophicus Py2] gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Xanthobacter autotrophicus Py2] Length = 493 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + +S DSR + G F AI G DGH ++ +A+ GA VV+ +D + ++ Sbjct: 43 VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVA-----RDRADGFPAD 97 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 P+LVVD+ L+ A + I+AVTG+ GK++ Sbjct: 98 APLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTT 136 >gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Eggerthella sp. HGA1] Length = 494 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 71/380 (18%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---- 88 ++ DSR + G ++VA+ G + DGH F+ A++ GA +V +Q +R Sbjct: 30 LTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALV-----MQPLDEAVRMLAAE 84 Query: 89 -NTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ V +T ++ A S L+G+ ++A+TG++GK++ + V+ + Sbjct: 85 LGASVIEVPDTAHAVADIAREWRSHLHGR----VIALTGSTGKTTTKNLVRDVL------ 134 Query: 144 SFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197 ST+S+ A Q+N L P + A+ Q V VE G Q Sbjct: 135 ------ASTLSTVATAGNQNNELGVPKTLLAAE-------QDTQAVVVEMGMRGAGQLAD 181 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 D ++ G N+G HI+ +++ AK L L A + ADD Y+ V Sbjct: 182 LCDYVRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVR 241 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---------QVTISVEGKDFDFL----- 303 + A RV +V + G ++ Q QV + +G+ L Sbjct: 242 EHARLDARRVETVLFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGF 301 Query: 304 ------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 L G V NA A + A GI A+ + L GR E + Sbjct: 302 ADAPEEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVL-- 359 Query: 352 NSRGGRIYVDYAHTSNSLEM 371 +RGG V+ A+ +N M Sbjct: 360 RARGGFTVVNDAYNANPDSM 379 >gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 785 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 146/375 (38%), Gaps = 61/375 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 +GA+AIVVS+A I + P ++ + L S + + + +AV G+ Sbjct: 70 RGADAIVVSTA---------IPYDNPEVIAAWDLRIPKLHRSDINAALVNEYDGIAVAGS 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ S + R G+S PT + D L T + + ++ YL S+ Sbjct: 121 HGKTTTTSMIGVTLDRVGVS-----PTIIVGGEVPD--LGTNAKLGTSR---YLVSEA-- 168 Query: 184 HVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 D+ +KL TN+ DH+D++ T + A R F E + + Sbjct: 169 -----------DESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKII-AAFRQFIEQVDTD 216 Query: 242 SPAIIYADDAYSKEVMKRA----------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 A++ ++ + + + H A R ++ +G I ++H + Sbjct: 217 GTAVLCFENEILRNIARETAHKVVSYAIDHEADYRASNIETRGSVISF----SVHERGTE 272 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 V L +PG V NAL + G++ + + L + H RF+ G Sbjct: 273 MGRV-------LLNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFHGAKRRFQTKG- 324 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410 RG + DYAH + + L R R+I VF R Q R GK D A Sbjct: 325 KERGVWVVDDYAHHPTEIAVTLAAARQTNPERLICVFQPHRYSRTQLLRAEFGKCFAD-A 383 Query: 411 DIAIVTDDNPRSEDP 425 D+ ++TD E P Sbjct: 384 DLLLITDVYAAGETP 398 >gi|297170215|gb|ADI21253.1| UDP-N-acetylmuramate-alanine ligase [uncultured myxobacterium HF0010_08B07] Length = 462 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 35/280 (12%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALS 175 +AV G+ GK++ S + I ++ L PT I Q+N+ + YL Sbjct: 109 IAVAGSHGKTTTTSLIADIFVKAKLD-----PTFIIGGKILGQENKSILGTGEYLIVEAD 163 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S H++ E S TN+ DH+D++ ++ F Sbjct: 164 E-SDASFLHLNPEISV-----------------VTNIDNDHLDFYGNNLEKLDSTFLQFL 205 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVT 292 E LP AI+ D SK+V + +S G+ K FI K + K +V Sbjct: 206 ENLPFYGSAIMCIDSDRSKKVFESLSRPK---ISYGFNKKADYFIKDLKQQSSFQKFKVV 262 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---V 349 S GK+ F L G+ NA A + GI+ + E + V R E+ + Sbjct: 263 RSSTGKEITFELTLSGKHNTLNATAAFIVAQKAGINIKFIKESFKNFGGVSRRLEYKANI 322 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388 + + DY H L+ ++ +R+ S RI +VF Sbjct: 323 KIKDKSAILIDDYGHHPTELKATIEALRSTNPSKRICMVF 362 >gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 466 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N V DSR ++ G++F A G DGH F+ A GA A++VS D Sbjct: 25 VNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVIVSRG----DCLTKAGPG 80 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++V++T L A+ ++AVTG+ GK+S + +C +S + + Sbjct: 81 KSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDIL-ALCLQSRFKTLK 136 >gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271] Length = 467 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 76/380 (20%), Positives = 151/380 (39%), Gaps = 49/380 (12%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 R+ I V D+R + G +FV +VG DGH +I QA+ GA A + S+ D + Sbjct: 23 RQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSA-----DPAQA 77 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ------- 138 + ++ VD+T + L A+ ++ VTG++GK++ + Q Sbjct: 78 PSDDLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHK 137 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G + +IG T+ +D + V + + S G + Sbjct: 138 TQGNYNNEIGLPYTLLQMPEDTQ--------------------VAVIEMGMSDFGEIKQL 177 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 + + + T +G H+++ ++ AK+ + L P + ++Y + E Sbjct: 178 SEIAQPDIAAITLIGESHLEFLGSRAGIAQAKLEILYGLKP--NGVLLYPANEPLIESEM 235 Query: 259 RAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 + + S G+ + +++V + K + +V P+ G + V Sbjct: 236 PEIDQPIYLRSFGFTDHADAFAYDMVEEVDRTYFKTNLEPNVTCT-----IPVLGAYNVS 290 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NAL+A + + + + L + R E++ T+ +G R+ D Y + S+ + Sbjct: 291 NALIALSVAELLDVPLEQAIFQLANFQLTANRLEWLTTH-QGARLLNDAYNASPTSVLAV 349 Query: 373 LKNIRTITSG---RIIVVFG 389 LK++ + R I V G Sbjct: 350 LKSLAALNLAPGQRRIAVLG 369 >gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 450 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 36/242 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +FVA G++ DGH F QA GA A++ S SL +VV Sbjct: 35 DGRQAEPGGLFVAFAGDRVDGHDFAEQAGEAGAVAVLGSRPTSLS-----------TVVV 83 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-ST 152 + + + A+ + G+ + + +TG+ GK+S + + + PT + Sbjct: 84 KDVQAAVQALAAYVVGRLRDGLTVAGLTGSQGKTSTKDLLATVVSST-------APTIAA 136 Query: 153 ISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + SF +N + P + A A S + G V A GL + Sbjct: 137 VDSF--NNEIGVPVTMLRADAASRFLVLEMGARRVGDIADLTGL-------VAPDVAVVL 187 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G+ H+ Y ++QA AK L L P + A++ ADD V R+ G VL+ Sbjct: 188 NVGQSHLSYFGSRQAIAKAKGELVRGLAPGGT-AVLNADDPVV--VAMRSLTNGP-VLTF 243 Query: 271 GY 272 GY Sbjct: 244 GY 245 >gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter xylosoxidans A8] gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter xylosoxidans A8] Length = 510 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 25/161 (15%) Query: 98 TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157 R L +R Y P +L VTGT+GK++V + +Q+ + SGLS G Sbjct: 117 ARALADLAETREY--RP-RLLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNI------- 166 Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 SP LA + L ++ + V V E SS L+ + AG N+ +DH Sbjct: 167 --------SPAALAALMDALDAESLPQVWVLELSSFQLETTH--SLMADAGVVLNVTQDH 216 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 +D+H + +AY AK R LL AI+ DD Y+ +++ Sbjct: 217 LDWHGSMEAYAQAKAR----LLKMARVAIVNRDDPYTVDMV 253 >gi|160893261|ref|ZP_02074049.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50] gi|156865344|gb|EDO58775.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50] Length = 436 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 88/394 (22%), Positives = 159/394 (40%), Gaps = 67/394 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSG--------------LSSFQI-GPTSTISSFA---- 157 ++ + GT+GK S+ +FV I + +G L FQI G S FA Sbjct: 41 VVHIAGTNGKGSIFAFVGHILEDAGYVAGRYISPTIFTYLERFQINGHYMKESEFARIME 100 Query: 158 ---------QDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 ++ L P+ L A++ Y + V V +E G + + + Sbjct: 101 TVIPVCEDMEEAGLPIPTAFELETAVAFLYFVQKKVDIVLLETGMGGKNDATNVVKQPLC 160 Query: 207 GSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 ++ RDH+ + T Q KM + E + P + Y ++ M++ C Sbjct: 161 TVLASISRDHMQFLGDTLQEILEQKMGILRE----QVPCVAYP----MQDEMRQIWLKKC 212 Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDF-----DFLFPLPGEFQVYNALVAA 319 + + + + A ++ QV + G F ++ +PG +Q+YN++ A Sbjct: 213 DKMQI---------EPIMADTDQLQVIAEDLHGSRFCYKGQEYELGIPGIYQIYNSITAI 263 Query: 320 GLCIAI----GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 +C I + + + L+K + GRF+ + Y+D AH + +N Sbjct: 264 EVCNCIKKQFDLKNVSIKNGLKKT-LWEGRFQKIKDVP---LTYIDGAHNEGGWRSLREN 319 Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435 IR +GR + ++ CG D+ ++ +A + I VT DNPR+ D E I AE Sbjct: 320 IRAYFTGRPL-IYICGVLADKEYEKMVDIMAPFASFIITVTPDNPRALDKE-ILAECYRS 377 Query: 436 IPGFIEKGNRIEAIRTAIEMLNK---QDVLVVAG 466 ++ + A + E L + + V+VV G Sbjct: 378 YGKPVDTAEDVFAAQRQAETLAQELTEPVIVVFG 411 >gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens Pf-5] gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5] Length = 484 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 103/431 (23%), Positives = 173/431 (40%), Gaps = 72/431 (16%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A+ +VVSSA + + I VV L R + +AV GT Sbjct: 73 AANADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125 Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179 GK++ S + + GL +F IG +++ + +L T S +A+A S+L Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLNAAGTNAQLGT-SRYLIAEADESDASFLHL 182 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235 Q + V + D + G F L + +D+ Y A M L Sbjct: 183 QPLVAVVTNIDA--------DHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCLDDPVVR 234 Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ + P + Y +S+E RA N V G Q F L++ +++ + +S Sbjct: 235 EILPQVKRPTVTYG---FSEEADVRAIN----VRQQGMQTFFTVLRR-----DREPLDVS 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI--GIDSALVLEHLEKLHVVPGRFEFVGT- 351 V +PG V N+L A +CIA GI +++ L V RF+ G Sbjct: 283 VN---------MPGNHNVLNSL--ATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGEL 331 Query: 352 NSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 GG + + DY H + ++K +R R+++V+ R R + Sbjct: 332 PVEGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQP--HRFSRTRDLYDDFVQV 389 Query: 409 LAD--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLN 457 LAD + ++ + P E+ P ++ H I P +IE+G ++ +L Sbjct: 390 LADANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERG--VDLAPLVKPLLR 447 Query: 458 KQDVLVVAGKG 468 D+L+ G G Sbjct: 448 AGDILLCQGAG 458 >gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio sp. ND132] gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans ND132] Length = 462 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + E + EV +DSR ++ G +F I G DGH F A A+GA A+V S D Sbjct: 20 FEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALAAAKGACAVVASRMIGEID--- 76 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-----QQICQR 139 P+++V +TR L A+ ++AVTGT+GK++V + Q+ Sbjct: 77 -----APVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKTTVKEMLFAVASQKFATA 131 Query: 140 SGLSSF--QIG-PTSTISSFA 157 +F QIG PTS + + A Sbjct: 132 KNYRNFNNQIGLPTSMLKASA 152 >gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis F0359] gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis F0359] Length = 462 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 99/438 (22%), Positives = 167/438 (38%), Gaps = 97/438 (22%) Query: 68 AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 A+ +++SSA + ++ A + PI+ + +L YGK +AV G G Sbjct: 67 AQVVIISSAIRDTNEELEAARKRQLPII-----HRADALVHIMTYGK----AIAVAGAHG 117 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGV 182 K++ S + Q+ S ++ PT I + Q N + +A+A Sbjct: 118 KTTTTSMLGQVFYES-----KMDPTLVIGGEVDYLQGNSVLGKGEYVIAEA--------- 163 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 E+ L +H + TN+ DH+D++ T + A L P+ Sbjct: 164 ----DESDGTFLKEHPHIAV------VTNIDADHMDHYGTIENVIQAFKDFIHLLDPQTG 213 Query: 243 PAIIYADD----AYSKEVMKR------AHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQV 291 A++ AD+ A+ EV + A + ++GY +GK I ++ + Sbjct: 214 LAVLCADNDKIRAFLPEVKRPFVTYAIEAPADYKAKNIGYHEGKLIF-----DVYKHDEF 268 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 SVE +PG V NAL + ++ GI + L + H RF+ G Sbjct: 269 LGSVE-------LNVPGNHNVLNALATVAVSLSCGISFEDIAAALSRFHGAKRRFQTKG- 320 Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI------ 405 + G + DYAH + L R++ + R++ +F Q R ++ Sbjct: 321 HVNGIWVVDDYAHHPTEIHATLAAARSMGTHRVVCLF-------QPHRYTRTQLLAEEFS 373 Query: 406 -ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-------EKGNRIEAIRTAIEMLN 457 A AD I+TD EDP I GI G G +E I T E+L Sbjct: 374 KAFTCADKLILTDVYSAGEDP-------IPGIGGTFLTDKVKSATGQDVEYIGTKEELLE 426 Query: 458 -------KQDVLVVAGKG 468 +D+++ G G Sbjct: 427 YLRKNARPRDLILTMGAG 444 >gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 35/221 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +FVA G DGH + QA GA A++ S +L P +VV Sbjct: 32 DGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVVV 80 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++ R L A+ + + E ++ VTG+ GK+S + + LSS TI Sbjct: 81 EDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAV-----LSS----AAPTI 131 Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH---VSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +N L P L+ L + T V + A G D + L Sbjct: 132 ATKGNLNNELGVP--------LTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 N+G H+ ++ A K L L+P + AI+ ADD Sbjct: 184 LNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGT-AILNADD 223 >gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens DSM 2638] gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM 2638] Length = 470 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 23/226 (10%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAH 261 TN+ +DH+D++ Q+A + R F +P ++ DD + + M Sbjct: 179 TNVDKDHLDFYGGQEA-IDESFRKFMNSIPFYGMNVVCGDDPGVQRLLPSIKRPCMTYGL 237 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 N G R+ +G+ + C + + +V + E + PG+ V NAL A G+ Sbjct: 238 NKGNRL-----RGEILS----CEVRSLFKVYLD-EKLLGEVSLAQPGKHNVLNALGAIGV 287 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 + G+D ++L L V RFE G S+G + DY H ++ ++ ++ Sbjct: 288 SLEAGLDPKVILSGLSNFMGVGRRFEKKG-ESKGILVVDDYGHHPAEIQATIETAKSCFP 346 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425 R +VV R + G+ + AD ++T+ P SEDP Sbjct: 347 QRRLVV-AFQPHRFTRTEALFGEFCKTFEKADELLLTEIYPASEDP 391 >gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105] gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105] Length = 466 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 30/253 (11%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S V I L+ ++ PT F RL + A A + L Sbjct: 108 IAVAGTHGKTTTTSLVASI-----LAEGKLDPT-----FVIGGRLNS------AGANAKL 151 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + V + S D L+ + +IA TN+ DH++ + A F + Sbjct: 152 GTGEFMVVEADES----DASFLNLMPVIA-VITNIDADHMETYGHDFARLKQAFVEFTQR 206 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296 LP A + DD +E+M +++ G + I V A + + T+ E Sbjct: 207 LPFYGVAAVCVDDPCVREIMPFVSKT---IVTYGLSEQAQIRAVNVQACQGQMKFTVLRE 263 Query: 297 GK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNS 353 + D LPG+ V N+L A + IG+ ++ LEK + V RF+ G Sbjct: 264 DEAPLDITLNLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAK 323 Query: 354 RGGRIYV--DYAH 364 GG V DY H Sbjct: 324 EGGHFLVVDDYGH 336 >gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema denticola ATCC 35405] Length = 476 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 77/351 (21%), Positives = 133/351 (37%), Gaps = 83/351 (23%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI- 86 + + V DSR+++ +F+ + G +DGH++I A+ GA+ VV Y ++ +A + Sbjct: 36 KAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALKNGAKFFVVDFDYLDENETALLS 95 Query: 87 ---RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141 + + V N K L A K P N+ + +TG+SGK++ + I + Sbjct: 96 LCKNYDASCVAVKNNLKALQDAARYYLSKFP-NLYKIGITGSSGKTTTKEILASIYSKK- 153 Query: 142 LSSFQIGPTSTISSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 +T+S+ N T P ++ + H EA L +R Sbjct: 154 --------YNTVSTKGNLNSETGLPLSVFEVRP---------EH---EAGIFELGMNRKG 193 Query: 201 GIKLIAGSF-------TNLGRDHIDYHQTQQAYFNAKMRLFEEL---------------- 237 I IA TN+G HI T+QA K +F Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDSLGFIPECEFTDF 253 Query: 238 ---LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 +P S + +D+ ++++ +AG + Y+G+ Sbjct: 254 LKDIPHGSVFTVSDNDS---SLVQKVEDAGVLGSKIFYKGE------------------- 291 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + LFPLPG + V NAL+ L G + + LE + + GR Sbjct: 292 ------EILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGR 336 >gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus helveticus H10] Length = 455 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G +FV + G + DGH F+ AI+ GA A + + + N Sbjct: 24 ITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PKN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VDN + A K ++ +TG++GK++ + + + F + Sbjct: 77 ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++F +N + P I L + + + + G H + Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264 T +G HI++ ++ +AKM + + L +E IY D+ +E K+ A G Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241 Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R V + G++ H T ++ + F P+ G+ V NA+ A Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + G + L R E+ Sbjct: 290 VGHHFGESDEEIASSLSNFKPTANRMEW 317 >gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces hygroscopicus ATCC 53653] gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces himastatinicus ATCC 53653] Length = 486 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 26/166 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-T 163 A RL G LAVTGT+GK++ + I + +GL + +G I D L Sbjct: 113 LAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVG---NIGVSLLDIVLGE 169 Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223 TP + ++VE SS+ L H ++ +G+ NL DH+D+H + Sbjct: 170 TPYDV----------------LAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSM 211 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH-NAGCRVL 268 AY K R++E + + A D ++++++ A GCR + Sbjct: 212 AAYAADKGRIYEG---NQVACVYNAADPATEDLVRAADVEEGCRAI 254 >gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus] Length = 447 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 35/221 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D R + G +FVA G DGH + QA GA A++ S +L P +VV Sbjct: 32 DGRQAEPGGLFVAFAGEHVDGHDYAGQAGQAGAVAVLGSRPTAL-----------PTVVV 80 Query: 96 DNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153 ++ R L A+ + + E ++ VTG+ GK+S + + LSS TI Sbjct: 81 EDARTALQALAADVVARLRERLTLVGVTGSQGKTSTKDLLAAV-----LSS----AAPTI 131 Query: 154 SSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH---VSVEASSHGLDQHRLDGIKLIAGSF 209 ++ +N L P L+ L + T V + A G D + L Sbjct: 132 ATKGNLNNELGVP--------LTMLRAGAATRFLVVEMGARRIGDLAKLTDLVPLDVAVV 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 N+G H+ ++ A K L L+P + AI+ ADD Sbjct: 184 LNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGT-AILNADD 223 >gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN] gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN] Length = 826 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 40/359 (11%) Query: 27 ERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 E +I+ + +DSR + +F A+ + DGH +I + +G VV L D + Sbjct: 21 EAQISFILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGVRNFVVEQ---LPDAFS 77 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 +I L VDN+ L + I+ +TG++GK+ V ++ Q L S Sbjct: 78 SIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTMVKEWLSQ------LLS 131 Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204 F T + S+ ++++ P ++L L+ S G+ + S G + I+ Sbjct: 132 FDHNVTRSPKSY--NSQIGVPLSVWL---LNESSEIGIIEAGI--SKRGEMEALQKIIQP 184 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA 263 G T+LG H + + + K+ LF K++ A++Y DDA + + ++ Sbjct: 185 TIGVLTSLGAAHQENFSSIEEKCKEKLLLF-----KDTQALVYQMDDAIAAKCIEDFSYD 239 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--------GKDFDFLFPLPGEFQVYNA 315 G +G+ K +K T ++E GK F P + + N Sbjct: 240 GTL---LGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGK---FTLPFIDDASIQNC 293 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 + A + + +G+ + E + L V R E V G + D Y NSL++ L Sbjct: 294 ITCAAISLYLGMKPETLAERMPMLEPVAMRLE-VKEGQHGCTLINDSYNSDINSLDIAL 351 >gi|115524118|ref|YP_781029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodopseudomonas palustris BisA53] gi|115518065|gb|ABJ06049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas palustris BisA53] Length = 482 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query: 102 LSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160 + LF PE +A+TGT+GKS+ + + + +++G + G T Sbjct: 112 VELFCRERLRHAPEAPFVAITGTNGKSTTTALIAHLMRQAGYDTQMGGNIGT-------- 163 Query: 161 RLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 LS Q G HV +E SS+ +D + G N+ DHID Sbjct: 164 -----------AILSLQPPQNGRVHV-IEMSSYQIDL--TPSLDPSVGIMLNVTEDHIDR 209 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 H + + Y K RL +LP+ AII DD + +++ R AG VL V +G Sbjct: 210 HGSIENYAAVKERLVAGVLPQGC-AIIGVDDGFGRDMADRLERAGQPVLRVSVKGPL 265 >gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans PW2] gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans PW2] Length = 473 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 H +AV GT GK++ AS + R GL SF IG + + + R ++A Sbjct: 113 HGCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFLIG--GIVEGYKTNGR-NGSGTYFVA 169 Query: 172 KA------LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225 +A YL + V +VEA DH+D H A Sbjct: 170 EADESDSSFLYLEPRVVVVTNVEA-------------------------DHLD-HYGSLA 203 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 F L+ ++ + DD K++ + A + R+++ G+ + + +VC Sbjct: 204 EIENTFAQFMSLVGEQGVIVACGDD---KQLYELARSTSKRIVTYGFDARNDIVCEVCDD 260 Query: 286 HNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 Q + D + PG + NA A G+ A+G+D+A L Sbjct: 261 RCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARALSTFEG 320 Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 V RF VG + G + DY H ++ L R + I VVF Sbjct: 321 VRRRFTRVG-DVCGVTVVDDYGHHPTEIKATLAAARGLDYRHIDVVF 366 >gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A] gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A] Length = 849 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 76/356 (21%), Positives = 150/356 (42%), Gaps = 32/356 (8%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 RE ++ + +DSR + +F A+ + DGH +I + A+G VV L Sbjct: 43 REGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGVRFFVVEE---LPCEW 99 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 + S L V ++++ L A+ + I+ VTG++GK+ V ++ Q L Sbjct: 100 EKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTVVKEWLYQ------LL 153 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 SF T + S+ ++++ P ++L L+ + G+ + S G + + IK Sbjct: 154 SFSKRVTRSPRSY--NSQIGVPLSVWL---LNEQTQVGIFEAGI--SKKGEMEVLRNIIK 206 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G T+LG H + + + K+RLF ++ ++Y D K + Sbjct: 207 PTIGVLTSLGDAHQENFVSMEEKCREKLRLFTDV-----DVLVYPYD--DKLIRSCVDTL 259 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVA 318 + +G+ K + K +++ ++ + K+ + P + +Y+++ Sbjct: 260 SFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFIDDASIYDSITC 319 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 LC+ +G+ ++ + L V R E V RG + D Y NSL++ L Sbjct: 320 LALCLYLGVKKEVLKARMPLLEPVAMRLE-VKEGQRGCTLINDSYNSDINSLDIAL 374 >gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa 2192] gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa LESB58] Length = 458 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTTVKEMLASILR 125 >gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 484 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 81/387 (20%), Positives = 150/387 (38%), Gaps = 60/387 (15%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +S+F W E+ DSR I G +FV + G + DGH FI A GA + Sbjct: 43 NDVSLFEDTWLEK----AEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGATVTL--- 94 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S +N P ++VD+ A+ K ++ AVTG++GK++ + Sbjct: 95 -------SEKEVANHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 147 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194 + ++++ T +N + P + +G + +E H Sbjct: 148 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 192 Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250 D H L + + L G H+ + + + KM++ + + P +PA +D Sbjct: 193 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIED 252 Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPL 306 K+V++ A V + I K +T G+ D P+ Sbjct: 253 YLPTDKKVVRFGSGAELEVTDL--------------IERKDSLTFKANFLGQALD--LPV 296 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365 G++ NA++AA + + G+ + + + L + R E+ + G I D Y Sbjct: 297 TGKYNATNAMIAAYVGLQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNAN 355 Query: 366 SNSLEMILKNIRTITS---GRIIVVFG 389 ++++IL+ I + G+ I V Sbjct: 356 PTAMKLILETFSAIPANEGGKKIAVLA 382 >gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase [Streptococcus infantis SK1302] Length = 162 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 5 DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 D++ KD F E+I+Q + + + + + DSR Q +F V F+ Sbjct: 9 DILKKDDLFREIIDQ-GHYHYNYSDVVFDSICYDSRKAQENCLF--FVKGAAFKKEFLLS 65 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120 AIAQG V QD+ I P++VV + +K +SL A YG E ILA Sbjct: 66 AIAQGLGWYVAE-----QDYEVDI----PVIVVSDIKKAMSLIAMEFYGNPQEKLKILAF 116 Query: 121 TGTSGKSSVASFVQQI 136 TGT GK++ A F I Sbjct: 117 TGTKGKTTAAYFAYNI 132 >gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC 51756] gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC 51756] Length = 465 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 121/331 (36%), Gaps = 44/331 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+ +V+SSA + I V+ L R +AV GT G Sbjct: 63 RGADVVVISSAVPESNPEVQAAREQRIPVIRRAEMLAELMRFR-------QGIAVAGTHG 115 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S V I + L +F IG + S + RL YL + + Sbjct: 116 KTTTTSLVASILAAADLDPTFVIG--GLLKSAGTNARLGDGE--YLVAEADESDASFLYL 171 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPK 240 V A +D +D GS L R + + Q Y A + L L+P+ Sbjct: 172 APVMAVVTNIDADHMD---TYGGSLEELRRAFLQFLQRLPFYGLAVLCTDDPLVRGLIPE 228 Query: 241 -ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 SP + Y A + + H G R ++ +V V+G+ Sbjct: 229 LRSPVLGYGFSASADLQARHWHQVGGR--------------------SRFEVWRRVDGEA 268 Query: 300 FDFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356 +L +PG V NAL A G+ +G+ + + L V RFE +G + G Sbjct: 269 VHWLDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFRGVGRRFEILGDFA-GI 327 Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 I DY H LE L R + R IV+ Sbjct: 328 TIVDDYGHHPRELEATLAAARDMWPDRPIVL 358 >gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa C3719] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTTVKEMLASILR 125 >gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB] gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB] Length = 438 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 42/238 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G +Q+G I ALS Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIG----------------LPALSL 147 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 L S +V +E SS L+ +K A + N+ DH+D Y Q Y AK+R++E Sbjct: 148 LQSPAQLYV-LELSSFQLETTY--SLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYE 204 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 I+ ADDA + V A R +S G HL NKQQ +I + Sbjct: 205 ----NAQICIVNADDALTMPV----RGADTRCVSFGVDFGDYHL-------NKQQGSIWL 249 Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 K L + G+ NAL A L A+G+ A L L + + RF+ V Sbjct: 250 RVKGEKVLNTAEMKMVGQHNYTNALAALALADAVGLPRASSLAALTHFNGLAHRFQLV 307 >gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella haemolysans ATCC 10379] Length = 453 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 66/320 (20%), Positives = 135/320 (42%), Gaps = 34/320 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I ++ DSR ++ G +F+ +G DGH FI A +GA A + SL+D S Sbjct: 24 EITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESAFEKGAAA-----SLSLKD---DFVS 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 I+ V+++ + + A +A+TG++GK++ + + + +++ Sbjct: 76 ENNIIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKTTTKDIITSVLS----TKYKVH 131 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 T +F +N L P I A S + + +E + Q LD + KL+ Sbjct: 132 KTQ--GNF--NNELGVPITILAAPEDSEI-------LVLEMGADDFGQ--LDFLSKLVEP 178 Query: 208 SF---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + TN+G HI++ ++++ AK + + K+ + D+ K ++ + Sbjct: 179 DYTVITNIGESHIEFFKSREGIAKAKFEITNG-MKKDGYFVYNGDEVLIKTLVDSSEINA 237 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 Y I L+ +K +++ D + L G+ +YN + A + Sbjct: 238 TSCGENSYND--IILESYTITRDKIDFKLNI--SDEQYFTKLKGKHNLYNIMFATAIASK 293 Query: 325 IGIDSALVLEHLEKLHVVPG 344 IG+ + + + +E + G Sbjct: 294 IGLTNEEIHKAIENTVEITG 313 >gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus DPC 4571] gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G +FV + G + DGH F+ AI+ GA A + + + N Sbjct: 24 ITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VDN + A K ++ +TG++GK++ + + + F + Sbjct: 77 ITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++F +N + P I L + + + + G H + Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264 T +G HI++ ++ +AKM + + L +E IY D+ +E K+ A G Sbjct: 184 TMIGEAHIEFFGSRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241 Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R V + G++ H T ++ + F P+ G+ V NA+ A Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + G + L R E+ Sbjct: 290 VGHHFGESDEEIASSLSNFKPTANRMEW 317 >gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus carnosus subsp. carnosus TM300] Length = 449 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 123/291 (42%), Gaps = 55/291 (18%) Query: 117 ILAVTGTSGKSSVASFVQQICQRS---GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 I+AVTGT+GK++V S + + +S GL S IG + S AQ+ AK Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIGYVA--SKVAQE-----------AKP 159 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 YL +T +S G++Q+R I +I TN+ H+DYH T + Y NAK R+ Sbjct: 160 EDYL----ITELS-SFQLLGIEQYR-PHIAII----TNIYSAHLDYHGTLEEYRNAKRRI 209 Query: 234 FEE------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 ++ L+ + + D +V + V + + +I L + IH Sbjct: 210 YKNQTEDDFLICNYNQRHLIETDGLKSKVY--YFSTSQEVDGIYVKDGYIMLNGLRLIHK 267 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 V LPGE + N L A + G+ V+ L + R + Sbjct: 268 DDIV--------------LPGEHNLENILAAVLAAVLGGVSIDAVIATLTSFSGIKHRLQ 313 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQG 397 ++G+N + + Y D + +N+L + S +++ CGG DR G Sbjct: 314 YIGSN-KTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDRGNG 358 >gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa UCBPP-PA14] gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa UCBPP-PA14] gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa 39016] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 SEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTTVKEMLASILR 125 >gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c] gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c] Length = 477 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 77/334 (23%), Positives = 131/334 (39%), Gaps = 48/334 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121 G + +VVSSA IR + P L+ +++ ++ A + +H +AV Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ S + + GL PT I + A A + L + Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + VEA RL+ + + TN+ DH++ + + F + LP Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299 A++ DD EV + A A V++ G + + V + T+ + EGK Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356 LPG V NAL A+ + +G+ ++ L+ + RF +G + G Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337 Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R+ DY H LE + +R R++V F Sbjct: 338 VRLIDDYGHHPRELEAVFAAVRGGWPDKRLVVAF 371 >gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25] Length = 437 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 47/308 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL +G I A D L + +Y+ + S+ Sbjct: 110 VIAITGSNGKSTVTDLTGVMVKAAGLD---VGVGGNIGVPALD-LLEQDADLYVLELSSF 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S +KL A +F NL DH+D +Q Y AK+R+F+ Sbjct: 166 ---------QLETTS---------SLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFDH 207 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVT 292 + A++ DD +E A +++ G + L+ + + + Q+V Sbjct: 208 ----AALAVVNRDD---QETFPDAE---MPLVTFGSDNQDFGLEVDGNRTWLLDHGQRVV 257 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 S E K L G+ + NALV L A G+D L L+ + R + V N Sbjct: 258 ASDELK-------LVGKHNLSNALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN 310 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGK-RPIMGKIALDLA 410 G +V+ + +N + ++G++ ++V G G D +PI + L L Sbjct: 311 Q--GVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFSPLKPIFATLNLQLC 368 Query: 411 DIAIVTDD 418 DD Sbjct: 369 CFGADGDD 376 >gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Pseudomonas aeruginosa PAb1] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 SEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTTVKEMLASILR 125 >gi|222151664|ref|YP_002560820.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus JCSC5402] gi|254766009|sp|B9E7F6|MURC_MACCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|222120789|dbj|BAH18124.1| UDP-N-acetylmuramate-alanine ligase [Macrococcus caseolyticus JCSC5402] Length = 431 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 59/325 (18%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118 F + I +G I+ +A++ D +R++ L V FL F S+ + Sbjct: 53 FNQENIKEGM-TIIAGNAFN-DDHEEIVRAHELGLTVTRYHDFLGNFMSQY------TSV 104 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AVTG+ GK+S + + +S+ IG + + P Y A + + Sbjct: 105 AVTGSHGKTSTTGLLSHVMNGDKKTSYLIGDGTGMG---------MPGSEYFA----FEA 151 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 + H + + + TN+ DH DY + FNA F+E+ Sbjct: 152 CEYRRHFLSYSPDYAI--------------ITNIDFDHPDYFASMSDVFNA----FQEMT 193 Query: 239 PKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVT 292 K AI+ DD +++ + + Y G F KV A + K Q Sbjct: 194 KKVKKAIVACGDDENLRDIEAD--------IPIYYYG-FKEDNKVVAKNMKTTPQGTQFE 244 Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + ++G+ FD F+ P+ G+ QV NAL +C G+D+A V L V RF Sbjct: 245 VYIDGELFDTFVTPMYGDHQVLNALAVITICHLEGLDNAAVKHALSTFGGVKRRF---SE 301 Query: 352 NSRGGRIYV-DYAHTSNSLEMILKN 375 + +I + DYAH ++ L++ Sbjct: 302 KIQDEQILIDDYAHHPTEIKATLQS 326 >gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 471 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 17/159 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS----SAYSLQDFSATIRS 88 V +DSR ++ G +F I G + DGH F + + +GA A+V S +QD R Sbjct: 29 VQTDSRCVRDGELFFCISGERFDGHTFAAEVLEKGACAVVAERPPFSMDEMQD-----RQ 83 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--- 145 + P+L+V +T L A + +TGT+GK++V + + G ++ Sbjct: 84 DRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKTTVKELLAHVLSVRGATARNHL 143 Query: 146 ----QIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 QIG P S +++ + + I A + L S Sbjct: 144 NRNNQIGLPLSMLAATGDERFWVMEAGISQAADMDELGS 182 >gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 472 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 74/359 (20%), Positives = 139/359 (38%), Gaps = 52/359 (14%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + V +DSR G +FV + G++ DGH F A+ QGA A++ + N Sbjct: 26 LTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQGAAAVLAAGPLP--------GIN 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P+LVV +T K L A + ++AVTGT+GK+++ + Q+ +G Sbjct: 78 VPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLKEVLAQV--------LSLGG 129 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDGIKLI-- 205 + ++ +N++ P + ++ G++ + L I ++ Sbjct: 130 KTARNAMNHNNQIGMPRAVLGTDGDEKFWIMEAGISQ---QGDMDDLGSVLRPDIAVVLN 186 Query: 206 --AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 G LG + +H K RL + L K ++ AD ++++ A Sbjct: 187 AGTGHTEGLGEKGVAWH---------KARLL-KYLAKGGKGLVCAD---YPDLVREARAT 233 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----------VEGKDFDFLFPLPGEFQV 312 + G+ + V A Q ++ + G++FD P G + Sbjct: 234 ETDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGA 293 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371 N A + +G+D + + L + + RF V G + +D + +N L M Sbjct: 294 ENVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQV---QAGSWLLIDDTYNANPLSM 349 >gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces bingchenggensis BCW-1] Length = 479 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 50/318 (15%) Query: 64 IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 + QG E IV + + S F A + P+ A RL G LAVT Sbjct: 70 LPQGTELIVTTPGWKPSSPLFLAAAEAGVPVW-------GDVELAWRLRGADAPPWLAVT 122 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT+GK++ + I + +GL + +G I ++ L + Sbjct: 123 GTNGKTTTVRMLAAILEAAGLRTAAVGN------------------IGVSLLDVVLGDEP 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++VE SS+ L H ++ +G+ NL DH+D+H + AY K R++E Sbjct: 165 YDVLAVELSSYQL--HWAPSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE----GN 218 Query: 242 SPAIIY--ADDAYSKEVMKRAHNAGCRVL--SVGYQG-------KFIHLKKVCAIHNKQQ 290 A +Y AD A V GCR + ++G G + I + + + ++Q Sbjct: 219 QVACVYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVANRQKQ 278 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 E D + P + NAL AA L A G+ V + L P R E V Sbjct: 279 AQELAEVSDVN----PPAPHNIANALAAAALARAFGVPPTAVRDGLRAFRPDPHRVEHVA 334 Query: 351 TNSRGGRIYVDYAHTSNS 368 + G YVD + +N+ Sbjct: 335 DVA--GVAYVDDSKATNT 350 >gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii RML369-C] gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii RML369-C] Length = 450 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 34/241 (14%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N+LAVTGT+GKS+ + + I +GL G P+ AKA Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGV--------------PVLQAKA-- 148 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S G +E SS LD + K+ N+ DH+D H+ + Y AK ++F+ Sbjct: 149 --SKGGYV---LELSSFQLDLVKTFAAKI--AVLLNITPDHLDRHENMEGYITAKSKIFD 201 Query: 236 ELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + K+S II D+ Y E+ +++ H+ SV L+K +I N Sbjct: 202 R-MDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKI-----LEKGISIVNDIITD 255 Query: 293 ISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 E F + L G N + + IG++ ++E + +P R +++G Sbjct: 256 NFFEHISFKLISNKSLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLG 315 Query: 351 T 351 Sbjct: 316 N 316 >gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTAVKEMLASILR 125 >gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis TX0470] Length = 178 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 QW + + + DSR I G +FV + G + DGH FI A+A G +A A+ QD Sbjct: 37 QWPDFPLTGIEFDSRKIVKGNLFVPLQG-ENDGHRFIESAMANGCQA-----AFWGQDL- 89 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 P+L V + + A+ K N++AVTG++GK++ + Sbjct: 90 VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLI 139 >gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Actinomyces odontolyticus F0309] Length = 465 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR QAG ++VA G DGH F+ A +GA A++V + T I Sbjct: 27 VVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVD--------EAVTQI 78 Query: 93 LVVDNTRKFLSL---FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 +V D+T SL +L +++A+TG+ GK++ + QI G Sbjct: 79 VVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDG 130 >gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas macleodii str. 'Deep ecotype'] Length = 479 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 77/340 (22%), Positives = 130/340 (38%), Gaps = 43/340 (12%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126 G + +V+S +L + + V+ + F L S + ++ +TG++GK Sbjct: 72 GVDTLVLSPGLALDIEQVELAKQCGVEVIGDVELFARLNTSFKSDTPAKRVVGITGSNGK 131 Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186 ++V V + G+ S + G P+ L L S V Sbjct: 132 TTVTLLVNHLLNACGVKSIEAG--------------NVGRPV-----LEALESDADV-VV 171 Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLPKESP 243 +E SS L+ + L A + N+ DH+D H T + Y +AK R+F + + Sbjct: 172 MELSSFQLET--TSSLVLEAATVLNISDDHLDRHGTLEHYVDAKHRIFANAKSAVVWRDG 229 Query: 244 AIIYADDAYSKEVMKRAHNAGCR-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 + DDA + E A A + G V + +K I+ GK Sbjct: 230 EFVAPDDALNVEGQANAQKANQNGLLRSAIEYGLGASDSGFSIVTMLDSKH---IAFNGK 286 Query: 299 DFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRG 355 L L G V N + A G+C +G+ ++HL P R E NS Sbjct: 287 PIIALSDIHLAGMHNVLNIMAALGICCKLGVSPDQAVKHLHSFKSAPHRCVEVARVNSVR 346 Query: 356 GRIYVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGD 393 Y+D + +N I L+ I +G+++++ GGD Sbjct: 347 ---YIDDSKATNIGATIAALEGISPTIAGKLLLI--AGGD 381 >gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia endosymbiont of Ixodes scapularis] Length = 453 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 49/247 (19%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N +AVTGT+GKS+ + + I +GL G Sbjct: 105 NFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNI------------------------- 139 Query: 176 YLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFT---NLGRDHIDYHQTQQAYFN 228 GV+ + +AS G L +LD +K N+ DH+D HQ Y Sbjct: 140 -----GVSALRAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNITPDHLDRHQDMTGYIA 194 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 AK ++F+ + K+S A+I D+ Y +++ R+ + + I + + +K Sbjct: 195 AKSKIFDR-MDKKSYAVINIDNDYCRKIFMLLQQEQ-RIKLIPFSVTKILENGILVVDDK 252 Query: 289 QQVTISVEGKDFDFLFPLPGEFQ-VYN-ALVAAGLCIA--IGIDSALVLEHLEKLHVVPG 344 ++ D + Q ++N +AA +A IG++ ++E + +P Sbjct: 253 ------IKDNDISYKLSFNKNLQGLHNYENIAASYAVAKIIGVEPKKIIESISSFQSLPH 306 Query: 345 RFEFVGT 351 R +++G+ Sbjct: 307 RMQYIGS 313 >gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii OSU 85-389] gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia bellii OSU 85-389] Length = 450 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 34/241 (14%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 N+LAVTGT+GKS+ + + I +GL G P+ AKA Sbjct: 105 NLLAVTGTNGKSTTTALISHILSDNGLDYPIAGNIGV--------------PVLQAKA-- 148 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 S G +E SS LD + K+ N+ DH+D H+ + Y AK ++F+ Sbjct: 149 --SKGGYV---LELSSFQLDLVKTFAAKI--AVLLNITPDHLDRHENMEGYITAKSKIFD 201 Query: 236 ELLPKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 + K+S II D+ Y E+ +++ H+ SV L+K +I N Sbjct: 202 R-MDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKI-----LEKGISIVNDIITD 255 Query: 293 ISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 E F + L G N + + IG++ ++E + +P R +++G Sbjct: 256 NFFEHISFKLISNKSLQGIHNSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLG 315 Query: 351 T 351 Sbjct: 316 N 316 >gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V L+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 LV D L R +LA+TG+SGK++V I QR Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159 >gi|149007558|ref|ZP_01831193.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] gi|147760917|gb|EDK67887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Streptococcus pneumoniae SP18-BS74] Length = 122 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH 434 + T +G+I +V G G++ + +R G + +I + +T D+P EDP I EI Sbjct: 2 VETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYEDPMAIADEISS 61 Query: 435 GIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492 I +EK +R EAI+ A+ + N + D +++AGKG + I+ ++ D + Sbjct: 62 YINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQGKKESYPGDTAVAENY 121 Query: 493 L 493 L Sbjct: 122 L 122 >gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula stellata E-37] Length = 477 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 90/395 (22%), Positives = 154/395 (38%), Gaps = 75/395 (18%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R I G +FVA+ + DGH F+ QA+ +GA A +VS + ++ + Sbjct: 25 VSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSR------IPEGVDNSEKL 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-----SSF-- 145 L+VD+ + L + ++AVTG+ GK+S ++ + G S+ Sbjct: 78 LLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTKEMLRTVLSEQGTVHAAEKSYNN 137 Query: 146 QIGPTSTISSFAQDNRLTT-------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G T++ +D P I L+ ++ V V++ A +H Sbjct: 138 HWGVPLTLARMPKDADFAVIEIGMNHPGEI---APLARMARPHVAMVTIVAPAH------ 188 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +F NL + K +FE L P + AI D A S + Sbjct: 189 -------LAAFENL-----------EGIAREKASIFEGLEP-DGIAIYNGDLAVSGILRD 229 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYN 314 +A + +S G H ++ ++ T++ G+ + F +PG N Sbjct: 230 KAAETARKSISFGETAGTHH--RLTSVQVMDACTVAT-GRAWRVPLLFKVMVPGRHFAMN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--IYVDYAHTSNSLEMI 372 A+ + A+ +D AL + L + + PG RG R I +D +LE+I Sbjct: 287 AMGVMAVISALRLDRALAVNALAQWN--PG-------AGRGLREQIRLDPVDDRLTLELI 337 Query: 373 --LKNIRTITSGRIIVVFGCGGD------RDQGKR 399 N + G + V G RD+G+R Sbjct: 338 DDAYNSNPASLGAALEVLAAAGTHDHVGRRDKGRR 372 >gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V L+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 LV D L R +LA+TG+SGK++V I QR Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159 >gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis IP 31758] gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis IP 31758] Length = 438 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++A+TG++GKS+V + V ++ + +G S IG ++ QDN+LT Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232 L S Q T S+ AS A + N+ DH D Y Q Y AK+R Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++E ++ ADDA + V A R +S G HL NKQQ Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I + + L L G NAL A L A+GI A L+ L +P RF+ Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306 Query: 349 V 349 V Sbjct: 307 V 307 >gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PA7] Length = 458 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 17/138 (12%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 ++L L LI + ++F + VS+DSR I G +F+A+ G + DGH ++ Sbjct: 5 LRLSQLTVALDARLIGEDAVF---------SAVSTDSRAIGPGQLFIALSGPRFDGHDYL 55 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 + A+GA A +V + + P L+V +TR L + K + A+ Sbjct: 56 AEVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAM 107 Query: 121 TGTSGKSSVASFVQQICQ 138 TG+SGK++V + I + Sbjct: 108 TGSSGKTTVKEMLASILR 125 >gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus DSM 9941] gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus DSM 9941] Length = 447 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 26/193 (13%) Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 A TN+ DH D++ + + R F LP E ++ ADD + + A A C Sbjct: 170 AAVITNIEYDHPDFYASLEEVVETFAR-FVAGLPPEGHLVLCADDPRCRRL---AELAPC 225 Query: 266 RVLSVGYQGKFIHLKKVC--------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 V + G G + + + + +V++ V G+ V N+L Sbjct: 226 PVTTYGLSGGELRARVLSPGSYLLFEGARKRGEVSLGVYGR-----------HNVLNSLA 274 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 AAG+ +G D L V RF+ G S G R+ DYAH + IL R Sbjct: 275 AAGIARWLGHDPLEAARTLGSFGGVRRRFQLKGERS-GVRVVDDYAHHPTEIMAILDVAR 333 Query: 378 TITS--GRIIVVF 388 + GRII VF Sbjct: 334 ATAAPEGRIIAVF 346 >gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC 19624] gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC 19624] Length = 477 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 46/287 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V + +GL +F IG ++S + RL Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARL-------------- 151 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFNAKM 231 QG + VEA D L+ + +++ TN+ DH+ D+ + +QA+ + Sbjct: 152 --GQG-EFIVVEADES--DASFLNLLPVLS-VVTNIDADHMETYGHDFGRLKQAFVD--- 202 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IH 286 F +P AI+ DD +EV A C + S G+ Q + ++++ V +H Sbjct: 203 --FLHRMPFYGTAILCTDDPAVREV---ADTVNCPITSYGFGDNAQVRAVNVRAVGGQMH 257 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 Q V D + + L G V NAL A + + I +L+ L + V RF Sbjct: 258 FTAQRRNGVVLPDLEVVLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRF 317 Query: 347 EFVG-TNSRGGRIYV---DYAHTSNSLEMILKNIRTITSG-RIIVVF 388 + G ++GG + DY H + L R G R+++ F Sbjct: 318 QRYGEIPAKGGGTFTLIDDYGHHPVEMAATLSAARGAFPGQRLVLAF 364 >gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666] gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666] Length = 467 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 108/257 (42%), Gaps = 35/257 (13%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V + +GL +F IG ++S + RL Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGLGD---------- 155 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++ VEA D L+ + ++A TN+ DH++ + A F Sbjct: 156 -------YIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFANLKKAFVDFLH 205 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291 +P AI+ DD +E++ + C + S G+ Q + ++++ V A +H Q Sbjct: 206 RMPFYGTAILCTDDPAVREIVPQVS---CPITSYGFGEDAQVRAVNVRPVGAQMHFTAQR 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350 V D + + L GE V NAL A + + + + V + L + V RF+ G Sbjct: 263 RNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSYGD 322 Query: 351 TNSRGG---RIYVDYAH 364 ++GG + DY H Sbjct: 323 VPAKGGGHFTVIEDYGH 339 >gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis ATCC 14019] gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Gardnerella vaginalis ATCC 14019] Length = 597 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 120/546 (21%), Positives = 204/546 (37%), Gaps = 100/546 (18%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++ N ++ DSR I+ + I GN + +L A G V +Y+ D++ Sbjct: 74 KKTYNHITYDSRDIKKNTLLF-IKGNFKPEYL--KDADKNGLTTYVAEQSYA--DYT--- 125 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV---ASFVQQICQRSGLS 143 N L+V + RK +SL +S +G +P+ L V G +G A F I L+ Sbjct: 126 --NAVGLIVTDVRKAMSLLSSEFFG-NPQERLRVIGITGTKGKTTTAYFTHAI-----LN 177 Query: 144 SFQIGPTSTISSFAQ--------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 G + SS ++ LTTP + + +S G+ ++ +E SS Sbjct: 178 EHSEGKAALFSSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYK 237 Query: 196 QHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 R+ G+ +F N+ DHI H T + Y K +++ I+ AD A++ Sbjct: 238 VERVYGLHFNVAAFLNISPDHISPIEHPTFEDYLYCK----RQIVKNTDALILNADCAHA 293 Query: 254 KEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIH---------------------- 286 +++ A N V + G+ I + C+ H Sbjct: 294 DLILQDAQNEYVDVTTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVA 353 Query: 287 ---------------------NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 NK+Q + D F + G+F NA A + A+ Sbjct: 354 MPVSSDAQEHYVAILDNESKKNKKQFVPNYTTID-KFNLKIAGDFNYENATAAIAIANAL 412 Query: 326 GIDSAL---VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 GI+ L +E + + GR E VDYAH S + ++ + Sbjct: 413 GINENTDQKALHAIENVQ-ISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGN 471 Query: 383 ---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438 RI +V G GD+ +R + + A D + + T ++ ED I + + Sbjct: 472 NDLRITLVTGSTGDKAVDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNP 531 Query: 439 FIEKG---NRIEAIRTAIEML-------NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488 +E NR EAI ++E N+ ++++ GKG E V N D I Sbjct: 532 NVESRIIINRAEAIEYSVEEARKDARENNRLNIILAIGKGDERWIKVHNKHVPYEGDSFI 591 Query: 489 IREILG 494 I+ + Sbjct: 592 IKRLFS 597 >gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9] gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter hongkongensis HLHK9] Length = 856 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/314 (21%), Positives = 129/314 (41%), Gaps = 34/314 (10%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 ++FA G+ P ++AV+GT+GK++ + ++G ++G T T + ++ Sbjct: 461 NMFAGDDNGRIP--VVAVSGTNGKTTTVRLSAHLIAQTGK---RMGMTVTDGVYVNGRQI 515 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQ 221 + A + L V E + G+ + L + TN+G DH+ + Sbjct: 516 DSGDCSGPRSARNVLMHPDVDAAVFETARGGMLREGLGFDRCDVAVVTNVGEGDHLGLNY 575 Query: 222 TQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---- 276 Y ++ + + ++ + SP+ + +A V + A + V + G Sbjct: 576 I---YTLDELAVLKSIVVQNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHPVIN 632 Query: 277 ---IHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPG----EFQVYNALVAAGLCIA 324 ++V + + Q + EG D F PL FQ+ N++ A G A Sbjct: 633 AHRAQGRRVIYVEDGQ--IVCAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAWA 690 Query: 325 IGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 +GI +A + + PGRF + RG + DY H ++++ +++ + T+ Sbjct: 691 LGIAQEQIAAGLASFVSDAATAPGRFNLF--DYRGATLIADYGHNPDAMQALVQAVETLP 748 Query: 381 SGRIIVVFGCGGDR 394 R IVV GDR Sbjct: 749 GQRRIVVISGAGDR 762 >gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573] gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603] gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603] gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573] Length = 486 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 50/287 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +AV GT GK++ + V QI +GL +F G + S + RL + S I +A+A Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231 S+L Q + + + +D + G F NL + ID+ Y A + Sbjct: 182 DASFLHLQPMVTIVTNIEADHMDTY--------GGDFENLKQTFIDFLHNLPFYGQAILC 233 Query: 232 ---RLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 + EL+P+ S +I +A+DA + R G QGKF ++K A Sbjct: 234 IDDPVIRELIPRVSRQVITYGFAEDADVRIENYRQQ---------GQQGKFTVVRKGKA- 283 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + D +PG NA A + I +L + R Sbjct: 284 -------------NLDITLNIPGRHNALNASAAIAVATEDDISDEAILRAMANTQGTGRR 330 Query: 346 FEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 F+ +G G + + DY H +++ +K R R++++F Sbjct: 331 FDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIF 377 >gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pseudotuberculosis YPIII] gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pseudotuberculosis YPIII] Length = 438 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++A+TG++GKS+V + V ++ + +G S IG ++ QDN+LT Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIG-VPALTLLKQDNQLTV--------- 156 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232 L S Q T S+ AS A + N+ DH D Y Q Y AK+R Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++E ++ ADDA + V A R +S G HL NKQQ Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I + + L L G NAL A L A+GI A L+ L +P RF+ Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306 Query: 349 V 349 V Sbjct: 307 V 307 >gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Burkholderia thailandensis MSMB43] Length = 269 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 27/245 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR G +FVA+ G + D H F+ +GA A +VS + + N P Sbjct: 29 VSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSRSPA--------EWNLPA 80 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 L V +TR L A + ++AVTG++GK++V + I + +G + Sbjct: 81 LKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAAA------VGEPAR 134 Query: 153 ISSFAQ-DNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +++ +N + P + A L+ G+ H + L + + L+ Sbjct: 135 LATAGNFNNDVGLPLTLLRLTAAHRLAVIELGMNH---PGETDTLAKIAAPTVALV---- 187 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 N R+H ++ T +A + L P + A+ ADDAY+ + R G R++ Sbjct: 188 NNAQREHQEFMATVEAVALEHAAVIHALGP-DGVAVFPADDAYAG--IWRVAATGNRIVD 244 Query: 270 VGYQG 274 G Sbjct: 245 FALHG 249 >gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 455 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I V+ DSR I G +F+ I G + DGH F+ AI GA A + + Sbjct: 21 ETVITSVAFDSRKISQGALFIPIKGER-DGHDFVGSAIEAGASATLWEAG---------- 69 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +L V +T K + A K ++++TG++GK++ V + + Sbjct: 70 NPNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAK--- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200 F + T ++F +N + P I K ++ + V + ++ + H L Q Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLARP 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +I T +G HI++ ++ +AKM + + L +E IY D + +RA Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230 Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G+ IH + +H+ + G D +F P+ G V NA+ A Sbjct: 231 AKLPQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287 >gi|332670125|ref|YP_004453133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi ATCC 484] gi|332339163|gb|AEE45746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi ATCC 484] Length = 476 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 21/122 (17%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P LAVTGT+GK++ ++ + + +G + +G T P+ LA Sbjct: 104 PAPWLAVTGTNGKTTTVGMLESVLRAAGRDAVAVGNVGT--------------PVVLAA- 148 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 + ++VE SS L H + A + N+ DH+D+H + +AY AK R+ Sbjct: 149 ----TDPARDVLAVELSSFQL--HHTSSMSAQAAAVLNVAPDHLDWHGSMEAYAAAKGRV 202 Query: 234 FE 235 FE Sbjct: 203 FE 204 >gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [delta proteobacterium MLMS-1] Length = 496 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+DSR I+AG +FVA+ G D F+ +A+A+GA +V L+ + Sbjct: 59 ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLV------LEQPPVEPVPVPVV 112 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 LV D L R +LA+TG+SGK++V I QR Sbjct: 113 LVPDTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQR 159 >gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12] Length = 438 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 38/236 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G++ +G I AL Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVN---VGVGGNIG----------------LPALML 147 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 L + +V +E SS L+ ++ + + N+ DH+D Y Q Y AK+R++E Sbjct: 148 LDDECELYV-LELSSFQLET--TSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYE 204 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ ADDA + + A R +S G HL H + + + V Sbjct: 205 ----NAKVCVVNADDALTMPI----RGADERCVSFGVNMGDYHLN-----HQQGETWLRV 251 Query: 296 EGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +G+ + L G+ NAL L A G+ A L+ L +P RFE V Sbjct: 252 KGEKVLNVKEMKLSGQHNYTNALARVALADAAGLPRASSLKALTTFTGLPHRFEVV 307 >gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase [Sinorhizobium fredii NGR234] Length = 477 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%) Query: 13 ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72 +L+ ++ P+ I +S DSR I G F AI G++ DGH + A+A GA +V Sbjct: 9 DLLAAMNGRPVGNLPEGIIGISIDSRTIAKGEAFFAIRGDRVDGHDYAGIALANGASLLV 68 Query: 73 VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132 VS A R P++VVD+ + + + ++AVTG+ GK++ Sbjct: 69 VSEG----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKTTTKEM 124 Query: 133 VQQICQRSG 141 ++ + G Sbjct: 125 LRHVLSPLG 133 >gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC 17982] Length = 465 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V +DSR QAG ++VA G DGH F+ A +GA A++V + P Sbjct: 27 VVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEH---------EVDEAVPQ 77 Query: 93 LVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 +VV+++ + L A +L +++A+TG+ GK++ + QI G Sbjct: 78 IVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSEDG 130 >gi|254303964|ref|ZP_04971322.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324156|gb|EDK89406.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 468 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268 TN+ DH+D H N K E + + AII D KE + R Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFICHTQKEAIICMDCENLKEAVTRLPEGKSVTTY 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326 S+ + I K + I +++ + K+ +F +PGE + N+L L + G Sbjct: 238 SIKDENASIFAKNI-RIEDRKTIFDFYVNKELIGEFSLNIPGEHNISNSLPVIYLALKFG 296 Query: 327 IDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + E L K R++ + G ++ RI DYAH ++ LK I+ Sbjct: 297 VSKEEIQEALSKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIKATLKAIK 356 Query: 378 TITSGRIIVVF 388 +I + R++ +F Sbjct: 357 SIDTSRLVAIF 367 >gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697] gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA] Length = 828 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 44/365 (12%) Query: 28 RKINEVS-------SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78 R+I E+S +DSR + +F A+ + DG +I A+G VVS Sbjct: 15 RRIGELSATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYARGVRNFVVSEE-G 73 Query: 79 LQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 L++ A + S P +LVV + K L A + + ++ +TG++GK+ V ++ Q Sbjct: 74 LKEAEA-LGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSNGKTVVKEWLHQ 132 Query: 136 ICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + P I S + ++++ P ++ + L+ + S G Sbjct: 133 L----------LSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAI-----LEAGISEPG 177 Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDA 251 + + IK G TN+G H Q+ +F+ + + E+L L K+ +IY DD Sbjct: 178 EMRALQNIIKPTIGILTNIGGAH------QENFFSLQEKCMEKLALFKDCDVVIYNGDDE 231 Query: 252 Y-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + S V K +A S + +++ KV N ++ D F P + Sbjct: 232 FISNCVSKSIFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDA 291 Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--S 368 + N+L C+ + + + + E + KL V R E + G + ++ ++ S+ S Sbjct: 292 SIENSLNCLAACLYLMLPAGQITERMAKLEPVAMRLEV--KEGKNGCLLINDSYNSDLGS 349 Query: 369 LEMIL 373 L++ L Sbjct: 350 LDIAL 354 >gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 26/166 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +GL + +G Sbjct: 104 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIG------------- 150 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L + ++VE SS+ L H +++ + + NL DH+D+H + + Sbjct: 151 ---VSLLDAV--LGEETYDVLAVELSSYQL--HWAPSVRVHSAAVLNLAPDHLDWHGSME 203 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL 268 AY K R+++ A +Y D ++++++ A GCR + Sbjct: 204 AYAADKGRIYQ----GNQVACVYNVADKVTEDLVREADVEEGCRAI 245 >gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 431 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 41/253 (16%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FAS Y ++I+A+TGT+GK+++ + V +I + G S+ +G I D + Sbjct: 83 FASYFY--KTKDIVAITGTNGKTTITTLVNEILNKVG-KSYAVG---NIGVGVMD--VID 134 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 P ++ EASS L +D TN+ DH+D+H+T + Sbjct: 135 YDPKFIV---------------CEASSFQL--AYIDKFHPHVAVITNITSDHLDWHKTVE 177 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL------SVGYQGKFIH 278 Y AK +++ L ++ I+ A Y K + NAG + +G G F Sbjct: 178 NYRKAKENIYKN-LEEDDFLILGASCDYVKTI-----NAGVKNTFYYSYDDLGRPGLFTK 231 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 +++ H + ++ D +F + G + NA+ A ++G+D ++++ ++ Sbjct: 232 DEEIIFRHFDGTLENIMKVSD---VF-IKGRHNIENAMAAILSAYSLGVDLEIIVDTIKN 287 Query: 339 LHVVPGRFEFVGT 351 V R EFV T Sbjct: 288 FKGVEHRIEFVRT 300 >gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Length = 449 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 44/332 (13%) Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A + A+ +V S+AY ++ R+ + V + +FL S+ G +AV G Sbjct: 58 ANVEKADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------IAVAG 110 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSS 179 T GK++ + + +SG I PT + S N + +LA++ Y Sbjct: 111 THGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEY--- 162 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 H L+ LI TN+ DH DY + A + +++ P Sbjct: 163 ----------RRHFLN---YSPEYLI---ITNIEFDHPDYFKDLDDVVCAFSEIAQKI-P 205 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298 I+ +D ++A A +++ G + H++ +TI G Sbjct: 206 PHGRIFIWHEDP-----QRKAIQAQSPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGT 260 Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F + G+ + NAL + LC+ IG+ + VLE L + RFE +G N+ G Sbjct: 261 VLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GAL 319 Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 I DYAH + L+ R + RI VF Sbjct: 320 IVDDYAHHPTEIRSTLEGARLSFPDRRIRAVF 351 >gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 463 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 13/223 (5%) Query: 220 HQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKR-AHNAGCRVLSVG-YQGK 275 H A + FE K P ++ + A ++E+ +R A G +++VG + Sbjct: 190 HHANYASMDEIYESFEAFTAKIRPGGTLVVGEHAGARELARRVADREGLDIVTVGESEDS 249 Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + K+ K +VT++++G + F +PG +NA A +GID A + + Sbjct: 250 DARILKIVPNGMKSEVTVALDGVEHTFTVSVPGRHYAHNAAAALAAGARVGIDPAELAQA 309 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---G 391 L V R + G ++G ++ YAH + L+ +R + R++VVF Sbjct: 310 LTAYTGVGRRLQLKG-EAKGVQVIDSYAHHPTEMTADLEAMRGAAGASRLLVVFQPHLFS 368 Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433 ++ GK MG AL LAD ++V D P EDP I +E+I Sbjct: 369 RTQELGKE--MGD-ALALADASVVLDIYPAREDPIPGITSELI 408 >gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 43/328 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G +FV + G + DGH F+ AI+ GA A + + + N Sbjct: 24 ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VD+ + A K ++ +TG++GK++ V + + F + Sbjct: 77 IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++F +N + P I L + + + + G H + Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA----G 264 T +G HI++ T+ +AKM + + L +E IY D+ +E K+ A G Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEITDFL--REDGEFIYNGDEPLLQERAKKLDQAKATFG 241 Query: 265 CR----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 R V + G++ H T ++ + F P+ G+ V NA+ A Sbjct: 242 FRDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAIS 289 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF 348 + G + L R E+ Sbjct: 290 VGRHFGESDEEIASSLSNFKPTANRMEW 317 >gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum DSM 5476] gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum DSM 5476] Length = 457 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 78/340 (22%), Positives = 139/340 (40%), Gaps = 45/340 (13%) Query: 58 LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115 L IP + AE I L ++A I + P L+ ++ L G E Sbjct: 56 LGIPVTLGHRAENI---KGADLIVYTAAIMEDNPELIAAKQSGIPTIERCVLLGLITERY 112 Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAK 172 + + V+GT GK++ S + QI +G + G +I + + + S + + + Sbjct: 113 SDCICVSGTHGKTTTTSMLTQILLDAGKDPSAVIGGKLKSIEGYGR----SGSSEVMVCE 168 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 A ++ + H+S + + N+ RDH+DY +T + N K+ Sbjct: 169 ACEFVDT--FLHLSPDIAV-----------------VLNIDRDHMDYFKTME---NLKLS 206 Query: 233 LFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGY--QGKFI--HLKKVCAIHN 287 FE+ K + I+Y DDA S EV R R ++ G+ Q + +++ V +H Sbjct: 207 -FEKFCRKATKCILYNGDDANSAEVAGRVDQ---RKVTFGFSDQNDYYPANVQHVDGLHT 262 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + E LF +PG+ + NA A + G+ + E L RFE Sbjct: 263 TFDLMHKGERLTSLNLF-VPGDHNILNATAACAAALETGVRPEQLAEGLGNFKGAGRRFE 321 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 +G G I DYAH +++ L+ +++ ++ V Sbjct: 322 LLG-KINGITIVDDYAHHPAEIKVTLQAAQSLNFNKVWAV 360 >gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51] gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense DCB-2] gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense DCB-2] Length = 435 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 44/332 (13%) Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A + A+ +V S+AY ++ R+ + V + +FL S+ G +AV G Sbjct: 44 ANVEKADIVVASAAYG-ENHEEIARARELNIPVYSYPQFLGRLMSKKRG------IAVAG 96 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSS 179 T GK++ + + +SG I PT + S N + +LA++ Y Sbjct: 97 THGKTTTTAMIGLALLQSG-----IDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEY--- 148 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 H L+ LI TN+ DH DY + A + +++ P Sbjct: 149 ----------RRHFLN---YSPEYLI---ITNIEFDHPDYFKDLDDVVCAFSEIAQKI-P 191 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298 I+ +D ++A A +++ G + H++ +TI G Sbjct: 192 PHGRIFIWHEDP-----QRKAIQAQSPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGT 246 Query: 299 DF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F + G+ + NAL + LC+ IG+ + VLE L + RFE +G N+ G Sbjct: 247 VLGEFHLHVSGKHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GAL 305 Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 I DYAH + L+ R + RI VF Sbjct: 306 IVDDYAHHPTEIRSTLEGARLSFPDRRIRAVF 337 >gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-- D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] gi|46914748|emb|CAG21525.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Photobacterium profundum SS9] Length = 468 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + VS+D+R + A +F+A+ G+ D H F A+ G A++VS ++ Sbjct: 24 VANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMDNGVAALLVSRHLPVE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSG 141 P LVV +T + L L + L H +A+TG+ GK++V V +I + G Sbjct: 75 LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGSCGKTTVKEMVAEILSQKG 130 >gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 265 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 25/249 (10%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIR 87 IN V+ +S+ + A IF AI G DGH F+ + I + ++ IVV + + + + I+ Sbjct: 23 INNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVIVVKNNFKVPKNNLHKFIK 82 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 +PI ++N K+ L + GK + +TG+ GK+++ + ++ G + Sbjct: 83 VRSPIRSLENFAKYQRLTSQ---GK----FVGITGSFGKTTLKYMLSFFLEQYGKT---- 131 Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206 S+ SF +N P L+ + + +SQ +SS +D +L I + Sbjct: 132 --FSSPKSF--NNHFGLP----LSLSNTPKNSQFNIFELGMSSSREID--KLSQILRPDI 181 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 G TN+G H+ + +A AK + + + ++ DD Y + K A+N + Sbjct: 182 GVITNIGPAHLKNFKNLKAVCLAKAEIMNH-IQENGYIVLNKDDFYFNTLFKIANNKKLK 240 Query: 267 VLSVGYQGK 275 +++ K Sbjct: 241 IITFSKSKK 249 >gi|300712111|ref|YP_003737925.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3] gi|299125794|gb|ADJ16133.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3] Length = 807 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P E P + A+ E + VL+VG +G H + +VT++ G Sbjct: 188 PAEGPLVTAAE----GEALSAVREQAGEVLTVGSKGDVRVAYGGRTNHVESRVTLAGPGW 243 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTNSRGGR 357 D + PL G +Q NA +AA L + S LE L H PGRFE +G Sbjct: 244 DVEARIPLLGAYQARNAGIAAALARRVTSVSGTELERGLRNAH-WPGRFEVMGEEP---L 299 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 +D AH + E + + + + +V G ++D R + AL D + T Sbjct: 300 TVLDGAHNPGACEALAETLAEFEYDDLFLVVGAMHEKDH--RGMAA--ALPAPDHVVCTQ 355 Query: 418 -DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 D R+ED E + R G+ +G A+ A+ +D ++VAG Sbjct: 356 PDLDRAEDREVLARVFAERGVEDVKTRGAVSGALSRALSEAGPEDCVLVAG 406 >gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus DSM 14838] Length = 833 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/333 (21%), Positives = 137/333 (41%), Gaps = 38/333 (11%) Query: 30 INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS-SAYSLQDFSATI 86 I+ + +DSR + +F A+ + DG +IP ++G VVS AY + Sbjct: 24 IDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRGVRNFVVSKEAYKWVESGQLA 83 Query: 87 RSNTPIL-----VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 SN+ +L VV N K L A + + ++ +TG++GK+ V ++ Q+ Sbjct: 84 MSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIGITGSNGKTIVKEWLHQL----- 138 Query: 142 LSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQH 197 + P I S + ++++ P ++ S L+ G++ + + + Sbjct: 139 -----LSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAGISEMGEMRALQNI--- 190 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAIIY-ADDAY-SK 254 IK G TN+G H Q+ +F+ + + E+L L K +IY DD + S Sbjct: 191 ----IKPTIGILTNIGGAH------QENFFSLQEKCMEKLSLFKNCDVVIYNGDDEFISN 240 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 V K +A S + + + KV + ++ D F+ P + + N Sbjct: 241 CVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDNTFILPFIDDASIEN 300 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 +L C+ + + + + E + L V R E Sbjct: 301 SLNCLAACLYLMLPAEKITERMATLEPVAMRLE 333 >gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio africanus str. Walvis Bay] gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio africanus str. Walvis Bay] Length = 435 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 29/174 (16%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P+ A G + +VVS ++ + + P V + + S F S E ILAV Sbjct: 68 PEQFA-GVDLVVVSPGVPVRKMGHLL-GDMPERKVVSELELASWFVS-------EPILAV 118 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 TGT+GK++ S I + SG F G + TP YL L + Sbjct: 119 TGTNGKTTTVSLCGHILRESGKRVFVGG------------NIGTPLSEYL------LGGE 160 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 + +E SS L R K G N +H+DYH++ + Y AK++LF Sbjct: 161 RADILVLEVSSFQLQNCRT--FKPHVGVLLNFSANHLDYHESMEEYLEAKLKLF 212 >gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 460 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + I+ VS+D+R+I + +F+A+ G + D H F A GA+A++VS + Sbjct: 21 DTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAKALLVSKRLPV------- 73 Query: 87 RSNTPILVVDNTRKFLSLFASRL----YGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P LVV +TR L + L KH LA+TG+ GK++V I G Sbjct: 74 --DLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGSCGKTTVKEISAAILATKG 130 >gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 455 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 41/300 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E I V+ DSR I G +FV I G + DGH F+ AI GA A + + Sbjct: 21 ETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGASATLWEAG---------- 69 Query: 87 RSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 N P +L V +T K + A K ++++TG++GK++ V + + Sbjct: 70 NPNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMVAAVLAK--- 126 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS--HGLDQHRLD 200 F + T ++F +N + P I K ++ + V + ++ + H L Q Sbjct: 127 -RFNVYKTQ--ANF--NNEIGVPMTILEMKPITEIL---VLEMGMDRAGQLHELSQLVRP 178 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 + +I T +G HI++ ++ +AKM + + L +E IY D + +RA Sbjct: 179 DVAVI----TMIGEAHIEFFGSRDKIADAKMEITDFL--QEDGEFIYNGD--EPLLAERA 230 Query: 261 HNAGCRVLSVGY-QGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 + G+ IH + +H+ + G D +F P+ G V NA+ A Sbjct: 231 AKLPQDKSTFGFADSDSIHASDLRSTMHHS---FFKINGTDREFSIPMIGRHNVANAMAA 287 >gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145] gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145] Length = 482 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 78/331 (23%), Positives = 134/331 (40%), Gaps = 42/331 (12%) Query: 66 QGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 +GA IVVS+A + + I + P++ + + + +H +AV GT Sbjct: 80 KGANVIVVSTAIDKENPEIKTAIENRIPVV------RRAEMLGELMRYRHG---IAVAGT 130 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ S + C L+ + PT I NR + + A Y+ ++ Sbjct: 131 HGKTTTTSLIT--CM---LAEENMDPTYVIGGLL--NRTGMNAAL---GASRYIVAE--- 177 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + E+ + L ++ +A TN+ DH+D + F + LP Sbjct: 178 --ADESDASFLH------LEPMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGL 229 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303 A++ DDA +E+M R +L+ G+ + ++ V + Q +V K+ + L Sbjct: 230 AVVCGDDANIREIMPRIARP---LLTYGFN-EDNDIRAVDVDQDGMQTHFTVLRKEREPL 285 Query: 304 ---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIY 359 PG V NAL A G+ G+ A + LE V RFE G + GG + Sbjct: 286 RVTVNQPGLHNVLNALAAIGIATDEGVSDASICRALEGFSGVGRRFEVQGEFAIEGGDVK 345 Query: 360 V--DYAHTSNSLEMILKNIRTITSGRIIVVF 388 + DY H +E +K R R +V+ Sbjct: 346 LVDDYGHHPKEVEATIKAARQSHPDRRLVMM 376 >gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis KIM 10] gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Antiqua] gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Nepal516] gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Pestoides F] gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CA88-4125] gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Angola] gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis FV-1] gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis CO92] gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Pestoides A] gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Nepal516] gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis KIM D27] gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Z176003] gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM 10] gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Microtus str. 91001] gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Nepal516] gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Antiqua] gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CO92] gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Pestoides F] gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis CA88-4125] gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis Angola] gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. IP275] gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Nepal516] gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. India 195] gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis Pestoides A] gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis D106004] gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis D182038] gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis KIM D27] gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis Z176003] gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 438 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 100/241 (41%), Gaps = 48/241 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 ++A+TG++GKS+V + V ++ + +G S IG ++ QDN+LT Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGGGGNIG-VPALTLLKQDNQLTV--------- 156 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMR 232 L S Q T S+ AS A + N+ DH D Y Q Y AK+R Sbjct: 157 LELSSFQLETTHSLRAS---------------AATILNVTEDHTDRYPLGLQQYRAAKLR 201 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292 ++E ++ ADDA + V A R +S G HL NKQQ Sbjct: 202 VYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL-------NKQQGE 246 Query: 293 ISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 I + + L L G NAL A L A+GI A L+ L +P RF+ Sbjct: 247 IWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQL 306 Query: 349 V 349 V Sbjct: 307 V 307 >gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum SL003B-26A1] gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum SL003B-26A1] Length = 466 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 25/151 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TGT+GKS+ + + + + GL Q+G + TP L Sbjct: 116 LIAITGTNGKSTTTALIAHLLKTLGLD-VQMG-----------GNIGTP-------VLDL 156 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 Q H VE SS+ +D I+ G NL DH+D H T + Y K E Sbjct: 157 APLQPGRHYVVECSSYQIDLA--PSIEPTVGILMNLSPDHLDRHGTMENYAAIK----ER 210 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 L+ A++ DD +S+ + R AG RV Sbjct: 211 LVAGSRTAVVGVDDRFSEAIADRIARAGVRV 241 >gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC 49176] Length = 276 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 26/195 (13%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+G H+++ +++ AK +F+ L P I+ DD +++ + G + + Sbjct: 3 TNIGLCHLEFLKSRDGILKAKTEIFDFLKPT-GHIILNVDD---DKLVTVENVKGIQPMF 58 Query: 270 VGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 G + K V A K + I E +F L P+PG VYNAL Sbjct: 59 FGIENK----NGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGT---- 110 Query: 324 AIGIDSALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRT 378 A+G+ +L LE +E L V GRF + T G VD + +N + M ++ T Sbjct: 111 AVGLTYSLSLEEIKAGIESLQPVSGRFHIIDT---GKYTVVDDCYNANPVSMKASLDVLT 167 Query: 379 ITSGRIIVVFGCGGD 393 GR + + G G+ Sbjct: 168 DALGRKVAILGDMGE 182 >gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase [Pseudomonas fluorescens SBW25] Length = 456 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 11 FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 F EL LS + + + VS DSR+I+ G +FVA+ G + DGH ++ A+GA Sbjct: 7 FNELAQALSARVLS-SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDVAAKGAVG 65 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 +V + S P L+V +TR L + + A+TG+SGK++V Sbjct: 66 ALVQREVA--------DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVK 117 Query: 131 SFVQQICQRSG 141 + + + G Sbjct: 118 ELLAGVLRTRG 128 >gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp. ND132] gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio desulfuricans ND132] Length = 434 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 35/193 (18%) Query: 49 IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108 +VG E GH A+ IV+S ++ A + P V + +F S F Sbjct: 66 VVGPHEKGHF-------ADADVIVLSPGVPVRKL-APVLEGVPARNVVSELEFASWFIE- 116 Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 ILAVTG++GK++ + + +I +++G F G + P Sbjct: 117 ------APILAVTGSNGKTTTTTLISEILEKAGRRVFTGG------------NIGVPLCE 158 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 YL L + + +E SS L Q+ L K G F N +H+DYH Y + Sbjct: 159 YL------LDMEPAEIIVLEVSSFQL-QNCLR-FKPHVGLFLNFSANHLDYHADLDEYLD 210 Query: 229 AKMRLFEELLPKE 241 AK+ LF + P++ Sbjct: 211 AKLHLFSRMGPED 223 >gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Paris] gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Paris] gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy] Length = 445 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 33/368 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ + Sbjct: 20 ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLID--------GVH 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P VV + L+ A+ + I+A+TG++GK++V + I + Sbjct: 72 IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQP--------- 122 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 S + +N + P S + L K Y + G H A + G+ Q + LI Sbjct: 123 -SHATKGNLNNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQ---PDVSLI-- 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + +K + + L P AI+ DDAY+ + Sbjct: 177 --NNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIADKKILR 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S + H + T+ + + +PG V NAL AA C A+GI Sbjct: 234 FSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGI 293 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385 + L V GR + ++ +D + +N L +L + ++ GR I Sbjct: 294 SGNDIQRGLAHFGGVKGRMTMLSGQNQ--STVIDDTYNAN-LRSVLTALEVLSGRPGRKI 350 Query: 386 VVFGCGGD 393 VFG G+ Sbjct: 351 FVFGDMGE 358 >gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13] Length = 453 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 88/370 (23%), Positives = 146/370 (39%), Gaps = 44/370 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I EV++D+R + AG +FVA+ G + A A V++ S + Sbjct: 23 QIIEVTTDTRQVTAGCLFVALKGER---------FDAHAFAADAVAAGAGALLVSKRLLV 73 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P LVV +TR L A+ + + P ++A+TG+SGK+SV I + G + G Sbjct: 74 DVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMAAAILRECGEVLYTAG 133 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ--------GVTHVSVEASSHGLDQHRLD 200 +F D I + L L Q G H+ A + L + + Sbjct: 134 ------NFNND--------IGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTALTRPQ-- 177 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 NL H++ + AK +F LP + AII AD+ Sbjct: 178 -----TALVNNLAAAHLEGFGSLAGVAQAKGEIFTG-LPADGVAIINADNNDWPHWQSML 231 Query: 261 HNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++ R +G V Q T+ PLPG V NAL AA Sbjct: 232 NDKTVWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAA 291 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIR 377 L +++G V + L++L VPGR + ++ +D ++ +N S+ + + Sbjct: 292 ALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTEN--KLLLDDSYNANVGSMTAAAQVLA 349 Query: 378 TITSGRIIVV 387 + R++VV Sbjct: 350 EMPGYRVMVV 359 >gi|257389186|ref|YP_003178959.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286] gi|257171493|gb|ACV49252.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286] Length = 817 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 13/180 (7%) Query: 292 TISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEF 348 ++S+ G ++ + PL G Q NA +AA LC + +D A + L H PGRFE Sbjct: 239 SVSIAGDEWGVETKLPLLGAHQAINAGIAATLCRQVSDVDEATIARGLRNAH-WPGRFEI 297 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 +G R + +D AH +E +++ + + VV G D+D R I G ALD Sbjct: 298 MG---RDPLVVLDGAHNPGGVERVVETLAAFDYDELHVVAGSMVDKDL--RAIAG--ALD 350 Query: 409 LADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAG 466 AD + + D R+ED + + +E + + A A++ + D ++V G Sbjct: 351 GADHVVACEPDRDRAEDEQVVAKAFRDETAASVETRSDVAGAFDVALDGAGEDDCVLVTG 410 >gi|262316882|emb|CAZ44331.1| putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase [Raphanus sativus] Length = 137 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 24/106 (22%) Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNRI 446 M KIA + +D+ ++T DNP +EDP I +++ GI +++ G+R+ Sbjct: 1 MTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRL 60 Query: 447 -------EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485 A+R A+ M + D++VVAGKGHE + G+KK D Sbjct: 61 FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQL--EGDKKEFYD 104 >gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Desulfurivibrio alkaliphilus AHT2] Length = 550 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VSSDSR I+AG +FVA+ G K DGH F+ + + +GA +V+ S + + Sbjct: 59 VSSDSRTIEAGDLFVALRGEKFDGHRFVAEVVRKGAAGLVLESPPEEPLPVPVVLVADTL 118 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + + + + L +LA+TG+SGK++V I + Sbjct: 119 QALGDLAHYRRMQMKGL------KVLAITGSSGKTTVKEMTAAIME 158 >gi|257095425|ref|YP_003169066.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047949|gb|ACV37137.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 860 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 46/327 (14%) Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 S+FA + P ++AV GT+GK++ + I GL ++G T+T + + R+ Sbjct: 460 SMFADGDDARIP--LVAVAGTNGKTTTVRLIASILGEQGL---RVGMTTTDGVYVEGRRI 514 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG-RDHI--DY 219 T A + L GV +E + G+ + L + TN+G DH+ Y Sbjct: 515 DTGDCSGPKSARNVLLHPGVDAAVLETARGGVLREGLGFDRCDVAVVTNIGLGDHLGLSY 574 Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 T + K + + + P A++ A D V + A + C + H Sbjct: 575 ISTVEDLSVVKRVIVQNVTPVSGVAVLNAADPM---VARMADS--CPGTVTFFACDRNH- 628 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGE-------------------FQVYNALVAAG 320 + A+H Q+ + +D D L G FQV NA+ A Sbjct: 629 -PLMAMHRAQRKRVVY--RDGDALVASGGGVEHRLALAAIPVTQKGAIGFQVENAMAAVA 685 Query: 321 LCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376 A+G+D A + L PGRF + RG + DY H ++++ ++ + Sbjct: 686 AAWALGVDWATIRSGLASFVNDAQTAPGRFNVF--SYRGATLIADYGHNPDAIQALVNAV 743 Query: 377 RTITSG----RIIVVFGCGGDRDQGKR 399 + SG R +V+ G G RD+ R Sbjct: 744 DNLPSGPGSKRSVVISGAGDRRDEDIR 770 >gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 480 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 80/343 (23%), Positives = 132/343 (38%), Gaps = 42/343 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + SDSR G +FVAI G + DGH F+ + QGA +V + Sbjct: 21 ESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQGATVAIVDH---------EV 71 Query: 87 RSN-TPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQICQRS 140 +S+ P +VV +T L A + E +I+ +TG+ GK++ + + Sbjct: 72 KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVGKTTTKDLLSSLLA-- 129 Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 +GPT + + SF + L + +++ G +H+ A RL Sbjct: 130 -----TVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIA--------RL 176 Query: 200 DGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I + +G H+ +++ AK + + LL + A++ ADD + V+ Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGT-AVLNADDEH---VVP 232 Query: 259 RAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQ--VTISVEGKDFDFLFPLPGEFQVY 313 A A VL G Q + V A + + +G +PG V Sbjct: 233 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 292 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355 NAL AA + + G+ V L H + P R N G Sbjct: 293 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREG 335 >gi|170755898|ref|YP_001779747.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra] gi|169121110|gb|ACA44946.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra] Length = 873 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560 Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617 Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300 R N ++S K I+LKK+ NK + I+V Sbjct: 618 NRIKSKIILFTKNKNNPIISQHLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844 >gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp. H13-3] gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp. H13-3] Length = 469 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 25/150 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + SG + Q+G + + D KA + Sbjct: 117 IAITGTNGKSTTTALIAHILKASGRDT-QLGGNIGTAVLSLDP----------PKAQRFY 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D I AG NL DH+D H T Q Y + K E L Sbjct: 166 V--------VECSSYQIDLAPT--INPTAGILLNLTPDHLDRHGTMQHYADVK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 + AI+ DD+YS + R AG +V Sbjct: 212 VAGSGTAIVGVDDSYSTLIADRIERAGVKV 241 >gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N] gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N] Length = 468 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 37/260 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S V + GL PT F RL + A A + L Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGGLD-----PT-----FVIGGRLNS------AGANAQL 151 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG + VEA D L+ + ++A TN+ DH+D + A + F + Sbjct: 152 G-QG-EFIVVEADES--DASFLNLLPVMA-IITNIDADHMDTYGHDVARLKSAFIEFTQR 206 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296 LP A++ ADDA +E+M + + G + + V A + + ++ + Sbjct: 207 LPFYGSAVLCADDANVREIMPFVSRP---ITTYGLSSDAQVRAENVQADGTRMRFSVRRQ 263 Query: 297 GKDFDFL-----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----E 347 G++ D LPG V NAL A + +G+ A + + L V RF E Sbjct: 264 GREQDLPTLEVELNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGE 323 Query: 348 FVGTNSRGGRIYV---DYAH 364 F ++GG Y DY H Sbjct: 324 FPVAEAQGGGRYSVIDDYGH 343 >gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella drancourtii LLAP12] Length = 442 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 16/112 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I V +DSR ++ G +F+AI G + DGH FI +A AQGA A VV Y++ + Sbjct: 19 EITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVVK--YAVDGIT----- 71 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQI 136 P VV + L +++ H NI +A+TG++GK++ + I Sbjct: 72 -IPQFVVPDPLHAL----AKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAI 118 >gi|28572689|ref|NP_789469.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27] gi|28410821|emb|CAD67207.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27] Length = 475 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 20/191 (10%) Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLS 269 N+ DH+DY+ +Q A + F+ L A+I DDA K K ++G R Sbjct: 189 NISMDHVDYYGSQSAL---EGSFFDFSLRSSDAAVISLDDAACIKIASKLLQSSGSR--- 242 Query: 270 VGYQGKFIHLKK-----VC----AIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAA 319 G + I K VC N + T+S EG+ ++ F L GE N A Sbjct: 243 -GPSKRVITFGKNRSADVCLYEMGCMNPARFTVSYEGRFYNAGFKGLFGEHHAVNTCAAL 301 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + +G + LE + R E F G +I+ DYAH + L IR Sbjct: 302 SVLLCLGYGISESLEAILSFSGTRRRLELHFDSGGKDGIKIFDDYAHHPREIRTALTAIR 361 Query: 378 TITSGRIIVVF 388 ++ R+I +F Sbjct: 362 SVQHTRLIALF 372 >gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus mitis B6] Length = 457 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 78/380 (20%), Positives = 156/380 (41%), Gaps = 46/380 (12%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +SIF + ++ + DSR I G +FV + G + DGH FI A GA +V S Sbjct: 16 NDISIF----EDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENGA--VVTLS 68 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 + +N P ++VD+ + A+ K ++ AVTG++GK++ + Sbjct: 69 EKEI--------ANHPYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194 + S + T ++ +N + P + +G + +E H Sbjct: 121 LL------STKYKTYKTQGNY--NNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165 Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253 D H L + + L G H+ + + + KM++ + + P +S + AD Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAP-DSLLLAPAD---- 220 Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 +++ +V+ G QG + + + + K +T + P+ G++ Sbjct: 221 -PIVENYLPTDKKVVRFG-QGAELEITDL--VERKDSLTFKANFLEQVLDLPVTGKYNAT 276 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372 NA++A+ + + G+ + + + L + R E+ + G I D Y ++++I Sbjct: 277 NAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKA-ANGADILSDVYNANPTAMKLI 335 Query: 373 LKNIRTITS---GRIIVVFG 389 L+ I + G+ I V Sbjct: 336 LETFSAIPANEGGKKIAVLA 355 >gi|322804391|emb|CBZ01941.1| cyanophycin synthase [Clostridium botulinum H04402 065] Length = 873 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560 Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617 Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300 R N ++S K I+LKK+ NK + I+V Sbjct: 618 NRMKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGESFDYVYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844 >gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162] Length = 459 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 82/382 (21%), Positives = 136/382 (35%), Gaps = 76/382 (19%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120 I G A +S + + ++A I + P + L ++L G+ N +AV Sbjct: 57 IFYGQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGLPMLTRAQLLGQIMRNYDTSIAV 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----------AQDNRLTTPSPIYL 170 GT GK++ S + I + + PT ++ Q T + Y Sbjct: 117 AGTHGKTTTTSMLSHILLKG-----ECDPTISVGGILPAIGGNIRVGQSETFLTEACEYT 171 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 LS+ + G+ N+ DH+D+ + Sbjct: 172 NSFLSFFPTLGI--------------------------ILNMDADHLDFFKDIDD-IRHS 204 Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ------------GKFIH 278 R F ELLP + II AD + V A N C+V++ G + +F H Sbjct: 205 FRKFAELLPADGALIINADTPKYEMV---AENLPCKVITYGLEHDAEYTASDITYDEFGH 261 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 +HN + + I +PG V NAL + + +D+ ++ L+ Sbjct: 262 -PTFHVLHNGEDIGICS--------LKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKD 312 Query: 339 LHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRD 395 RF++ G + G + + DYAH +E L +I VF R Sbjct: 313 FGGTDRRFQYKG---KVGEVTIIDDYAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRT 369 Query: 396 QGKRPIMGKIALDLADIAIVTD 417 + P K AL LAD ++ D Sbjct: 370 KALLPEFAK-ALTLADHVVLAD 390 >gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase [Orientia tsutsugamushi str. Ikeda] Length = 469 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 65/357 (18%) Query: 33 VSSDSRHIQAGWIFVAIVG-NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 V +S+ IQ G +F+A+ N DGH F+ A+A+GA+A++VS L D + +N Sbjct: 27 VQFNSKDIQPGDLFIALQSENGGDGHQFVKDALARGADAVIVS---KLIDNN----TNDK 79 Query: 92 ILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 I++V+NT LS A+ R + +TG+ GK+S ++I + + ++ + Sbjct: 80 IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTS----TKEIMFKVFSTHYKTFAS 135 Query: 151 STISSFAQDNRLTTPS-PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + L S PI A+ L ++ S G Q + + L Sbjct: 136 RKNFNNLLGMLLNLASVPINTEYAIFELCTR----------SPGELQKLVKILPLNIAVL 185 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG----- 264 TN+ H ++ + + AK +F L+ K A+I +D + + ++ + G Sbjct: 186 TNINSAHTEFFNSLEHLTEAKCEIFNGLVNK-GIAVINSDSMFFTKQLEYINKLGINNVF 244 Query: 265 ---------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN- 314 R+L+ Y A + K + I+ G D F + G Q +N Sbjct: 245 TFGTHQLSNSRILNYYYD----------ADNQKSVININCNGYDLQFYTQILGYGQAFNI 294 Query: 315 --ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369 ++ + +C I+ V E + L GR G+IY+ H+++S Sbjct: 295 AAVMLVSNIC---KINLNKVTEVINTLRNYEGR----------GKIYLLNFHSNSSF 338 >gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 68/294 (23%), Positives = 131/294 (44%), Gaps = 38/294 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ S + +I Q G G T + I A Sbjct: 117 VIGITGSNGKTTTTSLLGEILQ--GAKEL-TGKTEVAGNIG----------IPALTASQG 163 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 LSSQ + +E SS L ++ + + +L H+DYH + + Y AK R+ + Sbjct: 164 LSSQ--DRLVLELSSFQL--MGIETFRPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKN 219 Query: 237 LLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 P + Y Y +E++ ++A + +++ + + + + A +N+++ T+ Sbjct: 220 QGPDD-----YLLLNYDQEILWQKAKESSAQIIPISIESEL----EKGAWYNEKEGTLMW 270 Query: 296 EGKDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 + + LF LPG+ V NALVA + +G+ +A + + H V R +FV Sbjct: 271 GSETVLKREDLF-LPGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVKHRIQFV-DQ 328 Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKI 405 + R Y D T+N +I + S + +V+ GG DR G + ++ ++ Sbjct: 329 IKERRFYNDSKATNNE-----ASITALRSFKEPLVWIAGGLDRGNGVKELLKEL 377 >gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces pristinaespiralis ATCC 25486] Length = 471 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 40/244 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++ G +F A G++ DGH + + A AT P +VV Sbjct: 34 DSRAVEPGSLFAAFRGDRVDGHDYA-----------EQAVAAGAAAVLATRPLGVPAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ + L A + + ++A+TG++GK+S + Q+ QR G + + G Sbjct: 83 DDVQSALGRLARFVVERLGTKVVALTGSAGKTSTKDLIAQVLQRKGPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR----LDGIKLIAGSFT 210 + +N + P L+ L +++ H+ +E + G+ R L ++ G Sbjct: 136 -SLNNEIGLP--------LTALRATEETEHLVLEMGARGIGHIRYLTELTPPRI--GLVL 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKRAHNAGCRV 267 N+G HI ++ AK + E L P A++ ADD + + R RV Sbjct: 185 NVGTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRAMASRTK---ARV 241 Query: 268 LSVG 271 L G Sbjct: 242 LLFG 245 >gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Leptospirillum rubarum] Length = 495 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 12/112 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R ++ +FVA+ G+ DGH ++ +A +GA A +VS ++ + P+ Sbjct: 36 VSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSR---------SVEATGPL 86 Query: 93 LVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQRSG 141 L+V +TR L A + K + ++ +TGT+GK++ + + G Sbjct: 87 LIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEG 138 >gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio parahaemolyticus 10329] Length = 437 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL+ +G I AL Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIG----------------VPALEL 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L +V +E SS L+ +KL A +F NL DH+D ++ Y AK+R+F+ Sbjct: 151 LEQDADLYV-LELSSFQLETTS--SLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFD- 206 Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 A++ DD + EV G + G + + + + + Q+V S Sbjct: 207 ---NAELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E K L G+ + NALV L A G+D L L+ + R + V N RG Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414 + D T+ + M + T ++V G G D +PI + L L + Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372 Query: 415 VTDD 418 DD Sbjct: 373 DGDD 376 >gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Prevotella bivia JCVIHMP010] Length = 476 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 78/374 (20%), Positives = 156/374 (41%), Gaps = 45/374 (12%) Query: 32 EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91 +V++DSR+ G IF+A+ G +G+ F A+ +G +V A + N Sbjct: 50 KVTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAE------AGNNR 103 Query: 92 ILVVDNTRKFLSLFASR-LYGKHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++VDN +L A + L +H NI + +TGT+GK++ + S + + + Sbjct: 104 FILVDN-----ALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELI------SAVLAEK 152 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205 T+ +F D I + + L ++S V +SH D +L ++ Sbjct: 153 YKVHHTLGNFNND--------IGVPRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPT 204 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265 G TN+GR H+ + + N K L++ L K A+++ +++ V Sbjct: 205 CGLITNVGRAHLQGFGSFEGVKNTKGELYDYL--KAHNALLFLNESNPDLVEMAEQREFE 262 Query: 266 RVLSVG------YQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNAL 316 RV++ G +G+ + + + ++ E ++ L G + + N L Sbjct: 263 RVITYGQDNTADVKGEVVSCAPLLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNML 322 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375 A + + G++ + LE VP T ++ ++ VD Y +S++ ++N Sbjct: 323 AAITIGLHFGVEPQKICHALESY--VPSNNRSQLTETKDNKLIVDAYNANPSSMKAAIEN 380 Query: 376 IRTITSGRIIVVFG 389 R + + + G Sbjct: 381 FRLMDIKNKMAILG 394 >gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis ITI-1157] gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis ITI-1157] Length = 469 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 10/125 (8%) Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 A R +++ Y+G H IH + + T+ +EG P+PG+ V NAL A + Sbjct: 248 ADVRAVNLTYKGGIAHFD----IHLQYEDTV-IEG----CTLPMPGDHNVSNALSAVAVA 298 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382 +G+ +A + + L V RF VG G I DY H + +LK R T G Sbjct: 299 RHLGMKTAQIRDALANFGGVNRRFTKVG-EVNGVTIIDDYGHHPVEIAAVLKAARQATEG 357 Query: 383 RIIVV 387 R+I V Sbjct: 358 RVIAV 362 >gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii 'MSU Goat Q177'] gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Coxiella burnetii CbuK_Q154] Length = 446 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 31/242 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+D+R IQ +F+A+ G D + FI +A QGA VV+ +++ P+ Sbjct: 25 VSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQGAVGAVVNR---------VVKTTLPL 75 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A + P + VTG+ GK++ + + + ++ G ++ Sbjct: 76 ICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTRALLASVFRQCG------NVLAS 129 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLIAGSF 209 SF +N + P L+ L + H ++ ++H + L G+ K Sbjct: 130 EKSF--NNNIGVP--------LTLLRLRPDHHYALLELGANHPGEITYLTGLAKPSVAII 179 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN G H++ + + AK +FE L + A+I DD +++ + AH+ R++S Sbjct: 180 TNAGPVHLEGFGSLEGVAKAKGEIFEG-LSSDGTAVINNDDHFAEFWRRLAHSR--RIIS 236 Query: 270 VG 271 G Sbjct: 237 FG 238 >gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia typhi str. Wilmington] gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington] Length = 457 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 37/239 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ A+ + I +GL G P AKA Sbjct: 107 IAITGTNGKSTTAALISHILNSNGLDYTVAGNIGV--------------PALQAKA---- 148 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S G +E SS LD ++ +K+ N+ DH+D +Q Y AK ++F+ Sbjct: 149 SKDGYV---LELSSFQLDLVKIFTVKV--AVLLNITPDHLDRYQDMNGYIAAKAKIFDR- 202 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVE 296 + K+S A+I D+ Y +++ +L K I ++N V + Sbjct: 203 MDKDSYAVINIDNDYCRKIF--------LLLQREQLIKLIPFSVTKILNNGISIVDDKIH 254 Query: 297 GKDFDFLFPLPGEFQ-VYNAL-VAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEFVGT 351 + + PL Q ++N +AA ++ IG++S +LE + + R +++G+ Sbjct: 255 DNNLTYKLPLNKNLQGLHNCENIAASYAVSKIIGVESKKILESISSFQSLHHRMQYIGS 313 >gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae LPCoLN] Length = 447 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++KI + DS+ +Q G +F A+ GN DGH F+ A GA A VVS Y F Sbjct: 23 DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ VD+T+ L S ++ +TG+ GK++ F + I S + Sbjct: 82 -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 P S +++LT P + +A+ + V + + S G Q L ++ Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183 Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261 T++ H + + Q Q K + + +LLPK+SP Y D R+ Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317 + S + L C AI ++ ++ + ++ P+ ++ N L+ Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISRD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 A L + + V+ L +L + P RFE + R G ++ A+ + MI + Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344 Query: 377 RTITS--GRIIVVFG 389 + S G+II++ G Sbjct: 345 LPLPSDGGKIILILG 359 >gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas uenonis 60-3] gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas uenonis 60-3] Length = 461 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 80/365 (21%), Positives = 144/365 (39%), Gaps = 41/365 (11%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 FA R G ++A+TG++GK++ +++ +GL G T S A+ L Sbjct: 97 FAYRYAGD--SMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGT--SLARQVALA- 151 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223 P Y+ +E SS LD + + N+ DH+D Y Sbjct: 152 PHAYYV----------------IELSSFQLDH--MYQFRAHIAILLNITPDHLDRYDHKM 193 Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283 + Y AKMR+ + P + I + +D +++ ++K R + +G V Sbjct: 194 ELYARAKMRITQNQQPTDY-FISWIEDDWTQRLLKEPGMGAGRRIFFSTEGS--SDDAVV 250 Query: 284 AIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 A + Q+ +++ + L G+ V NAL A+GI ++ LE Sbjct: 251 ASSHDGQLCFALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFT 310 Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400 VP R E++ + I A NS L+++R T I++ G G D+ Sbjct: 311 NVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPT----ILILG-GTDKGNDYND 365 Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460 +M + + + +T D+ K+ IP E + +AI A +M D Sbjct: 366 LMDLVKEKVVGLIYMTTDSA------KLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGD 419 Query: 461 VLVVA 465 ++++ Sbjct: 420 TVLLS 424 >gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp. NAS-14.1] gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp. NAS-14.1] Length = 461 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 40/276 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+ ++ V I + +G PT + + P+ Sbjct: 116 IIAITGSNGKSTTSALVHHILKHAGR------PTQLAGNIGRGVLDIEPA---------- 159 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + V +E SS+ D R + FTNL DH+D H YF AK RLF E Sbjct: 160 IDGEVVV---LELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 214 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293 P A+I D+ + + + RV+ V K L +V A K ++ Sbjct: 215 GGPDR--AVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFA--RKGFLSE 270 Query: 294 SVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 GK D + LPG NA A C +G ++ +P R + Sbjct: 271 YRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQT 330 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTI 379 VG GG +V+ + +N + KNIR I Sbjct: 331 VG--EAGGVRFVNDSKATNVDSAVKALAAFKNIRWI 364 >gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 487 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 47/334 (14%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA +V S+A S ++ + I VV L R +G +A+ GT G Sbjct: 80 QGASVVVASTAISKENPELMAATELRIPVVRRAEMLAELMRYR-HG------IAIAGTHG 132 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQ 180 K++ + QI +GL +F G + S + RL S +A+A S+L Q Sbjct: 133 KTTTTALTTQIYSEAGLDPTFVNG--GLVKSAGTNARLGC-SRYLIAEADESDASFLHLQ 189 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 + V + +D + G F L + ID+ LP Sbjct: 190 PMVCVVTNIEADHMDTY--------GGDFEVLKQTFIDFLHN---------------LPF 226 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK- 298 A++ DD +E++ R G +L+ G+ + + L + T+ +GK Sbjct: 227 YGLAVMCIDDPVVRELLPR---VGRPMLTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKP 283 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GR 357 + D +PG+ NA A + G+D +L L + RF+ +G G G+ Sbjct: 284 ELDITLNIPGKHNALNATAAIAVATEEGVDDDAILRALVEFEGTGRRFDHLGEFDTGNGK 343 Query: 358 IYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 + + DY H + +++ +K R R++++F Sbjct: 344 VMLVDDYGHHPSEVDVTIKAARAGWEDKRLVMIF 377 >gi|189502458|ref|YP_001958175.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Amoebophilus asiaticus 5a2] gi|189497899|gb|ACE06446.1| hypothetical protein Aasi_1103 [Candidatus Amoebophilus asiaticus 5a2] Length = 467 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 30/275 (10%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 T + DH+D ++ Q F + F LPK+ AI++ D A + + ++ +V+ Sbjct: 189 TTVDPDHLDIYKDQDG-FEEGFKQFLSRLPKQGIAILHHDVA-KRLIDDESYPTQAQVIQ 246 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL----------FPLPGEFQVYNALVA 318 + +CA + IS G+ FD++ P+PG + NAL Sbjct: 247 YALKDS-----PICA----DNIYISETGRFCFDYISEKFVIRDIQLPVPGYHNIENALAV 297 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIR 377 C+ IGI ++ E + + RF+ + R +++ DY H + +L IR Sbjct: 298 ITACLHIGIAPEIIREAIHTFQGIARRFDLI--IQRNDLVFIDDYGHHPVEITALLTTIR 355 Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP-EKIRAE-II 433 + + + V + K + +IA L LAD ++ D E P E I +E I+ Sbjct: 356 KLYPNKKVTVIFRPNQYSRTKD-FLQEIAQSLSLADCVLILDIYSDREVPIEGINSEAIL 414 Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 I + E + + ++K +V+V G G Sbjct: 415 QHITLPYKYACTKEDLVLQLAQVDKLEVVVNLGAG 449 >gi|307298495|ref|ZP_07578298.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915660|gb|EFN46044.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 447 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 16/184 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH++++ R F + K + ADD S+ + L+ Sbjct: 174 TNVRGDHLEHYDNSFDNLKNHFRYFSRSVGK--LLVTNADDPASERIF-------TDTLT 224 Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIG 326 G +G + + I N Q G + LF L PGEF VYNA A L +G Sbjct: 225 FGKDRGYYRFTDRSTGIMN--QTFRCFRGNEDLGLFKLMIPGEFNVYNATAAIALTHEMG 282 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGR-I 384 + + LE V RF F G + R + DYAHT + + ++ R G+ + Sbjct: 283 VPIESIKNSLESYRSVDRRFTFRGLDDFRNLFFFDDYAHTPDEISNTIRGAREFFPGKNV 342 Query: 385 IVVF 388 IVVF Sbjct: 343 IVVF 346 >gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 477 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 126/331 (38%), Gaps = 42/331 (12%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124 G + +VVSSA IR + P L+ +++ + + + + +AV GT Sbjct: 74 GTDCVVVSSA---------IRDDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ S + GL PT I L A + G Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + EA RL+ + + TN+ DH++ + A A F + LP A Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLA 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302 ++ DD EV A V+S G + + + V + + T+ + EG Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360 LPG V NAL AA + +G+ S + LE + RF +G T S G R+ V Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVASETIARALENFAGIGRRFNDLGEVTTSTGARVRV 340 Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388 DY H LE + R R++V F Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter sp. M18] Length = 469 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 3/109 (2%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS+DSR + G +FV + G + DGH FI A +G A +++ ++ + + + Sbjct: 28 VSTDSRQVAPGELFVPLKGERFDGHDFITTAAGRGVTAFLMAESWLA---AHGLPAGASA 84 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + V++T + L A+ + ++AVTG++GK++ + +I ++G Sbjct: 85 VAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTTKEMLARILAQTG 133 >gi|153941125|ref|YP_001389483.1| cyanophycin synthetase [Clostridium botulinum F str. Langeland] gi|152937021|gb|ABS42519.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F str. Langeland] gi|295317584|gb|ADF97961.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F str. 230613] Length = 873 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 143/359 (39%), Gaps = 51/359 (14%) Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 S ++G T+T + + + A + L+++ V +E + GL + L Sbjct: 501 FSGKKVGMTTTGGIYINNKCINKGDTTGYYSAKTVLTNKEVEVAVLELARGGLIRDGLPY 560 Query: 202 IKLIAGSFTNLGRDHIDYHQTQ----QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 G TN+ DH+ AY A L E + K+ +I ADD S ++ Sbjct: 561 DLADVGIITNVTEDHLGLGGINTLEDMAYVKA---LVGEAVKKDGYVVINADDEASISII 617 Query: 258 KR--------AHNAGCRVLSVGYQGK---------FIHLKKVCAIHNKQQVTISVEGKDF 300 R N ++S K I+LKK+ NK + I+V Sbjct: 618 NRIKSKIILFTKNKNNPIISQYLDNKNLVLYLDEDTIYLKKL----NKNEEIINVN---- 669 Query: 301 DFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRG 355 L G+ + V NA+ A IA+G+D + + LE PGRF N G Sbjct: 670 KIPITLGGKLIYNVENAMAAIAALIALGLDVNTIRQGLESFSNEEQNPGRFNMY--NVHG 727 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 + +DY H +++L++I+ I RII V G GDR +G I + D + Sbjct: 728 TNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICGENFDYVYI 787 Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG----------NRIEAIRTAIEMLNKQDVLVV 464 +D + A+++ G +E G + EA++ AIE N D++++ Sbjct: 788 KEDRDKRGRKHGEIADLLK--KGILETGFKNSKLNIILDEEEALKKAIEFSNPGDLVIM 844 >gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9515] Length = 456 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 68/306 (22%), Positives = 130/306 (42%), Gaps = 38/306 (12%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S DSR+I +F+AI G DGH F+ + + +G +A+V+ + P Sbjct: 31 ISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVIRDG-----MQHLLPEKFPY 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 +V NT + A L+ + NI + +TG+ GK++ + ++ ++ G +I T Sbjct: 86 WLVPNTLESFQKLA--LHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLG----KIKLT 139 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206 +L + I + + + L S + +E GL Q ++ + + Sbjct: 140 ----------QLNYNNEIGVGRTI--LDSDFKDKILIIEMGMRGLGQ--IENLSKFSEPD 185 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263 TN+G HI +++ AK + + L P II A+D + +E +K+ + Sbjct: 186 IAVITNIGSSHIGILGSKENITYAKCEITKYLKP-SGVVIIPANDLFLEETLKKNWSGRI 244 Query: 264 -GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +L + + I+ K + N+ +I +E K F+ L G +N L + Sbjct: 245 IKVDLLDINQKVDSINKKNLIGFFNRSNNSIIIEDKLFE--ISLKGFHNAFNFLFVYAVA 302 Query: 323 IAIGID 328 GI+ Sbjct: 303 KEFGIE 308 >gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus AQ3810] gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus K5030] gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AN-5034] gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus Peru-466] gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio parahaemolyticus RIMD 2210633] gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus AQ3810] gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus Peru-466] gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AN-5034] gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus K5030] Length = 437 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL+ +G I AL Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIG----------------VPALEL 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L +V +E SS L+ +KL A +F NL DH+D ++ Y AK+R+F+ Sbjct: 151 LEQDADLYV-LELSSFQLETTS--SLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH 207 Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 A++ DD + EV G + G + + + + + Q+V S Sbjct: 208 ----AELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E K L G+ + NALV L A G+D L L+ + R + V N RG Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414 + D T+ + M + T ++V G G D +PI + L L + Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372 Query: 415 VTDD 418 DD Sbjct: 373 DGDD 376 >gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Kingella denitrificans ATCC 33394] Length = 456 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 21 FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80 P + V +DSR Q G +FVA+ G D H F+P +A+GA AIV S Sbjct: 19 LPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIV-----SRS 73 Query: 81 DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 D + V D + A+ +P + +TG+SGK++V + + + Sbjct: 74 DLAGVAGC---FFVPDTLHALQQMAAAWRKAVNP-FVFGITGSSGKTTVKEMLAAVLR 127 >gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Thalassiobium sp. R2A62] Length = 472 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E + VS D+R I G +FVA+ + DGH F+ A+ +GA A +V+ + Sbjct: 20 EWAASGVSIDTRTIAKGDLFVALA-DIRDGHDFVGMALDKGAAAALVTHRPE------GV 72 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + P+L+V N K L S + ++ +TG+ GK+S ++ + Q G Sbjct: 73 ADDAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTKEMLRTVLQAQG 127 >gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis KCTC 2396] gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis KCTC 2396] Length = 446 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 48/354 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ILA+TG++GKS+V + V ++ + G++ A L TP L Sbjct: 110 ILAITGSNGKSTVTTLVGEMAKACGVN------------VAVGGNLGTP-------VLDL 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L+ + +V VE SS L+ D + +A + NL DH+D + AY AK+R+F Sbjct: 151 LADEVELYV-VELSSFQLETT--DRLGALAATVLNLSEDHMDRYADMMAYHLAKLRVFYG 207 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTIS 294 + ++ DDA ++ + R L G++ + K + + + Sbjct: 208 CRRQ----VLNRDDALAQPPLSREAEITWFTLKTPEPGQYGVLEEKDGAWLAYGAEKLLP 263 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 VE + G+ NAL A L A G++ L+ L + + R E+V + Sbjct: 264 VE------QMRIRGKHNWSNALAALALADAAGLEREPCLQALREFTGLTHRCEWVA--DK 315 Query: 355 GGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLAD 411 G Y++ + +N + + L + +TSG I+++ CGG + Q P+ + ++ Sbjct: 316 DGVAYINDSKATNVGATQAALAGLGPVTSGGIVLI--CGGQGKGQDFTPLAPAVKEWVST 373 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + I+ +D P K++ + G+ + EA++ A E + D+++++ Sbjct: 374 LIIIGEDGP------KLKEALAGGVMALSAE-TMEEAVKLAAEKSSPGDLVLLS 420 >gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris] gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris] Length = 455 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%) Query: 86 IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I ++ Sbjct: 73 IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G++ F IG +SS + ++ +A Y S+ H Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I ++ NL DH D + A + +PK AI DD EV+ R Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + R+ ++ G+ + ++ Q + G + +PL G+F V N L A Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAI 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G++ + + LE+ V R E V +N G +Y D+AH ++ + ++ Sbjct: 293 AATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTAITKTIDALK-- 349 Query: 380 TSGR 383 SGR Sbjct: 350 RSGR 353 >gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. EE-36] Length = 478 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 49/300 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R + G +FVA+ + DGH F+ A+ +GA A +V+ + N P+ Sbjct: 26 VSIDTRTLAPGDLFVAL-KDVRDGHDFVAMALEKGAGAALVTH------VPEGVAENAPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLSSF-- 145 L+V++ + L + + ++AVTG+ GK+S +A F Q + + S+ Sbjct: 79 LIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSYNN 138 Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G T++ D + P I L+ ++ V V+ A+ H Sbjct: 139 HWGVPLTLARMPADTEYAVIEIGMNHPGEI---SPLAQMAKPDVAMVTTVAAVH------ 189 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +F N+ ++ K +F+ L P A+I AD ++ +M Sbjct: 190 -------LEAFANVAEIAVE-----------KAAVFDGLQPG-GVAVINADIEHAAILMA 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 +A + R + G G L V + V +G F PG NAL A Sbjct: 231 KAVDRRLREVEFGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGA 290 >gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima DSM 10411] gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima DSM 10411] Length = 435 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 62/361 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TGT+GKS+ + V++I + + G L IY Sbjct: 95 IIAITGTNGKSTTVALVERILKGASKRVIACGNYG----------LPLSEAIY------- 137 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + VEASS+ L+ +D K + N+ DH+ +H + Y AK ++F+ Sbjct: 138 ---ENAEYYVVEASSYQLE--FIDKFKPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFKN 192 Query: 237 ------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 + +S + I+ A V KR NA C K ++ + Sbjct: 193 QLEDDFFIKNDSDSYIFDGKANLFLVSKRDRNADC-----------FFEKNGVIVNRPEY 241 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 + I G L G N AA + + GI+ + E + + + R EFV Sbjct: 242 LRIDKTG--------LFGSKVFENIAFAALIGLLCGIEKKTIKEVVGTMSNLEHRIEFV- 292 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR--PIMGKIAL 407 G + Y D T +L+ + I + G +I+++ G + R P++ K A Sbjct: 293 DEIDGVKFYNDSKAT--NLDAVEAAINSFDEGIKIVIILGGKHKGESYSRLLPLLEKRAR 350 Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467 A+V ED + I E+ +P + N A+R A E+ +K DV++ + Sbjct: 351 -----AVVV----YGEDRKVILNELDGFLPVPLPAVNIWGAVRAAFEVASKDDVVLFSPG 401 Query: 468 G 468 G Sbjct: 402 G 402 >gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC 49176] Length = 487 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 57/349 (16%) Query: 30 INEVSSDSRHIQA----GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 IN ++SR I + +FV I+G + D H FIPQ + GA+A + + L + Sbjct: 25 INGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVVENGAKAFFIKKGHEL---PSG 81 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143 I I V D +L + L+ + NI + +TG+ GK++ V + LS Sbjct: 82 IGETAAIEVEDTEA---ALLDTGLWYREKFNIPFIGITGSVGKTTTKEMVA-----AALS 133 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 S I T ++ + P ++ L + + + + + H ++ K Sbjct: 134 SINIHKTKG----NANSTIGLPLTLF---GLEPCNEAAIIEMGIS------EFHEME--K 178 Query: 204 LIAGS------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 L+ FTN+G HI +++ K+ + + +S I ADD +V Sbjct: 179 LVEAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHI-TDCFTADSVLFINADDELLMKVA 237 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------------DFL 303 A N+ R +V + F +K A +TIS G DF Sbjct: 238 --AENSEFRPKNVKHIVTFGINEK--ADFYASSITISDSGTDFVANYKSENGEAVSEQIH 293 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352 G V NAL A + + +GI A+ + L + +PGR + +N Sbjct: 294 LKTLGLHNVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNIIKSN 342 >gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Legionella pneumophila str. Lens] gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Legionella pneumophila str. Lens] Length = 445 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 149/368 (40%), Gaps = 33/368 (8%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ + Sbjct: 20 ITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLID--------GVH 71 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P VV + L+ A+ + I+A+TG++GK++V + I + Sbjct: 72 IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQP--------- 122 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHRLDGIKLIAG 207 S + +N + P S + L K Y + G H A + G+ Q + LI Sbjct: 123 -SHATKGNLNNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQ---PDVSLI-- 176 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 N+ H++ + +K + + L P AI+ DDAY+ + Sbjct: 177 --NNIAPAHVEGFGSIDGVARSKGEIHQGLSPT-GVAIVNDDDAYAHFWDDLIADKKILR 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 S + H + T+ + + +PG V NAL AA C A+GI Sbjct: 234 FSSLHPADIYAQDIRLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGI 293 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385 + L V GR + ++ +D + +N L +L + ++ GR I Sbjct: 294 SGNDIQRGLAHFGGVKGRMTMLSGQNQ--STVIDDTYNAN-LRSVLTALEVLSGRPGRKI 350 Query: 386 VVFGCGGD 393 VFG G+ Sbjct: 351 FVFGDMGE 358 >gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Verrucosispora maris AB-18-032] Length = 474 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 148/363 (40%), Gaps = 43/363 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 V DSR + +G +FVA G K DGH + A+ GA A++ + Sbjct: 28 GSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAAAVQAGAAAVLGTREV----------PGV 77 Query: 91 PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++VV + ++ A + + P+ ++ +TG+SGK++ + Q+ R G + G Sbjct: 78 PMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSGKTTTKDLIAQLTARLGETVAPPG- 136 Query: 150 TSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIKL 204 SF +N L P + + + YL ++G+ HV L + I + Sbjct: 137 -----SF--NNELGHPYTALQAVPSTRYLVLEKGARGIGHVRY------LCEVAPPRISV 183 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + N+G HI +Q+ AK L E LP + A++ ADD + R Sbjct: 184 V----LNVGVSHIGEFGSQENIALAKGELVEA-LPADGLAVLNADDPLVDAMAGRTT--- 235 Query: 265 CRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 RV+ G + ++ V + T+ L G QV+N L AA + Sbjct: 236 ARVVRYG-EAAHADVRAVDVTLDERGRPAYTLVTPEGSATVRLALTGRHQVWNTLAAAAV 294 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380 +G+ + L +L +V R V + G + D Y S+ + L+ + + Sbjct: 295 ARELGMPLVEIAVALGELGLVSTRRMDVFERTDGVTVIDDSYNANPASMSVALRALAGVG 354 Query: 381 SGR 383 +GR Sbjct: 355 AGR 357 >gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister micraerophilus DSM 19965] gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister micraerophilus DSM 19965] Length = 449 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 22/174 (12%) Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 ++ E SS L+ + K + N+ DH++ H T +AY AK R+FE + E+ Sbjct: 156 IAAEVSSFQLE--FIKNFKPKTAAILNITPDHLERHHTMEAYVQAKARIFEN-MNFENCI 212 Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKD 299 ++ ADD Y+ E+ M H C + S+ G F+ + +++ IS +G Sbjct: 213 LLNADDKYTNELTEMANKHTNVC-LFSIQKNIDNGAFL---------DGEELVISYKGNK 262 Query: 300 FDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + G+ NAL A+ L GI + L++ +P R EFV Sbjct: 263 INICNKNELQIKGKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFV 316 >gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria meningitidis alpha275] Length = 260 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 24/166 (14%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + + ++A+TG++GK++V S V +C + GL + G T A+ R + +++ Sbjct: 107 RRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKKADVWV- 165 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +E SS L+ + ++ A + N+ DH+D + Y + K Sbjct: 166 ---------------LELSSFQLENT--ESLRPTAATVLNISEDHLDRYDDLLDYAHTKA 208 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 ++F + ++ ADDA+ + MKRA G V VG + +F+ Sbjct: 209 KIFR----GDGVQVLNADDAFCR-AMKRAGARGEMVF-VGTRSRFL 248 >gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM 15436] gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM 15436] Length = 455 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 30/268 (11%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 + +AV G GK++ + + +G+ SF +G ++ F L Sbjct: 103 DFVAVAGAHGKTTTSGMLAAALSAAGMDPSFAVG--GVVAGFGTGAHL------------ 148 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 QG V+ S G + + L+ TN+ DH+D++ +++A F A F Sbjct: 149 ----GQGRFFVAEADESDGSFLNYTPRVALV----TNVEPDHLDHYGSREA-FEAVFDEF 199 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQ 289 + + ++ ADD + + +R G RV S G + + + +V + Sbjct: 200 VTRITADGALVVCADDPGASALGQRVLATGRRVWSYGLDSSVEGAQHLQISEVELHASGS 259 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 +S + + G V NA A + + +GI +++ E L+ RFEF Sbjct: 260 SFLVSYGDETVAVHLNVSGLHNVLNATGALAVALDLGISLSVMAEALKAFTGTGRRFEFK 319 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR 377 G + G R++ DYAH + + LK R Sbjct: 320 GEVA-GKRLFDDYAHHPSEVAAALKQAR 346 >gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM 18205] Length = 825 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 44/342 (12%) Query: 45 IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +F A+ + DGH +IP+ +G + VV+ ++ A+ L V NT + L Sbjct: 41 LFFALKSERNDGHNYIPELYRRGVKNFVVT---NVPKGYASDYPGANFLKVVNTLEALQR 97 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A R + I+ +TG++GK+ V ++ Q+ S T S + ++++ Sbjct: 98 LAERHRDEFNIPIVGITGSNGKTMVKEWLYQLLSPSMF--------VTRSPRSYNSQIGV 149 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 P ++L ++ + GV + L D I+ TNLG H + + + Sbjct: 150 PLSVWL---MNEQTQVGVFEAGISMPGEMLALR--DIIQPTIAVLTNLGAAHQENFSSME 204 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKK 281 K+ LF ++ +IY DD +V+ + Y+G+ F LK Sbjct: 205 EKCREKLILFH-----DAETVIYDGDDEVINKVIAEYPD---------YKGEKLFWSLKN 250 Query: 282 VCA------IHNKQQVTISV---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 A I +Q VT+ +G++ F P V NA+++A + +G+ + + Sbjct: 251 AEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPFIDNASVQNAIISAVVASKLGLSAEDI 310 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMIL 373 + + +L V R E V G + D Y NSL++ L Sbjct: 311 DKRMTQLEPVAMRLE-VKVGQHGCTLINDSYNSDINSLDIAL 351 >gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Streptomyces sp. e14] Length = 471 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 40/236 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V DSR G +FVA VG + DGH F +A GA A++ S + P Sbjct: 31 VVRDSREAVPGSLFVAFVGERVDGHDFAAAVVAAGAVAVLASRPVGV-----------PA 79 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF------- 145 +VV++ + L A + + ++A+TG++GK+S + Q+ Q + F Sbjct: 80 IVVEDVQAALGALARHVVNRLGATLVALTGSAGKTSTKDLIAQVLQTKAPTVFTPGSLNN 139 Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 +IG T S +D R + + ++G+ H+ ++ + Sbjct: 140 EIGLPLTALSATEDTRFL----------VLEMGARGIGHI----------RYLTELTPPK 179 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAIIYADDAYSKEVMKR 259 G N+G HI ++ AK L E L E AI+ ADD + + R Sbjct: 180 VGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAEDGGAAILNADDPLVRAMASR 235 >gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21] gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21] Length = 469 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 74/341 (21%), Positives = 125/341 (36%), Gaps = 61/341 (17%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA +V S+A + I VV L R + +AV GT G Sbjct: 66 EGAAVVVTSTAVRRTNPEVAHALENRIPVVRRAEMLAELMRLR-------STIAVAGTHG 118 Query: 126 KSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 K++ S + + L I PT I + + RL + Sbjct: 119 KTTTTSMIASL-----LDCGAIDPTVINGGIIEQYGSNARLGDSDWMV------------ 161 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--- 238 VEA RLDG + TN+ +H+D++ F+ F E + Sbjct: 162 -----VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFDGVKDAFVEFIHNV 209 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-------NKQQV 291 P A++ D + V+ + + RV++ G+ + +C ++ N+ V Sbjct: 210 PFYGAAVLCIDHPEVQAVIGKVRDR--RVVTYGFNLQ----ADICGVNVQPHEGGNRFDV 263 Query: 292 TISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + G++ + P+PG V NAL A + I +G ++ V RF Sbjct: 264 IVRQRGEEDRRIENVCLPMPGRHNVQNALAAIAVSIEMGCPDEVICNGFSSFGGVRRRFT 323 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 VG+ + G + DY H + +L+ R T R+I V Sbjct: 324 NVGSVA-GATVIDDYGHHPVEIRAVLEAAREATKNRVIAVM 363 >gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp. SE45] gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp. SE45] Length = 467 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 119/301 (39%), Gaps = 58/301 (19%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P ++AVTG++GKS+ ++ + I SG +D++L + + Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILTSSG----------------RDSQLAG----NIGRG 158 Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 + + G V V E SS+ D R + FTNL DH+D H YF AK R Sbjct: 159 VLDIDPPGDGGVVVLELSSYQTDLARA--LTPDVAVFTNLSPDHLDRHGGMGGYFAAKRR 216 Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAH-----------NAGCRVLSVGY-----QGKF 276 LF E P +I D+A + + + ++G R+ G+ +G Sbjct: 217 LFSEGGPDR--CVIGVDEAEGRYLANQMSEGAADDRVIRVSSGTRLSGPGWDVFARKGFL 274 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 +K +Q +I D + LPG NA A A+G+ +V Sbjct: 275 TEWRK-----GRQVASI-----DLRQVRGLPGAHNHQNACAAYAAARALGVAPRVVEAAF 324 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 +P R + V GG YV+ + +N ++ LK ++ R I CGG + Sbjct: 325 MSFEGLPHRSQIVA--EAGGVAYVNDSKATN-VDAALKALQAFPKVRWI----CGGLMKE 377 Query: 397 G 397 G Sbjct: 378 G 378 >gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 467 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 137/370 (37%), Gaps = 52/370 (14%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120 I G A ++ + ++A I + P + L + L G+ N +A+ Sbjct: 65 IYYGQRATNITDDVDVVVYTAAIHPDNPEFACAKEKGLPMLTRAELLGQIMRNYDTPVAI 124 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177 +GT GK++ S V I L + PT ++ N S ++ +A Y Sbjct: 125 SGTHGKTTTTSMVSHI-----LLAGDCDPTISVGGILPAIGGNIRVGNSETFVTEACEYT 179 Query: 178 SS--QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +S +S+ N+ DH+D+ + R F Sbjct: 180 NSFLSFFPKISI---------------------ILNMDADHLDFFKDIDD-IRHSFRRFA 217 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQ 289 ELLP + II AD +++++ + C V++ G YQ I K + Sbjct: 218 ELLPADGTLIINADTPKYEDIIR---DLPCNVITYGLEHDADYQAADITYDK----YGHA 270 Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 ++ G K + +PG V NAL A L +G+ ++++ L RF++ Sbjct: 271 SFSVLRNGVKVGSYYLKVPGIHNVSNALAAIALGHLLGLSEEVIIKGLGSFTGTDRRFQY 330 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIAL 407 G G I DYAH +E L ++ VF R + P K AL Sbjct: 331 KG-EVAGVTIVDDYAHHPTEIEATLHAAHNYPHKKLWCVFQPHTYTRTKALLPEFAK-AL 388 Query: 408 DLADIAIVTD 417 LAD +V D Sbjct: 389 SLADHVVVAD 398 >gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio fischeri ES114] gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri ES114] Length = 404 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 62/356 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V ++ + +G+ + G FA + L + +Y+ + S+ Sbjct: 74 VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 129 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S +KL A +F NL DH+D +Q Y AK+R+FE Sbjct: 130 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH 171 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295 I+ DD + +++ + S G+ QG + ++K I + T+ + Sbjct: 172 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKD-GIEYLAKNTVPL 220 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+ + N+LVA L A GI+ L+ L + + R + V N+ Sbjct: 221 LAANE---LGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNN-- 275 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 G +V+ + +N + G++ ++ G GK +++ L D+ ++ Sbjct: 276 GIRWVNDSKATNVASTLAALSGLQLEGKLHLLVG-----GVGKGADFSELSPALHDLNLM 330 Query: 416 T------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D S DP + E ++ EAI T LNK D+++++ Sbjct: 331 MYCFGEDGDQFVSLDPRSLLCETMN------------EAIATLYPTLNKGDMVMLS 374 >gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans ATCC 25259] gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans ATCC 25259] Length = 463 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 85/339 (25%), Positives = 131/339 (38%), Gaps = 47/339 (13%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 P IA GA+A+V S+A + I +V L R +A+ Sbjct: 59 PSNIA-GADAVVTSTAVQESNPEVVAAREKKIPIVPRALMLAELMRLR-------QGIAI 110 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180 GT GK++ S V I +G+ PT I +LT A + Q Sbjct: 111 AGTHGKTTTTSLVASILGEAGMD-----PTYVIG-----GKLT-------AAGTNARLGQ 153 Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 G V+ S D L +IA TN+ DH+D + F + LP Sbjct: 154 GDFLVAEADES---DASFLYLTPVIA-IVTNIDADHMDTYGHDFDRLKTAFVDFCQRLPF 209 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTISV 295 A++ DDA +E++ R + + G+ +V A+ H + + T+ Sbjct: 210 YGMAVLCIDDANVREILPRITKP---ITTYGFDPA----AQVRAVDTRFEHGQMRFTVKR 262 Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-S 353 EG D D PG V NAL A + +G A +++ L + H V RF+ G + + Sbjct: 263 EGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRYGEHPT 322 Query: 354 RGGRIYV---DYAHTSNSLEMILKNIRTITSG-RIIVVF 388 + G Y DY H + L R G R+++VF Sbjct: 323 KDGGCYWLIDDYGHHPVEMAATLAAARGAFPGRRLVLVF 361 >gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029] gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029] gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Chlamydophila pneumoniae TW-183] Length = 447 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++KI + DS+ +Q G +F A+ GN DGH F+ A GA A VVS Y F Sbjct: 23 DKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ VD+T+ L S ++ +TG+ GK++ F + I S + Sbjct: 82 -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 P S +++LT P + +A+ + V + + S G Q L ++ Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183 Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261 T++ H + + Q Q K + + +LLPK+SP Y D R+ Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317 + S + L C AI ++ ++ + ++ P+ ++ N L+ Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISGD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 A L + + V+ L +L + P RFE + R G ++ A+ + MI + Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344 Query: 377 RTITS--GRIIVVFG 389 + S G+II++ G Sbjct: 345 LPLPSDGGKIILILG 359 >gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440] gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440] gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1] Length = 482 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 99/429 (23%), Positives = 169/429 (39%), Gaps = 68/429 (15%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 A A+ +VVSSA + + I VV L R + +AV GT Sbjct: 73 AATADVLVVSSAINPANPEVATALERRIPVVPRAEMLAELMRYR-------HGVAVAGTH 125 Query: 125 GKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSS 179 GK++ S + + GL +F IG +++ + +L T S +A+A S+L Sbjct: 126 GKTTTTSLLASVFAAGGLDPTFVIG--GRLTAAGTNAQLGT-SRYLIAEADESDASFLHL 182 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL----FE 235 Q + V + D + G F L + +++ Y A M L Sbjct: 183 QPMVAVVTNIDA--------DHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVR 234 Query: 236 ELLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 E+LP+ + P + Y +S+E RA N V G Q F L++ +++ + +S Sbjct: 235 EILPQVKRPTVTYG---FSEEADIRAIN----VRQQGMQTHFTVLRR-----DREPLEVS 282 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NS 353 V +PG V NAL + GI +++ L V RF+ G Sbjct: 283 VN---------MPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGELPV 333 Query: 354 RGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410 GG + + DY H + ++K +R S R+++V+ R R + L Sbjct: 334 EGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQP--HRYSRTRDLYDDFVQVLG 391 Query: 411 D--IAIVTDDNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459 D + ++ + P E+ P ++ H I P +IE+G + + +L Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPL--VKPLLRAG 449 Query: 460 DVLVVAGKG 468 D+L+ G G Sbjct: 450 DILLCQGAG 458 >gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium Broad-1] gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium Broad-1] Length = 472 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 145/355 (40%), Gaps = 61/355 (17%) Query: 52 NKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF---- 105 +E +F+ +Q G + ++VS+A IR + P V K L ++ Sbjct: 57 REEGATVFVGHDASQVDGVDTLIVSTA---------IREDNPEYVA-AVEKGLRIYPRSA 106 Query: 106 --ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS---SFAQDN 160 AS + G+ +LAV GT GK++ S + Q +G + PT T+ + + N Sbjct: 107 GLASVMEGR---RVLAVAGTHGKTTTTSLLTVSLQAAGAA-----PTYTVGGELAASGTN 158 Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220 S +++A+A S G V K A TN+ DH+D Sbjct: 159 AAEGSSDLFVAEADE---SDGAFLV----------------YKPYAAVVTNVEADHLDQW 199 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 T++AY + L P + + DD + ++ AH+ G R + VG L Sbjct: 200 GTEEAYREGFAQFVGRLAP-DGFLVAVIDDPGAADLRHVAHSLGRRFIGVGES----ELA 254 Query: 281 KVCAIHNKQQVTIS----VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334 V A+ + T S V+G D +PG V +AL A + + +G L+ Sbjct: 255 DVRAVDIVLEGTTSSFTVVDGLDELGRITLQIPGRHYVADALAALTVGLRLGHSFDLLKA 314 Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388 LE R E G + G R+Y YAH + + L + R++ GR+IV F Sbjct: 315 GLESFTGTRRRMERKG-EAAGVRVYDSYAHHPSEIAGDLVSGRSVAGEGRLIVAF 368 >gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales bacterium mesG1.Ag.4.2] Length = 441 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 46/292 (15%) Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168 L+ K ++ VTGT+GKS+ + ++ I FQ G Sbjct: 103 LWSKPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQGGN------------------- 143 Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 L L+ ++ + + +E SS L + ++ + NLG DH+DYH++ YF Sbjct: 144 -LGYPLAGVAEEVYDYYVLEVSSFQLKWFAEERVRFHLSAVINLGEDHLDYHRSIDDYFK 202 Query: 229 AKMRLFEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 +K+R L K + I A + KE++K G ++ F+ L + Sbjct: 203 SKLR-----LAKMTEGITVVPKAVADCQKELLK-----GSKLRP------FVALGEGFDS 246 Query: 286 HNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344 +++ + + +E + D P G N LV + IG+ + V + L+ + Sbjct: 247 FDREHLRVRGIEFRTSD--LPFTGLHNYENVLVVLLISQLIGLSAEDVFQELKSYTFLSH 304 Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 R + V G Y D + +N+ + +R+ + I++ G G ++D+ Sbjct: 305 RLQLV--RELEGVKYYDDSKATNA-HAVSAALRSFEPSKTILILG-GREKDE 352 >gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium bathyomarinum JL354] Length = 481 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 115/300 (38%), Gaps = 61/300 (20%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYL 170 ++ +A+ GT GK++ S + + L +I PT I F + RL + Sbjct: 108 KSTIAIAGTHGKTTTTSMIAGL-----LDCGEIDPTVINGGVIEQFGSNARLGDSDWMV- 161 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 VEA RLDG + TN+ +H+D++ F Sbjct: 162 ----------------VEADESDGSFLRLDGTIAV---VTNIDPEHLDHY----GDFEGV 198 Query: 231 MRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286 R F E + P AI+ D + V+ + + RV++ G+ + +CA++ Sbjct: 199 KRAFVEFIHNVPFYGAAILCVDHPEVQAVIAKVRDR--RVITYGFSLQ----ADICAVNV 252 Query: 287 ------NKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 N+ V + G++ + P+PG V NAL A + + + ++ E Sbjct: 253 KPEAGGNRFDVMVRQRGQEDRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVIREGF 312 Query: 337 EKLHVVPGRFEFVGT-NSRGGRIYV--DYAHTSNSLEMILKNIRTI-----TSGRIIVVF 388 + V RF VGT GG V DYAH + +L R T R+I V Sbjct: 313 ARFGGVRRRFTRVGTVPVEGGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARVIAVM 372 >gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya dadantii Ech703] gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya dadantii Ech703] Length = 453 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 133/322 (41%), Gaps = 32/322 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I EVS+D+R + AG +FVA+ G D H + A+A GA A+VV ++ Sbjct: 24 IGEVSTDTRKLTAGCLFVALRGENFDAHDYAADAVAGGAGALVVCKRLPIE--------- 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P LVV +TR L A+ + + ++A+TG+SGK+SV I ++ G + G Sbjct: 75 VPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVLYTAG- 133 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 +F D + P+ L L + + A+ G + + +K Sbjct: 134 -----NFNNDIGV----PLTL---LRLAPEHDFAVIELGANHIGEIAYTTELVKPETALV 181 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268 N+ H++ + AK +F+ LP+ II AD S ++ + + + L Sbjct: 182 NNIAAAHLEGFGSLAGVAQAKGEIFDG-LPENGVGIINAD---SNDIARWQPSLAGKTLW 237 Query: 269 ----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 F+ V A T+ D PLPG + NAL A L I+ Sbjct: 238 RFSSQPASSADFLA-SDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAIS 296 Query: 325 IGIDSALVLEHLEKLHVVPGRF 346 +G V L +L VPGR Sbjct: 297 VGASLEAVKLGLSRLQAVPGRL 318 >gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae WA1] gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae WA1] Length = 462 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 80/332 (24%), Positives = 134/332 (40%), Gaps = 37/332 (11%) Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121 Q I A+V SSA S + + I V+ L R YG +A++ Sbjct: 61 QNIEDDVTAVVTSSAISPTNEEIIEAKSKKITVISRGEMLAELMRLR-YG------IAIS 113 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 G+ GK++ S + QI +GL+ P I N S A + LSS+ Sbjct: 114 GSHGKTTTTSLISQIMMHAGLN-----PVCIIGG----NHFNLKS----NAACNDLSSE- 159 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 ++ EA RL + + TN+ DH+DY+ +A A + + +P Sbjct: 160 --YMVCEADESDGSFLRLSPVINVV---TNIDNDHLDYYGNVEALRVAFLEFINK-VPFY 213 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300 + + +D K++ K A+ + S G+ + +I + +T + Sbjct: 214 GCSFLCFEDNVVKDLSKSANK---KYYSYGFSKDYDFYVDRDSIRVEAPITYFTAYHNSE 270 Query: 301 ---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +F PL G V N+L + G+ I +GID A + E L+ V R + + Sbjct: 271 CLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTFEGVGRRLNKL--YDKEIT 328 Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVF 388 ++ DYAH ++ L ++R RII VF Sbjct: 329 LFDDYAHHPTEIKATLSSVRNAYKNRRIIAVF 360 >gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella putrefaciens CN-32] gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella putrefaciens CN-32] Length = 439 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + LFA + + P ++ +TG++GKS+V + V ++ + +G++ A Sbjct: 97 VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220 + P AL LS V +E SS L+ H L+ +A + N+ DH+D + Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 AY AK+RL+ +S +II+ DDA + N+ G + Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H + ++ E L G N L A L A+G+D ++ + Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVIAKVARTF 297 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + R E VG +GG YV+ + +N Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323 >gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4] gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4] Length = 454 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 77/334 (23%), Positives = 128/334 (38%), Gaps = 46/334 (13%) Query: 63 AIAQGAEAIVVSSAYSLQDFSAT-IRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 A A+ A+ IV SSA + + RS TPI+ + + L+ YG +A+ Sbjct: 61 ANARDADVIVTSSAVAKSNPEVVEARSRKTPII---HRAEMLAELMRLKYG------IAI 111 Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 G GK++ S V + GL + +G +++ + RL YL + Sbjct: 112 AGMHGKTTTTSMVASVLAGGGLDPTVVVG--GRVNALGSNARLGNSR---------YLVA 160 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKL--IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 + D+ +KL I TNL R+H+D ++ A F + Sbjct: 161 EA-------------DESDRSFLKLSPILAVVTNLDREHMDAYR-DMADVETAFVEFMDR 206 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 +P DD + ++ R RV++ G ++ + V Sbjct: 207 VPFYGATTACIDDPMLRAILPRVRR---RVMTYGESPDADFQLRMLPKDSDCHAVFEVNT 263 Query: 298 KDF---DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 K F +PG+ V NA A + + +GI + + E LE V RF+ G R Sbjct: 264 KGLLLGPFRLHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVDRRFQVKGV-VR 322 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G + DY H + L+ R GR++V+F Sbjct: 323 GVTVVDDYGHHPTEVRATLQAARECGYGRVLVLF 356 >gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Caldicellulosiruptor owensensis OL] gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor owensensis OL] Length = 455 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 26/293 (8%) Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 SS+ V +E SS L+ + K + G N+ DH++ H T + Y AKMR+FE Sbjct: 156 SSENTIFV-LEISSFQLETIKY--FKPMVGCILNITPDHLNRHMTMENYIKAKMRIFEN- 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 + + ++ D++ +++++ A G ++ + +F K V I + ++ + EG Sbjct: 212 IDETGYTVLNYDNSVTRDLIGLAK--GNVIVFSKNKNQF---KNVVFIE-ENKIYFTFEG 265 Query: 298 KDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 K + + +PGE + NAL A + G+ + L+ V R EFV T Sbjct: 266 KTQEVMRKDEIFIPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHRIEFV-TEI 324 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413 G + Y D T+ + K I S I++ G D+ + G IA + + Sbjct: 325 NGIKFYNDSKGTNT--DAAEKAISAFESP--IILIAGGYDKGESFERFAGLIAKKVKKVF 380 Query: 414 IVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 ++ + +KI +E+ G F N EA+ + E DV++++ Sbjct: 381 LL------GQTKQKIASELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLLS 427 >gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor owensensis OL] gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor owensensis OL] Length = 448 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 79/368 (21%), Positives = 159/368 (43%), Gaps = 45/368 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ S +S+++ +F+ + G++ DGH F+ +A+ GA + + + +R Sbjct: 25 VSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEALQNGAISFISQKEFK------NVR-- 76 Query: 90 TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V +T L AS + K ++ VTG+ GK+S ++ + +++ Sbjct: 77 VPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGKTSTKEYIFNVL------NYKYK 130 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 +F +N + P I L+ + + S+ G + +L I K G Sbjct: 131 TFKNQGNF--NNHIGLPFSI-----LNMPEDTQIAVFEMGMSNFG-EISKLSQIAKPDIG 182 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHNA 263 TN+G HI+ +++ F AK + ++ + + II D + + E+ K Sbjct: 183 VITNIGVAHIENLKSRYNIFLAKSEI-QDGMADDGMLIINNDNDILNLHKGELKK----- 236 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323 R++++G + + K H Q S E ++ + +YN+L A + I Sbjct: 237 --RIITIGIENESHFRAKNVQRH---QNGFSFEVDNYTYFIESFNFHDIYNSLFAIAVGI 291 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381 +GID L+ E + + + RFE + +G +D + +++ M L I +I Sbjct: 292 ILGIDRQLIKEAIRRKERLKRRFEII---QKGSITVIDDTYNASTHSM-LSAIDSICEFD 347 Query: 382 GRIIVVFG 389 G+ I+V G Sbjct: 348 GKKILVLG 355 >gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruminococcus bromii L2-63] Length = 450 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Query: 3 LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62 ++D + + N + + KI V DSR ++ G +F+AI G + DGH FI + Sbjct: 1 MKDFTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEK 60 Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 AQGA + A + P +VV +T + K ++ ++G Sbjct: 61 CFAQGAVCALCEKAPE--------NATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISG 112 Query: 123 TSGKSSVASFVQQI 136 + GK+S + + Sbjct: 113 SVGKTSTKEMLYAV 126 >gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879] gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879] Length = 494 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 79/340 (23%), Positives = 140/340 (41%), Gaps = 44/340 (12%) Query: 108 RLYGKHPEN---------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158 R+Y K N I+A+TG+ GK+S+ +F+ QI Q+ +T Sbjct: 148 RIYAKKAHNKLQQLQNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVA 207 Query: 159 D--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 D + IY+A+A G V L QH I +G H Sbjct: 208 DINQNINATHEIYIAEA-------GARQVGDIKEIAELLQHHYAVIG-------KIGHAH 253 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276 I+Y + + K L + + A + D++Y+ V+ A + + V Y K Sbjct: 254 IEYFKNIETTTKTKFELLYS--TRLTHAFVQKDNSYA-NVLPPQFEANMKKI-VAYPPK- 308 Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 LK + + K ++ ++ F + G F + N VA + +G+D + + + Sbjct: 309 --LKDIESTLEKTSFSLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAV 366 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDR 394 KL +P R + + T ++ +D + N LE + + IR ++ +GR I+V + Sbjct: 367 AKLTPIPHRLQRIDT---AQKVIIDDSFNGN-LEGMSEAIRLASLHNGRKIIVTPGLVEH 422 Query: 395 DQGKRPIMGKIALDLADIAIVTDD-NPRSED-----PEKI 428 D+ + + + DIAI+T D N + D P+KI Sbjct: 423 DEASNIELAQKIDKVFDIAIITGDLNAKILDTHITTPQKI 462 >gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium SWAT-3] gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium SWAT-3] Length = 486 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 46/285 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +AV GT GK++ + V QI +GL +F G + S + RL + S I +A+A Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231 S+L Q + + + +D + G F L + ID+ Y A M Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233 Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + EL+P+ S +I +S++ R N + G QGKF Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275 Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ EGK + D +PG NA A + I +L+ + RF+ Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332 Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 +G G + + DY H +++ ++ R+ R++++F Sbjct: 333 HLGEYETGNGVAMLVDDYGHHPTEVDVTIQAARSGWADKRLVMIF 377 >gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AQ4037] gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio parahaemolyticus AQ4037] Length = 437 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 123/304 (40%), Gaps = 39/304 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL+ +G I A + Sbjct: 110 VVAITGSNGKSTVTDLTGVMAKAAGLT---VGVGGNIGVPALE----------------- 149 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L Q V +E SS L+ +KL A +F NL DH+D ++ Y AK+R+F+ Sbjct: 150 LLEQDVDLYVLELSSFQLETTL--SLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH 207 Query: 237 LLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 A++ DD + EV G + G + + + + + Q+V S Sbjct: 208 ----AELAVVNRDDQETYPEVEMPVVTFGSDEQAYGLE---VDGSRTWLLDHGQRVIASD 260 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 E K L G+ + NALV L A G+D L L+ + R + V N RG Sbjct: 261 ELK-------LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRCQVVADN-RG 312 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI 414 + D T+ + M + T ++V G G D +PI + L L + Sbjct: 313 VKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGKGADFTPLKPIFATLNLQLCCFGL 372 Query: 415 VTDD 418 DD Sbjct: 373 DGDD 376 >gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia baltica ATCC 49814] Length = 478 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 11/119 (9%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 K++ +S DSR + G +FVA+ + DGH ++ AI +GA ++SS Sbjct: 24 KVSGISIDSREVAKGDLFVALK-DLRDGHEYVSSAIEKGAAGALISSDCG---------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + P + VDNT L + A+TG+ GK+SV + QI + G + + + Sbjct: 73 DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVKEMIAQIFRSKGKAHWNV 131 >gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Brachybacterium faecium DSM 4810] Length = 495 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 152/368 (41%), Gaps = 59/368 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + G +F A +G DGH F+ A GA +V+ D +A + P + V Sbjct: 34 DSREVGPGDLFAAFLGEHVDGHDFLDAARTAGAALSLVT------DAAAAAEHSLPAVRV 87 Query: 96 DNTRK----FLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 D+ R +R ++P+ +LAVTG++GK+ + I + + GPT Sbjct: 88 DDVRDALAALARAQLARARQENPQLVVLAVTGSAGKTGTKDLLGTILRSA-------GPT 140 Query: 151 -STISSFAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKL 204 + + SF +N L P + + + ++G+ H++ L + + L Sbjct: 141 VAPVGSF--NNELGLPLTVLQVTGETRFLVLEMGARGIGHIAE------LTEIARPDVSL 192 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 + N+G H+ + A AK L + L P AI+ A+D + V A + Sbjct: 193 V----LNVGSAHLGEFGSVDAIARAKGELVDALAPG-GRAILNAED---RLVAAMAERSA 244 Query: 265 CRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--------LPGEFQ 311 V++ G+ +G + L + + +V + D + P L GE Q Sbjct: 245 APVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGEHQ 304 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-RFEFVGTNSRGGRIYVDYAHTSN--S 368 N L A + G+DSA L+ + G R + + GG + +D A+ +N S Sbjct: 305 AANVLAALTAALMAGVDSASATAALDGATLASGQRMQVL---RAGGALIIDDAYNANPDS 361 Query: 369 LEMILKNI 376 L LK + Sbjct: 362 LRQALKTL 369 >gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC 29799] Length = 463 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V +DSR I G +FV ++G + DGH +I A+ GA A ++ +D + + Sbjct: 27 EISRVETDSRTIHEGSLFVPLIGEQFDGHAYITSALEGGAAA-----CFTQRDRESYLPG 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 I VD+T++ L A K ++AVTG+ GK++ V + Sbjct: 82 KCYIR-VDHTQRALRDLAVWYKKKFDIPVVAVTGSVGKTTTKDMVAAV 128 >gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069] gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069] Length = 489 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 45/285 (15%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +AV GT GK++ S + I GL +F IG ++S + RL T S ++A+A Sbjct: 124 VAVAGTHGKTTTTSLIASIFAEGGLDPTFVIG--GLLNSAGSNARLGT-SRFFIAEADES 180 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231 S+L Q + V + +D + G F NL + ID+ Y A M Sbjct: 181 DASFLHIQPMVAVVTNIEADHMDTY--------GGDFKNLENNFIDFLHNLPFYGLAVMC 232 Query: 232 ---RLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287 + +E++P+ + P + Y +S++ A R + G H K + ++ Sbjct: 233 IDDKTVQEIMPRVTRPTVTYG---FSED-------ADVRAVDFTQSGTKSHFKVIRRDYD 282 Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + + LPG V NAL A + G+ + + L + + RF+ Sbjct: 283 GE----------LEITLNLPGRHNVQNALAAIAVATEDGVSDQAIQKALSEFGGIGRRFQ 332 Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTITSGRIIVVF 388 G G+ DY H + + ++ + R+ R+++V+ Sbjct: 333 MYGDFKVDGKTITLMDDYGHHPSEVMATIEAMRRSWPERRLVMVY 377 >gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Magnetococcus sp. MC-1] Length = 469 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 142/353 (40%), Gaps = 48/353 (13%) Query: 12 PELINQ-LSIFPMQWRERKINEV----SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66 P L+ Q LS + ++ + EV SSD+R +Q G +FVA+ G D +L++ QA+ Sbjct: 9 PALLEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTA 68 Query: 67 GAEAIVVS--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124 GA I+ S A SL P+ VV + ++ A + +TG+S Sbjct: 69 GASGILCSRPPAQSLP---------IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSS 119 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG-VT 183 GK++V + I S ++ G I+ +N + P L+ L+ T Sbjct: 120 GKTTVKEMLGLIVS----SRYRTG----ITRGNLNNHIGLP--------LTLLNCPSDRT 163 Query: 184 HVSVE--ASSHGLDQHRLDGIKLIAGSFTNLGRDHI------DYHQTQQAYFNAKMRLFE 235 H+ +E S+ G H + + G TN+ H+ + + +AK L + Sbjct: 164 HLVLEMGMSAPGEIAHLAELAQPQIGIVTNILAAHVAGFGGGNLVSALRGIAHAKGELLQ 223 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVT 292 LP + A++ A D + + GC +LS G Q + Sbjct: 224 A-LPHDGLAVLPAIDPHLALLQSL---TGCAILSFGPQSSGADVVFTPPSYGDDGMLSTL 279 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 I G+ F P G NA+ A +G+D+A + E L + + GR Sbjct: 280 ILPNGERFALNLPGFGPHLWLNAVAACAAAYGLGLDAAAMQEGLSRFKLQKGR 332 >gi|240168216|ref|ZP_04746875.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium kansasii ATCC 12478] Length = 488 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 17/192 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D++ + +AY E L P + ++ DD + E+ +R+ G RVL Sbjct: 189 TNIESDHLDFYGSTEAYVGVFDSFVERLAPGGA-LVVCTDDPGAAELARRSAELGIRVLR 247 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQVYNALVAAGLC 322 G + +Q+ T +V E +PG NAL A Sbjct: 248 YGSAEPEGAPLAATLLSWEQRGTEAVAHLRLAGERHPRVMRLAVPGRHMALNALGALLAA 307 Query: 323 IAIGIDSAL--VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 I +D+A+ VL+ L V RFE VG R++ DYAH + L +R++ Sbjct: 308 IE--VDAAIDEVLDGLAGFEGVRRRFELVGAVGS-VRVFDDYAHHPTEIGATLAAVRSVL 364 Query: 381 ----SGRIIVVF 388 +GR++VVF Sbjct: 365 QHGGTGRLLVVF 376 >gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 436 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 19/113 (16%) Query: 26 RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85 + +KIN DSR ++ G F+ + G DGH +I AI +GA + ++ Sbjct: 19 KNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYFSEKPLNFKN---- 74 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQ 134 ILV D + + + GKH N ++ +TGTSGK+S + Sbjct: 75 -----GILVKDTYQALVEV------GKHKRNQVRVVIGITGTSGKTSTKELMN 116 >gi|94266852|ref|ZP_01290512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] gi|93452482|gb|EAT03081.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] Length = 524 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%) Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111 DGH P+ A +AIVVS L D A R+ PI+ L+L + L+ Sbjct: 70 DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 ++AVTGT+GKS+V + + ++ Q +G +F G L P YLA Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 Q V +E SS LD + G N+ DH+D + QAY +K Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215 Query: 232 RLF 234 RLF Sbjct: 216 RLF 218 >gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 467 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 90/415 (21%), Positives = 153/415 (36%), Gaps = 70/415 (16%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQ 138 ++A I + P LV + + L G ++ N + ++GT GK++ S + +I Sbjct: 75 YTAAIHPDNPELVAAKKAGLPIISRAGLLGEIMRNYRNAINISGTHGKTTTTSMIAEILL 134 Query: 139 RSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + PT T+ +D N S ++A+A Y +S + ++E Sbjct: 135 EADWD-----PTVTVGGMMRDIGGNIRVGQSENFIAEACEYTNSFLSFYPTIEV------ 183 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAY 252 N+ DH+D+ + + R F E LP+ +I D Y Sbjct: 184 -------------VLNVEADHLDFFKDLED-IRHSFRRFTEKLPENGLLVINRDIPHYEY 229 Query: 253 SKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FP 305 E ++ CRVL+ G Y FI + T+ GK+ + Sbjct: 230 FTEGLR------CRVLTYGHDRDADYTANFISYDH----YAHPSYTLFERGKELGPISLG 279 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365 + GE +YN+L A + A+GI+ + L + RF+ G G I DYAH Sbjct: 280 VTGEHNIYNSLSAIAVGRALGIELETIRRALHRFQGTDRRFQKKGEVC-GFTIIDDYAHH 338 Query: 366 SNSLEMILKNIRTITSGRIIVVFG------CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419 + ++ + ++ V F D + + LADI + N Sbjct: 339 PQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFAGALSQADEIVLADIYAAREKN 398 Query: 420 PRSEDPEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468 E +R + ++ IP F RIE +E L D+L+ G G Sbjct: 399 TVGVSSEDLRRHMLEQNTNVYYIPDF----QRIEDF--LMERLQPGDLLITMGAG 447 >gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Roseobacter sp. MED193] Length = 469 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 7/103 (6%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 + K++ +S D+R +Q G +FVA+ + DGH F+ QA+ +GA A +V+ + Sbjct: 21 DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALVTHRPD------GV 73 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129 ++ P+L+V++ + L + ++A+TG+ GK+S Sbjct: 74 AADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTST 116 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] gi|300074270|gb|ADJ63669.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1] Length = 857 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 39/303 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AV GT+GK++ + + ++GL ++G T+T + R T A + Sbjct: 472 VVAVAGTNGKTTTVRLITHLLAKTGL---RVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHI--DYHQTQQAYFNAKMRL 233 L V +E + G+ + L + TN+G DH+ Y T + K + Sbjct: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVI 588 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---- 289 E + P + + AD +K A C + H + A H Q Sbjct: 589 VENVAPTGTAVLNAADPMVAKMA------ASCPGAVTFFALDPTH--PIMATHRAQGHRI 640 Query: 290 -----QVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGID----SAL 331 ++ +G F+ L G FQV N + + G A+ +D + Sbjct: 641 VYRDGDAIVAAQGS-FEKRLKLSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGA 699 Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391 + + PGRF + +G + DY H ++++ ++K + ++ + R VV Sbjct: 700 LASFISDSGTAPGRFNLF--DYKGATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGA 757 Query: 392 GDR 394 GDR Sbjct: 758 GDR 760 >gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC 43541] Length = 779 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 9/182 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268 TN+ DH+D++ T + A R F + + A++ + E++++ A CRV+ Sbjct: 186 TNVEDDHMDHYGTMEKIIEA-FRTFVDQTDADGTAVL----CFENEILRQIACETPCRVV 240 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFD-FLFPLPGEFQVYNALVAAGLCIAIG 326 S + + H + E G + L +PG V NAL + G Sbjct: 241 SYAIDAEADYRAADMETHGSVISFTAFERGAEMGRVLLNIPGRHNVLNALACIAVARLAG 300 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 ++ + L + H RF+ G RG + DYAH + L R GR+I Sbjct: 301 VEFPEIRRALAQFHGAKRRFQTKG-KERGVWVVDDYAHHPTEIAATLAAARQTNPGRLIC 359 Query: 387 VF 388 VF Sbjct: 360 VF 361 >gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843] gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843] Length = 877 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 30/323 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ILA+TGT+GK++ + + IC+++G +G T+T + D + A Sbjct: 490 ILAITGTNGKTTTSRLISHICRQTGKV---VGFTTTDGVYIDDYLVEKGDNTGPYSASMI 546 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235 L V +E + G+ + L + G N+ DH+ AK++ + Sbjct: 547 LKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVA 606 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFI--HLKK--VCAIHNKQ 289 E++ E A++ ADD + + A RV S+ I H+++ + AI+ Sbjct: 607 EVVSAEGYAVLNADDPLT---VGMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENG 663 Query: 290 QVTISVEGK---DFDFLFPLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340 ++I +EG+ + +P F + NAL A GID L+ + + Sbjct: 664 YLSI-LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFK 722 Query: 341 V----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGR +DYAH E + + SG + V G GDR Sbjct: 723 PSVAQTPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRD 779 Query: 397 GKRPIMGKIALDLADIAIVTDDN 419 ++GK++ + D IV +DN Sbjct: 780 DDLILLGKLSALMFDRIIVKEDN 802 >gi|146329525|ref|YP_001209321.1| folylpolyglutamate synthase [Dichelobacter nodosus VCS1703A] gi|146232995|gb|ABQ13973.1| folylpolyglutamate synthase [Dichelobacter nodosus VCS1703A] Length = 422 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 98/407 (24%), Positives = 156/407 (38%), Gaps = 72/407 (17%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLS--SF-----------------QIGPTSTISS 155 E+I+ V GT+GK S ++V+ IC G+S SF + T ++ Sbjct: 46 EHIITVAGTNGKGSCVAWVEAICLAHGISVASFTSPHVIDYRERIRFNDHMVRETELCAA 105 Query: 156 FAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGS 208 F +R +T + A A YL +Q H++V G RLD + L+ A Sbjct: 106 FEAIDRARGTITLTFFEWSALAAFYLMAQRPPHIAVLEVGLG---GRLDAVNLLDADAVI 162 Query: 209 FTNLGRDHIDY---HQTQQAYFNAKMRLFEEL--LPKESPAIIYADDAYSKEVMKRAHNA 263 F+ +G DH D+ H + A A + ++ + E P + AD +KR Sbjct: 163 FSRIGLDHTDWLGDHIDKIAAEKAGVLRAKQWVAMAAEQPTNVLAD------AVKRMQAQ 216 Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----GEFQVYNALVAA 319 C +F ++ + F PLP GE Q+ + AA Sbjct: 217 LCPYRVESQNDRF-----------------HIQWAHYHFDLPLPTLLRGEHQLCHC-AAA 258 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 + +A D L E +++ F + + RI +D AH ++S E IL + T Sbjct: 259 AVILAHWFD--LKPELMQRAVKEAHNFARLMVKNTRPRIVIDVAHNADSAE-ILAHFLTT 315 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIP- 437 +F CG RD+ I ++ + R D P + GIP Sbjct: 316 LDAPERFLFVCGMLRDKDHDAIFKQLQSLAQHWFLGGLTGARGTDAPTLAMHALAAGIPE 375 Query: 438 -GFIEKGNRIEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEK 480 + I+A R A + + QD +VV G H TV + + EK Sbjct: 376 NAITTCPDVIQAFRAAQQKAHAQDTQDTIVVMGSFH-TVQQILSAEK 421 >gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 499 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 17/194 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265 TN+ DH+D H A F F L K ++ ADDA +++V R G Sbjct: 197 TNIEPDHLD-HWGSAAAFEQAFVNFTGRLRKGGALVLCADDAGVKRLAEQVSARGDADGP 255 Query: 266 RVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVEGKDF---DFLFPLPGEFQVYNA 315 RV+S G+ +H ++ + QVTI+ G+ + G+ + NA Sbjct: 256 RVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGKHMLLNA 315 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 A G +G D + + L R + VG G RIY DY H + L+ Sbjct: 316 GGALGAAYVLGADLSQFIAALRTFSGADRRMQPVGERD-GVRIYDDYGHHPTEIAATLQA 374 Query: 376 IRTITS-GRIIVVF 388 R + GR++V F Sbjct: 375 ARDLAGKGRLLVCF 388 >gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 486 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 79/326 (24%), Positives = 141/326 (43%), Gaps = 32/326 (9%) Query: 20 IFPMQWRE------RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73 + P+Q R R +S D+R ++ +F AI G+ DGH ++P A A+GA A VV Sbjct: 22 VTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAKGAMAAVV 81 Query: 74 SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133 A++ + + ++ P+ VV L + ++AVTG+ GK+S + Sbjct: 82 DEAHADR-----LAAHGPLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTKEAL 136 Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 + + + G S +S A N P+ LA+ + + G+ + + +H Sbjct: 137 RLVLTQGG---------SVHASVASYNNHWG-VPLTLAR-MPRDARFGIFEIGM---NHP 182 Query: 194 LDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 + L G ++ T + H++Y + +A +AK +F L+P AII+ D Sbjct: 183 GEITPLVGMVRPHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPG-GVAIIHRDIPQ 241 Query: 253 SKEVMKRA-HNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310 + + + A H+ + S G K L + + V S++G+ + PG Sbjct: 242 FERLAEAARHSPAGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRH 301 Query: 311 QVYNA---LVAAGLCIAIGIDSALVL 333 N+ L+AA C D+A VL Sbjct: 302 FAENSLAVLLAAKACGVPLEDAAAVL 327 >gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. Tu6071] gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces sp. Tu6071] Length = 454 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 114/276 (41%), Gaps = 43/276 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +G + +G Sbjct: 83 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 129 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L+ + ++VE SS+ L H ++ + + NL DH+D+H + Sbjct: 130 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 182 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVL----------SVGY 272 AY K R++E A +Y + D ++E+++ A GCR + +G Sbjct: 183 AYAADKGRVYE----GNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGV 238 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + + QQ E D D P V NAL AA L A G+ + V Sbjct: 239 VEGYL-VDRAFVPDRAQQAQELAEVADVD----PPAPHNVANALAAAALARAFGVPATAV 293 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 E L P R E V T G YVD + +N+ Sbjct: 294 REGLRAFRPDPHRIEHVATID--GVSYVDDSKATNT 327 >gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Ethanoligenens harbinense YUAN-3] Length = 456 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 99/481 (20%), Positives = 186/481 (38%), Gaps = 76/481 (15%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + +VS+D+R I+ G +F+A+ G + DG+ ++ A +GA + Sbjct: 25 RCTDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIALAERPC----------P 74 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P+++VD+ L A+ + ++ VTG+ GK+S + + ++ + G Sbjct: 75 GWPVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEG 134 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIA 206 +N + P ++ L V + + A L Q I +I Sbjct: 135 NL--------NNLIGMPMSVF---GLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVI- 182 Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+G HI+ +Q+ AK+ + + + P I+ DD ++ Sbjct: 183 ---TNIGVSHIEMLGSQENILKAKLEILDGMRPG-GKLILNGDDP----LLAGVQTDKAE 234 Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---------LPGEFQVYNALV 317 V++ G + CA + ++V EG F +P + G+ VYNAL Sbjct: 235 VITYGIE------NTGCA-YTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALA 287 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR------GGRIYVD--YAHTSNSL 369 A + +G +E + G ++ T R GG +V+ Y + +S+ Sbjct: 288 AFAVGRVLG---------MEPDTIAAGFLQYAPTGYRQKIERVGGVTFVEDCYNASPDSM 338 Query: 370 EMILKNIRTI-TSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424 +RT+ +GR + V G R + + A + D+ +N R Sbjct: 339 RSAFDVLRTVQKTGRRLAVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQ 398 Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV-TNGEKKM 482 +A G F +K +A+ +ML + D ++ G +G I+ T GE+ Sbjct: 399 EGYTQAGGTQGAH-FTDKAALTDAL---CQMLREGDAVLFKGSRGMRLEEIIQTAGERWT 454 Query: 483 S 483 S Sbjct: 455 S 455 >gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 454 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 11/111 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 +N++ DSR+I G +F+ + G + DGH FI A GA A FS S Sbjct: 19 LNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT----------FSERAISG 67 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 P ++V+N A K +++AVTG++GK+S ++ + ++ Sbjct: 68 RPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKA 118 >gi|15889380|ref|NP_355061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium tumefaciens str. C58] gi|30316074|sp|Q8UDM6|MURD_AGRT5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|15157230|gb|AAK87846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium tumefaciens str. C58] Length = 469 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 25/150 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I Q SG + Q+G + + D KA + Sbjct: 117 IAITGTNGKSTTTALIAHILQSSGRDT-QLGGNIGTAVLSLDP----------PKAQRFY 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D I AG NL DH+D H T Q Y + K E L Sbjct: 166 V--------VECSSYQIDLAPT--INPTAGILLNLTPDHLDRHGTMQHYADVK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 + AI+ DD++S + R AG +V Sbjct: 212 VAGSGTAIVGVDDSHSTLIADRIERAGVKV 241 >gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon 786 str. D14] Length = 458 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 25/193 (12%) Query: 207 GSFTNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G TN+ DH+ D+++ ++AY ++ ++ P + A++ DD +E++ R Sbjct: 177 GVVTNIEADHLENYGGDFNRLKEAY----VQFLNQIKP-DGKAVVCGDDPNIRELLPRVQ 231 Query: 262 NAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQVYNA 315 + + Y + I L C VT + D + +PG VYNA Sbjct: 232 SPTITYGIETNCDYTAREIELGDRC-------VTFKMYQGDRELGTVELSVPGRHNVYNA 284 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 + +C+ GI V++ L H RF+ +G + G I DYAH ++ + Sbjct: 285 MATVIVCMEAGIPFDEVVKALRHFHGAKRRFQVLGEKN-GILIIDDYAHHPTEIQATIAA 343 Query: 376 IRTITSGRIIVVF 388 + T RII VF Sbjct: 344 AKA-TGKRIIAVF 355 >gi|94269090|ref|ZP_01291365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] gi|93451350|gb|EAT02218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] Length = 524 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%) Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111 DGH P+ A +AIVVS L D A R+ PI+ L+L + L+ Sbjct: 70 DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 ++AVTGT+GKS+V + + ++ Q +G +F G L P YLA Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 Q V +E SS LD + G N+ DH+D + QAY +K Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215 Query: 232 RLF 234 RLF Sbjct: 216 RLF 218 >gi|94264633|ref|ZP_01288416.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] gi|93454928|gb|EAT05169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [delta proteobacterium MLMS-1] Length = 524 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 37/183 (20%) Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYG 111 DGH P+ A +AIVVS L D A R+ PI+ L+L + L+ Sbjct: 70 DGH--SPELFA-AVDAIVVSPGVPL-DIPALKEAARAGVPII------GELALAPAYLH- 118 Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 ++AVTGT+GKS+V + + ++ Q +G +F G L P YLA Sbjct: 119 ---TPVIAVTGTNGKSTVTTLIGELLQAAGYKTFVGG------------NLGVPLAQYLA 163 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 Q V +E SS LD + G N+ DH+D + QAY +K Sbjct: 164 ------GPQEADWVVLEVSSFQLDTA--GAFRPQIGVLLNISPDHLDRYPDYQAYAASKW 215 Query: 232 RLF 234 RLF Sbjct: 216 RLF 218 >gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf. griseus XylebKG-1] gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf. griseus XylebKG-1] Length = 472 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 26/160 (16%) Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170 G+ P LAVTGT+GK++ + I + +GL + +G + L Sbjct: 109 GRKPAPWLAVTGTNGKTTTVRMLASILRAAGLRTEAVGNIG----------------VSL 152 Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230 A+ + V ++VE SS+ L H ++ + + NL DH+D+H + +AY K Sbjct: 153 LDAVVGETEYDV--LAVELSSYQL--HWAPSLRAHSAAVLNLAPDHLDWHGSMEAYAADK 208 Query: 231 MRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 R++E + A +Y AD A V + GCR + Sbjct: 209 GRVYE----GNTVACVYNVADPATEDLVREADVEEGCRAI 244 >gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor owensensis OL] gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor owensensis OL] Length = 455 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/365 (19%), Positives = 145/365 (39%), Gaps = 55/365 (15%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 G E ++ ++A S +D + + L + +FL L K +N++A++GT G Sbjct: 59 NGDETVIYTAAIS-KDNPELLAAKRMNLKIYERAEFLGLLM-----KDFKNVIAISGTHG 112 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGV 182 K++ S + I +++ + PT + +F + N + + +A Y+ S Sbjct: 113 KTTTTSMIGYILKKANYN-----PTVLVGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLK 167 Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242 + ++ G N+ DH+DY + + N+ + F + +P Sbjct: 168 FNPTI-------------------GVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPASG 207 Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--------IHNKQQVTIS 294 I DD K+++ N +S + C+ +N ++ Sbjct: 208 FLIANCDDKNVKDIISEL-NTQIICISTKEKTDIFADNISCSDGYYEFDVKNNNDKILAH 266 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 ++ +PG VYNAL A + +G++S + + + R E G Sbjct: 267 IK-------LNIPGFHNVYNALAAFAVASKLGVESITIEHAIAEFCGASRRLEKAG-EFD 318 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADI 412 G +Y DYAH ++ L ++ ++ G++ +F + ++ + A L LAD Sbjct: 319 GICLYDDYAHHPTEIKASLNTLKKLSQGKVFAIF--QPHTFSRLKNLLNEFAESLSLADK 376 Query: 413 AIVTD 417 I+TD Sbjct: 377 VIITD 381 >gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi SZ] gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi SZ] Length = 446 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 + N+ DH+D + + QAY NAK+R+FE + A++ DD V + A + + Sbjct: 180 AALLNITEDHLDRYPSYQAYINAKLRIFENQTADDF-AVVNRDDEL---VWQAAQSLKAQ 235 Query: 267 VLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + +G F ++ H+ Q+++I G F L G + N + A Sbjct: 236 LFPFSRRHELTEGIFSREGELLFRHHGQELSIPTAG------FRLQGVHNLENIMAALAC 289 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349 C+ +G LE L + + R EFV Sbjct: 290 CLLLGCQRETSLELLNRFEALHHRMEFV 317 >gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. HGF2] Length = 462 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 6/122 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E KI V DSR + G +++ I G +GH ++ QAI GA A++ + A Sbjct: 27 EEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNGARAVL------WERREANP 80 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 +++VD+T L A + ++ VTG++GK+S + + + ++ Sbjct: 81 PKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKDILASVLAKHFITQKT 140 Query: 147 IG 148 +G Sbjct: 141 LG 142 >gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia TBF 19.5.1] gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia TBF 19.5.1] Length = 449 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 81/366 (22%), Positives = 154/366 (42%), Gaps = 70/366 (19%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+ +TGT+GKS+V + V I ++SGL +F G L TP +S Sbjct: 110 IVGITGTNGKSTVTTMVGHIAKKSGLKTFIGG------------NLGTP-------LISS 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE- 235 ++ + +V VE SS L S N+ +DH+DYH+ + Y AK+++ E Sbjct: 151 INERFDVYV-VEVSSFQLTWFGKKEKYFHLSSILNIAQDHLDYHRDMREYALAKLKIIEL 209 Query: 236 ---------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286 E+L ++ D K+++ + + F LK I Sbjct: 210 TSGSSIINSEILENFGDLLV---DKTKKQIIPFSTR----------KDSFFCLKD--GIM 254 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +++IS++ +F PG NA + GL +GI LE L+ + R Sbjct: 255 RLHKLSISLDSLNF------PGIHNQENAAITLGLAQFLGIHVHDALEKLQDYAFLDHRM 308 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406 + G G +++ + +N+ ++ + ++I++ G ++ + P++ KI+ Sbjct: 309 QKCG--QINGVTFINDSKATNA-HAVINALENFDLEKVIIIL-SGKEKREDYTPLIKKIS 364 Query: 407 LDLADIAIVTDDNPRS--EDPEK--IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462 I D+ +S E +K I +++H I EA++ A+E+ D++ Sbjct: 365 --RVKHIIFLGDSLKSLIERLKKKGITYDVVHTID---------EALKKAVELSKAGDIV 413 Query: 463 VVAGKG 468 + + G Sbjct: 414 LFSPGG 419 >gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA] Length = 452 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI+ +S++S I +FV I+G + D H+FIP A+ +G + + Sbjct: 25 KIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGGACLTQEHTEA--------SG 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 N P + V +T + A+ K I+ VTG+ GK++ + + + Sbjct: 77 NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREMIAHVLK 126 >gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio proteoclasticus B316] gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio proteoclasticus B316] Length = 464 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 38/333 (11%) Query: 65 AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVT 121 Q AE I + + ++A + + P + L ++L G K + +AV Sbjct: 60 GQKAENIRNAGDIDVVVYTAAVHPDNPEFMAAKEANLPMLTRAQLLGQIMKQYKLPVAVA 119 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLS 178 GT GK++ S + +I + PT +I +D N S ++ +A Y + Sbjct: 120 GTHGKTTTTSMLSKILLEA-----DTDPTLSIGGIFKDIGGNIRVGQSEYFVTEACEYTN 174 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 S +S I +I +N+ DH+D+ + R F +LL Sbjct: 175 S----FLSF-----------FPKISII----SNIDADHLDFFKDLDD-IRHSFRKFAQLL 214 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-- 296 P + +I D +E+ + C +++ G + F + + + + + Sbjct: 215 PADGTLVINGDIDNVEEITD---SLPCTIITYGSRDSFDYYPTDITYNEQGNPSFTAHLP 271 Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ D +PG VYNAL + + GI ++ L RFE+ G G Sbjct: 272 GGETLDISLAVPGIHNVYNALASIAVANLFGISKDNIVAALSAFGGTSRRFEYKG-EIGG 330 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 I DYAH ++ L + +I VF Sbjct: 331 VTIIDDYAHHPTEIKATLTAAQNYPHNKIWCVF 363 >gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10] gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10] Length = 458 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 43/329 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA+ +V S+A S + I V+ + L R +AV G G Sbjct: 62 QGADLVVYSTALSKDNVERVEAEKLNIPVLHRAQMLARLLNER-------KGVAVAGAHG 114 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ +S + + + G+ +F IG I + + + + +G H Sbjct: 115 KTTTSSMIALVMEECGVDPTFIIG--GEIMNVGTNAK----------------AGEG-EH 155 Query: 185 VSVEA-SSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V EA S G L H G+ L N+ DH++ ++ A F + + Sbjct: 156 VVAEADESDGSFLQYHPWLGVVL------NIEADHLENYEGDFNRLKAAYVQFLSQIKAD 209 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300 A++ ADD + ++ + C V + G + + ++ T+ G + Sbjct: 210 GTAVVCADDNNIQAILP---DLKCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMEL 266 Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG+ VYNA+ C+ GI ++E + K + RF+ +G + G + Sbjct: 267 GTVELSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKFNGAKRRFQVLG-EAEGILVI 325 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388 DYAH +E + + T RII VF Sbjct: 326 DDYAHHPTEIEATISAAKA-TGKRIIAVF 353 >gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Clostridium sp. M62/1] Length = 480 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 35/247 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 +S DSR +FV ++G K+DGH FI A+ QGA A+ S + P Sbjct: 33 ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 92 Query: 92 --ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---- 145 + VD+TR+ L + + + ++ +TG+ GK++ V +G F Sbjct: 93 AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALS-AGFHVFKTPA 151 Query: 146 ----QIGPTSTISSFAQDNR-------LTTPSPIYL-----AKALSYLSSQGVTHVSVEA 189 Q+G T+S + + ++ P + + A ++ +++ GVTH+ Sbjct: 152 NHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLG 211 Query: 190 SSHGLDQHRL---DGIKLIAGSFTNLGRDHIDYHQTQQA----YF----NAKMRLFEELL 238 + + + +L DG++ F N D + + ++ YF NA R + L Sbjct: 212 TRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENADYRAVDIRL 271 Query: 239 PKESPAI 245 + P+ Sbjct: 272 ERGCPSF 278 >gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sulfurihydrogenibium sp. YO3AOP1] Length = 436 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 26/147 (17%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +KIN DSR ++ G F+ + G DGH +I AI +GA + ++ Sbjct: 21 KKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKGAVGYFSEKPLNFKN------ 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQR---- 139 ILV D + + + GKH N ++ +TGTSGK+S + + Sbjct: 75 ---GILVKDTYQALVEV------GKHKRNQVKAVIGITGTSGKTSTKELMNFVLSNLAST 125 Query: 140 ---SGLSSFQIGPTSTISSFAQDNRLT 163 G + +IG T+++ ++ LT Sbjct: 126 YATQGNYNNEIGVPLTLANIPENIDLT 152 >gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753] gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753] Length = 473 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 74/320 (23%), Positives = 128/320 (40%), Gaps = 59/320 (18%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTS 124 AEA+V ++A ++ + P L + +L S + G + + +AV+GT Sbjct: 80 AEAVV---------YTAAVKQDNPELAAAREKGIPTLERSVMLGIVCRRYADAVAVSGTH 130 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSS-- 179 GK++ + + QI +SG PT+ I F N S I + +A Y+ + Sbjct: 131 GKTTTTAMLTQILVQSGKD-----PTAIIGGKLPFLGGNSRVGSSEIMVCEACEYVDTFL 185 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-L 238 Q VS+ N+ DH+DY + N ++ F + L Sbjct: 186 QLTPAVSI---------------------ILNIDADHLDYFKD----LNNIIKSFHQFAL 220 Query: 239 PKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 ++ DDA +++ + A G + + Y G K VC ++ ++ Sbjct: 221 QTTKRLVVNGDDANTQKAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVC-----EEFSLM 275 Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 G+ + + +PGE +YNAL AA +G+ + + L V RFE +G N Sbjct: 276 YRGEKLAEIVLSVPGEHNIYNALAAAAAAHTLGVSPEDIAKSLHAFTGVHRRFEVLG-NP 334 Query: 354 RGGRIYVDYAHTSNSLEMIL 373 G + D+AH L L Sbjct: 335 SGIMVADDFAHHPTELSATL 354 >gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium HP15] Length = 446 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GK++V + V ++ + +G + A + TP AL Sbjct: 111 IVAITGSNGKTTVTTLVGEMAKAAG------------RNVAVGGNIGTP-------ALDL 151 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L QG +E SS L+ D + +A + NL DH+D + + AYF AK R+F Sbjct: 152 LG-QGADLYVLELSSFQLETT--DELNALAATVLNLSDDHMDRYPNKMAYFQAKQRIFRG 208 Query: 237 LLPKESPAIIYADDAYSKEVMK 258 AI+ DDA S + + Sbjct: 209 C----KNAIVNLDDALSTPMAR 226 >gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis CPHL_A] gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis CPHL_A] gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium tuberculosis CPHL_A] Length = 494 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 33/204 (16%) Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268 TN+ DH+D++ + +AY A F E + ++ DD + +RA G RVL Sbjct: 188 ITNIESDHLDFYGSVEAYV-AVFDSFVERIVSGGALVVCTDDPGGAALAQRATELGIRVL 246 Query: 269 SVG-------------YQ----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311 G +Q G H++ + Q + +PG Sbjct: 247 RYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRV--------MRLSVPGRHM 298 Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNS 368 NAL A + IG + VL+ L V RFE VGT G R++ DYAH Sbjct: 299 ALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTE 358 Query: 369 LEMILKNIRTI----TSGRIIVVF 388 + L R + GR +VVF Sbjct: 359 ISATLAAARMVLEQGDGGRCMVVF 382 >gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus anthracis str. A2012] Length = 252 Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K F E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ +A+ GA Sbjct: 13 KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 70 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + +Y + PI+ VD+T L A + ++ +TG++GK++ Sbjct: 71 IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 124 Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162 V V+ I + + G + QIG TI +D + Sbjct: 125 VKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 165 >gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2] gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2] Length = 459 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/342 (21%), Positives = 143/342 (41%), Gaps = 52/342 (15%) Query: 56 GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115 GH P+ IA GA+ +V S+A S + I + ++ L R Sbjct: 55 GH--TPEHIA-GADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLARLLNER------- 104 Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKA 173 +AV G GK++ +S + + +R + I G + + + A+ + Sbjct: 105 KGIAVAGAHGKTTTSSMIALVMERCNVDPTYIIGGEITNLGTNAKAGK------------ 152 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI-----DYHQTQQAYFN 228 S+ V + E+ L H GI TN+ DH+ D+++ + AY Sbjct: 153 -----SEFVVAEADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAY-- 199 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 ++ ++ P + AI+ ADD +E++ + RV++ G + + ++ + ++ Sbjct: 200 --VQFLGQIQP-DGAAIVCADDQNIQEMLPQLQ---TRVITYGIEHEADYMATDIQLGDR 253 Query: 289 Q-QVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + T++ +G + +PG+ VYNA+ C+ GI + + + H RF Sbjct: 254 RLSFTMNRKGTALGTIELSVPGKHNVYNAMATVISCLEAGIPFEQIAATIVEFHGAKRRF 313 Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 + +G + + DYAH + L+ ++ T RI+ VF Sbjct: 314 QVIG-DLHDVLVVDDYAHHPTEIIATLQAAKS-TGKRIVAVF 353 >gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium aromaticivorans DSM 12444] gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium aromaticivorans DSM 12444] Length = 443 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 62/338 (18%) Query: 42 AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPI---LVVDN 97 AG V + N+E+ P++ +G+ I + L F+ + S P+ + D+ Sbjct: 30 AGGADVTVWDNREE-----PRSAFEGSCTIADPLSIDLTGFAGVVVSPGVPLNRHPIADH 84 Query: 98 TRKF-------LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 R + LFA P ++ +TGT+GKS+ V IC +GL + ++G Sbjct: 85 ARAAGVPVIGDIELFAQARADLPPHRVVGITGTNGKSTTTMLVHHICAAAGLPA-RLGGN 143 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + Q+ P P +G +V +E SS+ +D + + + Sbjct: 144 IGLPILGQE-----PLP------------EGGVYV-LELSSYQIDLTQ--SLACDVAALI 183 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 NL DH+D + Y +K RLF + + A+ D ++ E+ + A S Sbjct: 184 NLSPDHLDRYDGFAGYAASKARLF-AMQRADQHAVFGCGDEHTLEIAREA--------SA 234 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDS 329 + F+H+ + A+H + + +P L G + NA +A + +GI Sbjct: 235 THDTGFVHVVQPSALHGQLE-------------WPSLQGPHNLQNAAIAVEIARQLGIAE 281 Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + L +P R E V + G ++V+ + +N Sbjct: 282 DIWRSALASFVGLPHRMERVAEAN--GVLFVNDSKATN 317 >gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae R3021] gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Haemophilus influenzae 22.4-21] Length = 399 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 112/287 (39%), Gaps = 30/287 (10%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123 ++QGA A+VV Q+ S+ + P LVV +TR L A L K +A+TG+ Sbjct: 1 MSQGALALVVQ-----QENSSIL---VPQLVVKDTRIALGELAKWLREKINPRTVAMTGS 52 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 SGK++V I Q + S + T+ +F D P+ L L Sbjct: 53 SGKTTVKEMTASILQHTAADSEAVLFTN--GNFNND----IGVPLTL---LRLTEKHRFA 103 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 + + A+ + ++ A N+ H++ + AK ++ L K Sbjct: 104 VIELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGL-TKNGV 162 Query: 244 AIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 AII A+ D + KE+ A + GK +K V T+ + Sbjct: 163 AIINAEHNHLDIWQKEISNHAIQY--------FNGKDYSVKNVQGNEQGSTFTLVSPQGE 214 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 D P GE V NAL A L + +G A V LE+ V GR Sbjct: 215 IDISLPYLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRL 261 >gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1] gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [butyrate-producing bacterium SSC/2] Length = 452 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 KI+ +S++S I +FV I+G + D H+FIP A+ +G + + Sbjct: 25 KIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEGGACLTQEHTEA--------SG 76 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 N P + V +T + A+ K I+ VTG+ GK++ + + + Sbjct: 77 NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREMIAHVLK 126 >gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Paenibacillus polymyxa E681] Length = 467 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/378 (21%), Positives = 152/378 (40%), Gaps = 46/378 (12%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 E+ + V +DSR Q+ +FV +VG + DGH ++ Q +++ + A A+ Q Sbjct: 23 EQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEASAA-----AFLWQKNHGAP 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQR 139 S I V D L A+ L + +++ +TG++GK++ V ++ + Sbjct: 78 PSENAIEVEDTLEALQHLAAAYLR-ETGVSVVGITGSNGKTTTKDIVNALLGTTFKVHKT 136 Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G + IG T+ S QD + + L +S G + + A+ D Sbjct: 137 EGNYNNHIGLPLTVLSMPQDTDI-----LILEMGMS-----GRGEIRLLANIAQPD---- 182 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMK 258 + +I TN+G H+ ++ AK+ + L P +IY D+ +V+ Sbjct: 183 --VAII----TNIGESHLLQLGSRAEIARAKLEITSGLKP--GGLLIYNGDEPLLSQVLA 234 Query: 259 RAHNA---GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315 + G ++ + G + + I+ + F PL G+ V N Sbjct: 235 ESETVKPEGLKLFTFGLATGNDDYPTEITSDGEGSLFITAQSGKEAFRLPLLGQHNVVNG 294 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375 L A + +D+ + + L L + R E V N G ++ A+ ++ M Sbjct: 295 LAALAVARHFNVDADHIRKGLSSLKLTGMRIEVV--NCPNGLTVLNDAYNASPASMKAA- 351 Query: 376 IRTI----TSGRIIVVFG 389 I+T+ T GR + V G Sbjct: 352 IQTLSAYKTDGRKVAVLG 369 >gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens DM4] Length = 487 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/387 (22%), Positives = 146/387 (37%), Gaps = 56/387 (14%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + S D+R ++ G +F AI G DGH F+ A+ + V + ++F Sbjct: 25 RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAAL-EKGAGAAVVAEARAKEFEGA-- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+L V + L A R G + I+AVTG+ GK+ ++ + G Sbjct: 82 --GPVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAVTGSVGKTGTKEALRHVLSAQGA 139 Query: 143 SSFQI-------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + + G T++ +D R GV + + +HG + Sbjct: 140 THASVASYNNHWGVPLTLTRMPEDTRF------------------GVFEIGM---NHGAE 178 Query: 196 QHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 L ++ T + HI++ ++ A +AK +F L P A+I D+ + Sbjct: 179 ILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYE 237 Query: 255 EVMKRAHNA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPG 308 ++ A + RV++ G VCA I + V++ +V G + PG Sbjct: 238 RLLAHAQASRAGRVITFGEH----EAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPG 293 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSN 367 N+L A+G D A L L GR E G + VD ++ +N Sbjct: 294 RHVAMNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNAN 353 Query: 368 SLEM-----ILKNIRTITSGRIIVVFG 389 + L I T GR I V G Sbjct: 354 PASIRAALATLAGIDTGAKGRRIAVLG 380 >gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylotenera mobilis JLW8] Length = 450 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 95/381 (24%), Positives = 160/381 (41%), Gaps = 54/381 (14%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + V SDSR+I AG +FVA+ G DG+ F +A+ GA A++VS A S+Q Sbjct: 21 QFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDA-SVQA------- 72 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P +VV +TR L A K ++AVTG++GK++ + I LS Sbjct: 73 -EPRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAI-----LSVVAGA 126 Query: 149 PTSTISSFAQ-DNRLTTP-SPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLI 205 S +++ +N + P + + + A Y + G+ H+ +D + I Sbjct: 127 KASVHATYGNLNNDIGVPLTLLKMQPAHQYAVVEMGMNHLG-----------EIDYLTHI 175 Query: 206 A----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 A N G HI +++ AK +F L + A+I AD Y+ ++ Sbjct: 176 AQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGL-KSDGVAVINADSDYA--YYWKSL 232 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-------VTISVEGKDFDFLFPLPGEFQVYN 314 N ++++ G LK + + Q V ++ + + GE + N Sbjct: 233 NPHRKIVTFG-------LKNPADVSARYQENDGYASVVLATASDEVSVQLNVQGEHNISN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMIL 373 AL A A+G+ + L V GR E G N G + +D + +N M Sbjct: 286 ALAAGATAYALGVSLNDIGRGLASFTGVYGRLERKAGIN---GAVVIDDTYNANPDSMKA 342 Query: 374 K-NIRTITSGRIIVVFGCGGD 393 N+ +G+ I+V G G+ Sbjct: 343 AINVLAKLAGKKILVLGDMGE 363 >gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens DSM 20476] gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens DSM 20476] Length = 464 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 105/279 (37%), Gaps = 27/279 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--------AYSKEVMKRAH 261 TN+ DH+D++ F +P E +++ DD A +K V Sbjct: 180 TNVEPDHLDHYTGGIDEIRDTFAKFMSSVPDEGACVVFGDDPELVRIARASAKRVYTYGL 239 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 G ++ GY K I ++ + VT +++ PG NA G+ Sbjct: 240 GEGNDIVVSGYSTKGISSTFDLSMPDGSNVTCTLKKN--------PGLHNALNAAGILGV 291 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381 A+G+D A E + V RF+ VG + G + DYAH ++ L + Sbjct: 292 VFALGLDVAAAAEGIADYTGVRRRFDLVG-EAAGVTVVDDYAHHPTEIKATLSAAAGLDF 350 Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII------ 433 R+ +F R GK D AD+ + D P E P E + ++I Sbjct: 351 KRVFALFQPHRYSRTASLTDEFGKAFAD-ADVLRIMDVYPAGEAPIEGVSGKLIADAVEA 409 Query: 434 HGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 G P + ++ EA +E L D+L G G T Sbjct: 410 FGAPTDVAYLPDKDEAAARVLEELQPGDILFTMGAGDVT 448 >gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium tetani E88] Length = 459 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/290 (20%), Positives = 133/290 (45%), Gaps = 28/290 (9%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 +S+D+R I+ IF+A+ G + +G+ + A +GA +V + ++ I+ T + Sbjct: 29 ISTDTRKIEEKAIFIALKGERFNGNEYTASASQKGAFICIVDEVHFKKE---EIKDYTTV 85 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 + V +T + L A K ++A+TG++GK+S + + +++ T Sbjct: 86 IKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTKDLTASVLG----AKYKVFKTE- 140 Query: 153 ISSFAQDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 +F +N + P I+ L K + G+++ H + + L I +I T Sbjct: 141 -GNF--NNEIGLPLMIFKLDKTYDIAVLEMGMSNF---GEIHKMAKTALPDIAII----T 190 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N+G HI+ +++ AK+ + + +++ I+ +D +++ +++ Sbjct: 191 NIGISHIENLKSRDNILKAKLEII-DFFGEDNILIVNGED----DLLGNLKEEKYKLIKT 245 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVA 318 G GK ++ N++ V+ + +G + P+PG+ V N+L+A Sbjct: 246 GL-GKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLA 294 >gi|298293097|ref|YP_003695036.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506] gi|296929608|gb|ADH90417.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506] Length = 469 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/400 (22%), Positives = 148/400 (37%), Gaps = 65/400 (16%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124 GA +VVSSA IR + P LV ++ + + + + ++ +A+ GT Sbjct: 66 GAAVLVVSSA---------IRRDNPELVAARAKRLPVVRRAEMLAELMRLKSCVAIAGTH 116 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ S V + G I I+++ + RL G Sbjct: 117 GKTTTTSLVATLLDAGGFDPTVIN-GGIINAYGTNARL----------------GDGEWM 159 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V S G + + TN+ +H+D+ +T A A R F + LP A Sbjct: 160 VVEADESDGT----FLKLPVEVAIVTNIDPEHLDHFKTFDA-VQAAFRSFIDNLPFYGFA 214 Query: 245 IIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 ++ D ++++ R + A R++ + +G + N Sbjct: 215 VMCTDHPVVQDLVGRVEDRRVITYGENPQADVRLVDLDLRGGVCRFNVLFRGRNGD---- 270 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 V + D + P+PG NA A + +G + L V RF G Sbjct: 271 -VRHELRDLVLPMPGRHNALNATAAIAVAHELGASDEQIRSALAGFGGVKRRFTRTG-EV 328 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411 G I+ DY H + +L+ R T G++I V R + + + A + AD Sbjct: 329 NGVTIFDDYGHHPVEIAAVLRAARASTEGQVIAV--VQPHRYTRLQSLFDQFATCFNDAD 386 Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451 IV D P E P IPG I++ + +EA+R Sbjct: 387 HVIVADVYPAGEAP----------IPG-IDRDHLVEALRA 415 >gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 455 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 31/258 (12%) Query: 190 SSHGLDQHRLDGIKLIA------GSF----------TNLGRDHIDYHQTQQAYFNAKMRL 233 +++G + DG LIA GSF TN+ DH+D++ +QQA +A + Sbjct: 144 NAYGANARLGDGAYLIAEADESDGSFLCLFPIVTVVTNVDMDHMDHYPSQQAIDDAFVD- 202 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292 F +P ++ DD + ++ R V++ G+ +G I +V A + Sbjct: 203 FMNKVPFYGMNVVCGDDPGVRRLLPRVKRP---VVTYGFGEGNAIR-AEVLACADSSLFN 258 Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 + V G D PG + NAL A G+ + I ++ L K V RFE G Sbjct: 259 VIVNGDDIGQVRLAQPGRHNILNALAAIGVALECDIAPEKIVAGLAKFGGVGRRFERKG- 317 Query: 352 NSRGGRIYV-DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA--L 407 R G + V DY H + L R R++VVF R + + G+ Sbjct: 318 -ERDGVLVVDDYGHHPAEIAATLATARQCFPHRRLVVVFQP--HRFSRTQALFGEFCKVF 374 Query: 408 DLADIAIVTDDNPRSEDP 425 D D ++T+ P SE P Sbjct: 375 DGVDKLLLTEIYPASEKP 392 >gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Length = 440 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 79/356 (22%), Positives = 151/356 (42%), Gaps = 62/356 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V ++ + +G+ + G FA + L + +Y+ + S+ Sbjct: 110 VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S +KL A +F NL DH+D +Q Y AK+R+FE Sbjct: 166 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEH 207 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295 I+ DD + +++ + S G+ QG + ++K I + T+ + Sbjct: 208 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKD-GIEYLAKNTVPL 256 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+ + N+LVA L A GI+ L+ L + + R + V N+ Sbjct: 257 LAANE---LGLVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNN-- 311 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415 G +V+ + +N + G++ ++ G GK +++ L D+ ++ Sbjct: 312 GIRWVNDSKATNVASTLAALSGLQLEGKLHLLVG-----GVGKGADFSELSPALHDLNLM 366 Query: 416 T------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 D S DP + E ++ EAI T LNK D+++++ Sbjct: 367 MYCFGEDGDQFVSLDPRSLLCETMN------------EAIATLYPTLNKGDMVMLS 410 >gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211] gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211] Length = 919 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/396 (20%), Positives = 153/396 (38%), Gaps = 52/396 (13%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TGT+GKS+ + V I + +G +G T++ + + A Sbjct: 514 VIAITGTNGKSTTSRMVAHILKHAGKV---VGLTTSNGIYVDGELIMGGDTTGPKSAKVI 570 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFE 235 LS V +E + G+ + L + G+ N+ DH+ + A ++ L Sbjct: 571 LSDPNVEVAVLETARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKSLVV 630 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQV-- 291 E++ +++ ADD + + ++A G F ++ C+ H ++ + Sbjct: 631 EVVTDTGTSVLNADDPLTVNMQRKA----------GGSITFFSMQDSNACSEHLQRHIDE 680 Query: 292 -------TISVEGKDFDFL-----FP------LPGEFQVY------NALVAAGLCIAIGI 327 ++ G + +P +P Y NAL A G+ + G+ Sbjct: 681 GGTAVVREATLLGDELVLYRAGHRYPVIRAREIPATLGGYARVNIANALAAIGVAVGAGV 740 Query: 328 DSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381 + ++ L PGR R+ +DYAH + L + + + + Sbjct: 741 ELPVIRAALGSFSTSFEQSPGRLNLY--EGHPFRVLLDYAHNPDGLRPLAELVPFLRPAK 798 Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441 GR+I VFG GDR MG I + D+ I+ +D R AE+ G + Sbjct: 799 GRVIGVFGVAGDRRDVDIREMGAILAGMFDLLILREDTDRRGRAPGEGAELTR--EGALA 856 Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 G E I+ + + D + AG+ + V I+ N Sbjct: 857 AGMNPEQIQVILHEPDAIDAALRAGQAGDLVVILPN 892 >gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp. TM1035] gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp. TM1035] Length = 469 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 62/290 (21%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++AVTG++GKS+ ++ + + +G ++ G L P Sbjct: 122 VIAVTGSNGKSTTSALIHHVLTEAGRAAQLAGNIGR-------GVLDIDPP--------- 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 GV V +E SS+ D R + FTNL DH+D H YF AK RLF E Sbjct: 166 -EDSGV--VVLELSSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAE 220 Query: 237 LLPKESPAIIYADDAYSK------------------EVMKRAHNAGCRVLS-VGYQGKFI 277 P A+I D+A + V ++ G V + G+ ++ Sbjct: 221 GGPDR--AVIGVDEAEGRYLAGQMAEGPNDDRVIRISVDRKLSGFGWSVFARKGFLSEYR 278 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337 H ++V +I ++ V+G LPG NA A C +G+ ++ Sbjct: 279 HGRQVGSIDLRE-----VKG--------LPGSHNHQNACAAYAACRTLGLAPRVIEAGFH 325 Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSN---SLEMIL--KNIRTITSG 382 +P R + V + G I+V+ + +N +L+ +L NIR I G Sbjct: 326 SYAGLPHRSQRVA--EKDGVIFVNDSKATNVDSALKALLAFDNIRWICGG 373 >gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia mollaretii ATCC 43969] gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia mollaretii ATCC 43969] Length = 438 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 52/248 (20%) Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-----SSFAQDNRLTTPS 166 ++P I+A+TG++GKS+V + V ++ + +G +Q+G I + Q+N+L Sbjct: 102 ENPAPIVAITGSNGKSTVTTLVGEMAKAAG---WQVGVGGNIGVPALTLLKQENQLVV-- 156 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQA 225 L S Q T S+ AS A + N+ DH D Y Q Sbjct: 157 -------LELSSFQLETTTSLRAS---------------AATILNVTEDHTDRYPFGLQQ 194 Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285 Y AK+R++E ++ ADDA + V A R +S G HL Sbjct: 195 YRAAKLRVYE----NAKVCVVNADDALTMPV----RGADSRCISFGVDVGDYHL------ 240 Query: 286 HNKQQ--VTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 NKQQ + + V+G+ L G NAL A L A+GI + L+ L Sbjct: 241 -NKQQGEIWLRVQGEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTG 299 Query: 342 VPGRFEFV 349 +P RF+ V Sbjct: 300 LPHRFQLV 307 >gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase [Clostridium cf. saccharolyticum K10] Length = 476 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 35/247 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91 +S DSR +FV ++G K+DGH FI A+ QGA A+ S + P Sbjct: 29 ISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEEVKAAAKRWPG 88 Query: 92 --ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF---- 145 + VD+TR+ L + + + ++ +TG+ GK++ V +G F Sbjct: 89 AAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALS-AGFHVFKTPA 147 Query: 146 ----QIGPTSTISSFAQDNR-------LTTPSPIYL-----AKALSYLSSQGVTHVSVEA 189 Q+G T+S + + ++ P + + A ++ +++ GVTH+ Sbjct: 148 NHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIAQIAAVDMAVITNVGVTHIENLG 207 Query: 190 SSHGLDQHRL---DGIKLIAGSFTNLGRDHIDYHQTQQA----YF----NAKMRLFEELL 238 + + + +L DG++ F N D + + ++ YF NA R + L Sbjct: 208 TRENILREKLKIQDGMRADGPVFLNGDNDLLGISRAREGHKTVYFGTGENADYRAVDIRL 267 Query: 239 PKESPAI 245 + P+ Sbjct: 268 ERGCPSF 274 >gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. SPB78] gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. SPB78] Length = 474 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 114/276 (41%), Gaps = 43/276 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +G + +G Sbjct: 103 LAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 149 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L+ + ++VE SS+ L H ++ + + NL DH+D+H + Sbjct: 150 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 202 Query: 225 AYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAH-NAGCRVLS----------VGY 272 AY K R++E A +Y + D ++E+++ A GCR + +G Sbjct: 203 AYAADKGRVYE----GNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGV 258 Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332 ++ + + QQ E D D P + NAL AA L A G+ + V Sbjct: 259 VEGYL-VDRAFVPDRAQQAQELAEVADVD----PPAPHNIANALAAAALARAFGVPATAV 313 Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 E L P R E V T G YVD + +N+ Sbjct: 314 REGLRAFRPDPHRIEHVATID--GVAYVDDSKATNT 347 >gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7] gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7] Length = 468 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 120/319 (37%), Gaps = 58/319 (18%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA AIV S+A S + I VV L RL + +AV GT G Sbjct: 63 RGAGAIVTSTAVSADNPEVLAARAARIPVVPRALMLAELM--RL-----KRGIAVAGTHG 115 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S V + L +F IG ++S + RL QG Sbjct: 116 KTTTTSLVASVLAAGDLDPTFVIG--GRLNSAGANARL----------------GQG-EF 156 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + VEA L + I TN+ DH+D + A + F + LP A Sbjct: 157 IVVEADESDASFLNLLPVMCI---ITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTA 213 Query: 245 IIYADDAYSKEVMKRAH----------NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVT 292 ++ +DD +E++ A R L+V G + +++ A +T Sbjct: 214 VLCSDDPNVREIIPFVSRPVTTYGIESEAQVRALNVRADGTLMRFDVQRQGATGALPPMT 273 Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350 +S+ LPG V NAL A + +G+ A ++E L + V RF VG Sbjct: 274 VSLN---------LPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQVGDF 324 Query: 351 --TNSRGGRIYV---DYAH 364 +GG Y DY H Sbjct: 325 PVAAQQGGGTYTVIDDYGH 343 >gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/ D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922] Length = 444 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 80/362 (22%), Positives = 143/362 (39%), Gaps = 41/362 (11%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V++D+R I IF A+ G K +G+LF +A+ +GA +VV +LQD I Sbjct: 31 VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQD--------DRI 82 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 ++V N + L A ++ +TG++GK++ + + Q FQ+ T Sbjct: 83 ILVKNGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQE----KFQVHYTQG 138 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIA----G 207 +N + P L+ LS ++V E ++ L + L + IA G Sbjct: 139 ----NLNNHIGVP--------LTLLSIPENAQIAVIEMGANHLKEIEL--LSSIAQPDLG 184 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 TN G H++ + K L+ L +I ADD + K + Sbjct: 185 YVTNFGHAHLEGFGGFEGVVKGKSELYNFLHEHHKTVLINADDPLQLQQAKAVESQISFS 244 Query: 268 LSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + Q + I LK+ ++NK QV + +D L G + N A G Sbjct: 245 KNESTQATYCIELKE--NVNNKIQVVV----EDVVIRSNLTGNYNWSNVAAAISFGKHFG 298 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385 + + +E + R + + + + +D Y +S+E L N T + + Sbjct: 299 LSPKEIKNGIENYYPANHRSQLIQKDKY--TLLMDAYNANPSSMEASLNNFSTFDGSKTV 356 Query: 386 VV 387 ++ Sbjct: 357 IL 358 >gi|188590785|ref|YP_001919870.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43] gi|188501066|gb|ACD54202.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43] Length = 872 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/334 (21%), Positives = 141/334 (42%), Gaps = 30/334 (8%) Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 +YG++P+NI ++VTGT+GK++ + + + G + +G TST + + + Sbjct: 470 MYGENPKNIPIVSVTGTNGKTTTTRLINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGD 526 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH----QT 222 A + L ++ V +E + GL + L TN+ DH+ Sbjct: 527 DSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADISVITNITNDHLGLDGINSME 586 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSV 270 Q ++ A L E + + ++ ADD +SK ++ R + +S Sbjct: 587 QLSFVKA---LVGEAVKENGFTVLNADDKWSKTIINRIKANKIFFSKYENNELIEKNISD 643 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G FI + ++N ++ +I D + ++ + N + A G + + ID Sbjct: 644 GGIAVFIENDYIVVVNNHKKYSIC-SINDVPLSYNGLLKYNLENIMAACGALVGMNIDYC 702 Query: 331 LVLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVV 387 ++ + + ++ GRF + R +I +DY H + +L ++ I + +I V Sbjct: 703 MISKGIMDFNLDNNNGRFNIYEVDGR--KIILDYGHNIEGYKAVLSSLNKIKKDKDLIGV 760 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 G GDR +GKI ++ D I+ +D R Sbjct: 761 IGIPGDRCDDIAIEIGKICSEMLDKIIIKEDKDR 794 >gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus DSM 2032] gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus DSM 2032] Length = 461 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 99/461 (21%), Positives = 176/461 (38%), Gaps = 94/461 (20%) Query: 63 AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122 A GA+ +V S+A + + + VV L + YG +AV G Sbjct: 60 AWVAGADVVVTSTAIAADNPEVVAAKEAHVPVVQRAEMLAELMRLKKYG------IAVAG 113 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 + GK+S S V I +GL PT Sbjct: 114 SHGKTSTTSMVAAILAEAGLD-----PT-------------------------------- 136 Query: 183 THVSVEASSHGLDQH-RL-DGIKLIA------GSF----------TNLGRDHIDYHQTQQ 224 V V HGL + RL +G L+A GSF TN+ +H+DY++ Sbjct: 137 --VVVGGKVHGLGSNARLGEGEFLVAEADESDGSFLKLSPVIEVVTNIDLEHLDYYRDID 194 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVC 283 + F LP A++ D+ + +++ R R+ + G + + K+ Sbjct: 195 -HIKDMFLEFINRLPFYGVAVVCIDNDHIAQLLPRIQK---RIATYGLTEQADLQAVKII 250 Query: 284 AIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342 + + Q T+ ++ + PG+ +YN+L A + + + ID +++ LE V Sbjct: 251 SGNGTSQYTVRSRKEELGVIRLNRPGKHLIYNSLAAVSVGLELEIDFSVIARALENFQGV 310 Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401 R + G + G + DY H + L +R R++V F R + + Sbjct: 311 QRRLQIKG-EAAGVLVVDDYGHHPTEIRATLDAVREGWPDRRVVVAFQP--HRYSRTKGL 367 Query: 402 MGKI--ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNR--------IEAIR 450 + A AD+ ++TD E P E + +E + ++G R +E + Sbjct: 368 FAEFTTAFRRADVLVLTDIYAAGESPIEGVTSERLQ--EAIKQRGQRQAHFIPQLVEQPQ 425 Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491 + +L D+L+ G G +IV GE+ + D+++E Sbjct: 426 VLMPLLQPGDLLLTLGAG----NIVRAGEQVL----DLLKE 458 >gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b] Length = 441 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 29/305 (9%) Query: 85 TIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I + Sbjct: 58 AIKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQ 115 Query: 140 SGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G++ F IG +SS + ++ +A Y S+ H Sbjct: 116 AGMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHY 164 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I ++ NL DH D + A + +PK AI DD EV+ Sbjct: 165 RPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLS 219 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 R + R+ ++ G+ + ++ Q + G + +PL G+F V N L A Sbjct: 220 RGQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAA 277 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 G++ + + LE+ V R E V +N G +Y D+AH ++ + ++ Sbjct: 278 IAATWNAGVNPMVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK- 335 Query: 379 ITSGR 383 SGR Sbjct: 336 -RSGR 339 >gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus flagellatus KT] gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus flagellatus KT] Length = 453 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 34/143 (23%) Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLA 171 ++A+TG +GKS+V + V +IC+ +G + G P + + A D +Y+ Sbjct: 111 KVIAITGANGKSTVTTLVGEICKAAGFKTVVAGNIGLPVLDVINDAVD--------VYV- 161 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L S Q T S+ A A + N+ DH+D + QAY NAK Sbjct: 162 --LELSSFQLETTYSLAAD---------------AATVLNISADHMDRYADMQAYANAKA 204 Query: 232 RLFEELLPKESPAIIYADDAYSK 254 R+F + ++ ADDA+S+ Sbjct: 205 RIFT----RAGLQVLNADDAWSR 223 >gi|323137892|ref|ZP_08072967.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242] gi|322396895|gb|EFX99421.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242] Length = 469 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 50/343 (14%) Query: 66 QGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118 +GA + A +L D S I+ + P L ++ + + + + + + Sbjct: 51 KGASVFIGHDAKNLGDAAVVVVSTAIKRDNPELAAAREKRLPVVRRAEMLAELMRLKQCV 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 A+ GT GK++ S V + GL I I+++ + RL Sbjct: 111 AIAGTHGKTTTTSLVATLLDAGGLDPTVIN-GGIINAYGTNARLGAGE------------ 157 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + VEA D+ +KL A TN+ +H+D+ T A A R F E Sbjct: 158 -----WMVVEA-----DESDGTFLKLPADVAIVTNIDPEHLDHFHTFDAIKEA-FRNFIE 206 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHN-----------AGCRVLSVGYQGKFIHLKKVCAI 285 LP A++ D +E++ R + A R+L V +G + Sbjct: 207 NLPFYGFAVMCLDHPTVQELVGRIEDRRVITYGENPQADVRLLDVNLEGGVSRFNVLLRD 266 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 Q T +E + + P+PG NA A + +G+ + + L V R Sbjct: 267 RKTAQATY-LE----NLVLPMPGHHNALNATAAITVAYQLGLSPDQIRKALAGFGGVKRR 321 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 F G + G +++ DY H + +L+ R T G+++ V Sbjct: 322 FTRTG-DWNGVQVFDDYGHHPVEIAAVLRAARASTKGKVVAVM 363 >gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus RS-1] gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus RS-1] Length = 457 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264 IA TN+ DH+D++ +A +A + + P ++ DD ++ R + Sbjct: 174 IASVVTNVDADHLDHYDGIEAIDDAFVDFLNNI-PFYGVNVVCLDDPGVARILPRVNRP- 231 Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323 +L+ G+ K ++ +S++GK + PG V NAL A G+ + Sbjct: 232 --ILTYGFSDKARLRGRIIDSGAMSCFEVSLDGKRLGEMRLNHPGRHNVLNALGAIGVSL 289 Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383 +GI + E L K V RFE G G + DY H ++ L R + R Sbjct: 290 EVGIPLGTIAEALAKFAGVGRRFERKGEKD-GVVVVDDYGHHPAEIKATLATARAVYPER 348 Query: 384 IIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP 425 +VV R + + G + AD ++T+ P SE P Sbjct: 349 RLVV-AFQPHRFSRTKALFGDFCTCFEAADELLLTEIYPASEAP 391 >gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9301] Length = 457 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/333 (23%), Positives = 135/333 (40%), Gaps = 53/333 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR +F+AI G DGH F+P + +G +++V+ + + N P VV Sbjct: 34 DSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGVKSVVIK-----EGMQKLLPDNFPCWVV 88 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG---LS----SFQIG 148 +T K ++A+TG+ GK++ V ++ + G LS + +IG Sbjct: 89 SDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTKEMVGEVLNKLGKIKLSHANFNNEIG 148 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208 TI + +++++ + +G+ + L ++ I +I Sbjct: 149 VGLTILATDKEDKVLVLE----------MGMRGLGQI------ENLSKYSKPDIAVI--- 189 Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGC 265 TN+G HI +++ AK + + L PK II A+D +E ++ + Sbjct: 190 -TNIGTAHIGLLGSKKNITYAKCEISKFLNPK-GVVIIPANDLLLEETLREYWKGRVTKV 247 Query: 266 RVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324 +L++ Q F + +N TI +E F+ F G N L+A + Sbjct: 248 ELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEISF--EGFHNASNFLLAYAVAKE 305 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 +GID E K F+FV S GGR Sbjct: 306 LGID----FESFNK-------FDFV---SLGGR 324 >gi|108758952|ref|YP_630922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase [Myxococcus xanthus DK 1622] gi|108462832|gb|ABF88017.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase [Myxococcus xanthus DK 1622] Length = 410 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 6/90 (6%) Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPI 401 PGR E VG + +D AH +E++L +++ + GR + +VFG GD+D+G P+ Sbjct: 268 PGRLEEVGQQPI---LLLDGAHNPAGVEVLLASLKDLYPGRRLHLVFGVVGDKDRG--PM 322 Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAE 431 M + + A + + + PRS PE AE Sbjct: 323 MRALLPECASVQLTPLETPRSLAPEAYLAE 352 >gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia prowazekii str. Madrid E] gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia prowazekii] gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia prowazekii Rp22] Length = 445 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 45/243 (18%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I +GL G P AKA Sbjct: 107 IAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV--------------PALQAKA---- 148 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 S++G +E SS LD + +K+ N+ DH+D +Q Y AK ++F+ Sbjct: 149 SNEGYV---LELSSFQLDLVKSFTVKV--AVLLNITPDHLDRYQDMNDYIAAKAKIFDR- 202 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNK-QQVT 292 + K+S A+I D+ Y CR + V Q K I + N V Sbjct: 203 MDKDSYAVINIDNDY------------CRKIFVLLQKDQSIKLIPFSVTKILKNGISIVD 250 Query: 293 ISVEGKDFDFLFPLPGEFQ-VYNAL-VAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEF 348 + D + PL Q ++N +AA +A IG++S +LE + + R ++ Sbjct: 251 DKIHDNDLTYKLPLNKNLQGLHNCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQY 310 Query: 349 VGT 351 +G+ Sbjct: 311 IGS 313 >gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus cristatus ATCC 51100] Length = 457 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 141/357 (39%), Gaps = 51/357 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR I+AG +F+ + G + DGH FI A QGA A + S + P ++V Sbjct: 32 DSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGATATL----------SERPVAEGPYVLV 80 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------GLSSFQIG 148 D+ A K ++LAVTG++GK++ + Q+ S G + +IG Sbjct: 81 DDVLAAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIG 140 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207 T+ D + G H+ D H L I K G Sbjct: 141 LPYTVLHMPDDTE-------------KLVLEMGQDHLG--------DIHLLSEIAKPKTG 179 Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267 T +G H+++ ++ KM++ + + K+ ++ D + + +V Sbjct: 180 IVTLVGEAHLEFFGSRTEIAKGKMQIADGM--KKGGLLLVPADKIVNDFLPDQQ----KV 233 Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327 + G I L ++ K +T + P+ G++ NA++A+ + + G+ Sbjct: 234 VRFGPDAD-ICLTRLE--ERKDSLTFEANFLEQAIDLPVTGKYNATNAMIASYVALQEGV 290 Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383 + + + +L + R E+ + G I D Y ++ +IL+ I + + Sbjct: 291 SESAIRQAFAQLELTRNRTEWKKA-ANGADILSDVYNANPTAMRLILETFSAIPASQ 346 >gi|85703766|ref|ZP_01034870.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217] gi|85672694|gb|EAQ27551.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217] Length = 465 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/332 (23%), Positives = 135/332 (40%), Gaps = 50/332 (15%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124 GAE +V+SSA I+ P L R + + + + ++ +AV GT Sbjct: 70 GAEVVVISSA---------IKPGNPELDEARKRGLPVVRRAEMLAELMRLKSNIAVAGTH 120 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ + V ++ + G+ I I ++ + R+ QG Sbjct: 121 GKTTTTTLVAELLVKGGIDPTVIN-GGVIHAYGSNARM----------------GQGEWM 163 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI----DYHQTQQAYFNAKMRLFEELLPK 240 V VEA +RL I TN+ +H+ D+ + +Q +++ F +P Sbjct: 164 V-VEADESDGTFNRLPATIAI---VTNIDPEHMEHWGDFERLRQGFYD-----FVSNIPF 214 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVE 296 A+ D + ++ R + RVL+ G+ + ++ V + K V + E Sbjct: 215 YGLAVCCTDHPEVQALVGRITDR--RVLTYGFNAQ-ADVRAVNLTYEKGVAHFDVALQAE 271 Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ + P+PG+ V NAL A + +G+ + + L V RF VG G Sbjct: 272 GRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKADEIRAALASFGGVNRRFTRVG-EVDG 330 Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387 I DY H + +L+ R T+GR+I V Sbjct: 331 VTIIDDYGHHPVEIAAVLRAARQATTGRVIAV 362 >gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis SK678] Length = 456 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 87/388 (22%), Positives = 158/388 (40%), Gaps = 74/388 (19%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-----AEAIVVSSAYS 78 Q+ + DSR I++G +FV + G + DGH FI A AQG +E V AY Sbjct: 20 QFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGAAATLSERPVAEGAY- 77 Query: 79 LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137 ++VD+ A K ++LAVTG++GK++ + Q+ Sbjct: 78 --------------ILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDMLAQLLA 123 Query: 138 ------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191 + G + +IG T+ +D + G H+ Sbjct: 124 TTYKTYKTQGNYNNEIGLPYTVLHMPEDTE-------------KLVLEMGQDHLG----- 165 Query: 192 HGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 D H L + K G T +G H+++ ++ KM++ + L K+ I+ AD Sbjct: 166 ---DIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADGL-RKDGLLIVPAD- 220 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FP 305 +++ A C+++ G I L ++ +++ ++S E +FL P Sbjct: 221 ----KIVNEFLPADCKLVRFGPDAD-IFLTRL----EERKDSLSFE---CNFLEQRIDLP 268 Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364 + G++ NA++AA + G+ A + + +L + R E+ + G I D Y Sbjct: 269 VTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEWKKAGN-GADILSDVYNA 327 Query: 365 TSNSLEMILKNIRTITS---GRIIVVFG 389 ++ +IL+ TI + GR + V Sbjct: 328 NPTAMRLILETFSTIPANPGGRKLAVLA 355 >gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella copri DSM 18205] gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella copri DSM 18205] Length = 445 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 120/303 (39%), Gaps = 51/303 (16%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ S + I + +G + +G I TP Y+ Sbjct: 104 MICITGSNGKTTTTSLIYHIIKSAG---YDVGLAGNIGKSLALQVAETPHKYYV------ 154 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 +E SS LD + + N+ DH+D Y Q Y +AKMR+ + Sbjct: 155 ----------IELSSFQLDN--MYKFRANVAILLNITPDHLDRYEFKMQNYTDAKMRITQ 202 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++S D +KE+ K + HL + V Sbjct: 203 NQTEEDSFIFWNDDPIVTKELAKYNLKS--------------HLCPFSEFKEEGCVGFIE 248 Query: 296 EGK---DF--DFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 +GK +F DF P L G+ +YN+L A C +GID + + L V R Sbjct: 249 DGKYKLNFPSDFEMPQADMSLRGKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPGVEHR 308 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG--CGGDRDQGKRPIMG 403 E VG G YV+ + +N ++ + ++T+ I+++ G G D +Q K + Sbjct: 309 LEKVGKFQ--GVYYVNDSKATN-VDACWYALESMTTPTILIIGGKDKGNDYNQIKDLVKE 365 Query: 404 KIA 406 K A Sbjct: 366 KCA 368 >gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Saccharophagus degradans 2-40] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 20 IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79 ++P + + +++D+R I G +F+A+ G DGH ++ A +GA A +V + + Sbjct: 17 VYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVATRKGAAAAIVETPNTN 76 Query: 80 QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 D P V ++ K L K ++ VTG+ GK++V + IC Sbjct: 77 LDL--------PQWCVGDSYKALGELGLASREKFNGKVIGVTGSCGKTTVKGMLAAICSL 128 Query: 140 SG 141 +G Sbjct: 129 AG 130 >gi|294784927|ref|ZP_06750215.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27] gi|294486641|gb|EFG34003.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. 3_1_27] Length = 468 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 14/190 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268 TN+ DH+D H N K E + + AII D KE + R + Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + I K + K + + + +F +PGE + N+L L + G+ Sbjct: 238 SIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + E L K R++ + G ++ RI DYAH +++ LK I++ Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKVTLKAIKS 357 Query: 379 ITSGRIIVVF 388 I + R++ +F Sbjct: 358 IDTSRLVAIF 367 >gi|317050839|ref|YP_004111955.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5] gi|316945923|gb|ADU65399.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5] Length = 453 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/325 (20%), Positives = 131/325 (40%), Gaps = 39/325 (12%) Query: 68 AEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 A +V SSA S + + + R P++ + A + KH + + G G Sbjct: 65 AHVVVTSSAVSKENPEVAEARRKRIPVI------SRAEMLAELMRMKHG---VLIAGAHG 115 Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 K++ S V + +GL PT I + N++ + + + QG V Sbjct: 116 KTTTTSLVATVLTDAGLD-----PTVVIG--GRLNKIKSNAKL----------GQGDLIV 158 Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245 + S G H + + TN+ ++H+D++ + + N ++ + P + Sbjct: 159 AEADESDGSFMH----LPPVLSVVTNIDKEHMDHYGSMENLKNTFLKFINKT-PFFGVSF 213 Query: 246 IYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303 + DD + ++++ R + L+ H+++ Q+ ++ G++ +F Sbjct: 214 VCLDDEHIQDILPRIERSHVTYGLNTNADIFAHHIRRTNGC---QRFDVNYNGRELGEFR 270 Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363 LPG V N+L G+ + + + LE V RFE G + G + DY Sbjct: 271 LCLPGVHNVVNSLPVIGIALEFEVPVDTIRHSLEHFAGVHRRFEITG-HMNGFAVVDDYG 329 Query: 364 HTSNSLEMILKNIRTITSGRIIVVF 388 H + +LK R SG++I +F Sbjct: 330 HHPTEIMAVLKAAREWYSGKVIAIF 354 >gi|325479251|gb|EGC82347.1| bifunctional protein FolC [Anaerococcus prevotii ACS-065-V-Col13] Length = 422 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%) Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV---PGRFEFVGTNSRGGRIYVDY 362 L G Q+YNA A + L E + K + PGR + + TN R I VD Sbjct: 250 LIGNHQIYNAATALMVIDFFKDKFNLTDEDIYKGMLEAKNPGRLQLISTNPR---ILVDG 306 Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNP 420 +H +++ + +I+ ++IV F D+D ++ K+ +AD +VT+ +NP Sbjct: 307 SHNKEAIDALASSIKNYNYDKLIVGFSILEDKDY--TYVIDKLT-SIADEIVVTEITENP 363 Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466 R+ + +K+ + + +P I + IEA N+ D++V G Sbjct: 364 RAFELDKLYSLVKSKLPNTISIKDNIEAFEYTKNTANENDLVVWCG 409 >gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae NCCP11945] Length = 436 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 8/117 (6%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 M + ++ + +DSR I+ G +F A+ G + D H F+ ++ GA A+VVS +D Sbjct: 1 MPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSR----EDC 56 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 +A + L VD+T L A + +TG+ GK++V + + +R Sbjct: 57 AALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRR 109 >gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Western North America USA6153] gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Australia 94] gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Sterne] Length = 243 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K F E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ +A+ GA Sbjct: 4 KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + +Y + PI+ VD+T L A + ++ +TG++GK++ Sbjct: 62 IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 115 Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162 V V+ I + + G + QIG TI +D + Sbjct: 116 VKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 156 >gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlamydophila pneumoniae AR39] gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138] Length = 447 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 50/375 (13%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++KI + DS+ +Q G +F A+ GN DGH F+ A GA A VVS Y F Sbjct: 23 DKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHAATAGAVAAVVSHDYQGDSFGLE- 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 ++ VD+T+ L S ++ +TG+ GK++ F + I S + Sbjct: 82 -----LIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKTTTKEFSKTIL--SSIYKTH 134 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206 P S +++LT P + +A+ + V + + S G Q L ++ Sbjct: 135 ASPKSY------NSQLTVPLSLLMAEG-----DEDVMILEMGVSEPGNMQDLLRIVQPEI 183 Query: 207 GSFTNLGRDH-IDYHQTQQAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAH 261 T++ H + + Q Q K + + +LLPK+SP Y D R+ Sbjct: 184 AVITHINDQHAMHFPQGIQEILKEKSYILQKSKLQLLPKDSP--YYLD--------LRSC 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQ--VYNALV 317 + S + L C AI ++ ++ + ++ P+ ++ N L+ Sbjct: 234 SPTAEKFSFSFNDP---LADFCYKAISGD---SVVIQTPEENYCLPIAFSYKPAYTNLLI 287 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NI 376 A L + + V+ L +L + P RFE + R G ++ A+ + MI + Sbjct: 288 AVALSWILEVPEEGVIRSLPELKLPPMRFEH---SMRNGMQVINDAYNACPEAMIAALDA 344 Query: 377 RTITS--GRIIVVFG 389 + S G+II++ G Sbjct: 345 LPLPSDGGKIILILG 359 >gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli 8C-3] Length = 216 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 46 FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105 F AI G++ DGH + A+A GA +VVS A A R P++VVD+ L Sbjct: 3 FFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVDDVLAALGRL 58 Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + I+AVTG+ GK++ ++ + SG Sbjct: 59 GQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSG 94 >gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp. indica ATCC 9039] Length = 476 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 13/189 (6%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262 TN+ +H+D+ +T A A R F E +P A++ D +E++ + Sbjct: 181 TNIDPEHLDHFKTFDAIKQA-FRAFIENIPFYGFAVMCLDHPVVQELVGTIEDRRIITYG 239 Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A R++ V G V Q E + D L P+PG NA A Sbjct: 240 ENPQADMRLVDVNLDGGMSRFNVVVRDRKAGQGKRFEERRVEDLLMPMPGLHNALNATAA 299 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + + +G+ + L V RF G G +I+ DY H + +L+ R Sbjct: 300 LSVALQLGMSDDAIRSALRGFGGVKRRFTRTG-EWNGAQIFDDYGHHPVEIAAVLRAARA 358 Query: 379 ITSGRIIVV 387 T G++I V Sbjct: 359 STKGQVIAV 367 >gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelateligase [Vibrio splendidus LGP32] gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelateligase [Vibrio splendidus LGP32] Length = 452 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 53/344 (15%) Query: 59 FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFAS-RLYGKHPEN 116 F P + + +V+ +A S R N + V+DN ++ S + + H Sbjct: 53 FDPSQLEPRPDLVVIGNAMS--------RGNPCVEYVLDNNLRYTSGPQWLQEFLLHDRW 104 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175 +LAV+GT GK++ +S + I + G + F +G + +F RL S ++ +A Sbjct: 105 VLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVG--GVLGNFGISARLGE-SMFFVVEADE 161 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 Y S+ + S + H + NL DH D +A R F Sbjct: 162 YDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----KRQFH 205 Query: 236 ELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQ 290 L+ P +D ++V+ R GC S G QG + KK+ + + Q Sbjct: 206 HLVRTVPGNGRIFSPKEDTAIQDVLSR----GCWSETESSGEQGDW-DAKKL--VKDGSQ 258 Query: 291 VTISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + +G+ D+D L G+ V NAL+A +G+ L E L K R Sbjct: 259 FGVYFQGECVGTVDWD----LVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRR 314 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 EF G + G +Y D+AH ++E+ L +R + + +II V Sbjct: 315 LEFKGEVA-GVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVL 357 >gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon] gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12] gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon] gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12] Length = 477 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 48/334 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121 G + +VVSSA IR + P L+ +++ ++ A + +H +AV Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ S + + GL PT I + A A + L + Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + VEA RL+ + + TN+ DH++ + + F + LP Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299 A++ DD EV + A A V++ G + + V + T+ + EGK Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356 LPG V NAL A+ + +G+ ++ L+ + RF +G + G Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337 Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R+ DY H LE + R R++V F Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM 2243] Length = 494 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 151/380 (39%), Gaps = 71/380 (18%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS---- 88 ++ DSR + G ++VA+ G + DGH F+ A++ GA +V +Q +R Sbjct: 30 LTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALV-----MQPLDEAVRMLAAE 84 Query: 89 -NTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ V +T ++ A S L+G+ ++A+TG++GK++ + V+ + Sbjct: 85 LGASVIEVPDTAHAVADIAREWRSHLHGR----VIALTGSTGKTTTKNLVRDVL------ 134 Query: 144 SFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--H 197 ST+S+ A Q+N L P + A+ Q V VE G Q Sbjct: 135 ------ASTLSTVATAGNQNNELGVPKTLLAAE-------QDTQAVVVEMGMRGAGQLAD 181 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 D ++ G N+G HI+ +++ AK L L A + ADD Y+ V Sbjct: 182 LCDYVRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVR 241 Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---------KQQVTISVEGKDFDFL----- 303 + A RV +V + G ++ +QV + +G+ L Sbjct: 242 EHARLDARRVETVLFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGF 301 Query: 304 ------------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 L G V NA A + A GI A+ + L GR E + Sbjct: 302 ADAPEEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVL-- 359 Query: 352 NSRGGRIYVDYAHTSNSLEM 371 +RGG V+ A+ +N M Sbjct: 360 RARGGFTVVNDAYNANPDSM 379 >gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Synechococcus sp. CC9311] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 ++++ V +DSR + AG FV + G + DGH F+ A QG +A VV+ +D + Sbjct: 27 QQRLGPVCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVA-----RDSDIPV 81 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + +VD+T + A + ++A+TG++GK++ ++ G Sbjct: 82 PQSLLHWIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQAS 141 Query: 147 IG 148 IG Sbjct: 142 IG 143 >gi|251778502|ref|ZP_04821422.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082817|gb|EES48707.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 872 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/408 (21%), Positives = 173/408 (42%), Gaps = 42/408 (10%) Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166 +YG++P+NI ++VTGT+GK++ + + + G + +G TST + + + Sbjct: 470 MYGENPKNIPIVSVTGTNGKTTTTRLINHVLSKMG---YSVGMTSTEGIYVNNKCIHKGD 526 Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH----QT 222 A + L ++ V +E + GL + L TN+ DH+ Sbjct: 527 DSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADVSVITNITNDHLGLDGINSME 586 Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC------------RVLSV 270 Q ++ A L E + + ++ ADD +SK ++ R + +S Sbjct: 587 QLSFVKA---LVGEAVKENGFTVLNADDKWSKTIINRIKANKIFFSKYENNELIQKNISD 643 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330 G FI + ++N ++ +I D + ++ + N + A G + + ID Sbjct: 644 GGIAIFIENDYIVVVNNHKKYSIC-SINDVPLSYNGLLKYNLENIMAACGALVGMNIDYC 702 Query: 331 LVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVV 387 ++ + + + GRF + R +I +DY H + +L ++ I + +I V Sbjct: 703 MISKGIMDFNLNNNNGRFNIYEVDGR--KIILDYGHNIEGYKAVLSSLNKIKKDKDLIGV 760 Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGN-- 444 G GDR +GKI ++ D I+ +D + R + +I + + +G+ E N Sbjct: 761 IGIPGDRCDDIAIEIGKICSEMLDKIIIKEDRDRRGREQGEIASLLKNGV--LRENKNSK 818 Query: 445 ------RIEAIRTAIEMLNKQDVLVVAGKGHET-VHIVTNGEKKMSVD 485 I+A+ A+ + K D +VV + E+ V + N + S+D Sbjct: 819 IHVCLDEIKALEKALMISKKGDTIVVFFEDLESIVKYIKNKDSNNSLD 866 >gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis 5-1] Length = 536 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V SDSR I+ G +FVAIVG DGH ++ A GA +V +N Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107 Query: 91 PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +VV+N+ + L L A R P I+ +TG+ GK++ ++ + G + Sbjct: 108 NQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVA 167 Query: 146 QIG 148 +G Sbjct: 168 PVG 170 >gi|297623832|ref|YP_003705266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera radiovictrix DSM 17093] gi|297165012|gb|ADI14723.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera radiovictrix DSM 17093] Length = 450 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 43/240 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 IL +TGT+GK++V ++ +GL + P+ + AL+ Sbjct: 96 ILGITGTAGKTTVTRWLSHTLTLAGLDA--------------------PAGGNVDPALAA 135 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +++ G V+ E SS L+ R + NLGRDH+D H + AY AK RL Sbjct: 136 VAAPGRVLVT-ELSSFQLE--RCPSLHPRVAVVLNLGRDHLDRHGSLAAYHAAKKRLIAH 192 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKK-VCAIHNKQQ 290 L P+++ +Y D + + RA + G+ G HL + +H + Sbjct: 193 LTPEDT--FVYNHD----DPLVRAWAEASPARTWGFSAAPTPGSAAHLADGMLTLHGRPL 246 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V + L G+ NAL A A G+ + LE VPGR+ VG Sbjct: 247 VAVRA--------LQLTGQHHRLNALAVALAAAAWGLGDEAIRAGLESFSGVPGRYSVVG 298 >gi|291518352|emb|CBK73573.1| UDP-N-acetylmuramate--L-alanine ligase [Butyrivibrio fibrisolvens 16/4] Length = 414 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/329 (23%), Positives = 118/329 (35%), Gaps = 64/329 (19%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138 ++A I + P L+ L + L G+ EN + V GT GK++ S V QI Sbjct: 54 YTAAISDDNPELMAAKASGKPMLTRAELLGEIMENYANSITVAGTHGKTTTTSMVSQILL 113 Query: 139 RSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + PT T+ + N S I++A+A Y +S H Sbjct: 114 ETSKE-----PTITVGAILDAIHSNVHVGDSDIFVAEACEYTNS-----------FHSF- 156 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAY 252 +I N+ DH+D+ + A R F E + II + +Y Sbjct: 157 ---FPKYNII----LNVEADHLDFFKNLDN-VRASFRKFAENTSDDGALIINNEIDNVSY 208 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL------ 306 E +K C+V++ G + IS K F P+ Sbjct: 209 FTEGLK------CKVITYALHGD----------ADIVPTEISYNEKGFASFVPVYKGQAL 252 Query: 307 -------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 PG+ + NAL A LC+ +G+D + + L K RFE G +G + Sbjct: 253 ERITLNVPGDHNISNALSAIVLCLEMGVDYSCIKTGLSKFGGAHRRFELKGI-YKGATVI 311 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388 DYAH + L RIIV F Sbjct: 312 DDYAHHPTEIRASLAAAANYPHNRIIVCF 340 >gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243] gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA] gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243] gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA] Length = 475 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 99/439 (22%), Positives = 152/439 (34%), Gaps = 73/439 (16%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENIL 118 P I +G IVVS+A I N P L R +++ Y L Sbjct: 60 PANIPEGNPVIVVSTA---------ILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTL 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AV GT GK++ +S + + G PT I I A + S Sbjct: 111 AVAGTHGKTTTSSMLASVLDGMGED-----PTFLIGG------------IVRAYGTNAHS 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H VEA L ++ TN+ DH+D+++ + K F + Sbjct: 154 GTG-AHYVVEADESDKSFMHLSPRAVL---VTNIEADHLDHYRDLDEIYE-KFASFIGSV 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + ++ + + +++ A +G R+ + G+ C + V G Sbjct: 209 PDDGGVVVACGE--DEALVRVARASGKRLFTYGF-------SDACDVRIASYEPNGV-GS 258 Query: 299 DFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 DF P PG V NA GL A+G D A E L V RF+ Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFD 318 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405 VG + G + DYAH + ++ + + V+F + P+ ++ Sbjct: 319 LVG-EAGGVTVVDDYAHHPTEIAATIEAASHLGFAHVHVLFQP---HRYSRAPLFTEVLK 374 Query: 406 -----ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKG---NRIEAIRTA 452 A D AD D P E P K ++ G E RIE + Sbjct: 375 DDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYL 434 Query: 453 IEMLNKQDVLVVAGKGHET 471 L + D+L+ G G T Sbjct: 435 AGKLGEGDLLITMGAGDVT 453 >gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans lithotrophicus ES-1] Length = 480 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 159/384 (41%), Gaps = 27/384 (7%) Query: 23 MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82 M + + + VS+D+R IQ G +F+A+ G DG F+ QA GA A VV+ L+ Sbjct: 15 MDGADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAAMAGAVAAVVNRDAGLR-- 72 Query: 83 SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ---- 138 T S P+L V++TR L A+ + ++A+TG++GK++V + I + Sbjct: 73 --TQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVKEMLSAILRQKIK 130 Query: 139 -----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193 RS ++G F + + I + L L + V +H Sbjct: 131 DDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANHRYAVIEMGMNH- 189 Query: 194 LDQHRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249 + +D + IA N H+ T + AK +F L + A+I AD Sbjct: 190 --PNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAG-LKDDGTAVINAD 246 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 DA++ + R+ RVL + K ++ + + + +PGE Sbjct: 247 DAHA--ALWRSLAGKHRVLDFSLEHPANIQGKWVVQGYGGELLVRTPAGEMRIVLQVPGE 304 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN-- 367 NAL AA +A+ I SA ++ L+ V GR + ++ G +D + +N Sbjct: 305 HNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQR--KQAKNGATLIDDTYNANPA 362 Query: 368 SLEMILKNIRTITSGRIIVVFGCG 391 S+ L+ + RI V+ G Sbjct: 363 SMHAALEVLAQAKGKRIFVLGDMG 386 >gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1] gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1] Length = 880 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 76/322 (23%), Positives = 122/322 (37%), Gaps = 29/322 (9%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A +GT+GK++ + I + G +++G T++ + Q+ L T A A Sbjct: 487 IIATSGTNGKTTTTRLIAHIAKMKG---YRVGYTTSDGVYIQNRLLMTGDCTGPASAEFV 543 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH--QTQQAYFNAKMRLF 234 L V +E + GL + L K TN+ DH+ T + K + Sbjct: 544 LKDPTVNFAVLECARGGLLRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKVKAVVP 603 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNK 288 E +LP + AI+ ADD + M+R N C V +K + A++ Sbjct: 604 ETVLP-DGYAILNADDDLVYD-MRR--NVDCNVALFSMDENNPRVKALQRKGGITAVYEN 659 Query: 289 QQVTIS--------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLE-HL 336 VTI +E + + +F + N L A GI D LE + Sbjct: 660 GWVTICRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIEDMKAALETFI 719 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396 PGR N I +DYAH + + K + + + + GDR Sbjct: 720 PSASQTPGRLNLFEFNDFS--ILLDYAHNPAGMRALQKFTDELDATVKVGIIAGIGDRRV 777 Query: 397 GKRPIMGKIALDLADIAIVTDD 418 MG IA ++ D I+ D Sbjct: 778 EDNNEMGSIAAEMFDEIIIRQD 799 >gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Burkholderia gladioli BSR3] Length = 468 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 + VS+DSR + G +FVA+ G + D H F+ A+GA A +VS + ++ Sbjct: 27 SRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAALVSREGA--------PASL 78 Query: 91 PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 P L V +TR L A + ++AVTG++GK++V + I Sbjct: 79 PQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIASI 124 >gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus prevotii DSM 20548] gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus prevotii DSM 20548] Length = 439 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 120/307 (39%), Gaps = 65/307 (21%) Query: 114 PE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 PE I+A TGT+GK+S S + I SG + +G I PS I+ Sbjct: 95 PEAKIIATTGTNGKTSTTSMISHILNESGRKAISVG---NIGEGILWQMYENPSAIF--- 148 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 S E SS L H + K TN+ DHID+H + Y N+K+ Sbjct: 149 -------------SCELSSFQL--HDVSTYKPHIACITNITEDHIDWHGSFDDYINSKLN 193 Query: 233 LFEE-------LLPKESPAII--YAD------DAYSKEVMKRAHNAGCRVLSVGYQGKFI 277 + + ++ E P ++ AD + SKE + R + QGK I Sbjct: 194 ICRKQDSGDFLVINHEDPILVDHKADFRAKVYEFSSKEEVDRGAYLKGSSIFFKDQGKNI 253 Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHL 336 L V +S+ G+ Y L+AA L C G+ ++ Sbjct: 254 KLMDVD--------DLSIIGR------------HNYENLMAAILACFIYGVSIEDIIRGS 293 Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRD 395 + + R EFV T+ RG R+Y D T+ + +++ I S + IV+ G D++ Sbjct: 294 KSFKSIEHRLEFV-TDIRGIRVYNDSKGTN-----VDSSVKAIQSFDKPIVIIAGGYDKN 347 Query: 396 QGKRPIM 402 P + Sbjct: 348 IDYSPYI 354 >gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893] gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893] Length = 481 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 35/280 (12%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S + + +GL PT I L A + Sbjct: 122 IAVAGTHGKTTTTSLIASVLGEAGLD-----PTFVIGG-------------KLNSAGTNA 163 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 G ++ EA D L +I+ TN+ DH+D + F Sbjct: 164 QLGGSRYLVAEADES--DASFLHLTPVIS-VVTNIEADHMDTYGGDIERLKQTFVDFLHN 220 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 LP A++ DD + +E++ R A G Y+ + I + + + + Sbjct: 221 LPFYGVAVMCVDDGFVQEIIPRISRAIITYGIDNPDADYRAENIESDGL-----RTRFVV 275 Query: 294 SVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 G D D +PG V NAL A + G+D A + L V RF+ G Sbjct: 276 RRPGGRSDLDVELKMPGRHNVQNALAAIAVATDEGVDDAAICRGLAGFAGVGRRFQVYGD 335 Query: 352 -NSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVF 388 ++R G + + DY H +E +++ R R +V+ Sbjct: 336 YSTRKGTVTLIDDYGHHPTEVEAVIRAARDAWPDRRLVML 375 >gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A str. Hall] gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A str. ATCC 3502] gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str. ATCC 19397] gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str. Hall] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/322 (20%), Positives = 121/322 (37%), Gaps = 51/322 (15%) Query: 82 FSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137 ++A I S+ P + + + F L + NI A++GT GK++ S + + Sbjct: 75 YTAAIASDNPEITKAKEKNIKLMDRADFLGNLMKGYKYNI-AISGTHGKTTTTSMLSHVA 133 Query: 138 QRSGLSSFQIGPTSTIS---SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194 ++ + PT + N S ++ +A Y SS Sbjct: 134 LKA-----NVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSF-------------- 174 Query: 195 DQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +K G N+ DH+DY++ NA + F +L+PK+ + Y +D Sbjct: 175 -------LKFFPYIGVILNIDADHLDYYKDLDDIKNAFSK-FIKLIPKDGYLVAYGEDKN 226 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPL 306 + ++K A C V++ G I +K C + + K F + Sbjct: 227 IQSIIKEA---SCNVITYGINSGDIQAHNIEYDEKACGNFD----VVKDNQKLFSVKLNV 279 Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366 PG+ + N+L + + +A + ++E +E RFE G + I DYAH Sbjct: 280 PGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKNNITVI-DDYAHHP 338 Query: 367 NSLEMILKNIRTITSGRIIVVF 388 + L + ++ VF Sbjct: 339 TEISATLDAAKKYPHNKLFCVF 360 >gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gardnerella vaginalis 409-05] Length = 536 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V SDSR I+ G +FVAIVG DGH ++ A GA +V +N Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107 Query: 91 PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145 +VV+N+ + L L A R P I+ +TG+ GK++ ++ + G + Sbjct: 108 NQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKALLSTLGETVA 167 Query: 146 QIG 148 +G Sbjct: 168 PVG 170 >gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium etli GR56] Length = 247 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 43 GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102 G F AI G++ DGH + A+A GA +VVS A A R P++VV++ L Sbjct: 39 GEAFFAIKGDRVDGHDYASMAMANGASLLVVSEAR----LPAMGRLTVPMIVVEDVLAAL 94 Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 + I+AVTG+ GK++ ++Q+ SG Sbjct: 95 GKLGLASRERSKARIIAVTGSVGKTTTKEMLRQVLSPSG 133 >gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Faecalibacterium prausnitzii L2-6] Length = 457 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 27/237 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 + I V++DSR + G IFVA G + DGH F +A+ +GA +V++ + Sbjct: 22 QPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPVE------GVP 75 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 + ++ D+ + + A+ HP+ ++ VTG+ GK++ + ++ F Sbjct: 76 AERAVISPDSYHAMMVMGANYRGQFHPK-VVGVTGSVGKTTTKQMTY-----AAIAGF-- 127 Query: 148 GPTSTISSFA-QDNRLTTPSPIY-LAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKL 204 +TI + Q+N L P ++ + + Y + G++H G + + Sbjct: 128 --GNTIKTEGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHA-------GEIERLAKCARP 178 Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G T +G HI +Q+ AK+ + L + SP ++ DD + ++ H Sbjct: 179 DVGIITCIGVSHIGNLGSQENICKAKLEICAGLA-EGSPLVLNGDDPFLRKAALPTH 234 >gi|170781766|ref|YP_001710098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter michiganensis subsp. sepedonicus] gi|169156334|emb|CAQ01482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clavibacter michiganensis subsp. sepedonicus] Length = 514 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 20/192 (10%) Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246 VE SSH L H + ++ + +F NL DH+++H ++QAY AK R++ + A + Sbjct: 191 VELSSHQL--HYMREVRPYSSAFLNLADDHLEWHGSRQAYAAAKGRVYAD----TRVACV 244 Query: 247 Y--ADDAYSKEVMKRAH-NAGCRVLSVGYQGK-----FIHLKKVC-AIHNKQQVTISVEG 297 Y AD A +++ ++ A+ G R + G I +C +++ T ++E Sbjct: 245 YNRADRA-TEDALRHANVQDGARAIGFGLDAPGPSDLGIVDDILCDRAFLEERFTSALEL 303 Query: 298 KDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 D L L V N L AA L + G+ A+V + L++ + R E +G R Sbjct: 304 TTLDELRAVGLAAPHIVQNVLAAAALARSYGVSPAVVRQALQRFELDSHRIERIG--ERD 361 Query: 356 GRIYVDYAHTSN 367 G +VD + +N Sbjct: 362 GVAFVDDSKATN 373 >gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Jannaschia sp. CCS1] Length = 473 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R I+ G +FVA+ + DGH F+ QA +GA A +V+ D + Sbjct: 26 VSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQKGASAALVNHVPDGMDAA-------KC 77 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 LVVD+ L + + ++A+TG+ GK++V ++Q G Sbjct: 78 LVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVKDMLKQALSGQG 126 >gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia denticolens F0305] gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia denticolens DSM 10105] gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia denticolens F0305] gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia denticolens DSM 10105] Length = 510 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 29/157 (18%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171 P + +TGT+GK+S +I Q +G + +G +S AQD PS YL Sbjct: 110 QPAVWVGITGTNGKTSTTEMTSEILQAAGYQAPAVGNIGVPVSQAAQD-----PSNRYLV 164 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 VE SS L H D + L + TNL DH+D+H + Y K Sbjct: 165 ---------------VELSSFQL--HYTDDLALAGAAITNLADDHLDWHGGFENYAADKA 207 Query: 232 RLFEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCR 266 +++ + S ++Y ADD + A A GCR Sbjct: 208 KVYSGV----SQVLVYNADDPRVSAKAREARPAPGCR 240 >gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 491 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 21/157 (13%) Query: 35 SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94 +DSR I G +FVAI G + DGH ++ + AQGA A +V + P +V Sbjct: 34 TDSRQIVEGSVFVAIAGERVDGHDYVSKVGAQGAVAAIVDHEID--------GAGVPQIV 85 Query: 95 VDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 V++T L A R + P ++ +TG+ GK++ ++ + IGP Sbjct: 86 VEDTVLALGALAKHNIERRRALETPFTVIGITGSVGKTTTKDLMKALLA-------HIGP 138 Query: 150 T-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185 T + + SF + L S A+ ++ G HV Sbjct: 139 TIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175 >gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 451 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 ++ + I VS DSR I +F+ G DGH ++ QA+ GA A L + Sbjct: 20 EFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQALKDGAGAAFYQKGEPLDE-- 77 Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138 + PI+ VD+T + L A ++AVTG++GK++ ++ + + Sbjct: 78 ---NIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKTTTKDMIESVLK 129 >gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 37/231 (16%) Query: 186 SVEASSHG------LDQHRLDGIKLI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 ++E SS + +L+ IK G N+ DH++ H T + Y AKMR+FE Sbjct: 152 TIETSSENTIFVLEISSFQLETIKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFEN 211 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQV 291 + D V+ +N ++ + + K C N K + Sbjct: 212 I------------DEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKCQFKNMVFVEKDTI 259 Query: 292 TISVEGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 + EGK + + +PGE + NAL A + GI+ + + L+ V R E Sbjct: 260 YFTFEGKTQEIMKKDEIFIPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIE 319 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398 FV G + Y D T+ + K +R S I++ G D+G+ Sbjct: 320 FVA-EINGIKFYNDSKGTNT--DAAEKALRAFESPIILI----AGGYDKGE 363 >gi|207109934|ref|ZP_03244096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Helicobacter pylori HPKX_438_CA4C1] Length = 143 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221 LTTP+ + L L G + +E SSH + Q R+ G+ TN+ DH+D+H+ Sbjct: 10 LTTPTLLELYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHK 69 Query: 222 TQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAH 261 + + Y +AK F++ + E+ A+ +A++ + K+AH Sbjct: 70 SIENYRDAKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAH 114 >gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5] gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 43/329 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 QGA+ +V S+A S + I V+ + L R +AV G G Sbjct: 62 QGADLVVYSTALSKDNVERVEAEKLNIPVLHRAQMLARLLNER-------KGVAVAGAHG 114 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ +S + + + G+ +F IG I + + + + +G H Sbjct: 115 KTTTSSMIALVMEECGVDPTFIIG--GEIMNVGTNAK----------------AGEG-EH 155 Query: 185 VSVEA-SSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 V EA S G L H G+ L N+ DH++ ++ A F + + Sbjct: 156 VVAEADESDGSFLQYHPWLGVVL------NIEADHLENYEGDFNRLKAAYVQFLSQIKAD 209 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDF 300 A++ ADD + ++ + C V + G + + ++ T+ G + Sbjct: 210 GTAVVCADDNNIQAILP---DLKCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMEL 266 Query: 301 DFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359 + +PG+ VYNA+ C+ GI ++E + K + RF+ +G + G + Sbjct: 267 GTVELSVPGKHNVYNAMATVICCLKSGISFEAIVEAIVKFNGAKRRFQVLG-EAEGILVI 325 Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF 388 DYAH +E + + T RII VF Sbjct: 326 DDYAHHPTEIEATISAAKA-TGKRIIAVF 353 >gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Corynebacterium amycolatum SK46] Length = 508 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 32/241 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-----------GAEAIVVSSAYSLQDFSA 84 DSR I+ G +F+A+ G + DGH FI QA+A G A+VV QD +A Sbjct: 33 DSRKIREGSLFLALPGARVDGHDFIDQAVAAGATMALAARDVGQPAVVVKP-LGKQDSNA 91 Query: 85 TIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 ++ P V++ K L K +++ VTG++GK+S + + + Sbjct: 92 DAFAHDPDGSGAAVLEALGKLARYVVDELK-KDQLHVVGVTGSAGKTSTKDMMATLLRTD 150 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G + G + TP YL ++ +S++G+ HV+ H Sbjct: 151 GPTVAPKGSFNNEIGHPYTVLQCTPETKYL---VAEMSARGIGHVA----------HLAR 197 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMK 258 G+ N+G H+ +++ AK L E L E A++ ADD Y + Sbjct: 198 IAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAAEQGGVAVLNADDDYVTGMAP 257 Query: 259 R 259 R Sbjct: 258 R 258 >gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium HTCC2150] gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium HTCC2150] Length = 463 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 D P+PGE V NAL A + +G+ A + LE V RF VG GG I + Sbjct: 277 DCSLPMPGEHNVTNALAAVAVARHLGMKKAEIRTALENFGGVNRRFTRVG--EVGGAIVI 334 Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVV 387 DYAH + L+ R T+GR+I V Sbjct: 335 DDYAHHPVEIAAALRAARQSTTGRVIAV 362 >gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria ATCC 35937] gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria ATCC 35937] Length = 477 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 126/331 (38%), Gaps = 42/331 (12%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTS 124 G + +VVSSA IR + P L+ +++ + + + + +AV GT Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRRGIAVAGTH 124 Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 GK++ S + GL PT I L A + G Sbjct: 125 GKTTTTSLAAAVLSEGGLD-----PTFVIGG-------------QLLAAGANAKLGGGQW 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 + EA RL+ + + TN+ DH++ + A A F + LP A Sbjct: 167 LVAEADESDGSFLRLNPLMAV---ITNIDSDHLENYGNDFARVQAAFAEFLQRLPFYGLA 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302 ++ DD EV A V+S G + + + V + + T+ + EG Sbjct: 224 LLCIDD---PEVAALAGKTPRHVMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPV 280 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360 LPG V NAL AA + +G++ + LE + RF +G T S G R+ V Sbjct: 281 TLALPGRHNVLNALAAAAIGWQLGVEPQTIARALENFAGIGRRFNDLGEVTTSTGARVQV 340 Query: 361 --DYAHTSNSLEMILKNIR-TITSGRIIVVF 388 DY H LE + R R++V F Sbjct: 341 VDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas naphthalenivorans CJ2] gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas naphthalenivorans CJ2] Length = 503 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 33/176 (18%) Query: 102 LSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTI 153 LSLFA L + ++ +TGT+GK++V S Q+ +R+G S + IGPT Sbjct: 103 LSLFAQALADLKEDLAYAPKVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIGPTLLD 162 Query: 154 SSFAQ-DNRLTTPS---PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 + + D PS P + LS GVT+ + + + Sbjct: 163 TLTGKLDEHARDPSAALPEFWVLELSSFQLDGVTNFEPDVA-----------------TV 205 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEVMKRAH 261 N+ +DH+D+H+T AY AK ++ LL + P ++ A A K R++ Sbjct: 206 LNITQDHLDWHETLPAYAAAKSHVYGRSGLMLLNRNDPLVMTAVPALVKGKPGRSY 261 >gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 513 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 36/143 (25%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQ 158 ++L A R + +LA+TGT+GK++V S Q+ +G + + IGPT + + Q Sbjct: 116 MALEALRTVRAYQPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAGNIGPT-LLDTLTQ 174 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-------N 211 + T +++ +E SS LD AGSF N Sbjct: 175 HLQADTLPDVWV----------------LELSSFQLDA---------AGSFEPTAAVVLN 209 Query: 212 LGRDHIDYHQTQQAYFNAKMRLF 234 + +DH+D+H + QAY AK R+F Sbjct: 210 VTQDHLDWHGSMQAYAGAKARIF 232 >gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp. JS666] gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp. JS666] Length = 587 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 28/138 (20%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 +LA+TGT+GK++V S V Q+ QR+G + + IGPT L Sbjct: 209 VLAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPT------------------LLDTL 250 Query: 174 LSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 ++L + + V V E SS L + + A N+ +DH+D+H AY AK R Sbjct: 251 SAHLDADTLPQVWVLELSSFQLADAQ--DFEPTAAVVLNVTQDHLDWHGDMDAYVAAKAR 308 Query: 233 LFEE----LLPKESPAII 246 +F LL ++ P ++ Sbjct: 309 IFGRSTFMLLNRDDPRVM 326 >gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp. EE-36] gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp. EE-36] Length = 467 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 109/276 (39%), Gaps = 40/276 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+ ++ V I + +G PT + + P+ Sbjct: 122 IIAITGSNGKSTTSALVHHILKHAGR------PTQLAGNIGRGVLDIEPA---------- 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + V +E SS+ D R + FTNL DH+D H YF AK RLF E Sbjct: 166 IDGEVVV---LELSSYQTDLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAE 220 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLK-KVCAIHNKQQVTI 293 P A+I D+ + + + RV+ V K L +V A K ++ Sbjct: 221 GGPDR--AVIGVDEPEGRFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFA--RKGFLSE 276 Query: 294 SVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 GK D + LPG NA A C +G ++ +P R + Sbjct: 277 YRGGKQIGSIDLRSITGLPGAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQT 336 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMI-----LKNIRTI 379 VG GG +V+ + +N + +NIR I Sbjct: 337 VG--EAGGVRFVNDSKATNVDSAVKALAAFRNIRWI 370 >gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Streptomyces venezuelae ATCC 10712] Length = 474 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 32/229 (13%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG +F A G DGH + +A+A GA A++ + + P LVV Sbjct: 34 DSREVRAGSLFAAFAGEHVDGHDYAERAVAAGAVAVLAARPVGV-----------PALVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 D+ + L A + + +++A+TG++GK+S + Q+ R + + G Sbjct: 83 DDVQTALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLDRHAPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSYL-SSQGVTHVSVEASSHGLDQHR-LDGIKLIA-GSFTNL 212 + +N + P L+ L +S H+ +E + G+ R L G+ G N+ Sbjct: 136 -SLNNEIGLP--------LTALRASDETRHLVLEMGARGIGHIRYLTGLTPPRIGLVLNV 186 Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADDAYSKEVMKR 259 G HI ++ AK L E L E A++ ADD + + R Sbjct: 187 GTAHIGEFGGREQIAEAKGELVEALPAAEDGGVAVLNADDPLVRAMASR 235 >gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia psychrerythraea 34H] gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia psychrerythraea 34H] Length = 471 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 143/349 (40%), Gaps = 58/349 (16%) Query: 62 QAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119 Q++ A+ I+ S L + +A I N LV+ + F + SR+ P +LA Sbjct: 70 QSLISSADIIITSPGIDLVSEGITALIPENC--LVIGDVELFCLVNNSRI---SPMKMLA 124 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 VTG++GKS+V S + + + G+++ G + P L + Y +S Sbjct: 125 VTGSNGKSTVVSLLASLAKAIGVNAALAG------------NIGEPILNLLHRENVY-NS 171 Query: 180 QGVTH---VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 Q V VE SS L+ L + IA S NL DH+D H+T Y K ++ Sbjct: 172 QLANQPDIVIVELSSFQLE--TLSSMHAIAASVLNLSDDHLDRHKTLANYQAIKQSIY-- 227 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------QQ 290 P+ A++ +D S ++ A ++S G + AI NK +Q Sbjct: 228 --PQAKIAVVSREDQASNTLV-----AAQEIISFGLNKPEQDCFGLQAIDNKMVMMFGEQ 280 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 IS++ PL G N + A L + G + + E+L + R + V Sbjct: 281 ALISIDE------LPLAGMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRCQRVA 334 Query: 351 TNSRGGRIYVDYAHTSN------SLEMILKNIRTITSGRIIVVFGCGGD 393 + Y+ + + S +L I + T+T G+ ++ GGD Sbjct: 335 SED-----YIQWINDSKATNVGATLAAITGLVPTLT-GQNKLILIAGGD 377 >gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Dichelobacter nodosus VCS1703A] Length = 444 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 12/124 (9%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 WR EVS+D+R + AG +F+A+ G G F+ A +GA A++V + Sbjct: 24 WRAL---EVSTDTRTLTAGQLFIALRGEHFCGEDFLQTAQERGAVAVIVQEYREI----- 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 + P +VV++T L + A+ + I+ +TGT+GK+S + +I G + Sbjct: 76 ----DIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKTSTKEMLYRILSAQGKTL 131 Query: 145 FQIG 148 +G Sbjct: 132 ATVG 135 >gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM 6192] Length = 470 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 148/385 (38%), Gaps = 65/385 (16%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA----T 85 I V+ DSR + G +FV + G DGHL++ +A +GA A +V + SA Sbjct: 32 IRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAFQRGASAALVQETVFSEAGSALLKHV 91 Query: 86 IRSNTPILVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQ--------QI 136 +++ +LVV +T + L I + VTG+SGK+S ++ ++ Sbjct: 92 VQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIGVTGSSGKTSTKEMLRAVLSLHYSRV 151 Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196 G + +IG +I ++ + + G+ HV Sbjct: 152 WATEGNLNSEIGVPLSILGIREEPEVV-------------ICEMGIDHVG---------- 188 Query: 197 HRLDGIKLIA----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252 +D + I T +G H++ T++ K ++F S I D+ + Sbjct: 189 -EMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS-FDDRSVGFIPEDEEF 246 Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLP-- 307 VL G++G F+ + + +EG + PL Sbjct: 247 ------------FHVLVEGWRGTFLPYGPATVEGFEGWESRGLEGVILSWKGLRIPLQGY 294 Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 GE V NAL L +G+ ++V E L+ + GR E GG ++ + +N Sbjct: 295 GEHMVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGEL---KEIGGVWFLVDCYNAN 351 Query: 368 --SLEMILKNIRTITS-GRIIVVFG 389 S+ L+ +R + R IVV G Sbjct: 352 PESMRASLEGVRGLKGIRRRIVVLG 376 >gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus acidophilus 30SC] gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/327 (20%), Positives = 124/327 (37%), Gaps = 41/327 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G +FV + G + DGH F+ AI+ GA A + + + N Sbjct: 24 ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VD+ + A K ++ +TG++GK++ V + + F + Sbjct: 77 IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++F +N + P I L + + + + G H + Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265 T +G HI++ T+ +AKM + + L ++ I D+ +E K+ G Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAKKLDQVKATFGF 242 Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R V + G++ H T ++ + F P+ G+ V NA+ A + Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAISV 290 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348 G + L R E+ Sbjct: 291 GRHFGESDEEIASSLSNFKPTANRMEW 317 >gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae D-4968] gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae D-4968] Length = 458 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/333 (21%), Positives = 132/333 (39%), Gaps = 44/333 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+ +V SSA + I V+ ++ A + +H +AV GT G Sbjct: 62 KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA----AMLAELMRFRHG---IAVAGTHG 114 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S V + GL SF IG ++S + +L SP ++ +A +S Sbjct: 115 KTTTTSLVSSVLAEGGLDPSFVIG--GKLNSLGINAQLGQ-SPYFVVEADESDAS----- 166 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +K + TN+ DH+ ++ F LP A Sbjct: 167 --------------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 212 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDF 302 ++ DD ++++ L+ G+ + H + + N+ + T+ + K + Sbjct: 213 VVCIDDPEVRKILPFIERP---TLTYGFTEE-AHYRAIDWTQNELISEFTV-IRPKSYSP 267 Query: 303 L---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGR 357 L F PG V NAL + + +G+D ++ LEK V RF+ +G +G Sbjct: 268 LKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSA 327 Query: 358 IYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 + V DY H + + R + + R++ VF Sbjct: 328 LVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVF 360 >gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus MM3] Length = 451 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/361 (20%), Positives = 149/361 (41%), Gaps = 41/361 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V DS+ I+ G +FV I+ K DGH ++ +A+ GA A + +Y T Sbjct: 23 EIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 PI+ VD+T L A + ++ +TG++GK++V + I + G Sbjct: 76 GMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTVKDIISTILSTTHRVHKTKG 135 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + QIG TI +D +L + + ++S+ A Sbjct: 136 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSIIAQPD--------- 179 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 I +I T +G H++ +++ AK+ + + L K+ +Y D K Sbjct: 180 IVII----TMIGHSHLETLGSKEEIAKAKLEIIDGL--KDEGLCLYNGDEPLLLKNKNLS 233 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + C+ Y L ++ V + + PL G+ + NA+V + Sbjct: 234 SITCKAFGEKYTN---DLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNAIVGIAV 290 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS-NSLEMILKNIRTIT 380 + + + + L ++++ RF+F+ T G I D + S +S++ ++ ++T+ Sbjct: 291 GQFYNVPTEKIQKALRQVNITHMRFQFL-TAKTGFTIINDAWNASPSSMKAAIETLQTLN 349 Query: 381 S 381 + Sbjct: 350 A 350 >gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella putrefaciens 200] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + LFA + + P ++ +TG++GKS+V + V ++ + +G++ A Sbjct: 97 VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220 + P AL LS V +E SS L+ H L+ +A + N+ DH+D + Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 AY AK+RL+ +S +II+ DDA + N+ G + Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H + ++ E L G N L A L A+G+D ++ + Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + R E VG +GG YV+ + +N Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323 >gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS9429] gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS2096] Length = 463 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + DSR I G +F+ + G + DGH FI A GA A FS Sbjct: 26 LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELPG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142 TP L+V++ K A K +++AVTG++GK+S V S + + G Sbjct: 75 TPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ D + +E + Q + I Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167 Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250 +L++ T +G H++Y ++ KM++ + + S I+ A D Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 Y E V+ G Q + V I +K +T + PLPG+ Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368 + NA+VAA + + + ++ L+ + + R E+ + G I D Y + Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331 Query: 369 LEMILK---NIRTITSGRIIVVFG 389 + +IL+ NI G+ I V Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355 >gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus HTCC2654] gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium HTCC2654] Length = 467 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 76/327 (23%), Positives = 133/327 (40%), Gaps = 40/327 (12%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 + AE +V+SSA I+ P L R + + + + ++ +AV GT Sbjct: 70 ENAEVVVISSA---------IKPGNPELDTARARGLPVVRRAEMLAELMRLKSNIAVAGT 120 Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183 GK++ + V ++ G+ I I ++ + R+ QG Sbjct: 121 HGKTTTTTLVAELLVAGGIDPTVIN-GGIIHAYGSNARM----------------GQGEW 163 Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243 V VEA +RL I TN+ +H+D+ T++A + F +P Sbjct: 164 MV-VEADESDGTFNRLPATIAI---VTNIDPEHMDHWGTEEA-LHKGFYDFVSNIPFYGL 218 Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDF 300 A+ DDA + ++ + + RV++ G+ + ++ V ++ + +G+ Sbjct: 219 AVCCTDDADVQTLVGKITDR--RVVTFGFNAQ-ADVRAVNLTYDAGIAHFDIVLPDGRID 275 Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360 P+PG+ V NAL A + +G+ A + E L K V RF VG + I Sbjct: 276 GCTLPMPGDHNVSNALAAVAVSRHLGMKFAEIREALAKFGGVNRRFTRVGMWND-VPIID 334 Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV 387 DY H + +LK R GR+I V Sbjct: 335 DYGHHPVEIAAVLKAARQAVKGRVIAV 361 >gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1] gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1] Length = 477 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 48/334 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121 G + +VVSSA IR + P L+ +++ ++ A + +H +AV Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ S + + GL PT I + A A + L + Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + VEA RL+ + + TN+ DH++ + + F + LP Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299 A++ DD E++ +A V++ G + + V + T+ + EGK Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356 LPG V NAL A+ + +G+ ++ L+ + RF +G + G Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337 Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R+ DY H LE + R R++V F Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 476 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 16/183 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266 TN+ DH+D++ + +A+ +A +R EL+ +I +DD ++ V R R Sbjct: 188 TNVDADHLDHYGSHEAFDDAFVRFASAASELV------VISSDDPGARRVTARIEG---R 238 Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325 V++ G I + + T++ +G +PG NA A + + + Sbjct: 239 VVTFGEDPAADIRITDIV-TDGPVAFTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGL 297 Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRI 384 G+D + L RFE RG +Y DYAH + L+ RT+ GRI Sbjct: 298 GVDPDDAIAGLAGFSGTGRRFEL-HAEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRI 356 Query: 385 IVV 387 I V Sbjct: 357 IAV 359 >gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 455 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%) Query: 86 IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I ++ Sbjct: 73 IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G++ F IG +SS + ++ +A Y S+ H Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I ++ NL DH D + A + +PK AI DD EV+ R Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + R+ ++ G+ + ++ Q + G + +PL G+F V N L A Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAI 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G++ + + LE+ V R E V +N G +Y D+AH ++ + ++ Sbjct: 293 AATWNAGVNPEVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK-- 349 Query: 380 TSGR 383 SGR Sbjct: 350 RSGR 353 >gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 443 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 76/313 (24%), Positives = 128/313 (40%), Gaps = 45/313 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++ +TG++GK++ S + I + +G + +G I ++L+ Sbjct: 104 MVCITGSNGKTTTTSLIYHIFKTAG---YNVGLGGNI-----------------GRSLAL 143 Query: 177 LSSQGVTHVSV-EASSHGL-DQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRL 233 ++G V E SS L D +R K N+ DH+D Y+ Q Y +AKMR+ Sbjct: 144 QVAEGAHDWYVIELSSFQLEDMYRF---KAHIAVLLNITPDHLDRYNYRMQGYVDAKMRI 200 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293 + L P++ I + DD K +++ ++ V + + A QVT+ Sbjct: 201 LQNLTPQDY-FIYWGDDPVVKPELQK-YDVSAHVCPFAENSE----TGMSAYVADGQVTL 254 Query: 294 SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 DF P LPG+ +YN+L AA A GI ++V + L V R E Sbjct: 255 PAP---LDFTMPQDRLSLPGKHNLYNSLAAALAARAAGIPQSVVEQGLSDFPGVEHRMER 311 Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408 V T I A ++ L+ + T T I++ G G D+ PI + Sbjct: 312 VATMHGVNYINDSKATNVDACRYALEAMNTPT----ILIIG-GKDKGNDYEPIKELVKEK 366 Query: 409 LADIAIVTDDNPR 421 A + + DN + Sbjct: 367 CAGLVYLGADNTK 379 >gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa Temecula1] gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23] gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1] gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23] gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 477 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/334 (22%), Positives = 130/334 (38%), Gaps = 48/334 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121 G + +VVSSA IR + P L+ +++ ++ A + +H +AV Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ S + + GL PT I + A A + L + Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + VEA RL+ + + TN+ DH++ + + F + LP Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299 A++ DD E++ +A V++ G + + V + T+ + EGK Sbjct: 221 GLALLCLDDPEVAELVGKARR---HVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKV 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356 LPG V NAL A+ + +G+ ++ L+ + RF +G + G Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337 Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R+ DY H LE + R R++V F Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase [Thermaerobacter marianensis DSM 12885] Length = 477 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 26/221 (11%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRSNTPIL 93 DSR ++ G +F A+ G + DGH F+ QA+A GA V++ A L D + T ++ Sbjct: 31 DSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLAEVLPDGAP---PGTAVV 87 Query: 94 VVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152 V +TR+ L+ A + + ++ +TG+ GK++ + R F + + Sbjct: 88 EVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLAR----RFAV--LKS 141 Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQ-HRLDGI-KLIAGSF 209 ++ D L L+ L + V+V E + GL + RL I + G Sbjct: 142 AGNYNTDVGLP----------LTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEPDVGVV 191 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 T + H+++ + + AK L E LP++ AI+ A D Sbjct: 192 TVVAESHLEFLGSLERVAQAKGELVEA-LPEDGVAILNAGD 231 >gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 461 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 2/107 (1%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 V+ DSR + +G +FVA+ GN+ DGH F+ QA+++GA ++V + L++ + Sbjct: 30 VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVEIS-KLEEIRPGL-GGASC 87 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 L V + L+ AS ++ +TG+ GK++ + + R Sbjct: 88 LAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVILSLLGR 134 >gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Prochlorococcus marinus str. MIT 9211] Length = 462 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 140/350 (40%), Gaps = 58/350 (16%) Query: 13 ELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70 ELIN L +P + + + V +DSR + G FV + G DGH F+ +A +GA+A Sbjct: 7 ELIN-LWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAKA 65 Query: 71 IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130 VVS +D + I N VD+T + A + ++AVTG+ GK++ Sbjct: 66 AVVS-----KDSTVQIPENLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTTR 120 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + G T +S +N + P I A S + +E + Sbjct: 121 ELITACLTTLG--------AITSTSDNNNNDIGVPQTILQAD----FSDAALI---LEMA 165 Query: 191 SHGLDQHRLDGIKLIAGS------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 GL + R +L S TN+G HI +++ AK + L P + Sbjct: 166 MRGLGEIR----RLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGT-V 220 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-------------QGKFIHLKKVCAIHNKQQV 291 II A D ++ R++ VG + + L V ++N Sbjct: 221 IIPAGDPLLDSILSEKWPG--RIIRVGLMPLGEEHTSASYIKKNAVDLLGVLDLNNN--- 275 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341 ++SV+ + PL G N ++A IA+ ++ + L ++ LHV Sbjct: 276 SLSVDKEALT--LPLEGMHNAVNFMLA----IAVALELGISLSNMNNLHV 319 >gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella sp. W3-18-1] gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp. W3-18-1] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 43/268 (16%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + LFA + + P ++ +TG++GKS+V + V ++ + +G++ A Sbjct: 97 VELFAREIADRKP-CVIGITGSNGKSTVTTLVGEMLREAGMA------------VAVGGN 143 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220 + P AL LS V +E SS L+ H L+ +A + N+ DH+D + Sbjct: 144 IGVP-------ALDLLSENAEIFV-LELSSFQLETTHSLN---CVASTCLNVTEDHMDRY 192 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279 AY AK+RL+ +S +II+ DDA + N+ G + Sbjct: 193 SDMDAYRKAKLRLYH-----QSRSIIFNRDDALTIPTEPMNQNSFGLAPPEGDEWGICDS 247 Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339 K H + ++ E L G N L A L A+G+D ++ + Sbjct: 248 K---IYHGRSEIMPITE-------VSLIGSHNHANLLAAMALVYAVGVDKQVMAKVARTF 297 Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367 + R E VG +GG YV+ + +N Sbjct: 298 TGLSHRCEVVGI--KGGVTYVNDSKATN 323 >gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 460 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/328 (19%), Positives = 134/328 (40%), Gaps = 39/328 (11%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V DS++++ G +FV I+ K DGH ++ +A+ GA A + +Y T Sbjct: 32 EIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 84 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS-------G 141 PI+ VD+T L A + ++ +TG++GK++V ++ I + + G Sbjct: 85 GVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILRSTYRVHKTKG 144 Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201 + QIG TI +D +L + + ++S A Sbjct: 145 NFNSQIGLPLTILEMKRDTE-------FLILEMGMSEKGQIRNLSRIAQPD--------- 188 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T +G+ H++ +++ AK+ + + L +E+ +Y D + Sbjct: 189 ----VAVITMIGQSHLETLGSRKEIAKAKLEIIDGL--RENGLFLYNGDEPLLSRNNKTS 242 Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 + C+ + L ++ V + + PL G+ ++N +V + Sbjct: 243 SVNCKTFG---EKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV 299 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFV 349 + + + E L+++++ RF+F+ Sbjct: 300 GQFSKVPTEKIQEALQQINITQMRFQFL 327 >gi|189220191|ref|YP_001940831.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum V4] gi|189187049|gb|ACD84234.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum V4] Length = 483 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 94/440 (21%), Positives = 177/440 (40%), Gaps = 51/440 (11%) Query: 55 DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA-----------TIRSNTPIL--VVDNTRKF 101 D +++ P + + I + Y Q+ I+ P L V++ F Sbjct: 42 DENVYPPLSTFLTQQGISIKEGYKAQNLPQDRAGTVVVVGNVIKRGNPELEAVLEKKYLF 101 Query: 102 LSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQ 158 LSL + + +NI+ V+GT GK++ +S + I + + L+ SF IG +F Sbjct: 102 LSLPEVLKFFFLQGKQNIV-VSGTHGKTTTSSLLAWIFESASLNPSFLIG--GLPKNFTS 158 Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218 R T Y +G + + H L +I N+ DH D Sbjct: 159 GCRYTRGD---------YWILEGDEYDTAYFDKRSKFLHYLPQTVII----NNIEYDHAD 205 Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278 A RL + L+P+ II DD +++ A ++ V +VG+ GK Sbjct: 206 IFANLGEILLAFKRLIQ-LIPRNGHLIIPEDDP---NIVELAKSSLAPVYTVGF-GKEAE 260 Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 + +++++ + G++F P+PGE+ V NA + GI + + Sbjct: 261 FRITDVLYDQRGSRFRMLGEEF--FLPVPGEYNVRNAAMCLAAAKLYGIKPEQISQGFAS 318 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGD---- 393 V R E +G + G ++ D+ H ++ ++ +R S R+ VF + Sbjct: 319 FLGVKRRLEVLG-EACGIQVLDDFGHHPTAIYKTIQAVRQRYPSRRLWAVFEPRSNTTRR 377 Query: 394 ---RDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEI-IHGIPGFIEKGNRIEA 448 + + + + G + ++++A +P PE+I E+ GIP F + E Sbjct: 378 AVFQQELPQALAGADGVVISEVANKDGLSPSERLKPEQIAQELGKKGIPSFFCASPQ-EI 436 Query: 449 IRTAIEMLNKQDVLVVAGKG 468 ++ +E+L D++V G Sbjct: 437 LQKLLEVLRAGDIVVFFSNG 456 >gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Lactobacillus amylovorus GRL 1112] Length = 455 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/327 (20%), Positives = 124/327 (37%), Gaps = 41/327 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ DSR I G +FV + G + DGH F+ AI+ GA A + + + N Sbjct: 24 ITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASATLWKKGHPNK------PEN 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 ++ VD+ + A K ++ +TG++GK++ V + + F + Sbjct: 77 IAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVAAVLSK----RFNVHK 132 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T ++F +N + P I L + + + + G H + Sbjct: 133 TQ--ANF--NNEIGVPMTI-----LEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVAVI 183 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA----GC 265 T +G HI++ T+ +AKM + + L ++ I D+ +E K+ G Sbjct: 184 TMIGEAHIEFFGTRDKIADAKMEI-TDFLREDGEFIFNGDEPLLQERAKKLDQVKATFGF 242 Query: 266 R----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321 R V + G++ H T ++ + F P+ G+ V NA+ A + Sbjct: 243 RDEDTVHATGFKSYMHH------------ATFTINDSEQKFSIPMIGKHNVSNAMAAISV 290 Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEF 348 G + L R E+ Sbjct: 291 GRHFGESDEEIASSLSNFKPTANRMEW 317 >gi|311742800|ref|ZP_07716609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium marinum DSM 15272] gi|311314428|gb|EFQ84336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium marinum DSM 15272] Length = 495 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 30/200 (15%) Query: 75 SAYSLQDFSATIRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVA 130 SA +L S +TPILV R A RL G+ L VTGT+GK++ Sbjct: 93 SAPTLVVTSPGWSPSTPILVEAAGRGLPVWSEVELAWRLRGEDAAPWLGVTGTNGKTTTV 152 Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190 + I + GL S +G P+ A + + ++VE S Sbjct: 153 QMLDAILRADGLRSAAVG--------------NVGRPVLEA----VMDPEPYDVLAVELS 194 Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--A 248 S+ L H + A + N+ DH+D+H + AY AK R+++ A +Y Sbjct: 195 SYQL--HWSSSLSCRASTVLNVAPDHLDWHGSHVAYAAAKGRIYQH----AQVACVYNVQ 248 Query: 249 DDAYSKEVMKRAHNAGCRVL 268 D A + V+ GCR + Sbjct: 249 DPATEQLVVDAEVVEGCRAI 268 >gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16] Length = 432 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 159/365 (43%), Gaps = 38/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91 V++DSR+ AG +F+A+ G +G+ F QA+ G A AIV + Y+ ++ N Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I++VDN + L A+ + ++ +TGT+GK++ + + +S + G Sbjct: 69 IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +N + P + KA L+ + + A+ G + + + G TN Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G+ H++ + + K L++ L KE S I D+AY +M AH G ++ Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIDHDNAY---LMDIAH--GLNLIPY 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326 G + V N +T + GKD D L GE+ NAL A + G Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384 +++ + E L R + T + +D A+ +N M+ L+N R +T + Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVKKK 345 Query: 385 IVVFG 389 +++ G Sbjct: 346 MLILG 350 >gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma proteobacterium HTCC5015] Length = 452 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 146/353 (41%), Gaps = 54/353 (15%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 D+R +Q G +F A+ G + DGH F+ QA GA A VV L+D + P VV Sbjct: 30 DTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVER--YLEDV------DLPQCVV 81 Query: 96 DNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154 + R L A+ + E +A+TG++GK++V ++QI G + +T Sbjct: 82 SDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGST------CATQG 135 Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTH----VSVEASSHGLDQHRLDGIKLIAGSFT 210 +F D L P+ L + G H + + AS G ++ K Sbjct: 136 NFNNDLGL----PLTLLRV-------GREHQFAVLEMGASQFGEIEYLTQVAKPDVALVN 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 N G H+D + K ++ L K AII ADD ++ R+ A V+S Sbjct: 185 NAGPAHLDGFKDISGVARGKGEIYNGLGEK-GIAIINADDIHAD--YWRSLCADKTVVSF 241 Query: 271 GY------QGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLFPLPGEFQVYNALVAA 319 G QG++ K + + V G D PL G NA+ AA Sbjct: 242 GLENSADVQGQWSSQTKT--------LNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAA 293 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 + +A G+D V + L K+ V GR V +RGG +D + +N ++ Sbjct: 294 AVALAAGVDLDAVEKGLSKVRPVAGR--MVPMTARGGFYLIDDTYNANPASLM 344 >gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sulfitobacter sp. NAS-14.1] Length = 478 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 49/300 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92 VS D+R + G +FVA+ + DGH F+ A+ +GA A +V+ + + P+ Sbjct: 26 VSIDTRTLAPGDLFVAL-KDVRDGHDFVAMALEKGAGAALVTH------VPEGVAEDAPL 78 Query: 93 LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-----VASFVQQICQRSGLSSF-- 145 L+V++ K L + + ++AVTG+ GK+S +A F Q + + S+ Sbjct: 79 LIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSYNN 138 Query: 146 QIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 G T++ D + P I L+ ++ V V+ A+ H Sbjct: 139 HWGVPLTLARMPADTEYAVIEIGMNHPGEI---SPLAQMAKPDVAMVTTVAAVH------ 189 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 +F N+ ++ K +F+ L P A+I AD ++ +M Sbjct: 190 -------LEAFANVAEIAVE-----------KAAVFDGLQPG-GVAVINADIEHAAILMA 230 Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 +A + R + G G L V + V +G F PG NAL A Sbjct: 231 KAVDRRLREVEFGEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGA 290 >gi|303327350|ref|ZP_07357791.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio sp. 3_1_syn3] gi|302862290|gb|EFL85223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio sp. 3_1_syn3] Length = 434 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 64/279 (22%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174 E +LAVTGTSGK++ AS + Q G + F G + TP Y+ Sbjct: 119 EPVLAVTGTSGKTTTASLAAAMLQAQGYTVFLGG------------NIGTPLSEYV---- 162 Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234 LS + + +E SS L AG N+ +H+DYH+ Y AK RLF Sbjct: 163 --LSGRKADVLVLEISSFQLQA--CSTFCPRAGVLLNITPNHLDYHKDMAEYTEAKFRLF 218 Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 + A++ AD L QG + ++V +++ Sbjct: 219 -RCQDEGDLAVLGAD------------------LHDPAQGFNLRARRVWVRASER----- 254 Query: 295 VEGKDFDFLFP---LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 FP LPG +N A C G+ A + + +P R E V Sbjct: 255 ---------FPQSGLPGAHNKFNEEAAWQACRFFGVSEANAARAVARFKPLPHRLELV-- 303 Query: 352 NSRGGRIYVDYAH--TSNSLEMIL----KNIRTITSGRI 384 R G +YV+ + T +SL++ L + +R + G+ Sbjct: 304 RERCGVLYVNDSKCTTVSSLKVALQAFDRPLRLLCGGKF 342 >gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM 12804] gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii] Length = 468 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 39/261 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +AV GT GK++ S V + L++ + PT F RLT+ A A + L Sbjct: 108 IAVAGTHGKTTTTSLVASV-----LAAGDLDPT-----FVIGGRLTS------AGANARL 151 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 QG ++ VEA D L+ + ++A TN+ DH+D + A + F + Sbjct: 152 G-QG-EYIVVEADES--DASFLNLLPVMA-IVTNIDADHMDTYGHDVARLKSAFIEFTQR 206 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 LP A++ ADDA +E+M R ++ H++ + ++ +V+ Sbjct: 207 LPFYGSAVLCADDANVREIMPFV----SRPITTYGLSPDAHVRGENVQADGTRMRFTVQR 262 Query: 298 KDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---- 346 +D P LPG V NAL A + +G+ + + L V RF Sbjct: 263 QDRATALPPLAIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTG 322 Query: 347 EFVGTNSRGGRIYV---DYAH 364 EF + GG + DY H Sbjct: 323 EFPVPAAHGGGTFTLIDDYGH 343 >gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1] gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/334 (23%), Positives = 130/334 (38%), Gaps = 48/334 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-----LSLFASRLYGKHPENILAVT 121 G + +VVSSA IR + P L+ +++ ++ A + +H +AV Sbjct: 74 GTDCVVVSSA---------IREDNPELMEARSQRIPIMPRAAMLAELMRFRHG---IAVA 121 Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181 GT GK++ S + + GL PT I + A A + L + Sbjct: 122 GTHGKTTTTSLIAAVLSEGGLD-----PTFVIGG-----------QLLAAGANAKLGAG- 164 Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241 + VEA RL+ + + TN+ DH++ + + F + LP Sbjct: 165 -QWLVVEADESDGSFLRLNPLVAV---VTNIDADHLENYGNDFSRIKDAFTEFLQRLPFY 220 Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISV-EGKD 299 A++ DD EV + A A V++ G + + V + T+ + EGK Sbjct: 221 GLALLCLDD---PEVAELAGKARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKV 277 Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356 LPG V NAL A+ + +G+ ++ L+ + RF +G + G Sbjct: 278 IPVTLALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGAC 337 Query: 357 -RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388 R+ DY H LE + R R++V F Sbjct: 338 VRLIDDYGHHPRELEAVFAAARGGWPDKRLVVAF 371 >gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase [Corynebacterium variabile DSM 44702] Length = 505 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 34/235 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF------------- 82 DSR + AG +++A+ G + DGH F+ A+ GA ++ +L + Sbjct: 34 DSRRVTAGSVYMALPGARVDGHDFVGPALEAGAALVMAGRPTALPELLCPAVEEEQGTQR 93 Query: 83 SATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQICQ 138 +A+ N P + + +S A L ++ ++ VTG++GK+S + + Sbjct: 94 NASYLDNDPDGLGERVITAVSRLARHSTEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFS 153 Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA-KALSYLSSQGVTHVSVEASSHGLDQH 197 R G + I P ++ +N + P + A + YL V +S H Sbjct: 154 RDGET---IAPPGSL-----NNEIGHPYTVLKAGRTTKYL----VAEMSARGQGHIAHLA 201 Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP--AIIYADD 250 R+ ++ G N+G H+ +++ AK L E L P A++ ADD Sbjct: 202 RIAPPRI--GVVLNVGTAHLGEFGSREGIAQAKGELVEALPPAAEGGVAVLNADD 254 >gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae NSW150] gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae NSW150] Length = 469 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/333 (21%), Positives = 132/333 (39%), Gaps = 44/333 (13%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125 +GA+ +V SSA + I V+ ++ A + +H +AV GT G Sbjct: 73 KGADVVVRSSAVEWNNPEIVAAREQMIPVIPRA----AMLAELMRFRHG---IAVAGTHG 125 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S V + GL SF IG ++S + +L SP ++ +A +S Sbjct: 126 KTTTTSLVSSVLAEGGLDPSFVIG--GKLNSLGINAQLGQ-SPYFVVEADESDAS----- 177 Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 +K + TN+ DH+ ++ F LP A Sbjct: 178 --------------FLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSA 223 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDF 302 ++ DD ++++ L+ G+ + H + + N+ + T+ + K + Sbjct: 224 VVCIDDPEVRKILPFIERP---TLTYGFTEE-AHYRAIDWTQNELISEFTV-IRPKSYSP 278 Query: 303 L---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGR 357 L F PG V NAL + + +G+D ++ LEK V RF+ +G +G Sbjct: 279 LKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSA 338 Query: 358 IYV-DYAHTSNSLEMILKNIRTI-TSGRIIVVF 388 + V DY H + + R + + R++ VF Sbjct: 339 LVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVF 371 >gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 486 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 108/444 (24%), Positives = 167/444 (37%), Gaps = 91/444 (20%) Query: 68 AEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSG 125 AE +VVSSA IR + P LV R + L A+ +AV+GT G Sbjct: 75 AETLVVSSA---------IREDNPELVEARRRGLRVLPRAAALGALLLGREGVAVSGTHG 125 Query: 126 KSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184 K++ S V + Q G + IG + D G+ Sbjct: 126 KTTTTSMVAVVLQHVGADPGYVIGGKLVTTGLGAD--------------------AGIGE 165 Query: 185 V-SVEASSHGLDQHRLDGIKLIAGS----FTNLGRDHID-YHQTQQAYFNAKMRLFEELL 238 V +VEA DG L+ TN+ DH+D Y ++ + N F + Sbjct: 166 VIAVEADES-------DGSFLMLSPKIAVVTNVEADHLDNYSGIEEIHAN-----FASFV 213 Query: 239 PK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTI-SV 295 + E ++ DD ++ V + A G RVL+ G + + +V A + TI + Sbjct: 214 DRVERTLVVGVDDPGARRVAELARERGKRVLTYGEAEDADYRVTRVRARGFTTEFTIRTA 273 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 G+ D +PG V NA A + +G D + +E + RFE G + G Sbjct: 274 NGEPVDGQLAVPGRHNVLNAAAAVAVADELGHDLEVAVEGIADFAGAARRFEPKG-EAGG 332 Query: 356 GRIYVDYAHTSNSLEMILKNIRTI---------------TSGRIIVVFGCGGDRDQGKRP 400 +Y YAH +E L+ R GR++ +F + Sbjct: 333 VAVYDSYAHHPTEIEADLRATRAALESLAEEAREDGREHAGGRVVALFQP---HLYSRTR 389 Query: 401 IMGK---IALDLADIAIVTDDNPRSEDPEK-IRAEIIHG---------IPGFIEKGNRIE 447 I + AL LAD +VT+ EDPE + AE+I +PG R + Sbjct: 390 IFAEEFAAALGLADEVVVTEVYAAREDPEPGVTAELITSRVAHDRVWYVPG------RDD 443 Query: 448 AIRTAIEMLNKQDVLVVAGKGHET 471 A+ E+ D+++ G G T Sbjct: 444 AVLRVAELAGPGDIVLTMGAGDVT 467 >gi|300777756|ref|ZP_07087614.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum ATCC 35910] gi|300503266|gb|EFK34406.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum ATCC 35910] Length = 876 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 40/346 (11%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+AVTGT+GK++ + I + +G +++G T++ + Q+ L+ A Sbjct: 484 IIAVTGTNGKTTTTRLISHIVKSNG---YRVGFTTSDGIYIQNTMLSKGDTTGPLSAEFI 540 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRL 233 L V +E + G+ + L + G TN+ DH+ D H + R+ Sbjct: 541 LKDPTVEFAVLETARGGILRSGLGFSQCDIGVLTNIEEDHLGMNDIHTLKD--LTRVKRV 598 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQ 289 + + K +++ AD+ YS +++ ++ + S+ KF K+ ++ + Sbjct: 599 VLDSVKKSGWSVLNADNEYSMKIVNDL-DSNVAIFSMDENNPHIVKFAKEGKITCVYEEG 657 Query: 290 QVTISV--------EGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGID--SALVLEHLE 337 VTI + KDF F + N L A A GI+ S + + Sbjct: 658 FVTIKKGDWKIRIGKAKDFPITMEGKARFMIENVLAASLASYLYGFGIEDISNSLRTFIP 717 Query: 338 KLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMI---LKNIRTITSGRIIVVFGCG 391 + PGR F+F + ++ +D+AH + E I LKN+ ++ +I ++ G G Sbjct: 718 SAQLTPGRLNVFKF-----KNFKVLIDFAHNPSGYEAIEDYLKNVE--STKKIGIISGVG 770 Query: 392 GDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGI 436 RD R GKIA + D I I + + R ++I II G+ Sbjct: 771 DRRDNDIRE-CGKIAGRMFDHIIIRNEKHLRGRTEDEINGLIIEGM 815 >gi|19704788|ref|NP_604350.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|25008802|sp|Q8RDQ2|MURC_FUSNN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|19715125|gb|AAL95649.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 468 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-AHNAGCRVL 268 TN+ DH+D H N K + + + AII D KEV+ R Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIKFICHTQKEAIICLDCENLKEVVTRLPEEKTVTTY 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIG 326 S+ + I K + I +++ + K+ +F +PGE + N+L L G Sbjct: 238 SIKDESANIFAKNI-KIEDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLAFKFG 296 Query: 327 IDSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIR 377 + + E L K R++ + G ++ RI DYAH ++ LK I+ Sbjct: 297 VSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKRVRIVDDYAHHPTEIKATLKAIK 356 Query: 378 TITSGRIIVVF 388 +I + R++ +F Sbjct: 357 SIDTSRLVAIF 367 >gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Leeuwenhoekiella blandensis MED217] Length = 447 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 35/236 (14%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTP 91 +S+D+R I+ +F A+ G +G+ F QA+ GA A++ Y L+D Sbjct: 34 ISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKD--------KT 85 Query: 92 ILVVDNTRKFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150 ILV D + L A R Y P +LA+TG++GK++ + + + + T Sbjct: 86 ILVEDVLQTLQDLAHAHRKYLDIP--VLALTGSNGKTTTKELINSVLSK------KFKTT 137 Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS-VEASSHGLDQHRLDGIKLIA--- 206 +T + +N + P L+ LS T + VE ++ + + + + IA Sbjct: 138 ATQGNL--NNHIGVP--------LTLLSMNKNTEMGIVEMGANHIGE--IADLTAIAAPD 185 Query: 207 -GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 G TN G+ H++ + Q K L++ L+ + + DD E + H Sbjct: 186 FGYITNFGKAHLEGFGSVQGVIKGKSELYDYLIAHKGTLFLNLDDPIQAEKLGSTH 241 >gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus 16] gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio parahaemolyticus 16] Length = 441 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 47/257 (18%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V + + +GL ++G I A D L + +Y+ + S+ Sbjct: 112 VIAITGSNGKSTVTDLTGVVAKAAGL---KVGVGGNIGVPALD-LLAQDADLYVLELSSF 167 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S + L A +F NL DH+D ++ + Y AK+R+F+ Sbjct: 168 ---------QLETTSS---------LSLKAAAFLNLSEDHMDRYEGMEGYRQAKLRIFDH 209 Query: 237 LLPKESPAIIYADDAYS------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290 I+ ADD + K++++ + N QG+ + I Sbjct: 210 ----ADACIVNADDKATYPDVGDKKLIEFSLNGSADYHLAELQGQEFLFQGSAPIMPSSD 265 Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 +T L G + NALV L + +D +L L+ L+ + R + V Sbjct: 266 LT-------------LVGRHNIANALVVLALLSQVDVDLSLGLDALKSYSGLTHRCQVVA 312 Query: 351 TNSRGGRIYVDYAHTSN 367 N G +V+ + +N Sbjct: 313 DNQ--GIKWVNDSKATN 327 >gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter oxydans 621H] gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter oxydans 621H] Length = 476 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 22/154 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AVTGT+GKS+ + + + +G G T S AL Sbjct: 142 FIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPL 184 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L GV +E SS+ L+ RLD A NL DH+D H Y AK +F+ Sbjct: 185 LPDDGV--YVIEMSSYMLE--RLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 240 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + P + A+I DD + + + + + G +V+ + Sbjct: 241 MGPDDL-AVIGMDDDWCRAIASQVASRGVQVVEL 273 >gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens] gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens] Length = 455 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 29/304 (9%) Query: 86 IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I ++ Sbjct: 73 IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G++ F IG +SS + ++ +A Y S+ H Sbjct: 131 GMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHYR 179 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259 I ++ NL DH D + A + +PK AI DD EV+ R Sbjct: 180 PNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLSR 234 Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + R+ ++ G+ + ++ Q + G + +PL G+F V N L A Sbjct: 235 GQFS--RIETLALSGEAEWVAELIDDSGSQFNILHNGGVVAEVSWPLIGQFNVENGLAAI 292 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 G++ + + LE+ V R E V +N G +Y D+AH ++ + ++ Sbjct: 293 AATWNAGVNPMVAAKALEQFSPVKRRLE-VRSNRHGITVYDDFAHHPTAITKTIDALK-- 349 Query: 380 TSGR 383 SGR Sbjct: 350 RSGR 353 >gi|99035085|ref|ZP_01314874.1| hypothetical protein Wendoof_01000291 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 507 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 48/340 (14%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122 G A +S A + SA N ++ N K + + A + GK+ ++AV+G Sbjct: 86 GHNANNISQAQIVVHSSAIESDNVELIAAKNNNKTVLHRSDILAEIMKGKY---VIAVSG 142 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + + I SG I T T+ + S L + ++L Sbjct: 143 SSGKTTTTAMIASIFDHSG-----IDATVTVGGILNSYK----SNFKLGGSDTFL----- 188 Query: 183 THVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +EA D+ +K+ A T++ DHIDY+ T NA + Sbjct: 189 ----IEA-----DESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSA 239 Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------------KKVCAI 285 P + D + N R ++ I K C Sbjct: 240 VLPDSVDIDYDAGNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTE 299 Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + Q VT+ L G +V NAL A + I +GI A + + L + V R Sbjct: 300 MSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARR 359 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 F + + +G ++ DYAH N + L R+IT G++I Sbjct: 360 FSLIA-DIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 398 >gi|62900456|sp|Q5FUJ7|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase Length = 448 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 22/154 (14%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AVTGT+GKS+ + + + +G G T S AL Sbjct: 114 FIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGTAS-----------------LALPL 156 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L GV +E SS+ L+ RLD A NL DH+D H Y AK +F+ Sbjct: 157 LPDDGV--YVIEMSSYMLE--RLDRFHANAACLLNLTPDHLDRHGDMAGYAAAKAHVFDN 212 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + P + A+I DD + + + + + G +V+ + Sbjct: 213 MGPDDL-AVIGMDDDWCRAIASQVASRGVQVVEL 245 >gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105] Length = 1024 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 34/316 (10%) Query: 85 TIRSNTPILVVDNTRK---FLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRS 140 T+ + +LVV + + F+ A RL+ GK ++ VTG++GK++ + ++ S Sbjct: 641 TLPTTAGVLVVKSIHQAVIFMGRHARRLFTGK----LVGVTGSAGKTTTVAMLKHAFNDS 696 Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200 G I T R P +A L+ + S G ++ +E + + + + Sbjct: 697 G----HISAT----------RGNANLPYGVAWNLASMES-GTDYMILEIAIGRMKESAVL 741 Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 +A TN+G H+++H+T + K R+F L+ A+I D ++ A Sbjct: 742 ARPHVA-VVTNIGSAHLEFHKTIETIAKRKARIFWGLVDG-GIAVINRDTECFDLILHEA 799 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 + V++ G + ++ I++K ++V I VEG+ + F + + + N L A Sbjct: 800 NKVKAVVITYGEHSE--SAVRLININDKDKEVEIQVEGRIYIFGSKVLSKHHISNMLCTA 857 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEM--ILKNI 376 + IA+ + L+ L +PGR E G I V D ++ +N L M ++ Sbjct: 858 AVAIALDLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNANPLSMQAAIQGA 917 Query: 377 RTIT---SGRIIVVFG 389 RT S ++I+V G Sbjct: 918 RTTARNRSSKLILVLG 933 >gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A] gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A] Length = 467 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 18/189 (9%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN------- 262 TN+ +H+D+ +T A +A R F E +P A++ D + ++ R + Sbjct: 181 TNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGFAVMCIDHPVVQTMVGRIEDRRIITYG 239 Query: 263 ----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318 A R++ + G H K V N++ + D + P+PG NA A Sbjct: 240 QNPQADVRLVDLAPNGGGSHFKVV--FRNRKT---DAAHEIPDLVLPMPGPHNALNATAA 294 Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + +GI A + L V RF G +G I DY H + +LK R Sbjct: 295 IAVAHELGIPDATIRNALAAFGGVKRRFTKTG-EWKGVTIIDDYGHHPVEIAAVLKAARE 353 Query: 379 ITSGRIIVV 387 T+GR++ V Sbjct: 354 STAGRVVAV 362 >gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Streptococcus sp. M143] Length = 457 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 76/385 (19%), Positives = 152/385 (39%), Gaps = 56/385 (14%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N ++++P + + + DSR I AG +FV + G + DGH FI A GA VV+ Sbjct: 16 NDVTVYP----DSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S +N P ++VD+ A+ K ++ AVTG++GK++ + Sbjct: 67 ------LSEKKVANQPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-ASSHGL 194 + ++++ T +N + P + +G + +E H Sbjct: 121 LLS----TTYKTYKTQG----NYNNEIGLPYTVLHM-------PEGTEKLVLEMGQDHLG 165 Query: 195 DQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADD 250 D H L + + L G H+ + + + KM++ + + P +PA +D Sbjct: 166 DIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMRPGSLLLAPADSIVED 225 Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 K+V++ A + + + K +T + P+ G Sbjct: 226 YLPTDKKVVRFGQGAELEITDL--------------VERKDSLTFKANFLEQTLDLPVTG 271 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSN 367 ++ NA++A+ + + G+ + + + L + R E+ + G I D Y Sbjct: 272 KYNATNAMIASYVALQEGVSEEQIRQAFQNLDLTRNRTEWKKA-ANGADILSDVYNANPT 330 Query: 368 SLEMILKNIRTITS---GRIIVVFG 389 ++++IL+ I + G+ I V Sbjct: 331 AMKLILETFSAIPANEGGKKIAVLA 355 >gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxidans DMS010] gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily [Methylophaga thiooxydans DMS010] Length = 451 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 16/143 (11%) Query: 25 WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84 + + K++ D+R IQAG +F+A+ G DGH ++ QA GA A +VS +QD + Sbjct: 20 YADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQAREAGAAAALVS---EIQDDA- 75 Query: 85 TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144 P LVV + RK + A + ++A+TG++GK+SV V + ++ G + Sbjct: 76 -----LPQLVVADVRKAFAHIARAWQQQCKARVVAITGSNGKTSVKEMVTTMLKQVGSVT 130 Query: 145 F-------QIGPTSTISSFAQDN 160 ++G T+S QD+ Sbjct: 131 ATQGNLNNELGVPLTLSCLNQDD 153 >gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 465 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH++++ R F E + IY++ Y +++ + C+ Sbjct: 179 TNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYSECEYHDYLLE-GMSKNCKTFG 237 Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 F + NK ++E F +PGE + NAL AA + + + Sbjct: 238 FSQDADF---RATDLKLNKGTTEFTIESDLADSFKVELMVPGEHNILNALAAASVALDLK 294 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386 I + L+K RF +G +G I DYAH ++ LK + + ++I Sbjct: 295 ISPTAIKRALQKFTGAKRRFMEIG-QLQGATIVDDYAHHPTEIKATLKTAQEQSDNKVIA 353 Query: 387 VF 388 +F Sbjct: 354 IF 355 >gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Legionella pneumophila str. Corby] gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Legionella pneumophila str. Corby] Length = 441 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 41/311 (13%) Query: 85 TIRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I + Sbjct: 58 AIKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQ 115 Query: 140 SGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198 +G++ F IG +SS + ++ +A Y S+ H Sbjct: 116 AGMNPGFLIG---GVSSDFNTSACLGKGRWFVIEADEYDSAFFDKRPKF--------MHY 164 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258 I ++ NL DH D + A + +PK AI DD EV+ Sbjct: 165 RPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALNEVLS 219 Query: 259 RAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312 R + L++ +++ + +HN V + +PL G+F V Sbjct: 220 RGQFSRIETLALSGDAEWVAELIDDSGSQFKILHNGVMVA--------EVSWPLIGQFNV 271 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 N L A G++ + + LE+ V R E V +N G +Y D+AH ++ Sbjct: 272 ENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTAITKT 330 Query: 373 LKNIRTITSGR 383 + ++ SGR Sbjct: 331 IDALK--RSGR 339 >gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Vibrio sp. MED222] gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Vibrio sp. MED222] Length = 452 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 35/284 (12%) Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171 H +LAV+GT GK++ +S + I + G + F +G + +F RL S ++ Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVG--GVLGNFGISARLGE-SMFFVV 157 Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231 +A Y S+ + S + H + NL DH D +A Sbjct: 158 EADEYDSA------FFDKRSKFVHYHPRTLV------MNNLEFDHADIFDDLEAI----K 201 Query: 232 RLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIH 286 R F L+ P +D ++V+ R GC S G QG + KK+ + Sbjct: 202 RQFHHLVRTVPGNGRIFSPKEDTAIQDVLSR----GCWSETESSGEQGDW-DAKKL--VK 254 Query: 287 NKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345 + Q + +G+ + + L G+ V NAL+A +G+ L E L K R Sbjct: 255 DGSQFGVYFQGECVGTVDWNLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRR 314 Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 EF G + G +Y D+AH ++E+ L +R + + +II V Sbjct: 315 LEFKGEVA-GVSVYDDFAHHPTAIELTLSGLRNKVDTKKIIAVL 357 >gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174] gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/366 (21%), Positives = 136/366 (37%), Gaps = 44/366 (12%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAV 120 I G A +S + + ++A I + P + L ++L G+ N +AV Sbjct: 57 IYYGQRASNISDSVQVVVYTAAIHPDNPEFACAKEKGIPMLTRAQLLGQIMRNYDTSIAV 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177 GT GK++ S + I + + PT ++ N S +L +A Y Sbjct: 117 AGTHGKTTTTSMLSHILLKG-----ECDPTISVGGILPAIGGNIRVGQSETFLTEACEYT 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +S ++ G N+ DH+D+ + R F EL Sbjct: 172 NSFLSFFPTI-------------------GIILNIDADHLDFFKDIDD-IRHSFRTFAEL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295 LP E II AD + + + N C+V++ G + + T V Sbjct: 212 LPAEGALIINADTPKYEMITE---NLPCKVITYGLEHDAEYTATDITYDELGHATFHVLH 268 Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 G+D +PG V NAL + + + + ++ + L+ RF++ G + Sbjct: 269 NGEDLGTCSLKVPGIHNVSNALASIAAGQLLDLSTEVIFDGLKDFGGTDRRFQYKG---K 325 Query: 355 GGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411 G + + DYAH +E L + +I VF R + P K AL LAD Sbjct: 326 IGDVTIIDDYAHHPTEIEATLHAAKNYPHKKIWCVFQPHTYTRTKALLPEFAK-ALTLAD 384 Query: 412 IAIVTD 417 ++ D Sbjct: 385 HVVLAD 390 >gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor obsidiansis OB47] Length = 448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 83/369 (22%), Positives = 157/369 (42%), Gaps = 47/369 (12%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ S +S++I +F+ + G + DGH F+ +A+ GA + + S +++ Sbjct: 25 VSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEALQNGAISFI--SHKEIENVRV----- 77 Query: 90 TPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 P + V +T L AS + K ++ VTG+ GK+S ++ + Sbjct: 78 -PYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGKTSTKEYIFNVL----------- 125 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-KLI 205 + +F L ++ S L+ T V+V S+ + +L I K Sbjct: 126 -SCKYKTFKNQGNLNN----HIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPN 180 Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRAHN 262 G TN+G HI+ +++ F AK + ++ +P+ II D+ K+ +KR Sbjct: 181 IGVITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINNDNDILNLHKKELKR--- 236 Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322 +V+++G + + + H Q S E + + +YN+L A + Sbjct: 237 ---KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIKSFNFHDIYNSLFAIAIG 290 Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381 +GID LV E + + + RFE + +G VD + +++ M L I +I Sbjct: 291 TILGIDRQLVKEAIRQKERLKRRFEVI---KKGSITIVDDTYNASTHSM-LSAIDSICEF 346 Query: 382 -GRIIVVFG 389 G+ I+V G Sbjct: 347 DGKKILVLG 355 >gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase [Bacillus cereus 95/8201] Length = 243 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 +I+ V DS++++ G +FV I+ K DGH ++ +A+ GA A + +Y T Sbjct: 23 EIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYVKEAMDNGAVASLWKKSY------GTPPK 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-------QRSG 141 PI+ VDNT L A + ++ +TG++GK++V ++ I + G Sbjct: 76 GVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTVKDIIEGILSSTYRVHKTKG 135 Query: 142 LSSFQIGPTSTISSFAQD 159 + QIG TI +D Sbjct: 136 NFNSQIGLPLTILEMKRD 153 >gi|34763166|ref|ZP_00144133.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887164|gb|EAA24268.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 468 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 14/190 (7%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268 TN+ DH+D H N K E + + AII D KE + R + Sbjct: 181 TNIDADHLDVHGNLD---NIKKSFIEFISHTQKEAIICMDCENLKEAITRLPKGKSVITY 237 Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI 327 S+ + I K + K + + + +F +PGE + N+L L + G+ Sbjct: 238 SIKDENASIFAKNIRITDRKTIFELYINKELIGEFSLNIPGEHNIQNSLPVIYLALKFGV 297 Query: 328 DSALVLEHLEKLHVVPGRFEFV---------GTNSRGGRIYVDYAHTSNSLEMILKNIRT 378 + E L K R++ + G ++ RI DYAH ++ LK I++ Sbjct: 298 SKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKVRIIDDYAHHPTEIKATLKAIKS 357 Query: 379 ITSGRIIVVF 388 I + R++ +F Sbjct: 358 IDTSRLVAIF 367 >gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate/d-alanyl-d-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Caldicellulosiruptor hydrothermalis 108] Length = 448 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 82/371 (22%), Positives = 159/371 (42%), Gaps = 51/371 (13%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 + S +S++I +F+ + G++ DGH F+ +A+ GA + + S +DF Sbjct: 25 VKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEALQNGAISFI-----SQKDFEDI---K 76 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 P + V ++ L+L + Y + N ++ VTG+ GK+S ++ + R Sbjct: 77 VPYIKVQDS--LLALQSLACYARRKLNDLKVVGVTGSVGKTSTKEYIFNVLSRK------ 128 Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV--EASSHGLDQHRLDGI-K 203 +F ++ +S L+ T V+V S+ + +L I K Sbjct: 129 ------YKAFKNQGNFNN----HIGLPISILNMPDDTQVAVFEMGMSNFGEISKLSQIAK 178 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---AYSKEVMKRA 260 G TN+G HI+ +++ F AK + ++ +P+ II +D+ K+ +KR Sbjct: 179 PDIGIITNIGVAHIENLKSRYNIFLAKSEI-QDGMPESGILIINSDNDILNLHKKELKR- 236 Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320 +V+++G + + + H Q S E + + +YN+L A Sbjct: 237 -----KVVTIGIENESNFRAQNVQRH---QNGFSFEVGGYTYFIESFNFHDIYNSLFAIA 288 Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380 + + +D LV E + + + RFE + +G VD + +++ M L I +I Sbjct: 289 VGTILEVDRQLVKEAIRQKERLKRRFEVI---KKGSITVVDDTYNASTHSM-LSAIDSIC 344 Query: 381 --SGRIIVVFG 389 G+ I+V G Sbjct: 345 EFEGKKILVLG 355 >gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9768] gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/11074] gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase [Chlamydia trachomatis G/9301] Length = 450 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 24/149 (16%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 +K+ V+ DSR + G +F A+ GN+ GHLF+ QA GA A VV+S Y + Sbjct: 23 KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSYGLQ-- 80 Query: 88 SNTPILVVDNTRKFLSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142 +L V + R+ L A R YG+ ++ +TG+ GK++ + Q+ S + Sbjct: 81 ----LLRVADPREALRA-AGRTQGALFYGE----VIGITGSVGKTTTKNCANQLL--SSV 129 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171 + P S +++LT P + +A Sbjct: 130 YKVFMSPKS------YNSQLTLPLSVLMA 152 >gi|296129441|ref|YP_003636691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas flavigena DSM 20109] gi|296021256|gb|ADG74492.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas flavigena DSM 20109] Length = 490 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 29/161 (18%) Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 P LAVTGT+GK++ ++ I + +G + +G T P+ LA Sbjct: 106 PAPWLAVTGTNGKTTTVGMLESILRAAGRRTLAVGNVGT--------------PVVLAAV 151 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L ++VE SS L H + A + N+ DH+D+H + AY K R+ Sbjct: 152 DPALDV-----LAVELSSFQL--HHTVSMSAQAAAVLNVAPDHLDWHGSLAAYAADKGRI 204 Query: 234 FEELLPKESPAIIY-ADDAYSKEVMKRAHNA-GCRVLSVGY 272 +E + A +Y A D +++++++A GC ++VG+ Sbjct: 205 YE----RAQVACVYDASDTTTEDLVRQADVVDGC--VAVGF 239 >gi|149278412|ref|ZP_01884549.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] gi|149230782|gb|EDM36164.1| putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase [Pedobacter sp. BAL39] Length = 824 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 21/297 (7%) Query: 53 KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112 K DGH +IP A A G V+S L D A ++ L+VD+ K L A + Sbjct: 52 KRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDYADANFLLVDDVLKALQELAVFNRRQ 111 Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172 + ++A+TG++GK+ V ++ Q+ + F I + SF ++++ P ++ Sbjct: 112 YDTPVMAITGSNGKTIVKEWLYQLLA----ADFNI--VRSPRSF--NSQIGVPLSVW--- 160 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-IAGSFTNLGRDHIDYHQTQQAYFNAKM 231 L+ + + S G + L I G TN+G H + +Q+ K+ Sbjct: 161 ---DLTEEHTLAIFEAGISKGEEMDALAAIIYPTVGILTNVGEAHAEGFSSQKEKLLEKL 217 Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291 +LF KE+ IY+ + Y++ + K+ + + + + + I +K + Sbjct: 218 KLF-----KEADVFIYSPE-YTQGIPKKDLPGNTKFSWSLTESADLQISFIEPIDDKNYI 271 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348 +G++ + L P V N ++ +++G LEKL+ V R E Sbjct: 272 RAIFKGEEIECLIPFSDRASVENGIICWATLLSMGYSPEDADSRLEKLNRVGMRLEL 328 >gi|330813732|ref|YP_004357971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter sp. IMCC9063] gi|327486827|gb|AEA81232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Pelagibacter sp. IMCC9063] Length = 428 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 38/242 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TGT+GKS+ + + ++F +G Y ALSY Sbjct: 110 IIAITGTNGKSTFCKLLYHAIKGKDKNTFLLGN-------------------YGKPALSY 150 Query: 177 LSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +S+ + ++ + E SS+ ++ + +K A + N+ DH++ H+T Y N K+++F+ Sbjct: 151 -NSKSIKNIYILELSSYQIEYSKF--LKFHACAVLNISPDHLERHKTFSNYINIKLKIFD 207 Query: 236 ELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKK--------VCAIH 286 LLP + + +Y+ + K+ + + Q KF+ LK+ V A+ Sbjct: 208 HLLP-GGKGFVNENFSYNNRIQPKKNVRKVSNIKTSNIQNKFL-LKENFLPSVSIVFAVL 265 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL---CIAIGIDSA-LVLEHLEKLHVV 342 +++ + K F+ PLP ++ + A DSA L+H + ++ + Sbjct: 266 KFLKISNKLIIKSFNSFVPLPHRQELIKKIKNISFINDSKATNFDSANFSLKHYQNIYWI 325 Query: 343 PG 344 G Sbjct: 326 AG 327 >gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis M50/1] Length = 459 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 78/339 (23%), Positives = 125/339 (36%), Gaps = 48/339 (14%) Query: 64 IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAV 120 I G +A ++ L ++A IR + P R L + L G+ + N +AV Sbjct: 57 IFYGQKAENLTDGIDLIVYTAAIREDNPEYAAAKERSIPMLSRAELLGQIMDNYNNSIAV 116 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYL 177 GT GK++ S + QI L + + PT ++ + N S I+L++A Y Sbjct: 117 AGTHGKTTTTSMISQI-----LLAAKADPTISVGGILKAIEGNIKVGKSDIFLSEACEYT 171 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 +S H S N+ +H+D+ + Q N+ R F Sbjct: 172 NS--FLHFYPRYSV-----------------ILNVEAEHLDFFKDIQDIRNS-FRKFAGN 211 Query: 238 LPKESPAIIYAD-DAYSK-------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289 K+ II + + Y++ +V+ N C Y K CA Sbjct: 212 TKKDGAIIINGEIENYTELTSGLDPQVITFGLNDSCDY----YPSDITFDKTACASFTAM 267 Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 V D +PG V NAL A L + +GI + +L L RF++ Sbjct: 268 HHGTPV----MDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYK 323 Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 G G I DYAH + L + R+++ F Sbjct: 324 GC-VDGVTIIDDYAHHPTEIRATLTAAKNYPHKRLVLAF 361 >gi|258542968|ref|YP_003188401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256634046|dbj|BAI00022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-01] gi|256637106|dbj|BAI03075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-03] gi|256640158|dbj|BAI06120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-07] gi|256643215|dbj|BAI09170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-22] gi|256646270|dbj|BAI12218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-26] gi|256649323|dbj|BAI15264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-32] gi|256652309|dbj|BAI18243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655367|dbj|BAI21294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acetobacter pasteurianus IFO 3283-12] Length = 471 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 35/169 (20%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGL---SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173 + +TGT+GKS+ + + I + L + +GP A A Sbjct: 126 FVGITGTNGKSTTTTLLAHILAEAKLPVAAGGNLGPA--------------------ALA 165 Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233 L +LS GV +E SS+ L+ RLD + A NL DH+D H Y AK R+ Sbjct: 166 LPFLSDNGV--YVLEMSSYMLE--RLDTLHFDAACLLNLTPDHLDRHAGMDGYAQAKKRV 221 Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLS-----VGYQGK 275 F K+ A+I DD + + + + A C +S Y GK Sbjct: 222 FTGQTDKDL-AVIGVDDTWCRAIAAELEHDPAKCETISGTNPACSYYGK 269 >gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. CNEVA-9066] gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. A1055] gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus anthracis str. Kruger B] Length = 243 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 9 KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68 K F E+IN + + +I+ V DS++I+ G +FV I+ K DGH ++ +A+ GA Sbjct: 4 KKFEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYVKEAMDNGA 61 Query: 69 EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 A + +Y + PI+ VD+T L A + ++ +TG++GK++ Sbjct: 62 IASLWKKSY------GSPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTT 115 Query: 129 VASFVQQICQRS-------GLSSFQIGPTSTISSFAQDNRL 162 V ++ I + + G + QIG TI +D + Sbjct: 116 VKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEI 156 >gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Corynebacterium striatum ATCC 6940] Length = 511 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 144/376 (38%), Gaps = 63/376 (16%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA-----------EAIVVSSAYSLQ- 80 V DSR + G +F+A+ G + DGH F +A+ GA AIVV ++ Sbjct: 31 VEFDSRKVTPGGLFLALPGARVDGHDFAEKAVESGAVAVLAARPVGVPAIVVEPTGKVEG 90 Query: 81 -----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 D A + V+ RL + NI+ VTG++GK+S + Sbjct: 91 DGANADIYANDEDGSAAAVIQALSALARAVTQRLAAEDGLNIVGVTGSAGKTSTKDLIAT 150 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 I + +G + G SF +N + P Y A + ++ E S+ G+ Sbjct: 151 IFRAAGETVAPPG------SF--NNEVGLP---YTA----LRCDEHTEYLVAEMSARGIG 195 Query: 196 QHR-LDGIKLI-AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADD 250 R L GI G N+G H+ +++ AK L E LP + A++ A+D Sbjct: 196 HIRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAKGELVEA-LPSAAEGGVAVLNAND 254 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF---DFLF--- 304 ++ + R + +V QG + Q V+ D FL Sbjct: 255 SFVAGMALRTNAKVVYYSAVAKQG---------STPPAQYYATDVQLDDVARASFLMHTP 305 Query: 305 ---PLP------GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 PLP G QV NAL AA I +G+ + LV L H + N R Sbjct: 306 GHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALSG-HRIASEHRMDVRNRRD 364 Query: 356 GRIYVDYAHTSNSLEM 371 G +D ++ +N M Sbjct: 365 GVTLIDDSYNANPDSM 380 >gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix orenii H 168] gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix orenii H 168] Length = 456 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 26/219 (11%) Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244 V E SS L+ R K +F N DH+D H + + Y+ AK R+FE + + Sbjct: 162 VVAEVSSFQLETIR--DFKPHISAFLNFSPDHLDRHLSVENYWKAKKRIFENQMSGDYAL 219 Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKK-VCAIHNKQQVTISVEGK 298 + Y D +V+K + RV V QG ++ K + ++ +V + VE Sbjct: 220 VNYDD----YKVLKAVEDCSARVFGVSLKDNIEQGIYLEEDKLIINSADRSEVVLPVES- 274 Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358 PL G+ +YN A+ + G + + E + + P R E V T + + Sbjct: 275 -----IPLKGKHNIYNIAFASLIAYLAGASTEAIKEGVYQFIPEPHRLEEV-TVLKDRVM 328 Query: 359 YVDYAHTSNSLEMI--LKNIRTITSGRIIVVFGCGGDRD 395 +D + +N I LK+ + IV+ G DRD Sbjct: 329 VIDDSKATNPHAAINALKSF-----DQPIVLIAGGQDRD 362 >gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine actinobacterium PHSC20C1] gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine actinobacterium PHSC20C1] Length = 508 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 23/135 (17%) Query: 105 FASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162 A RL K P +A+TGT+GK++ A I +G F+ G I Sbjct: 114 LAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAG---FRAGAVGNIG-------- 162 Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASS---HGLDQHRLDGIKLIAGSFTNLGRDHIDY 219 I + A+ Y G + VE SS HG+ + + I +A N+ DH+D+ Sbjct: 163 -----IPVLDAIRY--PDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDW 215 Query: 220 HQTQQAYFNAKMRLF 234 H ++ AY NAK ++ Sbjct: 216 HGSRAAYANAKATVY 230 >gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Nocardioides sp. JS614] Length = 461 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 35/237 (14%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR G +FVA+VG DGH + A GA A++ S + P +VV Sbjct: 32 DSRQAVPGGLFVAVVGEHVDGHDY-----AAGAHAVLGSRP-----------TEAPTIVV 75 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + L A+ + + +LAVTG+ GK+ ++ +I +G + +T S Sbjct: 76 RDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTKDYLARILSAAGST------VATSGS 129 Query: 156 FAQDNRLTTPSPIYLAKALS-YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214 F +N L P + A + YL + + A G +H + + N+G Sbjct: 130 F--NNELGLPLTVLRAHPETRYLV------LEMGARRIGHIKHLCEIAPPDVAAVLNVGT 181 Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271 HI ++ + AK + L P E A++ A D E+ R RVL+ G Sbjct: 182 AHIGEFGSRDSIAFAKGEIVAALQP-EGTAVLNAGDPLVAEMTSRTR---ARVLTWG 234 >gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10394] gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10750] Length = 463 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + DSR I G +F+ + G + DGH FI A GA A FS S Sbjct: 26 LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELSG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142 P L+V++ K A K +++AVTG++GK+S V S + + G Sbjct: 75 KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ D + +E + Q + I Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167 Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250 +L++ T +G H++Y ++ KM++ + + S I+ A D Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGM---NSDGILIAPGDPIID 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 Y E V+ G Q + V I +K +T + PLPG+ Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368 + NA+VAA + + + ++ L+ + + R E+ + G I D Y + Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331 Query: 369 LEMILK---NIRTITSGRIIVVFG 389 + +IL+ NI G+ I V Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355 >gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 76/353 (21%), Positives = 146/353 (41%), Gaps = 56/353 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ +S D+R IQ G +FV G +GH F+ QA +GA A + Q Sbjct: 24 VSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGAGASL------WQKDEPNPPEG 77 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ-------QICQRSGL 142 P+L VD+ L A +H + +TG++GK+S + ++ + G Sbjct: 78 YPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDILAGTLAPFFKVQKTIGN 137 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA----LSYLSSQGVTHVSVEASSHGLDQHR 198 + Q+G TI +D T + + + + + +LS H++V Sbjct: 138 FNNQLGLPITILQLDED---TDVAVLEMGMSGFGEIEFLSKLARPHMTV----------- 183 Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEV 256 TN+G H+ ++ AK FE + ++ +++ D+ +E+ Sbjct: 184 ----------ITNIGEAHMQDLGSRAGIAKAK---FEIIQGMQNDGLLFYDGDEPLLQEL 230 Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEG-KDFDFLFPLPGEFQVYN 314 + + + + SV + + +L IH N + G + DF + G QV N Sbjct: 231 VAKEQH----LQSVPFGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISVLGRHQVKN 286 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVDYAHTS 366 LVA + +G+ + + LE + + R + +GTN G ++++ A+ + Sbjct: 287 TLVAMLISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTN---GALFINDAYNA 336 >gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) [Streptococcus pneumoniae CDC1873-00] Length = 457 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 83/413 (20%), Positives = 158/413 (38%), Gaps = 58/413 (14%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +SIF E+ DSR I G +FV + G + DGH FI A GA A + Sbjct: 16 NDVSIFEGTQLEK----AEFDSRLIATGDLFVPLKGAR-DGHDFIETAFENGAVATL--- 67 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S +N P ++VD+ A+ K ++ AVTG++GK++ + Sbjct: 68 -------SEKEIANHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTKDMLAH 120 Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + ++T ++ + I L + ++ + V H D Sbjct: 121 LL------------STTYKTYKTQGNYN--NEIGLPYTVLHMPEETEKLVLEMGQDHLGD 166 Query: 196 QHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPA--IIYAD 249 H L + + L G H+ + + + KM++ + + P +PA I+ A Sbjct: 167 IHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGMAPGSLLLAPADPIVEAY 226 Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309 K+V++ A + + + K +T + P+ G+ Sbjct: 227 LPADKKVVRFGQGAELEITDL--------------VERKDSLTFKANFLEQALDLPVTGK 272 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368 + NA++A+ + + G+ + + + L + R E+ + G I D Y + Sbjct: 273 YNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEW-KKAANGADILSDVYNANPTA 331 Query: 369 LEMILKNIRTITS---GRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAI 414 +++IL+ I + G+ I V G Q ++ ++ D+ DI I Sbjct: 332 MKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVI 384 >gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 462 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/366 (19%), Positives = 150/366 (40%), Gaps = 34/366 (9%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 I V+ +S+ I+ G +F+ + + DGH FI AI GA+A + ++ A S Sbjct: 27 ITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQDAIDHGAQATLWAND------PADAPSE 79 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149 P++ V++T A G ++AVTG++GK++ ++F + Sbjct: 80 IPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGKTTTKDMTAATLS----TTFNVYK 135 Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209 T +N+L P I LS V V + S G + + Sbjct: 136 TQG----NYNNQLGVPFTI-----LSMPEDTEVLVVEMGMSGPGEIRFLAQLCPMDVAVI 186 Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA--HNAGCRV 267 T +G HI++ +++ AK+ + E L KE IY D + ++ +A + Sbjct: 187 TMIGESHIEFLGSRENIAKAKLEILEGL--KEDGTFIYPGD---EPLVDQAVVDMPEIKK 241 Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326 + VG + ++ + + ++ + + P+ G++ V NAL+A + + G Sbjct: 242 IRVGLDDSEDVYAENIVNEREHTHFYTNL-SPNVELSIPVSGDYNVKNALMACAVAYSQG 300 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-----TITS 381 + + L + + R E++ + Y +++ +++N +TS Sbjct: 301 LAVEQIKTPLSQFKLTANRSEWLMGKDDIQILNDTYNANPSAMRAVIRNFSQLERPAVTS 360 Query: 382 GRIIVV 387 +++V+ Sbjct: 361 HKVLVL 366 >gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus warneri L37603] gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus warneri L37603] Length = 449 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 122/282 (43%), Gaps = 43/282 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175 I+AVTGT+GK++V S + + + S L+ G ++S AQ+ S YL LS Sbjct: 113 IIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGYVASKVAQE----VSSKEYLITELS 168 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 G+ +Q++ I +I TN+ H+DYH++ + Y NAK ++++ Sbjct: 169 SFQLLGI------------EQYK-PHIAII----TNIYSAHLDYHESLENYQNAKKQIYK 211 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293 + Y Y + + + N + L Q + I++K I K I Sbjct: 212 NQTEDD-----YLICNYHQRHLIESENLKAKTLYFSTQQEVDGIYIKD-GFIEYKGVRII 265 Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353 SVE LPGE + N L A I G+ + + L + R +++GTN Sbjct: 266 SVED------LVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRLQYIGTN- 318 Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DR 394 R + Y D + +N+L + S +++ CGG DR Sbjct: 319 RTNKYYND-SKATNTLATQF----ALNSFNQPIIWLCGGLDR 355 >gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232] gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus pyogenes MGAS10270] Length = 463 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/384 (22%), Positives = 146/384 (38%), Gaps = 78/384 (20%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ + DSR I G +F+ + G + DGH FI A GA A FS S Sbjct: 26 LHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQNGAVAT----------FSEKELSG 74 Query: 90 TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS-------VASFVQQICQRSGL 142 P L+V++ K A K +++AVTG++GK+S V S + + G Sbjct: 75 KPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTKDMIGAVLSTTYKTYKTQGN 134 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202 + +IG T+ D + +E + Q + I Sbjct: 135 YNNEIGLPYTVLHMPDDTE----------------------KIVLE-----MGQDHMGDI 167 Query: 203 KLIA-------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-----D 250 +L++ T +G H++Y ++ KM++ + + S I+ A D Sbjct: 168 RLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGM---NSDGILIAPGDPIID 224 Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGE 309 Y E V+ G Q + V I +K +T + PLPG+ Sbjct: 225 PYLPE--------NQMVIRFGNQQEI----DVTGIQEDKDSLTFTTNVLATPVSLPLPGK 272 Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368 + NA+VAA + + + ++ L+ + + R E+ + G I D Y + Sbjct: 273 YNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKA-ANGADILSDVYNANPTA 331 Query: 369 LEMILK---NIRTITSGRIIVVFG 389 + +IL+ NI G+ I V Sbjct: 332 MRLILETFANIAKNPGGKKIAVLA 355 >gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 459 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 38/316 (12%) Query: 82 FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---LAVTGTSGKSSVASFVQQICQ 138 ++A + ++ P + + L + L G+ N +AV+GT GK++ S + I Sbjct: 75 YTAAVHADNPEFIAAKEHQLPMLTRAELLGQLMTNYKTPIAVSGTHGKTTTTSMISHI-- 132 Query: 139 RSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 L + PT ++ + N S +++ +A Y +S Sbjct: 133 ---LLAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNS---------------- 173 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 LD + I G N+ DH+D+ + ++ R F LLPK+ II ++ + ++ Sbjct: 174 --FLDFLPKI-GIILNVEEDHMDFFKDLDDIRHSFHR-FAALLPKDGTLIINSEISQYEQ 229 Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLF-PLPGEFQV 312 ++ C V++ G + + N V+ + G D +F + GE V Sbjct: 230 IIA---GLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEHNV 286 Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372 NAL A +GID + + L RFE+ GT G I DYAH +E Sbjct: 287 SNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGT-LDGVTIIDDYAHHPTEIEAT 345 Query: 373 LKNIRTITSGRIIVVF 388 L + I +F Sbjct: 346 LSAAQHYPHREIWCIF 361 >gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri MJ11] gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri MJ11] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 39/252 (15%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 ++A+TG++GKS+V ++ + +G+ + G FA + L + +Y+ + S+ Sbjct: 110 VIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG----FAALDLLEQDAELYVLELSSF 165 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E +S +KL A +F NL DH+D +Q Y AK+R+F+ Sbjct: 166 ---------QLETTST---------LKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDH 207 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISV 295 I+ DD + +++ + S G+ QG + ++K + + + Sbjct: 208 ----AEVCIVNRDDKQTYPDVEKT------LKSFGFDQGDYGCIEKDGIEYLAKDAMSLL 257 Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355 + L G+ + N+LVA L A+GI+ L+ L + + R + V N+ Sbjct: 258 AANELG----LVGKHNIANSLVAIALLDAVGINLDATLDTLRTYNGLTHRCQVVADNN-- 311 Query: 356 GRIYVDYAHTSN 367 G +V+ + +N Sbjct: 312 GIRWVNDSKATN 323 >gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sanguibacter keddieii DSM 10542] Length = 464 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 14/110 (12%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR + AG +FVA+VG DGH A+A GA ++ S P +VV Sbjct: 32 DSRKVSAGALFVALVGESSDGHDHAAGAVADGAALVLASREL----------DGLPCVVV 81 Query: 96 DNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141 D+ + L L A+ RL P + AVTG+ GK++ + + SG Sbjct: 82 DDVTRALGLVAAEHLRRLRASGPLQVAAVTGSVGKTTTKDLLGHVLSESG 131 >gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [marine gamma proteobacterium HTCC2207] Length = 455 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 29 KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88 + + VS +SR+I G +FVA++G + DGH F+ + A +VVSSA + D Sbjct: 24 EFDGVSINSRNIAEGDLFVALIGERLDGHEFLAD-VTDRASGLVVSSADT--DLP----- 75 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136 P VV++T L A ++AVTG++GK+SV + I Sbjct: 76 -LPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAI 122 >gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1] gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1] Length = 475 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 99/439 (22%), Positives = 152/439 (34%), Gaps = 73/439 (16%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL--YGKHPENIL 118 P I +G IVVS+A I N P L R +++ Y L Sbjct: 60 PANIPEGNPVIVVSTA---------ILDNNPELAAAKARGLTIWHRAQMLAYLGRALQTL 110 Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178 AV GT GK++ +S + + G PT I I A + S Sbjct: 111 AVAGTHGKTTTSSMLASVLDGMGED-----PTFLIGG------------IVRAYGTNAHS 153 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 G H VEA L ++ TN+ DH+D+++ + K F + Sbjct: 154 GTG-AHYVVEADESDKSFMHLSPRAVL---VTNIEADHLDHYRDLDEIYE-KFASFIGSV 208 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298 P + ++ + + +++ A +G R+ + G+ C + V G Sbjct: 209 PDDGGVVVACGE--DEALVRVACASGKRLFTYGF-------SDACDVRIASYEPNGV-GS 258 Query: 299 DFDFLFP-----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 DF P PG V NA GL A+G D A E L V RF+ Sbjct: 259 DFTLELPDGSVVSAHVKQNPGRHNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFD 318 Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405 VG + G + DYAH + ++ + + V+F + P+ ++ Sbjct: 319 LVG-EAGGVTVVDDYAHHPTEIAATIEAASHLGFAHVHVLFQP---HRYSRAPLFTEVLK 374 Query: 406 -----ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKG---NRIEAIRTA 452 A D AD D P E P K ++ G E RIE + Sbjct: 375 DDFGRAFDAADAVTFMDVYPAGEAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYL 434 Query: 453 IEMLNKQDVLVVAGKGHET 471 L + D+L+ G G T Sbjct: 435 AGKLGEGDLLITMGAGDVT 453 >gi|255098853|gb|ACU00766.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bolletii] Length = 181 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 18/178 (10%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269 TN+ DH+D+ + +AY +A F E L E ++ DD + + +RAH G RV Sbjct: 9 TNIEADHLDHFGSAEAY-SAVFDEFAETLGSEGVLVVCLDDPGAAALARRAHERGIRVRG 67 Query: 270 VGYQGKF-------------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316 G G+ K A Q+ ++ E +PG NAL Sbjct: 68 YGSAGQAEAGGVPVAGQLRDWQFKDTGAT---AQIQLAGESAPRTMRLSVPGRHMALNAL 124 Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374 A IG VL+ L V RFE VG+ R++ DYAH + +L+ Sbjct: 125 AAVVAAAEIGASVDDVLDGLAGFEGVRRRFELVGS-VESVRVFDDYAHHPTEVRTVLQ 181 >gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus oremlandii OhILAs] gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus oremlandii OhILAs] Length = 454 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 13/183 (7%) Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228 +++KAL + + +EASS L+ + + G+ NL DH++ H+T + Y Sbjct: 149 FISKALETTADDVIV---IEASSFQLES--IVDFRPQVGAILNLTPDHLNRHKTMENYQK 203 Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIH 286 AK +F+ E A+I DD +E K+ A ++ +G F+ K+ A+ Sbjct: 204 AKFNIFKN-QGAEDIAVINYDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKIVALK 262 Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 + + I + F +PG + NAL A + +++G+D ++ L+ V R Sbjct: 263 DGHKKEIISKDDIF-----IPGNHNLENALAATAMTLSLGVDIDVIQHTLKTFKGVEHRT 317 Query: 347 EFV 349 E V Sbjct: 318 EIV 320 >gi|225677415|ref|ZP_03788382.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590559|gb|EEH11819.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 504 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/347 (23%), Positives = 139/347 (40%), Gaps = 59/347 (17%) Query: 67 GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122 G A +S A + SA N ++ N K + + A + GK+ ++AV+G Sbjct: 77 GHNANNISQAQIVVHSSAIESDNVELIAAKNNNKTVLHRSDILAEIMKGKY---VIAVSG 133 Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182 +SGK++ + + I S + + I ++S+ +++L K+ ++L Sbjct: 134 SSGKTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSKL--------GKSDTFL----- 179 Query: 183 THVSVEASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240 +EA D+ +K+ A T++ DHIDY+ T NA F + + Sbjct: 180 ----IEA-----DESDGTMLKIPAKIAVITSINNDHIDYYGTFDNIKNA----FSQFVNN 226 Query: 241 ESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL----------------K 280 A++ D S + N R ++ I K Sbjct: 227 AGSAVLSDSVDIDYDASNSITFGFENGSIRASNIKQHANSIEFDVLNNWIPASATCMTKK 286 Query: 281 KVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338 +V + H + Q VT+ L G +V NAL A + I +GI A + + L + Sbjct: 287 QVSSHHPLSSQCVTLGSSPLKNIVLSNAIGIHKVSNALAAISVAIKLGISDADIKKGLLE 346 Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385 V RF + N +G ++ DYAH N + L R+IT G++I Sbjct: 347 FQGVARRFSLIA-NIKGVKLIEDYAHHPNEIYATLTAARSITKGKVI 392 >gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1] Length = 474 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 38/232 (16%) Query: 36 DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95 DSR ++AG +F A G DGH + +A+A GA A++ + + P +VV Sbjct: 34 DSRKVEAGSLFAAFAGEHVDGHAYAERAVAAGAAAVLAARPVGV-----------PAIVV 82 Query: 96 DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155 + K L A + + +++A+TG++GK+S + Q+ Q + + G Sbjct: 83 PDVEKALGALARAVVERLGTDVVALTGSAGKTSTKDLIAQVLQSHAPTVWTPG------- 135 Query: 156 FAQDNRLTTPSPIYLAKALSY-----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210 + +N + P A A + + ++G+ H+ A GL R+ G Sbjct: 136 -SLNNEIGLPLTALQATAETRHLVLEMGARGIGHI---AYLTGLTPPRI-------GLVL 184 Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEVMKR 259 N+G HI ++ AK L E LP E+ A++ ADD + + R Sbjct: 185 NVGTAHIGEFGGREQIAQAKGELVEA-LPAEADGGVAVLNADDLLVRAMSAR 235 >gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C] Length = 474 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 44/243 (18%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V DSR ++ G +F A G DGH + +A+A GA A++ + + Sbjct: 26 RTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYAGRAVAAGAVAVLAARPVGV-------- 77 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147 P +VV + K L A + + +++A+TG++GK+S + Q+ Q + + Sbjct: 78 ---PAIVVPDVEKALGALARTVVERLGTDVVALTGSAGKTSTKDLIAQVLQHHAPTVWTP 134 Query: 148 G--------PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199 G P + + + A+ L + ++G+ H+ A GL R+ Sbjct: 135 GSLNNEIGLPLTALKATAETRHLVL-----------EMGARGIGHI---AYLTGLTPPRI 180 Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---AIIYADDAYSKEV 256 G N+G HI ++A AK L E LP E+ A++ ADD + + Sbjct: 181 -------GLVLNVGTAHIGEFGGREAIAQAKGELVEA-LPSEAEGGVAVLNADDLLVRAM 232 Query: 257 MKR 259 R Sbjct: 233 SAR 235 >gi|167756017|ref|ZP_02428144.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402] gi|237734002|ref|ZP_04564483.1| folyl-polyglutamate synthetase [Mollicutes bacterium D7] gi|167704009|gb|EDS18588.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402] gi|229382828|gb|EEO32919.1| folyl-polyglutamate synthetase [Coprobacillus sp. D7] Length = 389 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 24/131 (18%) Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPL-------------PGEFQVYNALVAAGLC-IA 324 K I N Q V++ + D D+ +P G +QV NA +A +C Sbjct: 200 FKAAAEIKNSQVVSVEI---DCDYRYPYHFSCLGYDYQLSNCGSYQVANATLAINVCDYL 256 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 I +D +LV L+ PGRFE + G+IY+D AH + ++ ++K + + Sbjct: 257 IELDHSLVQRALDGFSW-PGRFE------KFGKIYLDGAHNIDGIKALIKTLHDQQIKKA 309 Query: 385 IVVFGCGGDRD 395 +V+F GD+D Sbjct: 310 LVIFSALGDKD 320 >gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter desulfuricans SSM1] gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter desulfuricans SSM1] Length = 413 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 37/205 (18%) Query: 47 VAIVGNKEDGHLFIPQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104 +AI +K+DG F P A + + +VVS +++ L V+N K +S Sbjct: 28 IAIFDDKQDG--FKPTADFDDENFDLVVVSPGLNIEK-----------LNVNNKSKVISE 74 Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 + + + +TG++GKS+ QI + GL S G Sbjct: 75 YELVFNLVKDKTFIGITGSNGKSTTTFLTSQILNKIGLKSVACGN--------------- 119 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L Y + VE SS +D R G L AG N+ DH+D ++T + Sbjct: 120 -----IGYPLGYAIFDDFDYFVVEFSSFQIDLMR-KGEFLDAGVIINITPDHLDRYKTFE 173 Query: 225 AYFNAKMRLFEELLPKESPAIIYAD 249 Y +K+RL ELL + ++ D Sbjct: 174 NYLKSKVRL-SELLKDDGFFVVGKD 197 >gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC 19707] gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC 19707] Length = 476 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 134/336 (39%), Gaps = 41/336 (12%) Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQ + +G + +VVSSA + + I VV L R YG +AV Sbjct: 70 PQHV-EGCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFR-YG------IAV 121 Query: 121 TGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179 GT GK++ S + I + L +F IG ++S ++RL YL Sbjct: 122 AGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGE---------YL-- 168 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 V +S L Q L I TN+ DH+D + A F LP Sbjct: 169 --VAEADESDASFLLLQPLLAVI-------TNVDADHMDAYGGDFTALKAAFLEFLHHLP 219 Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298 A++ DD +E++ G VL+ G + HL+++ + Q ++ GK Sbjct: 220 FYGLAVVCLDDPVLRELLP---GIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGK 276 Query: 299 D--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355 D + LPG NAL A + +GI + + L+ + RF+ G + Sbjct: 277 DNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPA 336 Query: 356 GRIYV--DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 G++ + DY H L L+ IR R++V+F Sbjct: 337 GKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIF 372 >gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170] gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170] Length = 823 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 40/235 (17%) Query: 26 RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83 R+ I+ + +DSR + +F A+ + DGH +IP+ A+G VV+ + Sbjct: 20 RQASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYARGVYNFVVA------EVP 73 Query: 84 ATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQIC 137 +++ T + LVV N K L RL GKH E ++ +TG++GK+ V ++ Q+ Sbjct: 74 EEMKNCTDVNFLVVGNVLKAL----QRLAGKHREQYQVPVIGITGSNGKTVVKEWLYQL- 128 Query: 138 QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + P I S + ++++ P +++ + L G+ + S G Sbjct: 129 ---------LSPDKRIIRSPRSYNSQIGVPLSVWMMDEHTEL---GIFEAGI--SEMGEM 174 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 + I+ G TN+G H + + Q K+ LF KE I+Y D Sbjct: 175 ETLEPIIRPTIGVLTNIGGAHQENFSSLQDKCMEKLLLF-----KECDVIVYNGD 224 >gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia nassauensis DSM 44728] Length = 463 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 36/229 (15%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R V DSR I+ G +FVA G DGH F A+A GA A +VS Sbjct: 26 RVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAAAAVADGAVAALVSR-----------E 74 Query: 88 SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146 + P ++VD+ + A + + PE I+ VTG++GK+S + ++C+ G + Sbjct: 75 VDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSAGKTSTKDVMAELCRALGPT--- 131 Query: 147 IGPTSTISSFAQDNRLTTP-SPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDG 201 + P T+ +N + P + + + + YL S++G+ H+ L G Sbjct: 132 VAPEGTL-----NNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDY------LCGIAPPG 180 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250 I ++ N+G H+ T AK L E + P I+ ADD Sbjct: 181 IAVV----INVGTAHMGEFGTVDGIARAKGELAEAVAPG-GVVILNADD 224 >gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus sp. CC9902] gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp. CC9902] Length = 462 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 43/247 (17%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG--PTSTISSFAQDNRLTTPSPIYLAKALS 175 + +TGT+GK++V + + +G+ + G S + R TP P +L LS Sbjct: 113 VGITGTNGKTTVTHLLSHVLGHAGIVAPMGGNMGVSAADMALKIRRGETPKPDWLVMELS 172 Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235 +EA + + G +T L DH++ H T +AY K Sbjct: 173 SYQ--------IEAGPN---------LAPSIGIWTTLTPDHLERHGTLEAYRAIK----H 211 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-- 293 LL + S AI DDA AH + +G ++ C I Sbjct: 212 SLLQRSSLAIFNGDDADLS-----AHRPSLK------RGMWVKAAPPCHDDPPADFWIDD 260 Query: 294 --SVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346 +V+ ++ +FP +PG N L+ IG+++ + + LE VP R Sbjct: 261 AGTVQAREGGAMFPAKVLAMPGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGVPHRL 320 Query: 347 EFVGTNS 353 E +G+ S Sbjct: 321 ENLGSTS 327 >gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Legionella pneumophila 2300/99 Alcoy] Length = 455 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 51/315 (16%) Query: 86 IRSNTPIL--VVDNTRKFLS---LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140 I+ P+L V+++ + ++S A + K+ ++AV GT GK++ S + I ++ Sbjct: 73 IKRGMPVLEAVMESGKPYMSGPQWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQA 130 Query: 141 GLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--- 196 G++ F IG S S F + L K ++ + E S D+ Sbjct: 131 GMNPGFLIGGVS--SDFN--------TSACLGKGRWFVIE------ADEYDSAFFDKRPK 174 Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254 H I ++ NL DH D + A + +PK AI DD Sbjct: 175 FMHYRPNIAVL----NNLEFDHADIYPDLAA-IQQQFHYLLRTIPKSGVAIKPRDDKALN 229 Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPG 308 EV+ R + L++ +++ + +HN V + +PL G Sbjct: 230 EVLSRGQFSRIETLALSGDAEWVAELIDDSGSQFKILHNGVMVA--------EVSWPLIG 281 Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368 +F V N L A G++ + + LE+ V R E V +N G +Y D+AH + Sbjct: 282 QFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE-VRSNRHGVTVYDDFAHHPTA 340 Query: 369 LEMILKNIRTITSGR 383 + + ++ SGR Sbjct: 341 ITKTIDALK--RSGR 353 >gi|227822653|ref|YP_002826625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sinorhizobium fredii NGR234] gi|227341654|gb|ACP25872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sinorhizobium fredii NGR234] Length = 463 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 25/153 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177 +A+TGT+GKS+ + + I + SG + Q+G + D KA + Sbjct: 117 IAITGTNGKSTTTALIAHILKSSGRDT-QLGGNIGRAVLTLDP----------PKAGRFF 165 Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237 VE SS+ +D + AG NL DH+D H T Q Y + K E L Sbjct: 166 V--------VECSSYQIDLAPT--LDPTAGILLNLTPDHLDRHGTMQHYADIK----ERL 211 Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 + A++ DD++S + +R AG +V+ + Sbjct: 212 VAGSGTAVVGVDDSFSSLIAERVERAGTKVVRI 244 >gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter vinelandii DJ] gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter vinelandii DJ] Length = 448 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 59/333 (17%) Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161 + LFA Y + P I+A+TG++ KS+V + V ++ + +G A Sbjct: 100 IELFAR--YARAP--IVAITGSNAKSTVTTLVGEMARAAG------------RRVAVGGN 143 Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYH 220 L TP AL L G+ +E SS L+ RL+ + N+ DH+D + Sbjct: 144 LGTP-------ALDLLD-DGIELYVLELSSFQLETTERLNAE---VATCLNVSEDHMDRY 192 Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280 QAY AK R+F ++ DDA S+ ++ A C +G K Sbjct: 193 ADLQAYHLAKHRIFR----GARQVVVNRDDALSRPLV--ADRLPCWTFGLGKP----DFK 242 Query: 281 KVCAIHNKQQVTISVEGKDFDFLFP-----LPGEFQVYNALVAAGLCIAIGIDSALVLEH 335 + + ++ + F+ L P + G NAL A L A+G+ A +LE Sbjct: 243 GFGLLEENGEKCLAFQ---FETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPMLET 299 Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGC--- 390 L++ +P R +++ G Y D + +N + ++ + +G+++++ G Sbjct: 300 LKRFAGLPHRCQWLRDVREVG--YYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDGK 357 Query: 391 GGDRDQGKRPIMGK------IALDLADIAIVTD 417 G D +RP+ + D IA+V D Sbjct: 358 GADFSSLRRPVAEHCRAVVLLGRDAGRIAVVLD 390 >gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5] gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase [Bacteroides fragilis 638R] Length = 432 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 38/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91 V++DSR+ AG +F+A+ G +G+ F QA+ G A AIV + Y+ ++ N Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I++VDN + L A+ + ++ +TGT+GK++ + + +S + G Sbjct: 69 IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +N + P + KA L+ + + A+ G + + + G TN Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G+ H++ + + K L++ L KE S I+ D+AY +M AH+ ++ Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAHD--LNLIPY 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326 G + V N +T + GKD D L GE+ NAL A + G Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384 +++ + E L R + T + +D A+ +N M+ L+N R +T + Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVEKK 345 Query: 385 IVVFG 389 +++ G Sbjct: 346 MLILG 350 >gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter sp. ELB17] gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter sp. ELB17] Length = 448 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 28/231 (12%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GK++V + V + + +G +Q+ I + A D L T + +Y+ Sbjct: 111 IIAITGSNGKTTVTTLVADMARDAG---YQVAVGGNIGTPALD-LLNTGARLYV------ 160 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 +E SS L+ D + +A + N+ DH+D + + AY+ AK R+F Sbjct: 161 ----------LELSSFQLETT--DELNALAATVLNVSDDHMDRYPDKMAYYQAKQRIFRG 208 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296 AI+ DDA S + + C ++ F + H VT ++ Sbjct: 209 C----QYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGH--PWVTWGLD 262 Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 L G + N + A GL A G+ +L H +P R E Sbjct: 263 NLIRADELGLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCE 313 >gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Streptococcus sanguinis ATCC 49296] Length = 457 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 80/391 (20%), Positives = 149/391 (38%), Gaps = 68/391 (17%) Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75 N +S+F + ++ + DSR I+ G +FV + G + DGH FI A GA VV+ Sbjct: 16 NDVSLFA----DVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFENGA---VVT- 66 Query: 76 AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135 S +N P ++VD+ A+ K ++ AVTG++GK++ + Sbjct: 67 ------LSEKEVANHPYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTKDMLAH 120 Query: 136 ICQRS-------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + G + +IG T+ D + G H+ Sbjct: 121 LLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTE-------------KLVLEMGQDHLG-- 165 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNL-GRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPA 244 D H L + + L G H+ + + + KM++ + + P +PA Sbjct: 166 ------DIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPA 219 Query: 245 IIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302 +D K+V++ A V + I K +T + Sbjct: 220 DPIVEDYLPTDKKVVRFGQGAELEVTDL--------------IERKDSLTFKANFLEQAL 265 Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361 P+ G++ NA++AA + + G+ + + + L + R E+ + G I D Sbjct: 266 DLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKA-ANGADILSDV 324 Query: 362 YAHTSNSLEMILKNIRTITS---GRIIVVFG 389 Y ++++IL+ I + G+ I V Sbjct: 325 YNANPTAMKLILETFSAIPANEGGKKIAVLA 355 >gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis AMD] Length = 536 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 13/111 (11%) Query: 31 NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90 N V SDSR I+ G +FVAIVG DGH ++ A GA +V +N Sbjct: 56 NSVFSDSRQIRNGSVFVAIVGEHVDGHDYVKNAEKSGAVVAIVEHVVE--------GTNL 107 Query: 91 PILVVDNTRKFLSLFAS-----RLYGKHPENILAVTGTSGKSSVASFVQQI 136 +VV+N+ + L L A R P I+ +TG+ GK++ ++ + Sbjct: 108 NQIVVNNSVEALGLLAKHNLELRRNLNKPFTIIGITGSVGKTTTKDMLKAL 158 >gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp. SPB74] gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp. SPB74] Length = 474 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 26/166 (15%) Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164 A RL G LAVTGT+GK++ + I + +G + +G Sbjct: 103 LAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------- 149 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 + L A+ L+ + ++VE SS+ L H ++ + + NL DH+D+H + Sbjct: 150 ---VSLLDAV--LAEEPYDVLAVELSSYQL--HWAPSVRPHSAAVLNLAPDHLDWHGSMA 202 Query: 225 AYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVL 268 AY K R++E A +Y AD A K V GCR + Sbjct: 203 AYAADKGRIYE----GNQVACVYNAADPATEKLVRAADVEEGCRAI 244 >gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Methylobacterium extorquens AM1] Length = 487 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 89/380 (23%), Positives = 151/380 (39%), Gaps = 42/380 (11%) Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87 R + S D+R ++ G +F AI G DGH F+ A+ + V + ++F Sbjct: 25 RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAAL-EKGAGAAVVAEARAKEFEGA-- 81 Query: 88 SNTPILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGL 142 P+L V L A R G + I+AVTG+ GK+ ++ + G Sbjct: 82 --GPVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAVTGSVGKTGTKEALRHVLSAQGA 139 Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG- 201 + ++++S+ +N P+ L + L + GV + + +HG + L Sbjct: 140 TH------ASVASY--NNHWGV--PLTLTRMLED-TRFGVFEIGM---NHGAEILPLTAM 185 Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 ++ T + HI++ ++ A +AK +F L P A+I D+ + ++ A Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPG-GVAVINRDNPNYERLLAHAQ 244 Query: 262 NA-GCRVLSVGYQGKFIHLKKVCA--IHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNA 315 + RV++ G VCA I + V++ +V G + PG N+ Sbjct: 245 ASRAGRVITFGEHAA----ADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNS 300 Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEM--- 371 L A+G D A L L GR E G + VD ++ +N + Sbjct: 301 LGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAA 360 Query: 372 --ILKNIRTITSGRIIVVFG 389 L I T GR I V G Sbjct: 361 LSTLAGIDTGAKGRRIAVLG 380 >gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222] gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222] Length = 486 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 46/285 (16%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKA--- 173 +AV GT GK++ + V QI + L +F G + S + RL + S I +A+A Sbjct: 125 IAVAGTHGKTTTTALVTQIYSEADLDPTFVNG--GLVKSAGTNARLGS-SRILIAEADES 181 Query: 174 -LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM- 231 S+L Q + + + +D + G F L + ID+ Y A M Sbjct: 182 DASFLHLQPMVSIVTNIEADHMDTY--------GGDFETLKQTFIDFLHNLPFYGQAVMC 233 Query: 232 ---RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288 + EL+P+ S +I +S++ R N + G QGKF Sbjct: 234 VDDPVVRELIPQVSRQVITY--GFSEDADIRIEN----YVQEGQQGKF------------ 275 Query: 289 QQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347 T+ EGK + D +PG NA A + I +L+ + RF+ Sbjct: 276 ---TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFD 332 Query: 348 FVGTNSRGGRIYV---DYAHTSNSLEMILKNIRT-ITSGRIIVVF 388 +G G + + DY H +++ ++ R+ T R++++F Sbjct: 333 HLGEYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIF 377 >gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Desmospora sp. 8437] Length = 474 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 51/371 (13%) Query: 84 ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143 ++I + I+ V + + + A+ + + + AVTG++GKS+ S V I +RS Sbjct: 99 SSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSAGKSTTTSMVTSILKRSRRV 158 Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 G +T + P YL + LS + + +++ ++ Q R+ ++ Sbjct: 159 VHTQGNLNTFTYL----------PSYLLR-LSPGDEFLMLEMGMKSFNNIARQCRV--VR 205 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAH 261 G+ TN+G H AK L + L P A +Y AD SK++ R Sbjct: 206 PEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPG---ATLYLNADCLRSKQLSTRRF 262 Query: 262 NAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317 + QG I N + EGK F P G+ V NAL Sbjct: 263 RGSVYTFGIRNPADIQGSNIQYST-----NGVSFDVMTEGKRGRFFIPTWGDHNVLNALA 317 Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYAHTSN--SLEMIL 373 A G+ A+GI + + L K+ + R + + RG GR ++ A +N +++ L Sbjct: 318 AIGIARALGIGFHQIRDGLAKVKLPRMRLQRI----RGSHGRTLINDAWNANPSAMKAGL 373 Query: 374 KNIRTITSGRI-IVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423 +R ++S R I V G GG G R + G+ A + ++T E Sbjct: 374 SVLRYLSSKRPGIAVLGDMMELGGYTRAGHREV-GRFAARMNLHQLITYGQKAREIGRTA 432 Query: 424 -----DPEKIR 429 DP ++R Sbjct: 433 LAAGMDPHRVR 443 >gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter piscolens W5455] gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter piscolens W5455] Length = 436 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 169/405 (41%), Gaps = 72/405 (17%) Query: 71 IVVSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128 +VVSS S + + ++ N P+ + L L A L GK I+AVTGT+GK++ Sbjct: 67 MVVSSGVSEKSDAVSMARAKNVPV------QGELDLLAPFLKGK----IIAVTGTNGKTT 116 Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188 + + + + +GL++ G + L+ + + + +E Sbjct: 117 CTALIAHLLRNAGLNAVSAG--------------------NIGNPLAAHADRSYDAIVME 156 Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESPAII 246 SS L H ++ TNL DH+D+H + + Y N K ++F LP+ E A+ Sbjct: 157 LSSFQL--HWNTQLRPDVAVLTNLAPDHLDWHGSYENYKNDKCKIF---LPRQEECYAVT 211 Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306 + DA+ + G L + G+ + L H ++++ L Sbjct: 212 HDVDAFRVPAGRAVCALGRGNLRIDMDGRDVFLVG----HGRRRLLFHKSS------LKL 261 Query: 307 PGEFQVYNALVAAGLCIAIG-----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361 G + NA ++ C A+ +D + L E LH R E VG + G +++D Sbjct: 262 LGSHNLENAAMS---CAAVALAFRDVDPSAGLAGFEALH---HRCEPVG--EQNGVLFID 313 Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421 + +N + ++ + +I ++I++ G G + + ++ + AIV Sbjct: 314 DSKGTN-VAAVIAALHSINGRKLIILGGQGKGESYDE---LARVVCEETFAAIVI----- 364 Query: 422 SEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465 + EKI A + + G + + EA++ A E+ D ++++ Sbjct: 365 GSEAEKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLLS 409 >gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212] gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212] Length = 475 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 35/237 (14%) Query: 210 TNLGRDHI-----DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----- 259 TN+ DH+ D+++ +Q + F + LP A++ DDA +EVM Sbjct: 179 TNIDADHMETYGYDFNKLKQTFVE-----FLQHLPFYGMAVVCIDDANIREVMPAITKSI 233 Query: 260 -----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314 + +A R ++ + H K A+ + ++ + D LPG + N Sbjct: 234 TTYGLSEDAQVRATNIQHSN---HQMKFTAV-----IGVNGSARRLDITLNLPGLHNIQN 285 Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLE 370 AL A + I + A ++ L + V RF+ G + + + DY H +E Sbjct: 286 ALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSMQKSFTLIDDYGHHPAEME 345 Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDDNPRSEDP 425 +K R GR +VV R R + L AD+ ++T+ P EDP Sbjct: 346 ATMKAARGAFPGRRLVV-AFQPHRYTRTRDVFEDFTRVLSQADVLLLTEVYPAGEDP 401 >gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC 43531] Length = 785 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 15/222 (6%) Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-L 268 TN+ DH+D++ T + A R F E + + A++ ++A + + + C V Sbjct: 186 TNVEDDHMDHYGTMEKII-AAFRQFIEQVDTDGAAVLCFENANLRNIARETKR--CVVSY 242 Query: 269 SVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIA 324 ++ Y+ + + I + + T+ G + + +PG V NAL + Sbjct: 243 AIDYEADY----RASDIETRGSLISFTVHERGAEMGHISLNIPGRHNVLNALACIAVARL 298 Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384 +G++ + L + H RF+ G RG + DYAH + + L R R+ Sbjct: 299 VGVEFPAIRAALAQFHGAKRRFQTKG-KERGVWVVDDYAHHPTEISVTLAAARQTNPERL 357 Query: 385 IVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425 I VF R Q R G+ D AD+ ++TD E P Sbjct: 358 ICVFQPHRYSRTQLLREEFGRCFAD-ADLLLLTDIYAAGEAP 398 >gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides fragilis YCH46] Length = 432 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 38/365 (10%) Query: 33 VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTP 91 V++DSR+ AG +F+A+ G +G+ F QA+ G A AIV + Y+ ++ N Sbjct: 16 VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPEN-------NRH 68 Query: 92 ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151 I++VDN + L A+ + ++ +TGT+GK++ + + +S + G Sbjct: 69 IILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNL- 127 Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211 +N + P + KA L+ + + A+ G + + + G TN Sbjct: 128 -------NNHIGVPMTLLRLKAEHELAV-----IEMGANHPGEIKFLVHIAEPDYGIITN 175 Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSV 270 +G+ H++ + + K L++ L KE S I+ D+AY +M AH+ ++ Sbjct: 176 VGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHDNAY---LMDIAHD--LNLIPY 230 Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDF---LFPLPGEFQVYNALVAAGLCIAIG 326 G + V N +T + GKD D L GE+ NAL A + G Sbjct: 231 GSEDSLYVNGHVTG--NSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFG 288 Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI--LKNIRTITSGRI 384 +++ + E L R + T + +D A+ +N M+ L+N R +T + Sbjct: 289 VEAGKIDEALAGYTPRNNRSQLKKTADN--TLIID-AYNANPTSMMAALQNFRNMTVEKK 345 Query: 385 IVVFG 389 +++ G Sbjct: 346 MLILG 350 >gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali symbiont] Length = 439 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 41/238 (17%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 I+A+TG++GKS+V + V ++ + +G +Q+G I AL+ Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAG---WQVGVGGNIG----------------LPALTL 147 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFE 235 L S +V +E SS L+ +K A + N+ DH+D Y Q Y AK+R++E Sbjct: 148 LKSPAQLYVVLELSSFQLETTY--SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYE 205 Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295 ++ ADD + V A R +S G HL N+QQ + + Sbjct: 206 ----NADICVVNADDGMTMPV----RGADRRCVSFGIDVGDYHL-------NQQQGSTWL 250 Query: 296 EGKDFDFL----FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349 K L L G+ NAL A L A+ I A L+ L +P RF+ V Sbjct: 251 RVKGEKVLNTDEMKLVGQHNYTNALAALALADAVNIPLASSLKALTTYSGLPHRFQLV 308 >gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC 100599] gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 76/338 (22%), Positives = 137/338 (40%), Gaps = 57/338 (16%) Query: 66 QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123 +GA++IV +S +I + P ++ + S++ + + +AV G Sbjct: 62 EGADSIV---------YSTSISKDNPEVIAGQALGIPVMHRSQMLARILNERTGVAVAGA 112 Query: 124 SGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL----SYLS 178 GK++ S + + + G+ +F IG + S + + T S +A+A S+L Sbjct: 113 HGKTTTTSMISHVLEECGVDPTFIIG--GELMSAGTNAKAGT-SDYVIAEADESDGSFLE 169 Query: 179 SQGVTHV--SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 + + + S+E D ++ G F NL +QAY F Sbjct: 170 YRPMYEIVTSIEP----------DHLEHFDGDFNNL----------KQAYVQ-----FLS 204 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---NKQQVTI 293 L + AI+ DD++ +EVM V++ F+ + A + T Sbjct: 205 HLKPDGKAILCIDDSHVREVMPSVEKT---VVTYAVDPNFVAQAQFSATSIECGDRCSTC 261 Query: 294 SVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350 V KD + +PG+ + NAL A +C+ IG+ + + L RF+ +G Sbjct: 262 QVYHKDERLGELCLVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFSGAKRRFQIIG 321 Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 ++RG + DYAH + L R + R+I VF Sbjct: 322 -DARGVLVVDDYAHHPTEIIATLSGARA-SGRRVIAVF 357 >gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC 29799] gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC 29799] Length = 491 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 47/285 (16%) Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----------FAQDNRLTT 164 +N L ++GT GK++ S I + Q PT I + + + Sbjct: 147 KNALCISGTHGKTTTTSMCTHIAMAA-----QADPTVMIGGTLPLLGAGHRVGRGDTIIL 201 Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224 S Y LS+ + V + +EA DH+D+ + + Sbjct: 202 ESCEYCNSFLSFFPTVAVI-LDIEA-------------------------DHLDFFKDLE 235 Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284 R F +L+P++ + DD + M +++ G + +H + Sbjct: 236 D-VEKSFRTFADLVPEDGVIVANRDD---ENTMHTLEGEARPMVTFGLEEGDVHAANLTW 291 Query: 285 IHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343 + +G+ F + +PGE V NAL AA I +G+ + V E L Sbjct: 292 SRGLPTFDVIWKGQPFAHVSLRVPGEHNVKNALAAAASAIVLGMPAKAVEEGLSAFRGAA 351 Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388 RFE G+ G +Y DYAH L+ +L + + RII F Sbjct: 352 RRFEHKGS-YHGAEVYDDYAHHPGELKALLSAVSGLGYDRIICAF 395 >gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein [Sphingomonas sp. S17] Length = 459 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 57/359 (15%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89 ++ V+ DSR + G +FVA++G DGH F+ QA AQGA +VS ++ Sbjct: 23 VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQAFAQGAAGALVS-------------AD 69 Query: 90 TP---ILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS----- 140 TP + V D+ R L ASR + I+ VTG+ GK+S + +R Sbjct: 70 TPHPHVKVADSFRALEDLGRASR--ARTQATIIGVTGSVGKTSAKEALYAALERGWHGRV 127 Query: 141 --GLSSF--QIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195 + S+ G +++ +D R + A LS L++ H+++ Sbjct: 128 HRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSALTAMVRPHIAI-------- 179 Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255 T + H ++ + A +AK +F+ L P + AII D + Sbjct: 180 -------------VTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGT-AIIPYDSPHRDR 225 Query: 256 VMKRAHNAGCRVLSVGYQ-GKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313 ++ A R+++ G+ +H ++ + + VT + ++ +F PG+ V Sbjct: 226 LIAAAKPYAARIVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVS 285 Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEM 371 NAL A G D L L +L + GR F N G + +D ++ +N M Sbjct: 286 NALAVLAAVDAAGGDLGLAGLALAELGGLAGRGARFRAAN---GALIIDESYNANPASM 341 >gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110] gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110] Length = 485 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 81/319 (25%), Positives = 123/319 (38%), Gaps = 44/319 (13%) Query: 59 FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116 F+ A A GA+A+V S+A + I VV L RL + Sbjct: 54 FVGHAAAHIDGADAVVTSTAVQSDNPEVLAAREKRIPVVPRALMLAELM--RL-----KQ 106 Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +A+ GT GK++ S V + +GL PT F RL + A A + Sbjct: 107 GIAIAGTHGKTTTTSLVASVLDAAGLD-----PT-----FVIGGRLNS------AGANAQ 150 Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236 L S ++ VEA D L+ + ++A TN+ DH++ + A F Sbjct: 151 LGSG--DYIVVEADES--DASFLNLLPVMA-VVTNIDADHMETYGHDFAKLKKAFVDFLH 205 Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCA-IHNKQQV 291 +P AI+ DD ++++ C V S G+ Q + I ++ V +H Q Sbjct: 206 RMPFYGVAILCTDDPAVRDIVAEVT---CPVTSYGFGEEAQVRAIDVRAVGGQMHFTAQR 262 Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351 V D + LPGE V NAL + + +GI V L V RF+ G Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322 Query: 352 NSRGGR------IYVDYAH 364 + G + DY H Sbjct: 323 VAAQGEPAGSFTVIDDYGH 341 >gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter xylosoxidans C54] Length = 510 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 25/161 (15%) Query: 98 TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157 R L +R Y P +LAVTGT+GK++V + + + SGLS G Sbjct: 117 ARALAELAETREY--RP-RVLAVTGTNGKTTVTALTRDLVAASGLSVLAAGNI------- 166 Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDH 216 SP L + L + + V V E SS L+ + A N+ +DH Sbjct: 167 --------SPAALTALMQALDADDLPQVWVLELSSFQLETTHT--LMADAAVVLNVTQDH 216 Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257 +D+H AY K R LL AI+ DD Y+ +++ Sbjct: 217 LDWHGGMDAYARTKAR----LLKMTRIAIVNRDDPYTVDMV 253 >gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii ATCC 43553] gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii ATCC 43553] Length = 468 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 41/285 (14%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176 +AV GT GK++ S V + L +F IG ++S + RL Sbjct: 108 IAVAGTHGKTTTTSLVASVLAAGDLD